Query 006396
Match_columns 647
No_of_seqs 673 out of 3417
Neff 12.1
Searched_HMMs 46136
Date Thu Mar 28 22:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.6E-76 2.1E-80 622.1 68.0 618 2-644 57-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-74 3.2E-79 613.0 68.0 592 28-636 48-685 (857)
3 PLN03218 maturation of RBCL 1; 100.0 6E-68 1.3E-72 549.2 68.5 546 61-644 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.1E-67 8.9E-72 543.0 66.1 544 28-589 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.2E-61 4.8E-66 500.0 52.6 473 97-640 86-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.7E-61 1E-65 497.6 53.8 512 61-589 85-611 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.2E-40 9.1E-45 361.0 74.8 559 40-636 341-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-39 2E-43 350.5 75.6 621 2-640 233-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-30 2.4E-35 284.5 71.2 605 3-642 35-746 (1157)
10 PRK11447 cellulose synthase su 100.0 2.4E-28 5.1E-33 266.3 67.6 563 40-639 40-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2E-26 4.3E-31 239.0 66.1 577 6-639 54-708 (987)
12 PRK09782 bacteriophage N4 rece 100.0 7.8E-25 1.7E-29 227.3 66.1 585 2-640 84-743 (987)
13 KOG2002 TPR-containing nuclear 100.0 3.5E-25 7.6E-30 214.2 54.3 575 43-647 145-755 (1018)
14 KOG2002 TPR-containing nuclear 100.0 4.7E-24 1E-28 206.5 53.5 612 12-640 146-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 2.2E-23 4.8E-28 191.7 40.0 431 137-583 52-486 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 3.2E-23 7E-28 190.7 39.6 450 101-569 51-506 (966)
17 KOG0495 HAT repeat protein [RN 99.9 1.4E-18 3.1E-23 161.4 60.0 585 9-640 264-883 (913)
18 TIGR00990 3a0801s09 mitochondr 99.9 5E-20 1.1E-24 189.0 51.4 426 173-638 132-572 (615)
19 TIGR00990 3a0801s09 mitochondr 99.9 2E-19 4.4E-24 184.6 53.2 429 136-583 130-572 (615)
20 KOG2076 RNA polymerase III tra 99.9 1.1E-17 2.4E-22 161.9 55.8 595 40-639 151-851 (895)
21 KOG2076 RNA polymerase III tra 99.9 9.7E-18 2.1E-22 162.2 54.8 616 4-633 147-891 (895)
22 KOG0495 HAT repeat protein [RN 99.9 4.9E-17 1.1E-21 151.3 56.8 567 40-639 263-848 (913)
23 PRK11788 tetratricopeptide rep 99.9 2.2E-20 4.8E-25 182.4 36.5 299 318-643 45-353 (389)
24 PRK11788 tetratricopeptide rep 99.9 1.9E-20 4.1E-25 182.9 34.5 308 65-379 37-354 (389)
25 PRK15174 Vi polysaccharide exp 99.9 1.6E-19 3.4E-24 184.3 41.6 336 237-583 41-382 (656)
26 PRK15174 Vi polysaccharide exp 99.9 7.5E-19 1.6E-23 179.3 45.2 324 40-372 54-381 (656)
27 PRK14574 hmsH outer membrane p 99.9 1.9E-17 4.2E-22 169.0 53.0 207 314-546 298-512 (822)
28 PRK10049 pgaA outer membrane p 99.9 4.9E-18 1.1E-22 177.4 48.4 166 165-335 12-177 (765)
29 PRK10049 pgaA outer membrane p 99.9 1E-17 2.2E-22 175.0 50.2 441 61-563 13-470 (765)
30 PRK14574 hmsH outer membrane p 99.9 4E-17 8.7E-22 166.7 51.5 431 137-583 38-514 (822)
31 KOG1915 Cell cycle control pro 99.9 4.3E-16 9.3E-21 139.6 47.0 440 97-583 72-537 (677)
32 KOG1915 Cell cycle control pro 99.8 6.4E-15 1.4E-19 132.2 49.5 470 62-546 72-584 (677)
33 KOG4422 Uncharacterized conser 99.8 3.8E-15 8.2E-20 132.0 41.9 389 164-575 203-618 (625)
34 KOG4422 Uncharacterized conser 99.8 7.7E-15 1.7E-19 130.1 42.5 236 133-372 207-462 (625)
35 KOG2003 TPR repeat-containing 99.8 1.8E-15 3.8E-20 135.1 37.2 481 99-623 202-709 (840)
36 KOG2003 TPR repeat-containing 99.8 7.9E-16 1.7E-20 137.2 32.6 441 169-638 202-690 (840)
37 KOG2047 mRNA splicing factor [ 99.8 5.1E-12 1.1E-16 118.3 56.1 580 13-629 43-715 (835)
38 KOG1155 Anaphase-promoting com 99.8 3.8E-14 8.2E-19 127.1 36.1 327 237-581 163-494 (559)
39 PF13429 TPR_15: Tetratricopep 99.7 2.8E-17 6.2E-22 151.3 13.7 261 348-636 13-276 (280)
40 KOG1155 Anaphase-promoting com 99.7 3.7E-12 8E-17 114.6 42.2 365 200-581 161-535 (559)
41 KOG1173 Anaphase-promoting com 99.7 1.4E-12 3.1E-17 120.4 39.2 492 65-583 18-519 (611)
42 PRK10747 putative protoheme IX 99.7 1.9E-13 4E-18 131.8 35.7 284 321-637 97-390 (398)
43 TIGR00540 hemY_coli hemY prote 99.7 1.6E-13 3.4E-18 133.1 34.4 289 320-636 96-398 (409)
44 KOG1173 Anaphase-promoting com 99.7 1.5E-12 3.3E-17 120.2 37.4 497 97-643 15-522 (611)
45 KOG1126 DNA-binding cell divis 99.7 1.7E-14 3.8E-19 135.7 24.8 290 321-643 332-626 (638)
46 KOG3785 Uncharacterized conser 99.7 7.9E-12 1.7E-16 108.5 39.0 484 71-623 30-536 (557)
47 PRK10747 putative protoheme IX 99.7 1.9E-13 4E-18 131.8 32.9 295 31-336 86-389 (398)
48 KOG1156 N-terminal acetyltrans 99.7 3.6E-10 7.9E-15 106.6 52.6 593 6-639 17-690 (700)
49 KOG0547 Translocase of outer m 99.7 2.8E-12 6.1E-17 116.1 36.6 223 352-583 335-567 (606)
50 TIGR00540 hemY_coli hemY prote 99.7 2.1E-13 4.6E-18 132.2 31.9 301 31-336 86-398 (409)
51 KOG4162 Predicted calmodulin-b 99.7 3.5E-11 7.6E-16 115.6 45.5 435 164-639 319-785 (799)
52 PF13429 TPR_15: Tetratricopep 99.7 5.3E-16 1.2E-20 142.9 12.7 253 40-299 20-274 (280)
53 KOG0547 Translocase of outer m 99.7 6.6E-13 1.4E-17 120.1 30.9 221 388-636 336-565 (606)
54 KOG2047 mRNA splicing factor [ 99.7 6.7E-10 1.5E-14 104.5 51.4 533 5-571 111-712 (835)
55 COG2956 Predicted N-acetylgluc 99.6 6.7E-13 1.4E-17 113.7 27.0 219 43-267 50-278 (389)
56 COG3071 HemY Uncharacterized e 99.6 6.8E-12 1.5E-16 111.2 33.7 287 321-637 97-390 (400)
57 COG2956 Predicted N-acetylgluc 99.6 3.4E-12 7.5E-17 109.4 29.9 293 73-372 45-347 (389)
58 COG3071 HemY Uncharacterized e 99.6 4.3E-12 9.2E-17 112.5 30.8 298 30-337 85-390 (400)
59 KOG1126 DNA-binding cell divis 99.6 3.5E-13 7.7E-18 127.0 24.7 288 78-376 334-624 (638)
60 KOG1129 TPR repeat-containing 99.6 1.5E-13 3.2E-18 117.7 20.1 239 382-647 227-468 (478)
61 KOG3785 Uncharacterized conser 99.6 2.3E-11 5.1E-16 105.6 33.5 456 105-643 29-496 (557)
62 KOG1156 N-terminal acetyltrans 99.6 2.8E-10 6E-15 107.3 42.7 471 136-634 11-508 (700)
63 KOG4162 Predicted calmodulin-b 99.6 4.3E-10 9.3E-15 108.3 44.5 539 7-583 208-784 (799)
64 KOG4318 Bicoid mRNA stability 99.6 6E-11 1.3E-15 115.5 34.4 531 19-586 13-598 (1088)
65 KOG4318 Bicoid mRNA stability 99.5 1.4E-10 3.1E-15 113.0 36.4 491 53-581 15-556 (1088)
66 KOG0985 Vesicle coat protein c 99.5 1.6E-08 3.4E-13 100.4 49.3 546 4-579 476-1220(1666)
67 KOG2376 Signal recognition par 99.5 8E-09 1.7E-13 96.7 44.7 126 100-233 14-140 (652)
68 TIGR02521 type_IV_pilW type IV 99.5 2.3E-11 4.9E-16 110.0 27.1 202 412-637 30-232 (234)
69 KOG3617 WD40 and TPR repeat-co 99.5 1.7E-08 3.7E-13 98.0 45.1 539 2-644 763-1366(1416)
70 KOG2376 Signal recognition par 99.5 5E-09 1.1E-13 98.0 39.4 224 70-309 19-259 (652)
71 PRK12370 invasion protein regu 99.5 2.7E-11 5.9E-16 122.3 27.4 249 78-337 276-535 (553)
72 KOG1174 Anaphase-promoting com 99.4 5.2E-09 1.1E-13 93.3 34.8 270 305-583 229-501 (564)
73 PRK12370 invasion protein regu 99.4 8.9E-11 1.9E-15 118.6 27.7 250 358-638 276-536 (553)
74 PF12569 NARP1: NMDA receptor- 99.4 6.4E-09 1.4E-13 101.2 38.9 300 36-371 12-333 (517)
75 PF12569 NARP1: NMDA receptor- 99.4 1.2E-08 2.6E-13 99.3 40.5 125 315-441 201-333 (517)
76 KOG1174 Anaphase-promoting com 99.4 3.3E-08 7.1E-13 88.4 39.2 300 239-548 195-501 (564)
77 COG3063 PilF Tfp pilus assembl 99.4 1.1E-10 2.3E-15 95.7 21.8 189 40-232 47-236 (250)
78 KOG1129 TPR repeat-containing 99.4 4.3E-11 9.4E-16 102.8 20.3 235 343-583 223-459 (478)
79 KOG3616 Selective LIM binding 99.4 2E-08 4.2E-13 96.4 38.7 364 111-544 544-908 (1636)
80 TIGR02521 type_IV_pilW type IV 99.4 1.5E-10 3.2E-15 104.7 24.0 165 64-231 32-197 (234)
81 KOG0985 Vesicle coat protein c 99.4 3.2E-07 7E-12 91.5 47.4 239 353-635 1058-1306(1666)
82 KOG1127 TPR repeat-containing 99.4 1.5E-08 3.2E-13 100.6 38.0 564 40-636 470-1103(1238)
83 KOG1127 TPR repeat-containing 99.4 6.9E-08 1.5E-12 96.1 42.1 561 11-583 473-1105(1238)
84 KOG3617 WD40 and TPR repeat-co 99.3 9.3E-08 2E-12 93.1 39.4 476 3-547 807-1359(1416)
85 PRK11189 lipoprotein NlpI; Pro 99.3 1E-09 2.2E-14 101.2 25.4 225 392-639 40-267 (296)
86 COG3063 PilF Tfp pilus assembl 99.3 2.9E-09 6.3E-14 87.5 24.4 199 416-638 38-237 (250)
87 PRK11189 lipoprotein NlpI; Pro 99.3 2.7E-09 5.8E-14 98.4 25.1 220 40-268 38-266 (296)
88 KOG1840 Kinesin light chain [C 99.3 2.5E-09 5.5E-14 102.5 25.3 204 418-635 246-477 (508)
89 KOG3616 Selective LIM binding 99.3 4.5E-07 9.7E-12 87.4 38.4 312 68-437 620-932 (1636)
90 KOG0548 Molecular co-chaperone 99.3 6.9E-08 1.5E-12 89.7 32.0 434 69-583 8-456 (539)
91 KOG0624 dsRNA-activated protei 99.2 6.1E-07 1.3E-11 78.5 35.0 326 206-583 41-371 (504)
92 KOG0548 Molecular co-chaperone 99.2 1.6E-08 3.4E-13 93.9 26.8 223 381-639 227-457 (539)
93 KOG1840 Kinesin light chain [C 99.2 5.6E-09 1.2E-13 100.2 23.1 236 64-299 200-476 (508)
94 cd05804 StaR_like StaR_like; a 99.2 1.1E-07 2.3E-12 91.9 32.0 191 2-196 12-214 (355)
95 KOG0624 dsRNA-activated protei 99.2 7.8E-07 1.7E-11 77.9 32.4 332 61-443 36-371 (504)
96 cd05804 StaR_like StaR_like; a 99.2 2.2E-07 4.8E-12 89.7 33.3 200 62-265 5-213 (355)
97 KOG4340 Uncharacterized conser 99.1 2.6E-07 5.6E-12 79.1 27.6 352 170-545 12-373 (459)
98 PF13041 PPR_2: PPR repeat fam 99.1 2.3E-10 5E-15 72.7 6.8 49 411-459 1-49 (50)
99 PF13041 PPR_2: PPR repeat fam 99.1 2.6E-10 5.6E-15 72.5 6.7 49 446-494 1-49 (50)
100 KOG4340 Uncharacterized conser 99.1 2.9E-07 6.2E-12 78.8 26.6 355 66-475 13-373 (459)
101 PRK04841 transcriptional regul 99.1 2.3E-05 5E-10 86.1 48.9 340 283-638 384-761 (903)
102 KOG1914 mRNA cleavage and poly 99.1 1.2E-05 2.7E-10 75.1 41.1 185 394-581 309-500 (656)
103 KOG1125 TPR repeat-containing 99.1 3.5E-08 7.6E-13 92.4 20.7 259 353-630 295-564 (579)
104 PRK04841 transcriptional regul 99.1 4.3E-05 9.2E-10 84.1 48.3 372 210-583 348-761 (903)
105 PF04733 Coatomer_E: Coatomer 99.0 1.4E-08 2.9E-13 92.1 16.9 252 316-583 9-266 (290)
106 KOG1125 TPR repeat-containing 99.0 7E-08 1.5E-12 90.5 21.1 229 29-265 286-525 (579)
107 KOG1070 rRNA processing protei 99.0 3.9E-07 8.5E-12 94.1 25.2 236 50-290 1446-1688(1710)
108 KOG1914 mRNA cleavage and poly 98.9 4.7E-05 1E-09 71.4 42.1 186 324-511 309-500 (656)
109 PF04733 Coatomer_E: Coatomer 98.9 6.8E-08 1.5E-12 87.6 17.1 257 280-554 8-270 (290)
110 PRK10370 formate-dependent nit 98.9 1.5E-07 3.2E-12 80.5 17.6 156 3-171 23-181 (198)
111 PRK10370 formate-dependent nit 98.9 3.8E-07 8.2E-12 78.0 20.0 148 420-583 23-174 (198)
112 KOG2053 Mitochondrial inherita 98.9 0.0001 2.2E-09 73.7 46.2 224 40-268 21-256 (932)
113 TIGR03302 OM_YfiO outer membra 98.9 2.5E-07 5.5E-12 83.0 19.9 187 411-638 31-233 (235)
114 PRK15359 type III secretion sy 98.9 5.8E-08 1.3E-12 78.4 13.7 96 486-583 27-122 (144)
115 KOG1070 rRNA processing protei 98.9 6.1E-07 1.3E-11 92.8 23.8 234 377-636 1457-1699(1710)
116 PLN02789 farnesyltranstransfer 98.9 4.3E-06 9.3E-11 77.0 27.1 220 391-636 50-301 (320)
117 COG5010 TadD Flp pilus assembl 98.9 1.3E-06 2.8E-11 74.1 20.7 157 417-578 70-227 (257)
118 KOG1128 Uncharacterized conser 98.8 4E-07 8.6E-12 88.0 19.6 218 344-583 399-617 (777)
119 PLN02789 farnesyltranstransfer 98.8 3.6E-06 7.8E-11 77.5 25.3 210 70-285 44-267 (320)
120 KOG1128 Uncharacterized conser 98.8 1.4E-06 3E-11 84.4 22.1 215 380-637 400-616 (777)
121 KOG2053 Mitochondrial inherita 98.8 0.00024 5.2E-09 71.1 49.8 520 7-545 20-606 (932)
122 PRK15359 type III secretion sy 98.8 3.8E-07 8.2E-12 73.7 15.3 123 433-563 13-136 (144)
123 KOG3060 Uncharacterized conser 98.8 6E-06 1.3E-10 69.4 22.0 189 391-583 25-221 (289)
124 PRK15179 Vi polysaccharide bio 98.8 2.8E-06 6E-11 86.6 23.8 135 445-583 83-218 (694)
125 COG5010 TadD Flp pilus assembl 98.7 4.7E-06 1E-10 70.7 19.7 159 102-264 70-228 (257)
126 TIGR03302 OM_YfiO outer membra 98.7 2.7E-06 5.8E-11 76.4 19.9 187 377-583 32-233 (235)
127 PRK15179 Vi polysaccharide bio 98.7 1.3E-05 2.8E-10 81.8 25.7 162 409-581 82-244 (694)
128 TIGR02552 LcrH_SycD type III s 98.7 6.6E-07 1.4E-11 72.2 13.5 94 487-582 21-114 (135)
129 PRK14720 transcript cleavage f 98.6 9.4E-06 2E-10 83.6 22.4 224 377-640 30-255 (906)
130 PRK14720 transcript cleavage f 98.6 3E-05 6.6E-10 80.0 25.3 218 342-583 30-253 (906)
131 COG4783 Putative Zn-dependent 98.6 2.5E-05 5.5E-10 72.5 22.1 115 458-576 316-431 (484)
132 KOG3081 Vesicle coat complex C 98.6 4E-05 8.6E-10 65.2 21.1 216 71-302 16-236 (299)
133 TIGR02552 LcrH_SycD type III s 98.5 4.3E-06 9.4E-11 67.4 14.0 110 50-162 5-114 (135)
134 KOG3060 Uncharacterized conser 98.5 0.00033 7.3E-09 59.3 23.5 203 355-563 24-235 (289)
135 COG4783 Putative Zn-dependent 98.5 3.1E-05 6.7E-10 72.0 19.3 124 488-635 311-435 (484)
136 PF12854 PPR_1: PPR repeat 98.4 3E-07 6.5E-12 52.0 3.8 32 268-299 2-33 (34)
137 PF09976 TPR_21: Tetratricopep 98.4 1.1E-05 2.3E-10 65.7 14.5 125 486-634 15-144 (145)
138 KOG3081 Vesicle coat complex C 98.4 0.00012 2.7E-09 62.3 20.7 216 106-337 16-236 (299)
139 PF12854 PPR_1: PPR repeat 98.4 3.5E-07 7.5E-12 51.8 4.0 31 444-474 3-33 (34)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.4E-05 2.9E-10 75.2 16.2 125 485-635 171-295 (395)
141 PRK15363 pathogenicity island 98.3 1.1E-05 2.4E-10 63.7 11.7 91 488-581 40-131 (157)
142 PF09976 TPR_21: Tetratricopep 98.3 3.6E-05 7.8E-10 62.6 15.4 126 450-579 14-144 (145)
143 PF12895 Apc3: Anaphase-promot 98.3 2.1E-06 4.5E-11 62.1 5.9 82 531-634 2-84 (84)
144 cd00189 TPR Tetratricopeptide 98.3 1.4E-05 3E-10 60.1 10.9 96 521-638 3-98 (100)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 4.2E-05 9.2E-10 60.1 12.6 100 521-639 5-107 (119)
146 PF13414 TPR_11: TPR repeat; P 98.2 7.4E-06 1.6E-10 56.6 7.1 67 552-639 2-69 (69)
147 KOG0550 Molecular chaperone (D 98.1 0.00014 2.9E-09 66.1 15.5 257 318-583 59-351 (486)
148 PLN03088 SGT1, suppressor of 98.1 4.4E-05 9.5E-10 72.4 13.4 93 488-583 7-100 (356)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.3E-05 1.8E-09 70.1 14.9 128 63-196 169-296 (395)
150 COG4700 Uncharacterized protei 98.1 0.0011 2.4E-08 53.2 18.6 134 445-580 86-220 (251)
151 KOG0553 TPR repeat-containing 98.1 5.5E-05 1.2E-09 65.8 12.4 94 458-556 91-185 (304)
152 COG4700 Uncharacterized protei 98.1 0.0016 3.6E-08 52.3 19.3 101 480-582 86-189 (251)
153 KOG0553 TPR repeat-containing 98.1 2.7E-05 5.8E-10 67.7 10.2 90 490-583 88-179 (304)
154 PRK15363 pathogenicity island 98.1 5.5E-05 1.2E-09 59.9 10.7 93 67-161 39-131 (157)
155 PF13432 TPR_16: Tetratricopep 98.1 1.8E-05 3.8E-10 53.9 6.6 61 558-639 2-62 (65)
156 PRK02603 photosystem I assembl 98.1 0.00016 3.5E-09 60.9 13.7 99 519-638 36-150 (172)
157 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.0002 4.4E-09 56.2 13.7 99 485-583 4-106 (119)
158 COG4235 Cytochrome c biogenesi 98.0 0.00032 6.9E-09 61.7 15.3 102 480-583 153-257 (287)
159 KOG2041 WD40 repeat protein [G 98.0 0.017 3.7E-07 56.7 27.9 29 61-89 690-718 (1189)
160 PLN03088 SGT1, suppressor of 98.0 0.00023 5E-09 67.6 15.5 99 454-557 8-107 (356)
161 cd00189 TPR Tetratricopeptide 98.0 0.00013 2.8E-09 54.6 11.0 94 66-161 3-96 (100)
162 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.5E-10 57.4 5.5 82 496-579 2-84 (84)
163 KOG2041 WD40 repeat protein [G 98.0 0.023 5E-07 55.8 27.7 206 200-439 689-904 (1189)
164 PRK10153 DNA-binding transcrip 98.0 0.00072 1.6E-08 67.1 18.2 136 445-583 334-483 (517)
165 COG4235 Cytochrome c biogenesi 98.0 0.00061 1.3E-08 59.9 15.5 100 61-162 154-256 (287)
166 KOG0550 Molecular chaperone (D 97.9 0.0046 9.9E-08 56.6 21.1 164 133-302 168-350 (486)
167 PF12688 TPR_5: Tetratrico pep 97.9 0.00049 1.1E-08 52.7 12.8 108 66-179 4-117 (120)
168 COG3898 Uncharacterized membra 97.9 0.016 3.5E-07 52.8 32.4 256 355-644 132-399 (531)
169 PF12688 TPR_5: Tetratrico pep 97.9 0.00045 9.7E-09 52.9 12.4 92 489-581 7-103 (120)
170 PRK02603 photosystem I assembl 97.9 0.00046 1E-08 58.1 13.9 91 62-153 34-126 (172)
171 PF07079 DUF1347: Protein of u 97.9 0.022 4.9E-07 53.1 44.3 204 343-558 298-530 (549)
172 CHL00033 ycf3 photosystem I as 97.9 0.00036 7.9E-09 58.5 12.8 94 63-157 35-137 (168)
173 PF05843 Suf: Suppressor of fo 97.9 0.00027 5.9E-09 64.6 12.8 128 100-231 3-135 (280)
174 PF05843 Suf: Suppressor of fo 97.9 0.0003 6.6E-09 64.2 12.9 132 449-583 2-137 (280)
175 CHL00033 ycf3 photosystem I as 97.8 0.00044 9.5E-09 58.0 12.8 114 499-633 15-138 (168)
176 COG3898 Uncharacterized membra 97.8 0.026 5.6E-07 51.5 32.9 187 40-233 96-293 (531)
177 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.03 6.5E-07 52.1 37.2 131 448-582 397-531 (660)
178 PRK10803 tol-pal system protei 97.8 0.00045 9.8E-09 61.7 12.5 103 519-641 144-250 (263)
179 TIGR00756 PPR pentatricopeptid 97.8 5.1E-05 1.1E-09 43.8 4.4 31 241-271 3-33 (35)
180 TIGR00756 PPR pentatricopeptid 97.8 4.9E-05 1.1E-09 43.9 4.2 33 135-167 2-34 (35)
181 PRK10153 DNA-binding transcrip 97.8 0.0028 6.1E-08 63.0 18.6 145 408-558 332-491 (517)
182 PF14559 TPR_19: Tetratricopep 97.7 6.5E-05 1.4E-09 51.6 5.2 56 564-640 2-57 (68)
183 PF13812 PPR_3: Pentatricopept 97.7 6.2E-05 1.3E-09 43.0 4.3 30 241-270 4-33 (34)
184 PF13432 TPR_16: Tetratricopep 97.7 0.00015 3.4E-09 49.2 6.9 59 524-583 3-61 (65)
185 PF10037 MRP-S27: Mitochondria 97.7 0.00052 1.1E-08 65.1 12.3 121 340-460 63-185 (429)
186 PF14938 SNAP: Soluble NSF att 97.7 0.00097 2.1E-08 61.3 13.9 172 11-197 30-225 (282)
187 PF13371 TPR_9: Tetratricopept 97.7 0.00015 3.3E-09 50.6 6.7 61 560-641 2-62 (73)
188 PRK10866 outer membrane biogen 97.7 0.005 1.1E-07 54.7 17.7 66 62-127 31-98 (243)
189 PF13812 PPR_3: Pentatricopept 97.7 8.8E-05 1.9E-09 42.4 4.5 32 415-446 3-34 (34)
190 PF10037 MRP-S27: Mitochondria 97.7 0.0011 2.4E-08 62.9 13.8 121 410-530 63-185 (429)
191 PF13414 TPR_11: TPR repeat; P 97.7 0.00024 5.3E-09 48.9 7.1 66 517-583 2-68 (69)
192 PF14559 TPR_19: Tetratricopep 97.7 0.00016 3.5E-09 49.7 6.2 54 529-583 2-55 (68)
193 PRK10866 outer membrane biogen 97.7 0.01 2.3E-07 52.7 19.0 66 97-164 31-100 (243)
194 PF14938 SNAP: Soluble NSF att 97.6 0.0044 9.5E-08 57.0 17.0 125 498-639 89-227 (282)
195 PF07079 DUF1347: Protein of u 97.6 0.059 1.3E-06 50.4 44.1 123 393-523 395-530 (549)
196 KOG2796 Uncharacterized conser 97.6 0.04 8.7E-07 47.4 20.4 132 170-302 179-315 (366)
197 PRK15331 chaperone protein Sic 97.6 0.0011 2.4E-08 52.9 10.0 91 490-582 44-134 (165)
198 KOG1258 mRNA processing protei 97.5 0.11 2.4E-06 50.8 32.7 99 238-337 297-395 (577)
199 PF08579 RPM2: Mitochondrial r 97.5 0.0019 4E-08 47.4 9.7 75 385-459 32-115 (120)
200 PF08579 RPM2: Mitochondrial r 97.5 0.0021 4.5E-08 47.2 9.7 78 102-179 29-115 (120)
201 PF13525 YfiO: Outer membrane 97.4 0.028 6E-07 48.7 18.3 65 63-127 5-71 (203)
202 KOG2796 Uncharacterized conser 97.4 0.016 3.5E-07 49.7 15.5 134 449-583 178-316 (366)
203 PF01535 PPR: PPR repeat; Int 97.3 0.00035 7.6E-09 38.8 3.7 28 275-302 2-29 (31)
204 PF01535 PPR: PPR repeat; Int 97.3 0.00039 8.3E-09 38.6 3.7 29 240-268 2-30 (31)
205 PRK10803 tol-pal system protei 97.3 0.0045 9.8E-08 55.5 12.2 87 109-197 154-246 (263)
206 KOG1130 Predicted G-alpha GTPa 97.3 0.0042 9.2E-08 56.7 11.9 138 484-636 196-343 (639)
207 PF13371 TPR_9: Tetratricopept 97.3 0.0022 4.8E-08 44.7 8.1 57 526-583 3-59 (73)
208 KOG1130 Predicted G-alpha GTPa 97.3 0.011 2.4E-07 54.1 14.0 133 450-582 197-344 (639)
209 PF13525 YfiO: Outer membrane 97.3 0.11 2.4E-06 45.0 20.8 169 420-628 12-198 (203)
210 PF13281 DUF4071: Domain of un 97.2 0.07 1.5E-06 49.9 19.2 168 456-638 149-335 (374)
211 PF13424 TPR_12: Tetratricopep 97.2 0.00081 1.7E-08 47.7 5.5 68 554-636 6-74 (78)
212 KOG0543 FKBP-type peptidyl-pro 97.2 0.007 1.5E-07 55.7 12.4 98 518-637 257-355 (397)
213 PRK11906 transcriptional regul 97.2 0.012 2.6E-07 55.7 14.1 151 463-636 273-435 (458)
214 PF13281 DUF4071: Domain of un 97.2 0.14 3E-06 48.0 20.5 29 555-583 307-335 (374)
215 KOG1258 mRNA processing protei 97.2 0.28 6E-06 48.1 33.4 185 342-532 296-489 (577)
216 PF03704 BTAD: Bacterial trans 97.1 0.0081 1.8E-07 49.0 11.0 70 554-644 63-137 (146)
217 PRK11906 transcriptional regul 97.1 0.048 1E-06 51.8 16.8 148 428-581 273-435 (458)
218 PF06239 ECSIT: Evolutionarily 97.1 0.013 2.8E-07 49.2 11.7 34 185-218 120-153 (228)
219 COG1729 Uncharacterized protei 97.1 0.0089 1.9E-07 52.2 11.1 101 520-640 144-247 (262)
220 PRK15331 chaperone protein Sic 97.1 0.037 8.1E-07 44.5 13.6 85 40-126 49-133 (165)
221 PF06239 ECSIT: Evolutionarily 97.0 0.029 6.4E-07 47.1 13.0 104 445-567 44-152 (228)
222 COG1729 Uncharacterized protei 97.0 0.017 3.6E-07 50.5 12.0 90 73-162 151-244 (262)
223 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0049 1.1E-07 58.1 9.3 65 517-583 74-142 (453)
224 COG3118 Thioredoxin domain-con 96.9 0.2 4.4E-06 44.4 18.0 140 40-182 146-286 (304)
225 KOG4555 TPR repeat-containing 96.9 0.015 3.3E-07 43.8 9.6 90 492-583 52-145 (175)
226 PF03704 BTAD: Bacterial trans 96.9 0.13 2.9E-06 41.8 16.5 62 519-581 63-124 (146)
227 PF13424 TPR_12: Tetratricopep 96.9 0.0049 1.1E-07 43.6 7.0 64 518-581 5-74 (78)
228 PF13428 TPR_14: Tetratricopep 96.9 0.0034 7.4E-08 38.2 5.2 42 554-616 2-43 (44)
229 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.41 9E-06 45.0 39.6 440 49-511 30-530 (660)
230 KOG1538 Uncharacterized conser 96.8 0.2 4.4E-06 49.2 18.8 88 413-511 747-845 (1081)
231 KOG0543 FKBP-type peptidyl-pro 96.8 0.038 8.2E-07 51.1 13.5 95 65-161 259-354 (397)
232 KOG4555 TPR repeat-containing 96.8 0.029 6.4E-07 42.4 10.2 88 40-128 55-145 (175)
233 COG4105 ComL DNA uptake lipopr 96.7 0.35 7.6E-06 42.2 17.6 58 70-127 41-100 (254)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.036 7.9E-07 52.5 12.6 67 61-127 73-141 (453)
235 PF10300 DUF3808: Protein of u 96.7 0.14 3E-06 50.9 17.3 163 452-637 192-376 (468)
236 KOG2114 Vacuolar assembly/sort 96.6 1 2.2E-05 46.2 23.2 53 454-510 711-763 (933)
237 COG3118 Thioredoxin domain-con 96.5 0.39 8.5E-06 42.7 16.7 153 100-256 136-290 (304)
238 COG0457 NrfG FOG: TPR repeat [ 96.5 0.6 1.3E-05 42.0 29.7 165 380-546 61-230 (291)
239 KOG1538 Uncharacterized conser 96.4 0.35 7.7E-06 47.6 17.2 171 68-258 637-824 (1081)
240 KOG1585 Protein required for f 96.4 0.41 8.9E-06 41.1 15.5 91 171-262 153-251 (308)
241 KOG2396 HAT (Half-A-TPR) repea 96.4 0.97 2.1E-05 43.4 38.5 91 82-175 90-181 (568)
242 PF04184 ST7: ST7 protein; In 96.4 0.53 1.1E-05 45.2 17.9 145 424-583 179-325 (539)
243 KOG1585 Protein required for f 96.4 0.3 6.6E-06 41.8 14.5 206 64-296 32-250 (308)
244 COG4785 NlpI Lipoprotein NlpI, 96.3 0.36 7.8E-06 40.6 14.5 87 40-128 77-163 (297)
245 PF13431 TPR_17: Tetratricopep 96.3 0.0063 1.4E-07 34.3 3.3 25 605-629 10-34 (34)
246 PF04184 ST7: ST7 protein; In 96.3 0.35 7.7E-06 46.3 16.1 138 11-161 183-323 (539)
247 COG1747 Uncharacterized N-term 96.2 1.2 2.6E-05 42.9 20.3 167 446-638 64-235 (711)
248 KOG2610 Uncharacterized conser 96.2 0.15 3.1E-06 45.8 12.6 153 425-580 115-274 (491)
249 PF04840 Vps16_C: Vps16, C-ter 96.2 1.1 2.5E-05 41.7 26.1 109 239-367 178-286 (319)
250 PF13428 TPR_14: Tetratricopep 96.1 0.014 3.1E-07 35.4 4.6 39 65-104 3-41 (44)
251 PF13512 TPR_18: Tetratricopep 96.1 0.082 1.8E-06 41.5 9.5 56 40-95 22-79 (142)
252 KOG4234 TPR repeat-containing 96.1 0.084 1.8E-06 43.5 9.8 92 490-583 102-198 (271)
253 COG4649 Uncharacterized protei 96.1 0.6 1.3E-05 37.7 14.4 125 73-197 68-196 (221)
254 PF13512 TPR_18: Tetratricopep 96.0 0.33 7.1E-06 38.2 12.3 63 65-127 12-76 (142)
255 KOG2114 Vacuolar assembly/sort 96.0 2.3 5E-05 43.8 27.0 139 6-159 378-516 (933)
256 COG4649 Uncharacterized protei 96.0 0.66 1.4E-05 37.5 14.5 130 33-162 61-196 (221)
257 PF08631 SPO22: Meiosis protei 96.0 1.3 2.8E-05 40.7 23.8 123 74-197 4-150 (278)
258 PF12921 ATP13: Mitochondrial 95.9 0.18 3.9E-06 39.3 10.7 50 514-563 48-98 (126)
259 PF12921 ATP13: Mitochondrial 95.9 0.35 7.7E-06 37.6 12.2 83 447-529 1-99 (126)
260 PF08631 SPO22: Meiosis protei 95.9 1.4 3E-05 40.5 23.3 96 100-197 86-186 (278)
261 KOG2280 Vacuolar assembly/sort 95.8 2.6 5.5E-05 42.9 33.8 137 128-266 427-574 (829)
262 PF04053 Coatomer_WDAD: Coatom 95.8 0.38 8.3E-06 47.0 14.7 98 459-577 329-426 (443)
263 PF04840 Vps16_C: Vps16, C-ter 95.7 1.8 3.8E-05 40.4 30.6 106 380-505 179-284 (319)
264 KOG1941 Acetylcholine receptor 95.7 1.4 3E-05 40.4 16.3 165 417-581 87-274 (518)
265 PF10300 DUF3808: Protein of u 95.7 0.93 2E-05 45.2 17.2 118 461-581 246-375 (468)
266 KOG1941 Acetylcholine receptor 95.6 0.59 1.3E-05 42.7 13.9 170 450-635 85-273 (518)
267 PF04053 Coatomer_WDAD: Coatom 95.5 0.87 1.9E-05 44.6 16.1 159 71-263 269-427 (443)
268 KOG2610 Uncharacterized conser 95.5 0.99 2.2E-05 40.8 14.7 160 68-230 108-274 (491)
269 COG4785 NlpI Lipoprotein NlpI, 95.5 0.89 1.9E-05 38.3 13.3 182 5-197 74-266 (297)
270 COG2976 Uncharacterized protei 95.4 0.11 2.3E-06 42.9 7.9 112 14-128 70-189 (207)
271 PF07719 TPR_2: Tetratricopept 95.4 0.04 8.6E-07 31.1 4.2 32 608-639 1-32 (34)
272 PF00515 TPR_1: Tetratricopept 95.3 0.046 1E-06 30.8 4.2 32 608-639 1-32 (34)
273 COG4105 ComL DNA uptake lipopr 95.3 1.9 4.1E-05 37.8 22.0 60 558-635 172-231 (254)
274 COG2976 Uncharacterized protei 95.2 1.4 3.1E-05 36.6 13.7 26 613-638 164-189 (207)
275 KOG2280 Vacuolar assembly/sort 95.1 4.4 9.5E-05 41.3 36.1 108 485-631 686-793 (829)
276 KOG2396 HAT (Half-A-TPR) repea 95.1 3.4 7.4E-05 39.9 40.6 100 480-581 456-558 (568)
277 PF13431 TPR_17: Tetratricopep 94.9 0.022 4.7E-07 32.2 1.9 32 51-83 2-33 (34)
278 PF13176 TPR_7: Tetratricopept 94.8 0.066 1.4E-06 30.7 4.0 27 610-636 1-27 (36)
279 smart00299 CLH Clathrin heavy 94.7 1.8 3.9E-05 34.8 14.7 84 453-544 12-95 (140)
280 COG0457 NrfG FOG: TPR repeat [ 94.6 3.2 6.9E-05 37.1 29.9 223 321-547 36-265 (291)
281 PF09205 DUF1955: Domain of un 94.6 1.6 3.5E-05 33.5 15.4 137 425-583 14-150 (161)
282 KOG4234 TPR repeat-containing 94.5 0.52 1.1E-05 39.1 9.5 92 70-162 102-197 (271)
283 PF09613 HrpB1_HrpK: Bacterial 94.4 2.2 4.7E-05 34.5 12.6 72 70-144 17-88 (160)
284 KOG4648 Uncharacterized conser 94.4 0.13 2.7E-06 46.3 6.3 92 489-583 103-195 (536)
285 PF09613 HrpB1_HrpK: Bacterial 94.3 2.3 5E-05 34.4 13.7 51 494-546 21-72 (160)
286 PF02259 FAT: FAT domain; Int 94.3 5.4 0.00012 38.4 20.1 123 517-639 145-289 (352)
287 PF13176 TPR_7: Tetratricopept 94.2 0.12 2.7E-06 29.6 4.1 27 555-581 1-27 (36)
288 COG3629 DnrI DNA-binding trans 94.2 0.73 1.6E-05 41.4 10.7 62 519-581 154-215 (280)
289 KOG1550 Extracellular protein 94.1 8 0.00017 39.8 21.6 276 324-638 228-539 (552)
290 smart00299 CLH Clathrin heavy 93.8 2.9 6.2E-05 33.6 15.7 85 382-474 11-95 (140)
291 PF13170 DUF4003: Protein of u 93.7 5.6 0.00012 36.7 17.5 26 220-245 199-224 (297)
292 PF10602 RPN7: 26S proteasome 93.7 1.1 2.5E-05 37.5 10.6 60 486-545 39-100 (177)
293 PF10602 RPN7: 26S proteasome 93.5 1.3 2.8E-05 37.2 10.5 97 64-160 37-140 (177)
294 PF09205 DUF1955: Domain of un 93.5 2.8 6E-05 32.3 17.2 140 459-640 13-152 (161)
295 KOG1920 IkappaB kinase complex 93.3 3.8 8.2E-05 44.2 15.3 159 76-265 893-1053(1265)
296 PF02259 FAT: FAT domain; Int 93.2 8.4 0.00018 37.0 23.1 66 481-546 144-212 (352)
297 KOG4642 Chaperone-dependent E3 93.2 2.1 4.5E-05 36.9 11.0 82 496-581 23-106 (284)
298 PF07719 TPR_2: Tetratricopept 93.2 0.33 7.1E-06 27.2 4.7 30 554-583 2-31 (34)
299 PF07035 Mic1: Colon cancer-as 93.0 4.3 9.4E-05 33.3 15.3 28 124-151 20-47 (167)
300 COG3629 DnrI DNA-binding trans 93.0 0.84 1.8E-05 41.0 9.0 70 553-643 153-227 (280)
301 KOG3941 Intermediate in Toll s 92.7 0.73 1.6E-05 40.5 8.0 34 255-288 140-173 (406)
302 KOG4648 Uncharacterized conser 92.6 0.75 1.6E-05 41.7 8.0 92 69-162 103-194 (536)
303 PF13174 TPR_6: Tetratricopept 92.5 0.16 3.5E-06 28.2 2.8 30 610-639 2-31 (33)
304 PF13181 TPR_8: Tetratricopept 92.4 0.22 4.8E-06 27.9 3.3 31 609-639 2-32 (34)
305 TIGR02561 HrpB1_HrpK type III 92.3 4 8.6E-05 32.5 10.7 53 74-127 21-73 (153)
306 PF00515 TPR_1: Tetratricopept 92.1 0.39 8.4E-06 26.9 4.0 26 521-546 4-29 (34)
307 KOG3941 Intermediate in Toll s 91.9 2.3 4.9E-05 37.6 9.9 49 377-425 66-119 (406)
308 KOG0276 Vesicle coat complex C 91.6 4 8.8E-05 40.4 12.2 102 72-194 646-747 (794)
309 KOG4570 Uncharacterized conser 91.4 4.9 0.00011 36.3 11.5 105 372-478 58-165 (418)
310 KOG0890 Protein kinase of the 91.3 38 0.00083 40.3 25.6 316 278-637 1388-1731(2382)
311 KOG1550 Extracellular protein 90.6 23 0.00049 36.6 28.3 277 288-583 227-539 (552)
312 TIGR02561 HrpB1_HrpK type III 90.6 7.4 0.00016 31.0 11.9 53 40-93 22-74 (153)
313 PF07035 Mic1: Colon cancer-as 90.6 8.6 0.00019 31.7 14.8 135 153-301 14-148 (167)
314 PF10345 Cohesin_load: Cohesin 90.6 25 0.00053 36.9 37.5 193 30-229 29-251 (608)
315 PF13374 TPR_10: Tetratricopep 90.3 0.74 1.6E-05 27.2 4.3 29 608-636 2-30 (42)
316 PF06552 TOM20_plant: Plant sp 90.3 3 6.6E-05 34.3 8.7 27 535-563 97-123 (186)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 90.2 3.3 7E-05 29.9 7.6 45 501-545 25-69 (103)
318 PRK11619 lytic murein transgly 90.2 27 0.00058 36.7 34.7 168 461-637 254-436 (644)
319 TIGR03504 FimV_Cterm FimV C-te 89.8 0.69 1.5E-05 27.8 3.6 25 2-26 5-29 (44)
320 COG2909 MalT ATP-dependent tra 89.7 30 0.00066 36.6 25.3 224 352-578 424-684 (894)
321 PF06552 TOM20_plant: Plant sp 89.4 1.9 4.1E-05 35.5 6.9 84 534-639 7-111 (186)
322 PF07721 TPR_4: Tetratricopept 89.4 0.5 1.1E-05 24.5 2.5 23 610-632 3-25 (26)
323 KOG1586 Protein required for f 89.2 14 0.0003 32.1 17.5 168 14-200 3-186 (288)
324 KOG1308 Hsp70-interacting prot 89.2 0.17 3.8E-06 45.6 1.1 118 494-636 125-243 (377)
325 KOG1586 Protein required for f 89.1 14 0.00031 32.0 20.6 27 557-583 158-184 (288)
326 PF08424 NRDE-2: NRDE-2, neces 89.1 20 0.00044 33.8 16.3 78 80-159 48-128 (321)
327 PF09986 DUF2225: Uncharacteri 89.0 8.4 0.00018 33.6 11.2 103 531-641 90-198 (214)
328 TIGR03504 FimV_Cterm FimV C-te 88.9 0.63 1.4E-05 28.0 3.0 27 612-638 3-29 (44)
329 PRK15180 Vi polysaccharide bio 88.5 25 0.00054 34.1 30.8 25 620-644 788-812 (831)
330 PF11207 DUF2989: Protein of u 88.5 8 0.00017 32.7 10.1 76 535-628 123-198 (203)
331 KOG0890 Protein kinase of the 88.4 64 0.0014 38.7 31.1 322 208-548 1388-1732(2382)
332 PF02284 COX5A: Cytochrome c o 88.4 8.1 0.00018 28.3 9.1 46 501-546 28-73 (108)
333 COG0790 FOG: TPR repeat, SEL1 88.4 21 0.00046 33.2 23.7 45 536-583 173-221 (292)
334 PF13374 TPR_10: Tetratricopep 88.2 1.4 2.9E-05 26.0 4.4 28 554-581 3-30 (42)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 4.5 9.8E-05 29.2 7.1 62 463-525 22-83 (103)
336 PF02284 COX5A: Cytochrome c o 87.9 8.8 0.00019 28.1 9.1 63 521-583 11-75 (108)
337 KOG4521 Nuclear pore complex, 87.9 22 0.00048 38.7 14.8 135 1-150 925-1071(1480)
338 PF13181 TPR_8: Tetratricopept 87.7 1.7 3.7E-05 24.1 4.3 30 554-583 2-31 (34)
339 PF13174 TPR_6: Tetratricopept 87.7 0.71 1.5E-05 25.5 2.7 21 105-125 7-27 (33)
340 KOG1464 COP9 signalosome, subu 87.6 19 0.00042 31.8 17.1 59 418-476 150-219 (440)
341 PRK09687 putative lyase; Provi 87.6 23 0.0005 32.6 28.1 188 412-638 67-264 (280)
342 KOG3364 Membrane protein invol 87.3 8.3 0.00018 30.0 8.6 68 515-583 29-101 (149)
343 KOG0276 Vesicle coat complex C 87.3 23 0.00049 35.6 13.6 42 146-193 650-691 (794)
344 KOG0545 Aryl-hydrocarbon recep 86.5 22 0.00047 31.2 13.2 58 525-583 237-294 (329)
345 PF07721 TPR_4: Tetratricopept 86.1 1.1 2.3E-05 23.3 2.5 22 66-87 4-25 (26)
346 PF11207 DUF2989: Protein of u 85.9 21 0.00045 30.4 11.8 77 145-223 119-198 (203)
347 PF00637 Clathrin: Region in C 85.9 0.19 4.1E-06 40.7 -0.5 124 490-624 14-141 (143)
348 KOG2066 Vacuolar assembly/sort 85.7 49 0.0011 34.5 27.2 21 279-299 511-531 (846)
349 PF08424 NRDE-2: NRDE-2, neces 85.3 34 0.00073 32.3 18.9 130 500-639 48-185 (321)
350 PF10579 Rapsyn_N: Rapsyn N-te 84.9 3.3 7.1E-05 28.6 5.0 49 530-578 18-68 (80)
351 smart00028 TPR Tetratricopepti 84.9 1.4 3.1E-05 23.6 3.1 31 609-639 2-32 (34)
352 PF13170 DUF4003: Protein of u 84.8 33 0.00072 31.8 22.3 23 431-453 200-222 (297)
353 KOG1920 IkappaB kinase complex 84.8 69 0.0015 35.4 25.2 82 348-441 944-1027(1265)
354 KOG2471 TPR repeat-containing 84.2 44 0.00095 32.7 14.0 41 215-255 29-69 (696)
355 PF04097 Nic96: Nup93/Nic96; 83.6 62 0.0013 34.0 23.8 90 313-407 263-356 (613)
356 KOG4642 Chaperone-dependent E3 83.1 21 0.00046 31.1 10.1 114 42-158 24-142 (284)
357 KOG4507 Uncharacterized conser 82.3 6.5 0.00014 38.9 7.7 95 486-583 610-706 (886)
358 PF13929 mRNA_stabil: mRNA sta 82.3 39 0.00085 30.7 15.6 116 148-263 143-263 (292)
359 COG3947 Response regulator con 82.1 39 0.00084 30.6 16.5 59 555-634 281-339 (361)
360 KOG4570 Uncharacterized conser 82.1 13 0.00027 33.9 8.8 103 443-547 59-164 (418)
361 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 3.5 7.6E-05 26.1 4.0 31 609-639 2-32 (53)
362 KOG0545 Aryl-hydrocarbon recep 81.6 36 0.00079 29.9 10.9 62 65-127 232-293 (329)
363 KOG4507 Uncharacterized conser 80.2 19 0.00041 35.9 10.0 145 29-179 569-721 (886)
364 PRK09687 putative lyase; Provi 80.0 50 0.0011 30.4 28.4 123 447-583 141-264 (280)
365 COG4455 ImpE Protein of avirul 79.4 18 0.0004 31.0 8.4 54 420-474 8-61 (273)
366 PF07163 Pex26: Pex26 protein; 78.8 28 0.0006 31.3 9.6 85 420-506 90-181 (309)
367 PF14561 TPR_20: Tetratricopep 78.8 21 0.00045 25.9 7.7 62 51-113 11-73 (90)
368 PF14561 TPR_20: Tetratricopep 78.7 12 0.00026 27.2 6.4 37 605-641 19-55 (90)
369 KOG1308 Hsp70-interacting prot 78.3 4.3 9.4E-05 37.2 4.9 120 459-583 125-245 (377)
370 PF14853 Fis1_TPR_C: Fis1 C-te 78.2 5.1 0.00011 25.4 3.9 35 2-38 7-41 (53)
371 PRK10941 hypothetical protein; 78.2 18 0.00038 32.9 8.8 63 556-639 184-246 (269)
372 smart00028 TPR Tetratricopepti 77.7 4 8.6E-05 21.6 3.3 27 65-91 3-29 (34)
373 PF04910 Tcf25: Transcriptiona 77.4 71 0.0015 30.8 16.6 100 61-160 38-166 (360)
374 PF00637 Clathrin: Region in C 77.3 0.94 2E-05 36.6 0.6 84 209-299 13-96 (143)
375 PF08311 Mad3_BUB1_I: Mad3/BUB 77.3 25 0.00055 27.5 8.4 44 536-579 81-125 (126)
376 PF04097 Nic96: Nup93/Nic96; 77.2 1E+02 0.0022 32.5 19.9 88 384-476 264-355 (613)
377 KOG3807 Predicted membrane pro 76.5 63 0.0014 29.8 15.9 15 627-641 381-395 (556)
378 PF09986 DUF2225: Uncharacteri 76.2 41 0.00088 29.4 10.2 65 519-583 119-195 (214)
379 KOG4279 Serine/threonine prote 76.0 96 0.0021 32.4 13.5 23 617-639 375-397 (1226)
380 KOG1464 COP9 signalosome, subu 75.4 60 0.0013 29.0 19.9 186 358-545 42-258 (440)
381 PF10345 Cohesin_load: Cohesin 74.8 1.2E+02 0.0025 32.0 40.2 192 389-581 372-605 (608)
382 KOG4077 Cytochrome c oxidase, 74.7 29 0.00063 26.7 7.5 41 542-582 73-113 (149)
383 PRK12798 chemotaxis protein; R 74.0 89 0.0019 30.2 21.7 28 555-582 259-286 (421)
384 KOG2066 Vacuolar assembly/sort 73.9 1.2E+02 0.0027 31.9 31.0 104 70-180 363-467 (846)
385 COG4455 ImpE Protein of avirul 73.5 60 0.0013 28.1 13.4 72 487-561 5-80 (273)
386 PRK11619 lytic murein transgly 73.1 1.3E+02 0.0028 31.8 39.3 75 103-183 104-178 (644)
387 KOG2471 TPR repeat-containing 72.8 1E+02 0.0022 30.4 16.3 109 492-621 249-382 (696)
388 PF10579 Rapsyn_N: Rapsyn N-te 72.7 16 0.00035 25.4 5.3 52 563-633 16-68 (80)
389 PF07575 Nucleopor_Nup85: Nup8 72.4 1.3E+02 0.0028 31.4 17.8 26 98-124 149-174 (566)
390 PRK10941 hypothetical protein; 72.3 67 0.0015 29.3 10.9 61 522-583 185-245 (269)
391 PF12862 Apc5: Anaphase-promot 71.8 23 0.0005 25.9 6.7 58 563-636 8-69 (94)
392 COG1747 Uncharacterized N-term 71.3 1.1E+02 0.0025 30.3 26.3 167 339-512 62-234 (711)
393 PF07163 Pex26: Pex26 protein; 71.0 74 0.0016 28.8 10.3 59 343-401 118-181 (309)
394 PF14689 SPOB_a: Sensor_kinase 70.9 12 0.00026 24.8 4.4 46 534-581 6-51 (62)
395 COG3947 Response regulator con 70.7 84 0.0018 28.6 16.3 57 488-545 284-340 (361)
396 KOG3364 Membrane protein invol 70.6 51 0.0011 26.0 9.4 72 480-554 29-105 (149)
397 KOG0128 RNA-binding protein SA 70.4 1.5E+02 0.0033 31.5 31.5 97 63-162 113-219 (881)
398 PF07575 Nucleopor_Nup85: Nup8 70.2 1.4E+02 0.0031 31.1 18.7 29 412-440 404-432 (566)
399 COG4941 Predicted RNA polymera 70.0 95 0.0021 28.9 11.2 118 463-583 271-395 (415)
400 KOG2062 26S proteasome regulat 70.0 1.5E+02 0.0032 31.1 32.0 119 424-546 512-634 (929)
401 smart00777 Mad3_BUB1_I Mad3/BU 69.1 47 0.001 25.9 7.9 43 535-577 80-123 (125)
402 KOG0530 Protein farnesyltransf 69.1 86 0.0019 28.1 13.4 122 459-583 54-177 (318)
403 KOG0376 Serine-threonine phosp 68.8 7 0.00015 37.8 4.1 91 489-583 10-102 (476)
404 PF09477 Type_III_YscG: Bacter 67.8 49 0.0011 24.7 8.6 79 43-128 21-99 (116)
405 KOG4077 Cytochrome c oxidase, 67.5 46 0.001 25.7 7.2 41 471-511 72-112 (149)
406 PF09670 Cas_Cas02710: CRISPR- 66.9 1.3E+02 0.0028 29.3 12.3 56 421-477 139-198 (379)
407 PF13929 mRNA_stabil: mRNA sta 66.8 1E+02 0.0022 28.1 18.1 133 289-421 144-286 (292)
408 PF12862 Apc5: Anaphase-promot 66.8 39 0.00084 24.7 7.0 28 555-582 43-70 (94)
409 KOG0551 Hsp90 co-chaperone CNS 66.5 41 0.0009 31.1 8.1 97 484-582 82-182 (390)
410 COG4976 Predicted methyltransf 66.5 14 0.00031 31.9 5.0 58 562-640 4-61 (287)
411 KOG0376 Serine-threonine phosp 65.8 16 0.00034 35.5 5.8 100 40-143 16-115 (476)
412 PHA02537 M terminase endonucle 64.8 92 0.002 27.5 9.7 33 608-640 169-210 (230)
413 COG0790 FOG: TPR repeat, SEL1 64.6 1.2E+02 0.0026 28.1 24.9 146 428-583 92-267 (292)
414 KOG2062 26S proteasome regulat 64.3 1.9E+02 0.0042 30.4 38.6 176 46-232 41-239 (929)
415 KOG2908 26S proteasome regulat 64.2 94 0.002 29.0 9.8 52 460-511 87-143 (380)
416 KOG3807 Predicted membrane pro 63.9 1.2E+02 0.0027 28.0 13.9 57 102-160 279-338 (556)
417 KOG3824 Huntingtin interacting 63.8 17 0.00037 32.8 5.2 62 563-645 126-187 (472)
418 KOG0991 Replication factor C, 63.5 1E+02 0.0023 27.0 11.6 89 40-131 171-271 (333)
419 smart00386 HAT HAT (Half-A-TPR 62.5 22 0.00048 19.0 4.4 17 567-583 1-17 (33)
420 PF00244 14-3-3: 14-3-3 protei 61.6 1.1E+02 0.0023 27.4 10.0 20 618-637 179-198 (236)
421 PF11846 DUF3366: Domain of un 60.6 46 0.00099 28.6 7.4 33 514-546 140-172 (193)
422 PF11817 Foie-gras_1: Foie gra 60.1 1.3E+02 0.0029 27.1 14.8 56 2-59 16-80 (247)
423 PF11846 DUF3366: Domain of un 60.0 51 0.0011 28.2 7.6 33 605-637 141-173 (193)
424 PF07720 TPR_3: Tetratricopept 59.3 32 0.00069 19.7 4.2 28 609-636 2-31 (36)
425 TIGR02508 type_III_yscG type I 57.0 77 0.0017 23.4 8.3 15 108-122 49-63 (115)
426 KOG0686 COP9 signalosome, subu 56.9 99 0.0022 29.7 8.9 60 486-545 153-214 (466)
427 PF14689 SPOB_a: Sensor_kinase 56.9 31 0.00068 22.8 4.4 30 517-546 22-51 (62)
428 PF02184 HAT: HAT (Half-A-TPR) 55.2 31 0.00068 19.1 3.4 24 534-559 3-26 (32)
429 COG0735 Fur Fe2+/Zn2+ uptake r 54.7 1E+02 0.0022 24.9 7.9 61 507-568 10-70 (145)
430 PF09670 Cas_Cas02710: CRISPR- 54.5 1.1E+02 0.0025 29.7 9.6 52 40-92 143-198 (379)
431 COG4976 Predicted methyltransf 53.6 27 0.00059 30.3 4.5 54 529-583 6-59 (287)
432 COG5159 RPN6 26S proteasome re 53.2 1.8E+02 0.0039 26.5 14.3 198 69-266 9-234 (421)
433 PF11848 DUF3368: Domain of un 53.0 53 0.0011 20.3 5.0 34 6-39 12-45 (48)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 52.7 1.1E+02 0.0024 23.9 9.0 83 530-634 38-125 (126)
435 COG2909 MalT ATP-dependent tra 52.5 3.4E+02 0.0073 29.5 35.5 90 72-161 424-525 (894)
436 COG4259 Uncharacterized protei 52.2 54 0.0012 24.0 5.1 33 604-636 68-100 (121)
437 KOG2422 Uncharacterized conser 51.8 2.8E+02 0.0061 28.3 17.9 154 43-196 253-447 (665)
438 PF11663 Toxin_YhaV: Toxin wit 51.4 19 0.00041 28.1 3.0 27 147-175 109-135 (140)
439 PF13934 ELYS: Nuclear pore co 50.7 1.8E+02 0.0039 25.8 10.6 114 31-155 76-198 (226)
440 KOG0403 Neoplastic transformat 50.2 2.6E+02 0.0056 27.4 29.0 59 452-513 513-573 (645)
441 cd02680 MIT_calpain7_2 MIT: do 50.1 35 0.00075 23.6 3.9 15 569-583 3-17 (75)
442 KOG0128 RNA-binding protein SA 49.8 3.6E+02 0.0078 29.0 36.4 110 464-574 442-555 (881)
443 PF03745 DUF309: Domain of unk 49.5 75 0.0016 21.0 6.2 49 72-120 8-61 (62)
444 KOG2063 Vacuolar assembly/sort 49.4 3.9E+02 0.0085 29.3 17.4 114 171-284 507-637 (877)
445 PRK13800 putative oxidoreducta 48.7 4.3E+02 0.0094 29.6 26.9 248 95-371 632-880 (897)
446 PF00244 14-3-3: 14-3-3 protei 48.3 2E+02 0.0044 25.7 11.0 56 384-439 7-63 (236)
447 KOG0292 Vesicle coat complex C 48.3 2.4E+02 0.0051 30.5 10.7 130 73-232 653-782 (1202)
448 PRK09857 putative transposase; 47.9 1.7E+02 0.0036 27.3 9.2 54 529-583 217-270 (292)
449 PF04190 DUF410: Protein of un 47.7 2.2E+02 0.0048 25.9 15.4 26 131-156 88-113 (260)
450 PF10516 SHNi-TPR: SHNi-TPR; 47.5 48 0.001 19.3 3.6 28 609-636 2-29 (38)
451 PF10366 Vps39_1: Vacuolar sor 46.7 1.3E+02 0.0027 22.9 7.6 49 34-91 17-67 (108)
452 PF11663 Toxin_YhaV: Toxin wit 46.3 25 0.00053 27.5 3.0 33 248-282 105-137 (140)
453 COG0735 Fur Fe2+/Zn2+ uptake r 45.8 1.2E+02 0.0026 24.6 7.0 47 66-112 23-69 (145)
454 cd00280 TRFH Telomeric Repeat 45.4 1.3E+02 0.0028 25.4 6.9 21 246-266 119-139 (200)
455 PF11817 Foie-gras_1: Foie gra 45.2 1.2E+02 0.0025 27.4 7.7 58 522-579 182-244 (247)
456 KOG2168 Cullins [Cell cycle co 44.3 4.4E+02 0.0096 28.5 21.4 25 242-266 329-353 (835)
457 PRK13800 putative oxidoreducta 44.2 5.1E+02 0.011 29.1 26.8 154 446-636 726-880 (897)
458 PRK12798 chemotaxis protein; R 44.0 3.2E+02 0.0069 26.7 19.0 224 40-273 93-330 (421)
459 KOG0551 Hsp90 co-chaperone CNS 43.7 2.8E+02 0.0062 26.1 10.1 96 449-546 82-181 (390)
460 cd08819 CARD_MDA5_2 Caspase ac 43.3 1.2E+02 0.0027 21.7 6.7 35 110-149 48-82 (88)
461 KOG4521 Nuclear pore complex, 43.1 5.4E+02 0.012 29.1 15.2 84 485-571 985-1072(1480)
462 PRK15180 Vi polysaccharide bio 42.6 3.5E+02 0.0076 26.8 32.4 20 564-583 787-806 (831)
463 KOG2034 Vacuolar sorting prote 41.3 5E+02 0.011 28.2 24.8 49 70-124 365-415 (911)
464 KOG0403 Neoplastic transformat 41.1 3.6E+02 0.0078 26.5 27.5 59 487-548 513-573 (645)
465 cd00280 TRFH Telomeric Repeat 40.9 1.6E+02 0.0035 24.8 6.9 21 386-406 119-139 (200)
466 KOG2422 Uncharacterized conser 40.9 4.2E+02 0.0091 27.2 16.5 96 525-637 349-448 (665)
467 PF04190 DUF410: Protein of un 40.5 2.9E+02 0.0062 25.2 16.9 23 237-259 89-111 (260)
468 KOG0991 Replication factor C, 40.1 2.7E+02 0.0058 24.7 11.3 140 488-644 135-274 (333)
469 PF04910 Tcf25: Transcriptiona 39.6 3.6E+02 0.0078 26.1 20.3 140 490-636 110-291 (360)
470 PHA02875 ankyrin repeat protei 39.5 3.9E+02 0.0084 26.4 13.4 16 141-156 73-88 (413)
471 KOG0686 COP9 signalosome, subu 39.3 3.7E+02 0.008 26.1 14.4 161 346-511 153-332 (466)
472 TIGR02508 type_III_yscG type I 39.2 1.6E+02 0.0035 21.9 9.2 78 464-548 21-98 (115)
473 COG5191 Uncharacterized conser 38.6 85 0.0019 28.8 5.5 81 94-176 103-184 (435)
474 PRK10564 maltose regulon perip 38.4 84 0.0018 28.9 5.5 35 96-130 254-289 (303)
475 PF11848 DUF3368: Domain of un 38.2 98 0.0021 19.1 5.1 27 111-137 15-41 (48)
476 KOG4567 GTPase-activating prot 37.8 2.2E+02 0.0047 26.4 7.7 41 225-265 265-305 (370)
477 cd08819 CARD_MDA5_2 Caspase ac 35.8 1.7E+02 0.0036 21.1 6.6 14 217-230 50-63 (88)
478 COG5191 Uncharacterized conser 34.8 83 0.0018 28.9 4.8 82 514-617 103-185 (435)
479 PHA02875 ankyrin repeat protei 34.6 4.6E+02 0.01 25.9 13.9 11 501-511 298-308 (413)
480 cd02681 MIT_calpain7_1 MIT: do 34.5 82 0.0018 22.0 3.8 16 620-635 18-33 (76)
481 PF04124 Dor1: Dor1-like famil 34.4 94 0.002 29.7 5.7 38 2-39 112-150 (338)
482 PF09477 Type_III_YscG: Bacter 34.3 2E+02 0.0044 21.7 9.2 81 76-163 19-99 (116)
483 PF04212 MIT: MIT (microtubule 34.3 77 0.0017 21.4 3.8 16 620-635 17-32 (69)
484 KOG0687 26S proteasome regulat 34.3 4E+02 0.0087 25.0 14.2 65 484-548 105-174 (393)
485 PRK09462 fur ferric uptake reg 34.2 2.5E+02 0.0055 22.7 8.1 58 511-569 10-68 (148)
486 COG4259 Uncharacterized protei 34.1 1.9E+02 0.0042 21.3 6.4 43 503-545 57-99 (121)
487 PRK10564 maltose regulon perip 33.4 95 0.0021 28.6 5.0 27 453-479 262-288 (303)
488 PRK13342 recombination factor 33.1 5E+02 0.011 25.8 19.6 18 497-514 244-261 (413)
489 PF06957 COPI_C: Coatomer (COP 32.8 3.1E+02 0.0067 27.0 8.6 28 100-127 302-329 (422)
490 PF10255 Paf67: RNA polymerase 32.7 2.1E+02 0.0045 28.0 7.4 61 205-265 124-191 (404)
491 PF03745 DUF309: Domain of unk 32.6 1.5E+02 0.0033 19.6 5.0 17 7-23 10-26 (62)
492 cd07153 Fur_like Ferric uptake 32.5 1.4E+02 0.0031 22.7 5.5 47 524-570 6-52 (116)
493 KOG2659 LisH motif-containing 32.2 3.6E+02 0.0077 23.8 8.7 21 525-545 71-91 (228)
494 KOG2297 Predicted translation 32.0 4.2E+02 0.0091 24.6 14.6 67 182-257 269-340 (412)
495 PF10475 DUF2450: Protein of u 32.0 4.2E+02 0.0092 24.6 10.1 51 245-301 105-155 (291)
496 PF09454 Vps23_core: Vps23 cor 31.8 1.2E+02 0.0027 20.3 4.2 51 549-620 4-54 (65)
497 KOG2063 Vacuolar assembly/sort 31.1 7.7E+02 0.017 27.3 23.3 130 275-425 506-638 (877)
498 cd02683 MIT_1 MIT: domain cont 31.0 1E+02 0.0022 21.5 3.9 8 621-628 19-26 (77)
499 PF10255 Paf67: RNA polymerase 31.0 2.1E+02 0.0046 27.9 7.2 69 554-635 123-191 (404)
500 PRK11639 zinc uptake transcrip 30.6 2.5E+02 0.0055 23.4 6.9 36 77-112 39-74 (169)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.6e-76 Score=622.12 Aligned_cols=618 Identities=17% Similarity=0.253 Sum_probs=536.3
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHH-----------------------------------HHHHH---hcCC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTY-----------------------------------NSLLY---NLRH 43 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~ll~---~~~~ 43 (647)
++..|.+.|++++|..+|+.+.+.|+.|+..++ +.++. +.|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 456677777777777777777776655555554 44444 5677
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 006396 44 TDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCL 123 (647)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 123 (647)
++.|.++|+.+.. +|..+|+.++.+|.+.|++++|..+|++|...|+.||..+|..++.+|...+++..+.+++..
T Consensus 137 ~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 7777777777754 677888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc
Q 006396 124 MLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDI 203 (647)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (647)
+.+.|+.|+..+++.++.+|++.|++++|.++|++| ..||..+|+.++.+|.+.|++++|+++|++|...|+.||.
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 888888888888999999999999999999999998 4678899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006396 204 VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGL 283 (647)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (647)
.+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~ 364 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGY 364 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 56888999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006396 284 CKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAV 363 (647)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 363 (647)
++.|++++|+++|++|.+.|+.|+..++..++.+|++.|+++.+.++++.+.+.|..++..+++.++.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 364 QLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
++|++|.+ +|..+|+.++.+|.+.|+.++|..+|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 99998864 5888999999999999999999999999976 588999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 444 IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNI 523 (647)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 523 (647)
+.++..+++.++.+|++.|+.++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 8888888999999999999999998888876 67888999999999999999999999999998888999999999
Q ss_pred HHHHHhhcCChhhHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh--
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQ-EHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML-- 600 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 600 (647)
++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.++.+.|++++|.+++++| .+.|+...|..++.....
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998 5788899999999999999999999999998887 367777777644432211
Q ss_pred ------------hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 601 ------------SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 601 ------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
-.--|.+...|..+.+.|...|+|++|.++.+.|.+.|++++..
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 01125567888889999999999999999999999999998764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-74 Score=613.02 Aligned_cols=592 Identities=18% Similarity=0.251 Sum_probs=387.9
Q ss_pred CcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHH
Q 006396 28 KVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAI 104 (647)
Q Consensus 28 ~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 104 (647)
.|+...++.++. +.|++++|..+|+.+...+.+++..+|..++..+...+.++.+..++..+...++.++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 356667777777 88999999999999998888888888877777777777777777777777766666666667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 006396 105 MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQI 184 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (647)
+..|.+.|+.+.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.++...+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 777777777777777777765 4566677777777777777777777777777667777777777777776666666
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
..+.+++..+.+.|..||..+++.++..|++.|+++.|.++|+.|.. +|..+|+.++.+|++.|+.++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666766666666666642 46666666666666666666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 006396 265 EAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV 344 (647)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 344 (647)
...|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.++..|++.|++++|.++|+.+. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 66666666666666666666666666666666666666666666666666666666666666666666654 24566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (647)
+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 504 (647)
+.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|+++.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 66666666666666643 3555666666666666666666666666654 355666655555555555555555555
Q ss_pred HHHHHHhCCCC------------------------------CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 505 LLNQMWLHNLE------------------------------PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 505 ~~~~~~~~~~~------------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
++..+.+.|+. ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 55555544444 455555555555555555555555565555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCcccchhhhhH------------HHHhhhhCCCCCCHHHHHHHHHHHHcC
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMV-EKGFEISIRDYTKS------------FFCMMLSNGFPPDQEICEVMLIAFHQG 621 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (647)
||..++.+|.+.|++++|.++|+.|. +.++.|+..+|..+ ...+....++.|+..+|..|+.+|..+
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 55555555555566666666665555 45555555555422 122233334455555555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 006396 622 GDLGSVFELAAVMIK 636 (647)
Q Consensus 622 g~~~~A~~~~~~~~~ 636 (647)
|+.+.|....+++.+
T Consensus 671 ~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 671 RHVELGELAAQHIFE 685 (857)
T ss_pred CChHHHHHHHHHHHh
Confidence 555555555555554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-68 Score=549.18 Aligned_cols=546 Identities=17% Similarity=0.227 Sum_probs=461.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCC-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEF-GPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
++...|..+...+++.|++++|+++|++|...++ .++..++..++..|.+.|..++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4566778888888888888899999988888775 34566677788888888888888888888863 788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888898999888888888888889999999988889989999999888888888888899889988888999
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA--VGLKPDLVTYSILIRGLCKQDKVHKAIQLYN 297 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (647)
++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89998888888888888888899999999888888889998888876 5778888888889888888898888999998
Q ss_pred HHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006396 298 EMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS 377 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (647)
.|.+.++.|+..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG 457 (647)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (647)
..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
|++.|++++|.++++.|.+.|+.||..+|+.++..|. +.+++|..+.+.+...+ + +......+..+.|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~A 831 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWA 831 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHH
Confidence 8888888888888888888888888888888886554 24566655544443311 0 1111122345679
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
..+|++|.+.|+.||..+|..++.+++..+..+.+..+++.+...+ .+|+..+|+.++.+
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~--------------------~~~~~~~y~~Li~g 891 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA--------------------DSQKQSNLSTLVDG 891 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC--------------------CCcchhhhHHHHHh
Confidence 9999999999999999999999988888888888888888776555 58889999999998
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 618 FHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8432 368999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.1e-67 Score=542.98 Aligned_cols=544 Identities=18% Similarity=0.244 Sum_probs=483.2
Q ss_pred CcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHH
Q 006396 28 KVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSET-PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNA 103 (647)
Q Consensus 28 ~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (647)
.++...+..++. +.|++++|+++|+.|...+. +++...+..++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 345555555555 77999999999999998775 45666777889999999999999999999874 89999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 006396 104 IMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ 183 (647)
Q Consensus 104 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (647)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 184 ISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS--QGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
+++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|+.|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 006396 262 YEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQ 341 (647)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 341 (647)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|..++.+|++.|++++|.++++.+.+.+..|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 421 (647)
+..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 501 (647)
+|++.|+++.|..+|++|.+.|+.||..+|+.++..|.+ +++++..+.+.+.... + .......+..+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 999999999999999999999999999999999876542 4555555544433211 0 001111223456
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 502 AFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 502 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
|..+|++|.+.|+.||..+|+.++.++...+....+..+++.|...+..|+..+|+.++.++.+. .++|..++++|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 88888888888888888888888877777777777777777777666677777888888876322 3578888888888
Q ss_pred cCCcccch
Q 006396 582 KGFEISIR 589 (647)
Q Consensus 582 ~~~~~~~~ 589 (647)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 88877764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-61 Score=500.04 Aligned_cols=473 Identities=18% Similarity=0.258 Sum_probs=290.4
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG-LHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILA 175 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (647)
+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34456666777777777777777777666543 45666677777777777777777777777776666666777777777
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
.+|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|.+.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 77777777777777776664 35666677777777666777777777776666666666666666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHH
Q 006396 256 EALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI 335 (647)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 335 (647)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|..
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------------------------------- 287 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---------------------------------- 287 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------
Confidence 6666666666666666666666666666666666666666666532
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006396 336 MSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVT 415 (647)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 415 (647)
+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 288 -----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 288 -----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred -----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 244455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
++.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 5555555555555555555555554 245555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWL-HNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++ +..|+..+|..++.+|...|+++.|..
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 5555555555555554 455555555555555555555555555555443 245555555555555555555555555
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+++++.+.+ |.+...|..++..|.+.|++++|.++++.|.+.|+.
T Consensus 516 ~~~~l~~~~---------------------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 516 AAEKLYGMG---------------------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHhCCC---------------------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 555555433 334455555555555556666666555555555554
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-61 Score=497.60 Aligned_cols=512 Identities=17% Similarity=0.297 Sum_probs=468.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCC-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKE-FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
.+...|+.++..+.+.|++++|+.+|+.|...+ +.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998754 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
+.+|++.|++++|.++|++| ..||..+|+.++.+|.+.|++++|.++|++|.+.|+.|+..+|..++.+++..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 469999999999999999999999999999
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
.+.|+.||..|+..++.+|++.|.+++|.+++..+.+.+..+|..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864 6899
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMET-KAIGPTHVTYTVVIKGL 458 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 458 (647)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 58999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 537 (647)
++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..|+..|++.|++++|
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999998765 5789999999999999999999999999999976 556 478999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHH-HHHHHH---HHHH--------hcCCHHHHHHHHHHHHHcCCcccch
Q 006396 538 DCLLVSLQEHNISLTKV-AYTTII---KAHC--------AEGDVHKAMTFFCQMVEKGFEISIR 589 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~-~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~ 589 (647)
.++++.|.+.|+...+. +|..+. ..+. ...-++...++..+|.+.|+.|+..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999998764433 332211 0000 0012345566777788888777644
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.2e-40 Score=360.98 Aligned_cols=559 Identities=13% Similarity=0.088 Sum_probs=348.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|+++.|...++.+....+ .++..+..++..+...|++++|...|+++....+ .+...+..+...+...|++++|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHH
Confidence 44555555555555444322 3444455555555555555555555555544322 133444455555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
.++.+.+.. +........++..+.+.|++++|.++++.+... .+.+..++..+..++...|++++|.+.|+++.....
T Consensus 419 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 419 DLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred HHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 555555442 122233344445555555555665555555543 234555666666666666666666666666655421
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSIL 279 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (647)
.+...+..+...+...|++++|.+.++.+...+. .+..++..+...+.+.|+.++|...++++...+ +.+...+..+
T Consensus 497 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 573 (899)
T TIGR02917 497 -DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALAL 573 (899)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHH
Confidence 1334455555666666666666666666665432 244556666666666666666666666665543 2244455566
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (647)
+..+...|++++|..+++.+.... +.+...+..+...+...|++++|...++.+.... +.+...+..+..++...|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 666666666666666666665542 3445556666666666777777777776666543 33455566666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEM 439 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (647)
++|...++++.+..+ .+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+
T Consensus 652 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777776665432 245566666666677777777777777666553 445556666666777777777777777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 440 ETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA 519 (647)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 519 (647)
...+ |+..++..++.++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. ++++.
T Consensus 730 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 805 (899)
T TIGR02917 730 LKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAV 805 (899)
T ss_pred HhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHH
Confidence 6653 444556666677777777777777777776653 5566667777777777777777777777777642 34566
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhh
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (647)
.++.++..+...|+ .+|+.+++++.+.. +.+..++..++.++...|++++|..+++++++.+
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---------------- 867 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA---------------- 867 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------
Confidence 77777777777777 66777777777642 3345566677777777777777777777777766
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 600 LSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
|.++.++..++.++.+.|++++|.+++++|++
T Consensus 868 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 868 -----PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 66899999999999999999999999999863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-39 Score=350.48 Aligned_cols=621 Identities=14% Similarity=0.062 Sum_probs=364.6
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRL 79 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 79 (647)
++.++...|++++|...++++.+..+. +....+...+. ..|+++.|...|+.+....+ .+...+..++..+...|++
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~ 311 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNL 311 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCH
Confidence 456677788888888888887776432 22222223333 66777777777777766443 3344555566667777777
Q ss_pred hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 80 QDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
++|...|+++....+ .+...+..++..+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.++|+++
T Consensus 312 ~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 312 EQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777766432 244556666667777777777777777776654 445566666777777777777777777776
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcc
Q 006396 160 GRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVI 239 (647)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (647)
.+.. +.+...+..+...+...|++++|.+.++.+...... .......++..+.+.|++++|.++++.+.... +.+..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcH
Confidence 6642 334555666666666677777777777666654322 22334445556666666666666666665542 23455
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 006396 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLC 319 (647)
Q Consensus 240 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (647)
++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 56666666666666666666666665542 2234445555566666666666666666665542 233444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHH
Q 006396 320 EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARR 399 (647)
Q Consensus 320 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 399 (647)
..|+.++|...++.+...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655443 2344445555556666666666666666655432 2244555555666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 400 LLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 479 (647)
.++.+.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 666555432 3344455555555666666666666666555442 3334555555555566666666666666555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTI 559 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 559 (647)
+.+...+..+...+...|++++|...++.+... .|+..++..++.++...|++++|.+.++++.+.. +.+..++..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 344455555555555566666666666655552 3333445555555555666666666665555532 3344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHH--------------HHhhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSF--------------FCMMLSNGFPPDQEICEVMLIAFHQGGDLG 625 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (647)
+..|...|++++|...|+++++... .+...+.... +...... .|.++..+..++.++...|+++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKDPRALEYAEKALKL-APNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHH
Confidence 5555556666666666665555431 1111111100 0000000 2566788889999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 006396 626 SVFELAAVMIKSGLL 640 (647)
Q Consensus 626 ~A~~~~~~~~~~~~~ 640 (647)
+|.++++++++.++.
T Consensus 855 ~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 855 RALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999999998764
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-30 Score=284.53 Aligned_cols=605 Identities=14% Similarity=0.029 Sum_probs=396.1
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCccc---------------
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYT--------------- 65 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~--------------- 65 (647)
++.+...++.+.|.+.+++++...+. |+.......+. ..|+.++|.+.++++....| .++..
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchh
Confidence 56677888888888888888877532 22222222222 77888888888888877554 33332
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 66 -NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 66 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
...++..+...|++++|+..|+.+....++ +.. ............|+.++|+..++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 234455677888888888888888765433 322 11112222234588888888888888774 44566777777888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC----------------CChh---hH---------------------------------
Q 006396 144 CIAGSMEEALEFTNDMGRHGVE----------------PDAI---TY--------------------------------- 171 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~----------------~~~~---~~--------------------------------- 171 (647)
...|++++|++.++++.+.... ++.. .+
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 8888888888888877543110 0000 00
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCc-ccH--------
Q 006396 172 -SILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNV-IAY-------- 241 (647)
Q Consensus 172 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-------- 241 (647)
......+...|++++|...|++.++..+. +...+..+...+.+.|++++|...|++..+....... ..+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 01123344566677777777776665221 4556666666777777777777777776665322111 111
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 006396 242 ----SVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317 (647)
Q Consensus 242 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (647)
......+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112334556677777777777766652 2244455566666777777777777777766542 2223334444444
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCI--------QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFC 389 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (647)
+. .++.++|..+++.+...... .....+..+...+...|++++|+..|++.++..+. +...+..+...+.
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLR 506 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 42 34566666666544321100 01122344556677788888888888888876433 5566677788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHh
Q 006396 390 KNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV---------TYTVVIKGLCK 460 (647)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~ 460 (647)
..|++++|...++++.... +.+...+..+...+...+++++|...++.+......++.. .+......+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888888887643 3345555555555667888888888887765432222211 12344566778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++. .| +...+..++.+|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999988872 3566677788899999999999999999999984 45 68899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC---CHHHHHHHHH
Q 006396 540 LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP---DQEICEVMLI 616 (647)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 616 (647)
.++.+.+.. +.+..++..++.++...|++++|.+++++++...-. .+| +...+..++.
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~------------------~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS------------------QPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc------------------CCcchhhHHHHHHHHH
Confidence 999988742 335567788889999999999999999999875400 122 2356777899
Q ss_pred HHHcCCCHHHHHHHHHHHHh-CCCCCC
Q 006396 617 AFHQGGDLGSVFELAAVMIK-SGLLPD 642 (647)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~-~~~~~~ 642 (647)
.+...|++++|++.+++++. .++.|.
T Consensus 720 ~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999863 445443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-28 Score=266.34 Aligned_cols=563 Identities=12% Similarity=0.024 Sum_probs=363.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHh----------------HHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVS----------------LNA 103 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ 103 (647)
..++.+.|.+.++++....+ .++..+..++..+...|+.++|...++++.+..+. +... ...
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHH
Confidence 78899999999999998766 78999999999999999999999999999887643 3222 244
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 006396 104 IMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFS-YNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 104 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (647)
.+..+.+.|++++|.+.|+++.+.+ +|+... ...+.......|+.++|.+.++++.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 4557889999999999999999764 444321 1112222234699999999999999873 557788889999999999
Q ss_pred ChhhHHHHHHHHHhcCCC----------------CCcc---hHH----------------------------------HH
Q 006396 183 QISGAWKVIQKLLIKGSD----------------PDIV---TYT----------------------------------VL 209 (647)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~----------------~~~~---~~~----------------------------------~l 209 (647)
+.++|++.++++...... ++.. .+. ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999999988653210 0000 000 01
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhH------------
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKP-DLVTY------------ 276 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------ 276 (647)
...+...|++++|...|++..+.... +...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 22334455555555555555554321 44455555555555555555555555555432111 00111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006396 277 SILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKL 356 (647)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (647)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 111233445555555555555555542 2233344445555555555666655555555443 223334444444442 2
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006396 357 GNIGEAVQLYRQLIEKRIS--------PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN 428 (647)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 428 (647)
++.++|...++.+...... .....+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3455555555443221000 001123334455566777777777777776653 3345556666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHhcCCH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ---------ITYNTIIRSFCKCKDL 499 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 499 (647)
+++|...++.+.+.. +.+...+..+...+...++.++|+..++.+......++. ..+......+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 777777777766542 223334444444455667777777777665432111111 1122445667778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
++|..+++. .++++..+..+...+.+.|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888772 24466777889999999999999999999999863 456778999999999999999999999988
Q ss_pred HHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 580 VEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.+.. |.+..++..++.++.+.|++++|.+.++++++..+
T Consensus 664 l~~~---------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 664 PATA---------------------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred hccC---------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 8765 66788889999999999999999999999987644
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-26 Score=239.04 Aligned_cols=577 Identities=11% Similarity=-0.010 Sum_probs=366.4
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLY----NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
+...|++++|...|+++++.+ |+.......+. ..|++++|+..++++...++ .|...+..++.. +++.+
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i----~~~~k 126 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAI----PVEVK 126 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHh----ccChh
Confidence 344477777777777777764 33332333332 66777777777777766443 444444443222 67777
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSR--------YCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL-IHGLCIAGSMEEA 152 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a 152 (647)
|..+|+++....+. +..++..+... |.+.+....++. .......|++.+.... ...|.+.+++++|
T Consensus 127 A~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 127 SVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 77777777665433 33344444443 444433333333 2222112334433333 6667777777777
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 153 LEFTNDMGRHGVEPDAITYSILAKGFHL-LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
+++++++.+.+ +.+......|..+|.. .++ +.+..+++.. .+-+...+..++..+.+.|+.++|.++++.+..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 77777777664 3344445556566665 244 5555554421 223556666777777777777777777666544
Q ss_pred CCCC-cCcccHHHH------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006396 232 QGFK-LNVIAYSVL------------------------------LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILI 280 (647)
Q Consensus 232 ~~~~-~~~~~~~~l------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 280 (647)
.... |...++..+ +..+.+.++++.+.++. ++.|.... ..+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~ 347 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEE 347 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHH
Confidence 3211 222222111 22223333333222221 11222222 122
Q ss_pred HHHH--ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhc
Q 006396 281 RGLC--KQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSN--CIQDVVLYNIMIDGYVKL 356 (647)
Q Consensus 281 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (647)
+.+. ..+...++...+..|.+. .+-+......+.....+.|+.++|.+++....... ...+.....-++..|.+.
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 2221 224444555555555543 13355555566666778899999999999887631 233455566777777777
Q ss_pred CC---HHHHHHH----------------------HHHHHHC-CC-CC--CccchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006396 357 GN---IGEAVQL----------------------YRQLIEK-RI-SP--SIVTFNSLIYGFCKNGKVADARRLLDTIKLH 407 (647)
Q Consensus 357 ~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (647)
+. ..++..+ +...... +. ++ +...+..+..++.. ++.++|...+......
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 65 3333222 1111111 11 23 45566777777665 7888899988877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 408 GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
.|+......+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 466554444555567899999999999998664 4555566677788889999999999999998864 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.+.......|++++|...+++.++ ..|+...+..+..++.+.|++++|+..++++.+.. +.+...+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 444455566999999999999998 56788899999999999999999999999999853 445668889999999999
Q ss_pred CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 568 DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++++|+..++++++.. |.++.++..++.++...|++++|+..++++++..+
T Consensus 658 ~~eeAi~~l~~AL~l~---------------------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 658 DIAQSREMLERAHKGL---------------------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999987 78899999999999999999999999999998664
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=7.8e-25 Score=227.27 Aligned_cols=585 Identities=13% Similarity=0.023 Sum_probs=427.2
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH--------H
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDG--------L 73 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~ 73 (647)
|+.+|.+.|++++|+..++++.+.+ |+...+..++...++++.|...++++....| .+...+..++.. |
T Consensus 84 LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 84 LAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAIPVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHhccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhh
Confidence 7899999999999999999999985 6767677767777999999999999998665 666777777666 6
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSVVSLNAI-MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI-AGSMEE 151 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 151 (647)
.+.++..+++. .....+.|++.+.... ...|.+.|++++|+.++.++.+.+ +.+......+..+|.. .++ ++
T Consensus 161 ~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 161 AQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HH
Confidence 65544444544 2222344455545544 899999999999999999999986 5556667777778887 466 77
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CCcchHHHH---------------------
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSD-PDIVTYTVL--------------------- 209 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l--------------------- 209 (647)
+..+++.. ++.+...+..++..+.+.|+.++|.++++++...-.. |...++..+
T Consensus 235 a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 77775542 4568889999999999999999999999987654221 333333222
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 006396 210 ---------ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSS--MCKSGRIDEALGLLYEMEAVGLKPDLVTYSI 278 (647)
Q Consensus 210 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (647)
+..+.+.++++.+.++. +..|.... ..++. ....+...++...++.|-... +-+......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q 381 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQ 381 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHH
Confidence 33444455555444331 12333332 22222 223466777777777776641 225555556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC-C-CCCCcccHHHHHHHHhhcCC---HHHH----------------------HHHH
Q 006396 279 LIRGLCKQDKVHKAIQLYNEMCSK-R-ISPNSFAHGAILLGLCEKEM---ITEA----------------------RMYF 331 (647)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a----------------------~~~~ 331 (647)
+.-...+.|+.++|.++|+..... + -.++......++..|.+.+. ..++ ...+
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 666677899999999999998763 1 11222223355556655544 2222 2222
Q ss_pred HHHHHc-C-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006396 332 DSLIMS-N-CIQ--DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH 407 (647)
Q Consensus 332 ~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (647)
+.+... + .++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++.+...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 222221 1 134 67778888877776 88989999888887763 44433334455556899999999999998654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 408 GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
+|+...+..+..++.+.|++++|...++...+.. +++...+..+.......|++++|...+++..+. .|+...+.
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4555566777888899999999999999998764 333333334444455669999999999999985 46788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.+..++.+.|++++|...+++++. ..| +...++.+..++...|++++|+..++++.+.. |.+...+..++.++...
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999 455 58889999999999999999999999999853 44667899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|++++|+..++++++.. |.+..+....+....+..+++.|.+.+++....++.
T Consensus 691 Gd~~eA~~~l~~Al~l~---------------------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 691 DDMAATQHYARLVIDDI---------------------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCHHHHHHHHHHHHhcC---------------------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999987 666788889999999999999999999988776543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.5e-25 Score=214.24 Aligned_cols=575 Identities=13% Similarity=0.071 Sum_probs=432.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFC 122 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 122 (647)
+.+.|.+.|..++...+ +|..++..-+......|+|..|+.+|..++...+.--+.....+..++.+.|+.+.|+..|+
T Consensus 145 ~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred cHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 36999999999987554 67666666667777899999999999998765444333445566778889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 123 LMLKYGLHPDAFSYNILIHGLCI---AGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
++++.+ +.++.++..|...-.. ...+..+..++...-..+ +-++...+.|.+.|...|+++.++.+...+.....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 999874 3333344433332222 334667778777776653 45788899999999999999999999999887632
Q ss_pred C--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 006396 200 D--PDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYS 277 (647)
Q Consensus 200 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (647)
. .-...|-.+.++|-..|++++|...|....+.........+..+.+.+...|+++.+...|+.+.... +.+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 1 12345788899999999999999999998887433224456678999999999999999999998762 33456667
Q ss_pred HHHHHHHccC----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHH----HcCCCCcHHHHHHH
Q 006396 278 ILIRGLCKQD----KVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI----MSNCIQDVVLYNIM 349 (647)
Q Consensus 278 ~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 349 (647)
.+...|...+ ..+.|..++.+..+.. +.|...|..+...+.....+.. +..|..+. ..+..+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777664 4677777887777653 4456666666666655554444 66665543 44556788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCCc------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEK---RISPSI------VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPS-AVTYTTF 419 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 419 (647)
...+...|+++.|...|...... ...++. .+-..+..+.-..++.+.|.+.|..+... .|+ +..|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999988765 122232 12334556666778999999999999876 344 3344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCK--- 495 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 495 (647)
+......+...+|...++...... ..++..++.+...+.+...+..|.+-|+...+.- ..+|..+..+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 433344577888999999887754 4566677777778888888888888777776642 23677777788876653
Q ss_pred ---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 496 ---------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 496 ---------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.+..++|+++|.++++.. +.|...-|-++-+++..|++.+|..+|.++.+.. .....+|..++.+|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHH
Confidence 345788999999998842 3478888899999999999999999999999863 44667999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKFLI 646 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 646 (647)
|+|-.|++.|+.+.+.-+ -..+.++...|++++.+.|++.+|.+.+..++...|.-..+.+
T Consensus 694 ~qy~~AIqmYe~~lkkf~-------------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFY-------------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 999999999999987651 2457899999999999999999999999999987665554444
Q ss_pred C
Q 006396 647 N 647 (647)
Q Consensus 647 n 647 (647)
|
T Consensus 755 N 755 (1018)
T KOG2002|consen 755 N 755 (1018)
T ss_pred H
Confidence 4
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.7e-24 Score=206.51 Aligned_cols=612 Identities=12% Similarity=0.031 Sum_probs=449.6
Q ss_pred hhhHHHHHHHHHhCCCCcCHH-H--HHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 006396 12 VHDAVFVIAKMKELDLKVSIQ-T--YNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQ 87 (647)
Q Consensus 12 ~~~A~~~~~~~~~~~~~~~~~-~--~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 87 (647)
++.|.+.|..+++.. |+.. . ..+-+. +.+++..|+.+|+.++...|...+.....++.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 489999999999885 3332 1 222222 889999999999998877765666666777888999999999999999
Q ss_pred HhhcCCCCcCHHhHHHHHHHHHhc---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006396 88 ETAGKEFGPSVVSLNAIMSRYCKL---GFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGV 164 (647)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (647)
++++.+| .+..++..+...-... ..+..+.+++..+-..+ +.|+.+.+.|...|.-.|++..+..+...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 9998764 2444444444333333 45667888888887765 66888999999999999999999999998876421
Q ss_pred --CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHH
Q 006396 165 --EPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYS 242 (647)
Q Consensus 165 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (647)
..-...|-.+.++|...|++++|.+.|.+..+....--...+.-+...+...|+++.+...|+.+.+.. +.+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 122345788999999999999999999998876332223455668889999999999999999999873 33566777
Q ss_pred HHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCcccHHHH
Q 006396 243 VLLSSMCKSG----RIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC----SKRISPNSFAHGAI 314 (647)
Q Consensus 243 ~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 314 (647)
.+...|...+ ..+.|..++.+..+.- +.|...|..+...+...+-+.. +..|..+. ..+..+.+...+.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777665 5677888888877653 4477788888777766555444 76665543 45556778889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHH
Q 006396 315 LLGLCEKEMITEARMYFDSLIMS---NCIQDV------VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLI 385 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 385 (647)
.......|++..|...|+..... ...++. .+-..+..+.-..++.+.|.+.|+.++...+. -+..|..++
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhh
Confidence 99999999999999999988765 112222 23344566667788999999999999987432 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----
Q 006396 386 YGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK-AIGPTHVTYTVVIKGLCK---- 460 (647)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 460 (647)
......++..+|...+....... ..++..++.+...+.....+..|.+-|..+.+. ...+|..+.-.|...|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 44445678889999999888753 556667777888899999999998888777654 223677777666665542
Q ss_pred --------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 461 --------QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 461 --------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
.+..++|+++|.+.++.. |-+...-+.+.-.++..|++..|..+|..+.+.. .....+|..++.+|..+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 245678999999988864 6778888889999999999999999999999853 345788999999999999
Q ss_pred ChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHH--HHhhh--hCCCCCC
Q 006396 533 DLKNADCLLVSLQEHNI-SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSF--FCMML--SNGFPPD 607 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~ 607 (647)
++..|+++|+...+.-. ..+..+...|++++.+.|++.+|.+....+.......+...+...+ +.... ...-++.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t 774 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT 774 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc
Confidence 99999999999886433 3456789999999999999999999999998876333333332111 11111 1111111
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+=......+..+.|.++|..+...+..
T Consensus 775 ------~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 775 ------LEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 112223345678888888888876654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.2e-23 Score=191.73 Aligned_cols=431 Identities=15% Similarity=0.119 Sum_probs=312.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 006396 137 NILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQI 216 (647)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (647)
..|.+-..+.|++++|++.-...-..+ +.+....-.+-.++.+..+.+.....-....+.. ..-..+|..+...+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344455556677777766655444332 2233333334445555555555444333333321 11345677777777777
Q ss_pred CChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCCHHHHHHH
Q 006396 217 GNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTY-SILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~ 295 (647)
|+++.|+..++.+.+...+ ....|..+..++...|+.+.|...|.+..+. .|+.... ..+.......|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 7777777777777766432 5566777777777777777777777776654 4544432 2333444456777777777
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006396 296 YNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRIS 375 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (647)
|.+.++.. +--...|..+...+...|+...|++.|++..+.+ +.-...|-.|...|...+.++.|...|.+.....+.
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 77666542 2234556667777777777777777777777654 223556778888899999999999999888776433
Q ss_pred CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 376 PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPS-AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVV 454 (647)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (647)
....+..+...|..+|..+.|++.|++.++. .|+ ...|+.+..++-..|+..+|.+.+....... +....+.+.|
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 4566777778888999999999999998875 444 6789999999999999999999999888753 2334577888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGD 533 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 533 (647)
...+...|.+++|..+|....+.. +.-....+.|...|-++|++++|...++++++ +.|+ ...++.++..|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 999999999999999999988742 33356788999999999999999999999998 7887 7889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 534 LKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.|.+.+.+++.. .|. ...++.++..|-.+|+..+|++.|+.+++..
T Consensus 438 v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999984 455 4588999999999999999999999999865
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=3.2e-23 Score=190.67 Aligned_cols=450 Identities=16% Similarity=0.090 Sum_probs=352.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (647)
...+..-..+.|++.+|++.-..+-+.+ +.+......+-..+.+..+.+....--....+. .+.-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 5566677778899999988877776664 333333344445566666666655544444443 34456788888999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCc-ccHHHHHHHHHhcCChhHHHH
Q 006396 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNV-IAYSVLLSSMCKSGRIDEALG 259 (647)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 259 (647)
.|+++.|+..++.+++...+ ....|..+..++...|+.+.|.+.|...++.+ |+. .....+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998886332 46788888889999999999999988888763 332 234445566667888999988
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 006396 260 LLYEMEAVGLKPD-LVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSN 338 (647)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 338 (647)
.+.+..+. .|. ...|..|.-.+-..|+...|+..|++.++.+ +.-...|..+...|...+.++.|...+.......
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 88887765 333 4568888888888899999999999988752 2235678888888888999999998888887654
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006396 339 CIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT 418 (647)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (647)
+.....+..+...|...|..+.|+..|++.++..+. -+..|+.+..++...|++.+|.+.|.+..... +......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 345667778888899999999999999999987433 46789999999999999999999999998763 445678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006396 419 FMNAYCEEGNIQRLLALLQEMETKAIGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD-QITYNTIIRSFCKC 496 (647)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 496 (647)
+...|...|.++.|..+|....+- .|. ....+.|...|-++|++++|+..+++.+. +.|+ ...++.+...|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 999999999999999999988775 343 45688899999999999999999999987 4555 46889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCH
Q 006396 497 KDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDV 569 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 569 (647)
|+.+.|.+.+.+++. +.|. ...++.|...|...|+..+|++-|++.++ ++||.. .+..++.++---.+|
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 999999999999998 6676 78899999999999999999999999998 677754 666666554433333
No 17
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.93 E-value=1.4e-18 Score=161.37 Aligned_cols=585 Identities=12% Similarity=-0.013 Sum_probs=437.6
Q ss_pred cCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 9 TGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFL 86 (647)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 86 (647)
.++..+|+.+++..++.+++ |+.-...+.+- ..|.+..|+.+...--+ ..+.+.+.|..-++ ....+.|..+.
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeaiR----Lhp~d~aK~vv 338 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAIR----LHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHHh----cCChHHHHHHH
Confidence 35667888888888888753 44333344444 56677777666554333 12244444443222 22333444444
Q ss_pred HHhhcCCCCcCHHhHHH---------------------------HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 87 QETAGKEFGPSVVSLNA---------------------------IMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
..+.+..+ .++..|.. +..+.....+.+.|+-++.++.+.= +.....|
T Consensus 339 A~Avr~~P-~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLw--- 413 (913)
T KOG0495|consen 339 ANAVRFLP-TSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLW--- 413 (913)
T ss_pred HHHHHhCC-CChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHH---
Confidence 44333211 12222211 1222333445555666666666541 2223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH----hcCCCCCcchHHHHHHHHHh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLL----IKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 215 (647)
-+|.+...|+.|.++++...+. ++.+...|.+-...-..+|+.+...+++.+-+ ..|+..+...|..=...|-.
T Consensus 414 -lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 -LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3455667789999999999887 88899999998888889999999988887654 45888888888888888989
Q ss_pred cCChHHHHHHHHHHHhCCCCc--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKL--NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAI 293 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 293 (647)
.|..-.+..+....+..|+.. -..+|..-.+.|.+.+.++-|+.+|....+. .+.+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999988887542 3457888899999999999999999998875 2345667777777777789999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006396 294 QLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKR 373 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 373 (647)
.+|++++.. ++.....+......+-..|+...|+.++....... +.+...|-+.+.......+++.|..+|.+....
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 999999886 23344445556667778899999999999998876 347888888899999999999999999998764
Q ss_pred CCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 374 ISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTV 453 (647)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (647)
.|+...|..-+..-.-.++.++|.++++...+. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. ++-....|-.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 567777777777777789999999999988875 3445677888889999999999999988776654 3444566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGD 533 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 533 (647)
+...-.+.|.+-.|..++++....+ +.+...|...++.-.+.|+.+.|..++.++++. .+.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 7777788899999999999998875 778889999999999999999999999998874 45567788888877777776
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHH
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEV 613 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (647)
-..+.+.+++ ...|+++...+...+....++++|++.|+++++.+ +..-.+|..
T Consensus 803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d---------------------~d~GD~wa~ 856 (913)
T KOG0495|consen 803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD---------------------PDNGDAWAW 856 (913)
T ss_pred chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC---------------------CccchHHHH
Confidence 5444444443 35688889999999999999999999999999988 777889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 614 MLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+...+.++|.-+.-.++++++....|.
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999998876654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5e-20 Score=189.00 Aligned_cols=426 Identities=12% Similarity=-0.034 Sum_probs=260.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcC
Q 006396 173 ILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSG 252 (647)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (647)
.....+.+.|++++|++.|++.+.. .|+...|..+..+|...|++++|++.++..++.+.. +...+..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcC
Confidence 3445555566666666666665543 344455555566666666666666666666555321 3445555666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHH
Q 006396 253 RIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFD 332 (647)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 332 (647)
++++|...|......+...+. ....++..... ..+........+.. +++......+.. +............+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 666666655544432111111 11111111111 11122222222211 111122221111 111100000000011
Q ss_pred HHHHcCCCCc-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-C-CCCccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 333 SLIMSNCIQD-VVLYNIMIDG---YVKLGNIGEAVQLYRQLIEKR-I-SPSIVTFNSLIYGFCKNGKVADARRLLDTIKL 406 (647)
Q Consensus 333 ~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (647)
..... .+. ...+..+... ....+++++|.+.|+..++.+ . +.....+..+...+...|++++|...++....
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000 000 0001111111 123467888888888888754 1 22344567777778888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006396 407 HGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITY 486 (647)
Q Consensus 407 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 486 (647)
.. +.....|..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++.++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 53 3345677788888888899999999998887763 4456778888888888999999999999988864 4566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHH-------HH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVA-------YT 557 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-------~~ 557 (647)
..+..++.+.|++++|+..+++.++. .| ++..++.++.++...|++++|+..|+++.+.. |+ ... +.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHH
Confidence 78888888999999999999998873 34 57888889999999999999999999988742 32 111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.....+...|++++|..++++++..+ |.+..++..++.++.+.|++++|.+.++++.+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~---------------------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID---------------------PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22223334689999999999988876 566778889999999999999999999998765
Q ss_pred C
Q 006396 638 G 638 (647)
Q Consensus 638 ~ 638 (647)
.
T Consensus 572 ~ 572 (615)
T TIGR00990 572 A 572 (615)
T ss_pred h
Confidence 4
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2e-19 Score=184.56 Aligned_cols=429 Identities=12% Similarity=-0.009 Sum_probs=267.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 136 YNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
+......+.+.|++++|...|++..+. .|+...|..+..+|...|++++|++.++..++.... +...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 334455556666666666666666553 345555666666666666666666666666554211 23455556666666
Q ss_pred cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (647)
.|++++|+.-+..+...+...+. ....++..+.. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 66666666655544433211111 11111111111 11222222222211 112222222222 1111111111111
Q ss_pred HHHHHhCCCCCCc-ccHHHHHHH---HhhcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 296 YNEMCSKRISPNS-FAHGAILLG---LCEKEMITEARMYFDSLIMSN--CIQDVVLYNIMIDGYVKLGNIGEAVQLYRQL 369 (647)
Q Consensus 296 ~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (647)
+..... ..+.. ..+..+... ....+.+++|.+.|+.....+ .+.....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111 11111 111111111 123457778888888877654 2334566777888888899999999999998
Q ss_pred HHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 370 IEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV 449 (647)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 449 (647)
++..+. ....+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 876432 45567778888888999999999999888763 4567788888889999999999999999988764 34566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H------HHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT--S------ATY 521 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~------~~~ 521 (647)
.+..+...+.+.|++++|+..+++.++.. +.+...++.+..++...|++++|...|++.+.. .|+ . ..+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHH
Confidence 77778888889999999999999988753 556778888999999999999999999998873 332 1 112
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.....+...|++++|.++++++.+.+ +.+...+..++.++...|++++|+.+|+++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 222233445689999999999988753 3344578889999999999999999999998765
No 20
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=1.1e-17 Score=161.87 Aligned_cols=595 Identities=13% Similarity=0.044 Sum_probs=305.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|++++|..++.+++...+ .+..+|..|+.+|-+.|+.+++...+-.+....+. |...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 45777777777777776444 66667777777777777777777666665554433 45667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH----HHHHHHhcCChhhHHHHHHHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSI----LAKGFHLLSQISGAWKVIQKLL 195 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~ 195 (647)
.|.++++.. +++....-.-+..|-+.|+...|...|.++....++.|..-... +++.+...++.+.|++.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777664 45555555556666677777777777777766533222222222 2344445555666776666665
Q ss_pred hcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCcCcccHHHHHHH
Q 006396 196 IKG-SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG---------------------------FKLNVIAYSVLLSS 247 (647)
Q Consensus 196 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~ 247 (647)
..+ -..+...++.++..+.+...++.+........... ..++..+ ..++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 521 12234456666666777777776666655554411 1111111 122223
Q ss_pred HHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHH
Q 006396 248 MCKSGRIDEALGLLYEMEAVG--LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMIT 325 (647)
Q Consensus 248 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 325 (647)
+......+....+........ +.-+...|.-+..++...|++.+|+.+|..+.......+...|..+..+|...+..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 333333334444444444433 222344566667777777777777777777766544444556667777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCccchHHHHHHHHhcCCHHHH
Q 006396 326 EARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK--------RISPSIVTFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a 397 (647)
+|.+.|+.++... +.+...--.|...+.+.|+.++|.+.+..+... +..|+..........+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 7777777776654 334444555566666777777777777664421 1222222233334445555655544
Q ss_pred HHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCCCCH-
Q 006396 398 RRLLDTIKLHG----------------------LEPSAVTYTTFMNAYCEEGNIQRLLALLQ------EMETKAIGPTH- 448 (647)
Q Consensus 398 ~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~- 448 (647)
..+...|.... .+-.......++.+-.+.++......-.. .....+...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 43333332110 00111111222222222222111111111 11111111111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCCC-H
Q 006396 449 -VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TPDQI----TYNTIIRSFCKCKDLRKAFQLLNQMWLH-N--LEPT-S 518 (647)
Q Consensus 449 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~p~-~ 518 (647)
..+..++.++++.+++++|+.+...+..... .-+.. .-...+.+....+++..|...+..++.. + ..|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1234455556666666666666666554321 11111 1223334445566666666666666542 1 1221 3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-ccchhhh-----
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFE-ISIRDYT----- 592 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~----- 592 (647)
..|+..+....+.|+-.--.+++..+.......+.......+.-+...+.+..|+..+-++....-. |......
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4444334444444433333333333332211111111222223334445555555555554443321 1111111
Q ss_pred -------------------hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 593 -------------------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 593 -------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.+..+...+......++++.++++|...|-..-|..+|+++++..|
T Consensus 786 h~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 786 HLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 12222223333334678999999999999999999999999998754
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=9.7e-18 Score=162.23 Aligned_cols=616 Identities=14% Similarity=0.072 Sum_probs=376.7
Q ss_pred hHHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 4 FVYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
......|++++|..++.+++++++. +.++...+.+. ..|+.+.+...+--+-.-.+ .|...|-.+.....++|++.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3445569999999999999999753 33333334444 88999999988777766444 667899999999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHH
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSY----NILIHGLCIAGSMEEALEFTN 157 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~ 157 (647)
|+-.|.++++..+ ++......-+..|-+.|+...|..-|.++.+...+.+..-+ ..+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999764 35666677788899999999999999999987532222222 234566677788899999888
Q ss_pred HHhhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc----------------------hH----HHHH
Q 006396 158 DMGRH-GVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV----------------------TY----TVLI 210 (647)
Q Consensus 158 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------~~----~~l~ 210 (647)
..... +-.-+...++.++..+.+...++.+...+........++|.. .| ..+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 88763 234456778899999999999999998888877621111111 11 1222
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC--CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006396 211 CGYCQIGNVEEGLKLREVMLSQG--FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDK 288 (647)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (647)
-++.+....+....+.......+ +..++..|..+..++...|++.+|..+|..+......-+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444455555555555555555 3345567888999999999999999999999887555567789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH--------cCCCCcHHHHHHHHHHHHhcCCHH
Q 006396 289 VHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM--------SNCIQDVVLYNIMIDGYVKLGNIG 360 (647)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~ 360 (647)
.++|.+.|+..+... +-+...-..+...+.+.|+.++|.+.++.+.. ....|+..........+.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999988762 33445556667778889999999999888542 223445555555666677777777
Q ss_pred HHHHHHHHHHHCC----------------------CCCCccchHHHHHHHHhcCCHHHHHHHHH------HHHHCCCCCC
Q 006396 361 EAVQLYRQLIEKR----------------------ISPSIVTFNSLIYGFCKNGKVADARRLLD------TIKLHGLEPS 412 (647)
Q Consensus 361 ~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~ 412 (647)
+-+.+...|+... .+........++.+-.+.++.....+-.. .....++..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 6555544443311 00011111112222222222111111100 0001111111
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC--C-
Q 006396 413 A--VTYTTFMNAYCEEGNIQRLLALLQEMETKAI--GPTH---VTYTVVIKGLCKQWKLQEAVQLLEDMYVI-GVT--P- 481 (647)
Q Consensus 413 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~- 481 (647)
. ..+..++..+++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.|+.. +.. |
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1 2223334444455555555555444443211 1111 11122233333444555555544444432 000 0
Q ss_pred CHHHHH-----------------------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006396 482 DQITYN-----------------------------------TIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILI 525 (647)
Q Consensus 482 ~~~~~~-----------------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 525 (647)
-...|+ ........++.+..|+..+-++.. ..|+ +.+--.++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence 011122 112223345678888888877777 3454 22222222
Q ss_pred HHHhh----------cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhH
Q 006396 526 DGLCV----------NGDLKNADCLLVSLQEHNIS-LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKS 594 (647)
Q Consensus 526 ~~~~~----------~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 594 (647)
-++.. +-..-+...++.+..+.... -...++..++++|-..|-..-|..+|++++... +++..+..-
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~- 859 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKE- 859 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccC-
Confidence 22221 11234456666666653211 145688999999999999999999999999764 111111000
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 595 FFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
. ...-...+-..|.-.|..+|+...|..++++
T Consensus 860 ------d-~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 860 ------D-NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ------C-cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 0 0011145566788899999999999999876
No 22
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=4.9e-17 Score=151.35 Aligned_cols=567 Identities=11% Similarity=0.021 Sum_probs=383.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..++...|+.+++++.+.+| .++..|.+-++.--..|+++.|..+..+-.+.. +.+..+|.-.+ +....+.|..
T Consensus 263 dl~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~ 336 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKT 336 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHH
Confidence 45567899999999999777 888899999998899999999999888766543 33555665543 5566777888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
+.....+.. +.++..|...+..- .+...-.+++++.++. +|.++..|... ....+.+.|..++.+..+.
T Consensus 337 vvA~Avr~~-P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-- 405 (913)
T KOG0495|consen 337 VVANAVRFL-PTSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-- 405 (913)
T ss_pred HHHHHHHhC-CCChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh--
Confidence 888887762 33444444333322 2333344566666665 55566555543 3344555577777777654
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHhh
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYE----MEAVGLKPDLVT 275 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~ 275 (647)
-|. -.-|..++.+..-++.|.+++....+. ++.+...|..-...--..|+.+...+++++ +...|+..+..-
T Consensus 406 cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 406 CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 111 123344556666777777777777665 455667777777777777777777777654 344577777777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006396 276 YSILIRGLCKQDKVHKAIQLYNEMCSKRISPN--SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGY 353 (647)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 353 (647)
|..=...|-..|..-.+..+....+.-|+... ..++..-...|.+.+.++-++.+|...++.- +.+...|......-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHH
Confidence 77777777777777777777777766654432 3456666677777777777777777776643 34556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006396 354 VKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLL 433 (647)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 433 (647)
-..|..+....++++.+..-+ -....|.....-+-..|+...|..++..+.+.. +.+...|..-+.......++++|.
T Consensus 561 k~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHH
Confidence 667777777777877776532 244445555556666788888888877777653 345666777777777777788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006396 434 ALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN 513 (647)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 513 (647)
.+|...... .|+...|.--+....-.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|...|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence 888777664 466666666666556667778888888777764 3444556777777777778888887777766652
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccch-hhh
Q 006396 514 LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIR-DYT 592 (647)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 592 (647)
.+..+..|..|...-.+.|.+-.|..++++..-++ +.+...|...++.-.+.|..+.|..++.++++.- |+.. .|.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 23346677777777777777788888888777654 5566677777777788888888877777777642 2222 122
Q ss_pred hHH------------HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 593 KSF------------FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 593 ~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..+ .+-++ .+..|++....++..+....+++.|+++|.++.+.++
T Consensus 792 EaI~le~~~~rkTks~DALk--kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALK--KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHhccCcccchHHHHHHH--hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 111 11111 1356788899999999999999999999999998764
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=2.2e-20 Score=182.41 Aligned_cols=299 Identities=13% Similarity=0.091 Sum_probs=202.0
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---ccchHHHHHHHHhcCCH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS---IVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 394 (647)
+...|++++|...|..+...+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555443 23445666667777777777777777777765422111 13456667777777788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 006396 395 ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTH----VTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
++|..+|+.+.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888777777642 445667777777788888888888888877765422211 2344566667778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 550 (647)
++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 88887653 34456677777888888888888888888876321222456777888888888888888888888774 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc---CCCHHHH
Q 006396 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ---GGDLGSV 627 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A 627 (647)
|+...+..++..+.+.|++++|..+++++++.. |+...+..+...+.. .|+.++|
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----------------------P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRH----------------------PSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------cCHHHHHHHHHHhhhccCCccchhH
Confidence 566666777888888888888888888887764 555566655555443 4578888
Q ss_pred HHHHHHHHhCCCCCCC
Q 006396 628 FELAAVMIKSGLLPDK 643 (647)
Q Consensus 628 ~~~~~~~~~~~~~~~~ 643 (647)
..+++++++.++.|+.
T Consensus 338 ~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888888865555443
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.9e-20 Score=182.86 Aligned_cols=308 Identities=14% Similarity=0.042 Sum_probs=227.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD---AFSYNILIH 141 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 141 (647)
.....+..+...|++++|+..|+++.+.++ .+..++..++..+...|++++|..+++.+...+..++ ...+..++.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 344445667788888888888888887653 3556788888888888888888888888877532111 245677788
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcC
Q 006396 142 GLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDI----VTYTVLICGYCQIG 217 (647)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 217 (647)
.|.+.|++++|..+|+++.+. .+.+..++..++.++...|++++|.+.++.+.+.+..+.. ..+..+...+...|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 888888888888888888765 3456778888888888888888888888888776433221 13455667778888
Q ss_pred ChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006396 218 NVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYN 297 (647)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (647)
++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998888887642 24556777888888889999999999888875322224567788888888899999999888
Q ss_pred HHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 006396 298 EMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK---LGNIGEAVQLYRQLIEKRI 374 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~ 374 (647)
++.+. .|+...+..+...+.+.|++++|...++.+.+. .|+...++.++..+.. .|+.+++..+++++.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 88775 455556667777788888888888888877765 3666677777766654 4578888888888887766
Q ss_pred CCCcc
Q 006396 375 SPSIV 379 (647)
Q Consensus 375 ~~~~~ 379 (647)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 66655
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.6e-19 Score=184.29 Aligned_cols=336 Identities=10% Similarity=0.040 Sum_probs=269.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (647)
+..-...++..+.+.|++++|..+++........ +...+..++.+....|++++|+..++++.... +.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3445666778888999999999999999887433 34556666677788999999999999998863 445567777888
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHH
Q 006396 317 GLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVAD 396 (647)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 396 (647)
.+...|++++|...++...... +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 8899999999999999998864 456778888899999999999999999988776443 23333333 34778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 006396 397 ARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQE----AVQLLE 472 (647)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~ 472 (647)
|...++.+......++......+...+...|++++|...++...... +.+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999998776433444455556778889999999999999988764 4456778888899999999885 799999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
++.+.. +.+...+..+...+...|++++|...++++... .| +...+..+..++...|++++|...++++.+. .|
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 998864 556778889999999999999999999999984 45 4777888899999999999999999999885 35
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 552 TKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 552 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.. .+..++.++...|++++|+..|+++++..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 44456778899999999999999998875
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=7.5e-19 Score=179.33 Aligned_cols=324 Identities=13% Similarity=0.081 Sum_probs=214.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|+++.|+.+++.++...+ .++.++..++.+....|++++|...|+++....+. +...+..+...+.+.|++++|..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 67777778777777776444 56666777777777778888888888877765432 45567777777777788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
.++++.+.. +.+...+..++..+...|++++|...++.+....+ .+...+..+ ..+...|++++|...++.+.....
T Consensus 132 ~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 877777653 44566677777777777888877777777765432 223333333 336667777777777777766533
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHhh
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE----ALGLLYEMEAVGLKPDLVT 275 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~ 275 (647)
.++......+...+...|++++|.+.++.....+.. +...+..+...+...|++++ |...|++..... +.+...
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a 286 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRI 286 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHH
Confidence 333334444556677777777777777777766432 55566677777777777764 677777777653 224556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006396 276 YSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK 355 (647)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (647)
+..+...+...|++++|+..+++..... +.+......+...+...|++++|...++.+..... .+...+..+..++..
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~al~~ 364 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 7777777777777777777777777652 22344455566667777777777777777765531 122333334556677
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006396 356 LGNIGEAVQLYRQLIEK 372 (647)
Q Consensus 356 ~~~~~~a~~~~~~~~~~ 372 (647)
.|+.++|...|++..+.
T Consensus 365 ~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 365 AGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 77777777777777665
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.9e-17 Score=169.01 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=114.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCccchHHHHHHH
Q 006396 314 ILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI-----SPSIVTFNSLIYGF 388 (647)
Q Consensus 314 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 388 (647)
.+.++...++..++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+..... +++......|..++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3445566667777777777777666544555666677777777777777777777655421 11222235566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 006396 389 CKNGKVADARRLLDTIKLHGLEPS-AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVT-YTVVIKGLCKQWKLQE 466 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 466 (647)
..++++++|..+++.+.+. .|. ...+ |.. .....||-.. +..++..+...|+..+
T Consensus 378 ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred HhcccHHHHHHHHHHHHhc--CCcEEecc----------CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6677777777777766652 220 0000 000 0001122222 2233444555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 467 AVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 467 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
|++.++.+.... |-|......+...+...|.+.+|+..++.+.. +.| +..+....+.++...|++++|..+.+.+.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666665543 45555666666666666666666666655444 234 34555555566666666666666666666
Q ss_pred H
Q 006396 546 E 546 (647)
Q Consensus 546 ~ 546 (647)
+
T Consensus 512 ~ 512 (822)
T PRK14574 512 S 512 (822)
T ss_pred h
Confidence 5
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=4.9e-18 Score=177.41 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=108.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHH
Q 006396 165 EPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVL 244 (647)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (647)
+.+.....-.+.+....|+.++|++++.+..... ..+...+..+...+...|++++|.++|+...+... .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3455555556667777788888887777776521 22334567777777778888888888887776632 245556677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCH
Q 006396 245 LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMI 324 (647)
Q Consensus 245 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 324 (647)
+.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 777777888888888887777652 22344 6677777777788888888887777652 22333344455555566666
Q ss_pred HHHHHHHHHHH
Q 006396 325 TEARMYFDSLI 335 (647)
Q Consensus 325 ~~a~~~~~~~~ 335 (647)
+.|...++.+.
T Consensus 167 e~Al~~l~~~~ 177 (765)
T PRK10049 167 APALGAIDDAN 177 (765)
T ss_pred HHHHHHHHhCC
Confidence 66666665544
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.88 E-value=1e-17 Score=175.00 Aligned_cols=441 Identities=13% Similarity=0.014 Sum_probs=229.6
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.++....-.+.+....|+.++|+.+|.++.... +.+...+..++.++...|++++|..+++++++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444445555666677777777777777776422 2234456777777777777777777777777653 44455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (647)
..+...|++++|...++++.+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 6777777777777777777665 233444 666666777777777777777777665322 3334445556666666666
Q ss_pred HHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH---HHHHHHHH
Q 006396 221 EGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV---HKAIQLYN 297 (647)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~ 297 (647)
.|++.++.... .|+ +..-+ ....+....+-. +.......+++ ++|++.++
T Consensus 168 ~Al~~l~~~~~---~p~---~~~~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPA---EKRDL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHH---HHHHH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHH
Confidence 67666655443 121 00000 000000000000 00000111222 55666666
Q ss_pred HHHhC-CCCCCccc-HH----HHHHHHhhcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 298 EMCSK-RISPNSFA-HG----AILLGLCEKEMITEARMYFDSLIMSNCI-QDVVLYNIMIDGYVKLGNIGEAVQLYRQLI 370 (647)
Q Consensus 298 ~~~~~-~~~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 370 (647)
.+.+. ...|+... +. ..+..+...+++++|+..|+.+...+.+ |+. ....+..+|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66543 11122111 00 0012223445555555555555444311 111 11113445555566666666665555
Q ss_pred HCCCCC---CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 006396 371 EKRISP---SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT 447 (647)
Q Consensus 371 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (647)
+..+.. .......+..++...+++++|..+++.+.... ++....+. .....|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~-----------------------~~~~~p~ 355 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG-----------------------SPTSIPN 355 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC-----------------------CCCCCCC
Confidence 432111 01123333444455555555555555554431 11100000 0000122
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 006396 448 H---VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNI 523 (647)
Q Consensus 448 ~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 523 (647)
. ..+..+...+...|+.++|++.++++.... |.+...+..+...+...|++++|++.+++++. ..|+ ...+..
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~ 432 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVE 432 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHH
Confidence 1 234455556666777777777777776643 45556666677777777777777777777776 3453 555566
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
++..+...|++++|..+++++++. .|+......+-+.+
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 666667777777777777777763 45544444444444
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=4e-17 Score=166.72 Aligned_cols=431 Identities=12% Similarity=0.055 Sum_probs=281.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-chHH--HHHH
Q 006396 137 NILIHGLCIAGSMEEALEFTNDMGRHGVEPDA--ITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDI-VTYT--VLIC 211 (647)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~--~l~~ 211 (647)
..-+....+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.. .|+. ..+. .+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 333444568999999999999998853 332 344 88888889999999999999987 2322 2233 3356
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 006396 212 GYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHK 291 (647)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (647)
.+...|++++|+++++.+.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 788889999999999999998644 5677778888999999999999999999876 5666666555555555666666
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH----HHHHHHhcC----------
Q 006396 292 AIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNI----MIDGYVKLG---------- 357 (647)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~---------- 357 (647)
|++.++++.+.. +.+...+..+...+.+.|-...|.++...-... -+...... .+.-..+.+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 999999999873 445667788888888899888888776653321 11111111 111112111
Q ss_pred --CHHHHHHHHHHHHHC-CCCCCcc-ch----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 358 --NIGEAVQLYRQLIEK-RISPSIV-TF----NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 358 --~~~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
-.+.|+.-++.+... +..|... .+ .-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 123344444454432 1112211 11 123445566777777777777777766555556667777777777777
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHH
Q 006396 430 QRLLALLQEMETKA-----IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-----------TPDQ---ITYNTII 490 (647)
Q Consensus 430 ~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~ 490 (647)
++|..+++.+.... ..++......|.-++...+++++|..+++.+.+... .|++ .....++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 77777777775532 122333345667777777777777777777776311 0111 1233445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
..+...|++.+|++.++++... -+-|......+...+...|.+.+|++.++.+.... +-+..+....+.++...|++.
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 5566677777777777777663 13367777777777777777777777776655531 223446666677777777777
Q ss_pred HHHHHHHHHHHcC
Q 006396 571 KAMTFFCQMVEKG 583 (647)
Q Consensus 571 ~A~~~~~~~~~~~ 583 (647)
+|..+.+.+.+..
T Consensus 502 ~A~~~~~~l~~~~ 514 (822)
T PRK14574 502 QMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhhC
Confidence 7777777777654
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.3e-16 Score=139.64 Aligned_cols=440 Identities=12% Similarity=0.099 Sum_probs=264.8
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
+...|...+..-..++++..|..+|++++... ..+...|...+.+-.++.....|..+++..... .|.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 44556666666666777777777777777655 556666777777777777777777777777664 2322334444555
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
+-...|++..|.++|++.... .|+..+|.+.+..-.+-+.++.|..+++...-. .|++..|....+.-.+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 555567777777777777664 677777777777777777777777777777654 4667777777777777777777
Q ss_pred HHHHHHHHHHC-CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006396 257 ALGLLYEMEAV-GL-KPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSL 334 (647)
Q Consensus 257 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 334 (647)
+..+|+...+. |- ..+...+.+....-.++..++.|.-+|+-.+.+ -|...+
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~ra------------------------ 279 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRA------------------------ 279 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccH------------------------
Confidence 77777766543 10 001122333333333455566666666665554 222111
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 335 IMSNCIQDVVLYNIMIDGYVKLGNIGEAVQ--------LYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKL 406 (647)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (647)
...|..+...--+.|+.....+ -++..+..+ +.|-.+|-..+..-...|+.+...++|+..+.
T Consensus 280 --------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 280 --------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred --------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 1111111111122222211111 123333332 23555566666666666777777777777665
Q ss_pred CCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHH
Q 006396 407 HGLEPSA--VTYTTFM--------NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGL----CKQWKLQEAVQLLE 472 (647)
Q Consensus 407 ~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~ 472 (647)
. ++|-. ..|...| -.-....+.+.+.++|+...+. ++....||.-+--.| .++.+...|.+++.
T Consensus 351 n-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 351 N-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred c-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4 34321 1111111 1112456777777788777763 344445555444333 35667777888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
.++ |..|-..++...|..-.+.++++.+..++++.++. .| +..+|...+..=...|+.+.|..+|+-+++...-.
T Consensus 429 ~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 429 NAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred HHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 766 55677777777777777888888888888888773 34 56777777777777788888888888777642111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 552 -TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 552 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
....|-..+..-...|.+++|..+|+++++..
T Consensus 505 mpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 505 MPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 12256666666677788888888888887765
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.4e-15 Score=132.24 Aligned_cols=470 Identities=11% Similarity=0.029 Sum_probs=308.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD-AFSYNILI 140 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 140 (647)
+...|-..++--..+++++.|+.+|++++... ..+...|...+.+-.+......|..+++++... -|. ...|...+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 44456666666667777777777777777654 335667777777777777777777777777765 233 22455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (647)
.+--..|+...|.++|+...+ ..|+...|++.+..-.+-+..+.|..++++.+-. .|+..+|...+..-.++|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 555556777777777777766 4677777777777777777777777777777654 567777777777777777777
Q ss_pred HHHHHHHHHHhC-C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHH-
Q 006396 221 EGLKLREVMLSQ-G-FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD--LVTYSILIRGLCKQDKVHKAIQL- 295 (647)
Q Consensus 221 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~- 295 (647)
.+..+|+..... | -..+...+.+....-.++..++.|.-+|+-..+. ++.+ ...|......--+-|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 777777766553 1 0112234445555555566677777777776665 1112 22333333333334443332222
Q ss_pred -------HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHH--------HHHHHhcCCH
Q 006396 296 -------YNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV-LYNIM--------IDGYVKLGNI 359 (647)
Q Consensus 296 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--------~~~~~~~~~~ 359 (647)
|+.+++.+ +.|-.++...+......|+.+...++|+..+..-++.+.. .|... +-.-....+.
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33333332 4455666666776677778888888888777653222211 12211 1222346788
Q ss_pred HHHHHHHHHHHHCCCCCCccchHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGF----CKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 435 (647)
+.+.++|+..++. ++....||..+--.| .++.++..|.+++...+ |..|...+|...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8899999888874 444666666554444 45788899999888776 4478888899888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
++...+-+ +.+..+|......-...|+.+.|..+|+-++... .......|.+.|..-...|.+++|..+++++++.
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 99988875 5567788887777778899999999999888643 2223456666677667889999999999999883
Q ss_pred CCCHHHHHHHHHHHh-----hcC-----------ChhhHHHHHHHHHH
Q 006396 515 EPTSATYNILIDGLC-----VNG-----------DLKNADCLLVSLQE 546 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 546 (647)
.+...+|......-. +.+ ....|..+|+++..
T Consensus 537 t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 537 TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 344456655544333 223 45678888888764
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=3.8e-15 Score=131.97 Aligned_cols=389 Identities=17% Similarity=0.174 Sum_probs=263.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHH
Q 006396 164 VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSV 243 (647)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (647)
.+.+..++.++|.++++--..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|.+..+.||..++|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 456788999999999999999999999999988878889999999987654332 2788999999999999999999
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH-HHHHHHHHHh----CCCCCC----ccc
Q 006396 244 LLSSMCKSGRIDE----ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHK-AIQLYNEMCS----KRISPN----SFA 310 (647)
Q Consensus 244 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~~----~~~ 310 (647)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.+.|- ...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999999888754 4555555543 333333 333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHH
Q 006396 311 HGAILLGLCEKEMITEARMYFDSLIMSN----CIQD---VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNS 383 (647)
Q Consensus 311 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (647)
+...+..|.+..+.+.|.++..-+.... +.++ ..-|..+....++....+.....|+.|+-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 5566677778888888888877665432 1222 22355677778888889999999999998877888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT---HVTYTVVIKGLCK 460 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 460 (647)
++++....+.++-..++|.++...|...+......++..+++. ...|+ ..-+.....-|+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~----------------k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD----------------KLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC----------------CCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998876544443333333333322 22222 1122222222211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC---HHHHHHHHHHHhhcCChhh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT---SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~ 536 (647)
.-.+.....-.++.+. .......+.++..+.+.|..++|.+++..+.+.+ --|. ......+++.-...+++..
T Consensus 503 -d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 503 -DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred -HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111122223344443 3344556666666778888888888887775532 2222 3333355566666777888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|...++-|...+.+.-...-..+...|.-.....+|+.-
T Consensus 580 A~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~ 618 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSN 618 (625)
T ss_pred HHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhh
Confidence 888888777655433333344444444444444444433
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=7.7e-15 Score=130.05 Aligned_cols=236 Identities=14% Similarity=0.213 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICG 212 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (647)
..++..+|.++++--+.++|.+++++......+.+..++|.+|.+-.-..+ .+++.+|......||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 334444444444444444444444444443334444444444443322211 3444444444444444444444444
Q ss_pred HHhcCChHH----HHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh-HHHHHHHHHHHC----CCC----CCHhhHHHH
Q 006396 213 YCQIGNVEE----GLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID-EALGLLYEMEAV----GLK----PDLVTYSIL 279 (647)
Q Consensus 213 ~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~----~~~----~~~~~~~~l 279 (647)
..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++.. .+..++.++... .++ .|...+...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 444444332 2234444444444444444444444444443331 222333322211 111 122233444
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCCCC---cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSK----RISPN---SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDG 352 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (647)
+..|....+.+-|.++..-+... -+.|+ ..-+..+....+.....+.-..+|+.+.-.-..|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 44444444444444443333211 01111 122333444444445555555555555544444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006396 353 YVKLGNIGEAVQLYRQLIEK 372 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~ 372 (647)
..-.+.++-..+++.+++..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HhhcCcchhHHHHHHHHHHh
Confidence 55555555555555555543
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.8e-15 Score=135.08 Aligned_cols=481 Identities=12% Similarity=0.038 Sum_probs=290.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHH
Q 006396 99 VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSY-NILIHGLCIAGSMEEALEFTNDMGRHGVEPD----AITYSI 173 (647)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 173 (647)
.++..+..-|.....+.+|+..|+-+.+....|+.... ..+...+.+.+.+.+|++.++-.+..=+..+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34555666666666677777777777766656665433 2344556667777777777766654311111 122233
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcc--------cHHHHH
Q 006396 174 LAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVI--------AYSVLL 245 (647)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~ 245 (647)
+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.++......+|.. .-..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 333455667777777777666554 4555444444445555667777777776666542222211 111222
Q ss_pred HHHHhcCChhH--------HHHH---HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 006396 246 SSMCKSGRIDE--------ALGL---LYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAI 314 (647)
Q Consensus 246 ~~~~~~g~~~~--------a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (647)
.--.+...+.. |++. --++..--+.|+-.. -.+-+++.++.-... +.-...-..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~--~la~dlei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHA--ELAIDLEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhh--hhhhhhhhhH
Confidence 21111111110 1111 111111001111000 001111111111000 0000000112
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcC
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV-K-LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNG 392 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 392 (647)
...+.++|+++.|.++++-+.+.+...-...-+.+-..+. + -.++..|..+-+..+... ..+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 3346788999999999888877653333333333333322 2 335667766666555431 112222222223344679
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
++++|...|.+.......- ...+..+.-.+-..|+.++|++.|-.+... +..+......+...|....++..|++++.
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999988653222 222223344567789999999999876542 12356677778888888999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT 552 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 552 (647)
+.... ++.|+.++..|...|-+.|+-..|.+++-.--+. ++-+..+...|..-|....-+++|+.+|+++.- +.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 87765 6778999999999999999999999987665553 455889999999999999999999999999876 7899
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 553 KVAYTTII-KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 553 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
..-|..++ +++.+.|++++|.++|+..-++ +|.+.++...|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk---------------------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK---------------------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---------------------CccchHHHHHHHHHhccccc
Confidence 99997766 4556689999999999999876 48999999999999998885
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=7.9e-16 Score=137.25 Aligned_cols=441 Identities=14% Similarity=0.100 Sum_probs=286.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCc----ccHHH
Q 006396 169 ITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTY-TVLICGYCQIGNVEEGLKLREVMLSQGFKLNV----IAYSV 243 (647)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 243 (647)
.+...|..-|..+....+|+..++-+++...-|+.... ..+...+.+..++.+|++.++..+..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 33444556666677777888888888777666665433 23456677788888888888877765322222 23444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------cccHHHHH
Q 006396 244 LLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN--------SFAHGAIL 315 (647)
Q Consensus 244 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~ 315 (647)
+.-.+.+.|+++.|+..|+...+. .|+..+-..++-++..-|+.++..+.|.+|..-...|+ ......++
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 455667788888888888887765 67776666666667777888888888888765321111 11122222
Q ss_pred HHHhhcC--------CHHHHHHHHHHH---HHcCCCCcH-----HHHH----------------HHHHHHHhcCCHHHHH
Q 006396 316 LGLCEKE--------MITEARMYFDSL---IMSNCIQDV-----VLYN----------------IMIDGYVKLGNIGEAV 363 (647)
Q Consensus 316 ~~~~~~~--------~~~~a~~~~~~~---~~~~~~~~~-----~~~~----------------~l~~~~~~~~~~~~a~ 363 (647)
.--.+.. +-..|++..-.. +..-+.|+- ++.. .-..-+.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2221111 111222222111 111111110 0000 0122467889999999
Q ss_pred HHHHHHHHCCCCCCccchHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006396 364 QLYRQLIEKRISPSIVTFNSLI-YGFCK-NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMET 441 (647)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (647)
++++-+..+.-......-+.+- --|.+ .+++..|..+-+...... .-+......-...-...|++++|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9998887653322222222221 22222 345667766666555322 23333333333334467899999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006396 442 KAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATY 521 (647)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 521 (647)
....-....|+ +.-.+...|+.++|+..|-++... +..+..++..+.+.|....+...|++++...... ++.|+.+.
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 53222222233 233456789999999999887753 3557778888999999999999999999888763 44479999
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhh
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLS 601 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (647)
..|.+.|-+.|+-.+|.+.+-.--.. ++-+..+..++..-|....-+++|+.+|+++.-
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-------------------- 654 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-------------------- 654 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--------------------
Confidence 99999999999999999887665553 566888999999999999999999999999865
Q ss_pred CCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHhCC
Q 006396 602 NGFPPDQEICEVML-IAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 602 ~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+.|+..-|..++ .++.+.|++..|.++++.....-
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 468888888666 66667899999999999988753
No 37
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.79 E-value=5.1e-12 Score=118.32 Aligned_cols=580 Identities=11% Similarity=0.051 Sum_probs=376.9
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHH-------hcCC----hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 13 HDAVFVIAKMKELDLKVSIQTYNSLLY-------NLRH----TDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
.+-..+|+++++.- .-+-..|...|. ...- ++..-..|++....-. .-+..|......+.++|+...
T Consensus 43 k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH-kmpRIwl~Ylq~l~~Q~~iT~ 120 (835)
T KOG2047|consen 43 KQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH-KMPRIWLDYLQFLIKQGLITR 120 (835)
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcchHHH
Confidence 34567888888863 345566666664 1222 3444445554432111 345678888999999999999
Q ss_pred HHHHHHHhhcCC-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006396 82 AILFLQETAGKE-FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMG 160 (647)
Q Consensus 82 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (647)
-+..|++++..- +.....+|...+......|-++-+..++++-++. ++..-+-.|..++..+++++|.+.+...+
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 999999998753 2233458999999999999999999999999976 34446777888899999999999988875
Q ss_pred hC------CCCCChhhHHHHHHHHHhcCChh---hHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 161 RH------GVEPDAITYSILAKGFHLLSQIS---GAWKVIQKLLIKGSDPD--IVTYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 161 ~~------~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
.. ..+.+...|..+-...+++.+.- ...++++.+... -+| ...|++|...|.+.|.+++|..+|++.
T Consensus 197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 43 12345566777766666554432 344555555543 334 346899999999999999999999998
Q ss_pred HhCCCCcCcccHHHHHHHHHhcCC----------------------hhHHHHHHHHHHHCC-----------CCCCHhhH
Q 006396 230 LSQGFKLNVIAYSVLLSSMCKSGR----------------------IDEALGLLYEMEAVG-----------LKPDLVTY 276 (647)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~ 276 (647)
... ..+..-|..+.+.|..... ++-...-|+.+.... -+.++..|
T Consensus 275 i~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 275 IQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 876 3355556666666554221 122233333333221 01123333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCc---HHHHH
Q 006396 277 SILIRGLCKQDKVHKAIQLYNEMCSKRISPNS------FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQD---VVLYN 347 (647)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 347 (647)
..-+. +..|+..+-...|.++.+. +.|.. ..+..+...|-..|+++.|..+|+...+.+.+.- ..+|.
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 33222 3456777888888888765 33332 3456777888899999999999999887653322 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRISP-----------------SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLE 410 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 410 (647)
.-...-.+..+++.|+++.++.....-.| +...|+..+..--..|-++....+|+.+....+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 55566667888999999988876542111 1223444555555677888888888888875432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV-TYTVVIKGLCK---QWKLQEAVQLLEDMYVIGVTPDQITY 486 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 486 (647)
. +.........+-...-++++.+++++-...-..|+.. .|+..+.-+.+ ...++.|..+|++.++ |.+|...-+
T Consensus 510 T-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 510 T-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred C-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 2 2222222223344556788888887765554345543 45555444432 3478999999999998 556544322
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH---HHHHH
Q 006396 487 NTII--RSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV---AYTTI 559 (647)
Q Consensus 487 ~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l 559 (647)
.-|+ ..--+.|-...|..+++++... +++. ..+|+.++.--...=-......+|+++++. -|+.. .....
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHH
Confidence 2222 2223568889999999998764 4443 567887776555554566678899999985 45544 33455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
+..-.+.|..+.|..++.-..+.- +...+.+.|...-..-.++|+-+.-++
T Consensus 665 AdlEtklGEidRARaIya~~sq~~-------------------dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQIC-------------------DPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcC-------------------CCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 566678899999999999887754 223457788888888888888443333
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.8e-14 Score=127.14 Aligned_cols=327 Identities=10% Similarity=0.006 Sum_probs=235.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH--HHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAH--GAI 314 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 314 (647)
|...+......+.+.|..+.|+..|...... -+..|...+....-..+.+.+.. .... .+.+.... ..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~----l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSI----LVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHH----HHhc-CcccchHHHHHHH
Confidence 4444444555566677778888888777643 23344444433322233332222 2111 12111111 123
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCccchHHHHHHHHhcC
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRIS--PSIVTFNSLIYGFCKNG 392 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 392 (647)
..++....+.+++..-.+.+...|.+.+...-+....+.....+++.|+.+|+++....+- -|..+|+.++..-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 4455556677788888888888777767766677777777888999999999999887321 14556665554432211
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
. ..++.+-...--+-.+.|...+.+.|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|.+.++
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 1122111111013445677788888999999999999999999875 4456679999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
.+++.. |.|-..|-.|.++|.-.+...-|+-+|+++.. ++| |+..|.+|+.+|.+.++.++|++.|.++...| ..
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 999875 77889999999999999999999999999998 566 79999999999999999999999999999875 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
+...+..+++.|.+.++.++|...|++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 678999999999999999999999999886
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=2.8e-17 Score=151.30 Aligned_cols=261 Identities=14% Similarity=0.131 Sum_probs=117.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKR-ISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEE 426 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 426 (647)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++.+.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677888999999999997655543 34455566666777778899999999999998764 3355667777776 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 427 GNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 505 (647)
+++++|..++....+. .++...+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998877655 3566677788888999999999999999987633 356778888999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 506 LNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGF 584 (647)
Q Consensus 506 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 584 (647)
++++++ ..| |......++..+...|+.+++.+++....+.. +.|+..+..++.++...|++++|+.+++++.+..
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 999999 456 58888999999999999999999999988753 5667788999999999999999999999999987
Q ss_pred cccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 585 EISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
|.|+.....++.++...|+.++|.++..++.+
T Consensus 245 --------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 --------------------PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --------------------TT-HHHHHHHHHHHT-----------------
T ss_pred --------------------cccccccccccccccccccccccccccccccc
Confidence 88999999999999999999999999888764
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.7e-12 Score=114.65 Aligned_cols=365 Identities=12% Similarity=0.029 Sum_probs=264.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh--HH
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVT--YS 277 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~ 277 (647)
..|...+-.....+.+.|..+.|...|...... -+..|.+.+....-..+.+ +....... ...|... =-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e----~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE----ILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH----HHHHHHhc-CcccchHHHHH
Confidence 335544444455667888999999998888765 3444544444333233332 22222222 1222111 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHh
Q 006396 278 ILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNC--IQDVVLYNIMIDGYVK 355 (647)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 355 (647)
.+..++-...+.+++..-.+.....|++.+...-+..........++++|+.+|+.+.+..+ ..|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 33455556667888888888888888776666666666777788899999999999998752 236677777653 33
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006396 356 LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435 (647)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 435 (647)
..+.. +..+..-...--+--+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+.+-|...++...|++.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 33222 2222222111112345677888899999999999999999999864 44567788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006396 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 515 (647)
++...+-. +-|-..|-.+.++|.-.+.+.=|+-.|+++.+.. |.|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999875 5688899999999999999999999999999874 7789999999999999999999999999999865 4
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEH----NI-SL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...+..|++.|.+.++..+|...|++-++. |. .| ...+...|..-+.+.+++++|-.+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 46788999999999999999999999887752 22 22 122344466777888888888877666654
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-12 Score=120.37 Aligned_cols=492 Identities=12% Similarity=0.059 Sum_probs=309.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
-+..+.+-+..+.++.-|.-+-+++...+ .++..-.-++..+.-.|+++.|..+...-.-. ..+..........+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 34445555666667777777777776654 34444445667777777777777766554322 345556666666777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 006396 145 IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLK 224 (647)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (647)
+..++++|..++.... +..++..+-.--. ...-..+.+. ... ++......+-.-...|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHH
Confidence 7777777777766331 1111111110000 0000011111 000 001111112222334555667777777
Q ss_pred HHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006396 225 LREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK----PDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300 (647)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (647)
.|.+.... |+..+..+...-.. ..-.+.+.++.+...... .+......+.....-...-+.....-++..
T Consensus 163 ~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 163 KYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 77777665 44444433222111 111222222222221100 011111111111100000000000000001
Q ss_pred hCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 006396 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVT 380 (647)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 380 (647)
-.+...+......-...+....++.++.++.+.+.... ++....+..-|.++...|+..+-..+-.++++.- |..+.+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 11223344555556666778899999999999998876 4566677777778999999999888888998874 447888
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 381 FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (647)
|-.+.--|...|+.++|++.|.+..... +.=...|..+...|...+..++|...+....+.- +-....+-.+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 9999999999999999999999887643 2234678889999999999999999998877641 1122223344455778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---C-CCHHHHHHHHHHHhhcCCh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH--NL---E-PTSATYNILIDGLCVNGDL 534 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~-p~~~~~~~l~~~~~~~g~~ 534 (647)
.++.+.|.+.|..+.... |.|+..++.+.-.....+.+.+|..+|+..+.. .. . .-..+++.|+.+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999998753 667888888888888889999999999988731 11 1 1356789999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++|+..+++.+... +.+..++.+++-.|...|+++.|++.|.+++...
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999863 6678899999999999999999999999999865
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=1.9e-13 Score=131.76 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=192.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchH--HHHHHHHhcCCHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCIQDVVL-YNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFN--SLIYGFCKNGKVADA 397 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 397 (647)
.|+++.|++.+....... +++.. +.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 455555554444433321 11222 222334446778888888888887764 33433222 235567778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 006396 398 RRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV-------TYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~ 470 (647)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887764 4456777777888888888888888888888765432221 222223333334445555666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 550 (647)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+ .+|++.... +.+....++.+++.+..++..+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6665443 355777888888888899999999999988887 355654332 233345588888999998888752 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
-|+..+..++..|.+.|++++|.+.|+++++.. |+...+..++.++.+.|+.++|.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----------------------P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----------------------PDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456677888899999999999999999998864 7788888899999999999999999
Q ss_pred HHHHHhC
Q 006396 631 AAVMIKS 637 (647)
Q Consensus 631 ~~~~~~~ 637 (647)
+++.+..
T Consensus 384 ~~~~l~~ 390 (398)
T PRK10747 384 RRDGLML 390 (398)
T ss_pred HHHHHhh
Confidence 8887653
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=1.6e-13 Score=133.14 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=186.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc--chHHHHHHHHhcCCHHHH
Q 006396 320 EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV--TFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 320 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 397 (647)
..|+++.|++.+....+.. +.+...+-....+..+.|+.+.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455555555555444432 1122233344556667788888888887776543 3332 223346667778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 006396 398 RRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYT-VVIK---GLCKQWKLQEAVQLLED 473 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~a~~~~~~ 473 (647)
...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877764 445667777778888888888888888888777543 322221 1111 11222333333445555
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 474 MYVIG---VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSAT---YNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 474 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+.+.. .+.+...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54432 1237778888888889999999999999998884 344321 112222233457788888888888875
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 006396 548 NISLTK--VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLG 625 (647)
Q Consensus 548 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (647)
.+.|+ ....++++.+.+.|++++|.++|+++.... ..|+.+.+.+++..+.+.|+.+
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~--------------------~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK--------------------EQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--------------------cCCCHHHHHHHHHHHHHcCCHH
Confidence 24445 566788999999999999999999543322 3578888889999999999999
Q ss_pred HHHHHHHHHHh
Q 006396 626 SVFELAAVMIK 636 (647)
Q Consensus 626 ~A~~~~~~~~~ 636 (647)
+|.+++++.+.
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-12 Score=120.16 Aligned_cols=497 Identities=11% Similarity=0.015 Sum_probs=324.4
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
+..-+..+++-+..+.++..|.-+-+++...+. |+..-..+..++.-.|++++|..+...-.- ...|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHH
Confidence 344566677777778888888888888877653 344444567777778888888877765533 2457777777788
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
++.+..++++|..++..... .-++..+..-= + ...-+.+.+. +.... ......+-.-...|....++++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~-~-~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKD-A-ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchh-h-hceeccCccc----ccccc--cchhceeeeeeehhhhhccHHH
Confidence 88888888888888774311 11111111000 0 0000011111 01111 1111222223345666778889
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCcccHHHHHHHHhhcCCHHHHHHHHH
Q 006396 257 ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRIS----PNSFAHGAILLGLCEKEMITEARMYFD 332 (647)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 332 (647)
|...|++.... |...+..+...-.. ..-.+.+.++.+...... .+......+.........-+.....-+
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 99999887754 44444433222111 111121222222211100 011111111111100000000000000
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006396 333 SLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPS 412 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 412 (647)
...-.+...+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 00011123355666667778888999999999999999874 456667777777888899988887777777765 3667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRS 492 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (647)
+.+|-++...|.-.|...+|.+.|....... +.=...|-.....+.-.|..++|+..+..+.+. ++-...-+.-+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 8899999999999999999999999877643 223457888899999999999999999888774 22222223345566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHh
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH--NISL----TKVAYTTIIKAHCA 565 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~ 565 (647)
|.+.++++.|.++|..+.. +-| |+...+.++-.....+.+.+|..+|+..+.. .+.+ -..+++.++.+|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 8889999999999999988 555 6888999988888899999999999998831 0111 23468899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCC
Q 006396 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDK 643 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 643 (647)
.+.+++|+..+++++... |.+..++..++-+|...|+++.|.+.+.+++... ||.
T Consensus 468 l~~~~eAI~~~q~aL~l~---------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n 522 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLS---------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDN 522 (611)
T ss_pred HhhHHHHHHHHHHHHHcC---------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--Ccc
Confidence 999999999999999987 8899999999999999999999999999998854 554
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.7e-14 Score=135.66 Aligned_cols=290 Identities=9% Similarity=0.033 Sum_probs=233.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCccchHHHHHHHHhcCCHHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI--SPSIVTFNSLIYGFCKNGKVADAR 398 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 398 (647)
.-...+|...|..+... +.....+...+..+|...+++++|.++|+.+.+..+ --+.++|+..+..+-+ +-+.
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34567888888884443 344557888899999999999999999999887532 1256677777765532 2223
Q ss_pred HHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 399 RLLD-TIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYV 476 (647)
Q Consensus 399 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (647)
.++. .+... -+..+.+|-++..+|.-+++++.|++.|++..+. .| ...+|+.+..=+.....++.|...|+..+.
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3333 23333 2667899999999999999999999999999876 34 677888888888888999999999999875
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006396 477 IGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVA 555 (647)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 555 (647)
.. +.+-..|-.+...|.+.++++.|+-.|+++++ +.| +......++..+-+.|+.++|+++++++...+ +.|+..
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 42 33445666788899999999999999999998 556 67888888999999999999999999999854 446667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
-..-+..+...+++++|+..++++.+.- |.+..++..+++.|.+.|+.+.|+.-+--+.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v---------------------P~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV---------------------PQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC---------------------cchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 7777888999999999999999999876 7788999999999999999999999999999
Q ss_pred hCCCCCCC
Q 006396 636 KSGLLPDK 643 (647)
Q Consensus 636 ~~~~~~~~ 643 (647)
+.+|++..
T Consensus 619 ~ldpkg~~ 626 (638)
T KOG1126|consen 619 DLDPKGAQ 626 (638)
T ss_pred cCCCccch
Confidence 98887765
No 46
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=7.9e-12 Score=108.49 Aligned_cols=484 Identities=12% Similarity=0.059 Sum_probs=255.0
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
.-+....++..|+.+++-....+-.-...+-.-++.++.+.|++++|...+..+.... .++...+..|.-.+.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3455566777777777665543322222223334455566777777777776666543 455556666666666667777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006396 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (647)
+|..+.... +.++-.-..++....+.++-++-..+.+.+... ..--.+|.......-.+.+|++++..++
T Consensus 109 eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665544 223444445555555666655555555544321 1223344444445555666677766666
Q ss_pred hCCCCcCcccHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc
Q 006396 231 SQGFKLNVIAYSV-LLSSMCKSGRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS 308 (647)
Q Consensus 231 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (647)
..+ |+-...|. +.-+|.+..-++-+.++++-.... -||+. ..+..+....+.=+-..|++-.+.+...+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 542 23333333 233445555556666666555443 23322 22222222222211122222222222221000
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCccchHH
Q 006396 309 FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK-----LGNIGEAVQLYRQLIEKRISPSIVTFNS 383 (647)
Q Consensus 309 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (647)
| ..+.-.++ -.+-+.|++++--+.+. -| ..-..
T Consensus 253 -------------------------------------~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlN 290 (557)
T KOG3785|consen 253 -------------------------------------Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLN 290 (557)
T ss_pred -------------------------------------c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hhhhh
Confidence 0 00111111 12334555555544443 11 12223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN-------IQRLLALLQEMETKAIGPTHV-TYTVVI 455 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 455 (647)
++-.|.+.+++.+|..+.+++.. ..|-......++. ...|+ ..-|...|+..-+.+..-|.. --.++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 44446667777777666665542 1233333333222 22222 233444444433332221111 122344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
..+.-..++++++..+..+..--...|...+ .+..+++..|++.+|+++|-.+....++.+..-...|.++|...+.++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 4444456778888888777765334444444 578888999999999999988876444444444566778999999999
Q ss_pred hHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh-------hHHHHhhhhCCCCCC
Q 006396 536 NADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------KSFFCMMLSNGFPPD 607 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 607 (647)
.|+.++-++. .+.+.. ..-.++.-|.+.+.+--|.+.|+.+...+ |+++.|. .+++.....+..|.-
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCccchHHHHHHHHHcCCCCCCc
Confidence 9888776553 223333 34456688899999988888888887765 4444443 345555544444445
Q ss_pred HHHHHHHHHHHHcCCC
Q 006396 608 QEICEVMLIAFHQGGD 623 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~ 623 (647)
......++..+...++
T Consensus 521 ~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 521 ISQMREVVHLLRMKPN 536 (557)
T ss_pred hhHHHHHHHHHHhCCC
Confidence 6667777777777665
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.9e-13 Score=131.77 Aligned_cols=295 Identities=12% Similarity=0.009 Sum_probs=205.3
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH
Q 006396 31 IQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIV-IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY 108 (647)
Q Consensus 31 ~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (647)
..+...++. ..|+++.|.+.+....... +++..+..+ .....+.|+++.|...|.++.+..+.+...........+
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 345555666 5688888888777765422 223333333 445578888888888888887754332222323446678
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhc
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA-------ITYSILAKGFHLL 181 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 181 (647)
...|+++.|...++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888775 556777888888888888888888888888876543222 1334444444455
Q ss_pred CChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
.+.+...++++.+.+. .+.++.....+...+...|+.++|.++++...+. .++.. ..++.+....++.+++.+..
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHH
Confidence 5566666666666443 2335667778888888888888888888888774 33332 22334444568888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 006396 262 YEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM 336 (647)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 336 (647)
+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++.+...
T Consensus 318 e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8887763 235556778888888888888888888888875 67888878888888888888888888887654
No 48
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=3.6e-10 Score=106.56 Aligned_cols=593 Identities=12% Similarity=0.047 Sum_probs=367.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCC-CcCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDL-KVSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAI 83 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 83 (647)
+..++++...+...+.+++..+ .++..+...+.- ..|+.++|....+..+..++ .+...|+.++-.+....++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHH
Confidence 4567888888888899887632 356555555555 78999999999998887555 78889999999999999999999
Q ss_pred HHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006396 84 LFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG 163 (647)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (647)
..|+.++..+. .|..+|.-+.-.-++.++++.....-.+.++.. +..-..|..++.++.-.|++..|..++++..+..
T Consensus 96 Kcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998653 367789888888889999998888877777763 3445578888888889999999999999998764
Q ss_pred -CCCChhhHHHHH------HHHHhcCChhhHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006396 164 -VEPDAITYSILA------KGFHLLSQISGAWKVIQKLLIKGSDPDIVT-YTVLICGYCQIGNVEEGLKLREVMLSQGFK 235 (647)
Q Consensus 164 -~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (647)
..|+...+.... ......|.++.|++.+...... ..|... -..-...+.+.+++++|..++..++.. .
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 246666655433 3345677888888777665432 112222 234456788999999999999999988 3
Q ss_pred cCcccHHHHH-HHHHhcCChhHHH-HHHHHHHHCCCCCCHhhHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHH
Q 006396 236 LNVIAYSVLL-SSMCKSGRIDEAL-GLLYEMEAVGLKPDLVTYSIL-IRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHG 312 (647)
Q Consensus 236 ~~~~~~~~l~-~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (647)
||...|...+ .++.+..+.-++. .+|....+. .|....-..+ +.......-.+...+++..+.+.|+++--.
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~--- 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK--- 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---
Confidence 5555555544 4443333333344 666665543 2211111111 111111222344455666677777655332
Q ss_pred HHHHHHhhcCCHHHHHHHHHHH----HHcC----------CCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006396 313 AILLGLCEKEMITEARMYFDSL----IMSN----------CIQDVVLY--NIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376 (647)
Q Consensus 313 ~l~~~~~~~~~~~~a~~~~~~~----~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (647)
.+...|-.....+-.+++.-.+ ...+ -+|....| .-++..+-..|+++.|...++..+++ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 2222222211111111111111 1111 14444444 44677788899999999999998875 23
Q ss_pred C-ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------
Q 006396 377 S-IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV------ 449 (647)
Q Consensus 377 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------ 449 (647)
+ +..|..-.+.+...|+++.|...++...+.+ .+|...-.--.....+..+.++|.++.....+.|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 2 3445555688888999999999999988765 55555444666777788999999999988887763 222
Q ss_pred --HHHHH--HHHHHhcCCHHHHHHHHHHHHHcC--C-------------CCCHHHHHHHHHHHHhcCC-------HHHHH
Q 006396 450 --TYTVV--IKGLCKQWKLQEAVQLLEDMYVIG--V-------------TPDQITYNTIIRSFCKCKD-------LRKAF 503 (647)
Q Consensus 450 --~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~--~-------------~~~~~~~~~l~~~~~~~~~-------~~~A~ 503 (647)
.|-.+ ..+|.+.|++..|++-|..+.+.- . ..+..+|..++...-...+ ...|+
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai 559 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAI 559 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 22222 345677778877777666554320 0 1233344444443322221 23456
Q ss_pred HHHHHHHhCC-CC-CCHHHHHHHH----HHHhhc-CChhhHHHHHHHHH---------HcCCC--CCHHHHHHHHHHHHh
Q 006396 504 QLLNQMWLHN-LE-PTSATYNILI----DGLCVN-GDLKNADCLLVSLQ---------EHNIS--LTKVAYTTIIKAHCA 565 (647)
Q Consensus 504 ~~~~~~~~~~-~~-p~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~~---------~~~~~--~~~~~~~~l~~~~~~ 565 (647)
+++-.+.+.. .. +.......+- ....+. .+-.+|...-+.+. +.|.+ +|.. .++..+.+
T Consensus 560 ~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~ 636 (700)
T KOG1156|consen 560 EIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLK 636 (700)
T ss_pred HHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhh
Confidence 6666665521 00 1111111111 111111 11122222221111 12222 3333 33444444
Q ss_pred cCC-HHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 566 EGD-VHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 566 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..+ .++|..++..+...+ +.+..++..-...|.+.|++.-|.+.++++.....
T Consensus 637 t~~Pl~ea~kf~~~l~~~~---------------------~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~ 690 (700)
T KOG1156|consen 637 TEDPLEEARKFLPNLQHKG---------------------KEKGETYILSFELYYRKGKFLLALACLNNAEGIHG 690 (700)
T ss_pred cCChHHHHHHHHHHHHHhc---------------------ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 443 466888888888776 78889999999999999999999999888876544
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-12 Score=116.14 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=177.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006396 352 GYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQR 431 (647)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (647)
.+.-.|+.-.|..-|+..+...+.+ ...|-.+...|...++..+....|+.....+ +.++.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3445688889999999998875543 3337777888999999999999999988765 5567778888888888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 432 LLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
|..-|+...... +.+...|..+.-+..+.++++++...|++.++. +|.-+..|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999988763 334556666666677889999999999999886 677788999999999999999999999999987
Q ss_pred CCCCCC---------HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 512 HNLEPT---------SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 512 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
++|+ +.+.-.++..- -.+++..|..+++++.+. .|. ...+.+++..-.+.|+.++|+++|++...
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3443 22223333222 348999999999999984 454 45899999999999999999999999876
Q ss_pred cC
Q 006396 582 KG 583 (647)
Q Consensus 582 ~~ 583 (647)
..
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 54
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.1e-13 Score=132.23 Aligned_cols=301 Identities=11% Similarity=-0.030 Sum_probs=203.0
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHH
Q 006396 31 IQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYC 109 (647)
Q Consensus 31 ~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (647)
..+...++. ..|+++.|.+.+.+.....+ .+...+...+.+....|++++|...+.++.+..+.+...........+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 445566666 78889999888888766432 3334455667778888999999999888876543333334455577888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHH---HHhcCChh
Q 006396 110 KLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYS-ILAKG---FHLLSQIS 185 (647)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~ 185 (647)
..|+++.|...++.+.+.. |.++.++..+...+...|++++|.++++.+.+.+.. +...+. ....+ ....+..+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999998888875 556777888888888899999999888888887543 333231 11111 12222333
Q ss_pred hHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCccc-HHHHHHHHHhcCChhHHHHHH
Q 006396 186 GAWKVIQKLLIKGS---DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA-YSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 186 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~ 261 (647)
+..+.+..+....+ ..+...+..++..+...|+.++|.++++...+......... ...........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 33344444444321 12666777888888888999999999888888643211111 111122223456778888888
Q ss_pred HHHHHCCCCCC-H--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 006396 262 YEMEAVGLKPD-L--VTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM 336 (647)
Q Consensus 262 ~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 336 (647)
+...+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877765 333 3 455678888888899999999888544433467877788888888888999999888887644
No 51
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.67 E-value=3.5e-11 Score=115.57 Aligned_cols=435 Identities=14% Similarity=0.059 Sum_probs=251.6
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CcccHH
Q 006396 164 VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL-NVIAYS 242 (647)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 242 (647)
+..+...|..+.-+....|+++.+.+.|++....-+. ....|..+...+...|.-..|..+++........| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556677777777777777887777777776654222 34567777777777777777777777766553223 223333
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCC
Q 006396 243 VLLSSMC-KSGRIDEALGLLYEMEAV--GL--KPDLVTYSILIRGLCKQ-----------DKVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 243 ~l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 306 (647)
.....|. +.+..++++..-.+..+. +. ......|..+.-+|... ....++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333333 345556655555554441 10 11222333333333221 11345666666666553 33
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY 386 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (647)
|+.+..-+..-|...++++.|.+...+....+...+...|..+.-.+...+++..|+.+.+...+.- ..|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 4444444445566666777777777666666555566666666666666777777777666655431 111111111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 006396 387 GFCKNGKVADARRLLDTIKLH-GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK--AIGPTHVTYTVVIKGLCKQWK 463 (647)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 463 (647)
.-..-++.+++......+... .-.+.. ...++-....+....+.-. .......++..+..-....+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~- 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL- 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh-
Confidence 222345555555554444321 000000 0011111111111111100 00111122222221111111
Q ss_pred HHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCh
Q 006396 464 LQEAVQLLEDMYVIGVT--PD------QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDL 534 (647)
Q Consensus 464 ~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 534 (647)
+.+..-.. +.+..+. |+ ...|......+.+.++.++|...+.+... +.| ....|...+..+...|.+
T Consensus 625 -~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 -KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred -hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhh
Confidence 10000000 1111111 22 23456677788899999999999999877 344 578888888999999999
Q ss_pred hhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 535 KNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMT--FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
++|.+.|..+... .|+ ......++.++.+.|+..-|.. ++..+++.+ |.+.++|
T Consensus 701 ~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d---------------------p~n~eaW 757 (799)
T KOG4162|consen 701 EEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD---------------------PLNHEAW 757 (799)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC---------------------CCCHHHH
Confidence 9999999999984 555 5588999999999999988888 999999998 8899999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 612 EVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..++..+.+.|+.++|.+-|.-+.+...
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999987543
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=5.3e-16 Score=142.88 Aligned_cols=253 Identities=15% Similarity=0.091 Sum_probs=73.0
Q ss_pred hcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 006396 40 NLRHTDIMWDLYDDIKVSE-TPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAK 118 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 118 (647)
..|+++.|++++++..... ++.++..|..++......|++++|+..++++...+.. ++..+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 5556666666664433222 3345555555555555666666666666666554322 33344444444 4556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 119 GLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG-VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.+++...+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 665555443 3344445555555556666666666666554321 2344555555556666666666666666666554
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 006396 198 GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYS 277 (647)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (647)
.+. |......++..+...|+.+++.++++...+.. +.++..+..+..++...|+.++|...|++..... +.|.....
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 221 34445555556666666666555555554442 3344555556666666666666666666655532 22455555
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 006396 278 ILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
.+..++...|+.++|.++..++
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHT---------------
T ss_pred cccccccccccccccccccccc
Confidence 5556666666666666655544
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=6.6e-13 Score=120.11 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=179.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (647)
+.-.|+.-.+..-|+..+.....++ ..|--+..+|....+.++-+..|+...+.+ +.++.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 3457888999999999988653332 337777788999999999999999998875 45667788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
..=|++.+... +.+...|..+..+..+.+.++++...|++..+. ++..+.+|+.....+..++++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998754 445667777777777899999999999999885 5556999999999999999999999999999973
Q ss_pred CCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 548 NISLT-------KVAY--TTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 548 ~~~~~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
.|. ...+ -.++. +--.+++..|..+++++++.+ |.-..++..|+...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D---------------------pkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD---------------------PKCEQAYETLAQFE 547 (606)
T ss_pred --ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC---------------------chHHHHHHHHHHHH
Confidence 443 2222 12222 223389999999999999987 67788999999999
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 006396 619 HQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~ 636 (647)
.+.|+.++|+++|++...
T Consensus 548 lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998764
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=6.7e-10 Score=104.54 Aligned_cols=533 Identities=11% Similarity=0.099 Sum_probs=281.2
Q ss_pred HHHhcCChhhHHHHHHHHHhC-CCCcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh
Q 006396 5 VYSRTGMVHDAVFVIAKMKEL-DLKVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQ 80 (647)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 80 (647)
....+|.+..-+..|++++.. -+......|...+. ..+-++-+..++++.+. .+|..-...+..+...++.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchH
Confidence 345677777777777777754 22233344444444 66667777777777766 55555666667777777777
Q ss_pred HHHHHHHHhhcCCC------CcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 006396 81 DAILFLQETAGKEF------GPSVVSLNAIMSRYCKLGF---AEVAKGLFCLMLKYGLHPD--AFSYNILIHGLCIAGSM 149 (647)
Q Consensus 81 ~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 149 (647)
+|.+.+...+.... +.+...|..+-....+.-+ --....+++.++.. .+| ...|.+|..-|.+.|.+
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 77777776654211 1123344444444443322 22334444444443 333 33677777777777777
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------------------hhhHHHHHHHHHhcCC--------
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ----------------------ISGAWKVIQKLLIKGS-------- 199 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~-------- 199 (647)
++|..+|++.... -.++.-+..+..+|+...+ ++-.+.-|+.+.....
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 7777777776553 2344445555555543211 1111122222221110
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 200 ---DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN------VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 200 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
.-++..|..-+. +..|+..+-...+.+..+. +.|. ...|..+.+.|-..|+++.|+.+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 001111111111 1223334444444444332 1111 113444455555555555555555555443221
Q ss_pred CC---HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 006396 271 PD---LVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYN 347 (647)
Q Consensus 271 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (647)
.- ..+|......-.+..+++.|+++++....- |.... ..+...+...++. ...+...|.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r----------lhrSlkiWs 481 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR----------LHRSLKIWS 481 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH----------HHHhHHHHH
Confidence 11 122333333333444455555544444321 11111 0111111111110 011345666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH-
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA-VTYTTFMNAYCE- 425 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~- 425 (647)
..++.--..|-++....+|+++++..+. ++.........+-...-++++.++|++-+..--.|+. ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 6677777788899999999999887654 3332222333334455678888888876654334443 456666665554
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCH
Q 006396 426 --EGNIQRLLALLQEMETKAIGPTHVTYTVVIKG--LCKQWKLQEAVQLLEDMYVIGVTPDQ--ITYNTIIRSFCKCKDL 499 (647)
Q Consensus 426 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 499 (647)
...++.|..+|++..+ +.+|...-+-.++-+ --+.|-...|+.+++++... +++.. ..|+..|.--...=-+
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCC
Confidence 3468999999999988 666554433222222 23457788899999987653 34332 3456555433333334
Q ss_pred HHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSAT---YNILIDGLCVNGDLKNADCLLVSLQEHN-ISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
.....+|+++++ .-|+... .....+.=.+.|..+.|..++.-..+.. ...+...|.+.-..-.+.|+-+-
T Consensus 639 ~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 639 PRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred cccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 566778888887 3555333 3334455567899999999988777642 22355678888777888898443
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=6.7e-13 Score=113.68 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=114.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCH------HhHHHHHHHHHhcCChhh
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSV------VSLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~ 116 (647)
.+|.|.++|-++...++ ...++...+++.|...|..++|+.+.+...+. ||. .....+..-|...|-++.
T Consensus 50 Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 50 QPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred CcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45666666666665332 33445555666666666666666666665542 221 134455555666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHH
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA----ITYSILAKGFHLLSQISGAWKVIQ 192 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 192 (647)
|..+|..+...+ .--..+...|+..|-...+|++|+++.+++.+.+.++.. ..|..|...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 666666665543 223344555666666666666666666666554333221 113334444444555555555555
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006396 193 KLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267 (647)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 267 (647)
+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+..+.+.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55544221 233333444555555555555555555555543333344555555555555555555555555443
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=6.8e-12 Score=111.18 Aligned_cols=287 Identities=11% Similarity=0.021 Sum_probs=183.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRL 400 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (647)
.|++.+|++......+.+ ......|..-.++--+.|+.+.+-.++.+..+....++....-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 344444444444433332 1123334444555666777777777777776653333444444555566667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 401 LDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV-------TYTVVIKGLCKQWKLQEAVQLLED 473 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~ 473 (647)
+.++.+.+ +-+........++|.+.|++..+..++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77776654 4455666677777777777777777777777766543332 444444444444444444445554
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH
Q 006396 474 MYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 553 (647)
.... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++.+.-++..++..+. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4432 3555666667777788888888888888888876555551 1122344566777767777666664 34455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
..+.+++..|.+.+.|.+|..+|+.+++.. |+.+.|..++.++.+.|+..+|.+..++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~----------------------~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR----------------------PSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC----------------------CChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 677888888888888888888888777754 8888888888888888888888888887
Q ss_pred HHhC
Q 006396 634 MIKS 637 (647)
Q Consensus 634 ~~~~ 637 (647)
.+-.
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 7643
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=3.4e-12 Score=109.41 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=221.6
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD---AFSYNILIHGLCIAGSM 149 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 149 (647)
++-..+.++|.+.|-.+.+..+. +..+...+...|.++|..+.|+.+.+.+..+.-.+. ..+...|..-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 45577999999999999985432 456788899999999999999999999987531111 22445677788899999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHHHHHH
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV----TYTVLICGYCQIGNVEEGLKL 225 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~ 225 (647)
+.|..+|..+...+ .--......|+.+|-...++++|+++-+++.+.+.++... .|..+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999997753 3355678889999999999999999999998876554432 466677777778899999999
Q ss_pred HHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006396 226 REVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRIS 305 (647)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (647)
+.+..+.+.+ .+.+-..+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 9999887543 556666778889999999999999999998755545567788889999999999999999998876 3
Q ss_pred CCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 006396 306 PNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKL---GNIGEAVQLYRQLIEK 372 (647)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 372 (647)
+.......+........-.+.|..++.+-... .|+...+..++...... |...+....+++|+..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44444444444444555566666555554443 47888888888776543 3456666677777654
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=4.3e-12 Score=112.46 Aligned_cols=298 Identities=12% Similarity=-0.006 Sum_probs=210.7
Q ss_pred CHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH
Q 006396 30 SIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY 108 (647)
Q Consensus 30 ~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (647)
...+-..++. ..|++..|+++..+..+++. ...-.|..-+.+.-+.|+.+.+=.++.++.+....++........+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4455566666 77888888888888766554 333455555666778888888888888887754455666777777888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhc
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA-------ITYSILAKGFHLL 181 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 181 (647)
..+|+++.|..-.+++.+.+ +.++........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888888888776 566777888888888888888888888888887654433 3466666666666
Q ss_pred CChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
+..+.-...++..... ..-++..-..++.-+.+.|+.++|.++.++..+.+..|+ -...-.+.+.++...-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHH
Confidence 6666655566655443 233555666777778888888888888888888766554 22223345566666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 006396 262 YEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 337 (647)
++..+.. +.+...+.++...|.+.+.|.+|...|+...+. .|+..++..+...+.+.|+..+|.+..+.....
T Consensus 318 e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6655431 224466778888888888888888888877664 678888888888888888888888887776643
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.5e-13 Score=127.02 Aligned_cols=288 Identities=15% Similarity=0.100 Sum_probs=221.5
Q ss_pred ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL--HPDAFSYNILIHGLCIAGSMEEALEF 155 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (647)
+-.+|+..|...... ...+.++...++++|...+++++|+.+|+.+.+... ..+..+|...+-.+-+. + +.--+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--v-~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--V-ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--H-HHHHH
Confidence 567899999985544 333557888999999999999999999999987631 12456777766544221 1 11122
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006396 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP-DIVTYTVLICGYCQIGNVEEGLKLREVMLSQGF 234 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (647)
-+.+... .+..+.+|.++..+|.-+++.+.|++.|++.++. +| ...+|+.+..-+....++|.|...|+..+..+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2333332 3567899999999999999999999999999876 44 567888888889999999999999999987643
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 006396 235 KLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAI 314 (647)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (647)
. +-.+|..+...|.+.++++.|+-.|++..+.+.. +......+...+.+.|+.++|+++++++.... +.++..-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 4456667888999999999999999999887533 66667777888889999999999999998763 3455555556
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (647)
...+...+++++|+..++++...- +.+..++..+...|.+.|+.+.|+.-|..+.+..+++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 677778889999999999888753 4566778888889999999999999998888765544
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.5e-13 Score=117.67 Aligned_cols=239 Identities=11% Similarity=0.009 Sum_probs=207.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHh
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVT-YTVVIKGLCK 460 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 460 (647)
..+..+|.+.|.+.+|.+.++..... .|-+.||..+-..|.+..++..|+.++.+-.+. .|-.+| ...+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56789999999999999999988876 677889999999999999999999999998876 455555 4556778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
.++.++|.++++...+.. +.+......+...|.-.++.+-|++++.+++..|+ .++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999864 66777788888888889999999999999999874 5789999999999999999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 541 LVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 541 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
|++++..-..|+ ..+|..+.......||+..|.+.|+-++..+ +.+.+.++.|+-.-
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---------------------~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---------------------AQHGEALNNLAVLA 439 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---------------------cchHHHHHhHHHHH
Confidence 999997544454 4489999999999999999999999999887 77789999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCCCCCC
Q 006396 619 HQGGDLGSVFELAAVMIKSGLLPDKFLIN 647 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~n 647 (647)
.+.|+.++|+.++..+....|..-.++.|
T Consensus 440 ~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred hhcCchHHHHHHHHHhhhhCccccccccc
Confidence 99999999999999998876655455544
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.3e-11 Score=105.63 Aligned_cols=456 Identities=13% Similarity=0.085 Sum_probs=250.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 006396 105 MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQI 184 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (647)
+.-+....++..|+.+++-....+-.....+-..+...+...|++++|...+..+.+. ..++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4445556667777777666554331111122223334455667777777777666554 345556666666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
.+|..+-.+..+ ++.....++....+.++-++-..+.+.+... ...-..+.......-.+.+|+++++.+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 666665554321 2333344444445555555544444443321 112223333333334555666666655
Q ss_pred HHCCCCCCHhhHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 006396 265 EAVGLKPDLVTYSI-LIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDV 343 (647)
Q Consensus 265 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 343 (647)
... .|+-...+. +.-+|.+..-++-+.++++-..+. -|| ++
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd----------------------------------St 219 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD----------------------------------ST 219 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC----------------------------------cH
Confidence 543 222222222 222334444455555554444433 122 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006396 344 VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK-----NGKVADARRLLDTIKLHGLEPSAVTYTT 418 (647)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (647)
...|..+....+.-+-..|.+-.+.+.+.+.. .|- .+.-.++ -++-+.|.+++-.+... -|. .-..
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlN 290 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EYP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLN 290 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhh
Confidence 23333332223322233333334444332111 111 1222222 23457788877766643 333 2344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H----HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006396 419 FMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG-L----CKQWKLQEAVQLLEDMYVIGVTPD-QITYNTIIRS 492 (647)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 492 (647)
++-.|.+.++.++|..+.+++... .|-......+..+ + ......+-|.+.|+-.-+.+...| ..--.++..+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 566688999999999988876532 2333332222221 1 112234456666655544443333 2334456666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (647)
+.-..++++.+.+++.+...-...|...+ .+.++++..|++.+|+++|-++....++.+..-...++++|.+.|.++.|
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66778899999999988874333344444 57889999999999999999887644433333446777899999999998
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCC
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDK 643 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 643 (647)
.+++-++-..+ ........++..|++.|.+=-|.+.+..+...+|.|+.
T Consensus 448 W~~~lk~~t~~----------------------e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 448 WDMMLKTNTPS----------------------ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHhcCCch----------------------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 77665543211 22445567779999999999999999999888888753
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.61 E-value=2.8e-10 Score=107.34 Aligned_cols=471 Identities=14% Similarity=0.110 Sum_probs=260.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 136 YNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
|..++..| ..+++...+++.+.+.+. .+-...+.....-.+...|+.++|...........+. +.++|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344433 345666666666666553 3333444444444445556666666666665554332 45566666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (647)
..++++|.+.|+.....+.. |...+..+.-.-++.++++..........+.. +.....|...+.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777666665422 55556655555566666666665555555431 22344566666666666777777777
Q ss_pred HHHHHhCCC-CCCcccHHHHH------HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 296 YNEMCSKRI-SPNSFAHGAIL------LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQ 368 (647)
Q Consensus 296 ~~~~~~~~~-~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 368 (647)
++...+... .|+...+.... ....+.|..+.|.+.+......- ......-..-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 766665431 23333332221 22344555566655554433211 11122223345567778888888888888
Q ss_pred HHHCCCCCCccchHHHHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006396 369 LIEKRISPSIVTFNSLIY-GFCKNGKVADAR-RLLDTIKLHGLEPSAVTYTTF-MNAYCEEGNIQRLLALLQEMETKAIG 445 (647)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (647)
++.. .||...|...+. ++.+..+..++. .+|....+. .|.......+ ++......-.+..-.++..+.+.|++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 8876 345555554443 332333333333 556555543 1111111111 11111122234445556666677754
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYV----IG----------VTPDQITY--NTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
+--. .+...|-.-...+-..++...+.. .| -+|....| ..++..|-+.|+++.|..+++.+
T Consensus 321 ~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 SVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred chhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4322 232222221111111111111111 10 14555444 45667788999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccc
Q 006396 510 WLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISI 588 (647)
Q Consensus 510 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 588 (647)
+. ..|+ +..|..-.+.+...|++++|..++.+..+.+ .+|...-..-+.-..++.+.++|..+.....+.|. +.
T Consensus 398 Id--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~ 472 (700)
T KOG1156|consen 398 ID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GA 472 (700)
T ss_pred hc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--ch
Confidence 88 4566 6777777889999999999999999999865 45555555777888899999999999999988773 22
Q ss_pred hhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 589 RDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
......+.|++ ....-+.+|.+.|++.+|++=+..+
T Consensus 473 ~~~L~~mqcmW----------f~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 473 VNNLAEMQCMW----------FQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhhhHH----------HhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 22222222222 1123357777888887776554443
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.60 E-value=4.3e-10 Score=108.30 Aligned_cols=539 Identities=16% Similarity=0.091 Sum_probs=288.0
Q ss_pred HhcCChh--hHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH---HHHhcCChhH
Q 006396 7 SRTGMVH--DAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVID---GLCQQSRLQD 81 (647)
Q Consensus 7 ~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~ 81 (647)
.-+|..+ .+...|+.++.++ ...+..+-.+.++...+..-+......+.+.++..+-.+-. .|...|+.++
T Consensus 208 ~t~~~~~~~s~~~~l~~vl~~~----~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee 283 (799)
T KOG4162|consen 208 ATQGSKDTESGALKLQEVLSRA----VELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEE 283 (799)
T ss_pred hhccCcchHHHHHHHHHHHHHH----HHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHH
Confidence 3344444 5666666666652 22233333366777777777777776665555544433322 3445555555
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
+ .+...+.+. .-|...+...++.. .-.+.++....+.-++.+|..+.-+....|+++.+.+.|++...
T Consensus 284 ~-~Lllli~es-~i~Re~~~d~ilsl----------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~ 351 (799)
T KOG4162|consen 284 V-ILLLLIEES-LIPRENIEDAILSL----------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP 351 (799)
T ss_pred H-HHHHHHHhh-ccccccHHHHHHHH----------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5 222222111 11111111111100 00111222222233556666666666677777777777777654
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcch-HHHHHHHHH-hcCChHHHHHHHHHHHhC--C--CC
Q 006396 162 HGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVT-YTVLICGYC-QIGNVEEGLKLREVMLSQ--G--FK 235 (647)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~--~~ 235 (647)
. .-.....|..+...+...|....|..+++........|+..+ +......|. +.+.+++++.+..++... + -.
T Consensus 352 ~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~ 430 (799)
T KOG4162|consen 352 F-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSH 430 (799)
T ss_pred h-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhh
Confidence 3 223456677777777777777777777766655433343322 222223333 335566666555555441 1 11
Q ss_pred cCcccHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006396 236 LNVIAYSVLLSSMCKS-----------GRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRI 304 (647)
Q Consensus 236 ~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (647)
..+..|..+.-+|... ....++.+.+++..+.+.. |......+.--|+..++++.|.+..++..+-+-
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~ 509 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNR 509 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 1233444444444321 1234566666666655322 222333333445666777777777777766544
Q ss_pred CCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH
Q 006396 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384 (647)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (647)
..+...+..+...+...+++.+|+.+.+.....- ..|......-++.-...++.+++......++.. .. +.
T Consensus 510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~------ 580 (799)
T KOG4162|consen 510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AE------ 580 (799)
T ss_pred CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hh------
Confidence 4555666666666777777777777777665431 111111122223333456677776666655532 00 00
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCC--CCC------HHHH
Q 006396 385 IYGFCKNGKVADARRLLDTIKLH--GLEPSAVTYTTFMNAYCEEG---NIQRLLALLQEMETKAI--GPT------HVTY 451 (647)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~--~~~------~~~~ 451 (647)
......++-....+....+.-. .......++..+.......+ ..+.. +..... .|+ ...|
T Consensus 581 -~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 581 -YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred -hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHH
Confidence 0001111112222222222110 00111112211111111000 01111 111111 122 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCV 530 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 530 (647)
......+.+.++.++|...+.+..+.. +.....|......+...|...+|.+.|..... +.|+ +.+..+++.++.+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHH
Confidence 555566777888888888888877653 55666777777778888999999999998887 5664 7788899999999
Q ss_pred cCChhhHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 531 NGDLKNADC--LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 531 ~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.|+...|.. ++..+.+.+ +.+...|..++..+...|+.+.|.+.|..+.+..
T Consensus 731 ~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 998888877 888888864 5577799999999999999999999999888765
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=6e-11 Score=115.53 Aligned_cols=531 Identities=11% Similarity=0.059 Sum_probs=285.4
Q ss_pred HHHHHhCCCCcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCC
Q 006396 19 IAKMKELDLKVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFG 95 (647)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 95 (647)
+-.+...|+.|+..+|.+++. ..|+.+.|- +|.-|...+.|.....+..++......|+.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334556688899999999999 667888777 8888877777777778888888888888877665 4
Q ss_pred cCHHhHHHHHHHHHhcCChhh---HHHHHHHHHh----CCCCCCHHHHH--------------HHHHHHHhcCCHHHHHH
Q 006396 96 PSVVSLNAIMSRYCKLGFAEV---AKGLFCLMLK----YGLHPDAFSYN--------------ILIHGLCIAGSMEEALE 154 (647)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~ 154 (647)
|...+|..+..+|...|+... ..+.++.+.. .|+......+- ..+......|-++.+.+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998654 3332222221 12111111111 11112222333444444
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 155 FTNDMGRHGVEPDAITYSILAKGFHL-LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
++..+..... +. .....++-... ...+++-..+...... .|+..++..++..-...|+.+.|..++..|.+.|
T Consensus 161 ll~~~Pvsa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 161 LLAKVPVSAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHhhCCcccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 4433321100 00 00011222211 1223333333333322 4788889988888888999999999999999999
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 006396 234 FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGA 313 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (647)
++.+.+-|-.++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|....+. .| .+....+..
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~-sq~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG-SQLAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc-cchhhhhhH
Confidence 88887776666655 7778888888888999999999988888777777755422221 11 122222222
Q ss_pred HHHHHhhcC----------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---Cccc
Q 006396 314 ILLGLCEKE----------MITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP---SIVT 380 (647)
Q Consensus 314 l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 380 (647)
-+..-...| ........+....-.+......+|...... ...|.-+...++-..+..-.... +...
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 222222222 111111222222222333333344333322 22566666666665554321111 1222
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-------CCC
Q 006396 381 FNSLIYGFCKNGKVADARRLLD--TIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AI-------GPT 447 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-------~~~ 447 (647)
+..++.-|.+.-+......++. +..+. ..+....-.+.....+. +...+.+-+...... .+ .+-
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 3333333322211111111111 11110 01111111111111111 122222222111110 00 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN--LEPTSATYNILI 525 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~ 525 (647)
...-+.++..++..-+..+++..-+.....-++ ..|..++.-+...+..+.|..+.++..... +..+...+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 122334444555555555555444433332121 567888888888888888888888876522 233555667788
Q ss_pred HHHhhcCChhhHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHN-ISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEI 586 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 586 (647)
+.+.+.+....+..++.++.+.- ..|+ ..++..++......|+.+...+..+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888887621 1222 3466777788888899888888888888777654
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=1.4e-10 Score=113.01 Aligned_cols=491 Identities=13% Similarity=0.066 Sum_probs=284.7
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 006396 53 DIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD 132 (647)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 132 (647)
.+...|..|+..+|..++..|+..|+.+.|- +|.-|.-...+.+...+..++.+....++.+.+. .|-
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3445677788899999999999999999998 8888877777777888999999888888888776 677
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHhh----CCCCCChhhH---------------HHHHHHHHhcCChhhHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEE---ALEFTNDMGR----HGVEPDAITY---------------SILAKGFHLLSQISGAWKV 190 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~ 190 (647)
+.+|..|..+|...||... ..+.++.+.. .|.- ..+.| ..++....-.|-++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998543 3333333322 1211 11111 1122223334444455555
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006396 191 IQKLLIKGSDPDIVTYTVLICGYCQI-GNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGL 269 (647)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 269 (647)
+..+..... + ..+...++-+... ..+++-..+.....+ .|++.+|..++.+-...|+.+.|..++.+|++.|+
T Consensus 162 l~~~Pvsa~--~-~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAW--N-APFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCcccc--c-chHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 444432210 0 1111123332222 223333333333332 57999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006396 270 KPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIM 349 (647)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (647)
+.+..-|..++-+ .++...++.++..|...|+.|+..|+...+..+..++....+... .+....+.+-
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~---------sq~~hg~tAa 303 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG---------SQLAHGFTAA 303 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc---------cchhhhhhHH
Confidence 8887766666544 788888999999999999999999999998888876653332211 2222233333
Q ss_pred HHHHHhcC----------CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHH
Q 006396 350 IDGYVKLG----------NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG--L-EPSAVTY 416 (647)
Q Consensus 350 ~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~ 416 (647)
+..-.-.| ........+++..-.|+......|...... ..+|.-+....+...+..-- . ..++..+
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 32222233 111122222222222333333344433332 23677777777777665321 1 1234445
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-------CH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQ--EMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI----GVTP-------DQ 483 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-------~~ 483 (647)
..++.-|.+.-+..-...++. +.... ..+....-.+.....+. +...+..-+..+... ...| -.
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 555554443322111111111 11110 00111111111111111 112222222111110 0111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN--ISLTKVAYTTIIK 561 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 561 (647)
..-+.++..++..-+..+++..-++....-+ ...|..|++.+....+.+.|..+..+..... ...+..-+..+.+
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 2334556666666666666655444433211 2678899999999999999999999987432 3345567788899
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006396 562 AHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+.+.+....+..+++++.+
T Consensus 537 LL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhH
Confidence 99999999999999999876
No 66
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.6e-08 Score=100.37 Aligned_cols=546 Identities=12% Similarity=0.111 Sum_probs=291.4
Q ss_pred hHHHhcCChhhHHHHHHHHH----------hCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 006396 4 FVYSRTGMVHDAVFVIAKMK----------ELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGL 73 (647)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (647)
.+|.+.+-+.++.+.|.+.- +.|.+||...+..-+.+ ..+|.+.+....+....+ .......+...+
T Consensus 476 ~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlF 552 (1666)
T KOG0985|consen 476 SIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLF 552 (1666)
T ss_pred HHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHH
Confidence 34555555555555555432 34778887766555544 688999988888776443 223355666666
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCH------------------------------HhHHHHHHHHHhcCChhhHHHHHHH
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSV------------------------------VSLNAIMSRYCKLGFAEVAKGLFCL 123 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~g~~~~a~~~~~~ 123 (647)
...+..+.+...+-.++... .|+. .-+-.++..|.+.|-+..|++.+..
T Consensus 553 me~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 553 MELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred HHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhccc
Confidence 66666666666555554322 1111 1145566677777877777777665
Q ss_pred HHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc--
Q 006396 124 MLKYGLHPDAFSY----NILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK-- 197 (647)
Q Consensus 124 ~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 197 (647)
+..- .....+- --.+..|.-.-.++++.+.++.|...++..+..+...+..-|...-..+...++|+.....
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 5432 1111111 1123344455678888889999888888888888888888888877788888888886543
Q ss_pred ---------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh------------C---------------CCCcCcccH
Q 006396 198 ---------GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS------------Q---------------GFKLNVIAY 241 (647)
Q Consensus 198 ---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~---------------~~~~~~~~~ 241 (647)
+..-|+...-..|.+.++.|++.+..++.++-.- . ++.+|...|
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlY 789 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLY 789 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHH
Confidence 2344666677788888999999998888654311 1 111111111
Q ss_pred ------HHHHHHHHhc----------------------------------------------CChhHHHHHHHHHHHCCC
Q 006396 242 ------SVLLSSMCKS----------------------------------------------GRIDEALGLLYEMEAVGL 269 (647)
Q Consensus 242 ------~~l~~~~~~~----------------------------------------------g~~~~a~~~~~~~~~~~~ 269 (647)
...|..|.+. ++...-...++.....|.
T Consensus 790 Lyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 790 LYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 1112222221 111111222222333343
Q ss_pred CCCHhhHHHHHHHHHccCCH-HHHHH---HHHH-----HHhC------------C--------CCCCcccHHHHHHHHhh
Q 006396 270 KPDLVTYSILIRGLCKQDKV-HKAIQ---LYNE-----MCSK------------R--------ISPNSFAHGAILLGLCE 320 (647)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~-~~a~~---~~~~-----~~~~------------~--------~~~~~~~~~~l~~~~~~ 320 (647)
. |..+++.+...|...++- +.-++ .|+. ..++ | +......+....+.+.+
T Consensus 870 ~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~ 948 (1666)
T KOG0985|consen 870 Q-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVE 948 (1666)
T ss_pred c-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHh
Confidence 3 555555555555554432 21110 1110 0000 0 00011111222222223
Q ss_pred cCCHHHH-----------HHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CccchHHHH
Q 006396 321 KEMITEA-----------RMYFDSLIMSNC--IQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP--SIVTFNSLI 385 (647)
Q Consensus 321 ~~~~~~a-----------~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 385 (647)
..+.+.- +++.+++.+... ..|+.-.+..+.++...+-+.+-++++++++-.+-.- +...-+.++
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI 1028 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH
Confidence 3332211 122333333221 2345555666677777777777777777776431110 111112222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------CC
Q 006396 386 YGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK---------------------AI 444 (647)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~ 444 (647)
-.. -.-+.....++.+++...+ .|+ +.......+-+++|..+|+..... .-
T Consensus 1029 LtA-ikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1029 LTA-IKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAER 1100 (1666)
T ss_pred HHH-hhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 222 2233334444444443322 121 112223333444444444432100 00
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNIL 524 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 524 (647)
-..+..|..+..+-.+.|...+|++-|-+ ..|+..|..++....+.|.+++-.+++..+.+..-+|...+ .|
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--EL 1172 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HH
Confidence 12345677777777777777777765533 34666788888888888888888888887777555555443 67
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
+-+|++.++..+-++++ ..||......++.-|...|.++.|.-+|...
T Consensus 1173 i~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 77788888776655544 3466666777777777777777776666544
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8e-09 Score=96.66 Aligned_cols=126 Identities=16% Similarity=0.026 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
.+..-+..+...|++++|.+...+++..+ +.+...+..-+.++.+.++|++|+.+.+.-... ..+...+..-+-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 34444555666777777777777777665 445556666666677777777777554432110 111111122233444
Q ss_pred hcCChhhHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 180 LLSQISGAWKVIQKLLIKGSDPD-IVTYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
+.+..++|++.++- .+++ ..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 67777777777762 2222 3355555667778888888888888887664
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=2.3e-11 Score=110.01 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (647)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35566777788888888888888888877653 3445677777888888889999999888888764 455667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
.+...|++++|...++++......+ ....+..+..++...|++++|...+.+..+.. +.+...+..++..+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 8888899999999999888732222 45667778888899999999999999988753 345667888889999999999
Q ss_pred HHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 571 KAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 571 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+|...+++++... +.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 187 ~A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTY---------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988764 566777778888888999999999988877654
No 69
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.7e-08 Score=97.99 Aligned_cols=539 Identities=12% Similarity=0.071 Sum_probs=264.7
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhC-C--------CCc-CHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKEL-D--------LKV-SIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVI 70 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~-~--------~~~-~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 70 (647)
|++.|.++.+++.|.-.+-.|... | ..+ +...--++++ ..|-+++|..+|++..+ |..+-
T Consensus 763 mA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlN 833 (1416)
T KOG3617|consen 763 MASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLN 833 (1416)
T ss_pred HHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHH
Confidence 556666666666665555443321 0 012 1122223333 66677777777777665 34455
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
..|-.+|+.++|.++.+.-.+.. =..+|...+.-+...++.+.|++.|++.- .|--.++..|. .++.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~ 900 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPK 900 (1416)
T ss_pred HHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChH
Confidence 55666777777776665443321 23356666666666777777777776542 11111222111 1222
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006396 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (647)
......+.+ .|...|.-....+...|+.+.|+.++..... |-++++..|-.|+.++|-++-++-.
T Consensus 901 ~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg 965 (1416)
T KOG3617|consen 901 QIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG 965 (1416)
T ss_pred HHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc
Confidence 222233322 2334555555556667778888877776543 5566777777788888777766532
Q ss_pred hCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---------------CCHHHHHHH
Q 006396 231 SQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQ---------------DKVHKAIQL 295 (647)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~a~~~ 295 (647)
|......+.+.|...|++.+|...|.+... +...|+.|-.+ .+.-.|...
T Consensus 966 ------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 966 ------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred ------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 445556677788888888888877776543 22222222111 122223333
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHH--------HHHH--cCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 296 YNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFD--------SLIM--SNCIQDVVLYNIMIDGYVKLGNIGEAVQL 365 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 365 (647)
|++.-. .+...+..|.+.|.+.+|+++-- +++. .....|+...+...+.+....++++|..+
T Consensus 1031 yEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1031 YEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333210 11122334455555555544321 1111 12234566666666666666777777666
Q ss_pred HHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006396 366 YRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH-GLEPSA----VTYTTFMNAYCEEGNIQRLLALLQEME 440 (647)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (647)
+-...+ |...+..|. ..+..-..++-+.|.-. .-.|+. ..+..+...|.++|.+..|.+-|.+.-
T Consensus 1103 L~~ar~---------~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1103 LCLARE---------FSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHH---------HHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 654433 222333332 22222223332333211 112332 344556677778888887777665543
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 441 TKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE-------------DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLN 507 (647)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 507 (647)
.+ ...++++.+.|+.++..-+-. -+....-..++.+...++..|.+...++.--.+|+
T Consensus 1173 dK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1173 DK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred hH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHH
Confidence 21 123455566666544211100 01111223445555555555555444444333333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHH
Q 006396 508 QMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA-----------EGDVHKAMTFF 576 (647)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~ 576 (647)
.... + ...-|..+-.+ .|-.++|.+.+.++..++ .....+..|-+-... ..|..+.++-.
T Consensus 1244 ~cAq--i--Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc 1314 (1416)
T KOG3617|consen 1244 SCAQ--I--EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQC 1314 (1416)
T ss_pred HHHH--h--hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3322 1 11111111111 233445555555554332 111122222111111 11333444444
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
+.++...+.++ .-+-...+..++..+....++..|.+.++.+.++.+.-|.-
T Consensus 1315 ~~lleep~ld~----------------~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1315 TTLLEEPILDD----------------IIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLS 1366 (1416)
T ss_pred HHHhhCcCCCC----------------cchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchh
Confidence 44443321111 12335678888999999999999999999999887766543
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=5e-09 Score=97.96 Aligned_cols=224 Identities=13% Similarity=0.044 Sum_probs=116.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL--CIAG 147 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ 147 (647)
++.+...|++++|.....+++..+ +.+...+..-+.++.+.+++++|+.+.+.-.... .-+... +=.+| .+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHHcc
Confidence 455667777777777777777655 2345566667777777777777775544322110 011111 12233 3667
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHHHHHH
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGY-CQIGNVEEGLKLR 226 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~ 226 (647)
..++|...++-. -+.+..+...-...+.+.+++++|..+++.+.+++.+ + +...+.+- ...+-.-.+. +.
T Consensus 94 k~Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-HH
Confidence 777777777622 1223445566666777777788888888777665322 1 11111111 1111001111 11
Q ss_pred HHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-------CCC------CH-hhHHHHHHHHHccCCHHHH
Q 006396 227 EVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG-------LKP------DL-VTYSILIRGLCKQDKVHKA 292 (647)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~~~~~~a 292 (647)
+..... ...+...+......+...|++.+|+++++...+.+ -.- +. ..-..+...+...|+.++|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 111111 11112222333445566777777777777762211 000 00 1123344556677888888
Q ss_pred HHHHHHHHhCCCCCCcc
Q 006396 293 IQLYNEMCSKRISPNSF 309 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~ 309 (647)
..+|...++.. ++|..
T Consensus 244 ~~iy~~~i~~~-~~D~~ 259 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEP 259 (652)
T ss_pred HHHHHHHHHhc-CCCch
Confidence 88888888764 34443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=2.7e-11 Score=122.26 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=146.5
Q ss_pred ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHh---------cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK---------LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
+.++|+..|+++....+. +...+..+..++.. .+++++|...++++++.. +.+..++..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456777777777765432 34455555444332 234677777777777764 4456667777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREV 228 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (647)
+++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.++. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777753 335566777777777777777777777777765332 122233334445566777777777777
Q ss_pred HHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC
Q 006396 229 MLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD-LVTYSILIRGLCKQDKVHKAIQLYNEMCSKR-ISP 306 (647)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 306 (647)
......+.++..+..+..++...|++++|...+.++... .|+ ....+.+...|+..| +.+...++.+.+.. ..+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765532223445666677777778888888777776543 233 333444555556666 36666666655421 111
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 337 (647)
..... ....+.-.|+.+.+..+ +.+.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11122 33334445555555444 555543
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.2e-09 Score=93.35 Aligned_cols=270 Identities=13% Similarity=0.021 Sum_probs=144.7
Q ss_pred CCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH
Q 006396 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384 (647)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (647)
+.+......+...+...|+..++...|+.....+ +-+........-.+.+.|+.+....+...+....- .....|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 3444555556666666666666666666665433 11122222223334455666665555555544310 112222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 385 IYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKL 464 (647)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (647)
.......++++.|..+-++.++.. +-+...+..-...+...+++++|.-.|+..+... +-+..+|..++.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 233334556666666666655442 2334444444455566666666666666655442 23455666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHH
Q 006396 465 QEAVQLLEDMYVIGVTPDQITYNTII-RSFC-KCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
.+|..+-....+. ++.+..++..+. ..+. ...--++|.+++++.+. +.|+ ....+.+...+...|..++++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 6666665555543 344444444442 2222 22234566666666655 4554 444555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 542 VSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++.+. ..||......++..+...+.+++|++.|..++..+
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 66665 35666666666666666666666666666666655
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=8.9e-11 Score=118.58 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCccchHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006396 358 NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFC---------KNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN 428 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 428 (647)
+.++|...|++.++..+. +...+..+..++. ..+++++|...+++..+.. +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456788888888776432 3444544444433 2344788888888888764 4567777778888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQ 508 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 508 (647)
+++|...|++..+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999888764 3445677778888888999999999999988764 22333333444456667889999999888
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 006396 509 MWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEI 586 (647)
Q Consensus 509 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 586 (647)
+.... +| ++..+..+..++...|++++|...+.++... .|+ ......+...+...| ++|...++++.+..
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~--- 503 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE--- 503 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh---
Confidence 87643 34 4666777888888899999999998887653 344 335556666677777 47777777766532
Q ss_pred cchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 587 SIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.............+.-.|+-+.+..+ +++.+.+
T Consensus 504 ------------------~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 ------------------QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ------------------hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11111111245556666777777666 6666544
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=6.4e-09 Score=101.18 Aligned_cols=300 Identities=14% Similarity=0.116 Sum_probs=162.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhc----
Q 006396 36 SLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKL---- 111 (647)
Q Consensus 36 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 111 (647)
.++...|+++.|++.++.... ............+..+.+.|+.++|..+|..++..+|. +...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 344467777777777766443 22234445566677777777777777777777776532 333344444443222
Q ss_pred -CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 006396 112 -GFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME-EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWK 189 (647)
Q Consensus 112 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (647)
.+.+...++++.+... .|...+...+.-.+..-..+. .+...+..+...|+|+ +++.|-..|....+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2355566677766654 333333322222222212232 2344555566666543 45555555554444444444
Q ss_pred HHHHHHhc----CC----------CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCC
Q 006396 190 VIQKLLIK----GS----------DPDI--VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGR 253 (647)
Q Consensus 190 ~~~~~~~~----~~----------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (647)
++...... +. .|+. .++..+...|...|++++|+++++..+...+. .+..|..-.+.+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 44444322 10 1222 13344455666677777777777777766321 34566666777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHH
Q 006396 254 IDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDS 333 (647)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 333 (647)
+.+|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|....... .
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m--------------Q----- 303 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM--------------Q----- 303 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH--------------H-----
Confidence 77777777777665433 555555666666777777777777776655543221111100 0
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 334 LIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE 371 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 371 (647)
-.+.......+|.+.|++..|++.|..+.+
T Consensus 304 --------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 --------CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred --------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112233445677777887777777766654
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1.2e-08 Score=99.28 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=63.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (647)
...|...|++++|.++++..+... |..+..|..-...+-+.|++.+|.+.++........ |...-+..+..+.+.|+.
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH
Confidence 333444444444444444444432 222445555555566666666666666665554333 444445555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006396 395 ADARRLLDTIKLHGLEPSAVT--------YTTFMNAYCEEGNIQRLLALLQEMET 441 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (647)
++|.+++..+.+.+..|.... ......+|.+.|++..|+.-|..+.+
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666665554443221111 12334556666666666665555443
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.3e-08 Score=88.41 Aligned_cols=300 Identities=11% Similarity=0.028 Sum_probs=217.3
Q ss_pred ccHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-ccHHHH
Q 006396 239 IAYSVLLSSMCK--SGRIDEALGLLYEMEAV-GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS-FAHGAI 314 (647)
Q Consensus 239 ~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 314 (647)
......+.++.. .++...+...+-.+... -++-|+.....+...+...|+.++|+..|++.... .|+. ......
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Y 272 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLY 272 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHH
Confidence 333333444333 34444444444333332 24557778899999999999999999999998764 3433 333444
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (647)
...+...|+.+....+...+.... ......|-.-+......+++..|+.+-++.++.... +...+-.-...+...+++
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccch
Confidence 555678899999988888887643 122333333344455678899999999988876433 444455555677889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH
Q 006396 395 ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVI-KGLC-KQWKLQEAVQLLE 472 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~ 472 (647)
.+|.-.|+..+... +-+...|..++.+|...|.+.+|...-+...+. ++.+..+.+.+. ..+. ...--++|.++++
T Consensus 351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 99999999887652 467899999999999999999998887776554 234556665553 3332 2334578999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 473 DMYVIGVTPD-QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 473 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
...+. .|+ ....+.+...+...|..+++..++++.+. ..||....+.|++.+...+.+++|.+.|..++..+
T Consensus 429 k~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 429 KSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88774 444 45677888899999999999999999988 68899999999999999999999999999999853
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=1.1e-10 Score=95.72 Aligned_cols=189 Identities=11% Similarity=-0.045 Sum_probs=120.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|++..|...++++++++| .+..+|..++..|-+.|+.+.|.+.|++++...+. +..+++.....++.+|++++|.+
T Consensus 47 ~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHH
Confidence 66677777777777776554 55566666777777777777777777777665432 55567777777777777777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 006396 120 LFCLMLKYGLHPD-AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG 198 (647)
Q Consensus 120 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (647)
.|+++......+. ..+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.......|++-.|...++.....+
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 7777766532222 3355556555566777777777777766652 3344556666666667777777777777666655
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 199 SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
. ++..+.-..|+.-.+.|+.+.+.+.=..+.+.
T Consensus 204 ~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 204 G-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4 56666666666666677766666655555443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=4.3e-11 Score=102.84 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNA 422 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (647)
-.--+.+..+|.+.|-+.+|.+-++..++. .|-+.||..+-.+|.+..++..|..++.+-.+. ++-++.....+.+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 334467889999999999999999998876 456678888999999999999999999988875 34455555667788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKA 502 (647)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 502 (647)
+-..++.++|.++++...+.. +.+......+...|.-.++++.|+..++++.+.| .-++..|..+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence 888999999999999998864 4566677777778888899999999999999998 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 503 FQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 503 ~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
+..|++....-..|+ .++|..+.......||+..|.+.|+-.+..+ ..+...++.+.-.-.+.|++++|..++..+.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999987433454 7889999999999999999999999998764 4456789999988899999999999999998
Q ss_pred HcC
Q 006396 581 EKG 583 (647)
Q Consensus 581 ~~~ 583 (647)
...
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 765
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.41 E-value=2e-08 Score=96.42 Aligned_cols=364 Identities=15% Similarity=0.085 Sum_probs=200.1
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 006396 111 LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKV 190 (647)
Q Consensus 111 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (647)
..++.+|..+|-+ + | .-...+.+|....++++++.+.+.. |.|.-...-.+.++.+...|+-++|-++
T Consensus 544 ~kkfk~ae~ifle---q----n--~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el 611 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLE---Q----N--ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL 611 (1636)
T ss_pred HhhhhHHHHHHHh---c----c--cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 3456777766632 1 1 1134566777778888888776543 2222223334555666667777666543
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 191 IQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
-. . +..+ .+.|..|.+.|.+-+|.+....=.. +..|......+..++.+..-++.|-.+|+++..
T Consensus 612 k~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---- 676 (1636)
T KOG3616|consen 612 KE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---- 676 (1636)
T ss_pred cc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----
Confidence 21 1 2222 3456778888887777654321111 123555555566666666666777777776652
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006396 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAH-GAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIM 349 (647)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (647)
| ...+..+.+.+-+.+|+++-+-.. +....++ ......+...|+++.|...|-+. ...-..
T Consensus 677 ~-----dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea---------~~~~ka 738 (1636)
T KOG3616|consen 677 F-----DKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEA---------NCLIKA 738 (1636)
T ss_pred H-----HHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh---------hhHHHH
Confidence 1 222333333334555555443321 1111111 12233344556666665554332 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
+.+-....+|.+|+.+++.+..+.. ...-|..+...|+..|+++.|.++|-+.- .++-.+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 5666677788888888887776532 33456667778888888888888775432 345567778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
+.|.++-.+.... ......|..-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 8888776665432 2233445444555566777777776654332 3332 345666666666666666553
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 006396 510 WLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSL 544 (647)
Q Consensus 510 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (647)
.. ..-..+...+..-|...|+++.|...|-++
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 21 111344455555566666666665555444
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=1.5e-10 Score=104.66 Aligned_cols=165 Identities=16% Similarity=0.056 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..+..++..+...|++++|...++++....+ .+...+..++..+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555554322 133445555555555555555555555555543 33344444555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 006396 144 CIAGSMEEALEFTNDMGRHGV-EPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEG 222 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (647)
...|++++|.+.+++..+... +.....+..+..++...|++++|.+.+++....... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555543211 112223333444444444444444444444433111 222333344444444444444
Q ss_pred HHHHHHHHh
Q 006396 223 LKLREVMLS 231 (647)
Q Consensus 223 ~~~~~~~~~ 231 (647)
...++....
T Consensus 189 ~~~~~~~~~ 197 (234)
T TIGR02521 189 RAYLERYQQ 197 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.2e-07 Score=91.45 Aligned_cols=239 Identities=13% Similarity=0.150 Sum_probs=163.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 353 YVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
....+-+++|..+|++.- .+......++. .-++.+.|.+.-+... .+..|+.+..+-.+.+...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 444555666666666542 13333333333 2345555554443332 345788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
++-|-+. .|+..|..+++...+.|.+++-.+.+....+...+|...+ .++-+|.+.+++.+-+++.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh------
Confidence 8766432 3667889999999999999999999988887765665544 7888899998887765543
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 513 NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
.-||......+++-|...|.++.|.-+|... ..|..++..+...|+++.|.+.-+++-. ...|.
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns------~ktWK 1253 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANS------TKTWK 1253 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccc------hhHHH
Confidence 3578888888888899999998888777654 3477788888888888888887776643 23444
Q ss_pred hHHHHhh--------hhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 593 KSFFCMM--------LSNG--FPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 593 ~~~~~~~--------~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.+-|..+ .-+| +-...+-...++.-|...|-+++-+.+++..+
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3322222 2222 23446667788888888999999888877654
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=1.5e-08 Score=100.65 Aligned_cols=564 Identities=10% Similarity=-0.010 Sum_probs=323.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
...+...|...|-+.++.++ .-..+|..|+..|+...+.-+|...|+.+-+.+.. +...+-.....|++..+++.|..
T Consensus 470 ~rK~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHH
Confidence 34456777777777776443 34568899999999888889999999999886543 66788889999999999999998
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 120 LFCLMLKYGLHPD--AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 120 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
+.-...+.. +.. ...|..+.-.|...++...|..-|+...+.. |.|...|..+..+|...|.+..|.++|.+....
T Consensus 548 I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 548 ICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 854443321 111 2223334555677889999999999998873 558899999999999999999999999888765
Q ss_pred CCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCcCcccHHHHHHHHHhcCChhHHHHHHHH-------
Q 006396 198 GSDPDIV-TYTVLICGYCQIGNVEEGLKLREVMLSQG------FKLNVIAYSVLLSSMCKSGRIDEALGLLYE------- 263 (647)
Q Consensus 198 ~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------- 263 (647)
.|+.. .--......+..|.+.+++..++.+...- ...-..++..+...+...|-...+..++++
T Consensus 626 --rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 --RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred --CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33321 11223344577899999999888876531 111222333333333333433333333333
Q ss_pred HHHCCCCCCHhhHHHHHHHHHc---cC--CH-HHHHHHHH-HHHhCCC--------------------CCCcccHHHHHH
Q 006396 264 MEAVGLKPDLVTYSILIRGLCK---QD--KV-HKAIQLYN-EMCSKRI--------------------SPNSFAHGAILL 316 (647)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~---~~--~~-~~a~~~~~-~~~~~~~--------------------~~~~~~~~~l~~ 316 (647)
........+...|..+-.+|.- .. -+ .....++. +....+. ..+..++..++.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 2222212233333332222211 00 00 00011111 1111111 122334444444
Q ss_pred HHhh-------c-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHH
Q 006396 317 GLCE-------K-EMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGF 388 (647)
Q Consensus 317 ~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (647)
.|.+ . .+...|...+...++.. ..+..+|+.|.-. ...|++.-+...|-+-....+. ...+|..+.-.+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 3332 1 12234555555555432 2355666665544 5557777777777665554332 556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 389 CKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEM--E--TKAIGPTHVTYTVVIKGLCKQWKL 464 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~ 464 (647)
....+++.|...|....... +.+...|..........|+.-+...+|..- . ..|--|...-|-.........|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 88889999999998887653 445555555544455667777777777651 1 123334444444444455566666
Q ss_pred HHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHhh
Q 006396 465 QEAVQLLEDMYVI---------GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH-NLEPTSATYN----ILIDGLCV 530 (647)
Q Consensus 465 ~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~ 530 (647)
++-+...+++... +.+.+.+.|...+...-..+.+..|.+...+.+.- -.+-+...|+ .+.+.++.
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 6554444433221 34556667777777777777777777776665430 0122333333 44566666
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HH
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QE 609 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 609 (647)
.|+++.|..-+..... ..+......-+ +..-.|+++++.+.|++++... .+ ..+ +.
T Consensus 1020 lgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis--~s-----------------e~d~vv 1076 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSIS--NS-----------------ESDKVV 1076 (1238)
T ss_pred hcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhc--cc-----------------ccchhh
Confidence 7777766554433221 11111111111 2244588888888888887643 00 111 34
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
....++.+...+|..+.|+..+-+...
T Consensus 1077 Ll~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1077 LLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 445555666666666666666555443
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.39 E-value=6.9e-08 Score=96.08 Aligned_cols=561 Identities=12% Similarity=0.016 Sum_probs=296.1
Q ss_pred ChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 11 MVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQE 88 (647)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 88 (647)
....|...|-+.++.+.. ....++...+. ..-+...|.+.|+.+-+-+. .+..++-.....|....+.+.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 367788888888887543 22233333333 22366678888888876554 5667778888888888888888887554
Q ss_pred hhcCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006396 89 TAGKEFG-PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD 167 (647)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (647)
..+..+. .-...|....-.|...++...|..-|+..++.. +.|...|..+..+|.++|++..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 4432211 112245555556777888888888888888775 556778888888888888888888888887654 232
Q ss_pred -hhhHHHHHHHHHhcCChhhHHHHHHHHHhcC------CCCCcchHHHHHHHHHhcCChHHHHHHHHHH-------HhCC
Q 006396 168 -AITYSILAKGFHLLSQISGAWKVIQKLLIKG------SDPDIVTYTVLICGYCQIGNVEEGLKLREVM-------LSQG 233 (647)
Q Consensus 168 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~ 233 (647)
...-.-........|++.+++..+....... ..--..++......+...|-..++..+++.. ....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111222334455788888887777665431 0101122222223333333333333333332 2222
Q ss_pred CCcCcccHHHHHHHHHhcCChh------HHHHHH-HHHHHCCC--------------------CCCHhhHHHHHHHHHc-
Q 006396 234 FKLNVIAYSVLLSSMCKSGRID------EALGLL-YEMEAVGL--------------------KPDLVTYSILIRGLCK- 285 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~------~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~- 285 (647)
...+...|..+.++|.-.-..+ ....++ .+....+. ..+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1222333333332222111000 001111 11111111 1123344444443333
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006396 286 -------QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGN 358 (647)
Q Consensus 286 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (647)
..+...|+..+.+.++. ..+...+...+......|.+.-+...|-.-.... +....+|..+...+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEeccc
Confidence 12234667777776654 3344444444444555566666666555444433 4456677777778888889
Q ss_pred HHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006396 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIK--L--HGLEPSAVTYTTFMNAYCEEGNIQRLLA 434 (647)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 434 (647)
++-|...|.......+. +...|-.........|+.-+...+|..-- . .|--++..-|..........|+.++-+.
T Consensus 866 ~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 99999999888765332 55566555555566777777777776521 1 2223333333333333445555554433
Q ss_pred HHHHHHh---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHHhcCCHH
Q 006396 435 LLQEMET---------KAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI-GVTPDQITYN----TIIRSFCKCKDLR 500 (647)
Q Consensus 435 ~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~ 500 (647)
..+.+.. .+.+.....|..........+.++.|.....+.+.. ....+...|+ ...+.++..|+++
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 3333221 133445566766666666677777776666655421 0122222232 3344455566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH-NISLTK-VAYTTIIKAHCAEGDVHKAMTFFCQ 578 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (647)
.|..-+..... ..+..+-..-+. ..-.|+++++.+.|+++... +...+. .....++.+....+..+.|...+-+
T Consensus 1025 ~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1025 SAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred hHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 55443332221 111111111111 12356777777777777752 111121 2345555666666777777766666
Q ss_pred HHHcC
Q 006396 579 MVEKG 583 (647)
Q Consensus 579 ~~~~~ 583 (647)
.....
T Consensus 1101 ~~~ls 1105 (1238)
T KOG1127|consen 1101 VKSLS 1105 (1238)
T ss_pred HHHhC
Confidence 65543
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=9.3e-08 Score=93.10 Aligned_cols=476 Identities=13% Similarity=0.107 Sum_probs=231.8
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
+..-...|++++|.++|+++.+. -..|.+.+.+|++++|.++-+.-.+. .=..+|...+..+...++.+.|
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 34456789999999999999986 35788888999999999987753321 2234788888888899999999
Q ss_pred HHHHHHhhcCCCC-------------------cCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 83 ILFLQETAGKEFG-------------------PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 83 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
++.|++.....+. .+...|.-...-+-..|+.+.|+.+|..+.. |-.++...
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 9999876421110 1222222223333344555555555544431 33445555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC------
Q 006396 144 CIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIG------ 217 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 217 (647)
+-+|+.++|-++.++- .|....-.|.+.|...|++.+|..+|-+... +...|+.|-.++
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 5556666665555433 2344445566666666666666666655432 222222221111
Q ss_pred ---------ChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH--------HHHC--CCCCCHhhHHH
Q 006396 218 ---------NVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYE--------MEAV--GLKPDLVTYSI 278 (647)
Q Consensus 218 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~ 278 (647)
+.-.|-++|++.-. -+......|-+.|.+.+|+++--+ +... ....|....+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 11122222222110 011222334444544444433211 1111 11223334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCCCc----HHHHHHHHHHH
Q 006396 279 LIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM-SNCIQD----VVLYNIMIDGY 353 (647)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~----~~~~~~l~~~~ 353 (647)
-...++...++++|..++-...+. ...+..| ...+..-..++-+.|.- .+..|+ ...+..+...|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREF---------SGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 444445555555555554433221 0111111 11111111111111111 101122 23455667778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHH---------HH----HHHHHCCCCCCHHHHHHHH
Q 006396 354 VKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARR---------LL----DTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---------~~----~~~~~~~~~~~~~~~~~l~ 420 (647)
.++|.+..|-+-|.+.-++ -..++++.++|+.++..- +| +.+.....+.++.+...++
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~ 1226 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIE 1226 (1416)
T ss_pred HhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhH
Confidence 8888888887777654332 123455555665443211 00 1112223455666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----------H
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI----------I 490 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~ 490 (647)
..|.+...++..-..|+....- ....|...-.+ .|-.++|.+.+.++...+ .....++.| +
T Consensus 1227 tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l 1297 (1416)
T KOG3617|consen 1227 TFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQL 1297 (1416)
T ss_pred hhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHH
Confidence 6666555454444444433221 11111111111 233455555555554332 111122222 1
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 491 RSFC-KCKDLRKAFQLLNQMWLHNLEP----TSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 491 ~~~~-~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+... -..|....++-...+.+....| ....|..|+..+....++..|-+.+.++..+
T Consensus 1298 ~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1298 RKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 1111 0124444555555555533333 2456777888888888888888888888775
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=1e-09 Score=101.15 Aligned_cols=225 Identities=11% Similarity=-0.027 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 392 GKVADARRLLDTIKLHG-LEP--SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAV 468 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (647)
+..+.++..+.+++... ..| ....|..+...|...|+++.|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776532 122 24567777888899999999999999988864 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 469 QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
..+++..+.. +.+..++..+..++...|++++|.+.++...+ ..|+..........+...+++++|...+.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 9999999864 44567888888889999999999999999998 4454322222223344567899999999776643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006396 549 ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVF 628 (647)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 628 (647)
.+|+. |. ........|+..++ ..++.+.+.. ...+. . -+...++|..++..+.+.|++++|+
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~-~~~~~-l------------~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGA-TDNTE-L------------AERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcC-CCcHH-H------------HHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 23332 22 23344456666554 3445444211 00000 0 0334679999999999999999999
Q ss_pred HHHHHHHhCCC
Q 006396 629 ELAAVMIKSGL 639 (647)
Q Consensus 629 ~~~~~~~~~~~ 639 (647)
..|+++++.++
T Consensus 257 ~~~~~Al~~~~ 267 (296)
T PRK11189 257 ALFKLALANNV 267 (296)
T ss_pred HHHHHHHHhCC
Confidence 99999998764
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=2.9e-09 Score=87.51 Aligned_cols=199 Identities=14% Similarity=0.048 Sum_probs=156.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
...+.-.|...|++..|..-+++..+.. +.+..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456667888899999988888888874 3345578888888888899999999998888764 5566778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|.+++|...|++++....-| -..+|..++.+..+.|+.+.|...+++.++.. +..+.+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 889999999999888743222 36788888888888999999999999988853 3345578888888899999999999
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
++++....+ ++..+.....++.-.+.|+.+.|.++=..+...-
T Consensus 195 ~~~~~~~~~---------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 195 YLERYQQRG---------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHhcc---------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 998888877 5777777777788888888888877766665543
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=2.7e-09 Score=98.43 Aligned_cols=220 Identities=13% Similarity=-0.023 Sum_probs=142.5
Q ss_pred hcCChhHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhh
Q 006396 40 NLRHTDIMWDLYDDIKVSET---PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 116 (647)
..+..+.++..+.+++...+ ...+..|..++..+...|+.++|+..|++++...+. +...|+.+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 34566777777777775322 122445778888888888888888888888876543 56788888888888889998
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
|...|+++++.. +.+..++..+..++...|++++|.+.|+...+.. |+..............++.++|...+++...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888888764 4456677778888888888888888888887753 3322222222234456778888888866553
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC---cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006396 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ---GFK---LNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG 268 (647)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 268 (647)
.. .|+...+ . ......|+...+ +.++.+.+. ... .....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2222211 2 222334554443 233333321 111 123467777778888888888888888877653
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=2.5e-09 Score=102.54 Aligned_cols=204 Identities=16% Similarity=0.115 Sum_probs=146.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETK-----A-IGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI-----GV-TPDQ- 483 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~- 483 (647)
.+...|...+++.+|..+|+++... | ..|. ..+++.|...|.+.|++++|...++++.+. +. .|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4666777888888888888876542 2 1122 235666777788888888888877776542 11 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC--C
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLH---NLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH----NI--S 550 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~ 550 (647)
..++.++..|...+.++.|..+++...+. -+.++ ..+++.|...|...|++++|.+++++++.. +- .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 24566777788889999999998887651 11222 567899999999999999999999998853 11 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 551 LT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 551 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
+. ...++.+...|.+.+++++|.++|.+..... + ...-+.|....+|..|+.+|.+.|+++.|.+
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~-------------~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-K-------------LCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-H-------------HhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 22 3467889999999999999999999886532 0 0011123446889999999999999999999
Q ss_pred HHHHHH
Q 006396 630 LAAVMI 635 (647)
Q Consensus 630 ~~~~~~ 635 (647)
+.+.+.
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 988876
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=4.5e-07 Score=87.42 Aligned_cols=312 Identities=13% Similarity=0.066 Sum_probs=184.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG 147 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (647)
..++.|.+.|.+..|......-.. ...|..+...+..++.+..-+++|-.+|+++.. + ...+..|-+-+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHccc
Confidence 445667777777766654322111 224566677777777777777777777777652 1 22233333333
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYS-ILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLR 226 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (647)
-+.+|.++.+-. +|..+.+.. ....-+...|+++.|..-|-+.. .....+.+......+.+|+.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHH
Confidence 355566555443 332332221 22233445566666665554332 2234456667778888888888
Q ss_pred HHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006396 227 EVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 306 (647)
+.+.... ....-|..+.+.|...|+++.|.++|-+.- .++..|..|.+.|.|+.|.++-++.... ..
T Consensus 756 dniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~--e~ 822 (1636)
T KOG3616|consen 756 DNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGP--EA 822 (1636)
T ss_pred HHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCc--hh
Confidence 8877653 233446677788888888888888886542 3456677888888888888887776432 33
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY 386 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (647)
....|..-..-+-..|.+.+|+++|-.+.. |+ ..+..|-+.|..+..+++..+.... .-..|...+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAK 890 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHH
Confidence 334455555556677888888777644322 22 3466777778777777776654321 12234445556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006396 387 GFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437 (647)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (647)
-+-..|+...|..-|-+.. .|.+-+++|-..+.|+.|.++-+
T Consensus 891 e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 6666777777776654432 24455556666666666655543
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.9e-08 Score=89.71 Aligned_cols=434 Identities=16% Similarity=0.053 Sum_probs=223.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 006396 69 VIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD-AFSYNILIHGLCIAG 147 (647)
Q Consensus 69 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 147 (647)
-++..+..|+++.|+..|..++...+. |...|..-..+|...|++++|++=-.+..+. .|+ +..|.....+..-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 456778889999999999999887654 7778888888999999999988877776665 555 447888888888889
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hHHHHHHH
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN-VEEGLKLR 226 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 226 (647)
++++|+.-|.+-++. .+.+...++-+..++ ..+.+. +.. .-++..|..+..--..+.- .+.+....
T Consensus 85 ~~~eA~~ay~~GL~~-d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK-DPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred cHHHHHHHHHHHhhc-CCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999999988775 233445555555555 111111 100 1123333332221111110 11111111
Q ss_pred HHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006396 227 EVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA-----VGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCS 301 (647)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (647)
......+ +.. +..+....++..+...+..... .|..+. .....+. ..+.
T Consensus 152 l~~~~~~----p~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~-----------~~~~~p~------~~~~- 205 (539)
T KOG0548|consen 152 LEIIQKN----PTS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEIL-----------ASMAEPC------KQEH- 205 (539)
T ss_pred HHHhhcC----cHh----hhcccccHHHHHHHHHHhcCccccccccccccC-----------CCCCCcc------cccC-
Confidence 1111111 100 0111111111111111111000 000000 0000000 0000
Q ss_pred CCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccch
Q 006396 302 KRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTF 381 (647)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 381 (647)
.|.+ ..++..+-.+. ..-..-...+.....+..++..+++.+....+.. .+..-+
T Consensus 206 ---~~~~-----------~~~d~~ee~~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~ 260 (539)
T KOG0548|consen 206 ---NGFP-----------IIEDNTEERRV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYL 260 (539)
T ss_pred ---CCCC-----------ccchhHHHHHH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHH
Confidence 0000 00000000000 0011122334445555555666666666555543 244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTY-------TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVV 454 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (647)
+....+|...+.+..+....+...+.|. -....+ ..+..+|.+.++++.++..|+........|+..
T Consensus 261 ~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l----- 334 (539)
T KOG0548|consen 261 NNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL----- 334 (539)
T ss_pred HHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-----
Confidence 4455555555555555555554444331 111112 223345555677777777777765543333221
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQ-ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGD 533 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 533 (647)
.+....++++...+...-.+ |.. .-...-.+.+.+.|++..|...|.+++..+ +.|...|....-+|.+.|.
T Consensus 335 ----s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 335 ----SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE 407 (539)
T ss_pred ----HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh
Confidence 22233444554444443322 221 112222556667788888888888888753 3367788888888888888
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+..|+.-.+..++.+ ++....|..=+.++....+|++|++.|.+.++.+
T Consensus 408 ~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 408 YPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888877777742 3334466666777777778888888888888776
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=6.1e-07 Score=78.49 Aligned_cols=326 Identities=13% Similarity=0.061 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHH
Q 006396 206 YTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTY-SILIRGLC 284 (647)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 284 (647)
...+...+...|++..|+.-|....+.+.. +..++..-...|...|+...|+.-+..+.+. +||-..- ..-...+.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 344556666777777777777777665211 2223333445677788888888878777765 6664321 12234566
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006396 285 KQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (647)
++|.+++|..-|+..++.. |+..+ ..++..-+..+. ........+..+...|+...++.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHH
Confidence 7888888888888887762 32211 111111111110 11122233444556778888888
Q ss_pred HHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006396 365 LYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI 444 (647)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (647)
....+++. .++|...+..-..+|...|++..|+.=+....+.. ..+...+..+-..+...|+.+.++...++..+.
T Consensus 177 ~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 177 MITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 88877775 34566666677778888888888877776666543 445556666667777778888877777777765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--CHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-P--TSATY 521 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p--~~~~~ 521 (647)
.|+....... -..+.+..+.++.|.+ ....+++.++.+..+...+.... + ....+
T Consensus 253 dpdHK~Cf~~------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 253 DPDHKLCFPF------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred CcchhhHHHH------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 4555422111 1112222333332222 12334555555555555552211 0 12233
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..+-.++...|++.+|++...++++. .|+ ..++..-+.+|.....++.|+.-|+++.+.+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 44455555666666666666666653 333 4466666666666666666666666666554
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.6e-08 Score=93.87 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=164.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------
Q 006396 381 FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTV------- 453 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 453 (647)
...+.....+..+++.+.+-+....... .+..-++....+|...|.+..+...-....+.|- ....-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3456777778888999999998888763 4555667777788888888887777666665542 12222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNG 532 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 532 (647)
+..++.+.++++.++..+.+.......|+.. .+....+++....+...- +.|. ..-...-+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 3345566778888999998877654443322 233445555555555444 3443 233334477888999
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHH
Q 006396 533 DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICE 612 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (647)
++..|...|.+++..+ |.|...|...+-+|.+.|.+..|+.-.+..++.+ |+....|.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~---------------------p~~~kgy~ 430 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD---------------------PNFIKAYL 430 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------------chHHHHHH
Confidence 9999999999999975 5567799999999999999999999999999987 77788888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 613 VMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.=+.++....+++.|.+.|.+.++.++
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888999999999999999999998774
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=5.6e-09 Score=100.23 Aligned_cols=236 Identities=23% Similarity=0.164 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcC-----C-CCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-C
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGK-----E-FGPSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKY-----GL-H 130 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~-----~~-~ 130 (647)
.+...++..|..+|+++.|+..++.+++. | ..|... ....++..|...+++.+|..+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666666666666666665442 1 012222 2233555556666666666666665542 10 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHhc---CC
Q 006396 131 P-DAFSYNILIHGLCIAGSMEEALEFTNDMGRH-----G-VEPDA-ITYSILAKGFHLLSQISGAWKVIQKLLIK---GS 199 (647)
Q Consensus 131 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 199 (647)
| -..+++.|...|.+.|++++|...+++..+. | ..|.+ ..++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1224455555566666666655555544321 0 01111 11233344444455555555554443321 01
Q ss_pred CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhCC----C--C-cCcccHHHHHHHHHhcCChhHHHHHHHHHHH--
Q 006396 200 DPD----IVTYTVLICGYCQIGNVEEGLKLREVMLSQG----F--K-LNVIAYSVLLSSMCKSGRIDEALGLLYEMEA-- 266 (647)
Q Consensus 200 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 266 (647)
.++ ..+++.+...|...|++++|.++++.++... . . -....++.+...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 1234444555555555555555554443321 0 0 0122334444444444444444444443221
Q ss_pred --CCCC-C-CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 267 --VGLK-P-DLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 267 --~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
.|.. | ...+|..|...|...|+++.|+++.+.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1111 1 1233444444455555555554444443
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.19 E-value=1.1e-07 Score=91.87 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=103.2
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCC-CcCHHHHH---HHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDL-KVSIQTYN---SLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQ- 75 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~---~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 75 (647)
++..+...|+.++|...+.+..+... .++..... .++. ..|+++.|.+.+++++...| .+...+.. ...+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~ 89 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGL 89 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHh
Confidence 34555666677776666666655432 12222111 2222 66777777777777766443 34333332 222222
Q ss_pred ---cCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 76 ---QSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEA 152 (647)
Q Consensus 76 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 152 (647)
.|....+...+...... .+........+...+...|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 33444444444331111 11122334455556667777777777777777664 44455666667777777777777
Q ss_pred HHHHHHHhhCCCC-CCh--hhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 153 LEFTNDMGRHGVE-PDA--ITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 153 ~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777776654221 121 2244566667777777777777777643
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.18 E-value=7.8e-07 Score=77.86 Aligned_cols=332 Identities=11% Similarity=0.084 Sum_probs=230.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFS-YNIL 139 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 139 (647)
.++.-...++..++..|++.+|+..|-.+++.++. +-.++..-...|...|+...|+.=+.++++. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 45555677889999999999999999999985422 3335666677899999999999999999987 777542 2334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
...+.++|.+++|..-|+...+.. |+..+ ...++.+.-..++-+. ....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCch
Confidence 456789999999999999998763 33221 1112221111111111 22234455678999
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
..|+.....+++.. +.+...+..-..+|...|....|+.-++...+..- -++.++..+-..+...|+.+.++...++.
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998874 44788888899999999999999988888776532 35566667778888899999999999988
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
++. .|+.......- ..+.+..+.++. +....+.++|-++++..+...+..+.....
T Consensus 250 LKl--dpdHK~Cf~~Y------KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 250 LKL--DPDHKLCFPFY------KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred Hcc--CcchhhHHHHH------HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence 875 45543221111 111111122211 223456778888888888887765442222
Q ss_pred ---chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 380 ---TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 380 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
.+..+-.++...+++.+|++...++.... +.|+.++..-..+|.....++.|+.-|+...+.+
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 34445567777888999999988888752 3447788888888888888999999888888763
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.2e-07 Score=89.65 Aligned_cols=200 Identities=13% Similarity=-0.025 Sum_probs=101.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCC-CcCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEF-GPSV-VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
.+..|..++..+...|+++.+...+.+.....+ .++. .........+...|++++|...++++.+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 344555666666666666666665555543322 1121 223333334556677777777777766652 333333331
Q ss_pred HHHHH----hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 140 IHGLC----IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 140 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
...+. ..+....+.+.++.... ..+........+...+...|++++|.+.+++....... +...+..+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 11111 23334444444433111 11112223334445566666777777777666665322 34455566666666
Q ss_pred cCChHHHHHHHHHHHhCCCC-cCc--ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFK-LNV--IAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
.|++++|...++........ ++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 67777777766666554221 111 123345666666677777777766654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=2.6e-07 Score=79.09 Aligned_cols=352 Identities=13% Similarity=0.082 Sum_probs=200.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHH-HHHHH
Q 006396 170 TYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSV-LLSSM 248 (647)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 248 (647)
-+.+.+..+.+..++..|++++..-.+...+ +....+.+..+|....++..|-..++.+... .|...-|.. -.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3455555566667777777777666555221 4455666666777777777777777777655 233333322 34556
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHH
Q 006396 249 CKSGRIDEALGLLYEMEAVGLKPDLVTYSILI--RGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITE 326 (647)
Q Consensus 249 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 326 (647)
.+.+.+..|+++...|.+. ++...-..-+ ......+++..+..++++.... .+..+.........+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHH
Confidence 6677778888887777642 2222111111 2233567777777777776532 244445555555667888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccch----HHHHHHHHhcCCHHHHHHHHH
Q 006396 327 ARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTF----NSLIYGFCKNGKVADARRLLD 402 (647)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~ 402 (647)
|.+-|....+.+.-.+...|+..+ ++.+.|+.+.|++...+++++|++..+..- ...+.+- ..|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHH
Confidence 888888887766555556666544 455678899999999999888765333211 0011100 00110 00000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006396 403 TIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK-AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP 481 (647)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 481 (647)
.. -...+|.-...+.+.++++.|.+.+-+|..+ ....|++|...+.-. --.+++.+...-+.-+.... |-
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CC
Confidence 00 1123444445567788889888888888643 223456665544322 12345555555555555543 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHh-hcCChhhHHHHHHHHH
Q 006396 482 DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-PTSATYNILIDGLC-VNGDLKNADCLLVSLQ 545 (647)
Q Consensus 482 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 545 (647)
...||..++-.||+..-++.|-.++.+-...... .+...|+. ++++. ..-..++|.+-+..+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 5678888888899888888887777654321111 12333433 33333 3345666666555544
No 98
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=2.3e-10 Score=72.73 Aligned_cols=49 Identities=41% Similarity=0.924 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 99
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=2.6e-10 Score=72.51 Aligned_cols=49 Identities=43% Similarity=0.837 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC 494 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 494 (647)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776665
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.9e-07 Score=78.82 Aligned_cols=355 Identities=16% Similarity=0.140 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNI-LIHGLC 144 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 144 (647)
++..+..+.+..++.+|++++..-.+..+. +...+..+..+|....++..|-.-++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 555555666666777777766665554322 4555666666666667777777777666654 344333322 234445
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 006396 145 IAGSMEEALEFTNDMGRHGVEPDAI--TYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEG 222 (647)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (647)
+.+.+.+|+.+...|... ++.. +...-..+....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566666666666666321 1111 11111112223455555555555543211 233333333344455555555
Q ss_pred HHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 223 LKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
.+-|+...+-+--.....|+ +.-+..+.|+++.|++...++.+.|++..... +. |.. ..
T Consensus 164 vqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPEl-gI--------Gm~-----------te 222 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPEL-GI--------GMT-----------TE 222 (459)
T ss_pred HHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc-Cc--------cce-----------ec
Confidence 55555554432111222333 22233344455555555555555444311110 00 000 00
Q ss_pred CCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCccch
Q 006396 303 RISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-RISPSIVTF 381 (647)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 381 (647)
| ||.... ..-..+.... -...+|.-...+.+.|+++.|.+.+.+|.-+ ....|+.|.
T Consensus 223 g--iDvrsv-------------gNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 223 G--IDVRSV-------------GNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred c--Cchhcc-------------cchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 0 000000 0000000000 1223444455566778888888877776432 122355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH-H
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GPTHVTYTVVIKGL-C 459 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-~ 459 (647)
..+.-.- ..+++....+-+.-+.... +-...||..++-.|++..-++-|-.++.+-...-. -.+...|+.+ .++ .
T Consensus 281 HN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt 357 (459)
T KOG4340|consen 281 HNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALIT 357 (459)
T ss_pred hHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHh
Confidence 4443322 2334444444444444443 34456777778888888777777777654322110 1122333322 232 2
Q ss_pred hcCCHHHHHHHHHHHH
Q 006396 460 KQWKLQEAVQLLEDMY 475 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~ 475 (647)
-.-.++++.+-++.+.
T Consensus 358 ~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLA 373 (459)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2345566655554443
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=2.3e-05 Score=86.15 Aligned_cols=340 Identities=13% Similarity=0.009 Sum_probs=210.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCC------CCc--HHHHHHHHHHHH
Q 006396 283 LCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNC------IQD--VVLYNIMIDGYV 354 (647)
Q Consensus 283 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 354 (647)
....|+++.+..+++.+.......++.........+...++++++...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777766666542211112222333344455677888888888877654211 111 112223344566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHH
Q 006396 355 KLGNIGEAVQLYRQLIEKRISPSI----VTFNSLIYGFCKNGKVADARRLLDTIKLHGL---EP--SAVTYTTFMNAYCE 425 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 425 (647)
..|+++.|...++.........+. ...+.+...+...|+++.|...+.......- .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988764211121 2334455667789999999999888764211 11 12344556677888
Q ss_pred cCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHH
Q 006396 426 EGNIQRLLALLQEMETK----AIG--P-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG--VTP--DQITYNTIIRSFC 494 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 494 (647)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988876542 211 1 22334455566777899999999988876531 112 2334445666778
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHH--H--HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHh
Q 006396 495 KCKDLRKAFQLLNQMWLH--NLEPTSA--T--YNILIDGLCVNGDLKNADCLLVSLQEHNISLTK---VAYTTIIKAHCA 565 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~~--~~~p~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 565 (647)
..|+++.|.+.+..+... ....... . ....+..+...|+.+.|..++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999999887651 1111111 1 111224445688999999988776542111111 124567788899
Q ss_pred cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.|++++|...++++.... ...+.+. ...+...++.++.+.|+.++|.+.+.++++..
T Consensus 704 ~g~~~~A~~~l~~al~~~----------------~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENA----------------RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHH----------------HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987642 1111222 24567788899999999999999999988653
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.08 E-value=1.2e-05 Score=75.13 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG---NIQRLLALLQEMETKA-IGPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
.+++..+++..+..-...+..+|..+...--..- ..+.....++...... +.|+ .+|...++.-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3556666665554322233333433332211112 2556666666665542 2333 457777777778888999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 470 LLEDMYVIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 470 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
+|.++.+.+..+ +..+..+++..|+. +|..-|.++|+--++. ...++.--...++-+...++-..|..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999877666 66777888887764 8999999999988773 23345555677788888899999999999999876
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 549 ISLTK--VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 549 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
++++. ..|..++.--..-|+...++++-++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66654 4899999988889999999888877654
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.5e-08 Score=92.44 Aligned_cols=259 Identities=12% Similarity=0.071 Sum_probs=170.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 353 YVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
+.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+.+..+.. +.+...+..|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 44556666666666666665433 55566666666666666666666666666543 34455566666666666666666
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 433 LALLQEMETKAIG--------PTHVTYTVVIKGLCKQWKLQEAVQLLEDM-YVIGVTPDQITYNTIIRSFCKCKDLRKAF 503 (647)
Q Consensus 433 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 503 (647)
+..|+.-.....+ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6666655432100 00000000 0111112233444444444 44554578888889999999999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 504 QLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 504 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+|+.++. ++| |..+||.|+..++...+.++|+..|+++++ +.|+.. +...++-.|...|.+++|.+.|-.++.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 667 689999999999999999999999999998 678765 888899999999999999999998875
Q ss_pred cCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 582 KGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
..-. +..+ .....++..+|..|=.++.-.++.|-+.++
T Consensus 527 mq~k-s~~~----------~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRK-SRNH----------NKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhc-cccc----------ccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 3300 0000 000112457888887888888877755443
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=4.3e-05 Score=84.09 Aligned_cols=372 Identities=10% Similarity=-0.023 Sum_probs=222.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV 289 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 289 (647)
...+...|++.+|.......... ..-..............|+++.+...+..+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 34455566666665544332111 0000111122233455677777777766653211111222233444555677899
Q ss_pred HHHHHHHHHHHhCCCC------CCc--ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhcC
Q 006396 290 HKAIQLYNEMCSKRIS------PNS--FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDV----VLYNIMIDGYVKLG 357 (647)
Q Consensus 290 ~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 357 (647)
+++..++......--. +.. .........+...|++++|...++.........+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999888877543100 111 11122234456788999999999887653211221 23455666778899
Q ss_pred CHHHHHHHHHHHHHCCCC---C--CccchHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHH
Q 006396 358 NIGEAVQLYRQLIEKRIS---P--SIVTFNSLIYGFCKNGKVADARRLLDTIKL----HGLE--P-SAVTYTTFMNAYCE 425 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~ 425 (647)
+++.|...+++....... + ...+...+...+...|+++.|...+++... .+.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999887753111 1 122344556677889999999998887654 2211 1 22334455566777
Q ss_pred cCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHh
Q 006396 426 EGNIQRLLALLQEMETK--AIGPT--HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-PDQITY-----NTIIRSFCK 495 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~ 495 (647)
.|++++|...+.+.... ...+. ...+..+...+...|++++|...++.+...... .....+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999998876542 11122 234444566777899999999998887652111 111111 112244456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcC
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPT---SATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLT-KVAYTTIIKAHCAEG 567 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g 567 (647)
.|+.+.|..++........... ...+..+..++...|++++|...++++... |...+ ..+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 7899999999877654211111 112456778888999999999999988753 22222 235667788899999
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
+.++|...+.++++..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=1.4e-08 Score=92.08 Aligned_cols=252 Identities=14% Similarity=0.098 Sum_probs=141.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHH
Q 006396 316 LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVA 395 (647)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (647)
+-+.-.|.+..++.-.+ ........+......+.+++...|+.+.++ ..+... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34455677777776555 222222223334455667777788766543 232222 2455555555555444434445
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 396 DARRLLDTIKLHGLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 396 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
.+..-++........+ +..........+...|+++.|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544444433332222 2222222234455667788777776542 35566666777778888888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 006396 475 YVIGVTPDQITYNTIIRSFC----KCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550 (647)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 550 (647)
.+. ..| .+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.++.+.+ +
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 233 33333444433 223577888888887653 45677777778888888888888888887777643 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 006396 551 LTKVAYTTIIKAHCAEGDV-HKAMTFFCQMVEKG 583 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 583 (647)
-++.++..++-+....|+. +.+.+++.++....
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 3455777777777777777 55666777766654
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=7e-08 Score=90.51 Aligned_cols=229 Identities=14% Similarity=0.026 Sum_probs=134.9
Q ss_pred cCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH
Q 006396 29 VSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY 108 (647)
Q Consensus 29 ~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (647)
|++.--.-.+-+-|++..|.-+|+.++..+| .+.++|..|+......++-..|+..++++++..+. +..++..++.+|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSy 363 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSY 363 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence 4443333333355667777777777766554 66777777777777777777777777777776533 566777777777
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHhh-CCCCCChhhHHHHHHHH
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI---------HGLCIAGSMEEALEFTNDMGR-HGVEPDAITYSILAKGF 178 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 178 (647)
...|.-..|...++..++.. +|-. |.... ..+.....+....++|-++.. .+..+|+.....|.-.|
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~-p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNK-PKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhC-ccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 77777777777777776542 1110 10000 000111122333444444433 23335666666666666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-cccHHHHHHHHHhcCChhHH
Q 006396 179 HLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VIAYSVLLSSMCKSGRIDEA 257 (647)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 257 (647)
--.|++++|...|+..+...+. |...|+.|...+....+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 6667777777777776665222 4556677666666666677777777776665 333 34555666666677777776
Q ss_pred HHHHHHHH
Q 006396 258 LGLLYEME 265 (647)
Q Consensus 258 ~~~~~~~~ 265 (647)
.+.|-...
T Consensus 518 ~~hlL~AL 525 (579)
T KOG1125|consen 518 VKHLLEAL 525 (579)
T ss_pred HHHHHHHH
Confidence 66665543
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.96 E-value=3.9e-07 Score=94.14 Aligned_cols=236 Identities=14% Similarity=0.051 Sum_probs=164.7
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcC-CCCcC---HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 006396 50 LYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGK-EFGPS---VVSLNAIMSRYCKLGFAEVAKGLFCLML 125 (647)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 125 (647)
-|+.... +.|.+...|...+...++.++.++|+.++++++.. ++.-. ..+|.+++......|.-+...++|+++.
T Consensus 1446 Dferlvr-ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVR-SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHh-cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 4444444 33366777888888888888888888888888753 22211 2267777777777787778888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-Ccc
Q 006396 126 KYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP-DIV 204 (647)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 204 (647)
+.- ..-..|..|...|.+.+.+++|-++++.|.+. +......|...+..+.+.++-+.|..++.+..+.-++. ...
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 752 22346778888888888888888888888776 44567788888888888888888888888887652221 122
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHH
Q 006396 205 TYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL--VTYSILIRG 282 (647)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 282 (647)
.....+..-.+.|+.+.+..+|+..+...++ -...|+.+++.-.+.|+.+.++.+|+++...++.|-. ..|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 3444555566778888888888888876433 5667888888888888888888888888877665432 344444444
Q ss_pred HHccCCHH
Q 006396 283 LCKQDKVH 290 (647)
Q Consensus 283 ~~~~~~~~ 290 (647)
--+.|+-+
T Consensus 1681 Ek~~Gde~ 1688 (1710)
T KOG1070|consen 1681 EKSHGDEK 1688 (1710)
T ss_pred HHhcCchh
Confidence 44444433
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=4.7e-05 Score=71.41 Aligned_cols=186 Identities=12% Similarity=0.142 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 006396 324 ITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG---NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRL 400 (647)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (647)
.+++..+++..+..-...+..+|..+...--..- ..+....++.+++.....--.-+|...+....+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566665554322223333433332211111 2556666777666543232345677788888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 401 LDTIKLHGLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 479 (647)
|.+..+.+..+ ++...++++..|+ .++..-|.++|+--.++- ..+..--...+.-+...++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 6777788888665 477888999998766542 22333344556667778888899999999988765
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 480 TPD--QITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 480 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+++ ..+|..++.--..-|++..+.++-++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 46899999888889999988888877665
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=6.8e-08 Score=87.57 Aligned_cols=257 Identities=12% Similarity=0.022 Sum_probs=166.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (647)
++-+.-.|++..++.-.+ .....-.........+.+++...|+.+.+.. .+.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 455667799999887666 2222111223344566788888888775543 333333 55555555555544443455
Q ss_pred HHHHHHHHHHHHCCCCCCccch-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTF-NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQE 438 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (647)
+.+..-++........+...++ ......+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554433222122222 23334566789999998887642 4567778889999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 439 METKAIGPTHVTYTVVIKGLC----KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
|.+. ..|. +...+..++. ...++.+|..+|+++.+. .++++.+++.+..+....|++++|.+++.+....+
T Consensus 157 ~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 9875 3343 3444444433 234689999999998765 57889999999999999999999999999988743
Q ss_pred CCCHHHHHHHHHHHhhcCCh-hhHHHHHHHHHHcCCCCCHH
Q 006396 515 EPTSATYNILIDGLCVNGDL-KNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 554 (647)
+-++.+...++.+....|+. +.+.+++.++... .|+..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 33588888888888888888 6678888888874 45433
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=1.5e-07 Score=80.47 Aligned_cols=156 Identities=8% Similarity=0.015 Sum_probs=116.0
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
+..|+..|+++.+....++.... .. -....++.+++...++..+...+ .+...|..++..+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~~-----~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----LH-----QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----cc-----cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 35688888888876665433221 10 00124566788888888887665 7888999999999999999999
Q ss_pred HHHHHHhhcCCCCcCHHhHHHHHHHH-HhcCC--hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 83 ILFLQETAGKEFGPSVVSLNAIMSRY-CKLGF--AEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
...|+++....+. +...+..+..++ ...|+ .++|.++++++++.+ +.+..++..+...+...|++++|...|+++
T Consensus 93 ~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999887643 677777777764 66676 589999999999886 557778888888888999999999999998
Q ss_pred hhCCCCCChhhH
Q 006396 160 GRHGVEPDAITY 171 (647)
Q Consensus 160 ~~~~~~~~~~~~ 171 (647)
.+. .+|+..-+
T Consensus 171 L~l-~~~~~~r~ 181 (198)
T PRK10370 171 LDL-NSPRVNRT 181 (198)
T ss_pred Hhh-CCCCccHH
Confidence 887 34454443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=3.8e-07 Score=78.00 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=98.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDL 499 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 499 (647)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777877776444322211 11 01123556677777777766654 66777788888888888888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-hhcCC--hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEP-TSATYNILIDGL-CVNGD--LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
++|...+++..+ +.| +...+..+..++ ...|+ .++|.++++++.+.+ +.+..++..++..+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888777 344 577777777753 56666 478888888888753 34556777777788888888888888
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
|+++++..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 88887766
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.91 E-value=0.0001 Score=73.68 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=118.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..+++..|.+...++....| ....+--.=+-.+.+.|+.++|..+++.....+.. |..++..+-..|.+.|+.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~P-n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHP-NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44566666666666655221 22222222222445777777777666655544332 55566666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhhHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ----------ISGAWK 189 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~ 189 (647)
+|+++.+. .|+......+..+|+|.+++.+-.+.--++-+. .+-+...+=+++..+..... ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 77777765 455555566666666666655443333333332 23333333333333332110 123445
Q ss_pred HHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006396 190 VIQKLLIKG-SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS-QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267 (647)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 267 (647)
.++.+.+.+ ..-+..-.......+...|.+++|.+++..-.. .-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555543 111222233333445567778888887743332 222223333345566677777777777777777766
Q ss_pred C
Q 006396 268 G 268 (647)
Q Consensus 268 ~ 268 (647)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=2.5e-07 Score=83.03 Aligned_cols=187 Identities=14% Similarity=0.058 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT-H---VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQI-- 484 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 484 (647)
.....+..+...+...|+++.|...|+++.... |+ . ..+..+..++...|++++|...++++.+.. +.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 445566667777777888888888888776652 32 1 355666777777788888888888877643 21221
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 485 -TYNTIIRSFCKC--------KDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 485 -~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
++..+..++... |+.+.|.+.++.+... .|+ ...+..+...... .. .. ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~----~~-------~~-------~~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYL----RN-------RL-------AG 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHH----HH-------HH-------HH
Confidence 344445555443 5677777777777763 343 2222222111100 00 00 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
....++..+...|++++|+..++++++.. |+ -|.....+..++.++.+.|++++|..+++.+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~----------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENY--PD----------------TPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHC--CC----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12356677899999999999999999864 00 1334689999999999999999999999988
Q ss_pred HhCC
Q 006396 635 IKSG 638 (647)
Q Consensus 635 ~~~~ 638 (647)
....
T Consensus 230 ~~~~ 233 (235)
T TIGR03302 230 GANY 233 (235)
T ss_pred HhhC
Confidence 7764
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=5.8e-08 Score=78.38 Aligned_cols=96 Identities=7% Similarity=-0.136 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA 565 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (647)
+......+...|++++|...|+.++... +.+...|..++.++...|++++|...|+++.+.+ +.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666667777777777777777632 2256677777777777777777777777777643 4455677777777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 006396 566 EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~ 583 (647)
.|++++|+..|+++++..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777765
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=6.1e-07 Score=92.77 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=163.0
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLH-GLEP---SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYT 452 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (647)
+...|-..|..+...++.++|+++.+++... ++.- -...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777888888888888877653 1111 12356666666666677777888888877642 2334577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHh
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLC 529 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 529 (647)
.|...|.+.+.+++|.++++.|.+. +.-....|...+....+..+-+.|..++.++++. -| ........+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7778888888888888888888875 3456677888888888888888888888888873 33 3444455556666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC--
Q 006396 530 VNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-- 607 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 607 (647)
+.|+.+.+..+|+..+.. .|.-...|+.+++.-.++|+.+.++.+|++++..+ ++|.
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~--------------------l~~kkm 1670 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK--------------------LSIKKM 1670 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC--------------------CChhHh
Confidence 788888888888888764 34556688888888888888888888888888877 3332
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
-..|..++.---..|+-+.+..+=.++.+
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 44555666555566776666555555544
No 116
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=4.3e-06 Score=77.04 Aligned_cols=220 Identities=6% Similarity=-0.024 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG-NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKL--QEA 467 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a 467 (647)
.+..++|.....+++... +-+...|+....++...+ ++++++..++.+.+.+ +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 345556666666655532 222334444444444444 4566677666666553 33444555444444444442 556
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc---CCh----hhHHHH
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN---GDL----KNADCL 540 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 540 (647)
+.+++++++.. +-+..+|.....++...|+++++++.++++++.+ .-+...|+....++.+. |+. +++...
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66776776654 4566677777777777777777777777777743 22455666655555443 222 356666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 541 LVSLQEHNISLTKVAYTTIIKAHCAE----GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
..+++... +-|...|..+...+... ++..+|...+.++.+.+ +....+...|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~s~~al~~l~d 263 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD---------------------SNHVFALSDLLD 263 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc---------------------CCcHHHHHHHHH
Confidence 66666642 44556777766666652 34455777777766544 445566666666
Q ss_pred HHHcCC------------------CHHHHHHHHHHHHh
Q 006396 617 AFHQGG------------------DLGSVFELAAVMIK 636 (647)
Q Consensus 617 ~~~~~g------------------~~~~A~~~~~~~~~ 636 (647)
.|.... ..++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 264 LLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 665432 34667777777743
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.86 E-value=1.3e-06 Score=74.09 Aligned_cols=157 Identities=19% Similarity=0.169 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..+-..+...|+-+....+........ +.+.......+....+.|++..|+..+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444445555555555555554433221 2233344445556666666666666666666543 55666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|+++.|..-|.+..+ +.| ++...+.+...|.-.|+++.|..++......+ +-|..+-..+..+....|++.+|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666666666666 333 35555666666666666666666666666532 22444555566666666666666665
Q ss_pred HHH
Q 006396 576 FCQ 578 (647)
Q Consensus 576 ~~~ 578 (647)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=4e-07 Score=87.95 Aligned_cols=218 Identities=13% Similarity=0.131 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006396 344 VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAY 423 (647)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 423 (647)
..-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+-.+. +|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344556777888899999999998764 4566788999999999999998888874 78999999888887
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 424 CEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAF 503 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 503 (647)
....-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +....+|-....+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777789999988876543 11122222344789999999999888764 566778888888889999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 504 QLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 504 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+.|...+. ..|+ ...||.+..+|.+.|+..+|...++++.+.+ ..+...|..........|.+++|++.+.++...
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999988 6775 8899999999999999999999999999876 556668888888889999999999999998864
Q ss_pred C
Q 006396 583 G 583 (647)
Q Consensus 583 ~ 583 (647)
.
T Consensus 617 ~ 617 (777)
T KOG1128|consen 617 R 617 (777)
T ss_pred h
Confidence 3
No 119
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=3.6e-06 Score=77.53 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=124.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG-FAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
-.++...++.++|+..+.+++...+. +..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 33444566777777777777765432 3445665555666666 4677777777777654 3444455554444444444
Q ss_pred H--HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CC----h
Q 006396 149 M--EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQI---GN----V 219 (647)
Q Consensus 149 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~ 219 (647)
. +++..+++.+.+.. +.+..+|+...-++...|+++++++.++++++.++. +..+|+.....+.+. |. .
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 2 55666776666653 346667777777777777777777777777766433 455555554444333 22 2
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKS----GRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (647)
+..++....++...+. +...|+.+...+... ++..+|.+.+.+....+ ..+......++..|+.
T Consensus 200 e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4556666566655433 666777777777663 33455777776665543 2245566666776664
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=1.4e-06 Score=84.40 Aligned_cols=215 Identities=12% Similarity=0.045 Sum_probs=173.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
.-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+-.++ +|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456777888899999999998765 4666788999999999999998887774 789999988888877
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
...-+++|.++.+..-.. .-..+.......++++++.+.|+.-.+ +.| -..+|-.++.+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHH
Confidence 766678888877654331 112222233457999999999999888 444 5889999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 539 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
+.|..... ..|+ ...|+.+..+|.+.|+..+|...++++.+-+ ..+..+|-...-.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---------------------~~~w~iWENymlv 596 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---------------------YQHWQIWENYMLV 596 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---------------------CCCCeeeechhhh
Confidence 99999988 3554 5699999999999999999999999999876 4556677777888
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 006396 618 FHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~ 637 (647)
..+-|.+++|.+.+.++...
T Consensus 597 svdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 88999999999999998754
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=0.00024 Score=71.12 Aligned_cols=520 Identities=14% Similarity=0.089 Sum_probs=281.8
Q ss_pred HhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 006396 7 SRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAIL 84 (647)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 84 (647)
+..+++.+|.....+.++..++ +....+.++.. +.|+.++|..+++.....+. .|..+...+-.+|...|+.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 3467899999999998887432 23334444444 99999999999988776555 477788888999999999999999
Q ss_pred HHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHHH
Q 006396 85 FLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG-S---------MEEALE 154 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~ 154 (647)
+|+++.... |+......+..+|.+.+++.+-.++--++.+. .+.+++.|=++++.+...- . ..-|..
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999998864 56778888888999998887655554444443 2444555545555554321 1 123555
Q ss_pred HHHHHhhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHH-HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 155 FTNDMGRHG-VEPDAITYSILAKGFHLLSQISGAWKVIQK-LLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
.++.+.+.+ .-.+..-...-...+...+++++|++++.. ....-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666666543 222233333444556678899999999843 333322223333345567778889999999999998888
Q ss_pred CCCcCcccHHHHHHHHHh----------------cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---ccCCHHHHH
Q 006396 233 GFKLNVIAYSVLLSSMCK----------------SGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLC---KQDKVHKAI 293 (647)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~ 293 (647)
|.. | |....+.+.+ .+..+...+...+..... ....|-+-+.++. .-|+.+++.
T Consensus 256 ~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 256 GND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred CCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHH
Confidence 643 2 3333332211 112222222222222210 1122333333333 346777665
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC--cHHH---HHHHHHHHHhcC-----CHHHHH
Q 006396 294 QLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQ--DVVL---YNIMIDGYVKLG-----NIGEAV 363 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~---~~~l~~~~~~~~-----~~~~a~ 363 (647)
..|-+-.. ..| .+..=+..|...=.......++.......... |... +...+..-.-.| .-+...
T Consensus 329 ~~y~~kfg--~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 329 SYYFKKFG--DKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHhC--CCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 44433211 111 11111111211112222222222222211000 0000 111111111112 122222
Q ss_pred HHHHHHH---HCC------CCCCccc---------hHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006396 364 QLYRQLI---EKR------ISPSIVT---------FNSLIYGFCKNGKVA---DARRLLDTIKLHGLEPSAVTYTTFMNA 422 (647)
Q Consensus 364 ~~~~~~~---~~~------~~~~~~~---------~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (647)
.++++.. ++| .-|+..+ .+.++..|.+.++.. +|+-+++...... +.|..+--.+++.
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiri 482 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHH
Confidence 3332221 222 2223322 345677888888765 4444444444432 4455666778899
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKA 502 (647)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 502 (647)
|.-.|-+..|.++|+.+--+.+..|...|.. .+-+...|++..+...+....+.--..-..+-..+..+| +.|.+.+.
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI 560 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKI 560 (932)
T ss_pred HHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhh
Confidence 9999999999999999887777666655433 344566788888877777666531111112223334444 44666655
Q ss_pred HHHHH---HHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 503 FQLLN---QMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 503 ~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
.++.. ++.......-..+-+..++.....++.++-...+..|.
T Consensus 561 ~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 561 PEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 44432 22221111123334555666666777776666666554
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=3.8e-07 Score=73.67 Aligned_cols=123 Identities=10% Similarity=-0.031 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
..+++...+. .|+ .+......+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+.+...
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566666654 344 35567778889999999999999999875 668889999999999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 006396 513 NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAH 563 (647)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 563 (647)
+ +.+...+..++.++...|++++|...|+++++. .|+ ...+.....++
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNAQ 136 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 2 336899999999999999999999999999985 454 44554444433
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=6e-06 Score=69.41 Aligned_cols=189 Identities=12% Similarity=0.113 Sum_probs=96.8
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 391 NGKVADARRLLDTIKL---HG-LEPSAV-TYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQ 465 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (647)
..+.++..+++..+.. .| ..++.. .+..+.-+....|+.+-|...++.+...- +-+...-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3556666666666553 12 223322 23333444445566666666666655542 112221111112233456666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 466 EAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+|.++++.+.+.. |.|..++..=+...-..|..-+|++-+...++. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666666544 444445544444444455555666655555553 34466666666666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 006396 546 EHNISLTKVAYTTIIKAHCAEG---DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 583 (647)
-.. |.++..+..+...++-.| +.+-|.++|.++++..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 521 223334455555544433 4445666666666554
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=2.8e-06 Score=86.60 Aligned_cols=135 Identities=9% Similarity=0.064 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNI 523 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 523 (647)
..+...+..|.....+.|++++|..+++...+.. +.+......++..+.+.+.+++|...+++... ..| +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 4456677777777777788888888888777742 33445666677777777888888888887777 344 4666677
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+..++.+.|++++|..+|+++...+ +.+..++..++.++...|+.++|...|+++++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7777777888888888888887632 3345677777777888888888888888877654
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=4.7e-06 Score=70.73 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 006396 102 NAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLL 181 (647)
Q Consensus 102 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (647)
......+...|+-+....+........ +.+.......+....+.|++..|...+.+.... -++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 555666666676666666666544332 445555555666667777777777777777665 356677777777777777
Q ss_pred CChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
|+++.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+.. +..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777666655222 3455666666666777777777777766655322 5556666666677777777776665
Q ss_pred HHH
Q 006396 262 YEM 264 (647)
Q Consensus 262 ~~~ 264 (647)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=2.7e-06 Score=76.39 Aligned_cols=187 Identities=12% Similarity=0.041 Sum_probs=130.3
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-HHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA---VTYTTFMNAYCEEGNIQRLLALLQEMETKAIG-PT-HVTY 451 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~ 451 (647)
....+......+...|+++.|...++.+.... +.+. ..+..+..++...|++++|...++.+.+..-. |. ...+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566777888899999999999999998753 2222 46677888999999999999999999876311 11 1245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 452 TVVIKGLCKQ--------WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNI 523 (647)
Q Consensus 452 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 523 (647)
..+..++... |++++|.+.++.+.+.. +.+...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 5555566544 78899999999998753 223333322221111 000 00 011235
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNI--SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...|...|++++|...++++.+... +.....+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66778899999999999999997521 1234688899999999999999999988887643
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.69 E-value=1.3e-05 Score=81.84 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=131.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 409 LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
.+.++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|+..+++..... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 3567888999999999999999999999999986 455 4567778889999999999999999999864 55667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+. ..+....|+.++ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------H
Confidence 88889999999999999999999832 334889999999999999999999999999985 244445554443 3
Q ss_pred CHHHHHHHHHHHHH
Q 006396 568 DVHKAMTFFCQMVE 581 (647)
Q Consensus 568 ~~~~A~~~~~~~~~ 581 (647)
+...-..++++..-
T Consensus 231 ~~~~~~~~~~~~~~ 244 (694)
T PRK15179 231 DLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHHcCc
Confidence 44455555665543
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=6.6e-07 Score=72.25 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
..+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..++.++...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 334444444444444444444444421 1234444444444444444444444444444432 22333444444444444
Q ss_pred CCHHHHHHHHHHHHHc
Q 006396 567 GDVHKAMTFFCQMVEK 582 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~ 582 (647)
|++++|...++++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4444444444444443
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=9.4e-06 Score=83.59 Aligned_cols=224 Identities=8% Similarity=0.060 Sum_probs=160.5
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA-VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVI 455 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (647)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4567788888888999999999999877665 3443 3334444456666665444433 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
.......++.....+...+... .-+...+..+..+|.+.|+.++|..+|+++++.+ +-|+.+.|.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3334444554444444455542 3455678889999999999999999999999954 34799999999999999 999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhh-hhHHHHhhhhCCCCCCHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDY-TKSFFCMMLSNGFPPDQEICEVM 614 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 614 (647)
+|.+++.++... +...+++.++..+|++++... |+..++ ...........+...-...+..+
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 999999998763 566678888888888888754 332223 33333344444666667888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 615 LIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 615 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
-..|...++|+++..+++.+++..++
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 88999999999999999999987654
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=3e-05 Score=79.98 Aligned_cols=218 Identities=11% Similarity=0.090 Sum_probs=110.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 421 (647)
+...+..|+..+...+++++|.++++...+..+. ....|..+...+.+.++.+.+..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 4556667777777777777777777766554221 333333344455555554444333 1 222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 501 (647)
......++..+..+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +-++.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222233333333333333332 1233355566666666666666666666666654 45556666666666666 6666
Q ss_pred HHHHHHHHHhCCC---CCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 502 AFQLLNQMWLHNL---EPT--SATYNILIDGLCVNGDLKNADCLLVSLQEH-NISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 502 A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|.+++.+++..-+ .++ ...|..++ ....-+.+.-.++.+++... |..--..++..+...|-...+|++++.+
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLV--HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHH--hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 6666666554200 000 01111110 00111222333333333322 2222233555566677777888889999
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
++.+++..
T Consensus 246 LK~iL~~~ 253 (906)
T PRK14720 246 LKKILEHD 253 (906)
T ss_pred HHHHHhcC
Confidence 98888876
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2.5e-05 Score=72.54 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 536 (647)
+...|.+++|+..++.+++. .+.|+..+......+.+.++.++|.+.+++++. ..|+ ......+..+|.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 34456666777766666654 244555555556666667777777777777666 3454 5555666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
|+.++++.... .+.|+..|..+.++|...|+..+|....
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 77777666654 2555666777777776666665555433
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=4e-05 Score=65.19 Aligned_cols=216 Identities=12% Similarity=0.034 Sum_probs=96.9
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
+-+.-.|+|..++..-....... .+......+.++|...|.+.....-. .... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhH
Confidence 34455666666666555443321 23444455666666666665443322 1111 222222332322222222322
Q ss_pred HHH-HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 151 EAL-EFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 151 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
.-. ++.+.+.......+......-...|...+++++|++...... +......=+..+.+..+++.|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233333332222222222222334555566666655554411 2222222233444555555555555555
Q ss_pred HhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 230 LSQGFKLNVIAYSVLLSSMCK----SGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
.+.+ +..+.+-|..+|.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++....+
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5431 33344444444433 23455555555555542 3455555555555555555666666555555544
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=4.3e-06 Score=67.44 Aligned_cols=110 Identities=17% Similarity=0.046 Sum_probs=68.7
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 006396 50 LYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL 129 (647)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 129 (647)
.+++++...+ .+......++..+...|++++|...|+.+...++ .+...+..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3444444332 3445555666666677777777777777665442 255566666667777777777777777666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 130 HPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445556666666666777777777777766664
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00033 Score=59.30 Aligned_cols=203 Identities=17% Similarity=0.146 Sum_probs=153.6
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 355 KLGNIGEAVQLYRQLIEK---R-ISPSIVT-FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
...+.++..+++..+... | ..++..+ +..++-+....++.+.|...++.+...- +-+...-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 356789999999888753 3 3444443 3445566778899999999999988763 44444443334445668999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
++|+++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999876 556677777677777788888999988888876 6889999999999999999999999999999
Q ss_pred HhCCCCC-CHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 510 WLHNLEP-TSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 510 ~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
+- +.| ++..|..+.+.+...| +.+.|.++|.+.++.+ +.+...+..+..++
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~-~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN-PKNLRALFGIYLCG 235 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC-hHhHHHHHHHHHHH
Confidence 98 455 6888888888877665 6777999999999843 12444555444333
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=3.1e-05 Score=71.98 Aligned_cols=124 Identities=13% Similarity=0.052 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 566 (647)
.....+...|.+++|+..++.++.. .+-|+..+....+.+...++.++|.+.++++... .|+ ...+..+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 3444556779999999999998874 3446888888899999999999999999999984 565 56788999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
|++.+|+.+++...... |.++..|..|+.+|...|+..+|.....+..
T Consensus 388 g~~~eai~~L~~~~~~~---------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 388 GKPQEAIRILNRYLFND---------------------PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CChHHHHHHHHHHhhcC---------------------CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999876 7778888888888877777666665555544
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3e-07 Score=52.04 Aligned_cols=32 Identities=50% Similarity=0.992 Sum_probs=21.9
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 268 GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
|+.||..+|+.+|.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777666665
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=1.1e-05 Score=65.70 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT---SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTII 560 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 560 (647)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....|+ ......++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 3677777777777777632 112 33344456777778888888888888887542222 12455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
..+...|++++|+..++..... +..+..+...+.+|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~----------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE----------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc----------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888887653221 334556777888888888888888887764
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00012 Score=62.30 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 006396 106 SRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQIS 185 (647)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (647)
+-+.-.|++..++..-+..... +.+...-..+-++|...|++.... .++.... .|.......+.......+..+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3344456666665554444332 123333334445555566544322 2222211 222222222222222233333
Q ss_pred hHH-HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 186 GAW-KVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 186 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
..+ ++.+.+.......+......-...|+..|++++|++...... +......=...+.+..+++.|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 233333333222222222333445666777777776665421 2223333334555666677777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 006396 265 EAVGLKPDLVTYSILIRGLCK----QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 337 (647)
.+.. +..+.+.|..++.+ .+.+..|.-+|++|.++ .+|++.+.+....++...+++++|..+++.....
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6531 34444444444432 34466666666666553 2444444444444444444444444444444433
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.5e-07 Score=51.79 Aligned_cols=31 Identities=39% Similarity=0.755 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 444 IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.41 E-value=1.4e-05 Score=75.22 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
....++..+...++++.|..+++++.+. .|+. ...+++.+...++-.+|.+++.+.++. .+-+...+..-+..+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 3445566666777888888888887763 3443 334667777777778888888888764 2445556666677788
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
..++++.|+.+.++++... |.+...|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~ls---------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS---------------------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888876 6667888888888888888888888777665
No 141
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=1.1e-05 Score=63.69 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.+...+...|++++|.++|+-+.. +.| +..-|..|+-++-..|++++|+..|.++...+ +.++..+..++.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444455666666666655555 233 34555555555555566666666666555533 23444555555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 006396 567 GDVHKAMTFFCQMVE 581 (647)
Q Consensus 567 g~~~~A~~~~~~~~~ 581 (647)
|+.+.|++.|+.++.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666555554
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=3.6e-05 Score=62.58 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD---QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNIL 524 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l 524 (647)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677788877788877753 333 23344455677788888888888888887542222 2344556
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..++...|++++|+..++..... ...+..+...+.++...|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888888888888888664332 234456677888888888888888888865
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=2.1e-06 Score=62.07 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=54.7
Q ss_pred cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHH
Q 006396 531 NGDLKNADCLLVSLQEHNIS-LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE 609 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (647)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++ .+.+ +.+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---------------------~~~~~ 59 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---------------------PSNPD 59 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---------------------HCHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---------------------CCCHH
Confidence 46778888888888774321 1344566677888888888888888877 4333 34455
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
....++.++.+.|++++|++.++++
T Consensus 60 ~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 60 IHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 6666678888888888888877653
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=1.4e-05 Score=60.13 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++++....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------- 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------- 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 3445556666677777777777666542 2333456666666666777777777777766654
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+.+...+..++..+...|++++|...++++.+.+
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 65 ----PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 4455666677777777777777777777666544
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=4.2e-05 Score=60.06 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
+..++..+...|++++|.+.+.++.+.. +.+ ...+..++.++...|++++|...++.+.... |
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p----------- 70 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--P----------- 70 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--C-----------
Confidence 3444555555566666666665555431 111 2344455555666666666666666655433 0
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.+....++..++.++.+.|++++|.+.++++++..|
T Consensus 71 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 71 -----KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred -----CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 0011234555555666666666666666666655543
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=7.4e-06 Score=56.60 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGG-DLGSVFEL 630 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~ 630 (647)
++.+|..++..+...|++++|+..|+++++.+ |.+..+|..++.++.+.| ++++|++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---------------------PNNAEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---------------------TTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence 45688999999999999999999999999988 778999999999999999 79999999
Q ss_pred HHHHHhCCC
Q 006396 631 AAVMIKSGL 639 (647)
Q Consensus 631 ~~~~~~~~~ 639 (647)
++++++.+|
T Consensus 61 ~~~al~l~P 69 (69)
T PF13414_consen 61 FEKALKLDP 69 (69)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHcCc
Confidence 999998664
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00014 Score=66.09 Aligned_cols=257 Identities=12% Similarity=0.043 Sum_probs=131.1
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 397 (647)
+.+...+..|+..+...+... +.+..-|..-+..+...|+++++.--.+.-++.... .+......-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 344455555555555555543 223444444455555566666665555444432111 122233333444444444444
Q ss_pred HHHHH---------------HHHHCCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 006396 398 RRLLD---------------TIKLHGL-EPSAVTYTTF-MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG--L 458 (647)
Q Consensus 398 ~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 458 (647)
...++ .+..... +|.-..+..+ ..++.-.+++++|...--.+.+.. ..+ .+...+++ +
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~ 213 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCL 213 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhccccc
Confidence 43333 1111111 1222333322 234455677777776666665542 112 22223332 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITY-------------NTIIRSFCKCKDLRKAFQLLNQMWLH---NLEPTSATYN 522 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~ 522 (647)
.-.++.+.+...|++.+.. .|+.... ..-.+-..+.|++..|.+.|.+.+.. +..|+...|.
T Consensus 214 yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 3456777777777777654 3332211 11122234567777777777777762 2334455566
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
....+..+.|+.++|+.-.+++.+. .+. ...+..-+.++...++|++|.+.++++.+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666777777777777777652 222 2244445566666777777777777776654
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.14 E-value=4.4e-05 Score=72.39 Aligned_cols=93 Identities=14% Similarity=-0.001 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.-...+...|++++|+..|+++++. .| +...|..+..+|...|++++|+..++++++.+ +.+...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 3455667789999999999999984 44 58888899999999999999999999999853 44666889999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 006396 567 GDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~ 583 (647)
|++++|+..|++++..+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999987
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=8.3e-05 Score=70.07 Aligned_cols=128 Identities=19% Similarity=0.149 Sum_probs=89.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
......++..+...++++.|+.+|+++.... |+ ....+++.+...++-.+|.+++.+.++.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344455666667778888888888877653 33 34446677777777777888877777653 4455566666667
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
+...++++.|+++.+++.+. .|-+-.+|..|..+|...|+++.|+..++.+..
T Consensus 244 Ll~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77788888888888888775 344556788888888888888888877777654
No 150
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.14 E-value=0.0011 Score=53.23 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-PTSATYNI 523 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~ 523 (647)
.|+...-..+..++.+.|+..+|...|++...--+..|...+..+.++....+++..|...++.+.+.+.. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666667777777777777777777766445566666777777777777777777777777663210 02344455
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
+.+.|...|++.+|+.-|+.+... -|+...-......+.+.|+..+|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777777777777777777763 4555544444555666666666554444443
No 151
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=5.5e-05 Score=65.83 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 536 (647)
+.+.+++.+|+..|.++++.. +-|.+.|..-..+|.+.|.++.|.+-.+..+. +.|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 445566666666666666542 34455555556666666666666666666655 4443 5566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~ 556 (647)
|++.|++.++ +.|+..+|
T Consensus 168 A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc--cCCCcHHH
Confidence 6666666665 44554443
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.0016 Score=52.32 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAY 556 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 556 (647)
.|+...-..|..+....|+..+|...|++...--...|..+...+.++....+++..|...++++.+.+ | ++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 444444445555555556666666555555543233355555555555555555555555555555432 2 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..+.+++...|++..|...|+.+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 44445555555555555555555553
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=2.7e-05 Score=67.72 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK-VAYTTIIKAHCAEG 567 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 567 (647)
..-..+.+++.+|+..|.++++ +.| |...|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 4445677888888888888888 555 577777788888888888888888888887 44543 48888888888888
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
++++|++.|+++++..
T Consensus 164 k~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELD 179 (304)
T ss_pred cHHHHHHHHHhhhccC
Confidence 8888888888888876
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.10 E-value=5.5e-05 Score=59.85 Aligned_cols=93 Identities=8% Similarity=-0.192 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006396 67 SIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIA 146 (647)
Q Consensus 67 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (647)
..++..+...|++++|..+|+......+. +..-|..+..++-..|++++|+..|..+.... +.++..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33344444445555555555444433221 33344444444444455555555554444443 23344444444444445
Q ss_pred CCHHHHHHHHHHHhh
Q 006396 147 GSMEEALEFTNDMGR 161 (647)
Q Consensus 147 ~~~~~a~~~~~~~~~ 161 (647)
|+.+.|.+.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555544444443
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=1.8e-05 Score=53.86 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.++..+...|++++|+..|+++++.. |.+..++..++.++.+.|++++|...++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999987 778999999999999999999999999999986
Q ss_pred CC
Q 006396 638 GL 639 (647)
Q Consensus 638 ~~ 639 (647)
.|
T Consensus 61 ~P 62 (65)
T PF13432_consen 61 DP 62 (65)
T ss_dssp ST
T ss_pred Cc
Confidence 54
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=0.00016 Score=60.87 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
..+..++..+...|++++|...++++.+.+..+. ...+..++.++.+.|++++|+..++++++..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 102 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN------------- 102 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 3444555555555555555555555554221111 2345555555556666666666666555543
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHhCC
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGD--------------LGSVFELAAVMIKSG 638 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~ 638 (647)
|.+...+..++.++...|+ +++|.++++++.+.+
T Consensus 103 --------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 103 --------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred --------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344555555555555544 455666666665544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.05 E-value=0.0002 Score=56.16 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CCHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-P-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS--LTKVAYTTII 560 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 560 (647)
++..++..+.+.|++++|...+..+...... + ....+..++.++.+.|++++|...++.+...... ....++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777777653110 1 1345556777777777777777777777763211 1134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|...++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777777765
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00032 Score=61.69 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 556 (647)
+-|...|..|..+|...|+.+.|...|.+..+. ..+++..+..+..++..+. ...++..++++++..+ +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 455566666666666666666666666666552 1224555555555544332 3445566666666532 3344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..+...+...|++.+|...|+.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 555566666666666666666666554
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.017 Score=56.74 Aligned_cols=29 Identities=7% Similarity=-0.130 Sum_probs=18.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQET 89 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 89 (647)
|.+..|..++....+.-.++-|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 55666777766666666666666655544
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00023 Score=67.55 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNG 532 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 532 (647)
-...+...|++++|+..++++++.. +.+...|..+..+|...|++++|+..+++++. +.| +...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3455678899999999999999875 56778888999999999999999999999998 445 5888999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHH
Q 006396 533 DLKNADCLLVSLQEHNISLTKVAYT 557 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~~~~~~~~ 557 (647)
++++|...|+++++. .|+.....
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999999999984 45544333
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=0.00013 Score=54.61 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
+..++..+...|++++|...++++....+. +...+..++..+...|+++.|...++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 455666677777777777777777654322 33556666777777777777777777776654 3344566666666677
Q ss_pred cCCHHHHHHHHHHHhh
Q 006396 146 AGSMEEALEFTNDMGR 161 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~ 161 (647)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=1.6e-05 Score=57.37 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNL-EPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|+++.|+.+++++.+... .|+...+..++.+|.+.|++++|..++++ .+.+ +.+......++.++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677888888888877321 12445555577888888888888888877 3221 1223455556788888888888888
Q ss_pred HHHHH
Q 006396 575 FFCQM 579 (647)
Q Consensus 575 ~~~~~ 579 (647)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87753
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.023 Score=55.84 Aligned_cols=206 Identities=17% Similarity=0.040 Sum_probs=108.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCc--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ-GFKL--------NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
.|.+..|..+.......-+++.|...|-+.... |++. +...-. ...-.--|++++|++++-++...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchh---
Confidence 455666666666655555566665555443321 1110 000000 11122347888888888777654
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006396 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKR-ISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIM 349 (647)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (647)
...+..+.+.|++-...++++.--... -..-...+..+...+.....|++|.+.|..-.. ....
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 123455566677766665554321100 001123455566666666667777666654321 1234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
+.++.+..++++-+.+-+.+ +-+....-.+..++.+.|.-++|.+.+-+.. .| ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 55555555555555444443 2355566677777777777777776654332 22 2234556667777
Q ss_pred HHHHHHHHHH
Q 006396 430 QRLLALLQEM 439 (647)
Q Consensus 430 ~~a~~~~~~~ 439 (647)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777666543
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.96 E-value=0.00072 Score=67.15 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 006396 445 GPTHVTYTVVIKGLCK--Q---WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC--------KDLRKAFQLLNQMWL 511 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~ 511 (647)
+.+...|...+++... . ++...|..+|+++++.. +.....+..+..++... +++..+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4556666666666432 2 22556667777766642 22233444433333221 112333333333333
Q ss_pred CC-CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 512 HN-LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 512 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.. ...++..+..+.-.+...|++++|...++++++. .|+...|..++.++...|+.++|.+.++++...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 1223455555555555556666666666666663 3455566666666666666666666666666554
No 165
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00061 Score=59.95 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=64.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCCCHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG---FAEVAKGLFCLMLKYGLHPDAFSYN 137 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 137 (647)
.|...|..|+.+|..+|+++.|...|.++.+..+ +++..+..+..++..+. ...++..+|+++++.. +.|..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 6666777777777777777777777777766532 35556666666554432 3446667777777664 44555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 138 ILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666667777777777777777665
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0046 Score=56.65 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=99.3
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCCcch----
Q 006396 133 AFSYNILI-HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK--GFHLLSQISGAWKVIQKLLIKGSDPDIVT---- 205 (647)
Q Consensus 133 ~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 205 (647)
...|..+- ..+.-.+++++|.+.--..++.. ..+ .+..+++ ++-..++.+.+...|++.+..+ |+...
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~ 242 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA 242 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH
Confidence 34444333 23345666777766665555432 112 2222222 2334566666666666665542 22211
Q ss_pred ---------HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006396 206 ---------YTVLICGYCQIGNVEEGLKLREVMLSQG---FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL 273 (647)
Q Consensus 206 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 273 (647)
+..-..-..+.|++..|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--+........ -+
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HH
Confidence 1112234567899999999999988764 4456667888888888999999999998888764200 11
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 274 VTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
..+..-..++...++|++|++-|++..+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23333345556678899999999888775
No 167
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.92 E-value=0.00049 Score=52.67 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD----AFSYNIL 139 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l 139 (647)
...++.++-..|+.++|+.+|+++...|.... ...+..+...+...|++++|..+++..... .|+ ......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHH
Confidence 44556667777777777777777777665433 235667777777777888887777777765 233 1222223
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
..++...|+.++|.+.+-.... ++...|..-|..|.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3455667777777776655432 23334554444443
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.92 E-value=0.016 Score=52.76 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=152.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 355 KLGNIGEAVQLYRQLIEKRISPSIVT--FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
-.|+++.|.+-|+.|... |.... +..+.-...+.|+.+.|..+-+...... +.-...+...+...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 356666666666666542 11111 1122222234566666666655554431 22234455566666667777777
Q ss_pred HHHHHHHHhCC-CCCCHHH--HHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006396 433 LALLQEMETKA-IGPTHVT--YTVVIKGL---CKQWKLQEAVQLLEDMYVIGVTPDQI-TYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 433 ~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 505 (647)
+++++.-.... +.++..- -..|+.+- .-..+...|...-.+..+ +.||.. .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77666544322 2222221 11111111 112345556655555554 345533 223345678889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 506 LNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE-HNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++.+.+ ..|.+.++..+ .+.+.|+ .+..-++++.. ..++|| ......+..+....|++..|..--+.+...
T Consensus 286 lE~aWK--~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 286 LETAWK--AEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHHHHh--cCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 999998 46666665433 3445554 34444444432 114554 457788889999999999999888877764
Q ss_pred CcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCCCCC
Q 006396 584 FEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG-GDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
.|...+|..|++.-... ||-.+++.++.+..+.--.|+.+
T Consensus 359 ---------------------~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 359 ---------------------APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred ---------------------CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 48888999999887776 99999999999988876666543
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.91 E-value=0.00045 Score=52.89 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAYTTIIKAH 563 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 563 (647)
+..++-..|+.++|..+|++....|+... ...+..+...+...|++++|..++++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455556666666666666666554432 3344455566666666666666666665531 11 122233334455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006396 564 CAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~ 581 (647)
...|+.++|+..+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 556666666665555443
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.91 E-value=0.00046 Score=58.08 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=67.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
....+..++..+...|++++|...|+++....+.+. ...+..++..+.+.|++++|...++++.+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677788888889999999999998876543332 3578888888899999999999999888764 3456666677
Q ss_pred HHHHHhcCCHHHHH
Q 006396 140 IHGLCIAGSMEEAL 153 (647)
Q Consensus 140 ~~~~~~~~~~~~a~ 153 (647)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654444
No 171
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.88 E-value=0.022 Score=53.06 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHH-------HHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNS-------LIYGFCK----NGKVADARRLLDTIKLHGLEP 411 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 411 (647)
..++..++....+.++...|.+.+.-+.-.. |+...-.. +-...+. .-+...-..+|+.+...+ .
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--i 373 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--I 373 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c
Confidence 3466777778888888888888887766542 33222111 1122221 112233344455554432 2
Q ss_pred CHH-HHHHH---HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCC
Q 006396 412 SAV-TYTTF---MNAYCEEGN-IQRLLALLQEMETKAIGPTHVTYTVVIK----GLCK---QWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 412 ~~~-~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~a~~~~~~~~~~~~ 479 (647)
|.. ...-+ ..-+.+.|. -++|+.+++.+.+-. +-|...-+.+.. .|.. .....+-+.+-+-+.+.|+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 221 11112 222444555 788888888887642 223333333222 2211 1223333333333445676
Q ss_pred CCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH
Q 006396 480 TPDQ----ITYNTIIRS--FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 480 ~~~~----~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 553 (647)
+|-. ..-|.+..+ ....|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..++.. +||+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 6532 233444433 3467888888776665555 788999999999999999999999998877 47777
Q ss_pred HHHHH
Q 006396 554 VAYTT 558 (647)
Q Consensus 554 ~~~~~ 558 (647)
.+++.
T Consensus 526 ~~~ds 530 (549)
T PF07079_consen 526 RMRDS 530 (549)
T ss_pred hhHHH
Confidence 77654
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.88 E-value=0.00036 Score=58.51 Aligned_cols=94 Identities=15% Similarity=-0.034 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
...|..++..+...|++++|...|+++....+.+ ...++..+...+...|++++|...++++.+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4566777777888888888888888886543332 23467778888888888888888888887653 33445555666
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 006396 141 HGLC-------IAGSMEEALEFTN 157 (647)
Q Consensus 141 ~~~~-------~~~~~~~a~~~~~ 157 (647)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5665 5556554444433
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00027 Score=64.56 Aligned_cols=128 Identities=13% Similarity=-0.009 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI-AGSMEEALEFTNDMGRHGVEPDAITYSILAKGF 178 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (647)
+|..++....+.+..+.|+.+|.++.+.+ ..+..+|......-.. .++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555555555555332 2223333333333222 33444455555555544 344455555555555
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 179 HLLSQISGAWKVIQKLLIKGSDPDI----VTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
...++.+.|..+|++.+.. .+.. ..|...+..-.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 2445555555555555555555555544
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.0003 Score=64.23 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK-CKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (647)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|.++|+..++. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 456677777777777888888888887542 3445555555555333 46666688888887774 34567777777788
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTK---VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...|+.+.|..+|++.... ++++. ..|..++..-.+.|+.+.+..+.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888764 33333 377777777777788888888888777653
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00044 Score=58.03 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 499 LRKAFQLLNQMWL-HNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 499 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
+..+...+..+.+ .+..-....+..++..+...|++++|...++++......+ ...++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432 2212235667777888888899999999999988642222 234788888999999999999999
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHH-------cCCCHHHHHHHHHH
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFH-------QGGDLGSVFELAAV 633 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 633 (647)
+++++... |.....+..++.++. ..|++++|...+++
T Consensus 95 ~~~Al~~~---------------------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN---------------------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC---------------------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99998765 445566666666666 78887755544443
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.026 Score=51.54 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=88.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHH--HHHHHhcCChhHHHHHHHHhhcCCCCcCHHh--HHHHHHHHHhcCChh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIV--IDGLCQQSRLQDAILFLQETAGKEFGPSVVS--LNAIMSRYCKLGFAE 115 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 115 (647)
..|+-..|++.-.+.... ...|.+....+ .+...-.|++++|.+-|+.|.. .|.... +..+.-...+.|..+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 566666666665544310 11233322222 2334456677777777777764 122221 222222233556666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHH--HHHHHHH---hcCChhhHHH
Q 006396 116 VAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG-VEPDAITYS--ILAKGFH---LLSQISGAWK 189 (647)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~--~l~~~~~---~~~~~~~a~~ 189 (647)
.|.++-+.....- +.-...+...+...+..|+++.|+++.+.-++.. +.+++.--. .|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666666665542 2234456666666667777777777666554431 223322211 1221111 1223334444
Q ss_pred HHHHHHhcCCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 190 VIQKLLIKGSDPDIVT-YTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
.-.+..+ ..||... -..-..++.+.|+..++-.+++.+-+..
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 3333332 2344322 1222345566666666666666666653
No 177
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.80 E-value=0.03 Score=52.13 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILI 525 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 525 (647)
...|...+..-.+..-.+.|..+|.++.+.+ +.++..++++++..++ .|+...|.++|+--... -|| ...-+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3556677777777777888999999988887 5677778888887665 48888899998887763 344 33334556
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..+...++-..|..+|++..++ +..+ ...|..++.--..-|+...+..+=+++...
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 6677788888999999876653 3333 457888888778888888777776666543
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.79 E-value=0.00045 Score=61.73 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKS 594 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 594 (647)
..|..-...+.+.|++++|...|+.+++. .|+ ..++..++.+|...|++++|+..|+++++.. |
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P-------- 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--P-------- 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C--------
Confidence 33444444445668888888888888874 233 2477888888888888888888888888754 0
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 595 FFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
+-+....++..++.++...|+.++|.++++++++..|..
T Consensus 212 --------~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 212 --------KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred --------CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 012346777778888888888888888888888765544
No 179
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.78 E-value=5.1e-05 Score=43.80 Aligned_cols=31 Identities=45% Similarity=0.929 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006396 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKP 271 (647)
Q Consensus 241 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 271 (647)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3334444444444444444444444333333
No 180
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.78 E-value=4.9e-05 Score=43.88 Aligned_cols=33 Identities=58% Similarity=0.992 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006396 135 SYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD 167 (647)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (647)
+|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0028 Score=63.03 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 006396 408 GLEPSAVTYTTFMNAYCE--EG---NIQRLLALLQEMETKAIGPT-HVTYTVVIKGLCKQ--------WKLQEAVQLLED 473 (647)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~ 473 (647)
..+.+...|...+++... .+ +...|..+|++..+. .|+ ...+..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346778888888887543 32 377899999999987 455 44555554444322 122344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 006396 474 MYVI-GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT 552 (647)
Q Consensus 474 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 552 (647)
.... ..+.+...+..+.......|++++|...+++++. +.|+...|..++..+...|+.++|.+.++++.. +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 4332 2344567777777777778999999999999999 557889999999999999999999999999998 4666
Q ss_pred HHHHHH
Q 006396 553 KVAYTT 558 (647)
Q Consensus 553 ~~~~~~ 558 (647)
..+|..
T Consensus 486 ~pt~~~ 491 (517)
T PRK10153 486 ENTLYW 491 (517)
T ss_pred CchHHH
Confidence 666543
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.75 E-value=6.5e-05 Score=51.65 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=50.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
...|++++|+..|+++.... |.+..++..++.+|.+.|++++|.++++++...++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN---------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT---------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56899999999999999987 889999999999999999999999999999987654
No 183
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.74 E-value=6.2e-05 Score=43.03 Aligned_cols=30 Identities=43% Similarity=0.643 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 241 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444444433
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00015 Score=49.16 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++..+...|++++|...|+++++.. +-+...+..++.++...|++++|+.+|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455666777777777777777643 3344566777777777777777777777776654
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00052 Score=65.08 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=71.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 340 IQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK--RISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
+.+......++..+....+.+.+..++.+.... ....-+.|..++++.|...|..+.+..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566665666666666666665543 111223444566666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (647)
.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666655544455554444444433
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.00097 Score=61.31 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=100.4
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHhcCChhHHHHH
Q 006396 11 MVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVS----ETPR-NVYTNSIVIDGLCQQSRLQDAILF 85 (647)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 85 (647)
++++|...|+++-.. ....++++.|...|.++... +.+. -...|...+.++. .+++++|+..
T Consensus 30 ~~e~Aa~~y~~Aa~~------------fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~ 96 (282)
T PF14938_consen 30 DYEEAADLYEKAANC------------FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHHHH------------HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHH------------HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHH
Confidence 566777666665432 12345666666666554321 1101 1123444444443 3477788877
Q ss_pred HHHhhc----CCCCcC--HHhHHHHHHHHHhc-CChhhHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHH
Q 006396 86 LQETAG----KEFGPS--VVSLNAIMSRYCKL-GFAEVAKGLFCLMLKY----GLHPD--AFSYNILIHGLCIAGSMEEA 152 (647)
Q Consensus 86 ~~~~~~----~~~~~~--~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a 152 (647)
++++.. .| .++ ...+..++..|... |+++.|.+.|+++... + .+. ...+..+...+.+.|++++|
T Consensus 97 ~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 97 YEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 777643 22 122 33677788888887 8999999988887753 2 211 33566777888899999999
Q ss_pred HHHHHHHhhCCCCC-----Chh-hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 153 LEFTNDMGRHGVEP-----DAI-TYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 153 ~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.++|+++....... ++. .+...+-++...|+...|.+.+++....
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999887643221 121 2233444566788899999999988755
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.71 E-value=0.00015 Score=50.65 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
...|...+++++|++++++++..+ |.++..|...+.++.+.|++++|.+.++++++.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD---------------------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457889999999999999999988 88899999999999999999999999999999776
Q ss_pred CC
Q 006396 640 LP 641 (647)
Q Consensus 640 ~~ 641 (647)
.+
T Consensus 61 ~~ 62 (73)
T PF13371_consen 61 DD 62 (73)
T ss_pred Cc
Confidence 44
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.71 E-value=0.005 Score=54.75 Aligned_cols=66 Identities=11% Similarity=-0.036 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH--hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV--SLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
++..+...+..+...|++++|+..|+.+....+.+... ....++.++.+.++++.|...+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33344455556667777777777777776654332211 2345566667777777777777777765
No 189
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=8.8e-05 Score=42.39 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006396 415 TYTTFMNAYCEEGNIQRLLALLQEMETKAIGP 446 (647)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 446 (647)
+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.68 E-value=0.0011 Score=62.90 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK--AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
+.+......+++.+....+.+.+..++-..... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666666666666666665543 111112334466677777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV 530 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (647)
.++..+.+.|++..|.++...|...+.-.++.++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777766666654444444444444444433
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.67 E-value=0.00024 Score=48.93 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG-DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 583 (647)
++..|..++..+...|++++|+..|.++++.+ +.+...|..++.++...| ++++|+..++++++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45677777788888888888888888888753 334557778888888888 6888888888877654
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=0.00016 Score=49.69 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=34.2
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...|++++|.++|+++.+.. +.+...+..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566777777777766642 3355566666777777777777777777666654
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.01 Score=52.74 Aligned_cols=66 Identities=14% Similarity=-0.096 Sum_probs=48.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HH---HHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF-SY---NILIHGLCIAGSMEEALEFTNDMGRHGV 164 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (647)
+...+...+..+...|++++|...|+.+.... |+.. .. -.++.++.+.+++++|...+++..+..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44456566677778899999999999988763 3322 22 3456777888999999999999887643
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.0044 Score=57.03 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhhc-CChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHHH
Q 006396 498 DLRKAFQLLNQMWL----HNLEPT--SATYNILIDGLCVN-GDLKNADCLLVSLQEH----NISLT--KVAYTTIIKAHC 564 (647)
Q Consensus 498 ~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 564 (647)
++++|...+++... .| .|+ ..++..+...|... |++++|.+.|+++.+. + .+. ..++..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 66666666665553 22 222 34566677788888 9999999999998852 2 221 236678889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ-EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.|++++|+++|+++.......+.. ..+. ..+...+-++...||...|.+.+++.....|
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~---------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLL---------------KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTT---------------GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HhCCHHHHHHHHHHHHHHhhccccc---------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999998754211110 1122 2344555677778999999999998876554
No 195
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.62 E-value=0.059 Score=50.43 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHH---cCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH--HH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTF----MNAYCE---EGNIQRLLALLQEMETKAIGPTHV----TYTVVIKG--LC 459 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~ 459 (647)
.-++|..+++.+.+-. +-|...-|.+ =..|.. ...+.+-+.+-+-+.+.|++|-.+ .-|.+.++ +.
T Consensus 395 ~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 CDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred ccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 3677777777766531 2233222222 122322 233445555555566677766433 33334333 45
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNI 523 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 523 (647)
..|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 67899988877777766 578999999999888899999999999987 4677776654
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.04 Score=47.40 Aligned_cols=132 Identities=12% Similarity=0.013 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHH-----H
Q 006396 170 TYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSV-----L 244 (647)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 244 (647)
..++++..+.-.+++.-....+.+.++...+.++.....+.+.-.+.||.+.|...|+...+..-+.+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33444444444555555555555555443333444444455555555555555555554443322222222222 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 245 LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 245 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
...+.-.+++..|...+.++...+. .|...-|.-.-+..-.|+...|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2223334455555555555444321 12222222222223335555555555555543
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0011 Score=52.92 Aligned_cols=91 Identities=11% Similarity=-0.079 Sum_probs=69.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
..-+...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|...|..+...+ ..|+..+...+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 334456788999999888887743 2356777888888888888999988888877643 34555677788888888999
Q ss_pred HHHHHHHHHHHHc
Q 006396 570 HKAMTFFCQMVEK 582 (647)
Q Consensus 570 ~~A~~~~~~~~~~ 582 (647)
+.|+..|+.++..
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9998888888763
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.52 E-value=0.11 Score=50.76 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 006396 238 VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317 (647)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (647)
...|...+..-...|+++.+.-+|+...-. +..-...|-..++.....|+.+-+..++....+-.++..+.+...-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 346666677777778888777777776531 1122334555555555557777777666665554333222222222222
Q ss_pred HhhcCCHHHHHHHHHHHHHc
Q 006396 318 LCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~ 337 (647)
.-..|++..|..+++.+...
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh
Confidence 33345666666666666554
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0019 Score=47.41 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 385 IYGFCKNGKVADARRLLDTIKLHGL-EPSAVTYTTFMNAYCEEG--------NIQRLLALLQEMETKAIGPTHVTYTVVI 455 (647)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (647)
|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. ..-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666665554432 1233455555666555666666666665
Q ss_pred HHHH
Q 006396 456 KGLC 459 (647)
Q Consensus 456 ~~~~ 459 (647)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.48 E-value=0.0021 Score=47.18 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCChhhHH
Q 006396 102 NAIMSRYCKLGFAEVAKGLFCLMLKYGL-HPDAFSYNILIHGLCIAG--------SMEEALEFTNDMGRHGVEPDAITYS 172 (647)
Q Consensus 102 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (647)
...+..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+..+.. +.-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3444455555677777777777777666 566667776666655432 1223445555555555555555555
Q ss_pred HHHHHHH
Q 006396 173 ILAKGFH 179 (647)
Q Consensus 173 ~l~~~~~ 179 (647)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
No 201
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.028 Score=48.74 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
+..+...+..+...|++.+|+..|+.+....+.. .......++.++.+.|+++.|...+++.++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555556666666666666666665543221 1234555566666666666666666666554
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.016 Score=49.74 Aligned_cols=134 Identities=10% Similarity=-0.013 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH-----NLEPTSATYNI 523 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~ 523 (647)
...+.++..+...|.+.-...++.+.++...+.++.....+++.-.+.||.+.|..+|++..+. ++.-+..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3445666777778888889999999998766778888899999999999999999999977653 22333444444
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
....|.-++++.+|...+.++...+ +.++...+.-+-+..-.|+..+|++.++.++...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5556667789999999999998764 4456666776777777899999999999998865
No 203
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.34 E-value=0.00035 Score=38.78 Aligned_cols=28 Identities=36% Similarity=0.778 Sum_probs=13.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 275 TYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554443
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.32 E-value=0.00039 Score=38.61 Aligned_cols=29 Identities=41% Similarity=0.755 Sum_probs=15.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006396 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVG 268 (647)
Q Consensus 240 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 268 (647)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.32 E-value=0.0045 Score=55.47 Aligned_cols=87 Identities=15% Similarity=-0.017 Sum_probs=40.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcC
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPD----AFSYNILIHGLCIAGSMEEALEFTNDMGRHG--VEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 182 (647)
.+.|++++|...|+.+++. .|+ +.++..+...|...|++++|...|+.+.+.- .+.....+..+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445555555555555544 222 1244444555555555555555555554321 0112233333344444555
Q ss_pred ChhhHHHHHHHHHhc
Q 006396 183 QISGAWKVIQKLLIK 197 (647)
Q Consensus 183 ~~~~a~~~~~~~~~~ 197 (647)
+.++|.++++.+++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555544
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.0042 Score=56.71 Aligned_cols=138 Identities=11% Similarity=0.053 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQE----HN-ISLTK 553 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~ 553 (647)
..|..|.+.|.-.|+++.|+..-+.-+. .|-+. ....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566677777778899998877654332 33222 246677888999999999999999887653 22 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
....++..+|.-..++++|+.++.+-+...- . -.+..-...++..|+.++...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAq---------e------L~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ---------E------LEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---------H------HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677888999999999999999887553210 0 001234567788899999999999999888777
Q ss_pred HHh
Q 006396 634 MIK 636 (647)
Q Consensus 634 ~~~ 636 (647)
.++
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 654
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0022 Score=44.69 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|.+.+++++|.+.++++...+ |.+...|...+.++...|++++|...++++++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45566666677777766666642 3344466666666666777777777777666655
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.27 E-value=0.011 Score=54.10 Aligned_cols=133 Identities=10% Similarity=-0.031 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMY----VIGVT-PDQITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNL-EPTSA 519 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~p~~~ 519 (647)
.|..+...|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667788999887665433 22311 2335677888999999999999999887653 221 22355
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQE----HN-ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+...|...|.-..++++|+.++.+-+. .+ ..-....+.++..++...|..++|+.+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666788888888899999998876542 11 1223458889999999999999999998877653
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.25 E-value=0.11 Score=45.03 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKA--IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC--K 495 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 495 (647)
...+...|++.+|...|+.+.... .+-.....-.++.++.+.|+++.|...+++.++....-....+...+.+.+ .
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 344556666666666666666531 111122344555666666666666666666665421111111111111111 0
Q ss_pred -----------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 496 -----------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 496 -----------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+...+|... +..++.-|-.+.-..+|...+..+.+. + ...-..++..|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHHHH
Confidence 1112223333 334444444455555665555555431 0 112234677889
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC---HHHHHHHHHHHHcCCCHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD---QEICEVMLIAFHQGGDLGSVF 628 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 628 (647)
+.|.+..|...++.+++.- |.. ..+...++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~y---------------------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENY---------------------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHS---------------------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHC---------------------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999998864 322 466778889999999888554
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.07 Score=49.91 Aligned_cols=168 Identities=14% Similarity=0.024 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIG---VTPDQITYNTIIRSFCK---CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLC 529 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 529 (647)
-+|....+++..+++.+.+.... +.....+-.....++.+ .|+.++|++++..++...-.+++.++..+++.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34555555666666665555421 11111222223333444 5666666666666444334555666666655543
Q ss_pred h---------cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCcccchhhhhHHHHhh
Q 006396 530 V---------NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV-EKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 530 ~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 599 (647)
. ....++|...|.+.-+. .|+...=..++..+...|...+...-+++.. .. -...
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l-------------~~ll 293 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKL-------------SSLL 293 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHH-------------HHHH
Confidence 2 12367788888777763 3443322233333333443222211111111 00 0011
Q ss_pred hhCC-CC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 600 LSNG-FP--PDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 600 ~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.+.| .. .+--.+..++.+..-.|+.++|.+.+++|.+..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 1111 12 334455678899999999999999999999875
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.24 E-value=0.00081 Score=47.68 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
.++..++.+|...|++++|+..++++++.. ....+ -.|+ ..++..++.++...|++++|++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~--------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGD--------------DHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTT--------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCC--------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 478889999999999999999999998641 10000 0122 6788999999999999999999999
Q ss_pred HHHh
Q 006396 633 VMIK 636 (647)
Q Consensus 633 ~~~~ 636 (647)
++.+
T Consensus 71 ~al~ 74 (78)
T PF13424_consen 71 KALD 74 (78)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.007 Score=55.70 Aligned_cols=98 Identities=14% Similarity=-0.034 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
..+++.+..+|.+.+++..|+...++.++.+ ++|...+..-..++...|+++.|+..|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-------------- 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-------------- 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------------
Confidence 4567778888999999999999999999865 6677788888999999999999999999999887
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHhC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGS-VFELAAVMIKS 637 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 637 (647)
|.|..+-..+..+--+....++ ..++|..|...
T Consensus 322 -------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 322 -------PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777777766666555444 47888888754
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=97.22 E-value=0.012 Score=55.74 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 006396 463 KLQEAVQLLEDMYVI-GVTPD-QITYNTIIRSFCK---------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN 531 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 531 (647)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.+..++.++.+ +.|+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788899998832 23444 4455555554432 234667888888888853 44788888899888989
Q ss_pred CChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 532 GDLKNADCLLVSLQEHNISLTK-VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
|+++.|..+|+++... .||. .+|......+..+|+.++|.+.++++++.. +......+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-------------------P~~~~~~~ 410 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-------------------PRRRKAVV 410 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------------------chhhHHHH
Confidence 9999999999999984 5654 488888888999999999999999999876 22333566
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 611 CEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
....+..|+.++ .++|.+++-+-.+
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 666777888774 5788888766443
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.19 E-value=0.14 Score=48.03 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.+++.++.-.|++++|.+..++|.+..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 45677888888899999999999988764
No 215
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.18 E-value=0.28 Score=48.12 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 421 (647)
+...|...+......|+.+...-.|++..-. +..-...|-..+.-....|+.+-+..++....+-.++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777777788888888888888877542 111233444444444555888888877766655433322222211122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHH-----H
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGPTHVT-YTVVIKGLCKQWKLQEAVQ---LLEDMYVIGVTPDQITYNTIIR-----S 492 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~-----~ 492 (647)
..-..|++..|..+++.+.+.- |+... -..-+....+.|+.+.+.. ++..... | ..+......+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence 2334678888888888887753 44332 2223344456677776663 2222222 1 112222222221 1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457788888888888774 3455666777776665554
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.12 E-value=0.0081 Score=48.98 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
.+...++..+...|++++|....++++... |-+...|..++.+|...|+..+|.++|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---------------------PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 356677888999999999999999999988 88999999999999999999999999988
Q ss_pred HH-----hCCCCCCCC
Q 006396 634 MI-----KSGLLPDKF 644 (647)
Q Consensus 634 ~~-----~~~~~~~~~ 644 (647)
+. +.|+.|...
T Consensus 122 ~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 122 YRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHS----HH
T ss_pred HHHHHHHHhCcCcCHH
Confidence 74 467777653
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=97.10 E-value=0.048 Score=51.81 Aligned_cols=148 Identities=12% Similarity=0.122 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 428 NIQRLLALLQEMETK-AIGPT-HVTYTVVIKGLCK---------QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..+.|..+|.+.... .+.|+ ...|..+..++.. .....+|.++.++..+.+ +.|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 457788899988832 23444 4455555544432 234567788888888876 77888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV---AYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 572 (647)
++++.|...|++... +.|| ...|......+.-.|+.++|.+.+++..+ +.|... ..-..+..|+. ...+.|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~-~~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVP-NPLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcC-Cchhhh
Confidence 889999999999998 6676 77888888888899999999999999887 455433 33334445555 456677
Q ss_pred HHHHHHHHH
Q 006396 573 MTFFCQMVE 581 (647)
Q Consensus 573 ~~~~~~~~~ 581 (647)
+.+|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 777665443
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.10 E-value=0.013 Score=49.15 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN 218 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (647)
+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 4455666666666666666666666666655443
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.0089 Score=52.16 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
.|+.-+ .+.+.|++.+|...|...++.. +- .+..+.+|+.+++..|++++|..+|..+.+.. +
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P----------- 209 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-P----------- 209 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-C-----------
Confidence 454443 3456677888888888888742 22 23467778888888888888888888887643 0
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.-+.-++.+..|+.+..+.|+.++|..+|+.+.+.=|.
T Consensus 210 ------~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 210 ------KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ------CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 01334678888888888888888888888888775443
No 220
>PRK15331 chaperone protein SicA; Provisional
Probab=97.08 E-value=0.037 Score=44.46 Aligned_cols=85 Identities=11% Similarity=-0.117 Sum_probs=59.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|++++|..+|+-+...++ .++.-|..|+.++-..+++++|+..|..+...+. .|+........++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 67777777777776665444 5566677777777777777777777777655443 244456667777777777777777
Q ss_pred HHHHHHh
Q 006396 120 LFCLMLK 126 (647)
Q Consensus 120 ~~~~~~~ 126 (647)
.|+.+..
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7777776
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.029 Score=47.12 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 445 GPTHVTYTVVIKGLCK-----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA 519 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 519 (647)
..+..+|..+++.+.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- -..+|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------ 109 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------ 109 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH------------
Confidence 3466777777777653 35566666667777777777777777777776554 2211 111111
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.+..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 110 ---~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 110 ---AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111 1234568899999999999999999999998885544
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.017 Score=50.54 Aligned_cols=90 Identities=16% Similarity=-0.016 Sum_probs=41.0
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL--HPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 148 (647)
+.+.|++.+|...|...++..+.- ....+.-+..++...|+++.|..+|..+.+... +.-+.....|..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 334445555555555554443221 112344455555555555555555555544310 0112344444444555555
Q ss_pred HHHHHHHHHHHhhC
Q 006396 149 MEEALEFTNDMGRH 162 (647)
Q Consensus 149 ~~~a~~~~~~~~~~ 162 (647)
.++|..+|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.98 E-value=0.0049 Score=58.14 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV----AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...++.++.+|...|++++|+..|++.++ +.|+.. +|..++.+|...|+.++|+..++++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 588899999999999999999999999998 467643 58999999999999999999999999864
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.2 Score=44.44 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=72.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..+++.+|..+|+.+....+ .+..+-..++.++...|+++.|..++..+..............-+..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 55666666666666665443 34555666666666777777666666665443211111122233444555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG-VEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 182 (647)
+-++.-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+...|
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 54444443 3355555556666666666666665554443321 1123344444554444444
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.94 E-value=0.015 Score=43.82 Aligned_cols=90 Identities=23% Similarity=0.186 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcC
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK---VAYTTIIKAHCAEG 567 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 567 (647)
+....|+++.|++.|.+.+. +-| ....||.-..++.-.|+.++|++-++++++..-+... ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666665 333 4666666666666666666666666666653111111 13333444555566
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666666665
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.92 E-value=0.13 Score=41.76 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...++..+...|++++|.++.+++.... |.+...|..++.++...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344566677778888888888888888753 45666888888888888888888888887753
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.91 E-value=0.0049 Score=43.63 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEH--NISL---T-KVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..+++.+..+|...|++++|+..+++.++. ...+ + ..++..++.++...|++++|+++++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777777777777777642 1111 1 33667777888888888888888887765
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.89 E-value=0.0034 Score=38.21 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
.++..+..+|...|++++|++.++++++.. |.++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~---------------------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD---------------------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------------cCCHHHHHHhhh
Confidence 467889999999999999999999999987 888888887764
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.87 E-value=0.41 Score=45.01 Aligned_cols=440 Identities=12% Similarity=0.027 Sum_probs=205.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006396 49 DLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128 (647)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 128 (647)
++=+++. .+| .|..+|..|+.-+..+|..++.+++++++..- ++--+.+|...+++-....++..+..+|.+.+..
T Consensus 30 rLRerIk-dNP-tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 30 RLRERIK-DNP-TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHhh-cCc-hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 4444443 233 67788999999999999999999999998763 2223457888888888888999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcC-----C-HHHHHHHHHHHhh-CCCCC-ChhhHHHHHHHHH---------hcCChhhHHHHH
Q 006396 129 LHPDAFSYNILIHGLCIAG-----S-MEEALEFTNDMGR-HGVEP-DAITYSILAKGFH---------LLSQISGAWKVI 191 (647)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~-----~-~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~ 191 (647)
..+...|...+.-..+.+ + -....+.|+-... .+++| ....|+.....+. .+.+.+.....+
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 345666666665444332 1 1112233333332 12333 3344555444332 223345566666
Q ss_pred HHHHhcCCCCCcch------HHHHHHHHHh-------cCChHHHHHHHHHHHh--CCCCc----CcccHHHHHH------
Q 006396 192 QKLLIKGSDPDIVT------YTVLICGYCQ-------IGNVEEGLKLREVMLS--QGFKL----NVIAYSVLLS------ 246 (647)
Q Consensus 192 ~~~~~~~~~~~~~~------~~~l~~~~~~-------~~~~~~a~~~~~~~~~--~~~~~----~~~~~~~l~~------ 246 (647)
.+++...+..-... |..-+..... ..-+-.|.+.++++.. .|+.. +..+++.+.+
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 66665422100111 1111111100 1113445555555533 22211 1112222111
Q ss_pred -----HHHhcC-----C-h-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 006396 247 -----SMCKSG-----R-I-DEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAI 314 (647)
Q Consensus 247 -----~~~~~g-----~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (647)
--...| + . ....-++++.... +.-....|..--..+...++-+.|+......... .|. ....+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 000000 0 0 0000011111110 0011112222222223334444444444332211 122 11112
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhc
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK---LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKN 391 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (647)
...+...++-+.....|+...+. ...--..+..-.. -|+++...+++-+-.. .-..+|...+....+.
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRK 410 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHH
Confidence 22222333333333333332210 0000000000000 1122212221111111 1234455566666666
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 006396 392 GKVADARRLLDTIKLHG-LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTY-TVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~ 469 (647)
.-.+.|..+|-+..+.+ +.+++..+++++..++ .|++..|..+|+--..+ .||...| .-.+.-+...++-+.|..
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 66777777777777766 4566777777776553 46677777777765444 2343333 334444556677777777
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 470 LLEDMYVIGVTPD--QITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 470 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+|+..+.. +..+ ...|..++..-..-|++..+..+=+++..
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77755442 1222 45677777766777777777666666665
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.2 Score=49.15 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--------
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQI-------- 484 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------- 484 (647)
..+...+...+.+...+.-|-++|..|-.. ..+++.+...+++.+|..+-++..+. .||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344444444455566667777777766432 24556667777777777776665542 23321
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 485 ---TYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 485 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
-+...-.+|.+.|+-.+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123334566777777888887777664
No 231
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.038 Score=51.10 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
.++.++.++.+.+++..|+.....++..++ +|...+..-..++...|+++.|+..|+++++.. +.|-.+-+.++..-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 466777888888888888888888888763 477788888888888888888888888888874 334444445554444
Q ss_pred hcCCHH-HHHHHHHHHhh
Q 006396 145 IAGSME-EALEFTNDMGR 161 (647)
Q Consensus 145 ~~~~~~-~a~~~~~~~~~ 161 (647)
+..++. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 433333 33567777754
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.81 E-value=0.029 Score=42.35 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=53.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH---hHHHHHHHHHhcCChhh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV---SLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~ 116 (647)
..|+++.|++.|.+.+.--| ..+++|+.-.+++.-+|+.++|++-+.++++..-..... .|..-...|...|+-+.
T Consensus 55 E~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred hccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 56677777777776665332 556667777777777777777777666665532111222 34444455666677777
Q ss_pred HHHHHHHHHhCC
Q 006396 117 AKGLFCLMLKYG 128 (647)
Q Consensus 117 a~~~~~~~~~~~ 128 (647)
|..=|+.+.+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 776666666655
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.72 E-value=0.35 Score=42.17 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCC-c-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFG-P-SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
+...++.|++++|...|+.+....+. | ...+...++-++.+.++++.|+..+++..+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33345555555555555555443221 0 1223444444455555555555555555543
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.70 E-value=0.036 Score=52.51 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=56.5
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSV--VSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.++..|+.++.+|...|++++|+..|++++...+.... .+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999886544221 35899999999999999999999999875
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.14 Score=50.86 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ------ITYNTIIRSFCK----CKDLRKAFQLLNQMWLHNLEPTSATY 521 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~ 521 (647)
..++....-.|+-+.+++.+....+.+---.+ ..|..++..++. ..+.+.|.++++.+.+ .-|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 35556666678888888887776653211111 123333333332 4578889999999988 46776666
Q ss_pred HH-HHHHHhhcCChhhHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 522 NI-LIDGLCVNGDLKNADCLLVSLQEH--NI-SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 522 ~~-l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
.. -.+.+...|+.++|.+.++++... .. +.....+..++.++...++|++|.+.|.++.+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------------- 335 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------------- 335 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------------
Confidence 44 356677889999999999987641 11 1123366778888999999999999999999865
Q ss_pred hhhhCCCCCCHHHHH-HHHHHHHcCCCH-------HHHHHHHHHHHhC
Q 006396 598 MMLSNGFPPDQEICE-VMLIAFHQGGDL-------GSVFELAAVMIKS 637 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~~ 637 (647)
.-....|. ..+-++...|+. ++|.+.++++...
T Consensus 336 -------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 -------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred -------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 22334444 344555667888 8888888887643
No 236
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=1 Score=46.18 Aligned_cols=53 Identities=8% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMW 510 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 510 (647)
++..+.+..+++.+..+.+..- +-++..|..++..+.+.+.++...+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----ccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3444445555555555544432 2255566666666666665555544444443
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.39 Score=42.73 Aligned_cols=153 Identities=16% Similarity=0.064 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
.-..-.......|++.+|..+|..+.+.. +.+...-..++.+|...|+.+.|..++..+...-..........-+..+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34444555677888999999998888764 44556677788888889999999999888754311111111122344455
Q ss_pred hcCChhhHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcCcccHHHHHHHHHhcCChhH
Q 006396 180 LLSQISGAWKVIQKLLIKGSDP-DIVTYTVLICGYCQIGNVEEGLKLREVMLSQGF-KLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
+.....+...+-++... .| |...-..+...+...|+.+.|.+.+-.+.+.+. ..+...-..++..+.-.|.-+.
T Consensus 215 qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 215 QAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555555555443 34 455666777788888888888877666665531 1244556666666666554333
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.49 E-value=0.6 Score=41.97 Aligned_cols=165 Identities=16% Similarity=0.056 Sum_probs=65.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLH-GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK-G 457 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 457 (647)
........+...++...+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3344444444555555555554444431 112233334444444444444555555555444432111 111111111 3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGV--TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDL 534 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 534 (647)
+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 4444555555555544433110 0111222222222333444444444444444421 11 133344444444444444
Q ss_pred hhHHHHHHHHHH
Q 006396 535 KNADCLLVSLQE 546 (647)
Q Consensus 535 ~~A~~~~~~~~~ 546 (647)
+.|...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.35 Score=47.60 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=77.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHh-----HHHHHHHHHhcCChhhHHHHHHHHHhC--CC-CCCHHHHHHH
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVS-----LNAIMSRYCKLGFAEVAKGLFCLMLKY--GL-HPDAFSYNIL 139 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~~~~~l 139 (647)
.++..+.-+|++.+|..+|.+.=..+. ..+. ....+.-+...|..++-..+.++-... ++ .|. +.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aA 709 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AA 709 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HH
Confidence 455666777777777777765321100 0111 122333445555555555444432221 00 121 12
Q ss_pred HHHHHhcCCHHHHHHHHHH------HhhCC---CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHH
Q 006396 140 IHGLCIAGSMEEALEFTND------MGRHG---VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLI 210 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (647)
..++...|+..+|..+.-+ +.+.+ ...+..+...+..-+.+...+.-|-++|.+|-. ..+++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 2333344555554433211 00000 122334444444445555566666666666532 23455
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHH
Q 006396 211 CGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL 258 (647)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 258 (647)
..+...+++++|..+-+...+. . ..+|.-..+-++...++++|.
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~--~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--K--DDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--c--ccccchHHHHhhhhhhHHHHH
Confidence 5666667777776666554433 2 223333344444444444443
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.41 Score=41.09 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCcCcccHH
Q 006396 171 YSILAKGFHLLSQISGAWKVIQKLLIK----GSDPDI-VTYTVLICGYCQIGNVEEGLKLREVMLSQG---FKLNVIAYS 242 (647)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 242 (647)
+....+++.+...+++|-..|.+-... ...++. ..+...|-.+....|+..|.+.++...+.+ -..+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 445556666666666665554443211 111221 235555566667778888888887755443 122445666
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 006396 243 VLLSSMCKSGRIDEALGLLY 262 (647)
Q Consensus 243 ~l~~~~~~~g~~~~a~~~~~ 262 (647)
.|+.+| ..|+.+++..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 677666 4566666555543
No 241
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.97 Score=43.39 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC-IAGSMEEALEFTNDMG 160 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 160 (647)
-..+|+.+... +..|+..|...+..+.+.+.+.+...+|.+|++.+ +.++..|-.-..... ...+.+.|..+|....
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 33455555543 33477777777777777777777777887777764 334444433333322 2334777777777776
Q ss_pred hCCCCCChhhHHHHH
Q 006396 161 RHGVEPDAITYSILA 175 (647)
Q Consensus 161 ~~~~~~~~~~~~~l~ 175 (647)
+.+ +.++..|...+
T Consensus 168 R~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFN-PDSPKLWKEYF 181 (568)
T ss_pred hcC-CCChHHHHHHH
Confidence 653 22444444433
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.40 E-value=0.53 Score=45.23 Aligned_cols=145 Identities=13% Similarity=0.038 Sum_probs=79.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 424 CEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAF 503 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 503 (647)
-+..+++.-++.-++..+. .|+..+...++ +--......++.+++++..+.|- .. +.+.......-
T Consensus 179 WRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~~~~~~g 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQFLQHHG 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hchhhhhhccc
Confidence 3445555555555555543 34433222221 22234557888888888776541 00 00000001111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 504 QLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..++........|-..+-..+..++.+.|+.++|++.++++.+.. +. +..+...++.++...+.+.++..++.+--+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111222222223334444567777888899999999988888642 22 334777888888888999988888888654
Q ss_pred cC
Q 006396 582 KG 583 (647)
Q Consensus 582 ~~ 583 (647)
..
T Consensus 324 i~ 325 (539)
T PF04184_consen 324 IS 325 (539)
T ss_pred cc
Confidence 43
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.3 Score=41.84 Aligned_cols=206 Identities=12% Similarity=-0.034 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..|..-..+|....++++|...+.++.+.. ..+. .+.... ..++.|.-+.+++.+. +--...|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennr-slfhAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNR-SLFHAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhcc-cHHHHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 345555667888888888888877776321 1122 222222 2234444444444432 11223455556677
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCC---cchHHHHHHHHHhcCC
Q 006396 144 CIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG--SDPD---IVTYTVLICGYCQIGN 218 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~ 218 (647)
..+|.++.|-..+++.-+. ..+.+++.|++++++....= -..+ ...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7778877777666665331 12233444555544433210 0001 1123333445556666
Q ss_pred hHHHHHHHHHHHhCC--CC--cC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHccCCHH
Q 006396 219 VEEGLKLREVMLSQG--FK--LN-VIAYSVLLSSMCKSGRIDEALGLLYEMEAVG---LKPDLVTYSILIRGLCKQDKVH 290 (647)
Q Consensus 219 ~~~a~~~~~~~~~~~--~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 290 (647)
+++|-..+.+-.... +. ++ -..|...|-.+.-..++..|...+++--+.+ -+.+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 655554443322110 01 11 1234455556666677777777777743321 1224455666666543 45555
Q ss_pred HHHHHH
Q 006396 291 KAIQLY 296 (647)
Q Consensus 291 ~a~~~~ 296 (647)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555444
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.33 E-value=0.36 Score=40.56 Aligned_cols=87 Identities=9% Similarity=-0.056 Sum_probs=54.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|-.+.|+--|.+.+...| .-+..++.++-.+...|+++.|.+.|+...+.++..+-...+.-+. +.-.|+++-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 44555666666666655443 4566777777777777778777777777777655433333333333 334677777777
Q ss_pred HHHHHHhCC
Q 006396 120 LFCLMLKYG 128 (647)
Q Consensus 120 ~~~~~~~~~ 128 (647)
-|.+.-+..
T Consensus 155 d~~~fYQ~D 163 (297)
T COG4785 155 DLLAFYQDD 163 (297)
T ss_pred HHHHHHhcC
Confidence 766666653
No 245
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.31 E-value=0.0063 Score=34.32 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
|.+..+|..++.+|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 8889999999999999999999963
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.28 E-value=0.35 Score=46.34 Aligned_cols=138 Identities=12% Similarity=-0.021 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 11 MVHDAVFVIAKMKELDLKVSIQTYNSLLY--NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQE 88 (647)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 88 (647)
+...-++.-.++++. .|+....-.+++ .+....+|.++|+++.+.+- ..+......+... ..++.
T Consensus 183 np~aRIkaA~eALei--~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE-------~~lg~s~~~~~~g----~~~e~ 249 (539)
T PF04184_consen 183 NPQARIKAAKEALEI--NPDCADAYILLAEEEASTIVEAEELLRQAVKAGE-------ASLGKSQFLQHHG----HFWEA 249 (539)
T ss_pred CHHHHHHHHHHHHHh--hhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH-------Hhhchhhhhhccc----chhhh
Confidence 344444455555554 355555555555 45566777777777664221 0000000000000 01111
Q ss_pred hhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006396 89 TAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLH-PDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
.......+-..+-..+..++.+.|+.++|.+.|+++.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111111222333445566666777788787777777764211 1233566677777777777777777777643
No 247
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.24 E-value=1.2 Score=42.85 Aligned_cols=167 Identities=7% Similarity=0.037 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
.|....-+++..+...-...-...+..+|...| .+...+..++.+|... ..+.-..+|+++.+..+ .|...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 444555566666666656666666666666543 4555566666666655 44555666666666322 1233333444
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISL--T---KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
..|.+ ++.+.+..+|.++...=++. + ...|..+.. .-..+.+....+..+.. .
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiq-------------------t 197 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQ-------------------T 197 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHH-------------------H
Confidence 44444 66666666666666431111 1 112322221 11234444444444443 3
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
..|...-...+..+-.-|....++++|+++++.+++.+
T Consensus 198 ~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 198 KLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 34555556677777788889999999999999877654
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.15 Score=45.85 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=80.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN----TIIRSFCKCKDLR 500 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 500 (647)
..|+..+|-..++++.+. .+.|...+...-.+|.-.|+...-...++++.-. -.+|...|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345556665666665554 2445555665566666666666666666665542 123332222 2222333566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH---NISLTKVAYTTIIKAHCAEGDVHKAMTFFC 577 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (647)
+|++..++..+.+ +.|.....++...+...|+..++.++..+-... +--.-...|...+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6666666666632 234455555555566666666666665544321 101112234444445555666666666666
Q ss_pred HHH
Q 006396 578 QMV 580 (647)
Q Consensus 578 ~~~ 580 (647)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 533
No 249
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.16 E-value=1.1 Score=41.69 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 006396 239 IAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGL 318 (647)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (647)
.+.+..+.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++-.. .-++.-|...+..+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345566777777888888888877765 46888888888888888888876664332 12446677777777
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 319 CEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYR 367 (647)
Q Consensus 319 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 367 (647)
...|...+|..+...+. +..-+..|.+.|++.+|.+.-.
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 77888777777765521 1344666777777777766543
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.15 E-value=0.014 Score=35.41 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=20.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAI 104 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 104 (647)
+|..++..+...|++++|+++|+++++..+. +...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555555666666666666666666554332 34444433
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.12 E-value=0.082 Score=41.48 Aligned_cols=56 Identities=5% Similarity=-0.101 Sum_probs=34.1
Q ss_pred hcCChhHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCC
Q 006396 40 NLRHTDIMWDLYDDIKVSETP--RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFG 95 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 95 (647)
+.|+++.|...|+.+...-|. -...+...++.++.+.|++++|+..+++.++.+|.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 566777777777766653321 12334555666677777777777777776665544
No 252
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.11 E-value=0.084 Score=43.49 Aligned_cols=92 Identities=15% Similarity=-0.004 Sum_probs=57.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPT-----SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+-+.+.|++++|..-|..++.. .++. ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 44455677777777777777763 1221 3344555566667777777777777777643 223334555566677
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006396 565 AEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~ 583 (647)
+...+++|+.-|+++++..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 7777777777777777765
No 253
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.6 Score=37.72 Aligned_cols=125 Identities=13% Similarity=0.056 Sum_probs=77.3
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCC
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSV-VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF-SYNIL--IHGLCIAGS 148 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 148 (647)
+.+.|..++|+.-|......|...-+ -....+.......|+...|...|+++-.....|... -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45677788888888887765543222 234455556677788888888888887664333322 11111 123456778
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
+++...-.+.+...+.+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 8877777777655544444455556666666777777777777776653
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.01 E-value=0.33 Score=38.25 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=31.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.+..-+...++.|++++|+..|+.+...-+.. ...+-..++.+|.+.|+++.|...+++.++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554432211 1224444555555555555555555555554
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=2.3 Score=43.81 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=67.6
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILF 85 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 85 (647)
+.+.|++++|.+.|.+.+.. ...+......+ ...+.......++.+...+. .+...-..|+.+|.+.++.++-.+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfL-daq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF--LEPSEVIKKFL-DAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc--CChHHHHHHhc-CHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHH
Confidence 45566666666666666543 11112222222 33344444555555555444 4445556666666666666666555
Q ss_pred HHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 86 LQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
.+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++. ..+++++|++.+..+
T Consensus 454 I~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 454 ISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 54433 1111 01133444555555555555544333221 2333333333 346667776666655
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.66 Score=37.52 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=92.9
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH---hHHHHHH
Q 006396 33 TYNSLLY--NLRHTDIMWDLYDDIKVSETPRNVY-TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV---SLNAIMS 106 (647)
Q Consensus 33 ~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 106 (647)
.|...|. +.+..++|+.-|..+...+....+. +.........+.|+...|...|+++-.-...|... .-..-.-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3444444 7789999999999998866544443 34445667789999999999999987644444332 1222333
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 107 RYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
.+...|.++......+.+...+.+-....-..|.-+-.+.|++.+|.++|..+...
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 56688999999988888776553334445567777778999999999999999764
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.96 E-value=1.3 Score=40.70 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=61.7
Q ss_pred HhcCChhHHHHHHHHhhcCC--CCcCHH-----hHHHHHHHHHhcC-ChhhHHHHHHHHHhC----C----CCCCH----
Q 006396 74 CQQSRLQDAILFLQETAGKE--FGPSVV-----SLNAIMSRYCKLG-FAEVAKGLFCLMLKY----G----LHPDA---- 133 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~~---- 133 (647)
.++|+.+.|..++.++.... ..|+.. .+..++......+ +++.|..++++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45666666666666654422 112211 2344444444555 666666666555442 1 12222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 134 -FSYNILIHGLCIAGSME---EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 134 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.++..++.+|...+..+ +|..+++.+... .+-.+..+..-+.++.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445555565555433 344455555433 2223444445555555566667777777777665
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.93 E-value=0.18 Score=39.27 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 006396 514 LEPTSATYNILIDGLCVNGDLKNADCLLVSLQE-HNISLTKVAYTTIIKAH 563 (647)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 563 (647)
+.|+..+..+++.+|+..|++..|.++.+.+.+ -+++.+..+|..|++-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445555555555555555555555555555554 23444455555555433
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.89 E-value=0.35 Score=37.63 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVI---------------GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
|..++..++.++++.|+.+....+++..-.- ...|+..++.+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567778888888888888888888765421 1346777888888888888888888888888877
Q ss_pred -CCCCCCHHHHHHHHHHHh
Q 006396 512 -HNLEPTSATYNILIDGLC 529 (647)
Q Consensus 512 -~~~~p~~~~~~~l~~~~~ 529 (647)
.+++.+...|..|+.=..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 566667788877775444
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.89 E-value=1.4 Score=40.50 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCChh---hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAE---VAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
++..++.+|...+.++ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|... +......+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 5667777777766644 4555666664442 222445556667776778888888888888775 3323344554444
Q ss_pred HHHh--cCChhhHHHHHHHHHhc
Q 006396 177 GFHL--LSQISGAWKVIQKLLIK 197 (647)
Q Consensus 177 ~~~~--~~~~~~a~~~~~~~~~~ 197 (647)
.+.. ......+...+..+...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHH
Confidence 4422 22234455555555444
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=2.6 Score=42.87 Aligned_cols=137 Identities=18% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--hhhHHHHHHHHHhcCCC
Q 006396 128 GLHPDAFSYN-----ILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ--ISGAWKVIQKLLIKGSD 200 (647)
Q Consensus 128 ~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 200 (647)
|++.+..-|. .++.-+...+.+..|.++...+...-... ...+.....-+.+..+ -+.+.+.+.+=.....
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 4555544443 34555666788888888877774321111 4566666666665432 1222222222222111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----cCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006396 201 PDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFK----LNVIAYSVLLSSMCKSGRIDEALGLLYEMEA 266 (647)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 266 (647)
-+...|..+.+.....|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 24456777777777888888888877653332211 1222333444445555555555555555443
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.76 E-value=0.38 Score=47.03 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
.+.|+.+.|.++.++ ..+...|..|.....+.|+++-|++.|++... |..|+-.|...|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344555555444321 22444555555555555555555555554321 223333444455555444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFC 577 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (647)
++.+.....| -++....++.-.|+.++..+++.
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444433 12233333444455555444443
No 263
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.73 E-value=1.8 Score=40.43 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=57.1
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++...+... + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34444555555666666665555443 45666666666666666666655543321 1 12244555666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 505 (647)
+.|+..+|..++.++ ++ ..-+..|.++|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 666666666655541 11 2334555666666666554
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.68 E-value=1.4 Score=40.40 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETK-AIGP---THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-----PDQITYN 487 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~ 487 (647)
..+..++.+..++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+.... ....++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 33444444444455555444433321 2112 1123344666777778888888888887763211 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHH-----HHHHHHHHhhcCChhhHHHHHHHHHH----cCCCCC-H
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWL----HNLEPTSAT-----YNILIDGLCVNGDLKNADCLLVSLQE----HNISLT-K 553 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~ 553 (647)
.+...|.+..|+++|.-+..++.+ .++..-... ...+.-++...|+..+|.+..++..+ .|-.+. .
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 888888899999998887776654 122211222 23445567778888888887777654 332222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.....+++.|...|+.+.|..-|+.+..
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2456777888889999998888887653
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=0.93 Score=45.18 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHhhcCChhh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITY-NTIIRSFCKCKDLRKAFQLLNQMWLH--NL-EPTSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g~~~~ 536 (647)
..+.+.+.++++.+.+. -|+...| -.-.+.+...|++++|.+.|++.... .. ......+--++.++.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 44567777777777764 3444433 23344556678888888888865531 11 1134455566777788888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTII-KAHCAEGDV-------HKAMTFFCQMVE 581 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 581 (647)
|...|.++.+.+ .-+..+|..+. -++...|+. ++|.++++++-.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888753 33333443333 344556777 777777777653
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.63 E-value=0.59 Score=42.67 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC--CHHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVI-GVTP---DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH---NLEP--TSAT 520 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p--~~~~ 520 (647)
.|..+.+++.+..++.+++.+-..-... |..| .......+..++...+.++++++.|+.+.+. .-.| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444444444555555544433321 2222 1234455777888888999999999998862 1122 3567
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc--CCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEH--NISL-T------KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDY 591 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 591 (647)
+..|...|.+..|+++|.-+..++.+. .+.. | ......+.-++...|+.-+|.+..+++.+....
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~------ 238 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ------ 238 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH------
Confidence 889999999999999998888777642 1221 1 123445666788889999999988887764311
Q ss_pred hhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 592 TKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 592 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.|-.+ -......++++|...|+.|.|..-|+.+.
T Consensus 239 ----------~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 239 ----------HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred ----------hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11111 24455678899999999999888777654
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.52 E-value=0.87 Score=44.63 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=82.3
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
....-.|+++++..+.+.-.-. +..+......+++.+.+.|-++.|+++-. |+. .-.....+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 3445566777765555411100 11123446666676777777777776632 222 1222334567777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006396 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (647)
.|.++.++. .+...|..|.......|+++-|.+.|++... +..|+-.|...|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 776665433 3556777777777777777777777765432 4556666666777666666666655
Q ss_pred hCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 231 SQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYE 263 (647)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 263 (647)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 543 134444555555666666655554
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.99 Score=40.82 Aligned_cols=160 Identities=10% Similarity=-0.015 Sum_probs=112.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH----HHHHHHH
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSY----NILIHGL 143 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~ 143 (647)
.-+..+...|+..+|-..++++++.. +.|...+...=.++.-.|+...-+..+++++..= .++...| ..+.-++
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhH
Confidence 33455677899999999999988764 3467778888888888999988888898887541 2333222 2333445
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChH
Q 006396 144 CIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP---DIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 220 (647)
...|-+++|.+..++..+.+ +.|.....++..++...+++.++.++..+-...=-.. -..-|=...-.+...+.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 57899999999999988764 4567777888888888999999988877654321111 1222334445566778999
Q ss_pred HHHHHHHHHH
Q 006396 221 EGLKLREVML 230 (647)
Q Consensus 221 ~a~~~~~~~~ 230 (647)
.|+++|+.-.
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.46 E-value=0.89 Score=38.35 Aligned_cols=182 Identities=14% Similarity=0.023 Sum_probs=103.7
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 5 VYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
.|-..|-+.-|+--|.+.+...+. |++..+..+.- ..|++|.|.+.|+...+-+| ....+...-+-.+---|++.-|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhh
Confidence 455677788888889998887654 55555555444 88999999999999998555 3333333333345567899999
Q ss_pred HHHHHHhhcCCCC-cCHHhHHHHHHHHHhcCChhhHHHHH-HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 006396 83 ILFLQETAGKEFG-PSVVSLNAIMSRYCKLGFAEVAKGLF-CLMLKYGLHPDAFSYNILIHG-LCIAGSMEEALEFTNDM 159 (647)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 159 (647)
.+-|...-+.++. |-...|..+.. +.-++.+|..-+ ++.. ..+..-|...|.. |...=..+ .+++++
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e---~l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE---TLMERL 222 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH---HHHHHH
Confidence 9888887765433 11223332222 234666776544 3333 2344445444433 32222222 233333
Q ss_pred hhCCC------CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 160 GRHGV------EPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 160 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
..... +.-.+||.-+...+...|+.++|..+|+-.+..
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22110 011345555666666667777776666666544
No 270
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.11 Score=42.90 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHH------hcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHH
Q 006396 14 DAVFVIAKMKELDLKVSIQTYNSLLY------NLRHTDIMWDLYDDIKVSETPRN--VYTNSIVIDGLCQQSRLQDAILF 85 (647)
Q Consensus 14 ~A~~~~~~~~~~~~~~~~~~~~~ll~------~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 85 (647)
+.....+.+...+. -..+.....+. .+++++.|..-++..+......+ .-+-..|.+.....|.+++|...
T Consensus 70 ~~~~~~ekf~~~n~-~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANG-KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 55555666665421 12232222222 78899999999888774222111 22345577888899999999999
Q ss_pred HHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006396 86 LQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 128 (647)
++.....++ .......-..++...|+-++|+..|++.++.+
T Consensus 149 L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 LDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 987765432 22335556678889999999999999998874
No 271
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.39 E-value=0.04 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+..|..++.++...|++++|++.++++++..|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999998664
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.28 E-value=0.046 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.+|..++.++...|++++|+..++++++.+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999664
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.26 E-value=1.9 Score=37.81 Aligned_cols=60 Identities=17% Similarity=0.042 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.+++-|.+.|.+..|..-++++++.- .- -+-..+.+..+..+|.+.|-.++|...-+-+-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y-~~-----------------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENY-PD-----------------TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc-cc-----------------ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45566777788888887777777653 00 02224566667777777887777776654433
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=1.4 Score=36.63 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 613 VMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.-++++...|+.++|+.-|+++++.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455555555555555555555544
No 275
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=4.4 Score=41.32 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+++..++|++-+++-+... .+.-|.....+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555666788888887776653 4677777777788888888877666554432 2445666778888
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (647)
+.|+.++|.+++-++-. .. ..+.+|.+.|++.+|.+..
T Consensus 756 ~~~n~~EA~KYiprv~~-------------------------l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-------------------------LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-------------------------hH----HHHHHHHHhccHHHHHHHH
Confidence 88888888888766521 11 4566777777777776553
No 276
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.11 E-value=3.4 Score=39.91 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=65.6
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--cCChhhHHHHHHHHHHcCCCCCHHHH
Q 006396 480 TPDQITY-NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV--NGDLKNADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 480 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 556 (647)
.++..++ +.++..+.+.|-..+|...+..+... .+|+...|..+++.=.. +-+...+..+|+.|... +..++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 4444443 55667777788888888888888774 24466777666644221 12377778888888753 23667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.....--...|..+.+-.++-++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7776666677877777777766654
No 277
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.89 E-value=0.022 Score=32.15 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 006396 51 YDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAI 83 (647)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 83 (647)
|+++++..| .++.+|+.++..+...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555443 66666666777676777666664
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.85 E-value=0.066 Score=30.68 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
+|..|+.+|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999664
No 279
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.71 E-value=1.8 Score=34.77 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
.++..+...+.+.....+++.+...+ +.+....+.++..|++.+ ..+....++. .++.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555544 244445555555555432 2233333331 011122223445555555
Q ss_pred ChhhHHHHHHHH
Q 006396 533 DLKNADCLLVSL 544 (647)
Q Consensus 533 ~~~~A~~~~~~~ 544 (647)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555554
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.59 E-value=3.2 Score=37.08 Aligned_cols=223 Identities=17% Similarity=0.107 Sum_probs=154.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCccchHHHHHHHHhcCCHHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCI-QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-RISPSIVTFNSLIYGFCKNGKVADAR 398 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 398 (647)
.+....+...+......... ............+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555666666666554322 13567777788888999999999998887752 23335556666777777888899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 399 RLLDTIKLHGLEPSAVTYTTFMN-AYCEEGNIQRLLALLQEMETKAI--GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMY 475 (647)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 475 (647)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888754333 122222333 78899999999999999865321 1233344444445667889999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 476 VIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 476 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
... +. ....+..+...+...++++.|...+..... ..|+ ...+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 863 33 467788888889999999999999999988 3444 444455555555666788888888887764
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.56 E-value=1.6 Score=33.54 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=75.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 504 (647)
-.|..++..++..+.... .+..-++-+|--....-+-+-..++++.+-+. -|. ..+|++.+...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 346666666666665543 23334444443333333333344444433221 111 23455555554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 505 LLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+-.+ ..+...+..-+..+..+|+-++-.+++..+.+.+ .+++.....++.+|.+.|+..++-++++++.+.|
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44432 2345556666778888888888888888887643 6788888888999999999999999999988887
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.54 E-value=0.52 Score=39.08 Aligned_cols=92 Identities=15% Similarity=-0.026 Sum_probs=68.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSV----VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
++-+++.|++++|..-|..++..-++... ..|..-+.++.+.+.++.|+.-..+.++.+ +....+...-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 55678899999999999998875433222 246666778888999999998888888875 3344455555667888
Q ss_pred cCCHHHHHHHHHHHhhC
Q 006396 146 AGSMEEALEFTNDMGRH 162 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~ 162 (647)
...+++|++-|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88889999888888775
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.40 E-value=2.2 Score=34.51 Aligned_cols=72 Identities=11% Similarity=-0.229 Sum_probs=38.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
+..-...++.+++..++..+.-..|. ....-..-...+..+|++.+|..+|+.+... .|....-..|+..|.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCL 88 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHH
Confidence 34445666677777776666553322 2223333444466677777777777776654 233333334444443
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.36 E-value=0.13 Score=46.32 Aligned_cols=92 Identities=11% Similarity=-0.017 Sum_probs=62.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
-.+-|.+.|.+++|+.+|...+. ..| |+.++..-..+|.+..++..|+.-...++..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 35567778888888888887776 455 77777777778888888887777777766532 122335555555555666
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
...+|.+-++.+++..
T Consensus 180 ~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALE 195 (536)
T ss_pred hHHHHHHhHHHHHhhC
Confidence 7777777777776654
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.32 E-value=2.3 Score=34.36 Aligned_cols=51 Identities=27% Similarity=0.174 Sum_probs=27.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
.+.++.+++..++..+.- +.|. ...-..-...+...|+|.+|.++++++.+
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345566666666666655 4443 22222233445566666666666666654
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.26 E-value=5.4 Score=38.36 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhh
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTK 593 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 593 (647)
...+|..++..+.+.|.++.|...+.++...+... .+.+...-++.+...|+..+|+..++..+.............
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 46788888999999999999999999988743222 345566667788888999999999988877322211000000
Q ss_pred HHHHh------h-------hhCCCCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Q 006396 594 SFFCM------M-------LSNGFPPDQEICEVMLIAFHQG------GDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 594 ~~~~~------~-------~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~ 639 (647)
..... . .......-..++..++.-.... ++.+++...++.+.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 00000 0 0000011145566666666666 788888888888887543
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.21 E-value=0.12 Score=29.56 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
+|..++.+|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888899999999999988653
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.18 E-value=0.73 Score=41.38 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.++..++..+...|+.+.+...++++.+.. +-+...|..++.+|...|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 444556666666677777777777776642 44555677777777777777777777766654
No 289
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.12 E-value=8 Score=39.78 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHH-------CCCCCCccchHHHHHHHHhc
Q 006396 324 ITEARMYFDSLIMSNCIQDVVLYNIMIDGY-----VKLGNIGEAVQLYRQLIE-------KRISPSIVTFNSLIYGFCKN 391 (647)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 391 (647)
...+.++++...+.+ +......+..+| ....+.+.|+.+++...+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888776 333333333332 345689999999998876 44 344666777777764
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 006396 392 G-----KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE-EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC----KQ 461 (647)
Q Consensus 392 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 461 (647)
. +.+.|..++......| .|+.......+..... ..+...|...|......|.. ..+..+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 6677889888888876 4554444333332222 24678899999998888742 22223333322 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hh----cCCh
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGL---CV----NGDL 534 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~ 534 (647)
.+.+.|..++.+..+.| .|...-....+..+.. +.++.+.-.+..+.+.+.+.....-..+.... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47888999999888887 4443333333444444 77777777776666654322111111111111 11 1244
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAE----GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
..+...+.+....| +......+...|..- .+++.|...|..+... . ...
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~-----------------------~-~~~ 508 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ-----------------------G-AQA 508 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh-----------------------h-hHH
Confidence 55666666665433 666777777766654 2577777777777653 2 566
Q ss_pred HHHHHHHHHcC-C--CHHHHHHHHHHHHhCC
Q 006396 611 CEVMLIAFHQG-G--DLGSVFELAAVMIKSG 638 (647)
Q Consensus 611 ~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 638 (647)
...++..+-.. | .+..|.+++..+.+.+
T Consensus 509 ~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 509 LFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 66677666553 2 2688888888877654
No 290
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.82 E-value=2.9 Score=33.61 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ 461 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (647)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555556666666666655544 244555566666665442 2333333331 1 1222233345555555
Q ss_pred CCHHHHHHHHHHH
Q 006396 462 WKLQEAVQLLEDM 474 (647)
Q Consensus 462 g~~~~a~~~~~~~ 474 (647)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.74 E-value=5.6 Score=36.71 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLL 245 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (647)
..+.++++.+.+.|+++....|..+.
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 35555666666666555555444433
No 292
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.73 E-value=1.1 Score=37.55 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+..+...|.+.|+.+.|.+.+.++.+....+. ..++-.+++.....|++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444445555555555444444322221 3333444444444444444444444443
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.50 E-value=1.3 Score=37.23 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHHHH--
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHP-DAFSYNI-- 138 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~-- 138 (647)
.++..++..|.+.|+.++|.+.|.++.+....+. ...+..+++...-.+++..+.....++...--.+ +...-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677888999999999999999999877544333 3467888888889999998888887776542121 1211111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHh
Q 006396 139 LIH--GLCIAGSMEEALEFTNDMG 160 (647)
Q Consensus 139 l~~--~~~~~~~~~~a~~~~~~~~ 160 (647)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234678888877776653
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.47 E-value=2.8 Score=32.34 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
.-.|..++..+++.+..... +..-+|-++--....-+-+-..+.++.+=+ -.| ...+|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFD----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFD----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-----------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------chhhcchHHHH
Confidence 34577777777777776532 333344444333333344444444444332 111 11233333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
..+-.+ ..+...+...+......|+.+.-.+++..+.+.+ .++++....++.+|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~---------------------~~~p~~L~kia~Ay 130 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE---------------------EINPEFLVKIANAY 130 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH--------------------------S-HHHHHHHHHHH
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc---------------------CCCHHHHHHHHHHH
Confidence 333222 2234556667788888999999989998887655 78899999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCC
Q 006396 619 HQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+.|+..+|.++++++.+.|.+
T Consensus 131 ~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 131 KKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHhcchhhHHHHHHHHHHhchH
Confidence 9999999999999999998863
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.28 E-value=3.8 Score=44.19 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=91.0
Q ss_pred cCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 76 QSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEF 155 (647)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (647)
.+++++|+..+..+-. ..|.-....-.+.|-+.+|+.++.-=.+ .....|.+....+.....+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHH
Confidence 4566777666655431 1233344444566777777766532111 1122344445555566777777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV--TYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
|+..-+ ...-+.+|..+|++.+|+.+..++... .+.. +-..|+.-+...+++-+|-++..+..+.
T Consensus 962 Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 962 YERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 766522 123456677788888888877776432 1211 1245666677778888887777777654
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 234 FKLNVIAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
....+..+++...+++|.++-....
T Consensus 1029 -------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 -------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1223445556666777776665543
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.18 E-value=8.4 Score=37.04 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
....+|..++..+.+.|.++.|...+..+...+... .+.+...-+..+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777777778888888888777776632111 344444555666677777777777776665
No 297
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=2.1 Score=36.89 Aligned_cols=82 Identities=10% Similarity=-0.049 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTS-ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 573 (647)
...++.|...+.+.+. +.|+. .-|..-+.++.+..+++.+..--.++++ +.||.. ....+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 3445556665555555 44543 3344555556666666666666666655 344443 4445555566666666666
Q ss_pred HHHHHHHH
Q 006396 574 TFFCQMVE 581 (647)
Q Consensus 574 ~~~~~~~~ 581 (647)
..+.++..
T Consensus 99 ~~Lqra~s 106 (284)
T KOG4642|consen 99 KVLQRAYS 106 (284)
T ss_pred HHHHHHHH
Confidence 66666643
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.16 E-value=0.33 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|..++.++...|++++|++.++++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 457778888888888888888888888765
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.04 E-value=4.3 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=12.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 124 MLKYGLHPDAFSYNILIHGLCIAGSMEE 151 (647)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (647)
+.+.+++|+...+..++..+.+.|++..
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444445555544444433
No 300
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.96 E-value=0.84 Score=41.01 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
..++..++..+...|+.+.+...++++.... |-+...|..+..+|.+.|+...|+..|+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---------------------ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3477888999999999999999999999988 8899999999999999999999999999
Q ss_pred HHHh-----CCCCCCC
Q 006396 633 VMIK-----SGLLPDK 643 (647)
Q Consensus 633 ~~~~-----~~~~~~~ 643 (647)
++.+ .|+.|-.
T Consensus 212 ~l~~~~~edlgi~P~~ 227 (280)
T COG3629 212 QLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHhhhhcCCCccH
Confidence 8764 5666543
No 301
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.73 E-value=0.73 Score=40.54 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006396 255 DEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDK 288 (647)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (647)
+-++.++++|...|+.||..+-..++.++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3467777777777777777777777777776665
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.56 E-value=0.75 Score=41.65 Aligned_cols=92 Identities=12% Similarity=-0.083 Sum_probs=66.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 69 VIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 69 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
-++-|+++|.+++|++.|.+.....+ .++.++..-+.+|.+...+..|..-...++..+ ..-..+|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 46678999999999999999887542 377888888899999999988887777776543 2223345555555555566
Q ss_pred HHHHHHHHHHHhhC
Q 006396 149 MEEALEFTNDMGRH 162 (647)
Q Consensus 149 ~~~a~~~~~~~~~~ 162 (647)
..+|.+-++..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 77777777777664
No 303
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.54 E-value=0.16 Score=28.17 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++..++.++.+.|++++|.+.++++++.-|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567889999999999999999999998654
No 304
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.42 E-value=0.22 Score=27.92 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.+|..++..|...|++++|.+.++++++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4788999999999999999999999998553
No 305
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.29 E-value=4 Score=32.47 Aligned_cols=53 Identities=11% Similarity=-0.171 Sum_probs=29.3
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
...++.+++..+++.+.-..|. ....-..-...+..+|++.+|.++|+.+...
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3466666666666666543222 1222223334456667777777777776655
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.10 E-value=0.39 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=10.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
No 307
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.92 E-value=2.3 Score=37.64 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=33.2
Q ss_pred CccchHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCK-----NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE 425 (647)
Q Consensus 377 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (647)
|-.+|...+..|.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 44556555655543 35566666677778888888888888888877543
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.59 E-value=4 Score=40.39 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEE 151 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (647)
...+.|+++.|.++..+.. +..-|..+..+....|++..|.+.|.+... |..|+-.+...|+.+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3556777777777665543 344577777777777777777777765542 3445555555666665
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKL 194 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (647)
...+-....+.|. .| .-.-+|...|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555555442 12 2233455667777777666554
No 309
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=4.9 Score=36.31 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 006396 372 KRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG---LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTH 448 (647)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (647)
.|.+....+....+..-....+++.++.++-++.... ..|+.. -.+.++.+ -.-++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 3455566667777777777788888888887776431 111111 12222322 334677888888888888999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIG 478 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 478 (647)
.+++.+++.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999888887776543
No 310
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.30 E-value=38 Score=40.34 Aligned_cols=316 Identities=12% Similarity=0.059 Sum_probs=165.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCC-CCcccHHHHH-HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006396 278 ILIRGLCKQDKVHKAIQLYNEMCSKRIS-PNSFAHGAIL-LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK 355 (647)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (647)
.+..+-.+.+.+..|+..++.-.....+ .....+..++ ..|...++++...-+...... ++..+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4455666778888888888874111000 0112222333 377777887777665553211 222333 3445567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHH
Q 006396 356 LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT-FMNAYCEEGNIQRLLA 434 (647)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 434 (647)
.|+++.|...|+.+.+.+++ ...+++.++......+.++......+...... .+....++. =+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999887432 46677777777777888888777666555431 233333332 2334456667776665
Q ss_pred HHHHHHhCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHHHHcCCCC--------C-HHHHHHHHHHHHhcCCHHH
Q 006396 435 LLQEMETKAIGPTHVTYTV--VIKGLCKQ--WKLQEAVQLLEDMYVIGVTP--------D-QITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~ 501 (647)
.+. .. +..+|.. ++....+. .+.-.-.+.++.+.+.-+.| + ...|..++....-. +
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 554 11 1222222 22222221 11111112333333211111 0 11222222221111 1
Q ss_pred HHHHHHHHHhCCCCCC------HHHHHHHHHHHhhcCChhhHHHHHHHHH-Hc----CCCC-CHHHHHHHHHHHHhcCCH
Q 006396 502 AFQLLNQMWLHNLEPT------SATYNILIDGLCVNGDLKNADCLLVSLQ-EH----NISL-TKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 502 A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~----~~~~-~~~~~~~l~~~~~~~g~~ 569 (647)
-....+... +..++ ...|..-+..-....+..+-+--+++.. .. ++.. -..+|...++.....|.+
T Consensus 1609 l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111111 12222 2333333322222222222222222222 21 1111 245899999999999999
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+.|...+-.+.+.+ -+.++...++.+...|+...|..+++..+..
T Consensus 1687 q~A~nall~A~e~r-----------------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-----------------------LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc-----------------------cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99999888887654 3567888899999999999999999998865
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.64 E-value=23 Score=36.58 Aligned_cols=277 Identities=16% Similarity=0.069 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHH--HHHH-HhhcCCHHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHhcC
Q 006396 288 KVHKAIQLYNEMCSKRISPNSFAHGA--ILLG-LCEKEMITEARMYFDSLIM-------SNCIQDVVLYNIMIDGYVKLG 357 (647)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 357 (647)
....+.+.++.....|.. ....... ...+ +....+.+.|..+++.... .+ .+.....+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 356788899988887622 2222222 2223 4467799999999998876 33 3445667777887743
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----H
Q 006396 358 -----NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKN---GKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC----E 425 (647)
Q Consensus 358 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 425 (647)
+...|..++.+..+.|.+ +. ...+...+... .+...|.++|......|.. .. +-.+..+|. -
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGV 376 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCc
Confidence 567799999998887644 33 23334444332 4678999999999988732 22 222222222 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hh----cCC
Q 006396 426 EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSF---CK----CKD 498 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~ 498 (647)
..+...|...++..-+.| .|...--...+..+.. +.+..+.-.+..+.+.|.+.....-..++... .. ..+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 357889999999999887 3433322233333444 77788877777777766432222111111111 11 225
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C--CHHH
Q 006396 499 LRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN----GDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE-G--DVHK 571 (647)
Q Consensus 499 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~ 571 (647)
...+...+.+....| +......+.+.|..- .+++.|...+......+ ......+...+..- | ....
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHH
Confidence 666777777776544 566666777776643 35888888888888754 44444444433321 1 2567
Q ss_pred HHHHHHHHHHcC
Q 006396 572 AMTFFCQMVEKG 583 (647)
Q Consensus 572 A~~~~~~~~~~~ 583 (647)
|.+++..+...+
T Consensus 528 a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 528 AKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHhcC
Confidence 777777776544
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.64 E-value=7.4 Score=31.00 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=35.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCC
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKE 93 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 93 (647)
...+++++..+++-+..-.| ..+..-..-+..+...|++.+|..+|+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 56677888888877765444 333333444556677888888888888887643
No 313
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.61 E-value=8.6 Score=31.68 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 153 LEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
.+.+..+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+. +....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 355666677788899999999999999999876655444 4455556554443332222 2334455554444443
Q ss_pred CCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006396 233 GFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCS 301 (647)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (647)
=...+..+++.+...|++-+|.+..+..... +......++.+..+.++...-..+++-...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1124567778888999999998888775332 223335566777777776655555555544
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.61 E-value=25 Score=36.95 Aligned_cols=193 Identities=11% Similarity=0.084 Sum_probs=93.3
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCc--ccHHHHHHHHH-hcCChhHHHHHHHHhhcCCCCcCHH-----h
Q 006396 30 SIQTYNSLLYNLRHTDIMWDLYDDIK-VSETPRNV--YTNSIVIDGLC-QQSRLQDAILFLQETAGKEFGPSVV-----S 100 (647)
Q Consensus 30 ~~~~~~~ll~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~ 100 (647)
+...|..+| ..|+..++.+. ...++|.. .++..++..+. ...++++|+..+.+.....-+++.. .
T Consensus 29 ~l~~Y~kLI------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 29 QLKQYYKLI------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hHHHHHHHH------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 344555555 34556666655 33333322 34555666665 6677777777777764432222221 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhHH
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLH----PDAFSYNIL-IHGLCIAGSMEEALEFTNDMGRHG---VEPDAITYS 172 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 172 (647)
-..++..+.+.+... |....++.++.--. +-...|..+ +..+...+++..|.+.++.+.... ..|-..++.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 234455555555444 77777766653111 112233333 222223367777777777665532 223333333
Q ss_pred HHHHHHH--hcCChhhHHHHHHHHHhcCC---------CCCcchHHHHHHHH--HhcCChHHHHHHHHHH
Q 006396 173 ILAKGFH--LLSQISGAWKVIQKLLIKGS---------DPDIVTYTVLICGY--CQIGNVEEGLKLREVM 229 (647)
Q Consensus 173 ~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 229 (647)
.++.+.. ..+..+.+.+.++.+..... .|...+|..++..+ ...|++..+...++.+
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444333 34445555555555532211 12233455555443 3456665665554444
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.33 E-value=0.74 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+++.++..|...|++++|..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999999874
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.28 E-value=3 Score=34.34 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
++|...|+++.+ ..|+...|..-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 334444444444 345555555544433
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.21 E-value=3.3 Score=29.90 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+..+-++.+...++-|++.+..+-+++|.+.+++..|.++++.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444455555555555555555555555555555444
No 318
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.21 E-value=27 Score=36.70 Aligned_cols=168 Identities=9% Similarity=0.018 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 461 QWKLQEAVQLLEDMYVIG-VTPDQ--ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
..+.+.|..++....... +.+.. .++..+.......+...++...++..... ..+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456788888888775432 22222 22333433333332255667777665432 22444455555566688999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCC--C----CCCH---
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNG--F----PPDQ--- 608 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~--- 608 (647)
...+..|... ..-...-...+++++...|+.++|..+|+++... .+|+..+-.-..... + +|..
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQRLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHHHcCCCCCCCCCCCCchhhh
Confidence 9999888653 2334445567888888899999999999998432 234433322111111 1 0111
Q ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 609 ---EICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 609 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.--...+..+...|+..+|...+..+...
T Consensus 405 ~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 405 LTQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred hccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11233456777889999998888777653
No 319
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.83 E-value=0.69 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.8
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELD 26 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~ 26 (647)
|+++|...|+.+.|+.++++++..+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 7899999999999999999999764
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.67 E-value=30 Score=36.60 Aligned_cols=224 Identities=17% Similarity=0.112 Sum_probs=121.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccc-------hHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 006396 352 GYVKLGNIGEAVQLYRQLIEKRISPSIVT-------FNSLI-YGFCKNGKVADARRLLDTIKLH----GLEPSAVTYTTF 419 (647)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 419 (647)
......++++|..++.++...-..|+... ++.+- ......++++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34457788899888888766433332221 22222 2234578889998888877653 123345566777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHH--HHHhcCCHHH--HHHHHHHHHHc---CCC---CCHHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHV---TYTVVIK--GLCKQWKLQE--AVQLLEDMYVI---GVT---PDQITY 486 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~--~~~~~g~~~~--a~~~~~~~~~~---~~~---~~~~~~ 486 (647)
..+..-.|++++|..+..+..+..-.-+.. .|..+.. .+..+|.... ....+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777778899999988887665532122323 3333322 2455663332 23333333221 111 122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHH--HHHHHHHhhcCChhhHHHHHHHHHHcCCCC----CHHHH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMW----LHNLEPTSATY--NILIDGLCVNGDLKNADCLLVSLQEHNISL----TKVAY 556 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 556 (647)
..++.++.+ ++.+..-..... .....|-.... ..|+.+....|++++|...+.++......+ +..+-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555555 333333222222 22222222222 367788888999999999998888632222 22222
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHH
Q 006396 557 TTIIK--AHCAEGDVHKAMTFFCQ 578 (647)
Q Consensus 557 ~~l~~--~~~~~g~~~~A~~~~~~ 578 (647)
...++ .....|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 23456888888877766
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.42 E-value=1.9 Score=35.50 Aligned_cols=84 Identities=12% Similarity=0.015 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCC
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG----------DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNG 603 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (647)
++.|.+.++.....+ +.|...+.....++.... .+++|+.-|++++..+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------------------- 65 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------------------- 65 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--------------------
Confidence 345555555555443 455666655555554432 3345566666666665
Q ss_pred CCCCHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHhCCC
Q 006396 604 FPPDQEICEVMLIAFHQGGD-----------LGSVFELAAVMIKSGL 639 (647)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~ 639 (647)
|....++..++.+|...|. +++|.+.|+++.+.+|
T Consensus 66 -P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 66 -PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred -CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 5567889999988886553 5666666777666543
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.35 E-value=0.5 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
....++.++...|+.++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56688999999999999999876
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=14 Score=32.06 Aligned_cols=168 Identities=17% Similarity=0.011 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 14 DAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVS-----ETPRNVYTNSIVIDGLCQQSRLQDAILFLQE 88 (647)
Q Consensus 14 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 88 (647)
+|.++..++-+.. ++..-+. +....+.+++|.++|.++-.. ....-..+|...+..+.+.|+-++|-..|-.
T Consensus 3 ~a~~l~k~AEkK~-~~s~gF~--lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yve 79 (288)
T KOG1586|consen 3 DAVQLMKKAEKKL-NGSGGFL--LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVE 79 (288)
T ss_pred cHHHHHHHHHHhc-ccCCccc--ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 4566666666553 2222222 444556889999998887531 0001122333333344444444444333333
Q ss_pred hhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 006396 89 TAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY----G-LHPDAFSYNILIHGLCIA-GSMEEALEFTNDMGRH 162 (647)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 162 (647)
+- -+.+.+++++|...++..++. | +..-....-.+...|-.. .+++.|+..|+..-+.
T Consensus 80 A~----------------~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 80 AA----------------NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HH----------------HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 32 233333454444444433321 0 000011112233333222 4555666665555432
Q ss_pred --CCCCChhh---HHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 006396 163 --GVEPDAIT---YSILAKGFHLLSQISGAWKVIQKLLIKGSD 200 (647)
Q Consensus 163 --~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (647)
|-+.+... +..+...-+..+++.+|.++|++.......
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112222 222333344567788888888887766443
No 324
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.21 E-value=0.17 Score=45.65 Aligned_cols=118 Identities=12% Similarity=-0.022 Sum_probs=81.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 572 (647)
...|.++.|++.+...+..+ ++....|..-..++.+.+++..|++-+....+ +.||.. -|-.-..+..-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45688999999999888843 44567777778888889999999999988887 445543 343444455667999999
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+.++.+.+.+ +.+....|. -...-..+..++=...+++.++
T Consensus 202 a~dl~~a~kld--------------------~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLD--------------------YDEANSATL--KEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhcc--------------------ccHHHHHHH--HHhccchhhhhhchhHHHHHHH
Confidence 99999999887 344444443 3344445555555555555544
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=14 Score=32.00 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..++..-...+++.+|+++|++.....
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444566666666666665543
No 326
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.08 E-value=20 Score=33.78 Aligned_cols=78 Identities=8% Similarity=-0.090 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 006396 80 QDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI---AGSMEEALEFT 156 (647)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 156 (647)
+.-+.+++++++.++ .+...+..++..+.+..+.+...+-++.++... +.+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445567777777644 356677777777777777777777777777763 3356677776665543 22355555555
Q ss_pred HHH
Q 006396 157 NDM 159 (647)
Q Consensus 157 ~~~ 159 (647)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.01 E-value=8.4 Score=33.57 Aligned_cols=103 Identities=9% Similarity=-0.096 Sum_probs=58.8
Q ss_pred cCChhhHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC
Q 006396 531 NGDLKNADCLLVSLQE----HNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF 604 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (647)
...+++|.+.+.-++- .+.++. ...+..+++.|...|+.+....+++++.+.- ...+...-....-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y--------~~a~~~e~~~~~~ 161 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY--------EEAYENEDFPIEG 161 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH--------HHHHHhCcCCCCC
Confidence 3455566555544441 122333 3366777888888888665555555444310 0000000000001
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
..+..+...++....+.|+.++|.+++.+++..+-.+
T Consensus 162 ~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 162 MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 2235677788999999999999999999998765433
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.92 E-value=0.63 Score=28.01 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 612 EVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
..++++|...|+.+.|++++++++..|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 368899999999999999999998654
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.54 E-value=25 Score=34.09 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=17.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 620 QGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
...++..|++++++..+-+...+.+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEPV 812 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcch
Confidence 3468889999999988765544443
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.45 E-value=8 Score=32.75 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVM 614 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 614 (647)
++|.+.|-.+...+.--++.....++. |.-..|.++++.++.++++.. ..+-.+|++++..|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~-----------------~~~~~~n~eil~sL 184 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELS-----------------NPDDNFNPEILKSL 184 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhc-----------------CCCCCCCHHHHHHH
Confidence 567777777766553334444444444 444677888888888777654 01125667888888
Q ss_pred HHHHHcCCCHHHHH
Q 006396 615 LIAFHQGGDLGSVF 628 (647)
Q Consensus 615 ~~~~~~~g~~~~A~ 628 (647)
+..+.+.|+++.|.
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 88888888887774
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.43 E-value=64 Score=38.68 Aligned_cols=322 Identities=13% Similarity=0.069 Sum_probs=168.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006396 208 VLICGYCQIGNVEEGLKLREVMLSQGF--KLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285 (647)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (647)
.+..+-.+.+.+..|...++.-..... ......+-.+...|...+++|...-+...... .| ....-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 445566778889999999888311100 11222344455589999999988877764221 22 23344555677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHHhcCCHHHHHH
Q 006396 286 QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNI-MIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 364 (647)
.|++..|...|+.+.+.+ ++...++..++......+.+....-..+...... .+....++. =+.+--+.++|+....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 3446778878887777888877776655554432 222222322 2334456777777766
Q ss_pred HHHHHHHCCCCCCccchHHH--HHHHHhcC--CHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 006396 365 LYRQLIEKRISPSIVTFNSL--IYGFCKNG--KVADARRLLDTIKLH--------GLEPS-AVTYTTFMNAYCEEGNIQR 431 (647)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~ 431 (647)
... .. +..+|... .....+.. +.-.-.+..+.+.+. +..-+ ...|..++....-..- +.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-EN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HH
Confidence 654 11 33333332 22222222 111111222222221 11100 1233333333222111 11
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 432 LLALLQEMET-KAIGPTHVTYTVVIKGLCKQWKLQEAVQLLED-MYVIGVT-----PDQITYNTIIRSFCKCKDLRKAFQ 504 (647)
Q Consensus 432 a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 504 (647)
-.+.+..... ....-+...|..-+..-....+..+-+--+++ +...... .-..+|....+.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111000 00111112222222221111122221111221 1111112 224578888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 505 LLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
.+-.+.+.+ -+..+-..+..+...|+-..|..++++..+.+
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888887754 33455566778888999999999999988653
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.42 E-value=8.1 Score=28.33 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
+..+-++.+...++-|++.+..+.+++|.+.+++..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666666666666666654
No 333
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.41 E-value=21 Score=33.16 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
.|...+.++...+ +......+...|.. ..+.++|..+|+++.+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5666666665544 33333333333322 235666666666666655
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.23 E-value=1.4 Score=26.04 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+++.++.+|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888875
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.04 E-value=4.5 Score=29.20 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
+.=++.+-+..+....+-|++.+..+.+++|.+.+|+..|.++++.+... ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 34455666666666677788888888888888888888888888876642 122344555544
No 336
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.88 E-value=8.8 Score=28.14 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcCChh--hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 521 YNILIDGLCVNGDLK--NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
|..-...|....+.+ +..+-++.+...++.|++.+....+++|.+.+++.-|+++++-+..+-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 333334444433333 456666777777889999999999999999999999999999998764
No 337
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.88 E-value=22 Score=38.72 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=75.4
Q ss_pred ChhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHh
Q 006396 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRN-----VYTNSIVIDGLCQ 75 (647)
Q Consensus 1 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 75 (647)
|++.+|+.+|+..+|+..|.++.+- +..+. +...++...+-.. + .+ ..|..++ ..-|..+++.+-+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg-~ge~~-aL~~lv~~~~p~~-----~-sv-~dG~t~s~e~t~lhYYlkv~rlle~ 995 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG-FGEGN-ALRKLVYFLLPKR-----F-SV-ADGKTPSEELTALHYYLKVVRLLEE 995 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc-cccHH-HHHHHHHHhcCCC-----C-ch-hcCCCCCchHHHHHHHHHHHHHHHH
Confidence 5778899999999999999998864 22222 3333333111000 0 00 0111111 1124556777778
Q ss_pred cCChhHHHHHHHHhhcCCCCcC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCC
Q 006396 76 QSRLQDAILFLQETAGKEFGPS---VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF----SYNILIHGLCIAGS 148 (647)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 148 (647)
.+..+.+.++...+++.-+..+ ..+++.+..-....|.+-+|...+ .+ .||.. ....++..++.+|.
T Consensus 996 hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivLfecg~ 1069 (1480)
T KOG4521|consen 996 HNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVLFECGE 1069 (1480)
T ss_pred hccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHHHhccc
Confidence 8888888888877766422222 225566666666777776665443 32 33433 34556666666666
Q ss_pred HH
Q 006396 149 ME 150 (647)
Q Consensus 149 ~~ 150 (647)
++
T Consensus 1070 l~ 1071 (1480)
T KOG4521|consen 1070 LE 1071 (1480)
T ss_pred hH
Confidence 54
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.72 E-value=1.7 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+|..++..+...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888899999999988888754
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.68 E-value=0.71 Score=25.46 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=8.7
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 006396 105 MSRYCKLGFAEVAKGLFCLML 125 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~ 125 (647)
+.++.+.|++++|.+.|++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 333334444444444444443
No 340
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.63 E-value=19 Score=31.82 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETK-----AI------GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYV 476 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (647)
.+...|...+++.+...+++++... |- ..-...|..-|+.|....+-.+-..++++.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 3444555555555555555554331 00 01123455556666666665666666665544
No 341
>PRK09687 putative lyase; Provisional
Probab=87.58 E-value=23 Score=32.58 Aligned_cols=188 Identities=12% Similarity=0.133 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCC
Q 006396 412 SAVTYTTFMNAYCEEGNI----QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKL-----QEAVQLLEDMYVIGVTPD 482 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 482 (647)
+...-...+.++...|+. .++...+..+... .|+...-...+.++...+.. ..+...+.... ..++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA---FDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh---hCCC
Confidence 444444444555555542 3455555544322 34444444444444433211 12222222222 1334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
..+-...+.++.+.++ ..+...+-.+++ .++..+-..-+.++...+ +...+...+..++. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4555555666655555 345555555554 234444444444444432 23345555555553 345556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
++.+.|+ ..|+..+-+.++.+ + .....+.++...|+- +|...+..+.+..
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~-----------------------~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~ 264 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG-----------------------T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF 264 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC-----------------------c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC
Confidence 6666666 34555555555433 1 223555666666663 5666666666543
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.29 E-value=8.3 Score=30.03 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 515 EPTSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++..+--.+.+++.++.+ ..+.+.+++.+.+.. +|+ ......++-++++.|++++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3444444455555555443 333455555555421 222 2244455555666666666666666555543
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=23 Score=35.56 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 006396 146 AGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQK 193 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (647)
.|+.+.|.++..+. .+..-|..|..+....+++..|.+.|..
T Consensus 650 lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred cCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHh
Confidence 44555544444333 1334455555555555555555554444
No 344
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.47 E-value=22 Score=31.16 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+++...|++-++++.-.+++... +.|..+|..-+.+....=+..+|..-|.++++..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344444555555555555555531 3344455555555555555555555555555543
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.07 E-value=1.1 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQ 87 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~ 87 (647)
...++..+...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555543
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.94 E-value=21 Score=30.41 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHH
Q 006396 145 IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK---GSDPDIVTYTVLICGYCQIGNVEE 221 (647)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 221 (647)
+.|+ +.|.+.|-.+...+.--++.....|+..|. ..+.+++..++-...+. +-.+|+..+.+|++.+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3444 567777777766654445555555555554 56777777777776654 235677778888888888888877
Q ss_pred HH
Q 006396 222 GL 223 (647)
Q Consensus 222 a~ 223 (647)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 347
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.87 E-value=0.19 Score=40.68 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 44455555666666666666654434456666666666666665566555554111 11122344445555555
Q ss_pred HHHHHHHHHHHHcCCccc----chhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 006396 570 HKAMTFFCQMVEKGFEIS----IRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDL 624 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (647)
++|.-++.++-...--.. ...+...+ ++.. -.++++.|..++..+...++.
T Consensus 87 ~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~-e~~~---~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 87 EEAVYLYSKLGNHDEALEILHKLKDYEEAI-EYAK---KVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHCCTTHTTCSSTSSSTHCSCCCT-TTGG---GCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHccHHHHH-HHHH---hcCcHHHHHHHHHHHHhcCcc
Confidence 555555554322110000 00000000 1111 124577888888888776653
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.66 E-value=49 Score=34.52 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=11.4
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 006396 279 LIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~ 299 (647)
|+..|...+++..|+.++-.+
T Consensus 511 La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHHHHHHccChHHHHHHHHhc
Confidence 555555555555555555444
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.34 E-value=34 Score=32.34 Aligned_cols=130 Identities=10% Similarity=-0.011 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA---EGDVHKAMTFF 576 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 576 (647)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++.....|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45566777777753 3457777777888888778888888888888752 3356677777665544 33577777777
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-----QEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.++++.--... ........-.++ ..++..+...+.++|..+.|..+++-+++.+.
T Consensus 126 ~~~l~~L~~~~--------~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRR--------SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhh--------ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 77764210000 000000001111 34555666778899999999999999999877
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.89 E-value=3.3 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=33.4
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 530 VNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQ 578 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (647)
...+.++|+..|+++++.-..+. ..++..++.+++..|++++++++--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888886422221 22667777888888888887766544
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.87 E-value=1.4 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..|..++..+...|++++|...++..++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4677889999999999999999999987543
No 352
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.84 E-value=33 Score=31.81 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 006396 431 RLLALLQEMETKAIGPTHVTYTV 453 (647)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~ 453 (647)
++.++++.+.+.|+++....|..
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHcCCccccccccH
Confidence 44455555555555444444433
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.79 E-value=69 Score=35.43 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAV--TYTTFMNAYCE 425 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 425 (647)
+....+.+...+++|.-.|+..-+ ....+.+|..+|+|++|..+..++.. .-+.. +-..|..-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHH
Confidence 333444445566666555554322 12345566666777777666655542 11111 12445555666
Q ss_pred cCCHHHHHHHHHHHHh
Q 006396 426 EGNIQRLLALLQEMET 441 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~ 441 (647)
.+++-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 6666666666655543
No 354
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.18 E-value=44 Score=32.71 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=29.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 215 QIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
..+.++...+.++.+...|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 45778888888888887776666666777777777776543
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.59 E-value=62 Score=33.97 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCccchHHHHHHHHh-
Q 006396 313 AILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI-SPSIVTFNSLIYGFCK- 390 (647)
Q Consensus 313 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~- 390 (647)
.....+.-.|+++.|.+.+-. ......+..++...+..|.-.+-.+... ..+..... .|.+.-+..++..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344555567777777777655 1112233444443333322211111111 22221110 1111446666766665
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 006396 391 --NGKVADARRLLDTIKLH 407 (647)
Q Consensus 391 --~~~~~~a~~~~~~~~~~ 407 (647)
..++..|.+++-.+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 45677777777666543
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=21 Score=31.14 Aligned_cols=114 Identities=7% Similarity=-0.134 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH-hHHHHHHHHHhcCChhhHHHH
Q 006396 42 RHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV-SLNAIMSRYCKLGFAEVAKGL 120 (647)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~a~~~ 120 (647)
.+++.|.+.|.+++...| ..+.-|+.-+-++++..+++.+..--.++++. .||.. ....+...+.....+++|+..
T Consensus 24 k~y~~ai~~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 356666666666665443 33344555666666777777776666666653 34433 444555556666667777766
Q ss_pred HHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 121 FCLMLK----YGLHPDAFSYNILIHGLCIAGSMEEALEFTND 158 (647)
Q Consensus 121 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (647)
+.+... ..+++.......|..+--..-...+..++.+.
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666532 22333344555555543333333344444433
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.29 E-value=6.5 Score=38.88 Aligned_cols=95 Identities=19% Similarity=0.101 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
+|...-.+...|+...|..++..+.. ..| .......|.....+.|-.-+|-.++.+.+... ...+-++..+.+++
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33333334456777777777776665 233 12233345555566666666777776666543 33445666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006396 564 CAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~ 583 (647)
....++++|++.|+.+.++.
T Consensus 687 l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcC
Confidence 77777777777777777665
No 358
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.26 E-value=39 Score=30.70 Aligned_cols=116 Identities=10% Similarity=0.124 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHh-cCC-hhhHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHH
Q 006396 148 SMEEALEFTNDMGR-HGVEPDAITYSILAKGFHL-LSQ-ISGAWKVIQKLLIK-GSDPDIVTYTVLICGYCQIGNVEEGL 223 (647)
Q Consensus 148 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 223 (647)
-..+|+.+|+...- ..+-.|..+...+++.... .+. ...-.++.+-+... +..++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666663211 1133466666677766665 222 22233444444322 45667778888888888888888888
Q ss_pred HHHHHHHhC-CCCcCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 224 KLREVMLSQ-GFKLNVIAYSVLLSSMCKSGRIDEALGLLYE 263 (647)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 263 (647)
++++..... +...|...|..+++.....|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888887766 5566888888888888888887766665554
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.13 E-value=39 Score=30.60 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
++....+.|..+|.+.+|.++.++++..+ |-+...+..+...|...||--+|..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld---------------------pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD---------------------PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC---------------------hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455566777777777777777777666 566666667777777777766665555544
No 360
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=13 Score=33.86 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 443 AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG---VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA 519 (647)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 519 (647)
|.+....+...++..-....+++.+...+-++.... ..++. +-..+++.+.+ =+.++++.++..-+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444455555666655555667777777777666421 11111 11223333333 35667777777777788888888
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+++.+++.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877777654
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.84 E-value=3.5 Score=26.13 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+....++-++.+.|++++|++..+.+++..|
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3566788899999999999999999999654
No 362
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.55 E-value=36 Score=29.87 Aligned_cols=62 Identities=10% Similarity=-0.088 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.+....++++..|++-++++....++...+ .+..+|..-+.+.+..=+.++|..=|..+++.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 345556677777888888887777776643 35667777677666666777777777777765
No 363
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.20 E-value=19 Score=35.88 Aligned_cols=145 Identities=14% Similarity=-0.035 Sum_probs=96.3
Q ss_pred cCHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccH---HHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHh
Q 006396 29 VSIQTYNSLLYNL-----RHTDIMWDLYDDIKVSETPRNVYTN---SIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVS 100 (647)
Q Consensus 29 ~~~~~~~~ll~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 100 (647)
|+..+...++.+. ..-+.+..+|.-+.. ++...| +..+-.....|+...|...+..+....+...-..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 5666666666522 233445555555544 333333 3333344578999999999888876544444446
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
...++....+.|....|-.++.+.+... ...+-++..+..++....+.+.|++.|+...+.. +.+...-+.|..+-+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 7778888888888888888888877765 4556677788888888889999999998887762 345555565554433
No 364
>PRK09687 putative lyase; Provisional
Probab=79.98 E-value=50 Score=30.44 Aligned_cols=123 Identities=19% Similarity=0.109 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK-DLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
+..+-...+.++.+.++ +++...+-.+.+ .++..+-...+.++...+ +...+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555555666666655 445555555554 334444444444444432 23345555555553 44556666666
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|+. +|+..+..+.+..
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~ 264 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF 264 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC
Confidence 77777776 34555555555432 1 234566777777775 5777777777643
No 365
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.43 E-value=18 Score=30.98 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
++.+.+.+..++++...++-.+.. +.+...-..+++.++-.|++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344444455555555444443331 223333344445555555555554444433
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.85 E-value=28 Score=31.31 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=53.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Q 006396 420 MNAYCEEGNIQRLLALLQEMETK--AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC--- 494 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 494 (647)
|++++..++|.+++...-+.-+. .++| .....-|-.|.+.+.+..+.++-.......-.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67777888888877654443322 2333 3344445567788888888888777776433334445777666665
Q ss_pred --hcCCHHHHHHHH
Q 006396 495 --KCKDLRKAFQLL 506 (647)
Q Consensus 495 --~~~~~~~A~~~~ 506 (647)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 367888887776
No 367
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.77 E-value=21 Score=25.90 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc-CHHhHHHHHHHHHhcCC
Q 006396 51 YDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGP-SVVSLNAIMSRYCKLGF 113 (647)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 113 (647)
++.....+| .|..+...++..+...|++++|++.+-.+++..... +...-..++..+.-.|.
T Consensus 11 l~~~~a~~P-~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 11 LEAALAANP-DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 333443333 566777777778888888888888777777654332 22344445555544444
No 368
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.65 E-value=12 Score=27.15 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
|.|......++..+...|++++|.+.+-.+++.+...
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 7889999999999999999999999999999876544
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.31 E-value=4.3 Score=37.20 Aligned_cols=120 Identities=14% Similarity=0.125 Sum_probs=86.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 537 (647)
...|.++.|++.+...+... ++....|..-.+++.+.+....|++=+...++ +.|| ..-|-.-..+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45788999999999998865 56666777777888899999999999888887 5565 33344444555667999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...+....+.++.+....| +-...-..+..++-...+++..+..
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHHh
Confidence 9999999987665544443 3344555566666666666665543
No 370
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.23 E-value=5.1 Score=25.41 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=25.4
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHH
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLL 38 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 38 (647)
|+.++.+.|++.+|....+.+++.. |+..-...+-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~e--P~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIE--PDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHT--TS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhC--CCcHHHHHHH
Confidence 6778899999999999999999874 6665444443
No 371
>PRK10941 hypothetical protein; Provisional
Probab=78.17 E-value=18 Score=32.89 Aligned_cols=63 Identities=11% Similarity=-0.012 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
...+-.+|.+.++++.|++..+.++... |.++.-+.-.+-.|.+.|.+..|..-++..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~---------------------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD---------------------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3456678999999999999999999987 8889999999999999999999999999988
Q ss_pred hCCC
Q 006396 636 KSGL 639 (647)
Q Consensus 636 ~~~~ 639 (647)
+.-|
T Consensus 243 ~~~P 246 (269)
T PRK10941 243 EQCP 246 (269)
T ss_pred HhCC
Confidence 7554
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.68 E-value=4 Score=21.65 Aligned_cols=27 Identities=4% Similarity=0.052 Sum_probs=15.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAG 91 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 91 (647)
.|..++..+...|++++|...|+....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555566666666666666665554
No 373
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.41 E-value=71 Score=30.77 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=61.2
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhc-------CCC------------------CcCHHh---HHHHHHHHHhcC
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAG-------KEF------------------GPSVVS---LNAIMSRYCKLG 112 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~------------------~~~~~~---~~~~~~~~~~~g 112 (647)
-...++..+..++..+|+.+.|.++.++++= ..+ .-|... ....+..+.++|
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG 117 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG 117 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence 6677888888888899998888888887631 111 012222 234444566677
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 006396 113 FAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC-IAGSMEEALEFTNDMG 160 (647)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 160 (647)
-+..|.++.+.+.......|+..-..+|+.|+ +.++++-.+++.+...
T Consensus 118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 77777777777766653335555555555553 5566666666665543
No 374
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.30 E-value=0.94 Score=36.61 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=47.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006396 209 LICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDK 288 (647)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (647)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666677777766554445666677777777776666666665511 11223445555556666
Q ss_pred HHHHHHHHHHH
Q 006396 289 VHKAIQLYNEM 299 (647)
Q Consensus 289 ~~~a~~~~~~~ 299 (647)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555543
No 375
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.25 E-value=25 Score=27.51 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
.+.++|..|..+|+..... .|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7888888888777655544 6677788888888888888888764
No 376
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.20 E-value=1e+02 Score=32.46 Aligned_cols=88 Identities=14% Similarity=0.055 Sum_probs=35.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh--
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA-IGPTHVTYTVVIKGLCK-- 460 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 460 (647)
....+.-.|+++.|.+.+-.. .+...+...+...+..|.-.+-..... ..+.... -.|....+..+|..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 345556678888888777651 122344444444443332221111111 2121110 01122556667777664
Q ss_pred -cCCHHHHHHHHHHHHH
Q 006396 461 -QWKLQEAVQLLEDMYV 476 (647)
Q Consensus 461 -~g~~~~a~~~~~~~~~ 476 (647)
..++.+|++.+--+..
T Consensus 339 ~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 339 EITDPREALQYLYLICL 355 (613)
T ss_dssp TTT-HHHHHHHHHGGGG
T ss_pred hccCHHHHHHHHHHHHH
Confidence 4567777777665554
No 377
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.46 E-value=63 Score=29.76 Aligned_cols=15 Identities=7% Similarity=-0.126 Sum_probs=8.7
Q ss_pred HHHHHHHHHhCCCCC
Q 006396 627 VFELAAVMIKSGLLP 641 (647)
Q Consensus 627 A~~~~~~~~~~~~~~ 641 (647)
|.+.+.++.+.+|..
T Consensus 381 AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 381 AVEAIHRAVEFNPHV 395 (556)
T ss_pred HHHHHHHHhhcCCCC
Confidence 556666666655543
No 378
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=76.21 E-value=41 Score=29.41 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCh-------hhHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 519 ATYNILIDGLCVNGDL-------KNADCLLVSLQEHNISL----T-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++..+.+.|...|+. ..|.+.|.+..+..-.| + ......++....+.|++++|.++|.+++..+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444555666666653 33555555555432221 1 2244456667777888888888888887654
No 379
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.00 E-value=96 Score=32.39 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCC
Q 006396 617 AFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+-.-++++.+|.+..+.|.+.++
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCC
Confidence 34446788888888888887653
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.38 E-value=60 Score=28.95 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCc---cchHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCH
Q 006396 358 NIGEAVQLYRQLIEKRISPSI---VTFNSLIYGFCKNGKVADARRLLDTIKLH---GL--EPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~ 429 (647)
.+++|+.-|.+.++....... .....++....+.+++++....+.++... .+ .-+..+.|.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 445555555555443221111 12223444555555555555555544321 00 22344455555544444443
Q ss_pred HHHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CC-------HHHHHHHHH
Q 006396 430 QRLLALL-------QEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT----PD-------QITYNTIIR 491 (647)
Q Consensus 430 ~~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~~ 491 (647)
+-....+ ++...... =..|-+-+...|...+.+.+-.++++++...... .| ...|..-+.
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRL--WFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERL--WFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred HHHHHHHHHHHHHHHhhhccee--eeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 3333333 22222110 1112245666677777888888888877653111 11 245666777
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH----HHHhhcCChhhHHHHHHHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWL-HNLEPTSATYNILI----DGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 545 (647)
.|...++-.+-..+++..+. ...-|.+.+...+- ....+.|++++|-.-|-++.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 88888888888888887765 22345555543332 22345678888765554444
No 381
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.81 E-value=1.2e+02 Score=32.04 Aligned_cols=192 Identities=16% Similarity=0.109 Sum_probs=91.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHH--HHHHcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 006396 389 CKNGKVADARRLLDTIKLHGL-EPS-----AVTYTTFMN--AYCEEGNIQRLLALLQ--------EMETKAIGPTHVTYT 452 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 452 (647)
.-.+++..+...++.+..... .|+ ...+..++. .+-..|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 347888888888888775321 111 122222222 2345789999999997 333444333333332
Q ss_pred HH--HHHHHhc--CCHHH--HHHHHHHHHHc-CCCC--CHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHh-C-CCCCC-
Q 006396 453 VV--IKGLCKQ--WKLQE--AVQLLEDMYVI-GVTP--DQITYNTI-IRSFCKCK--DLRKAFQLLNQMWL-H-NLEPT- 517 (647)
Q Consensus 453 ~l--~~~~~~~--g~~~~--a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~~--~~~~A~~~~~~~~~-~-~~~p~- 517 (647)
.+ +-.+... ....+ ..++++.+... .-.| +..++..+ +.++..-. ...++...+....+ . +-..+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 1111211 22222 56666655432 1122 22233333 33332111 12244444444333 1 11112
Q ss_pred ---HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC-CC--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 006396 518 ---SATYNILIDGLCVNGDLKNADCLLVSLQEHNI-SL--TKVAYTT-----IIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 518 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..+++.+...+. .|+..+............. .| ....|.. +...+...|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 223344444444 6777776666555442111 12 2335533 33457778999999988877654
No 382
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=74.70 E-value=29 Score=26.72 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 542 VSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+.+...++.|++.+....+++|.+.+|+..|.++++-+..+
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33334445556666666666666666666666666655543
No 383
>PRK12798 chemotaxis protein; Reviewed
Probab=73.97 E-value=89 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.|..+.+.-...|+.+-|.-.-+++...
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 5555666666666666666666655544
No 384
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.87 E-value=1.2e+02 Score=31.86 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGP-SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
+.-+.+.+.+++|..+-+.....-... -...+..++..+.-.|++++|-...-.|... +..-|...+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 556778888999988887665432111 2346777788888889999988888888743 55667666666666665
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (647)
... ++.-+.......+...|..++..+..
T Consensus 439 l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 443 33333332223456677777777765
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.52 E-value=60 Score=28.09 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT----KVAYTTIIK 561 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 561 (647)
+..++.+.+.+.+.+|+...+.-++.+ +.|..+-..+++.|+-.|+|++|..-++-.-+ +.|+ ...|..++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHHH
Confidence 444556667788888888888777742 33566666788888888888888887777665 3333 335555554
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.11 E-value=1.3e+02 Score=31.80 Aligned_cols=75 Identities=7% Similarity=-0.092 Sum_probs=34.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 006396 103 AIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 103 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (647)
.....+.+.+++......+ ... +.+.........+....|+.++|......+-..| ...+.....++..+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~----~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFS----PEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhc----CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3333444555555444421 111 3334344445555555666655555555554333 223444555555554444
Q ss_pred C
Q 006396 183 Q 183 (647)
Q Consensus 183 ~ 183 (647)
.
T Consensus 178 ~ 178 (644)
T PRK11619 178 K 178 (644)
T ss_pred C
Confidence 3
No 387
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.79 E-value=1e+02 Score=30.41 Aligned_cols=109 Identities=14% Similarity=-0.040 Sum_probs=71.6
Q ss_pred HHHhcCCHHHHHHHHHHHHh---CCC--CCC--H-HHHHHHHHHHhhcCChhhHHHHHHHHHH-------cCCCCCH---
Q 006396 492 SFCKCKDLRKAFQLLNQMWL---HNL--EPT--S-ATYNILIDGLCVNGDLKNADCLLVSLQE-------HNISLTK--- 553 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~---~~~--~p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--- 553 (647)
.+...|++.+|.+++...-- .|. .|. . ..||.|+-.+.+.|.+.-+..+|.+++. .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556888888777654321 121 121 1 2246666666777777777777777663 3544421
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC
Q 006396 554 -------VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG 621 (647)
Q Consensus 554 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (647)
.......-.+...|++-.|.+.|.+.+..- ..++..|..++.+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf---------------------h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF---------------------HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH---------------------hcCcHHHHHHHHHHHHH
Confidence 233445567889999999999999998763 67788999998888753
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.69 E-value=16 Score=25.40 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
++...+.++|+..|+++++.-.. +++ ..++..+..+|...|++.+++++.-.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~-------------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITD-------------------REDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCC-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778999999999999986511 222 34556677999999999998877544
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.43 E-value=1.3e+02 Score=31.40 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 98 VVSLNAIMSRYCKLGFAEVAKGLFCLM 124 (647)
Q Consensus 98 ~~~~~~~~~~~~~~g~~~~a~~~~~~~ 124 (647)
+..|. .+..+.-+|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44454 677788888888888887443
No 390
>PRK10941 hypothetical protein; Provisional
Probab=72.33 E-value=67 Score=29.28 Aligned_cols=61 Identities=13% Similarity=-0.023 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.+-.+|.+.++++.|.+..+.++... |.++.-+.--+-.|.+.|.+..|..-++..++.-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 344455666666666666666666532 2233345555555666666666666666665543
No 391
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.77 E-value=23 Score=25.92 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP----DQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+.|++..|.+.+.+..+... ....+. -..+...++......|++++|.+.++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~----------------~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAK----------------QSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHh----------------hcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5678999999888877765330 011111 134455677888899999999999999875
No 392
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.29 E-value=1.1e+02 Score=30.33 Aligned_cols=167 Identities=10% Similarity=0.105 Sum_probs=88.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006396 339 CIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT 418 (647)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (647)
.+.|....-+++..+..+-.+.-...+..+|+.-| -+-..+..++++|..+ ..++-..+|+++.+..+ .|...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34455666666777766666666777777776643 2445566666766666 45566666666665532 12222233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 006396 419 FMNAYCEEGNIQRLLALLQEMETKAIGP-----THVTYTVVIKGLCKQWKLQEAVQLLEDMYV-IGVTPDQITYNTIIRS 492 (647)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 492 (647)
+...| ..++.+.+...|..+...-++. -...|.-+...- ..+.+..+.+..++.. .|...-...+..+-.-
T Consensus 138 La~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 33333 3366666666666655432210 111333333211 2344555555555443 2333334445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006396 493 FCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~ 512 (647)
|....++.+|++++..+++.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 66666666666666666654
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.96 E-value=74 Score=28.77 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh-----cCCHHHHHHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK-----NGKVADARRLL 401 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 401 (647)
+.+...-|-.|.+.+++..+.++-...+...-.-+...|..++..|.. .|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344444455566666666666665555543222223335444444433 45666665554
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.95 E-value=12 Score=24.77 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...++++.+.. ..-|..-...++.++...|++++|.++++.+.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444443 123444555666777777777777777776654
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.72 E-value=84 Score=28.61 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
.....|..+|.+.+|.++-++.+..+ +.+...+-.|+..++..|+--.|.+.++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33445555555555555555555521 2244445555555555555555555544443
No 396
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.55 E-value=51 Score=25.98 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 480 TPDQITYNTIIRSFCKCK---DLRKAFQLLNQMWLHNLEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
.++..+--.+..+..+.. ++.+.+.+++.+.+. -.| .-.....|.-++.+.+++++++++.+.+++. .||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCcH
Confidence 566666667777777665 466788899998862 234 3555667778899999999999999999984 45443
No 397
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=70.43 E-value=1.5e+02 Score=31.48 Aligned_cols=97 Identities=9% Similarity=-0.112 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHH---hcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYC---KLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
...+..|+..+.+.|++++....=..|.+. .+.++..|...+.... ..++..++..+|++.+... -++..|.-.
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e~ 189 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEEV 189 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHHH
Confidence 345666788888899888776665555543 2345666666665443 3467778888888887653 333444444
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHhhC
Q 006396 140 IHGLC-------IAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 140 ~~~~~-------~~~~~~~a~~~~~~~~~~ 162 (647)
+.... +.++++..+.+|.+..+.
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhh
Confidence 43332 335677777788777553
No 398
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.23 E-value=1.4e+02 Score=31.05 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEME 440 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (647)
+.....-++..|.+.|-.+.+..+.+.+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455555555555555555555443
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=70.05 E-value=95 Score=28.93 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 536 (647)
-.+++..++++....+ .|.+......|.++-. .-++..-..+|+-+.. +.|++.+-.+-.-+.....-++.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHh
Confidence 3556666666666655 3666555555554431 1245555555555555 33432222222223333444555
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 537 ADCLLVSLQEHN-ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 537 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++...+.+.+.+ +.-....+..-...+.+.|+.++|...|++++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 555555555432 11111223333445556666666666666666543
No 400
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.95 E-value=1.5e+02 Score=31.13 Aligned_cols=119 Identities=17% Similarity=0.056 Sum_probs=57.3
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 424 CEEGNIQRLLALLQEMETKAIGPTHV--TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 501 (647)
..-|+-+.|..+.++|.... .|-.. -...+..+|+..|+.....+++.-.... ...|..-...+.-++.-..+++.
T Consensus 512 ~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhh
Confidence 34455556666666665432 11111 1123344556666666555555544432 23344444444444555566666
Q ss_pred HHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 502 AFQLLNQMWLHNLEPTSAT--YNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 502 A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
...+.+-+.++ ..|.+.. --+|+-+|+-.| ..+|..+++-|..
T Consensus 590 ~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 590 LPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred chHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 66666666553 2333222 223344444444 3556666666654
No 401
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=69.15 E-value=47 Score=25.91 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 006396 535 KNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFC 577 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 577 (647)
++..++|.-|..+|+-.... .|...+..+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44677888888777655544 56677777888888888888876
No 402
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.05 E-value=86 Score=28.07 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=59.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh-h
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK-CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK-N 536 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~ 536 (647)
.+......|+++.++.+..+ +.+-.+|.---..... ..++.+-++++.++.+.+ +.|-.+|..--......|++. .
T Consensus 54 ~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred hccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccc
Confidence 34445556666666665542 2222222211111111 123555556666665532 334445444333344445555 4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
-+++.+.|+..+ ..+-++|..--+++..-++++.-+.+..++++.+
T Consensus 132 ELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 132 ELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred hHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 555566665532 3445566555556655566666666666666655
No 403
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.78 E-value=7 Score=37.77 Aligned_cols=91 Identities=18% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEPTS-ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAE 566 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 566 (647)
-+..+...++++.|..++.++++ +.||- ..|..-..++.+.+++..|+.=+.++++.. |+ ...|..-+.++...
T Consensus 10 ean~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhH
Confidence 34556677889999999999998 67764 444444578889999999999988888843 44 33566666777778
Q ss_pred CCHHHHHHHHHHHHHcC
Q 006396 567 GDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~ 583 (647)
+.+.+|...|+......
T Consensus 86 ~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLA 102 (476)
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 88888888888877654
No 404
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.83 E-value=49 Score=24.74 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFC 122 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 122 (647)
..++|..+.+-+...+. -...+-...+..+.++|+|++| +.... ....||...|..+. -.+.|-.+.+...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 44555555555443221 1111112223345566666666 11111 12234444443332 335555555555555
Q ss_pred HHHhCC
Q 006396 123 LMLKYG 128 (647)
Q Consensus 123 ~~~~~~ 128 (647)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 554443
No 405
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.46 E-value=46 Score=25.71 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=25.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+..+....+-|++.....-+++|.+.+|+..|.++|+-+..
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444445566666666666777777777777776666554
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.86 E-value=1.3e+02 Score=29.33 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=38.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHV--TYTVVIKGLC--KQWKLQEAVQLLEDMYVI 477 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 477 (647)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ...++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788899999999998876 555444 3444555543 466788888888887654
No 407
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=66.81 E-value=1e+02 Score=28.14 Aligned_cols=133 Identities=13% Similarity=0.156 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHh-CCCCCCcccHHHHHHHHhh-cCC-HHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006396 289 VHKAIQLYNEMCS-KRISPNSFAHGAILLGLCE-KEM-ITEARMYFDSLIMS-NCIQDVVLYNIMIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 289 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (647)
+.+|+++|+.... ..+-.|..+...++..... .+. ...-.++.+-+... +..++..+...++..+++.++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555553211 1233345555555555544 111 11111222222221 235667777778888888888888888
Q ss_pred HHHHHHHC-CCCCCccchHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 006396 365 LYRQLIEK-RISPSIVTFNSLIYGFCKNGKVADARRLLDT-----IKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 365 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~ 421 (647)
.+...... ++..|...|..++......|+..-..++.++ +.+.++..+...-..+-.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 88877655 5566788888888888888887776666653 233445555544444433
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.76 E-value=39 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
....++......|++++|+..++++++.
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344566677778888888888888754
No 409
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.54 E-value=41 Score=31.09 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-HHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK-VAYTTI 559 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 559 (647)
..|.-=.+-|.+.+++..|...|.+.++.. -.| +...|+.-..+....|++..|+.-..+++. +.|+. ..+..-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhh
Confidence 355566677778888888888888887632 233 466677777777777888888888888877 34543 366666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+.++....++.+|..+.++....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 77788888888888888777653
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=66.48 E-value=14 Score=31.88 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
...+.|+.+.|.+++.+++... |.....|..++..-.++|+++.|.+.+++.++.++.
T Consensus 4 ~~~~~~D~~aaaely~qal~la---------------------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA---------------------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC---------------------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3457799999999999999876 677899999999999999999999999999997654
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.76 E-value=16 Score=35.50 Aligned_cols=100 Identities=11% Similarity=-0.081 Sum_probs=57.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
....++.|..++.++++..+ ..+..|..-..++.+.+++..|..-+..+++..+. -...|..-+.++.+.+.+.+|+.
T Consensus 16 ~~~~fd~avdlysKaI~ldp-nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDP-NCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred ccchHHHHHHHHHHHHhcCC-cceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHHHHH
Confidence 34566777777777766443 23333333445666777777777666666664422 12245555555666666667777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
.|+..... .|+..-+...+.-|
T Consensus 94 ~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 94 DLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHhhhc--CcCcHHHHHHHHHH
Confidence 66666654 55555555555544
No 412
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=64.84 E-value=92 Score=27.48 Aligned_cols=33 Identities=6% Similarity=-0.039 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH---------cCCCHHHHHHHHHHHHhCCCC
Q 006396 608 QEICEVMLIAFH---------QGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 608 ~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~ 640 (647)
...|...+..+. ..++...|...++++.+.+++
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 455666666663 456788999999999987654
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.62 E-value=1.2e+02 Score=28.12 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C-
Q 006396 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC-----K- 497 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~- 497 (647)
+...|...|+...+.|. ......+...|.. ..+..+|...++++.+.|..+.......+...|... -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 35556666665555442 1222223333332 236677777777777766433222233333333332 1
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 006396 498 -DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG----- 567 (647)
Q Consensus 498 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 567 (647)
+...|...+.++...+ ++.....+...|.. ..++++|..+|.+..+.|. ......+. .+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchh
Confidence 2346888888877755 44555555555543 3478889999998888763 34444444 555555
Q ss_pred ----------CHHHHHHHHHHHHHcC
Q 006396 568 ----------DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ----------~~~~A~~~~~~~~~~~ 583 (647)
+...|...+......+
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcC
Confidence 6666666666666655
No 414
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.27 E-value=1.9e+02 Score=30.36 Aligned_cols=176 Identities=12% Similarity=0.071 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHhh-cCCCCcCHHhHHHHHHHHHhc---------CC-
Q 006396 46 IMWDLYDDIKVSETPRN-VYTNSIVIDGLCQQSRLQDAILFLQETA-GKEFGPSVVSLNAIMSRYCKL---------GF- 113 (647)
Q Consensus 46 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------g~- 113 (647)
+.+...+.+.+....+. ..+-..+...|.-.|++++|+.+.-.+- ...+.++......++.-|... +.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNP 120 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 34444444444333233 2333556678889999999998776653 233444444444444333221 11
Q ss_pred ------hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhCCCCCChhhHHHHHHHHHhcCC-hh
Q 006396 114 ------AEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM-GRHGVEPDAITYSILAKGFHLLSQ-IS 185 (647)
Q Consensus 114 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-~~ 185 (647)
.++-..++++|.+.. .+..-|..+|.......++ .++++. .+... +....+.++.......+ -+
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kc--l~d~e~~~aiGia~E~~rl----d~ie~Ail~~d~--~~~~~~yll~l~~s~v~~~e 192 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKC--LDDNEYKQAIGIAFETRRL----DIIEEAILKSDS--VIGNLTYLLELLISLVNNRE 192 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHh--hhhhHHHHHHhHHhhhhhH----HHHHHHhccccc--cchHHHHHHHHHHHHHhhHH
Confidence 223344455555442 1111222222222222222 233332 22211 22233333333333222 23
Q ss_pred hHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 186 GAWKVIQKLLIK---GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 186 ~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
-..+++..+.+. ...|| |..+..+|.-..+.+.+.++++.+.+.
T Consensus 193 fR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 333444444332 34444 345667788889999999999998875
No 415
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=94 Score=28.98 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 460 KQWKLQEAVQLLEDMYVI---GVTPDQITY--NTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+.++.++|+++++++.+. .-.|+...| ..+.+++...||.+++.+.+.+..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344556666665555542 113333332 2333444455555555555555444
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.94 E-value=1.2e+02 Score=28.01 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006396 102 NAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF---SYNILIHGLCIAGSMEEALEFTNDMG 160 (647)
Q Consensus 102 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (647)
..+.-+..+.|+..+|.+.|+.+.+. .|-.. +...++.++....-+.+...++.+.-
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455678888888888777654 23222 23445666655555555555554443
No 417
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.79 E-value=17 Score=32.85 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=51.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
..+.|+.++|.++|+.++... |.++.+...++.......+.-+|-..|-+++...|.-.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala---------------------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA---------------------PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC---------------------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 456799999999999999987 78899999999998888899999999988887665544
Q ss_pred CCC
Q 006396 643 KFL 645 (647)
Q Consensus 643 ~~~ 645 (647)
..+
T Consensus 185 eAL 187 (472)
T KOG3824|consen 185 EAL 187 (472)
T ss_pred HHH
Confidence 443
No 418
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.46 E-value=1e+02 Score=27.02 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=46.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcC-C-----------CCcCHHhHHHHHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGK-E-----------FGPSVVSLNAIMSR 107 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~~~~~ 107 (647)
+..+-+...++.+-+..++++-......++ .+..+|+..+|+..++..... | -.|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeai--ifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAI--IFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHh--hhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 333444444455545555665555555554 356688888888777765431 0 12344444444443
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCC
Q 006396 108 YCKLGFAEVAKGLFCLMLKYGLHP 131 (647)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~ 131 (647)
|. .+++++|.+.+..+.+.|+.|
T Consensus 249 ~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 249 CL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HH-hccHHHHHHHHHHHHHcCCCH
Confidence 32 344555555555555555443
No 419
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.55 E-value=22 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHcC
Q 006396 567 GDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~ 583 (647)
|+.+.|..+|++++...
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 57889999999999865
No 420
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=61.63 E-value=1.1e+02 Score=27.38 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=14.3
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 006396 618 FHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~ 637 (647)
|--.|+.++|.++.+.+.+.
T Consensus 179 yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 179 YEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHTSS-HHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHH
Confidence 34579999999988887653
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.59 E-value=46 Score=28.57 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 514 LEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
..|++.++..++.++...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666666666666655
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.12 E-value=1.3e+02 Score=27.07 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=34.3
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhC-----CC---Cc-CHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKEL-----DL---KV-SIQTYNSLLYNLRHTDIMWDLYDDIKVSET 59 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~-~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 59 (647)
++++|+-.|+..+|+.-|+.-+.. +. .+ ...-+...+.+ .+...-++++.+...++
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~sr--q~~~fAeL~~~~~~~~l 80 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESR--QYQVFAELLEEAPISGL 80 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHH--HHHHHHHHHHhcccccC
Confidence 467888899999999888876654 11 11 33334455543 35566667777664443
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.05 E-value=51 Score=28.24 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.|++..+..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 477777777777777778878887777777654
No 424
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.26 E-value=32 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHH--HHHh
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAA--VMIK 636 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~--~~~~ 636 (647)
+.+..++-.+..+|++++|..++. -+..
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ 31 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCA 31 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456788899999999999999944 5443
No 425
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.96 E-value=77 Score=23.41 Aligned_cols=15 Identities=20% Similarity=-0.117 Sum_probs=7.0
Q ss_pred HHhcCChhhHHHHHH
Q 006396 108 YCKLGFAEVAKGLFC 122 (647)
Q Consensus 108 ~~~~g~~~~a~~~~~ 122 (647)
+..+|+|++|.++.+
T Consensus 49 LmNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 49 LMNRGDYQSALQLGN 63 (115)
T ss_pred HHccchHHHHHHhcC
Confidence 444455555544443
No 426
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.90 E-value=99 Score=29.68 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLH--NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+.-+...|..+|+++.|++.|.++... .....+.+|..++..-...|+|.....+..++.
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 444555566666666666666664442 111123444455555555566555555555444
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.88 E-value=31 Score=22.77 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
|....-.++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444455566666666666666655543
No 428
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.20 E-value=31 Score=19.09 Aligned_cols=24 Identities=4% Similarity=0.045 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTI 559 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l 559 (647)
++.|..+|++... +.|+..+|...
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHH
Confidence 4556666666655 34555555443
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.74 E-value=1e+02 Score=24.91 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=35.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006396 507 NQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD 568 (647)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 568 (647)
+.+.+.|+++++.= ..++..+...++.-.|.++++.+.+.+.+.+..|....+..+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33444555555332 24455666666667778888887776655555665555566665553
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.53 E-value=1.1e+02 Score=29.69 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=34.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHH--HhcCChhHHHHHHHHhhcC
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVY--TNSIVIDGL--CQQSRLQDAILFLQETAGK 92 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 92 (647)
+.+++..|.++|+.+... .+.+.. .+..+..+| ...-++.+|.+.++.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 778888888888888765 434433 334444444 3566777888888877653
No 431
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.56 E-value=27 Score=30.26 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=30.5
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.++.+.|.+++.++.+. .+-....|..+.....++|+.+.|.+.|++.++.+
T Consensus 6 ~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3455666666666666652 12233356666666666666666666666665543
No 432
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.16 E-value=1.8e+02 Score=26.48 Aligned_cols=198 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCcCHH-------hHHHHHHHHHhcCChhhHHHHH----HHHHhCCCCCCHHHHH
Q 006396 69 VIDGLCQQSRLQDAILFLQETAGKEFGPSVV-------SLNAIMSRYCKLGFAEVAKGLF----CLMLKYGLHPDAFSYN 137 (647)
Q Consensus 69 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~ 137 (647)
+++...+.+++++|+..|.+++..|...+.. +...+...|...|++..-.+.. +.|.....+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHH-HhcCCHHHHHHHHHHHhhCCCCCChhhHHH-----HHHHHHhcCChhhHHHHHHHHHhc----CCCCCcchHH
Q 006396 138 ILIHGL-CIAGSMEEALEFTNDMGRHGVEPDAITYSI-----LAKGFHLLSQISGAWKVIQKLLIK----GSDPDIVTYT 207 (647)
Q Consensus 138 ~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 207 (647)
.++..+ .....++.-.++.....+....-....... ++..+.+.|.+..|+.++..+... .-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred HHHH-HHHhcCChHHHHHHHHHHHhCC----CCcCcccHHHHHHHHHhcCC--hhHHHHHHHHHHH
Q 006396 208 VLIC-GYCQIGNVEEGLKLREVMLSQG----FKLNVIAYSVLLSSMCKSGR--IDEALGLLYEMEA 266 (647)
Q Consensus 208 ~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~ 266 (647)
.+-+ +|....++.++..-+-...... .+|....--.++.+...+.+ +..|...|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
No 433
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.03 E-value=53 Score=20.30 Aligned_cols=34 Identities=12% Similarity=0.363 Sum_probs=22.0
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLY 39 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 39 (647)
..+.|-..++.+.++++.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777776666666665554
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.67 E-value=1.1e+02 Score=23.95 Aligned_cols=83 Identities=13% Similarity=0.025 Sum_probs=51.5
Q ss_pred hcCChhhHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC
Q 006396 530 VNGDLKNADCLLVSLQEH-----NISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF 604 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (647)
..+.-..-..++++.... ....|.. |..+--.|...- ..+.++|+.|...++ .
T Consensus 38 ~~~~~~~L~~lLer~~~~f~~~~~Y~nD~R-ylkiWi~ya~~~--~~~~~if~~l~~~~I-------------------G 95 (126)
T PF08311_consen 38 SGGKQSGLLELLERCIRKFKDDERYKNDER-YLKIWIKYADLS--SDPREIFKFLYSKGI-------------------G 95 (126)
T ss_dssp TCCCCHHHHHHHHHHHHHHTTSGGGTT-HH-HHHHHHHHHTTB--SHHHHHHHHHHHHTT-------------------S
T ss_pred CCCchhHHHHHHHHHHHHHhhhHhhcCCHH-HHHHHHHHHHHc--cCHHHHHHHHHHcCc-------------------c
Confidence 334445555566665542 1122332 333322333322 288899999988772 1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
..-...|...+..+...|++++|.++++..
T Consensus 96 ~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 96 TKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp TTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344788899999999999999999999874
No 435
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.49 E-value=3.4e+02 Score=29.46 Aligned_cols=90 Identities=20% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCcC----HH---hHHHHHH-HHHhcCChhhHHHHHHHHHhCC----CCCCHHHHHHH
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGPS----VV---SLNAIMS-RYCKLGFAEVAKGLFCLMLKYG----LHPDAFSYNIL 139 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~---~~~~~~~-~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l 139 (647)
....++++.+|..+..+....-..|+ .. .+..+-. .....|+++.+..+.+.....- ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34455666666666665533211111 11 1222211 2234566666666666555431 11223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
..+..-.|++++|..+.....+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHH
Confidence 4444556666666655555443
No 436
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.22 E-value=54 Score=23.97 Aligned_cols=33 Identities=3% Similarity=-0.127 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 604 FPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+..+....+|+-.|.+.|+-+.|.+-|+.-..
T Consensus 68 ~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 68 GAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred CCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 344456777889999999999999998887554
No 437
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.80 E-value=2.8e+02 Score=28.31 Aligned_cols=154 Identities=17% Similarity=0.060 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHhCC-----------CCCCcccHHHHHHHHHhcCChhHHHHHHHHhh-------cCCCCc--------
Q 006396 43 HTDIMWDLYDDIKVSE-----------TPRNVYTNSIVIDGLCQQSRLQDAILFLQETA-------GKEFGP-------- 96 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~-------- 96 (647)
.+++|..-|.-+...- .|-...+...+..++..+|+.+-|.++.++.+ ...+.|
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 4566666666554311 12344566677788889999888877666542 211111
Q ss_pred -----CHHh---HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhC---CC
Q 006396 97 -----SVVS---LNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC-IAGSMEEALEFTNDMGRH---GV 164 (647)
Q Consensus 97 -----~~~~---~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~ 164 (647)
|... ....+..+.+.|-+..|.++...+.+....-|+.....+|..|+ +..+|.-.++++++.... ..
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 2222 23445566778888888888888887754446666677777764 566777777777666433 23
Q ss_pred CCChhhHHHHHHHHHhcCC---hhhHHHHHHHHHh
Q 006396 165 EPDAITYSILAKGFHLLSQ---ISGAWKVIQKLLI 196 (647)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 196 (647)
-|+-..-.+|+..|.+... -..|...+.++..
T Consensus 413 ~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 413 LPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred cCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 3454444455555555444 2334444444443
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.40 E-value=19 Score=28.12 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006396 147 GSMEEALEFTNDMGRHGVEPDAITYSILA 175 (647)
Q Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (647)
|.-.+|..+|+.|++.|-+|| .|+.|+
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll 135 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALL 135 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHH
Confidence 444455555555555555554 344444
No 439
>PF13934 ELYS: Nuclear pore complex assembly
Probab=50.75 E-value=1.8e+02 Score=25.78 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHH-----hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHH
Q 006396 31 IQTYNSLLY-----NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIM 105 (647)
Q Consensus 31 ~~~~~~ll~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 105 (647)
+.-+...+. ..++++.|.+++ ..+...+.....++.++..+|+...|..+++.+.. +..+......++
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p--~l~s~~~~~~~~ 148 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGP--PLSSPEALTLYF 148 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCC--CCCCHHHHHHHH
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHH
Q 006396 106 SRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC----IAGSMEEALEF 155 (647)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~ 155 (647)
.. ...+.+.+|...-+.... ......+..++..+. +.+..++-..+
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 440
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.24 E-value=2.6e+02 Score=27.44 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVT--PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN 513 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 513 (647)
..|+.-|...|+..+|...++++ |+| .....+.+++.+.-+.|+-...+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34556666777777777766654 322 234556667777777777666666666665544
No 441
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.11 E-value=35 Score=23.65 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHcC
Q 006396 569 VHKAMTFFCQMVEKG 583 (647)
Q Consensus 569 ~~~A~~~~~~~~~~~ 583 (647)
.++|+.+++++...+
T Consensus 3 l~kai~Lv~~A~~eD 17 (75)
T cd02680 3 LERAHFLVTQAFDED 17 (75)
T ss_pred HHHHHHHHHHHHHhh
Confidence 345555665555443
No 442
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=49.79 E-value=3.6e+02 Score=28.98 Aligned_cols=110 Identities=13% Similarity=0.013 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCChhhHHHHH
Q 006396 464 LQEAVQLLEDMYVIGVTPDQITYNTIIRSF-CKCKDLRKAFQLLNQMWLHNLEPTSA-TYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
+..|...|.........+...+.......+ ..+++.+.++.+|+.+...|. -+.. .|...+..-...|+...+..++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~-~~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG-GSIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc-chHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 344455444444321223333333333332 346788999999988877542 2333 5666666666778888888888
Q ss_pred HHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHH
Q 006396 542 VSLQEHNISLTKV--AYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 542 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 574 (647)
+.+...-..|+.. ++..+.+.-...|.++....
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~ 555 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDL 555 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhh
Confidence 8887654444322 33444444444566655443
No 443
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.50 E-value=75 Score=21.04 Aligned_cols=49 Identities=20% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH-----HhcCChhhHHHH
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY-----CKLGFAEVAKGL 120 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~a~~~ 120 (647)
.+...|++-+|-++++.+-.....+....+..+|... .+.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 4566777788888777775433333444444444432 355666666554
No 444
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.45 E-value=3.9e+02 Score=29.34 Aligned_cols=114 Identities=13% Similarity=0.111 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCcCcccHHH--
Q 006396 171 YSILAKGFHLLSQISGAWKVIQKLLIKGSDPD---IVTYTVLICGYCQIGNV--EEGLKLREVMLSQGFKLNVIAYSV-- 243 (647)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 243 (647)
|..|+..|...|+.++|++++.+.......-| ...+..++..+...+.. +-..+.-++....+.......+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 56677777777777777777777665310001 11223344444444443 555555555554432211112211
Q ss_pred ----------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006396 244 ----------LLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLC 284 (647)
Q Consensus 244 ----------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (647)
.+-.|......+.+...++.+....-.++....+.++..|+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11223344445555555555554433444455555555554
No 445
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=48.72 E-value=4.3e+02 Score=29.62 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=124.3
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH
Q 006396 95 GPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSIL 174 (647)
Q Consensus 95 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 174 (647)
.+++.+-...+..+.+.+..+ +...+..++. .++..+-...+.++.+.+........+..+... +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 356666777777777776544 4444445553 344444444444444432211122233333322 455555555
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCCh
Q 006396 175 AKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRI 254 (647)
Q Consensus 175 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 254 (647)
+..+...+..+ ...++. ... .+|...-...+.++...+..+. +..... .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55555433211 122222 222 3355445555566655544332 222222 24556666666666666654
Q ss_pred hH-HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHH
Q 006396 255 DE-ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDS 333 (647)
Q Consensus 255 ~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 333 (647)
+. +...+..+.. .+|...-...+.++...|..+.+...+..+.+. ++..+-...+.++...+. .++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 3344444443 346666667777777777655554444444432 344445555566655554 334444444
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 334 LIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE 371 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 371 (647)
+.+ .++..+-...+.++.+.+....+...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 443 35666666667777665434456666666655
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.27 E-value=2e+02 Score=25.67 Aligned_cols=56 Identities=13% Similarity=0.050 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE-EGNIQRLLALLQEM 439 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 439 (647)
++..+-+.++++++...+.++...+...+..-.+.+..+|-. .|....+++++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 344445555666666666665555444444444444444422 23333444444443
No 447
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.25 E-value=2.4e+02 Score=30.50 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEA 152 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 152 (647)
++..|+.+.|++...+.- +...|..++....++|+.+-|...|++... |+.|--.|.-.|+.++.
T Consensus 653 aLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 556777777776665443 455677777777778887777777766542 34444445556777766
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 153 LEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
.++.+-.... .|..+ ......-.|++++-.++++.. |.. +..|. ....+|.-++|.++.++..+.
T Consensus 718 ~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~---g~~--~layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 718 SKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENG---GQL--PLAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhc---Ccc--cHHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 6665554322 12211 122223356666666655542 111 11121 123456667777777777654
No 448
>PRK09857 putative transposase; Provisional
Probab=47.86 E-value=1.7e+02 Score=27.29 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=26.9
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...++.++..++++.+.+. .+.......+++.-+...|.-++++++.++|+..|
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445555555555555443 23333344455555555555555555555555554
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.70 E-value=2.2e+02 Score=25.93 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 131 PDAFSYNILIHGLCIAGSMEEALEFT 156 (647)
Q Consensus 131 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (647)
.++.....+...|.+.+++.+|+.-|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35566677777777777777776554
No 450
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.55 E-value=48 Score=19.28 Aligned_cols=28 Identities=4% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+|..|+..-...+++++|.+=++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678899999999999999999998874
No 451
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.71 E-value=1.3e+02 Score=22.85 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHH--hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006396 34 YNSLLY--NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAG 91 (647)
Q Consensus 34 ~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 91 (647)
...+++ +..+++...+.+++-. -|..++..|...|..++|.+++.+...
T Consensus 17 l~~llr~~N~C~~~~~e~~L~~~~---------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 17 LGPLLRLPNYCDLEEVEEVLKEHG---------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHccCCcCCHHHHHHHHHHcC---------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344444 5556666666553321 367777777788888888887777665
No 452
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.35 E-value=25 Score=27.53 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=21.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006396 248 MCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRG 282 (647)
Q Consensus 248 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (647)
....|.-..|..+|++|.+.|-+|| .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3344666677888888888877776 45565544
No 453
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.84 E-value=1.2e+02 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG 112 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 112 (647)
-..++..+...++.-.|.++|+.+.+.++..+..|.+..+..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444555555555555555555555555555555555555555554
No 454
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.43 E-value=1.3e+02 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=11.4
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 006396 246 SSMCKSGRIDEALGLLYEMEA 266 (647)
Q Consensus 246 ~~~~~~g~~~~a~~~~~~~~~ 266 (647)
-.|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345555555555555555544
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.18 E-value=1.2e+02 Score=27.41 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEH----N-ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..+...|...|++++|.++|+.+... | ..+...+...+..++...|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666666666666666666421 1 1122334555566666667766666554433
No 456
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=44.32 E-value=4.4e+02 Score=28.48 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 006396 242 SVLLSSMCKSGRIDEALGLLYEMEA 266 (647)
Q Consensus 242 ~~l~~~~~~~g~~~~a~~~~~~~~~ 266 (647)
-.++..+.++|+.+.|.+++++...
T Consensus 329 W~~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 329 WPLVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 3466677788888888888888765
No 457
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.16 E-value=5.1e+02 Score=29.10 Aligned_cols=154 Identities=7% Similarity=0.041 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK-AFQLLNQMWLHNLEPTSATYNIL 524 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~p~~~~~~~l 524 (647)
++...-...+.++.+.+..+. +..+. ..++..+-...+.++...+..+. +...+..+.. .+++..-...
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA 795 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAA 795 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHH
Confidence 444444455555555443321 11221 24555555566666666554332 3344445443 4566676777
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF 604 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (647)
+.++...|..+.+...+..+++ .++..+-...+.++...+. +++...+..+++
T Consensus 796 ~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~----------------------- 848 (897)
T PRK13800 796 LAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT----------------------- 848 (897)
T ss_pred HHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc-----------------------
Confidence 7777777776555455555553 3455566666777777665 345555555553
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.|+...-...+.++.+.+....+...+..+++
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 35666777777777775334566667766665
No 458
>PRK12798 chemotaxis protein; Reviewed
Probab=44.02 E-value=3.2e+02 Score=26.72 Aligned_cols=224 Identities=12% Similarity=-0.027 Sum_probs=120.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH-HhcCChhhHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY-CKLGFAEVAK 118 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~a~ 118 (647)
.-|++.....++..-.. ++...-..-+..-.-.|+..++...+..+.....++....+..++.+- ....++..|+
T Consensus 93 SGGnP~vlr~L~~~d~~----~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al 168 (421)
T PRK12798 93 SGGNPATLRKLLARDKL----GNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATAL 168 (421)
T ss_pred cCCCHHHHHHHHHcCCC----ChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHH
Confidence 66777766665544322 333222222222335788888888888887665566666666666654 4456788888
Q ss_pred HHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhh--H-HHHHHHHHhcCChhhHHHHH
Q 006396 119 GLFCLMLKYGLHPDA----FSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAIT--Y-SILAKGFHLLSQISGAWKVI 191 (647)
Q Consensus 119 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~~~~~~a~~~~ 191 (647)
.+|+.+.=. -|.. .....-+......|+.+++..+-...... +..++.. | ......+.+..+-..- +.+
T Consensus 169 ~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l 244 (421)
T PRK12798 169 KLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARL 244 (421)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHH
Confidence 888887644 3332 23444455556778877766554444332 2222222 2 2222233333321111 123
Q ss_pred HHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHH-----HhcCChhHHHHHHHHHH
Q 006396 192 QKLLIK-GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSM-----CKSGRIDEALGLLYEME 265 (647)
Q Consensus 192 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~ 265 (647)
..+... ....-...|..+.+.-.-.|+.+-|.-.-++.....-. ...-...+..| .-..+++++.+.+..+.
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~--~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP--DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC--CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 333322 11112446777788888888888888777777665322 22222222222 23456777887777776
Q ss_pred HCCCCCCH
Q 006396 266 AVGLKPDL 273 (647)
Q Consensus 266 ~~~~~~~~ 273 (647)
...+.+..
T Consensus 323 ~~~L~~~D 330 (421)
T PRK12798 323 RDKLSERD 330 (421)
T ss_pred hhhCChhh
Confidence 66555443
No 459
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=43.68 E-value=2.8e+02 Score=26.05 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNIL 524 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 524 (647)
..|.-=.+-|.+..++..|...|.+-++... .| +.+.|+.-..+-.-.|++..|+.=-...+. +.|+ ...+..=
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhh
Confidence 3555666678888899999999998887532 23 345666666666678999999988888887 5664 4555555
Q ss_pred HHHHhhcCChhhHHHHHHHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
..++....++++|..+.++...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 5677777888888888777654
No 460
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.33 E-value=1.2e+02 Score=21.75 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=16.4
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 110 KLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (647)
..|+.+.|.+++..+. + .|+ .|..++.++...|.-
T Consensus 48 ~~g~~~~ar~LL~~L~-r--g~~--aF~~Fl~aLreT~~~ 82 (88)
T cd08819 48 NHGNESGARELLKRIV-Q--KEG--WFSKFLQALRETEHH 82 (88)
T ss_pred ccCcHHHHHHHHHHhc-c--CCc--HHHHHHHHHHHcCch
Confidence 3455555555555554 3 222 344455555444443
No 461
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.13 E-value=5.4e+02 Score=29.12 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
-|..+++.+-+.+-.+.+.++...+++. ++++ ..+++.+..-....|.+-+|...+-+-.. ..........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 4667788888888899999988888873 2332 45567777777788888877665543221 111123567778
Q ss_pred HHHHhcCCHHH
Q 006396 561 KAHCAEGDVHK 571 (647)
Q Consensus 561 ~~~~~~g~~~~ 571 (647)
-.++..|.++.
T Consensus 1062 ivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1062 IVLFECGELEA 1072 (1480)
T ss_pred HHHHhccchHH
Confidence 88888887754
No 462
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=42.59 E-value=3.5e+02 Score=26.82 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=15.3
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006396 564 CAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~ 583 (647)
....++..|+++|+++.+.+
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 44568888888888888765
No 463
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.28 E-value=5e+02 Score=28.24 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=28.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCH--HhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSV--VSLNAIMSRYCKLGFAEVAKGLFCLM 124 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~a~~~~~~~ 124 (647)
=..|...|++++|.++.+.- |+. .++..-+..|.+.+++..|-+++.++
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34566667777666654432 221 24555555666666777777776665
No 464
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=41.08 E-value=3.6e+02 Score=26.52 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
..|+.-|...|++.+|.++.+++- ++. ....+.+++.+..+.|+-...+.+++.....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456666777777777777776652 221 35566677777777776665566665555444
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.90 E-value=1.6e+02 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006396 386 YGFCKNGKVADARRLLDTIKL 406 (647)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~ 406 (647)
..|.+.|.+++|.++++....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345556666666666665554
No 466
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=4.2e+02 Score=27.18 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=59.6
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCC
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH-CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNG 603 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (647)
+..+.+.|-+..|.++.+-+......-|+.....++..| .++.+++--+++++.....+. .-
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~-----------------l~ 411 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK-----------------LS 411 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-----------------Hh
Confidence 344567888999999888888854333566666667665 456778877777777654330 11
Q ss_pred CCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhC
Q 006396 604 FPPDQEICEVMLIAFHQGGD---LGSVFELAAVMIKS 637 (647)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 637 (647)
.-|+...-.+++..|.+... -..|...+.++++.
T Consensus 412 ~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 412 QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 24555555566666666544 34555555555543
No 467
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.48 E-value=2.9e+02 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=10.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALG 259 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~ 259 (647)
++.....+...+.+.|++.+|+.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHH
Confidence 34445555555555555555443
No 468
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=40.13 E-value=2.7e+02 Score=24.71 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.-+..|...-++.-|....+++.+ |- .+-.++ --|.+..+.+--.++.+-....+++.+...+..++ +...|
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE----PI-QSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE----PI-QSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh----hH-HhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 344455555555555555555543 21 111111 12334443333333444444445555555555443 55678
Q ss_pred CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 568 DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
|...|+..++.-..---..+. +...+---.|.+.....++..|.+. ++++|.+++..+-+.|+.|+..
T Consensus 207 DMRQalNnLQst~~g~g~Vn~--------enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQ--------ENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hHHHHHHHHHHHhccccccch--------hhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHHH
Confidence 888888887766542100000 0111111367888888888777654 8999999999999999988643
No 469
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.63 E-value=3.6e+02 Score=26.09 Aligned_cols=140 Identities=10% Similarity=-0.021 Sum_probs=82.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCChhhHHHHHHHHHHcC------CCCCHHHHHHHHHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLC-VNGDLKNADCLLVSLQEHN------ISLTKVAYTTIIKA 562 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~ 562 (647)
+....+.|-+..|.++.+-+...+..-|+......++.|+ +.++++--+++++...... .-|+ ..| +.+-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~-S~aLA 187 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAF-SIALA 187 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHH-HHHHH
Confidence 4456788899999999998888543336666666777766 6677877777777765421 1122 223 33345
Q ss_pred HHhcCCH---------------HHHHHHHHHHHHcCCcccchhhhhHHHHhh----------------hhCCCCCCHHHH
Q 006396 563 HCAEGDV---------------HKAMTFFCQMVEKGFEISIRDYTKSFFCMM----------------LSNGFPPDQEIC 611 (647)
Q Consensus 563 ~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 611 (647)
+...++. ++|...+.+++..- +.....+++.+ ...+..+.....
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f-----P~vl~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILRF-----PWVLVPLLDKLGISPDSSVSNHPHFSPSSWSSEPPSDSL 262 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHHh-----HHHHHHHHHHhccccchhhhcCCCCcccccccCCchhHH
Confidence 5555555 78888877776532 11111111111 001112233567
Q ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHh
Q 006396 612 EVMLIAFHQGG----DLGSVFELAAVMIK 636 (647)
Q Consensus 612 ~~l~~~~~~~g----~~~~A~~~~~~~~~ 636 (647)
..++.+|.... +..++..++++...
T Consensus 263 ~ll~~lYv~R~~~LWk~~~~l~wL~~~~~ 291 (360)
T PF04910_consen 263 KLLTELYVERSKDLWKEPEVLSWLEDNAE 291 (360)
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Confidence 78888888653 23678888887754
No 470
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.49 E-value=3.9e+02 Score=26.41 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=7.5
Q ss_pred HHHHhcCCHHHHHHHH
Q 006396 141 HGLCIAGSMEEALEFT 156 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~ 156 (647)
...+..|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3334556655444443
No 471
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.29 E-value=3.7e+02 Score=26.13 Aligned_cols=161 Identities=10% Similarity=0.099 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CccchHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCCCH
Q 006396 346 YNIMIDGYVKLGNIGEAVQLYRQLIEKRISP---SIVTFNSLIYGFCKNGKVADARRLLDTIKLH---------GLEPSA 413 (647)
Q Consensus 346 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 413 (647)
+.-+...|...|+++.|++.|.+..+- .+. ....+..+|..-.-.++|.....+..+..+. .+++..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 444555666667777777766664332 111 1222333344444456665555555544432 123334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHH
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETK------AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYV-IGVTPDQITY 486 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~ 486 (647)
..+..+.....+ ++..|...|-..... -+.|...+....+.+++.-++-+--+.+.....- .-....+..+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 444444444333 555555554333211 1234333333333444433332222222111110 0012233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
..+..-| .+++..++++++++..
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhcc
Confidence 3333333 2678888888888754
No 472
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=39.17 E-value=1.6e+02 Score=21.89 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHH
Q 006396 464 LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVS 543 (647)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (647)
.++|..+-+.+...+-. ...+-..-+......|++++|..+.+.. ..||...|.+|. -.+.|-.+++...+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 45555555555443211 1111111223445667777777766654 356666665553 3355666666666666
Q ss_pred HHHcC
Q 006396 544 LQEHN 548 (647)
Q Consensus 544 ~~~~~ 548 (647)
+...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=38.60 E-value=85 Score=28.81 Aligned_cols=81 Identities=10% Similarity=-0.061 Sum_probs=56.0
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH
Q 006396 94 FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNI-LIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYS 172 (647)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (647)
+..|+..|...+.--.+.|.+.+...+|.+.++.+ |.|+..|-. -..-+...++++.++.+|....+.+ +.++..|-
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 34577788888887778888888888998888875 556655543 2234556788888888888887764 33555555
Q ss_pred HHHH
Q 006396 173 ILAK 176 (647)
Q Consensus 173 ~l~~ 176 (647)
...+
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 4433
No 474
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.37 E-value=84 Score=28.88 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=22.3
Q ss_pred cCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 006396 96 PSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLH 130 (647)
Q Consensus 96 ~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 130 (647)
|+.. .|+..|....+.||+++|+++++++.+.|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444 3446667777777777777777777766643
No 475
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.15 E-value=98 Score=19.12 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=11.5
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHH
Q 006396 111 LGFAEVAKGLFCLMLKYGLHPDAFSYN 137 (647)
Q Consensus 111 ~g~~~~a~~~~~~~~~~~~~~~~~~~~ 137 (647)
.|-..++..++++|.+.|+.-+...+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 344444444444444444443433333
No 476
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.80 E-value=2.2e+02 Score=26.39 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 225 LREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
+|+.+...++.|....+..+.-.+.+.=.+.+.+.+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444444444444444444444444444444444444
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.82 E-value=1.7e+02 Score=21.11 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHHH
Q 006396 217 GNVEEGLKLREVML 230 (647)
Q Consensus 217 ~~~~~a~~~~~~~~ 230 (647)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 478
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=34.83 E-value=83 Score=28.88 Aligned_cols=82 Identities=4% Similarity=-0.031 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 514 LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTT-IIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
..-|+..|...+.--.+.|-+.+...++.+..... |.|...|.. ..--+...++++.++.+|.+.++.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N--------- 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN--------- 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC---------
Confidence 34467777766665566788888999999998863 556666644 3344667799999999999998887
Q ss_pred hHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 593 KSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
+..+.+|....+.
T Consensus 173 ------------~~~p~iw~eyfr~ 185 (435)
T COG5191 173 ------------SRSPRIWIEYFRM 185 (435)
T ss_pred ------------CCCchHHHHHHHH
Confidence 7778888766543
No 479
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.62 E-value=4.6e+02 Score=25.87 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 006396 501 KAFQLLNQMWL 511 (647)
Q Consensus 501 ~A~~~~~~~~~ 511 (647)
++.+-++.|..
T Consensus 298 ~C~~ei~~mk~ 308 (413)
T PHA02875 298 KCIIELRRIKS 308 (413)
T ss_pred HHHHHHHHHHh
Confidence 34445555554
No 480
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.46 E-value=82 Score=21.96 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=9.1
Q ss_pred cCCCHHHHHHHHHHHH
Q 006396 620 QGGDLGSVFELAAVMI 635 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~ 635 (647)
+.|++++|...|+..+
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 18 QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HccCHHHHHHHHHHHH
Confidence 5566666665555543
No 481
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=34.40 E-value=94 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=28.1
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCC-CCcCHHHHHHHHH
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELD-LKVSIQTYNSLLY 39 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~ 39 (647)
|+..|.++|.+++|.+++..+.+.. ..|+......+..
T Consensus 112 Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ 150 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQ 150 (338)
T ss_pred HHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHH
Confidence 6788999999999999998887663 2366555555554
No 482
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=34.33 E-value=2e+02 Score=21.68 Aligned_cols=81 Identities=15% Similarity=-0.033 Sum_probs=39.3
Q ss_pred cCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 76 QSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEF 155 (647)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (647)
....++|..+.+.....+. ....+...-+.++..+|+|++|+ ..-. ....||...|.+|.. .+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 3345666666666655432 12223333344566777777771 1111 122566666655533 356666666666
Q ss_pred HHHHhhCC
Q 006396 156 TNDMGRHG 163 (647)
Q Consensus 156 ~~~~~~~~ 163 (647)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66665543
No 483
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.30 E-value=77 Score=21.40 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=10.6
Q ss_pred cCCCHHHHHHHHHHHH
Q 006396 620 QGGDLGSVFELAAVMI 635 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~ 635 (647)
+.|++++|.+.+.+.+
T Consensus 17 ~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 17 EAGNYEEALELYKEAI 32 (69)
T ss_dssp HTTSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5677777776666654
No 484
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.26 E-value=4e+02 Score=25.03 Aligned_cols=65 Identities=14% Similarity=0.020 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH-HHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEPTSATYN-ILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
..+......|++.||.+.|.+.+.+..+ .|.+.|+..+. .++-.|....-..+-++..+.+.+.|
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 3455556667777777777666655443 23344433222 22223333333344444444455555
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.25 E-value=2.5e+02 Score=22.72 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=31.3
Q ss_pred hCCCCCCHHHHHHHHHHHhhc-CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 511 LHNLEPTSATYNILIDGLCVN-GDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 511 ~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
+.|++++..-. .++..+... ++.-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 10 ~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 10 KAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555543332 223333333 45667777777777665555666655556666665544
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.10 E-value=1.9e+02 Score=21.32 Aligned_cols=43 Identities=12% Similarity=-0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 503 FQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
.+.++++...+....+-....|.-.|...|+.+.|.+-|+.=.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3344444433322223333344555566666666655555443
No 487
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.38 E-value=95 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 479 (647)
..|..-.+.|+.++|+.+++++.+.|+
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444444444555555555555544443
No 488
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.07 E-value=5e+02 Score=25.77 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 006396 497 KDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~ 514 (647)
.+.+.|..++..+++.|.
T Consensus 244 sd~~aal~~l~~~l~~G~ 261 (413)
T PRK13342 244 SDPDAALYYLARMLEAGE 261 (413)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 344444444444444443
No 489
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.79 E-value=3.1e+02 Score=27.04 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
++...+..+.+.+++..|-.+-+++++.
T Consensus 302 aLr~AM~~~~K~KNf~tAa~FArRLLel 329 (422)
T PF06957_consen 302 ALRSAMSQAFKLKNFITAASFARRLLEL 329 (422)
T ss_dssp HHHHHHHHCCCTTBHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 4445555555666666666666666654
No 490
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.66 E-value=2.1e+02 Score=28.05 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-------CCcCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 205 TYTVLICGYCQIGNVEEGLKLREVMLSQG-------FKLNVIAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
+...|++.++-.||+..|+++++.+.-.. ..-...++..+.-+|.-.+++.+|.+.|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888877653211 11233456666667777777777777777654
No 491
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.57 E-value=1.5e+02 Score=19.63 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=7.1
Q ss_pred HhcCChhhHHHHHHHHH
Q 006396 7 SRTGMVHDAVFVIAKMK 23 (647)
Q Consensus 7 ~~~g~~~~A~~~~~~~~ 23 (647)
...|++-+|=++++.+=
T Consensus 10 ~n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELW 26 (62)
T ss_dssp HHTT-HHHHHHHHHHHC
T ss_pred HcCCCHHHhHHHHHHHH
Confidence 34444444444444433
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.53 E-value=1.4e+02 Score=22.72 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=30.3
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444555666677777877777665566666666666666666544
No 493
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.22 E-value=3.6e+02 Score=23.82 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=10.4
Q ss_pred HHHHhhcCChhhHHHHHHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+......|+.++|.+....+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhC
Confidence 333445555555555555443
No 494
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=31.98 E-value=4.2e+02 Score=24.60 Aligned_cols=67 Identities=9% Similarity=0.164 Sum_probs=32.9
Q ss_pred CChhhHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIV----TYTVLICGYCQIGNV-EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
..+++......+-.+..--|+.. .|..++++---+.+- --|.+.++++ ..|.-|+.+++..|+.+.
T Consensus 269 ~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHH
Confidence 34444444444433333334443 466666553333221 1233333333 346778888888887764
Q ss_pred H
Q 006396 257 A 257 (647)
Q Consensus 257 a 257 (647)
.
T Consensus 340 ~ 340 (412)
T KOG2297|consen 340 E 340 (412)
T ss_pred H
Confidence 4
No 495
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.98 E-value=4.2e+02 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006396 245 LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCS 301 (647)
Q Consensus 245 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (647)
+....+.++.....+.++.+.. ...-...+......|++..|++++.+..+
T Consensus 105 l~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 105 LRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3334444444444444444432 22233445555566666666666665543
No 496
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.82 E-value=1.2e+02 Score=20.30 Aligned_cols=51 Identities=4% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc
Q 006396 549 ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ 620 (647)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (647)
+.|....++.++....+-.-.++++.++.++...| .-+...|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g---------------------~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG---------------------SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------SS-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------------CCCHHHHHHHHHHHHH
No 497
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.05 E-value=7.7e+02 Score=27.32 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=66.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006396 275 TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV 354 (647)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (647)
-|..|+..|...|+.++|++++.+.....-..+... ...++...++++.. + .++....-... .+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~----------~~~~e~ii~YL~~l---~-~~~~~Li~~y~-~wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ----------LDGLEKIIEYLKKL---G-AENLDLILEYA-DWV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch----------hhhHHHHHHHHHHh---c-ccchhHHHHHh-hhh
Confidence 477778888888888888888887765310001000 00111122222221 1 11111111111 122
Q ss_pred hcCCHHHHHHHHHHH---HHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006396 355 KLGNIGEAVQLYRQL---IEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE 425 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (647)
-..+.+.+.++|..- ....+.+ ..+-.|......+-+..+++.+....-.++....+.++..|..
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~------~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISR------DDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccCchhheeeeeccChhhhccCCH------HHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 234555566665541 0011111 1234466778888889999988876556677777888877765
No 498
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=31.02 E-value=1e+02 Score=21.55 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.0
Q ss_pred CCCHHHHH
Q 006396 621 GGDLGSVF 628 (647)
Q Consensus 621 ~g~~~~A~ 628 (647)
.|++++|+
T Consensus 19 ~g~y~eAl 26 (77)
T cd02683 19 EGRFQEAL 26 (77)
T ss_pred hccHHHHH
Confidence 33333333
No 499
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=30.99 E-value=2.1e+02 Score=27.95 Aligned_cols=69 Identities=9% Similarity=0.135 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
.+...+++.++-.||+..|++.++.+.-.. .. ++. +-.+-...++..++=+|.-.+++.+|.+.+..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~-----~~----l~~----~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNK-----KG----LYT----KVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCccc-----ch----hhc----cCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888999999999999887653110 00 000 01233477889999999999999999999988
Q ss_pred HH
Q 006396 634 MI 635 (647)
Q Consensus 634 ~~ 635 (647)
++
T Consensus 190 iL 191 (404)
T PF10255_consen 190 IL 191 (404)
T ss_pred HH
Confidence 65
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.60 E-value=2.5e+02 Score=23.42 Aligned_cols=36 Identities=11% Similarity=-0.031 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC
Q 006396 77 SRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG 112 (647)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 112 (647)
++.-.|.++++.+.+.++..+..|.+..+..+.+.|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 333344444444444433334444444444444443
Done!