Query 006396
Match_columns 647
No_of_seqs 673 out of 3417
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 23:56:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-41 6.1E-46 352.2 39.3 507 75-619 65-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.6E-41 2.6E-45 347.5 42.0 496 108-640 63-582 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-28 1.5E-32 236.6 45.0 382 176-623 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-28 1.2E-32 237.3 41.5 378 2-426 5-386 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.8E-28 2.3E-32 237.6 24.8 201 365-565 12-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 6.3E-28 2.1E-32 237.8 22.8 204 82-285 9-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.1E-24 3.8E-29 221.6 43.0 458 63-583 6-479 (514)
8 2gw1_A Mitochondrial precursor 100.0 2.2E-25 7.6E-30 226.8 35.8 451 133-640 6-481 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.9E-23 6.5E-28 213.7 36.8 439 133-641 25-495 (537)
10 3fp2_A TPR repeat-containing p 99.9 4.8E-23 1.6E-27 210.8 39.0 432 63-511 25-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-22 3.9E-27 202.8 38.4 349 237-638 25-411 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 6.8E-22 2.3E-26 197.2 39.2 384 152-573 11-445 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 8.3E-20 2.8E-24 176.2 38.6 316 272-638 2-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.6E-20 2.9E-24 176.1 37.4 332 237-620 2-352 (359)
15 2xm6_A Protein corresponding t 99.9 4.7E-18 1.6E-22 170.6 47.7 352 202-583 38-433 (490)
16 2xm6_A Protein corresponding t 99.9 1.6E-17 5.5E-22 166.7 48.8 366 222-640 26-435 (490)
17 3hym_B Cell division cycle pro 99.9 1.7E-19 5.9E-24 171.6 32.8 294 305-625 19-322 (330)
18 1xi4_A Clathrin heavy chain; a 99.9 3E-16 1E-20 164.1 58.2 440 29-532 951-1415(1630)
19 1xi4_A Clathrin heavy chain; a 99.9 3E-16 1E-20 164.0 56.3 315 3-364 1056-1376(1630)
20 2ooe_A Cleavage stimulation fa 99.9 9.3E-18 3.2E-22 170.3 42.9 432 156-639 2-494 (530)
21 3hym_B Cell division cycle pro 99.9 3.8E-19 1.3E-23 169.3 30.7 273 341-639 20-301 (330)
22 2ooe_A Cleavage stimulation fa 99.9 2.3E-17 7.7E-22 167.4 43.1 435 51-547 2-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 4.5E-19 1.5E-23 171.6 23.8 318 282-635 34-357 (368)
24 4g1t_A Interferon-induced prot 99.8 7.7E-17 2.6E-21 161.6 35.2 383 203-639 51-461 (472)
25 4eqf_A PEX5-related protein; a 99.8 2.9E-18 9.8E-23 165.6 22.9 273 345-633 67-352 (365)
26 1fch_A Peroxisomal targeting s 99.8 5.6E-18 1.9E-22 163.9 25.0 230 100-334 66-311 (368)
27 3cv0_A Peroxisome targeting si 99.8 8.3E-18 2.8E-22 159.7 25.7 260 349-635 27-313 (327)
28 1b89_A Protein (clathrin heavy 99.8 2.6E-17 8.8E-22 154.0 26.7 291 31-365 6-304 (449)
29 3mkr_A Coatomer subunit epsilo 99.8 2.2E-17 7.4E-22 152.2 25.6 254 316-583 7-265 (291)
30 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.3E-22 161.0 23.1 279 61-368 63-352 (365)
31 1b89_A Protein (clathrin heavy 99.8 1.1E-16 3.9E-21 149.6 26.8 283 74-399 14-303 (449)
32 3mkr_A Coatomer subunit epsilo 99.8 1.5E-16 5.1E-21 146.5 27.4 256 280-554 6-269 (291)
33 4g1t_A Interferon-induced prot 99.8 3.5E-16 1.2E-20 156.8 32.4 387 164-583 47-460 (472)
34 3cv0_A Peroxisome targeting si 99.8 1.2E-16 4E-21 151.7 25.3 279 275-581 23-314 (327)
35 2pl2_A Hypothetical conserved 99.8 1.9E-16 6.4E-21 139.4 22.8 200 410-636 2-213 (217)
36 3e4b_A ALGK; tetratricopeptide 99.7 8.7E-16 3E-20 151.3 27.4 345 210-583 10-388 (452)
37 3uq3_A Heat shock protein STI1 99.7 2.2E-15 7.4E-20 137.5 24.7 225 343-637 5-236 (258)
38 2pl2_A Hypothetical conserved 99.7 9E-16 3.1E-20 135.0 19.5 199 60-264 2-211 (217)
39 3e4b_A ALGK; tetratricopeptide 99.7 6.2E-15 2.1E-19 145.2 26.7 347 243-638 8-388 (452)
40 1ouv_A Conserved hypothetical 99.7 9E-14 3.1E-18 127.7 32.2 218 383-638 11-252 (273)
41 3uq3_A Heat shock protein STI1 99.7 8.8E-15 3E-19 133.4 24.6 225 308-546 5-235 (258)
42 3u4t_A TPR repeat-containing p 99.7 2.2E-14 7.4E-19 131.9 26.8 252 345-622 5-269 (272)
43 2ho1_A Type 4 fimbrial biogene 99.7 2.9E-14 9.8E-19 129.4 27.1 203 413-639 37-240 (252)
44 3u4t_A TPR repeat-containing p 99.7 2.6E-14 8.8E-19 131.4 25.6 246 377-640 2-253 (272)
45 2vq2_A PILW, putative fimbrial 99.7 7E-14 2.4E-18 124.4 27.0 204 412-639 7-213 (225)
46 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-14 3.8E-19 131.3 21.7 201 378-583 23-223 (243)
47 1ouv_A Conserved hypothetical 99.7 5.4E-13 1.8E-17 122.5 32.5 224 342-583 5-252 (273)
48 4e6h_A MRNA 3'-END-processing 99.7 5.5E-12 1.9E-16 128.1 42.3 443 149-642 48-575 (679)
49 2q7f_A YRRB protein; TPR, prot 99.6 2.2E-14 7.5E-19 129.4 22.1 214 341-560 21-234 (243)
50 4e6h_A MRNA 3'-END-processing 99.6 3.2E-12 1.1E-16 129.8 39.8 456 43-528 47-584 (679)
51 2h6f_A Protein farnesyltransfe 99.6 4.8E-14 1.6E-18 134.1 25.0 250 342-620 96-365 (382)
52 2h6f_A Protein farnesyltransfe 99.6 3.1E-14 1.1E-18 135.4 22.9 233 379-639 98-350 (382)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.6E-15 1.2E-19 137.5 15.3 247 40-296 17-269 (275)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.1E-15 2.8E-19 135.1 17.5 249 73-331 15-269 (275)
55 3vtx_A MAMA; tetratricopeptide 99.6 1.3E-13 4.4E-18 118.1 22.9 169 447-639 4-172 (184)
56 2ho1_A Type 4 fimbrial biogene 99.6 3.3E-13 1.1E-17 122.3 26.1 199 381-583 40-239 (252)
57 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-15 4.3E-20 154.4 10.8 152 377-533 126-287 (1134)
58 3spa_A Mtrpol, DNA-directed RN 99.6 1.4E-15 4.7E-20 154.2 10.6 152 341-497 125-286 (1134)
59 2vq2_A PILW, putative fimbrial 99.6 8.6E-13 2.9E-17 117.2 26.5 200 380-583 10-212 (225)
60 4a1s_A PINS, partner of inscut 99.6 4E-14 1.4E-18 139.0 17.9 277 345-637 50-372 (411)
61 3sf4_A G-protein-signaling mod 99.6 3.3E-13 1.1E-17 132.2 22.0 277 343-636 9-335 (406)
62 2ond_A Cleavage stimulation fa 99.6 1.2E-12 4.1E-17 122.2 24.0 218 45-267 33-270 (308)
63 2ond_A Cleavage stimulation fa 99.5 9.4E-12 3.2E-16 116.1 29.9 219 360-583 33-271 (308)
64 3sf4_A G-protein-signaling mod 99.5 8.8E-14 3E-18 136.3 16.9 264 345-624 49-363 (406)
65 3ro2_A PINS homolog, G-protein 99.5 3.3E-13 1.1E-17 128.4 19.9 277 346-638 8-333 (338)
66 4abn_A Tetratricopeptide repea 99.5 3.4E-13 1.1E-17 133.8 20.1 210 394-631 84-315 (474)
67 4a1s_A PINS, partner of inscut 99.5 3.6E-13 1.2E-17 132.2 18.6 239 345-583 88-373 (411)
68 3vtx_A MAMA; tetratricopeptide 99.5 5.8E-12 2E-16 107.7 23.4 169 411-583 3-171 (184)
69 3ulq_A Response regulator aspa 99.5 3.2E-12 1.1E-16 123.8 22.5 231 384-636 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 2.4E-12 8.3E-17 127.6 20.7 213 359-579 84-318 (474)
71 4gyw_A UDP-N-acetylglucosamine 99.5 2.8E-12 9.7E-17 132.0 21.5 165 447-636 8-173 (723)
72 3ro2_A PINS homolog, G-protein 99.5 1.7E-12 5.7E-17 123.5 18.5 239 345-583 45-333 (338)
73 3as5_A MAMA; tetratricopeptide 99.5 3.7E-12 1.3E-16 109.2 18.9 168 449-640 9-176 (186)
74 3ulq_A Response regulator aspa 99.5 6.1E-12 2.1E-16 121.8 22.4 231 349-582 109-368 (383)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.5E-12 5.1E-17 122.3 17.5 240 378-638 27-308 (311)
76 4i17_A Hypothetical protein; T 99.4 1E-11 3.5E-16 110.4 20.2 168 449-640 8-212 (228)
77 3nf1_A KLC 1, kinesin light ch 99.4 2.6E-12 8.9E-17 120.6 16.3 240 342-582 26-307 (311)
78 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.4E-15 110.1 28.6 270 351-636 22-321 (373)
79 4i17_A Hypothetical protein; T 99.4 5.3E-11 1.8E-15 105.7 22.1 209 377-618 6-224 (228)
80 1hz4_A MALT regulatory protein 99.4 4.4E-10 1.5E-14 108.3 28.5 237 346-582 56-322 (373)
81 3q15_A PSP28, response regulat 99.4 1.3E-10 4.5E-15 112.1 24.0 232 348-582 106-365 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.4 1.5E-11 5.1E-16 126.7 18.0 168 60-231 6-173 (723)
83 3q15_A PSP28, response regulat 99.4 1.1E-10 3.8E-15 112.6 23.2 230 384-636 107-364 (378)
84 3as5_A MAMA; tetratricopeptide 99.4 1.2E-10 4.1E-15 99.6 21.0 167 413-583 8-174 (186)
85 3edt_B KLC 2, kinesin light ch 99.3 3.4E-11 1.2E-15 111.1 15.6 234 389-637 12-281 (283)
86 2fo7_A Synthetic consensus TPR 99.3 3.1E-10 1.1E-14 91.1 17.8 132 485-639 3-134 (136)
87 1qqe_A Vesicular transport pro 99.2 3E-10 1E-14 104.9 17.9 203 13-232 2-228 (292)
88 3qky_A Outer membrane assembly 99.2 5.8E-10 2E-14 101.3 19.2 64 556-640 151-227 (261)
89 2uy1_A Cleavage stimulation fa 99.2 2.8E-08 9.6E-13 98.2 32.3 104 8-126 6-117 (493)
90 3mv2_B Coatomer subunit epsilo 99.2 3.6E-09 1.2E-13 95.0 23.2 253 353-640 23-285 (310)
91 4ga2_A E3 SUMO-protein ligase 99.2 5.5E-11 1.9E-15 97.1 10.6 145 454-623 3-149 (150)
92 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 5.9E-15 106.3 15.4 229 354-582 12-281 (283)
93 1qqe_A Vesicular transport pro 99.2 4E-10 1.4E-14 104.0 16.7 213 393-638 32-270 (292)
94 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.2E-09 7.6E-14 94.7 20.7 190 413-642 4-218 (225)
95 2pzi_A Probable serine/threoni 99.2 4.8E-10 1.7E-14 116.4 17.7 173 424-623 402-583 (681)
96 3urz_A Uncharacterized protein 99.2 4.7E-10 1.6E-14 97.6 14.6 164 413-583 4-187 (208)
97 3rjv_A Putative SEL1 repeat pr 99.2 5.6E-09 1.9E-13 90.9 21.4 175 432-638 5-198 (212)
98 3qky_A Outer membrane assembly 99.2 1.6E-09 5.4E-14 98.4 18.4 167 414-583 16-225 (261)
99 3qou_A Protein YBBN; thioredox 99.2 1.3E-09 4.4E-14 100.1 18.0 165 447-636 116-283 (287)
100 3mv2_B Coatomer subunit epsilo 99.2 2E-08 7E-13 90.1 24.8 180 397-583 85-283 (310)
101 3urz_A Uncharacterized protein 99.1 2.2E-09 7.6E-14 93.2 17.7 174 380-560 6-197 (208)
102 2uy1_A Cleavage stimulation fa 99.1 1.3E-07 4.5E-12 93.4 32.2 104 75-196 6-117 (493)
103 2vsy_A XCC0866; transferase, g 99.1 1.6E-09 5.5E-14 110.7 19.0 154 426-583 2-158 (568)
104 2fo7_A Synthetic consensus TPR 99.1 5.9E-09 2E-13 83.4 18.3 131 450-583 3-133 (136)
105 2r5s_A Uncharacterized protein 99.1 9.2E-10 3.1E-14 92.9 13.5 163 451-636 9-172 (176)
106 3gyz_A Chaperone protein IPGC; 99.1 2E-10 7E-15 92.9 8.1 104 514-639 31-135 (151)
107 4gco_A Protein STI-1; structur 99.1 1.9E-09 6.5E-14 84.6 13.4 97 485-583 15-111 (126)
108 4ga2_A E3 SUMO-protein ligase 99.1 5.4E-10 1.9E-14 91.1 10.4 124 70-196 4-128 (150)
109 3rjv_A Putative SEL1 repeat pr 99.1 5.2E-08 1.8E-12 84.8 23.6 176 396-583 4-198 (212)
110 2r5s_A Uncharacterized protein 99.1 1.5E-09 5.1E-14 91.5 13.3 163 64-230 7-171 (176)
111 2pzi_A Probable serine/threoni 99.1 9.4E-10 3.2E-14 114.2 14.5 173 74-252 402-582 (681)
112 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.5E-08 5E-13 89.4 18.9 184 65-268 6-214 (225)
113 3dra_A Protein farnesyltransfe 99.0 1.9E-07 6.4E-12 85.0 26.0 222 357-583 47-289 (306)
114 3dra_A Protein farnesyltransfe 99.0 7.4E-08 2.5E-12 87.6 22.8 170 44-218 49-235 (306)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.2E-08 4.2E-13 89.2 17.1 144 486-640 9-153 (213)
116 4gco_A Protein STI-1; structur 99.0 1.3E-08 4.4E-13 79.8 15.1 114 444-561 8-123 (126)
117 3qou_A Protein YBBN; thioredox 99.0 5.2E-09 1.8E-13 96.1 14.6 165 97-265 116-282 (287)
118 2vsy_A XCC0866; transferase, g 99.0 2.2E-08 7.7E-13 102.2 20.0 164 391-559 2-168 (568)
119 2vgx_A Chaperone SYCD; alterna 99.0 2.4E-09 8.3E-14 86.9 10.3 96 485-582 23-118 (148)
120 3u3w_A Transcriptional activat 99.0 1.6E-07 5.5E-12 86.6 23.1 167 454-636 81-265 (293)
121 2ifu_A Gamma-SNAP; membrane fu 99.0 1.6E-08 5.5E-13 94.0 15.9 174 391-580 29-222 (307)
122 1a17_A Serine/threonine protei 98.9 4.7E-08 1.6E-12 81.5 16.1 129 484-635 14-144 (166)
123 2qfc_A PLCR protein; TPR, HTH, 98.9 5E-07 1.7E-11 83.3 23.2 170 450-636 77-265 (293)
124 2e2e_A Formate-dependent nitri 98.9 2.1E-08 7.2E-13 84.6 12.5 122 459-583 21-145 (177)
125 2ifu_A Gamma-SNAP; membrane fu 98.9 4.6E-08 1.6E-12 90.9 15.5 207 390-639 3-225 (307)
126 1p5q_A FKBP52, FK506-binding p 98.9 4.5E-08 1.5E-12 92.0 15.0 127 485-635 149-292 (336)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.1E-07 7.2E-12 81.3 18.2 126 66-197 9-150 (213)
128 2xcb_A PCRH, regulatory protei 98.8 1.7E-08 5.7E-13 81.5 10.2 97 485-583 20-116 (142)
129 3u3w_A Transcriptional activat 98.8 8.9E-07 3E-11 81.6 23.2 165 418-582 80-266 (293)
130 1na0_A Designed protein CTPR3; 98.8 1.4E-07 4.9E-12 73.9 15.4 116 483-621 9-124 (125)
131 2lni_A Stress-induced-phosphop 98.8 7.3E-08 2.5E-12 76.7 13.8 120 481-623 14-133 (133)
132 3gyz_A Chaperone protein IPGC; 98.8 6.2E-08 2.1E-12 78.2 13.3 98 483-583 36-134 (151)
133 2vyi_A SGTA protein; chaperone 98.8 9.9E-08 3.4E-12 75.6 14.4 119 483-624 12-130 (131)
134 3upv_A Heat shock protein STI1 98.8 5.8E-08 2E-12 76.4 12.5 95 485-581 6-100 (126)
135 2qfc_A PLCR protein; TPR, HTH, 98.8 1E-06 3.5E-11 81.2 22.1 168 414-581 76-265 (293)
136 4gcn_A Protein STI-1; structur 98.8 4E-08 1.4E-12 77.2 10.6 106 518-642 8-117 (127)
137 1hxi_A PEX5, peroxisome target 98.8 5E-08 1.7E-12 75.8 10.9 99 520-640 19-117 (121)
138 3gw4_A Uncharacterized protein 98.8 1.2E-07 4E-12 82.1 14.5 96 485-580 28-134 (203)
139 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.8E-12 83.5 14.7 128 489-639 108-239 (282)
140 2kck_A TPR repeat; tetratricop 98.8 7.5E-08 2.6E-12 73.8 11.7 103 517-641 5-110 (112)
141 4f3v_A ESX-1 secretion system 98.8 8.3E-08 2.8E-12 85.0 13.1 189 40-232 18-237 (282)
142 3q7a_A Farnesyltransferase alp 98.8 1.6E-06 5.3E-11 79.7 22.0 171 40-215 66-254 (349)
143 3q7a_A Farnesyltransferase alp 98.8 2.2E-06 7.4E-11 78.7 22.6 232 66-302 57-331 (349)
144 2c2l_A CHIP, carboxy terminus 98.8 2.9E-08 1E-12 90.6 10.5 195 412-637 3-199 (281)
145 2vgx_A Chaperone SYCD; alterna 98.8 4.7E-08 1.6E-12 79.2 10.5 109 435-547 9-118 (148)
146 1a17_A Serine/threonine protei 98.8 4.3E-07 1.5E-11 75.5 16.7 130 449-581 14-145 (166)
147 3sz7_A HSC70 cochaperone (SGT) 98.8 9.8E-08 3.4E-12 79.2 12.4 99 482-583 10-109 (164)
148 2c2l_A CHIP, carboxy terminus 98.7 5.8E-08 2E-12 88.7 11.5 100 61-162 2-101 (281)
149 2e2e_A Formate-dependent nitri 98.7 9.1E-08 3.1E-12 80.7 11.7 120 40-162 22-144 (177)
150 3q49_B STIP1 homology and U bo 98.7 1.7E-07 5.9E-12 75.0 12.7 101 481-583 7-107 (137)
151 1elw_A TPR1-domain of HOP; HOP 98.7 3.1E-07 1E-11 71.1 13.8 98 484-583 5-102 (118)
152 2lni_A Stress-induced-phosphop 98.7 2E-07 6.9E-12 74.1 13.0 118 61-181 14-131 (133)
153 1na0_A Designed protein CTPR3; 98.7 3.7E-07 1.3E-11 71.5 14.0 101 518-640 9-109 (125)
154 1p5q_A FKBP52, FK506-binding p 98.7 1.6E-08 5.4E-13 95.1 6.8 149 43-194 128-291 (336)
155 1elw_A TPR1-domain of HOP; HOP 98.7 7.3E-07 2.5E-11 68.9 15.1 113 447-562 3-115 (118)
156 2dba_A Smooth muscle cell asso 98.7 9.2E-07 3.1E-11 71.7 16.3 116 481-620 26-145 (148)
157 4gcn_A Protein STI-1; structur 98.7 2.9E-07 1E-11 72.2 12.6 98 484-583 9-113 (127)
158 2fbn_A 70 kDa peptidylprolyl i 98.7 4.3E-07 1.5E-11 78.1 14.4 133 485-639 40-188 (198)
159 2xcb_A PCRH, regulatory protei 98.7 8.1E-08 2.8E-12 77.4 8.8 98 448-547 18-115 (142)
160 2vyi_A SGTA protein; chaperone 98.7 2.8E-07 9.5E-12 72.9 12.0 118 63-183 12-129 (131)
161 3gw4_A Uncharacterized protein 98.6 3.3E-07 1.1E-11 79.2 12.2 84 75-159 4-92 (203)
162 3upv_A Heat shock protein STI1 98.6 4.1E-07 1.4E-11 71.4 11.6 98 63-162 4-101 (126)
163 3dss_A Geranylgeranyl transfer 98.6 5E-05 1.7E-09 69.5 26.5 186 429-639 90-306 (331)
164 2dba_A Smooth muscle cell asso 98.6 8.3E-07 2.8E-11 72.0 13.4 102 516-640 26-131 (148)
165 2hr2_A Hypothetical protein; a 98.6 3.1E-07 1.1E-11 73.0 10.3 98 519-639 12-133 (159)
166 2kck_A TPR repeat; tetratricop 98.6 6.7E-07 2.3E-11 68.4 12.1 101 61-163 4-107 (112)
167 3q49_B STIP1 homology and U bo 98.6 6.3E-07 2.2E-11 71.6 12.3 101 445-547 6-106 (137)
168 2xev_A YBGF; tetratricopeptide 98.6 1E-06 3.5E-11 69.5 13.2 94 487-583 6-106 (129)
169 3dss_A Geranylgeranyl transfer 98.6 6.6E-05 2.3E-09 68.7 26.6 222 354-583 40-305 (331)
170 3sz7_A HSC70 cochaperone (SGT) 98.6 7.4E-07 2.5E-11 73.8 12.9 99 446-547 9-108 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.6 3.5E-07 1.2E-11 72.3 10.4 104 518-640 4-111 (131)
172 3rkv_A Putative peptidylprolyl 98.5 5.8E-07 2E-11 74.3 11.0 100 483-583 11-127 (162)
173 3k9i_A BH0479 protein; putativ 98.5 1.7E-07 5.8E-12 72.5 6.4 88 495-583 2-91 (117)
174 2if4_A ATFKBP42; FKBP-like, al 98.5 3.4E-07 1.2E-11 86.0 9.3 153 448-641 179-332 (338)
175 1hxi_A PEX5, peroxisome target 98.5 9.1E-07 3.1E-11 68.6 10.2 97 64-162 18-114 (121)
176 1elr_A TPR2A-domain of HOP; HO 98.5 1.4E-06 4.8E-11 68.8 11.6 99 484-583 5-109 (131)
177 3ro3_A PINS homolog, G-protein 98.5 1.3E-06 4.5E-11 72.2 11.6 137 485-637 11-158 (164)
178 1wao_1 Serine/threonine protei 98.5 3.4E-07 1.2E-11 90.4 8.9 118 491-632 14-134 (477)
179 2fbn_A 70 kDa peptidylprolyl i 98.5 2.1E-06 7.3E-11 73.7 12.9 124 63-188 38-176 (198)
180 2xev_A YBGF; tetratricopeptide 98.5 5.3E-06 1.8E-10 65.3 14.2 93 452-547 6-105 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.5E-06 5.1E-11 85.5 12.9 64 519-583 318-381 (457)
182 3k9i_A BH0479 protein; putativ 98.4 5.6E-07 1.9E-11 69.5 7.5 86 460-547 2-90 (117)
183 3rkv_A Putative peptidylprolyl 98.4 2.2E-06 7.4E-11 70.8 11.5 103 448-554 11-131 (162)
184 1ihg_A Cyclophilin 40; ppiase 98.4 2.6E-06 9E-11 80.8 13.0 92 517-630 272-363 (370)
185 4b4t_Q 26S proteasome regulato 98.4 3.9E-05 1.3E-09 75.3 21.9 199 422-636 13-244 (434)
186 1klx_A Cysteine rich protein B 98.4 1.4E-05 4.8E-10 63.5 14.7 77 498-582 10-90 (138)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.7E-07 1.3E-11 89.8 5.8 125 62-188 267-405 (457)
188 3ro3_A PINS homolog, G-protein 98.3 5.7E-06 2E-10 68.2 12.1 133 450-582 11-158 (164)
189 1dce_A Protein (RAB geranylger 98.3 3.1E-05 1.1E-09 77.8 19.1 174 428-626 44-244 (567)
190 2hr2_A Hypothetical protein; a 98.3 1.1E-05 3.8E-10 64.2 12.1 96 486-583 14-132 (159)
191 4b4t_Q 26S proteasome regulato 98.3 9.5E-05 3.3E-09 72.5 22.0 121 460-580 107-243 (434)
192 1wao_1 Serine/threonine protei 98.3 6.6E-06 2.3E-10 81.2 13.1 119 455-577 13-134 (477)
193 1dce_A Protein (RAB geranylger 98.2 5.6E-05 1.9E-09 75.9 17.9 155 462-640 43-224 (567)
194 1klx_A Cysteine rich protein B 98.2 7.1E-05 2.4E-09 59.3 15.0 111 462-583 9-127 (138)
195 2l6j_A TPR repeat-containing p 98.2 7.4E-06 2.5E-10 62.3 8.5 95 517-633 3-103 (111)
196 2kat_A Uncharacterized protein 98.2 1.5E-05 5.1E-10 61.1 10.1 81 501-583 3-83 (115)
197 2if4_A ATFKBP42; FKBP-like, al 98.1 9.1E-06 3.1E-10 76.2 10.2 117 484-640 180-296 (338)
198 1ihg_A Cyclophilin 40; ppiase 98.1 1.5E-05 5.1E-10 75.6 11.6 121 65-187 225-360 (370)
199 1na3_A Designed protein CTPR2; 98.1 2.8E-05 9.4E-10 56.4 10.6 84 517-622 8-91 (91)
200 1zu2_A Mitochondrial import re 98.1 4.5E-06 1.5E-10 66.2 5.8 88 531-640 15-123 (158)
201 3n71_A Histone lysine methyltr 98.0 6.3E-05 2.2E-09 73.5 13.6 132 492-636 318-463 (490)
202 3ma5_A Tetratricopeptide repea 98.0 3.4E-05 1.2E-09 57.2 9.0 66 517-583 6-71 (100)
203 2kat_A Uncharacterized protein 97.9 9.1E-05 3.1E-09 56.6 10.6 80 466-547 3-82 (115)
204 1na3_A Designed protein CTPR2; 97.9 5.8E-05 2E-09 54.6 8.8 81 62-144 8-88 (91)
205 1zu2_A Mitochondrial import re 97.9 1.9E-05 6.6E-10 62.6 5.9 93 42-138 16-129 (158)
206 3ma5_A Tetratricopeptide repea 97.8 5.9E-05 2E-09 55.8 7.7 65 480-546 4-69 (100)
207 2l6j_A TPR repeat-containing p 97.8 0.00011 3.7E-09 55.6 9.2 68 552-640 3-70 (111)
208 3n71_A Histone lysine methyltr 97.8 0.00014 4.8E-09 71.1 11.5 124 458-581 319-463 (490)
209 2kc7_A BFR218_protein; tetratr 97.7 5.3E-05 1.8E-09 56.0 6.0 59 524-583 6-65 (99)
210 3bee_A Putative YFRE protein; 97.7 0.00038 1.3E-08 50.1 9.8 66 517-583 5-73 (93)
211 3lvg_A Clathrin heavy chain 1; 97.7 2.2E-07 7.6E-12 86.1 -9.1 449 40-540 37-534 (624)
212 3ly7_A Transcriptional activat 97.6 0.00072 2.5E-08 62.0 12.2 136 445-583 191-340 (372)
213 1pc2_A Mitochondria fission pr 97.6 0.00061 2.1E-08 53.4 9.8 84 498-583 13-101 (152)
214 4h7y_A Dual specificity protei 97.4 0.002 6.8E-08 49.4 10.2 104 517-642 12-128 (161)
215 3ly7_A Transcriptional activat 97.3 0.018 6E-07 53.0 17.8 144 410-559 191-349 (372)
216 2kc7_A BFR218_protein; tetratr 97.3 0.00068 2.3E-08 49.8 7.4 62 558-640 5-67 (99)
217 3qww_A SET and MYND domain-con 97.3 0.00089 3E-08 64.3 9.8 94 530-636 310-410 (433)
218 2v5f_A Prolyl 4-hydroxylase su 97.2 0.00066 2.3E-08 50.4 6.5 76 551-640 3-78 (104)
219 3u64_A Protein TP_0956; tetrat 97.2 0.0013 4.4E-08 57.6 8.2 88 534-644 179-278 (301)
220 3qwp_A SET and MYND domain-con 97.1 0.0031 1.1E-07 60.7 11.3 99 525-636 294-399 (429)
221 3bee_A Putative YFRE protein; 97.1 0.0051 1.7E-07 44.1 9.6 67 480-548 3-73 (93)
222 3lvg_A Clathrin heavy chain 1; 97.1 1.2E-06 4.3E-11 81.2 -11.8 233 97-366 53-285 (624)
223 3qww_A SET and MYND domain-con 97.1 0.0035 1.2E-07 60.2 11.0 87 495-581 310-410 (433)
224 1pc2_A Mitochondria fission pr 97.1 0.0084 2.9E-07 47.0 11.1 88 463-554 13-105 (152)
225 3qwp_A SET and MYND domain-con 97.0 0.0089 3.1E-07 57.5 13.0 92 490-581 294-399 (429)
226 2v5f_A Prolyl 4-hydroxylase su 96.9 0.012 4.1E-07 43.5 10.7 65 519-583 6-76 (104)
227 1nzn_A CGI-135 protein, fissio 96.8 0.0076 2.6E-07 45.3 8.9 86 496-583 14-104 (126)
228 3u64_A Protein TP_0956; tetrat 96.8 0.0045 1.5E-07 54.3 8.1 98 78-175 178-284 (301)
229 3mkq_A Coatomer beta'-subunit; 96.6 0.064 2.2E-06 57.3 18.2 168 417-627 633-802 (814)
230 4h7y_A Dual specificity protei 96.6 0.017 5.8E-07 44.4 9.1 105 60-166 10-127 (161)
231 3mkq_B Coatomer subunit alpha; 96.3 0.086 2.9E-06 42.5 12.3 103 456-579 13-115 (177)
232 3mkq_A Coatomer beta'-subunit; 96.2 0.13 4.5E-06 54.8 17.7 154 4-194 607-762 (814)
233 1nzn_A CGI-135 protein, fissio 96.2 0.078 2.7E-06 39.8 10.5 91 459-553 12-107 (126)
234 3mkq_B Coatomer subunit alpha; 96.1 0.31 1E-05 39.3 14.2 99 40-159 17-115 (177)
235 1wy6_A Hypothetical protein ST 95.9 0.38 1.3E-05 36.2 17.9 82 496-583 74-155 (172)
236 1y8m_A FIS1; mitochondria, unk 95.3 0.54 1.8E-05 36.0 12.2 69 515-583 36-107 (144)
237 1wy6_A Hypothetical protein ST 95.3 0.65 2.2E-05 35.0 16.1 141 388-550 17-157 (172)
238 3o48_A Mitochondria fission 1 95.1 0.18 6.1E-06 38.0 9.0 29 608-636 78-106 (134)
239 4b4t_P 26S proteasome regulato 94.6 3.5 0.00012 39.7 19.5 96 451-546 140-246 (445)
240 3ffl_A Anaphase-promoting comp 94.4 0.1 3.5E-06 41.2 6.5 124 513-636 13-150 (167)
241 4gns_B Protein CSD3, chitin bi 94.4 0.27 9.2E-06 50.4 11.4 54 561-635 345-398 (754)
242 1qsa_A Protein (soluble lytic 94.4 4.9 0.00017 40.5 26.2 117 497-636 228-347 (618)
243 4gns_B Protein CSD3, chitin bi 94.1 0.26 8.8E-06 50.5 10.5 53 526-579 345-397 (754)
244 2ff4_A Probable regulatory pro 93.0 0.29 1E-05 46.3 8.5 69 555-644 173-246 (388)
245 3o48_A Mitochondria fission 1 92.8 1.7 5.7E-05 32.9 10.3 69 515-583 37-108 (134)
246 3ffl_A Anaphase-promoting comp 91.8 1.8 6.1E-05 34.3 9.9 124 443-579 13-148 (167)
247 4b4t_P 26S proteasome regulato 91.5 10 0.00035 36.5 19.3 96 486-581 140-246 (445)
248 4fhn_B Nucleoporin NUP120; pro 91.4 3.6 0.00012 45.4 15.6 86 484-571 900-989 (1139)
249 4fhn_B Nucleoporin NUP120; pro 91.1 4.2 0.00014 44.9 15.7 52 68-124 817-868 (1139)
250 1y8m_A FIS1; mitochondria, unk 91.1 4.2 0.00014 31.2 12.6 74 479-554 35-111 (144)
251 3txn_A 26S proteasome regulato 90.9 10 0.00036 35.5 16.5 25 380-404 21-45 (394)
252 4ady_A RPN2, 26S proteasome re 90.8 18 0.00063 38.2 38.8 257 247-511 383-657 (963)
253 1qsa_A Protein (soluble lytic 90.5 16 0.00054 36.8 32.0 165 462-636 228-409 (618)
254 2ff4_A Probable regulatory pro 90.0 5.8 0.0002 37.4 13.8 60 521-581 174-233 (388)
255 4ady_A RPN2, 26S proteasome re 90.0 22 0.00074 37.6 46.3 258 316-581 382-657 (963)
256 1v54_E Cytochrome C oxidase po 89.1 2.4 8.2E-05 30.0 7.4 50 498-547 25-74 (109)
257 3lpz_A GET4 (YOR164C homolog); 88.8 13 0.00046 33.6 20.3 80 552-636 135-215 (336)
258 1v54_E Cytochrome C oxidase po 87.7 5.8 0.0002 28.1 9.4 62 463-525 25-86 (109)
259 3esl_A Checkpoint serine/threo 86.3 6.1 0.00021 32.5 9.6 53 531-583 92-145 (202)
260 3txn_A 26S proteasome regulato 85.7 23 0.0008 33.1 19.8 167 343-510 19-208 (394)
261 1zbp_A Hypothetical protein VP 85.6 17 0.00059 31.5 13.7 122 492-637 6-129 (273)
262 3esl_A Checkpoint serine/threo 85.5 7.5 0.00026 32.0 9.7 84 469-552 58-149 (202)
263 2y69_E Cytochrome C oxidase su 84.9 11 0.00036 28.5 9.4 62 498-560 68-129 (152)
264 2y69_E Cytochrome C oxidase su 83.5 5.8 0.0002 29.9 7.4 48 536-583 71-118 (152)
265 4b4t_R RPN7, 26S proteasome re 82.4 6.3 0.00022 37.8 9.6 98 485-582 133-237 (429)
266 1zbp_A Hypothetical protein VP 81.9 3.5 0.00012 35.7 6.7 58 561-639 5-62 (273)
267 4a1g_A Mitotic checkpoint seri 80.8 12 0.00041 29.2 8.8 47 537-583 84-131 (152)
268 4a1g_A Mitotic checkpoint seri 80.6 15 0.00053 28.6 9.3 73 479-554 64-137 (152)
269 4b4t_R RPN7, 26S proteasome re 80.3 14 0.00048 35.3 11.3 63 64-126 132-196 (429)
270 2wpv_A GET4, UPF0363 protein Y 77.9 39 0.0013 30.3 20.2 121 512-636 86-216 (312)
271 2uwj_G Type III export protein 77.6 16 0.00054 25.8 7.4 51 72-128 48-98 (115)
272 2p58_C Putative type III secre 77.0 17 0.00058 25.7 8.3 49 73-127 50-98 (116)
273 2wvi_A Mitotic checkpoint seri 76.4 22 0.00077 28.1 9.2 48 536-583 78-126 (164)
274 2uwj_G Type III export protein 75.5 9.9 0.00034 26.8 6.0 80 216-303 19-98 (115)
275 2wvi_A Mitotic checkpoint seri 74.8 8.8 0.0003 30.4 6.6 53 570-642 77-130 (164)
276 2p58_C Putative type III secre 71.2 24 0.00084 24.9 8.1 79 77-163 21-99 (116)
277 2wpv_A GET4, UPF0363 protein Y 71.2 58 0.002 29.2 21.6 82 481-581 132-216 (312)
278 4aez_C MAD3, mitotic spindle c 68.6 27 0.00092 29.3 8.4 51 535-585 131-182 (223)
279 4aez_C MAD3, mitotic spindle c 66.4 13 0.00043 31.2 6.0 52 570-641 131-183 (223)
280 3ltm_A Alpha-REP4; protein eng 63.3 63 0.0022 26.7 18.6 17 97-113 32-48 (211)
281 3mv2_A Coatomer subunit alpha; 63.2 85 0.0029 28.1 11.5 22 349-370 34-55 (325)
282 3kae_A CDC27, possible protein 59.7 23 0.00078 28.1 5.8 98 528-637 43-143 (242)
283 3ltm_A Alpha-REP4; protein eng 57.3 81 0.0028 26.0 19.4 154 61-231 31-184 (211)
284 3kae_A CDC27, possible protein 56.4 48 0.0016 26.3 7.1 56 72-127 71-143 (242)
285 2qx5_A Nucleoporin NIC96; mRNA 55.9 1.8E+02 0.0061 29.5 19.2 81 383-474 299-382 (661)
286 2ijq_A Hypothetical protein; s 52.0 60 0.0021 25.6 7.3 55 72-126 41-103 (161)
287 4b4t_S RPN3, 26S proteasome re 51.6 1.2E+02 0.0042 29.5 10.7 64 484-547 232-299 (523)
288 3lpz_A GET4 (YOR164C homolog); 51.5 1.4E+02 0.0048 27.1 25.0 83 480-581 133-215 (336)
289 1bpo_A Protein (clathrin); cla 47.0 2E+02 0.0068 27.5 11.6 106 40-150 341-446 (494)
290 1wdy_A 2-5A-dependent ribonucl 43.4 1.6E+02 0.0055 25.4 11.1 7 109-115 13-19 (285)
291 4gq2_M Nucleoporin NUP120; bet 40.4 2.2E+02 0.0075 30.7 12.0 132 68-217 815-950 (950)
292 4ets_A Ferric uptake regulatio 37.1 1.4E+02 0.0049 23.5 7.7 70 500-570 14-86 (162)
293 2w2u_A Hypothetical P60 katani 36.6 43 0.0015 22.8 3.8 17 619-635 30-46 (83)
294 1ya0_A SMG-7 transcript varian 36.3 2.3E+02 0.008 27.5 10.3 73 489-564 158-231 (497)
295 4ets_A Ferric uptake regulatio 36.3 66 0.0023 25.5 5.5 25 103-127 37-61 (162)
296 3eiq_C Programmed cell death p 35.3 2.7E+02 0.0091 25.6 11.8 25 241-265 57-81 (358)
297 2v6y_A AAA family ATPase, P60 35.1 46 0.0016 22.7 3.8 16 620-635 23-38 (83)
298 3eu9_A Huntingtin-interacting 34.5 2E+02 0.0068 23.9 10.0 10 389-398 218-227 (240)
299 2d2s_A Exocyst complex compone 34.0 2.2E+02 0.0075 24.2 9.5 28 342-369 90-117 (235)
300 2d2s_A Exocyst complex compone 33.5 2.2E+02 0.0076 24.2 10.5 22 455-476 25-46 (235)
301 3jxi_A Vanilloid receptor-rela 31.7 1.2E+02 0.0039 26.1 7.1 13 355-367 234-246 (260)
302 1bpo_A Protein (clathrin); cla 31.5 3.5E+02 0.012 25.9 10.0 142 461-635 342-483 (494)
303 3eiq_C Programmed cell death p 31.4 3.1E+02 0.011 25.2 10.6 25 66-90 57-81 (358)
304 4gq2_M Nucleoporin NUP120; bet 30.6 2.3E+02 0.0079 30.5 10.2 48 240-287 899-950 (950)
305 3hra_A Ankyrin repeat family p 29.4 2.1E+02 0.0073 22.9 8.1 187 210-402 9-199 (201)
306 2crb_A Nuclear receptor bindin 28.5 1E+02 0.0036 21.3 4.4 28 608-635 15-42 (97)
307 3eyy_A Putative iron uptake re 28.3 1.7E+02 0.006 22.4 6.7 33 80-112 34-66 (145)
308 3mv2_A Coatomer subunit alpha; 27.9 3.3E+02 0.011 24.4 13.2 49 80-128 187-237 (325)
309 3ltj_A Alpharep-4; protein eng 27.8 2.4E+02 0.0082 22.7 20.0 50 96-149 57-106 (201)
310 2cwy_A Hypothetical protein TT 27.7 97 0.0033 21.7 4.5 53 72-126 10-67 (94)
311 2xig_A Ferric uptake regulatio 27.7 2.1E+02 0.0073 22.1 7.9 61 509-570 18-78 (150)
312 1mzb_A Ferric uptake regulatio 27.3 2E+02 0.0069 21.7 7.6 61 509-570 9-70 (136)
313 2ijq_A Hypothetical protein; s 27.2 2.3E+02 0.0079 22.3 8.3 52 495-546 44-103 (161)
314 2w57_A Ferric uptake regulatio 27.1 2.2E+02 0.0074 22.0 7.6 61 509-570 8-69 (150)
315 2fe3_A Peroxide operon regulat 27.0 2.1E+02 0.0073 21.9 8.0 60 509-569 13-72 (145)
316 3jxi_A Vanilloid receptor-rela 26.9 69 0.0024 27.6 4.7 25 178-202 12-36 (260)
317 3eyy_A Putative iron uptake re 26.9 2E+02 0.0069 22.0 6.8 59 509-569 10-68 (145)
318 3bge_A Predicted ATPase; struc 26.8 2.6E+02 0.009 22.9 8.6 100 97-196 3-110 (201)
319 3ubw_A 14-3-3E, 14-3-3 protein 26.8 3.1E+02 0.011 23.7 10.2 17 620-636 211-227 (261)
320 2ion_A PDCD4, programmed cell 26.4 2.3E+02 0.0078 22.0 7.0 22 208-229 14-35 (152)
321 4b4t_S RPN3, 26S proteasome re 26.0 4.7E+02 0.016 25.5 12.0 65 98-162 231-299 (523)
322 1wdy_A 2-5A-dependent ribonucl 26.0 3.1E+02 0.011 23.4 11.6 11 142-152 11-21 (285)
323 2crb_A Nuclear receptor bindin 25.0 1.4E+02 0.0047 20.7 4.5 26 555-580 17-42 (97)
324 3ltj_A Alpharep-4; protein eng 24.9 2.7E+02 0.0093 22.4 18.5 153 96-265 26-178 (201)
325 2xig_A Ferric uptake regulatio 24.8 2.3E+02 0.0079 21.9 6.8 47 101-147 29-75 (150)
326 2o03_A Probable zinc uptake re 24.7 1.5E+02 0.0052 22.2 5.6 48 523-570 15-62 (131)
327 3mwm_A ZUR, putative metal upt 24.7 1.4E+02 0.0047 22.8 5.4 47 523-569 18-64 (139)
328 2fe3_A Peroxide operon regulat 24.6 2.4E+02 0.0081 21.6 7.5 20 108-127 31-50 (145)
329 3ctd_A Putative ATPase, AAA fa 24.0 3.1E+02 0.011 22.7 9.6 46 98-143 32-80 (213)
330 1wfd_A Hypothetical protein 15 23.1 96 0.0033 21.7 3.8 14 569-582 12-25 (93)
331 1mzb_A Ferric uptake regulatio 23.0 2.3E+02 0.0078 21.4 6.4 15 113-127 33-47 (136)
332 3bu8_A Telomeric repeat-bindin 22.3 3.4E+02 0.012 22.6 10.8 20 212-231 123-142 (235)
333 2o03_A Probable zinc uptake re 22.3 1.4E+02 0.0048 22.4 5.0 42 106-147 18-59 (131)
334 2r9g_A AAA ATPase, central reg 22.3 3.3E+02 0.011 22.4 10.2 34 461-495 27-60 (204)
335 2nsz_A Programmed cell death p 21.4 2.6E+02 0.0089 20.9 8.3 22 208-229 12-33 (129)
336 3t5v_B Nuclear mRNA export pro 21.4 1.3E+02 0.0043 28.9 5.4 70 556-637 179-249 (455)
337 3bu8_A Telomeric repeat-bindin 21.3 3.6E+02 0.012 22.5 7.7 24 349-372 120-143 (235)
338 3i5p_A Nucleoporin NUP170; hel 21.2 5.9E+02 0.02 24.9 10.4 76 562-638 171-247 (525)
339 3mwm_A ZUR, putative metal upt 21.0 1.3E+02 0.0044 23.0 4.6 36 77-112 27-62 (139)
340 2br9_A 14-3-3E, 14-3-3 protein 20.2 4E+02 0.014 22.6 8.8 17 620-636 185-201 (234)
341 2b7e_A PRE-mRNA processing pro 20.2 1.2E+02 0.0041 19.0 3.2 10 239-248 22-31 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-41 Score=352.16 Aligned_cols=507 Identities=12% Similarity=0.033 Sum_probs=384.5
Q ss_pred hcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 75 QQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALE 154 (647)
Q Consensus 75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (647)
..|....+...+..+. .++...|..++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444444444444332 245667777777777777777777777777754 4566777777777777777777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc---------------CCCCCcchHHHHHHHHHhcCCh
Q 006396 155 FTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK---------------GSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 7777654 3567777777777777777777777777742211 1122456788888888888888
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL--GL-LYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLY 296 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (647)
++|.++|+++.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 8888888888776422 3444555554443332222111 11 334443333344455666677788888888888888
Q ss_pred HHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006396 297 NEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (647)
+++.+. +++..++..++..+.+.|++++|..+|+.+...+ +.+..++..++.++.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 888765 5677888888888888888888888888888765 3467778888999999999999999999988654 34
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK 456 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 456 (647)
+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 67788889999999999999999999988753 4568899999999999999999999999998764 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhh
Q 006396 457 GLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEPT--SATYNILIDGLCV 530 (647)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 530 (647)
+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999864 567889999999999999999999999999874 55777 7899999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
.|++++|.+.++++.+.+ +.+..+|..++.+|...|++++|.+.++++++.. |.+..+
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---------------------p~~~~~ 586 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS---------------------PNEIMA 586 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---------------------CCChHH
Confidence 999999999999999864 5578899999999999999999999999999987 778888
Q ss_pred HHHHHHHHH
Q 006396 611 CEVMLIAFH 619 (647)
Q Consensus 611 ~~~l~~~~~ 619 (647)
+..++.+|.
T Consensus 587 ~~~l~~~~~ 595 (597)
T 2xpi_A 587 SDLLKRALE 595 (597)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 888887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-41 Score=347.46 Aligned_cols=496 Identities=9% Similarity=-0.025 Sum_probs=407.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006396 108 YCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187 (647)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (647)
+...|....+...+..+. .++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++.++...|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 344555666666655443 46788999999999999999999999999986 467889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCcCcccHHHHHHHHHhcC
Q 006396 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ---------------GFKLNVIAYSVLLSSMCKSG 252 (647)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g 252 (647)
..+|+++... .++..+++.++..|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998654 568889999999999999999999999853222 12335778999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH--H-HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHH
Q 006396 253 RIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQ--L-YNEMCSKRISPNSFAHGAILLGLCEKEMITEARM 329 (647)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 329 (647)
++++|.+.|+++.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999999886422 45556666555544433222211 1 3344333333333445555777889999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006396 330 YFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGL 409 (647)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (647)
+|+.+... +++..+++.++..|.+.|++++|..+|+++.+.++. +..++..++.++...|++++|..+++.+....
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998875 578999999999999999999999999999987644 78899999999999999999999999998653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI 489 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (647)
+.+..+++.++..|.+.|++++|..+|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 6678999999999999999999999999998753 4568899999999999999999999999999875 6688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLT--KVAYTTIIKAH 563 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~ 563 (647)
+.+|.+.|++++|.++|+++.+.. +.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999842 347899999999999999999999999999875 55676 67999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+.|++++|++.++++.+.+ |.+..+|..++.+|.+.|++++|.+.++++++.+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS---------------------TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 778999999999999999999999999999997653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=4.5e-28 Score=236.55 Aligned_cols=382 Identities=15% Similarity=0.074 Sum_probs=252.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
..+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555555443111 22333444444555555555555555554432 223444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHH
Q 006396 256 EALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI 335 (647)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 335 (647)
+|...|+++.... +.+...|..+..++...|++++|.+.|+++.+
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------------- 129 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------
Confidence 5555555554431 11233444555555555555555555555443
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006396 336 MSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVT 415 (647)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 415 (647)
.. +.+...+..+...+...|++++|.+.|+++.+..+. +..++..+...+...|++++|...|+++...+ +.+...
T Consensus 130 -~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 130 -YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 32 223445555666667777777777777777665322 45667777777777777777777777777653 445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
+..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 7777778888888888888888777653 3356777888888888888888888888888754 4556778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
.|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|+..
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888742 4467888888888888899999998888888742 44566888888888899999999999
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
++++++.. |....+|..++.++...|+
T Consensus 362 ~~~a~~~~---------------------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRIS---------------------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTC---------------------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhC---------------------CCCHHHHHhHHHHHHHccC
Confidence 99888766 6678888888888877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-28 Score=237.31 Aligned_cols=378 Identities=17% Similarity=0.050 Sum_probs=248.2
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLY----NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQS 77 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 77 (647)
++..+.+.|++++|...++++++.. |+......++. ..|+++.|...++.++...+ .++.+|..++.++...|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCC
Confidence 5677888888888888888888764 44333333333 67888888888888776444 66777888888888888
Q ss_pred ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTN 157 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (647)
++++|+..|+++....+ .+..++..++.++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888888876542 245577788888888888888888888887764 3445566777777777888888888888
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 006396 158 DMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN 237 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (647)
++.+.. +.+..+|..+...+...|++++|...|+++...++. +...+..+...+...|++++|...++........ +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 877652 345677777777777778888888877777765322 3456666777777777777777777777665322 4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 006396 238 VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317 (647)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (647)
..++..+..++...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+.. +
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p------------ 302 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P------------ 302 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c------------
Confidence 5566667777777777777777777776653 2234566666666777777777777776666542 2
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 397 (647)
.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|
T Consensus 303 -----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 303 -----------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp -----------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred -----------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 234445555555555555555555555555432 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006396 398 RRLLDTIKLHGLEPSAVTYTTFMNAYCEE 426 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 426 (647)
...++++.+.. +.+...+..+...+...
T Consensus 359 ~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 359 LMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 55555555432 22344455555444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.8e-28 Score=237.59 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=127.8
Q ss_pred HHHHHHHCCCCCCcc-chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHH
Q 006396 365 LYRQLIEKRISPSIV-TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN---------IQRLLA 434 (647)
Q Consensus 365 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 434 (647)
+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .++|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 334444443333222 3555566666666666666666666666666666666666666654433 466677
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 435 LLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
+|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 515 EPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA 565 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (647)
.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||..+...+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777776677777777766666554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.3e-28 Score=237.84 Aligned_cols=204 Identities=15% Similarity=0.200 Sum_probs=160.6
Q ss_pred HHHHHHHhhcCCCCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 006396 82 AILFLQETAGKEFGPSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS---------MEE 151 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 151 (647)
+..+.+++.+.+..+.+. .++.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344555555555444443 5777888888888888888888888888888888888888888876554 577
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006396 232 QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285 (647)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (647)
.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888887765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-24 Score=221.60 Aligned_cols=458 Identities=9% Similarity=-0.055 Sum_probs=293.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...+...+..+...|++++|+..|++++... |+..++..++.++.+.|++++|...++++++.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456666777777777777777777776643 466677777777777777777777777777654 4455666777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEG 222 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (647)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------- 150 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE----------- 150 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH-----------
Confidence 777777777777777776653 23333333333333332222222222222211111111110000000
Q ss_pred HHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHH
Q 006396 223 LKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK---QDKVHKAIQLYNEM 299 (647)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 299 (647)
. .......|+.... ..+.......... .....+.+...+......+.. .|++++|...++++
T Consensus 151 --~---~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 151 --R---KDKQENLPSVTSM----ASFFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHH----HHHHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred --H---HhhccCCchhHHH----HHHHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 0 0000000111000 0010000000000 000001123333333443333 67777777777776
Q ss_pred Hh-----CCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006396 300 CS-----KRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI 374 (647)
Q Consensus 300 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 374 (647)
.+ ....|+.... .+.+...+..+...+...|++++|...++++.+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKL---------------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHTTTSTTCHHH---------------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhccCcccccc---------------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 65 2112221100 012455677788888899999999999999887654
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 375 SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVV 454 (647)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (647)
. ...+..+..++...|++++|...++.+.... +.+...+..+...|...|++++|...++.+.+.. +.+...+..+
T Consensus 269 ~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 344 (514)
T 2gw1_A 269 R--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQL 344 (514)
T ss_dssp C--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHH
T ss_pred c--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHH
Confidence 3 7777888888999999999999999888764 4567788888899999999999999999988764 3456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHh
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT----SATYNILIDGLC 529 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~ 529 (647)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. -.++ ...+..++.++.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 889999999999999999998864 5567788889999999999999999999988721 1111 348889999999
Q ss_pred h---cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 530 V---NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 530 ~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. .|++++|...++++.+.. +.+..++..++.++...|++++|...++++++..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9 999999999999999863 4567788999999999999999999999999987
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-25 Score=226.82 Aligned_cols=451 Identities=8% Similarity=-0.034 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICG 212 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (647)
...+......+.+.|++++|...|+++.+.+ |+...|..+..++...|++++|.+.++++.+.++. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4456667777778888888888888887753 57777777888888888888888888877766322 44567777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 006396 213 YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKA 292 (647)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 292 (647)
+...|++++|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+.........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 7778888888888877777643 23344444444444433333333333333333222222211110000000
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 006396 293 IQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK---LGNIGEAVQLYRQL 369 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 369 (647)
....|........+..+...... .....+.+...+......+.. .|+++.|...++++
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00111111111111000000000 000002234455555555554 89999999999998
Q ss_pred HH-----CCC--------CCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006396 370 IE-----KRI--------SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALL 436 (647)
Q Consensus 370 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (647)
.+ ... +.+..++..+...+...|++++|...++.+.... |+...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87 311 1234567788889999999999999999998864 33888899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006396 437 QEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP 516 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 516 (647)
+.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9998764 4467788899999999999999999999999864 5567889999999999999999999999999842 33
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCccc
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT------KVAYTTIIKAHCA---EGDVHKAMTFFCQMVEKGFEIS 587 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 587 (647)
+...+..++.++...|++++|...++++.+.. +.+ ..++..++.++.. .|++++|...++++++..
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---- 445 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---- 445 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----
Confidence 57889999999999999999999999998742 112 3388999999999 999999999999999987
Q ss_pred chhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 588 IRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..++..++.++.+.|++++|.+.++++++.++.
T Consensus 446 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 446 -----------------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred -----------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 778999999999999999999999999999987653
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.9e-23 Score=213.70 Aligned_cols=439 Identities=11% Similarity=0.046 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICG 212 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (647)
...+..+...+.+.|++++|.+.|+++.+.. +.+...|..+..++...|++++|.+.++++...++. +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 3456666667777777777777777776652 346666777777777777777777777776665322 44556666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCHH
Q 006396 213 YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGL--KPDLVTYSILIRGLCKQDKVH 290 (647)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 290 (647)
+...|++++|.+.|+ ..... |+ .....+..+...+....|...++++..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 667777777777665 22221 11 111223333344444556666665543210 000011122233333344444
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH--------HHhcCCHHHH
Q 006396 291 KAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDG--------YVKLGNIGEA 362 (647)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a 362 (647)
.+...+..... .+. .+. .....+... ....|++++|
T Consensus 178 ~~~~~~~~~~~----~~~-~~~-------------------------------~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 178 LEVSSVNTSSN----YDT-AYA-------------------------------LLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHHTSCCCCS----SCS-SHH-------------------------------HHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc----ccc-HHH-------------------------------HHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33322222111 110 000 011111111 1223577888
Q ss_pred HHHHHHHHHCCCCCCc-------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006396 363 VQLYRQLIEKRISPSI-------VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435 (647)
Q Consensus 363 ~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 435 (647)
..+++++.+..+. +. .++..+...+...|++++|...++.+... .|+...+..+...+...|++++|...
T Consensus 222 ~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 222 TDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888765332 22 24556667788889999999999998875 45578888888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006396 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 515 (647)
++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+.. +
T Consensus 299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99988764 4567788999999999999999999999999864 5567888999999999999999999999999842 3
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNI-----SLTKVAYTTIIKAHCAE----------GDVHKAMTFFCQMV 580 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 580 (647)
.+...+..++.++...|++++|...++++.+... ......+...+.++... |++++|+..+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 3578899999999999999999999999986420 11122355566778888 99999999999999
Q ss_pred HcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 581 EKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
+.. |.+..++..++.+|.+.|++++|.+.++++++..+..
T Consensus 456 ~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 456 ELD---------------------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HhC---------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 987 7789999999999999999999999999999876543
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=4.8e-23 Score=210.76 Aligned_cols=432 Identities=12% Similarity=0.047 Sum_probs=236.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...+..++..+...|++++|+..|++++...+ .++.++..++.++.+.|++++|...|+++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 35677778888888888888888888887653 367788888888888888888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS--DPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 220 (647)
+...|++++|...|+.+ .. .|+ .....+..+...+....+...++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88888888888888633 22 222 222223344455556677788877755411 111122233444455555555
Q ss_pred HHHHHHHHHHhCCCCcCcc-cHHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCC--------HhhHHHHHHHH
Q 006396 221 EGLKLREVMLSQGFKLNVI-AYSVLLSSMCK--------SGRIDEALGLLYEMEAVGLKPD--------LVTYSILIRGL 283 (647)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~ 283 (647)
.+...+...... .+... ....+...+.. .|++++|..+++++.+. .|+ ..++..+...+
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 554433322211 11100 12222222211 24667777777777654 222 12345555566
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006396 284 CKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAV 363 (647)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 363 (647)
...|++++|...++++... .|+...+..+...+...|++++|...++.+.... +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 6667777777777776654 3334455555555566666666666666655543 234555566666666666666666
Q ss_pred HHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 364 QLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
..++++.+..+. +...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...|+.+.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 666666554322 34455555555556666666666665555432 3334455555555555555555555555544321
Q ss_pred -----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 444 -----IGPTHVTYTVVIKGLCKQ----------WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQ 508 (647)
Q Consensus 444 -----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 508 (647)
.......+......+... |++++|...++++.+.. +.+...+..+..+|...|++++|...|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 001111122223333333 55555555555555432 33344445555555555555555555555
Q ss_pred HHh
Q 006396 509 MWL 511 (647)
Q Consensus 509 ~~~ 511 (647)
+.+
T Consensus 488 al~ 490 (537)
T 3fp2_A 488 SAI 490 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.1e-22 Score=202.82 Aligned_cols=349 Identities=12% Similarity=0.038 Sum_probs=228.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (647)
+...+..++..+.+.|++++|...|+++.+.. +.+...|..+..++...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 55566677777777777777777777776542 3356666777777777777777777777776642 223344444455
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCC
Q 006396 317 GLCEKEMITEARMYFDSLIMSNCIQDV---VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGK 393 (647)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 393 (647)
.+...|++++|...|+.+.... +.+. ..+..+...+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 5555555555555555554432 1122 3333332221000 01122334666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLED 473 (647)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 473 (647)
+++|...++.+.... +.+...+..+..+|...|++++|...|+.+.+.. +.+..++..+...+...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776543 4456677777777777777777777777776543 34566777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhh
Q 006396 474 MYVIGVTPDQITYNTI------------IRSFCKCKDLRKAFQLLNQMWLHNLEPT-----SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 474 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 536 (647)
+.+.. +.+...+..+ +..+...|++++|..+|+++.+ ..|+ ...+..++.++.+.|++++
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 77643 3334444333 7788888999999999998887 3444 4477888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
|...++++.+.. +.+..+|..++.+|...|++++|...++++++.. |.+..++..++.
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~ 371 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN---------------------ENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------------------SSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------cchHHHHHHHHH
Confidence 999999988753 4467788889999999999999999999998866 556677776663
Q ss_pred H------------HHcCC-----CHHHHHHHHHH-HHhCC
Q 006396 617 A------------FHQGG-----DLGSVFELAAV-MIKSG 638 (647)
Q Consensus 617 ~------------~~~~g-----~~~~A~~~~~~-~~~~~ 638 (647)
+ |...| +.+++.+.+++ +++..
T Consensus 372 ~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 3 44444 55667777776 55543
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=6.8e-22 Score=197.24 Aligned_cols=384 Identities=11% Similarity=0.045 Sum_probs=246.1
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
+...+.+.... .+.+...+..++..+...|++++|..+|+++..... .+..++..+...+...|++++|...++.+.+
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444433 244566677777777777777777777777766522 2456667777777777777777777777776
Q ss_pred CCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H---hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006396 232 QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD-L---VTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN 307 (647)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 307 (647)
.+.. +...+..++.++...|++++|...|+++.+. .|+ . ..+..++..+...+
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-------------------- 145 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQR-------------------- 145 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHH--------------------
Confidence 6422 4556667777777777777777777777664 233 2 34444433311110
Q ss_pred cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHH
Q 006396 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYG 387 (647)
Q Consensus 308 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (647)
+......+...|++++|...++.+.... +.+...+..+..+|...|++++|...|+++.+..+ .+..++..+..+
T Consensus 146 ---~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 220 (450)
T 2y4t_A 146 ---LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTL 220 (450)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1112233455666666666666666543 34566677777777777777777777777766532 255667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTF------------MNAYCEEGNIQRLLALLQEMETKAIGPT-----HVT 450 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 450 (647)
+...|++++|...++.+.... +.+...+..+ ...+...|++++|...|+.+.+. .|+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 777777777777777776542 2233333333 77888889999999999988875 344 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH---
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILID--- 526 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~--- 526 (647)
+..+..++.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+ +.| +...+..+..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 7788888889999999999999988763 55778888999999999999999999999988 455 4666666663
Q ss_pred ---------HHhhcC-----ChhhHHHHHHH-HHHcCCCCCH-----------HHHHHHHHHHHhcCCHHHHH
Q 006396 527 ---------GLCVNG-----DLKNADCLLVS-LQEHNISLTK-----------VAYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 527 ---------~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~ 573 (647)
.|...| +.+++.+.+++ ..+. .|+. ..+..+..+|...||.+++.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344444 56677888876 4432 2321 15566666776666666543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=8.3e-20 Score=176.16 Aligned_cols=316 Identities=9% Similarity=0.024 Sum_probs=167.0
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006396 272 DLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMID 351 (647)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 351 (647)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556677777778888888888888777652 3345556666666677777777777777766653 334566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 352 GYVKLGNIGEAVQLYRQLIEKRIS--PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
++...|++++|...++++.+..+. .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777776654320 12222222210000 00011123444455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 2334445555555555555555555555555432 334445555555555555555555555555
Q ss_pred HhCCCCC-CHHHHH------------HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHH
Q 006396 510 WLHNLEP-TSATYN------------ILIDGLCVNGDLKNADCLLVSLQEHNISLTKV----AYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 510 ~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 572 (647)
.+. .| +...+. .++..+...|++++|...++++.+.. +.+.. .+..++.++...|++++|
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 542 22 222221 12444555555555555555555532 11221 233345555555555555
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+..++++++.. |.+..++..++.++...|++++|.+.++++++.+
T Consensus 292 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQME---------------------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC---------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555544 4455555555555555555555555555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=8.6e-20 Score=176.07 Aligned_cols=332 Identities=11% Similarity=0.035 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (647)
++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567888999999999999999999998864 3367889999999999999999999999998763 345677888899
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH
Q 006396 317 GLCEKEMITEARMYFDSLIMSNCI--QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (647)
.+...|++++|...++.+...... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999876420 23444443321110 00122334455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 395 ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
++|...++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666655542 3445556666666666666666666666666543 345556666666666666666666666666
Q ss_pred HHcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhhcCChhhH
Q 006396 475 YVIGVTPDQITYN------------TIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-S----ATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 475 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 537 (647)
.+.. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..++.++...|++++|
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6542 22333222 3366688889999999999998883 333 3 3355678889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
...++++.+.. +.+..++..++.++...|++++|...++++++.. |.+..++..+..+
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---------------------p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN---------------------ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCChHHHHHHHHH
Confidence 99999998853 4467788999999999999999999999999876 6667777777666
Q ss_pred HHc
Q 006396 618 FHQ 620 (647)
Q Consensus 618 ~~~ 620 (647)
...
T Consensus 350 ~~~ 352 (359)
T 3ieg_A 350 QRL 352 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=4.7e-18 Score=170.58 Aligned_cols=352 Identities=12% Similarity=0.035 Sum_probs=245.9
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCH
Q 006396 202 DIVTYTVLICGYCQ----IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCK----SGRIDEALGLLYEMEAVGLKPDL 273 (647)
Q Consensus 202 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 273 (647)
+...+..+...|.. .+++++|.+.|+...+.| ++..+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 455555655555555542 34445555555555 555666666666555543 34
Q ss_pred hhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCcHHH
Q 006396 274 VTYSILIRGLCK----QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCE----KEMITEARMYFDSLIMSNCIQDVVL 345 (647)
Q Consensus 274 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 345 (647)
..+..+...|.. .+++++|+..|++....+ +...+..+...|.. .++.++|.++|+.....+ ++..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444455555555 556666666666665543 33344444444544 556777777777666653 5666
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 346 YNIMIDGYVK----LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 346 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777777776 788888888888887764 44566667777765 778888888888887653 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006396 418 TFMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ-----WKLQEAVQLLEDMYVIGVTPDQITYNT 488 (647)
Q Consensus 418 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 488 (647)
.+...|.. .+++++|...|+...+.+ +...+..+...+... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 67777777 788999999998887764 455666777777766 89999999999988865 4566777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 489 IIRSFCKCK---DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 489 l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
+...|...| ++++|.++|++..+.+ ++..+..|...|.. .+++++|..+|+++.+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777756 7889999999998853 67888888988888 889999999999999865 5678888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 006396 562 AHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
.|.. .+++++|..+|+++.+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888 899999999999999876
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.6e-17 Score=166.71 Aligned_cols=366 Identities=13% Similarity=0.043 Sum_probs=308.8
Q ss_pred HHHHHHHHHhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHH
Q 006396 222 GLKLREVMLSQGFKLNVIAYSVLLSSMCK----SGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK----QDKVHKAI 293 (647)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 293 (647)
+.+.++...+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555543 66777888888887 899999999999998864 66778888888988 89999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHH
Q 006396 294 QLYNEMCSKRISPNSFAHGAILLGLCE----KEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK----LGNIGEAVQL 365 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 365 (647)
..|++..+.+ +...+..+...|.. .+++++|..+|+.....+ ++..+..+...|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 55666777777777 789999999999998875 67778888888887 7899999999
Q ss_pred HHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006396 366 YRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE----EGNIQRLLALLQ 437 (647)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 437 (647)
|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998874 66778888888887 899999999999998864 56778888888886 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 006396 438 EMETKAIGPTHVTYTVVIKGLCK----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC-----KDLRKAFQLLNQ 508 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~ 508 (647)
...+.+ +...+..+...+.. .+++++|...+++..+.| +...+..+...|... +++++|..++++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998864 55667777777777 899999999999998754 556777888888877 899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVE 581 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 581 (647)
..+.+ +...+..+...|...| ++++|.++++++.+.| +...+..+...|.. .+++++|+.+|+++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99854 5677888888888766 8899999999999864 67889999999998 8999999999999998
Q ss_pred cCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC
Q 006396 582 KGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ----GGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+ ++.++..++..|.+ .++.++|.++++++.+.++.
T Consensus 396 ~~-----------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG-----------------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT-----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC-----------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 47789999999998 89999999999999987754
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.7e-19 Score=171.64 Aligned_cols=294 Identities=12% Similarity=0.019 Sum_probs=220.7
Q ss_pred CCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH
Q 006396 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384 (647)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (647)
+.+...+......+...|++++|..+++.+.... +.+...+..++.++...|++++|...++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 3344555555555666666666666666665543 233444555666677778888888888777775432 56667777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 385 IYGFCKNG-KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK 463 (647)
Q Consensus 385 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (647)
...+...| ++++|...++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777888 7888888888877653 4456677788888888888888888888887753 3345666778888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhhcCChh
Q 006396 464 LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN--------LEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..++.+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999998888764 5667788888889999999999999998887621 1234678889999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVML 615 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 615 (647)
+|...++++.+.. +.+..++..++.++...|++++|...++++++.. |.+...+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~ 311 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR---------------------RDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---------------------SCCHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC---------------------CCchHHHHHHH
Confidence 9999999999863 4567789999999999999999999999998876 77889999999
Q ss_pred HHH-HcCCCHH
Q 006396 616 IAF-HQGGDLG 625 (647)
Q Consensus 616 ~~~-~~~g~~~ 625 (647)
.++ ...|+.+
T Consensus 312 ~~~~~~~g~~~ 322 (330)
T 3hym_B 312 HCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTTTC--
T ss_pred HHHHHHhCchh
Confidence 988 4566644
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=3e-16 Score=164.06 Aligned_cols=440 Identities=14% Similarity=0.125 Sum_probs=314.5
Q ss_pred cCHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCC--CCcCHHhHHHH
Q 006396 29 VSIQTYNSLLYNLRHTDIMWDLYDDIKVSET--PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKE--FGPSVVSLNAI 104 (647)
Q Consensus 29 ~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 104 (647)
.|...|..++...... =+++.+....... ..+|.--...++.|...|.+.+|+++++++...+ +..+...-+.+
T Consensus 951 ~d~~lW~~vl~~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 4778888888632211 1223333222111 2456666778889999999999999999998432 12344556667
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 006396 105 MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQI 184 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (647)
+....+. +..+..++..+.... + ...+...+...|.+++|..+|++.. ......+.+ +...+++
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nl 1092 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNL 1092 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhH
Confidence 7766666 556666666655422 1 3347777888999999999999872 122222333 3377889
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
++|.++.++.. ++.+|..+..++...|++++|.+.|.+. .+...|..++.++.+.|++++|.+.|...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988652 5778999999999999999999999664 37788899999999999999999999988
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 006396 265 EAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV 344 (647)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 344 (647)
.+.. ++....+.++.+|++.+++++..... . .++...+..+...+...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 7763 34444456888999999888544332 2 345567778889999999999999999874 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (647)
.|..+..++.+.|+++.|.+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHH
Confidence 78899999999999999999998872 6688888999999999999888766543 345667778999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhc
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ--WKLQEAVQLLEDMYVIGVTP------DQITYNTIIRSFCKC 496 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 496 (647)
+.|.+++|+.+++...... +-....|+.+...+++. ++..++.+.|..-.. +++ +...|..+...|.+.
T Consensus 1292 ~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877654 33444666666666653 344445555543322 222 456789999999999
Q ss_pred CCHHHHHHHHH-------------HHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 497 KDLRKAFQLLN-------------QMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 497 ~~~~~A~~~~~-------------~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
|+++.|....- ..+. -..++..|...+..|...+
T Consensus 1369 ~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1369 EEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 99999884322 2221 1336777766666666444
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=3e-16 Score=163.99 Aligned_cols=315 Identities=11% Similarity=0.054 Sum_probs=202.9
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
+.++...|.+++|..+|+++.. .....+.++...++++.|.++++++ .++.+|..++.++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 5667777888888888887642 2344455555677777777777755 4466777888888888888888
Q ss_pred HHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 83 ILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
+..|.++ .+...|..++.++.+.|++++|.+.+....+.. +++.....++.+|.+.+++++.... .+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 8887664 256667777888888888888888887776653 3333444577777777777643322 21
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHH
Q 006396 163 GVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYS 242 (647)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (647)
.++...|..+...+...|++++|..+|... ..|..++..+.+.|++++|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 345566667777777788888888877764 257777777888888888887777662 556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh--h
Q 006396 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLC--E 320 (647)
Q Consensus 243 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 320 (647)
.+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +.....+..+...++ +
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 77777777777777777655422 245556677777777888888888887766442 222223333333333 2
Q ss_pred cCCHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006396 321 KEMITEARMYFDSLIMSN----CIQDVVLYNIMIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (647)
-++..++.+.|..-.... ...+...|..+...|.+.|+++.|..
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334444444444332210 00134566667777777777777664
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=9.3e-18 Score=170.27 Aligned_cols=432 Identities=12% Similarity=0.085 Sum_probs=296.6
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006396 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFK 235 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (647)
|++..+. .|-+...|..++. +...|++++|..+|++++... +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 4455444 3557889999998 477899999999999998762 2256678899999999999999999999999874
Q ss_pred cCcccHHHHHHHH-HhcCChhHHHH----HHHHHHH-CCCCC-CHhhHHHHHHHHHc---------cCCHHHHHHHHHHH
Q 006396 236 LNVIAYSVLLSSM-CKSGRIDEALG----LLYEMEA-VGLKP-DLVTYSILIRGLCK---------QDKVHKAIQLYNEM 299 (647)
Q Consensus 236 ~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 299 (647)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666777776533 45677777665 6666554 35443 45667777766554 67888999999988
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQL------IEKR 373 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~ 373 (647)
++. |... ...+...+.. ++... +..+...++. ...+++..|..+++.. .+..
T Consensus 157 l~~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVN---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTS---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred Hhc---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 872 3221 1111111111 00000 0001111111 1234455666555542 2221
Q ss_pred ---CCCCc--------cchHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cC
Q 006396 374 ---ISPSI--------VTFNSLIYGFCKN----GKV----ADARRLLDTIKLHGLEPSAVTYTTFMNAYCE-------EG 427 (647)
Q Consensus 374 ---~~~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 427 (647)
++|+. ..|...+...... ++. ..+..+|++..... +.+...|..++..+.. .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 23321 2333333322221 222 36777888887652 5567888888888775 68
Q ss_pred CHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCC
Q 006396 428 NIQ-------RLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD-Q-ITYNTIIRSFCKCKD 498 (647)
Q Consensus 428 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~ 498 (647)
+++ +|..+|+...+.-.+.+...|..++..+.+.|++++|..+|+++++. +|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 877 89999999886322446788889999999999999999999999985 443 3 578888888889999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 499 LRKAFQLLNQMWLHNLEP-TSATYNILIDG-LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 499 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
+++|..+|++..+. .| +...+...+.. +...|++++|..+|+++++.. +.+...|..++..+...|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999999984 33 33333333322 346899999999999999853 446779999999999999999999999
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPP--DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++++... +.+| ....|...+......|+.+.+..+.+++.+.-+
T Consensus 449 ~~al~~~-------------------~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 449 ERVLTSG-------------------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHSC-------------------CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHhcc-------------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999875 1122 255888889999999999999999999887543
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.8e-19 Score=169.26 Aligned_cols=273 Identities=9% Similarity=-0.016 Sum_probs=237.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006396 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 420 (647)
.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|...++.+.... +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45556777888899999999999999999887543 56677778899999999999999999998763 45678888999
Q ss_pred HHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 421 NAYCEEG-NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDL 499 (647)
Q Consensus 421 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 499 (647)
..+...| ++++|...|+...+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999998764 4456788999999999999999999999999874 55567788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN--------ISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. .+....++..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999842 3468899999999999999999999999998731 13345689999999999999999
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|+..++++++.. |.+..++..++.++.+.|++++|.+.++++++.++
T Consensus 255 A~~~~~~a~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLI---------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHS---------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhC---------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999987 77889999999999999999999999999988654
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.3e-17 Score=167.42 Aligned_cols=435 Identities=11% Similarity=0.019 Sum_probs=272.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 006396 51 YDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLH 130 (647)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 130 (647)
|++.+...| .+..+|..++. +.+.|++++|+.+|++++... +.+...|...+..+.+.|++++|..+|+++++. .
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 455555443 67788888887 477888999999999888764 336778888888888888999999999888876 4
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHhhC-CCC-CChhhHHHHHHHHHh---------cCChhhHHHHHHHH
Q 006396 131 PDAFSYNILIHGL-CIAGSMEEALE----FTNDMGRH-GVE-PDAITYSILAKGFHL---------LSQISGAWKVIQKL 194 (647)
Q Consensus 131 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 194 (647)
|+...|...+... ...|++++|.+ +|+..... |.. ++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777766533 34566666554 66665442 332 345666666665543 45566666666666
Q ss_pred HhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----
Q 006396 195 LIKGSDPDI---VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA----- 266 (647)
Q Consensus 195 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 266 (647)
+.. |+. ..|..........|. ..+.. ++. ...+++..|..++.++..
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 542 221 111111110000000 00000 000 012334444444443211
Q ss_pred -CC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh----cCC----HHHHHHHHHHH
Q 006396 267 -VG---LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCE----KEM----ITEARMYFDSL 334 (647)
Q Consensus 267 -~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~----~~~a~~~~~~~ 334 (647)
.. ++|+.. ........ .+...+..... .++ ...+...|++.
T Consensus 212 ~~~~~~~~p~~~------------~~~~~~~~---------------~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 212 DRNAPSVPPQNT------------PQEAQQVD---------------MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp CSSSCCCCCC--------------CCHHHHHH---------------HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCC------------hhHHHHHH---------------HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 00 111100 00000001 11111111000 111 13555666666
Q ss_pred HHcCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 006396 335 IMSNCIQDVVLYNIMIDGYVK-------LGNIG-------EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRL 400 (647)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (647)
.... +.++..|..++..+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+
T Consensus 265 l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6543 4467777777777665 68876 8899999888632333567788888888889999999999
Q ss_pred HHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 006396 401 LDTIKLHGLEPS-A-VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG-LCKQWKLQEAVQLLEDMYVI 477 (647)
Q Consensus 401 ~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 477 (647)
|+.+.+. .|+ . ..|..++..+.+.|++++|..+|+...+.. +.+...|...+.. +...|+.++|..+|++.++.
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 9998875 443 3 578888888888899999999999988753 2222333322222 33589999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 478 GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+..++.+.
T Consensus 421 ~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 421 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp H-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 5567889999999999999999999999999852 2332 558888888888899999999999999874
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=4.5e-19 Score=171.60 Aligned_cols=318 Identities=11% Similarity=0.004 Sum_probs=189.3
Q ss_pred HHHccCCHHHHHH-HHHHHHhCCC-CC--CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006396 282 GLCKQDKVHKAIQ-LYNEMCSKRI-SP--NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG 357 (647)
Q Consensus 282 ~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (647)
.+...|++++|+. .+++...... .| +...+..+...+...|++++|...++.+.... +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444566666665 5554443210 01 22334445555555555555555555555443 234444555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006396 358 NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (647)
++++|...++++.+..+. +..++..+..++...|++++|...++.+.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 555555555555444221 34444444455555555555555555444432 1111100000000 0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006396 438 EMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 515 (647)
.. ..+ ...+..+. .+...|++++|...++++.+.. +. +..++..+...+...|++++|...++++.+.. +
T Consensus 177 ---~~-~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 177 ---GG-AGL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp --------------CTTH-HHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred ---hh-hcc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00 000 00111223 3337899999999999999864 33 57889999999999999999999999999842 3
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHH
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSF 595 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 595 (647)
.+...+..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|...++++++.. |+....
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~---- 321 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGP---- 321 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC-------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCc----
Confidence 358899999999999999999999999999863 4567799999999999999999999999998764 000000
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 596 FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.....+....+|..++.+|...|++++|..++++.+
T Consensus 322 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 ----RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ----cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 000011227899999999999999999999887644
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=7.7e-17 Score=161.61 Aligned_cols=383 Identities=12% Similarity=-0.030 Sum_probs=205.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC-----C---CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-
Q 006396 203 IVTYTVLICGYCQIGNVEEGLKLREVMLSQ-----G---FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV-----G- 268 (647)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 268 (647)
...|+.+...+...|++++|++.|++..+. + ......+|+.+..+|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777788888888877776542 0 1112345677777777777777777777766432 0
Q ss_pred CCC-CHhhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHH---HhhcCCHHHHHHHHHHHHHcCCCC
Q 006396 269 LKP-DLVTYSILIRGLCK--QDKVHKAIQLYNEMCSKRISPN-SFAHGAILLG---LCEKEMITEARMYFDSLIMSNCIQ 341 (647)
Q Consensus 269 ~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 341 (647)
..+ ...++.....++.. .+++++|+..|++..+. .|+ +..+..+... +...++.++|.+.++...... +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011 12334433333332 34567777777776654 233 2222222222 233445555555555555543 22
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 342 DVVLYNIMIDGYVK----LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 342 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
+...+..+...+.. .+++++|.+.+++.....+. +..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 33444433333332 34455566666655554322 44455555556666666666666666555432 23344444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK 497 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 497 (647)
.+..+|...+... .... . ..........+..+.|...+++..+.. +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 4444432211100 0000 0 000000111233567888888877754 555667788888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTS--ATYNILID-GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
++++|...|+++++....|.. ..+..+.. .+...|++++|+..|+++++ +.|+...... ....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHH
Confidence 999999999998884333221 12333333 23467889999999999988 4455433222 2234556
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++++.+..+ |.++.+|..++.+|...|++++|++.++++++.++
T Consensus 418 ~~~~~l~~~---------------------p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 418 IAKMRLSKN---------------------GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHC---------------------C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 677777766 78899999999999999999999999999998765
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=2.9e-18 Score=165.58 Aligned_cols=273 Identities=11% Similarity=-0.050 Sum_probs=190.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (647)
.+..+...+.+.|++++|...|+++++..+. +..++..+..++...|++++|...|+++.... +.+...+..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3445555566666666666666666654322 45556666666666666666666666666542 344566666667777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPT-----------HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP--DQITYNTIIR 491 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 491 (647)
..|++++|...|+.+.+.. |+ ...+..+...+...|++++|...++++.+.. +. +..++..+..
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 7777777777777665531 21 2234455778889999999999999999864 33 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
.|...|++++|...++++++.. +.+..+|..++.+|...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999842 3368899999999999999999999999999863 4457799999999999999999
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
|+..++++++..-... .-. .......+..+|..++.++...|+.+.|.++.++
T Consensus 300 A~~~~~~al~~~~~~~--~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSR--NQQ-------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccC--CCc-------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999987540000 000 0000011367899999999999999999887765
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=5.6e-18 Score=163.88 Aligned_cols=230 Identities=13% Similarity=-0.044 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
.+..++..+.+.|++++|...|+++++.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444444455555555554444442 3334444444444444455555555444444432 223444444444444
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcchHHH---------------HHHHHHhcCChHHHHHHHHHHHhCCCCc-CcccHHH
Q 006396 180 LLSQISGAWKVIQKLLIKGSDPDIVTYTV---------------LICGYCQIGNVEEGLKLREVMLSQGFKL-NVIAYSV 243 (647)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 243 (647)
..|++++|.+.++++...... +...+.. .+..+...|++++|...++.+.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 445555555444444443211 1111110 1222225555555655555555542211 2344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCC
Q 006396 244 LLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEM 323 (647)
Q Consensus 244 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 323 (647)
+..++...|++++|...++++.... +.+..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 5555555555555555555555432 2234455555555555555555555555554431 1222333333333334444
Q ss_pred HHHHHHHHHHH
Q 006396 324 ITEARMYFDSL 334 (647)
Q Consensus 324 ~~~a~~~~~~~ 334 (647)
+++|...++..
T Consensus 301 ~~~A~~~~~~a 311 (368)
T 1fch_A 301 HREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=8.3e-18 Score=159.73 Aligned_cols=260 Identities=12% Similarity=-0.013 Sum_probs=182.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN 428 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 428 (647)
+...+...|++++|..+++++.+..+. +...+..+..++...|++++|...++.+.... +.+...+..+...|...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 344444455555555555554443221 33444444455555555555555555544432 2344455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH-------------HH-HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYT-------------VV-IK-GLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSF 493 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~-------------~l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 493 (647)
+++|...++.+.+.. +.+...+. .+ .. .+...|++++|...++++.+.. +.+...+..+...+
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 555555555555432 11111111 11 22 3677889999999999999874 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (647)
...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999842 3358899999999999999999999999999863 456779999999999999999999
Q ss_pred HHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 574 TFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP------------DQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
..++++++.. |. +..+|..++.++.+.|++++|.+++++++
T Consensus 261 ~~~~~a~~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 261 KQLVRAIYMQ---------------------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHH---------------------TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHhC---------------------CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999865 33 57899999999999999999999987654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.6e-17 Score=153.96 Aligned_cols=291 Identities=11% Similarity=0.053 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHh
Q 006396 31 IQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK 110 (647)
Q Consensus 31 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (647)
......+|...|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+..
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 3455667778899999999999983 3458999999999999999999999763 466789999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 006396 111 LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKV 190 (647)
Q Consensus 111 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (647)
.|++++|+..++.+.+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988887775 5567888999999999999999887774 36778999999999999999999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 191 IQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9976 36899999999999999999999988 278899999999999999999966555422
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhc--CCHHHHHHHHHHHHHcCCCC------c
Q 006396 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEK--EMITEARMYFDSLIMSNCIQ------D 342 (647)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~ 342 (647)
........++..|.+.|.+++|+.+++...... +.....+..+...|++- ++..+..+.|.... ++++ +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHH
Confidence 233335578889999999999999999987653 22333444444444432 33344444433211 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQL 365 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~ 365 (647)
...|..+...|...++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 44566777777777777777653
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=2.2e-17 Score=152.16 Aligned_cols=254 Identities=13% Similarity=0.072 Sum_probs=173.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHH
Q 006396 316 LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVA 395 (647)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (647)
......|++..|+...+.+..............+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556778888887776654432111123445566778888888888776544 13445666777777777778888
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 396 DARRLLDTIKLHGL-EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 396 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
+|.+.++.+...+. +.+...+..+...+...|++++|+..++. +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888776553 33455666666777888888888887776 356677777777888888888888888888
Q ss_pred HHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 475 YVIGVTPDQITY---NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 475 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.++..++.++.++.+.|++++|...++++++.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 7753 433211 12223334457788888888888774 24467777888888888888888888888877753 44
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 006396 552 TKVAYTTIIKAHCAEGDVHK-AMTFFCQMVEKG 583 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 583 (647)
+..++..++.++...|+.++ +.++++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 56677777777878887765 467778887766
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=1.3e-17 Score=161.03 Aligned_cols=279 Identities=9% Similarity=-0.056 Sum_probs=190.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.+...+..++..+...|++++|+..|++++...+ .+..++..++..+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4456688899999999999999999999987654 367788999999999999999999999998874 55678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhH----------HHHHHHHHhcCChhhHHHHHHHHHhcCCC-CCcchHHHH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITY----------SILAKGFHLLSQISGAWKVIQKLLIKGSD-PDIVTYTVL 209 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 209 (647)
..|...|++++|.+.++++.+..+ .+...+ ..+...+...|++++|.+.++++...... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999998877421 122222 33466777777788888888777766322 145567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV 289 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 289 (647)
...+...|++++|.+.++.+.+... .+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 7777777777777777777776642 256677777777777777777777777776652 22466677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 290 HKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQ 368 (647)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 368 (647)
++|...|+++.+. .|+...... ......+...+..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~--~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSL--QRKSRNQQQ----------------------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHH--HHCC----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CcccCCCcc----------------------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777777776653 111000000 000011345677777778888888777776654
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.1e-16 Score=149.64 Aligned_cols=283 Identities=10% Similarity=0.067 Sum_probs=113.8
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEAL 153 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (647)
-+.|+.++|.+.++++. ++.+|..++.++.+.|++++|.+.|.+ .+|...|..++..+...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 46788999999999883 234899999999999999999999965 356678899999999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 154 EFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877664 4557888899999999999999888774 367779999999999999999999999866
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 006396 234 FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGA 313 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (647)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ ...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 478999999999999999999999882 7889999999999999999995544332 223333445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CccchHHHHH
Q 006396 314 ILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-RISP------SIVTFNSLIY 386 (647)
Q Consensus 314 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 386 (647)
++..|.+.|.++++..+++...... +.....|+-+..+|++- .+++..+.++..... +++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777776554 44555666665555543 233333333322211 1111 3444555555
Q ss_pred HHHhcCCHHHHHH
Q 006396 387 GFCKNGKVADARR 399 (647)
Q Consensus 387 ~~~~~~~~~~a~~ 399 (647)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 5555555555543
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.5e-16 Score=146.53 Aligned_cols=256 Identities=10% Similarity=0.015 Sum_probs=207.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSKRISPNS--FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG 357 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (647)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999999876543 3443 3446678899999999999986654 23567788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006396 358 NIGEAVQLYRQLIEKRISP-SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALL 436 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (647)
+.++|++.++++...+..| +...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 455666777899999999999999986 567888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006396 437 QEMETKAIGPTHVTY---TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN 513 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 513 (647)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9998863 553321 223344455689999999999999873 778889999999999999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHhhcCChhh-HHHHHHHHHHcCCCCCHH
Q 006396 514 LEP-TSATYNILIDGLCVNGDLKN-ADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 514 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 554 (647)
.| ++.++..++.++...|+.++ +.++++++.+. .|+..
T Consensus 230 -~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred -CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 45 68899999999999999976 57899999984 45544
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.5e-16 Score=156.82 Aligned_cols=387 Identities=12% Similarity=-0.009 Sum_probs=249.6
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C--CCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--
Q 006396 164 VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK-----G--SDP-DIVTYTVLICGYCQIGNVEEGLKLREVMLSQG-- 233 (647)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 233 (647)
.+.....|+.|..++...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445677999999999999999999999987642 1 123 24578899999999999999999999886531
Q ss_pred ----CC-cCcccHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCHHHHHHHHHHHHhCC
Q 006396 234 ----FK-LNVIAYSVLLSSMCKS--GRIDEALGLLYEMEAVGLKPDLVTYSILIRG---LCKQDKVHKAIQLYNEMCSKR 303 (647)
Q Consensus 234 ----~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 303 (647)
.. ....++..+..++... +++++|...|++..+... -+...+..+..+ +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 1234566665555554 569999999999988632 234445544444 345678889999999988753
Q ss_pred CCCCcccHHHHHHHHh----hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 304 ISPNSFAHGAILLGLC----EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 304 ~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
+.+...+..+...+. ..+++++|.+.++...... +.+...+..+...|...|++++|...+++..+..+. +..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 333444444444333 4567889999999988765 457788899999999999999999999999987433 455
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
++..+..+|...+.. ..... . ..........+.++.|...++...+.. +.+...+..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 666666555321111 11100 0 000111112234677888888877653 334556778888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQI--TYNTIIR-SFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 536 (647)
..|++++|...|++..+....+... .+..+.. .....|++++|+..|++.++ +.|+...... ....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHH
Confidence 9999999999999998864332221 2223332 23467999999999999998 5565332222 2234
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.+++++.++.+ +.+..+|..++.++...|++++|++.|+++++.+
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 556667777653 5567799999999999999999999999999877
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.2e-16 Score=151.74 Aligned_cols=279 Identities=10% Similarity=-0.021 Sum_probs=178.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006396 275 TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV 354 (647)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (647)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555556666666666666655432 2233334444444445555555555555444432 223444444444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHH
Q 006396 355 KLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF-MN-AYCEEGNIQRL 432 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a 432 (647)
..|++++|...++++.+..+. +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555544443211 11111111000 0000111111 22 36677888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99998887764 4467788888899999999999999999988864 566788899999999999999999999999884
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 513 NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL-----------TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
. +.+...+..++.+|...|++++|...++++.+..... +..++..++.++...|++++|..+++++++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 3358889999999999999999999999998743111 356889999999999999999999886554
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=1.9e-16 Score=139.39 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI 489 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (647)
+++...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|+..+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566677778888888888888888888887764 4566778888888888888888888888888764 5567778888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHH
Q 006396 490 IRSFCKC-----------KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYT 557 (647)
Q Consensus 490 ~~~~~~~-----------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 557 (647)
..++... |++++|...+++.++ ..| +...+..++.++...|++++|+..|+++++.+ .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 8888888 999999999999998 455 58889999999999999999999999999876 6788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.++.++...|++++|+..++++++.. |.+..++..++.++.+.|++++|.+.+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~---------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA---------------------PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999987 78899999999999999999999999988653
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.74 E-value=8.7e-16 Score=151.30 Aligned_cols=345 Identities=10% Similarity=-0.006 Sum_probs=198.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRI---DEALGLLYEMEAVGLKPDLVTYSILIRGLCKQ 286 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (647)
...+.+.|++++|.++|+...+.| ++..+..+...|...|+. ++|...|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444555555555555554443 233333344444444444 5555555554432 233333444423332
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006396 287 D-----KVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMI---TEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGN 358 (647)
Q Consensus 287 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (647)
+ ++++|+..|++....|. ...+..+...|...+.. ..+.+.+......+ ++.....+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 2 44555555555555431 22344444444333322 22333444433333 33445556666666665
Q ss_pred HHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHH
Q 006396 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNG---KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEE----GNIQR 431 (647)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 431 (647)
++.+......+...-...++..+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444433222222212224447777888888888 8888888888888876 55666556667776554 68889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHH
Q 006396 432 LLALLQEMETKAIGPTHVTYTVVIKG-L--CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK-----DLRKAF 503 (647)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~ 503 (647)
|...|+... .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 999998877 43 44555566655 3 45789999999999988766 6667777777776 45 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006396 504 QLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTF 575 (647)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 575 (647)
.+|++.. . -++..+..|...|.. ..++++|..+|++..+.| +......+...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9998886 3 367777788877776 348999999999998865 34556667766664 4589999999
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
|+++.+.|
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 99998877
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-15 Score=137.48 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGL--EPS----AVTY 416 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 416 (647)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+..... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455556666666666666666666666554 4555555566666666666666666655544210 011 2444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..+...|...|++++|...|+..... .|+. ..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~ 118 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKL 118 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHH
Confidence 44444445555555555555544442 2221 223334
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|++++|...++++... .| +...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|+..
T Consensus 119 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555542 22 24445555555555555555555555555532 33344555555555555555555555
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
++++++.. |.+...+..++.++.+.|++++|.+.++++++.
T Consensus 196 ~~~al~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKD---------------------PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555544 444555555555555555555555555555543
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=9e-16 Score=135.02 Aligned_cols=199 Identities=17% Similarity=0.060 Sum_probs=126.0
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 60 PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
|+++..+..++..+...|++++|+..|++++...+. +...+..+...+.+.|++++|...|+++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 466777888888888888888888888888876543 66778888888888888888888888888764 4566677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHH
Q 006396 140 IHGLCIA-----------GSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTV 208 (647)
Q Consensus 140 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (647)
..++... |++++|...+++..+.. |.+...|..+..++...|++++|++.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 67777777776666542 2345566666666666666666666666666554 35555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 209 LICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
+..++...|++++|...++...+..+. +...+..+..++...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666655322 4445555666666666666666655543
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=6.2e-15 Score=145.20 Aligned_cols=347 Identities=13% Similarity=0.041 Sum_probs=231.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 006396 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV---HKAIQLYNEMCSKRISPNSFAHGAILLGLC 319 (647)
Q Consensus 243 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (647)
.+...+.+.|++++|.+.|++..+.| +...+..+...|...|+. ++|+..|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999998875 334445566666777887 8999999998754 5556666666454
Q ss_pred hcC-----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCccchHHHHHHHHhc
Q 006396 320 EKE-----MITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG---EAVQLYRQLIEKRISPSIVTFNSLIYGFCKN 391 (647)
Q Consensus 320 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (647)
..+ +.++|..+|+.....+.. ..+..+...|...+..+ .+.+.+......+ ++.....+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 444 788999999999987633 25666777777665533 3455555555443 456677788888887
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCH
Q 006396 392 GKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG---NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ----WKL 464 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 464 (647)
+.++++......+.+.-...++..+..+...|...| ++++|+..|+...+.| +++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 755544444332222111223337888888899999 8999999999999887 56666666777777654 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-----Chhh
Q 006396 465 QEAVQLLEDMYVIGVTPDQITYNTIIRS-F--CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG-----DLKN 536 (647)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~ 536 (647)
++|...|++.. +-+...+..+... + ...+++++|..+|++..+.| ++..+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 3455666777776 4 56899999999999999865 6778888888887 55 9999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICE 612 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (647)
|..+|++.. . .+...+..+...|.. ..++++|..+|+++.+.| ++.+..
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----------------------~~~A~~ 358 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----------------------QNSADF 358 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----------------------CTTHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----------------------hHHHHH
Confidence 999999987 3 366788888877776 349999999999999876 233455
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 006396 613 VMLIAFHQ----GGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 613 ~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (647)
.++..|.. ..+.++|..+++++.+.|
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 56655553 236666666666666554
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=9e-14 Score=127.69 Aligned_cols=218 Identities=11% Similarity=0.002 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 383 SLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGL 458 (647)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (647)
.+...+...+++++|...|++..+ +.+...+..+...|.. .+++++|...|+...+.+ +...+..+...+
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 333344444444444444444443 1122333344444444 444444444444444432 334444444444
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006396 459 CK----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK----CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV 530 (647)
Q Consensus 459 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (647)
.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 44 445555555555444432 34444444444444 455555555555555432 33444444444444
Q ss_pred ----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhC
Q 006396 531 ----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSN 602 (647)
Q Consensus 531 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (647)
.+++++|...++++.+.+ +...+..+...+.. .+++++|+..++++.+.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------- 216 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------------------- 216 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-------------------
Confidence 455555555555555432 23444455555555 555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 006396 603 GFPPDQEICEVMLIAFHQ----GGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (647)
+ ...+..++.+|.. .|++++|.+.++++.+.|
T Consensus 217 --~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 --N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp --C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred --C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 1 4445555555555 555555555555555444
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.8e-15 Score=133.39 Aligned_cols=225 Identities=12% Similarity=0.031 Sum_probs=155.2
Q ss_pred cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----ccch
Q 006396 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP--S----IVTF 381 (647)
Q Consensus 308 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 381 (647)
...+..+...+...|++++|...++...... .+...+..+..++...|++++|...+++..+..+.. + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456778888999999999999999999887 778899999999999999999999999998753321 1 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ 461 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (647)
..+..++...|++++|...++.+... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999875 4553 34566677888888888877652 22334455556666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHH
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++++.. +.+...+..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666665543 3344455555555555555555555555555421 123444445555555555555555555
Q ss_pred HHHHH
Q 006396 542 VSLQE 546 (647)
Q Consensus 542 ~~~~~ 546 (647)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=2.2e-14 Score=131.93 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEP--SAVTYTTFMNA 422 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 422 (647)
.+......+...|++++|+..+++.++..+. +...+..+..++...|++++|...++.+...+..+ ....+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445667788889999999999998886433 56678888889999999999999999888743122 24457888899
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKA 502 (647)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 502 (647)
+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764 3456788899999999999999999999988763 55677777777344445699999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 006396 503 FQLLNQMWLHNLEP-TSATYNILIDGLCVNGD---LKNADCLLVSLQEHN-ISLT------KVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 503 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 571 (647)
...++++.+. .| +...+..++.++...|+ +++|...++++.+.. -.|+ ..++..++..+...|++++
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999983 44 47888888999988888 888999999998631 1133 2477889999999999999
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGG 622 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (647)
|+..++++++.. |.+..++..+.......|
T Consensus 240 A~~~~~~al~~~---------------------p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALD---------------------PTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHC---------------------TTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcC---------------------ccHHHHHHHhhhhhcccc
Confidence 999999999987 777888887776665554
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=2.9e-14 Score=129.40 Aligned_cols=203 Identities=10% Similarity=-0.016 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRS 492 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (647)
...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455666667777777777777777776653 3456667777777777788888888887777653 4466677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
+...|++++|..+++++...+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877632334 46677777788888888888888888887753 3456677778888888888888
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|...++++++.. |.+...+..++..+...|++++|.+.++++.+.++
T Consensus 194 A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGG---------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTS---------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC---------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 888888887765 66677777888888888888888888888877553
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=2.6e-14 Score=131.44 Aligned_cols=246 Identities=14% Similarity=0.034 Sum_probs=197.2
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT--HVTYTVV 454 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 454 (647)
+...+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++...+....|+ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34456677888999999999999999998864 34555788888999999999999999999988432222 3458889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDL 534 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 534 (647)
...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++++.. +.+...+..++..+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5567889999999999999999999999998842 33588888888444455699
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCc-ccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFE-ISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
++|...++++.+.. +.+...+..++.++...|+ +++|+..++++++..-. |+.. . .....+
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~------------~~~~~~ 223 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY--K------------DELIEA 223 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG--H------------HHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc--h------------HHHHHH
Confidence 99999999999863 4456788889999999998 88999999999874300 0000 0 001368
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 611 CEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+..++..|.+.|++++|.+.++++++.+|.
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 889999999999999999999999997653
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=7e-14 Score=124.36 Aligned_cols=204 Identities=9% Similarity=0.014 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (647)
+...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566677777777888888888887777653 3456677777777788888888888888877753 456677777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 492 SFCKC-KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 492 ~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
.+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887732233 36677778888888888888888888887753 34566778888888888888
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP-PDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++|...++++++.. | .+...+..++..+...|+.++|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRV---------------------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHH---------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhC---------------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 88888888887765 5 6677777777788888888888888888776543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=1.1e-14 Score=131.35 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=97.2
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG 457 (647)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (647)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444455555555666666666666555432 3345555555555555666666666665555442 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555543 3344455555555555555555555555555421 22345555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...++++.+.. +.+..++..++.++...|++++|...++++++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 55555555532 2334455555555555555555555555555544
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=5.4e-13 Score=122.49 Aligned_cols=224 Identities=11% Similarity=-0.016 Sum_probs=190.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
++..+..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777888888889999999999988873 245677778888888 899999999999988764 677888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 418 TFMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK----QWKLQEAVQLLEDMYVIGVTPDQITYNTI 489 (647)
Q Consensus 418 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (647)
.+...|.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 999999999999988864 67788888888888 899999999999999865 56677788
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 490 IRSFCK----CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 490 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
...|.. .+++++|...+++..+.+ ++..+..+..+|.. .+++++|...++++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999998853 56778888999999 999999999999999864 3667888889
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 006396 562 AHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
.+.. .+++++|+.+++++.+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 999999999999999887
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=5.5e-12 Score=128.13 Aligned_cols=443 Identities=13% Similarity=0.048 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC---hHHHHHH
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN---VEEGLKL 225 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 225 (647)
..+....|+..+..+ +.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+....+.++ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344555556665553 579999999999999999999999999999887 33356678888888888888 9999999
Q ss_pred HHHHHhCCC-CcCcccHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHHc--------
Q 006396 226 REVMLSQGF-KLNVIAYSVLLSSMCKSGRI--------DEALGLLYEMEA-VGL-KPD-LVTYSILIRGLCK-------- 285 (647)
Q Consensus 226 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~-------- 285 (647)
|+..+.... .|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999998741 36777888888776665553 334577776554 465 554 4577777765432
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 006396 286 -QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKE---MITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGE 361 (647)
Q Consensus 286 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (647)
.++++.+..+|+.++.. |... +..+...|..-. +...+.+++.. ...+++.
T Consensus 206 eq~~~~~~R~iy~raL~i---P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e---------------------~~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ---PMDC-LESMWQRYTQWEQDVNQLTARRHIGE---------------------LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS---CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHH---------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC---ccHH-HHHHHHHHHHHHHhcCcchHHHHHHH---------------------hhHHHHH
Confidence 33467788888888752 3221 111211111100 00001111111 0112333
Q ss_pred HHHHHHHHHHC--CC----C-----------C--C------ccchHHHHHHHHhcC-------CHHHHHHHHHHHHHCCC
Q 006396 362 AVQLYRQLIEK--RI----S-----------P--S------IVTFNSLIYGFCKNG-------KVADARRLLDTIKLHGL 409 (647)
Q Consensus 362 a~~~~~~~~~~--~~----~-----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 409 (647)
|...+..+... ++ + | + ...|...+..-...+ ..+.+..+|++.... +
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 44444332210 11 1 1 0 012333333222222 123455678877765 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLL-ALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV--------- 479 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------- 479 (647)
+-....|...+..+...|+.++|. .+|+..... .+.+...|...+....+.|++++|.++|+++++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 557888888888888899998996 999998864 345666677788888889999999999999886410
Q ss_pred CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CChhhHHHHHHHHHH
Q 006396 480 TPD------------QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN-GDLKNADCLLVSLQE 546 (647)
Q Consensus 480 ~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 546 (647)
.|+ ..+|...+....+.|+.+.|..+|.++.+....+....|...+..-.+. ++++.|.++|+..++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 132 2467888888888999999999999998841112334444433333344 459999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC---CCHHHHHHHHHHHHcCCC
Q 006396 547 HNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP---PDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 623 (647)
. .+.+...|...+......|+.+.|..+|++++... + .....|..++..-.+.|+
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~---------------------~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI---------------------SDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS---------------------SSTTHHHHHHHHHHHHHHHTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHHHcCC
Confidence 6 45566777888888888999999999999999865 3 136788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 006396 624 LGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 624 ~~~A~~~~~~~~~~~~~~~ 642 (647)
.+.+..+.+++.+..|..+
T Consensus 557 ~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 9999999999998776543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.2e-14 Score=129.41 Aligned_cols=214 Identities=9% Similarity=0.017 Sum_probs=165.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006396 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 420 (647)
.....+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++.+.... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3456677788889999999999999999988643 367788889999999999999999999988764 45788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLR 500 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 500 (647)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998764 4577888899999999999999999999999864 567888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
+|...++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+..++..+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 234 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHH
Confidence 9999999998842 3458899999999999999999999999999853 33445555443
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=3.2e-12 Score=129.84 Aligned_cols=456 Identities=10% Similarity=0.014 Sum_probs=256.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCC---hhhHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGF---AEVAKG 119 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~a~~ 119 (647)
..++-...|+..+..++ .|...|..++..+.+.+.++.++.+|++++.. ++.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34555666777776565 78888888888888888888888888888775 34466778888888888888 888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-ChhhHHHHHHHHHh-------
Q 006396 120 LFCLMLKYG-LHPDAFSYNILIHGLCIAGSM--------EEALEFTNDMGR-HGV-EP-DAITYSILAKGFHL------- 180 (647)
Q Consensus 120 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~------- 180 (647)
+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888888763 127777777777665554443 334467776554 344 33 34567776665432
Q ss_pred --cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHH
Q 006396 181 --LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL 258 (647)
Q Consensus 181 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 258 (647)
.++.+.+.++|++.+......-..+|..........+. ..+.+++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 33466777888887742111011122211111100000 0011111100 01111222
Q ss_pred HHHHHHHHC--CC----C-----------C-----C---HhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCC
Q 006396 259 GLLYEMEAV--GL----K-----------P-----D---LVTYSILIRGLCKQD-------KVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 259 ~~~~~~~~~--~~----~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~ 306 (647)
..+.++... ++ + | + ...|...+..--..+ ..+.+..+|++++.. ++.
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 222221100 00 0 0 0 112333332222211 123345566666654 234
Q ss_pred CcccHHHHHHHHhhcCCHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC
Q 006396 307 NSFAHGAILLGLCEKEMITEAR-MYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI---------SP 376 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 376 (647)
....+...+..+...|+.++|. .+++..... ++.+...+-..+...-+.|+++.|.++|+++++... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 5555666666666666666775 777777653 344555666666677777777777777777665310 12
Q ss_pred C------------ccchHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 006396 377 S------------IVTFNSLIYGFCKNGKVADARRLLDTIKLH-GLEPSAVTYTTFMNAYCEE-GNIQRLLALLQEMETK 442 (647)
Q Consensus 377 ~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 442 (647)
+ ...|...+....+.++.+.|..+|....+. + ......|...+..-.+. ++++.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235666666666777788888888877765 2 12223333333222333 4478888888877765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006396 443 AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSAT 520 (647)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 520 (647)
.+.+...|...+......|+.+.|..+|++.+....++ ....|...+..-...|+.+.+..+.+++.+. .|+...
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~ 576 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNK 576 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCH
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcH
Confidence 23355556666776677788888888888877653211 2356777777777788888888888888773 344333
Q ss_pred HHHHHHHH
Q 006396 521 YNILIDGL 528 (647)
Q Consensus 521 ~~~l~~~~ 528 (647)
...+++-|
T Consensus 577 ~~~f~~ry 584 (679)
T 4e6h_A 577 LEEFTNKY 584 (679)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 33334444
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=4.8e-14 Score=134.10 Aligned_cols=250 Identities=11% Similarity=0.018 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGK-VADARRLLDTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 420 (647)
+...+..+..++...|++++|+..+++++...+. +...|..+..++...|+ +++|+..+++++... +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3556777888889999999999999999987544 67788889999999996 999999999998864 55788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCH
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK-CKDL 499 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 499 (647)
.++...|++++|+..|+.+.+.. +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999874 4577889999999999999999999999999975 5678899999999998 5665
Q ss_pred HHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 006396 500 RKA-----FQLLNQMWLHNLEP-TSATYNILIDGLCVNG--DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG---- 567 (647)
Q Consensus 500 ~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 567 (647)
++| +..+++++. +.| +...|..+..++...| ++++|.+.+.++ +. -+.+...+..++.++.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 588999988 455 5889999999999988 689999999988 43 3445668899999998874
Q ss_pred -----CHHHHHHHHHHH-HHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc
Q 006396 568 -----DVHKAMTFFCQM-VEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ 620 (647)
Q Consensus 568 -----~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (647)
..++|+.+++++ .+.+ |.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D---------------------P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD---------------------TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC---------------------GGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHH
Confidence 358999999999 7766 5667788777766654
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=3.1e-14 Score=135.38 Aligned_cols=233 Identities=6% Similarity=0.022 Sum_probs=200.8
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 379 VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN-IQRLLALLQEMETKAIGPTHVTYTVVIKG 457 (647)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (647)
..+..+...+...|++++|...+++++... +-+...|+.+..++...|+ +++|+..|+++.... +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456777888889999999999999998864 5568889999999999996 999999999999874 4577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhh-cCChh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCV-NGDLK 535 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 535 (647)
+...|++++|+..++++++.. +.+...|..+..++...|++++|+..++++++ +.| +...|+.++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999975 66888999999999999999999999999999 445 68999999999999 66658
Q ss_pred hH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 536 NA-----DCLLVSLQEHNISLTKVAYTTIIKAHCAEG--DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 536 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
+| +..++++++.. +-+...|..+..++...| ++++|++.++++ +.. +.+.
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~---------------------p~~~ 309 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS---------------------HSSP 309 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT---------------------CCCH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC---------------------CCCH
Confidence 88 58899999853 446679999999999988 689999999888 544 7778
Q ss_pred HHHHHHHHHHHcCC--------C-HHHHHHHHHHH-HhCCC
Q 006396 609 EICEVMLIAFHQGG--------D-LGSVFELAAVM-IKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~ 639 (647)
.++..++.+|.+.| + +++|+++++++ .+.++
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999874 3 58999999998 77553
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=3.6e-15 Score=137.46 Aligned_cols=247 Identities=10% Similarity=-0.110 Sum_probs=175.7
Q ss_pred hcCChhHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhh
Q 006396 40 NLRHTDIMWDLYDDIKVSET---PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 116 (647)
..++++.|...|++++...+ +.++.++..++..+...|++++|+..|+++....+ .+..++..++..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 45677888888888876432 23456778888888888888888888888877643 357788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
|...|+++++.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888764 446778888888888888888888888888774 34444444455555667888888888877776
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006396 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL---NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL 273 (647)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 273 (647)
.. |+......++..+...++.++|.+.++......... +...+..+..++...|++++|...|++.... .|+.
T Consensus 173 ~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 52 222333346677777888888888888876653211 1467788888888899999999999888875 3432
Q ss_pred hhHHHHHHHHHccCCHHHHHHHH
Q 006396 274 VTYSILIRGLCKQDKVHKAIQLY 296 (647)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~ 296 (647)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233345666778888877765
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=8.1e-15 Score=135.08 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=162.3
Q ss_pred HHhcCChhHHHHHHHHhhcCCC---CcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 73 LCQQSRLQDAILFLQETAGKEF---GPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (647)
+...|++++|+..|+++..... +.+..++..++..+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445777888888887776532 1234567777777888888888888888877764 44567777777778888888
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++... .|+.......+..+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888777752 345677777777888888888888888887765 344444444444556667888888888766
Q ss_pred HhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006396 230 LSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKP---DLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 306 (647)
.... +++.. ...++..+...++.++|...+++........ +...+..+...+...|++++|...|+++... .|
T Consensus 171 ~~~~-~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 171 FEKS-DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHHS-CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HhcC-CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 6653 22333 3346666677777777777777765432110 1456777777777888888888888887765 23
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYF 331 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~ 331 (647)
+. +......+...+++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 223344555666777666554
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=1.3e-13 Score=118.08 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILID 526 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 526 (647)
+...|..+...+...|++++|+..|++.++.. |.+..++..+..+|...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56778888888888888888888888888864 5567788888888888899999999888888732 335777788888
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC
Q 006396 527 GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP 606 (647)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (647)
.+...++++.|...+.++.+.. +.+...+..++.++...|++++|+..|+++++.. |.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------------p~ 139 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------------PG 139 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------------ch
Confidence 8888899999999998888753 4566788888889999999999999999998877 77
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 607 DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+..+|..++.+|.+.|++++|.+.++++++.+|
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 788899999999999999999999999888654
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=3.3e-13 Score=122.31 Aligned_cols=199 Identities=13% Similarity=-0.002 Sum_probs=120.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 381 FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (647)
+..+...+...|++++|...++.+.... +.+...+..+...|...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 2344555555555666666666666666655442 2345555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665522222 34456666666777777777777777766632 2246666777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 540 LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++++.+.. +.+...+..++..+...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 777776642 3445566667777777777777777777777665
No 57
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=154.43 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=121.8
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKL---HGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTV 453 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (647)
-..+|+.+|.+|++.|++++|.++|..|.+ .|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345799999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 006396 454 VIKGLCKQWK-LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT------SATYNILID 526 (647)
Q Consensus 454 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~ 526 (647)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. ..++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 578899999999999999999999888765553 344444444 2234443 444556667
Q ss_pred HHhhcCC
Q 006396 527 GLCVNGD 533 (647)
Q Consensus 527 ~~~~~g~ 533 (647)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7776653
No 58
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=154.19 Aligned_cols=152 Identities=12% Similarity=0.136 Sum_probs=125.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE---KRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
.-..+|+++|.+|++.|++++|.++|..|.+ .|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 006396 418 TFMNAYCEEGNI-QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD------QITYNTII 490 (647)
Q Consensus 418 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~ 490 (647)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999984 78999999999999999999999998765543 344444444 2234443 23334455
Q ss_pred HHHHhcC
Q 006396 491 RSFCKCK 497 (647)
Q Consensus 491 ~~~~~~~ 497 (647)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555543
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=8.6e-13 Score=117.24 Aligned_cols=200 Identities=12% Similarity=0.028 Sum_probs=120.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
.+..+...+...|++++|...++.+.... +.+...+..+...|...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444555555555555555544432 2334455555555666666666666666655542 234555666666666
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 460 KQ-WKLQEAVQLLEDMYVIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 460 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
.. |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 66777776666666522222 24556666667777777777777777776631 22466677777777777777777
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNIS-LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...++++.+.. + .+...+..+...+...|+.++|..+++.+.+..
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 167 DYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 77777777643 3 455566666666677777777777777776654
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=4e-14 Score=138.99 Aligned_cols=277 Identities=9% Similarity=0.025 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSI----VTFNSLIYGFCKNGKVADARRLLDTIKLH----G-LEPSAVT 415 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 415 (647)
.+..+...+...|++++|+..|+++++..+. +. ..+..+...+...|++++|...+++.... + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677777788888777777765322 22 35666677777778888887777766542 1 1223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETK----A-IGPTHVTYTVVIKGLCKQWK-----------------LQEAVQLLED 473 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 473 (647)
+..+...|...|++++|...+++.... + .+....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777788888888888888776543 1 11123466777777888888 8888888877
Q ss_pred HHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCChhhHHHHHHH
Q 006396 474 MYVI----GV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EPT----SATYNILIDGLCVNGDLKNADCLLVS 543 (647)
Q Consensus 474 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (647)
..+. +. +....++..+...|...|++++|...+++..+... .++ ...+..++.+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 11234677788888899999999999988876210 011 34778888999999999999999988
Q ss_pred HHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 544 LQEHNI--S---LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 544 ~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
+.+... . ....++..++.++...|++++|..+++++++..-... ..+....++..++.+|
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG---------------DRIGEARACWSLGNAH 353 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHHHH
Confidence 875310 0 1145778888999999999999999999886430000 0012256788899999
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 006396 619 HQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~ 637 (647)
.+.|++++|.+.++++++.
T Consensus 354 ~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=3.3e-13 Score=132.23 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GLEP-SA 413 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 413 (647)
...+......+...|++++|...|++..+..+. + ..++..+...+...|++++|...+++.... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344445555666666666666666666654322 2 134555566666666666666666654321 1111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GPT----HVTYTVVIKGLCKQWK--------------------LQEAV 468 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~ 468 (647)
..+..+...|...|++++|...++...+... .++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4555666667777777777777766544210 011 3356666677777777 77777
Q ss_pred HHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhcCChhhHH
Q 006396 469 QLLEDMYVI----GVT-PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT----SATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 469 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~ 538 (647)
..+++..+. +.. ....++..+...|...|++++|...+++..+.. -.++ ..++..++.+|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777766542 111 113456777778888888888888888877520 0111 346777888888888888888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHH
Q 006396 539 CLLVSLQEH----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICE 612 (647)
Q Consensus 539 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 612 (647)
..++++.+. +..+. ..++..++..+...|++++|...++++++..-. .+. +....++.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~ 311 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----------------LNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----------------cCCcHHHHHHHH
Confidence 888887752 11111 346777888888888888888888888764200 000 11256777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 613 VMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.++.+|...|++++|.+.++++++
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888764
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=1.2e-12 Score=122.24 Aligned_cols=218 Identities=12% Similarity=-0.026 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-------cCCh-------hHHHHHHHHhhc-CCCCcCHHhHHHHHHHHH
Q 006396 45 DIMWDLYDDIKVSETPRNVYTNSIVIDGLCQ-------QSRL-------QDAILFLQETAG-KEFGPSVVSLNAIMSRYC 109 (647)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 109 (647)
+.|...|++++...| .++..|..++..+.. .|++ ++|+.+|++++. ..+ .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 678889999887554 788889888887763 4776 889999999887 333 35668888888888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhhH
Q 006396 110 KLGFAEVAKGLFCLMLKYGLHPDAF-SYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH-LLSQISGA 187 (647)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 187 (647)
+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999988763 22343 78888888888888888888888887753 334444443333322 25777777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCc--CcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG-FKL--NVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
.++|++.++..+. +...|..++..+.+.|++++|..+|+...... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777665221 45566666667777777777777777777652 232 3345666666666677777777777766
Q ss_pred HHC
Q 006396 265 EAV 267 (647)
Q Consensus 265 ~~~ 267 (647)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=9.4e-12 Score=116.12 Aligned_cols=219 Identities=10% Similarity=0.041 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHCCCCCCccchHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFC-------KNGKV-------ADARRLLDTIKLHGLEPSAVTYTTFMNAYCE 425 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (647)
++|..+|++.+... +.++..|..++..+. ..|++ ++|..+|++....-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887753 236667777666664 34775 8899999998873124456788888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006396 426 EGNIQRLLALLQEMETKAIGPT-HV-TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC-KCKDLRKA 502 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 502 (647)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998875 443 33 78888888888999999999999998864 445555554444322 36999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 503 FQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN-ISL--TKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..+|+++++.. +.+...|..++..+...|++++|..+|+++++.. ++| ....|..++......|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998832 2358888999999999999999999999999852 354 3558888888888999999999999999
Q ss_pred HHcC
Q 006396 580 VEKG 583 (647)
Q Consensus 580 ~~~~ 583 (647)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8865
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=8.8e-14 Score=136.34 Aligned_cols=264 Identities=13% Similarity=0.022 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEK----RIS-PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG----L-EPSAV 414 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~ 414 (647)
++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...+++..... . .....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444555555555555555555554332 101 112344455555666666666666665544310 0 00133
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006396 415 TYTTFMNAYCEEGN--------------------IQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 415 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
.+..+...|...|+ +++|...++..... +..| ...++..+...+...|++++|..
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 55666666777777 77777777665431 1111 23467777888888999999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChhhHHH
Q 006396 470 LLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 470 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.+++..+... .++ ..++..+...|...|++++|...+++.... +..+ ...++..++.+|...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9888775310 112 236778888999999999999999988752 1111 15678889999999999999999
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHHH
Q 006396 540 LLVSLQEH----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICEV 613 (647)
Q Consensus 540 ~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 613 (647)
.++++.+. +..+. ..++..++.++...|++++|...++++++..- ..+. +....++..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR----------------EVGDKSGELTARLN 352 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------HhcCCcchhHHHHH
Confidence 99998863 11111 44778899999999999999999999886420 0011 223567777
Q ss_pred HHHHHHcCCCH
Q 006396 614 MLIAFHQGGDL 624 (647)
Q Consensus 614 l~~~~~~~g~~ 624 (647)
++.++...|+.
T Consensus 353 l~~~~~~~g~~ 363 (406)
T 3sf4_A 353 LSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhHh
Confidence 88888877765
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=3.3e-13 Score=128.43 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=190.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 006396 346 YNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GL-EPSAVTY 416 (647)
Q Consensus 346 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 416 (647)
+......+...|++++|...++++.+..+. + ...+..+...+...|++++|...++..... +. +.....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455666777777777777777665322 2 245556666777777777777777665431 11 1124456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAI-GPT----HVTYTVVIKGLCKQWK--------------------LQEAVQLL 471 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 471 (647)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6777777888888888888777654210 112 2366677777778888 88888888
Q ss_pred HHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChhhHHHHH
Q 006396 472 EDMYVI----GV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 472 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
++..+. +. +....++..+...+...|++++|...+++..+. +..+ ...++..++.++...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 11 112346778888899999999999999988752 1111 1347888899999999999999999
Q ss_pred HHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 542 VSLQEHNI-SLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 542 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
+++.+... .++ ..++..++.++...|++++|...++++++..-... ..+....++..++.
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK---------------DRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC---------------CcHHHHHHHHHHHH
Confidence 99875310 011 44778889999999999999999999986430000 00112567889999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCC
Q 006396 617 AFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+|.+.|++++|.+.++++++..
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHcCChHHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.54 E-value=3.4e-13 Score=133.77 Aligned_cols=210 Identities=9% Similarity=-0.017 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI-QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
++++...++...... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666555432 44677777788888888888 88888888877653 3456778888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc--------CCh
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKC---------KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVN--------GDL 534 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~ 534 (647)
++.+. .|+...+..+..++... |++++|...++++++. .| +...|..++.+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88875 46667788888888888 8888888888888873 44 578888888888888 888
Q ss_pred hhHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 535 KNADCLLVSLQEHNIS---LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
++|...|+++.+.. + .+...|..++.++...|++++|+..|+++++.. |.+..++
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------p~~~~a~ 295 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---------------------PAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHH
Confidence 89999988888753 3 367788888888888999999999999888877 6778888
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 006396 612 EVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~ 631 (647)
..++.++...|++++|.+.+
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888887644
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=3.6e-13 Score=132.17 Aligned_cols=239 Identities=13% Similarity=0.067 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEK----R-ISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH----G-LEPSAV 414 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 414 (647)
.+..+...|...|++++|...+++.++. + .+....++..+...+...|++++|...+++.... + .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444455555555555555555554432 0 0112234455555566666666666666554432 0 011234
Q ss_pred HHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 415 TYTTFMNAYCEEGN-----------------IQRLLALLQEMETK----AIG-PTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 415 ~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
.+..+...|...|+ +++|...+++..+. +.. .....+..+...+...|++++|...++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56666677777777 77777777665432 111 123467777888888999999999998
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHhhcCChhhHHHHHH
Q 006396 473 DMYVIGVT-PD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLHN--LE---PTSATYNILIDGLCVNGDLKNADCLLV 542 (647)
Q Consensus 473 ~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (647)
+..+.... .+ ..++..+...|...|++++|...++++.... .. ....++..++.+|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88763211 12 2367888889999999999999999887621 11 125678889999999999999999999
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 543 SLQEH----NISL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 543 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++.+. +..+ ...++..++.++...|++++|..+++++++..
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 98863 1111 13478889999999999999999999998865
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=5.8e-12 Score=107.65 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTII 490 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 490 (647)
.+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356778888889999999999999999888764 4467788888888999999999999999888764 55677777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
..+...++++.|...+.+..... +.+...+..++.+|...|++++|++.|+++.+.+ +.+..+|..++.++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88889999999999999988732 3358888899999999999999999999999863 456778999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 006396 571 KAMTFFCQMVEKG 583 (647)
Q Consensus 571 ~A~~~~~~~~~~~ 583 (647)
+|+..|+++++..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998865
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=3.2e-12 Score=123.77 Aligned_cols=231 Identities=7% Similarity=-0.009 Sum_probs=167.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC----CCCHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLH----GLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMETK--AI----GPTHVTYT 452 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 452 (647)
....+...|++++|...+++.... +-.+ ....+..+...|...|+++.|...+++..+. .. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445666788888888888877653 1111 2456777888888888888888888876642 11 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHH
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYN 522 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~ 522 (647)
.+...|...|++++|...+++..+... .++ ..++..+..+|...|++++|...+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888899999999999988876311 111 246788889999999999999999998871 2223 477888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCcccchhhhhHH
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEH----NISLTKVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFEISIRDYTKSF 595 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 595 (647)
.++.+|...|++++|...++++.+. +-+.....+..+...+...|+ +++|+.++++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-------------- 334 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-------------- 334 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--------------
Confidence 9999999999999999999998863 111112245667888888898 7777777766511
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 596 FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+.....+..++..|...|++++|.+.++++++
T Consensus 335 --------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 --------YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123356788899999999999999999999875
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=2.4e-12 Score=127.59 Aligned_cols=213 Identities=7% Similarity=-0.053 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006396 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV-ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437 (647)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (647)
++.+...++...... +.+...+..+...+...|++ ++|...|++..+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655442 23667777888888888898 99999998887753 4457888889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006396 438 EMETKAIGPTHVTYTVVIKGLCKQ---------WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC--------KDLR 500 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 500 (647)
...+. .|+...+..+...+... |++++|+..++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98876 46778888888888888 99999999999999874 56788889999999888 9999
Q ss_pred HHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEP----TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
+|...|+++++. .| +...|..++.+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999983 45 68899999999999999999999999999853 445668889999999999999998766
Q ss_pred HHH
Q 006396 577 CQM 579 (647)
Q Consensus 577 ~~~ 579 (647)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=2.8e-12 Score=131.97 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILI 525 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 525 (647)
+...++.+...+.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..|+++++ +.| +...|..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34578888888888899999999888888864 45677888888889999999999999998888 455 478888899
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (647)
.+|...|++++|++.|+++++.+ +.+..++..++.++...|++++|+..|+++++.. |
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---------------------P 142 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---------------------P 142 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------S
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------C
Confidence 99999999999999999988853 3456688889999999999999999999998887 7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 606 PDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 606 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+..++..++.+|...|++++|.+.++++++
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7788999999999999999999888888765
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.7e-12 Score=123.52 Aligned_cols=239 Identities=14% Similarity=0.061 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEK----RI-SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGL-EPS----AV 414 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 414 (647)
.+..+...+...|++++|...+++..+. +. +....++..+...+...|++++|...+++...... .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555554332 00 11123445555566666666666666655443100 011 23
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 415 TYTTFMNAYCEEGN--------------------IQRLLALLQEMETK----AI-GPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 415 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
++..+...|...|+ +++|...++..... +. ......+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566666667777 77777777665431 11 1123456777788888899999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChhhHHH
Q 006396 470 LLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 470 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.+++..+... .++ ..++..+...+...|++++|...+++.... +..+ ...++..++.+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888775310 111 236778888899999999999999988752 1111 15677888999999999999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 540 LLVSLQEH----NISL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 540 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++++.+. +.++ ...++..++.++...|++++|...++++++..
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99998753 1111 13377889999999999999999999998754
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=3.7e-12 Score=109.17 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGL 528 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (647)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566667777788888888877776543 4456677777888888888888888888887732 33577788888888
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
...|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++++.. |.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~ 144 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---------------------PNEG 144 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---------------------ccch
Confidence 88888888888888888753 4566778888888888888888888888888876 6678
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.++..++.++...|++++|.+.++++.+..+.
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 88888888888889999998888888775543
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=6.1e-12 Score=121.82 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=174.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CccchHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLIEK----RISP-SIVTFNSLIYGFCKNGKVADARRLLDTIKLHG--L----EPSAVTYT 417 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 417 (647)
....+...|++++|...+++..+. +..+ ...++..+...+...|+++.|...+.+..... . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999988764 1111 23567778888999999999999998876521 1 11245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAI-GPT----HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI----GV-TPDQITYN 487 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 487 (647)
.+...|...|++++|...|+...+... .++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999988764310 111 246788889999999999999999998872 22 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCC-CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC-HHHHHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHN---LEP-TSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT-KVAYTTI 559 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 559 (647)
.+..+|...|++++|...+++..+.. -.| ....+..+...|...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999988621 012 23346778889999999 77777777765 23333 3477889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+..|...|++++|..+++++++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.5e-12 Score=122.29 Aligned_cols=240 Identities=12% Similarity=0.066 Sum_probs=148.7
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC
Q 006396 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLH-------GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK------AI 444 (647)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 444 (647)
..++..+...+...|++++|..+++.+... ..+.....+..+...|...|++++|...++..... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777777888888888888777652 12334556677777777888888888888776653 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 006396 445 -GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI------GV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH---- 512 (647)
Q Consensus 445 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 512 (647)
+.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|..+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223445667777777778888888877777653 11 122345666777777778888888877777652
Q ss_pred --CCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 006396 513 --NLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH-------NISLTK-------VAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 513 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
+..| ...++..++.+|...|++++|...++++.+. ...+.. ..+......+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1123 2456677777777778888887777777752 111111 1222223333444555555556
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
++.+.... +....++..++.+|.+.|++++|.+.++++++..
T Consensus 267 ~~~~~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 267 YKACKVDS---------------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -------C---------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhcCCCC---------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 66555443 4557889999999999999999999999998753
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1e-11 Score=110.38 Aligned_cols=168 Identities=8% Similarity=-0.041 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDG 527 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 527 (647)
..+......+...|++++|+..|++.++...+++...+..+..++...|++++|...+++.++ ..| +...+..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 444444444555555555555555555443214444444455555555555555555555554 223 24445555555
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTK-------VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
|...|++++|...++++.+.. +.+. .+|..++..+...|++++|+..++++++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------- 147 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT----------------- 147 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-----------------
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-----------------
Confidence 555555555555555555431 2222 234445555555555555555555555543
Q ss_pred hCCCCC--CHHHHHHHHHHHHcCCC---------------------------HHHHHHHHHHHHhCCCC
Q 006396 601 SNGFPP--DQEICEVMLIAFHQGGD---------------------------LGSVFELAAVMIKSGLL 640 (647)
Q Consensus 601 ~~~~~~--~~~~~~~l~~~~~~~g~---------------------------~~~A~~~~~~~~~~~~~ 640 (647)
|. +..++..++.+|...|+ +++|+..++++++.+|.
T Consensus 148 ----p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 148 ----SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 33 33444444444444444 49999999999987653
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.6e-12 Score=120.60 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=160.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-------RISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH------G 408 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 408 (647)
...++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4556677777788888888888888777663 22224456677777888888888888888777653 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006396 409 -LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK------AIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVI--- 477 (647)
Q Consensus 409 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 477 (647)
.+.....+..+...|...|++++|...++...+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223566777888888889999888888887653 2122 3446777888888999999999999888764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHhhcCChhhHHH
Q 006396 478 ---GVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH-------NLEPT-------SATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 478 ---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
+..| ...++..+..+|...|++++|..+++++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456788888999999999999999988752 11111 2223333444555677888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 540 LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.+....... +....++..++.+|...|++++|..+++++++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888887632 334568899999999999999999999999874
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=2.5e-10 Score=110.12 Aligned_cols=270 Identities=14% Similarity=0.039 Sum_probs=135.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcc----chHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 006396 351 DGYVKLGNIGEAVQLYRQLIEKRISPSIV----TFNSLIYGFCKNGKVADARRLLDTIKLHGL-EPS----AVTYTTFMN 421 (647)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 421 (647)
..+...|+++.|...+++........+.. ++..+...+...|++++|...+++...... ..+ ...+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655543211111 233444555556666666666655443100 011 122344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 006396 422 AYCEEGNIQRLLALLQEMETK----AIG--P-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP----DQITYNTII 490 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 490 (647)
.+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566666666666666655432 111 2 12334445556666667777766666665532111 123455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEP-T-SATYN----ILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTIIK 561 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 561 (647)
..+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++..+....+. ...+..++.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 66666677777776666665410011 1 11111 222335566777777776666654221111 123455566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
++...|++++|...++++.... ...+.+++ ...+..++.++...|+.++|.+.++++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENA----------------RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHH----------------HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666677777777766665432 00011112 23555566666666777777666666543
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=5.3e-11 Score=105.69 Aligned_cols=209 Identities=13% Similarity=-0.026 Sum_probs=152.2
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK 456 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 456 (647)
++..+......+...|++++|...|+.......+++...+..+..++...|++++|+..|+...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5567777888888889999999999888876533677777778888888999999999998888763 334567788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 006396 457 GLCKQWKLQEAVQLLEDMYVIGVTPDQ-------ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT---SATYNILID 526 (647)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 526 (647)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++++ ..|+ ...+..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 8888899999999998888763 4444 4577777788888899999999988887 3454 567777777
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC
Q 006396 527 GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP 606 (647)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (647)
+|...| ...++++...+ ..+...+.... ....+.+++|+..++++++.. |.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~---------------------p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS---------------------PN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC---------------------TT
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---------------------CC
Confidence 776544 34455555432 23333443332 344567899999999999987 66
Q ss_pred CHHHHHHHHHHH
Q 006396 607 DQEICEVMLIAF 618 (647)
Q Consensus 607 ~~~~~~~l~~~~ 618 (647)
+..+...+....
T Consensus 213 ~~~~~~~l~~i~ 224 (228)
T 4i17_A 213 RTEIKQMQDQVK 224 (228)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677766665543
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=4.4e-10 Score=108.32 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=147.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CH
Q 006396 346 YNIMIDGYVKLGNIGEAVQLYRQLIEKRISP-S----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GLE--P-SA 413 (647)
Q Consensus 346 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 413 (647)
+..+...+...|+++.|...+++........ + ..++..+...+...|++++|...+++.... +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3444555666667776666666655421110 1 112344556666777777777777765541 211 2 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH-
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAIG----PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD-QITYN- 487 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~- 487 (647)
..+..+...+...|++++|...+++....... .....+..+...+...|++++|...+++.......++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 44555667777788888888888776543211 1234566777778888888888888888765321111 11111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCCH-HH
Q 006396 488 ----TIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLTK-VA 555 (647)
Q Consensus 488 ----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~ 555 (647)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...++++.+. |.+++. .+
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 23344668889999988888877632111 1335667788888889999999988887642 211222 25
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+..+..++...|++++|...+++++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666778888899999999999988764
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.3e-10 Score=112.09 Aligned_cols=232 Identities=10% Similarity=0.019 Sum_probs=172.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C-CCHHHH
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRIS-P----SIVTFNSLIYGFCKNGKVADARRLLDTIKLH----GL-E-PSAVTY 416 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~ 416 (647)
.....+...|++++|...+++..+.... + ...++..+..+|...|+++.|...+.+.... +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3455677889999999999988764211 1 2346677888889999999999998887652 10 1 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVI----GVTPDQITYN 487 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 487 (647)
+.+...|...|++++|...|+...+. +..+ ...++..+..++...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78888999999999999999887652 1111 2346778888899999999999999998871 2233467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CC--CC-CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC-HHHHHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLH-NL--EP-TSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT-KVAYTTI 559 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 559 (647)
.+..++.+.|++++|..++++..+. .- .| ....+..+...|...|+ +++|...+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8999999999999999999999872 11 22 24556777778888888 77777777662 22333 3467789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+..|...|++++|...++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.5e-11 Score=126.66 Aligned_cols=168 Identities=13% Similarity=-0.024 Sum_probs=139.4
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 60 PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
|.++.+++.++.++.++|++++|+..|+++++..+. +..++..++.+|.+.|++++|+..|+++++.. +.+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456778899999999999999999999999886543 57788899999999999999999999998874 5567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
..++...|++++|.+.|++..+.. +-+...|+.+..++...|++++|++.|++.++.... +...+..+...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999888763 446788888899999999999999999988876322 466788888888889998
Q ss_pred HHHHHHHHHHHh
Q 006396 220 EEGLKLREVMLS 231 (647)
Q Consensus 220 ~~a~~~~~~~~~ 231 (647)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877755
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-10 Score=112.59 Aligned_cols=230 Identities=11% Similarity=0.001 Sum_probs=174.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CC-CHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGL-EP----SAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AI-GP-THVTYT 452 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 452 (647)
....+...|++++|...+++...... .+ ....+..+...|...|+++.|...++...+. +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44566789999999999999876311 12 2456788889999999999999999887652 11 11 245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVI----GVT-PDQITYNTIIRSFCKCKDLRKAFQLLNQMWL-----HNLEPTSATYN 522 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 522 (647)
.+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8889999999999999999988763 111 1234678889999999999999999999887 32 22377888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCcccchhhhhHH
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNI---SLT-KVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFEISIRDYTKSF 595 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 595 (647)
.++.+|.+.|++++|...+++..+... .+. ...+..+...+...|+ +++|+.++++. +
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~------------ 330 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N------------ 330 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C------------
Confidence 999999999999999999999987421 122 2355666667777888 77777777762 2
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 596 FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+.....+..++..|...|++++|.+.++++++
T Consensus 331 -------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 -------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0123356778999999999999999999999875
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=1.2e-10 Score=99.62 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRS 492 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (647)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667777888889999998888877653 3467778888888888999999999999888764 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (647)
+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988742 3467888889999999999999999999998863 45677888999999999999999
Q ss_pred HHHHHHHHHcC
Q 006396 573 MTFFCQMVEKG 583 (647)
Q Consensus 573 ~~~~~~~~~~~ 583 (647)
...++++++..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999988754
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=3.4e-11 Score=111.12 Aligned_cols=234 Identities=11% Similarity=0.021 Sum_probs=140.0
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 006396 389 CKNGKVADARRLLDTIKLH-------GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK------AI-GPTHVTYTVV 454 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 454 (647)
...|++++|...+++..+. ..+.....+..+...|...|++++|...++...+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665441 11223556777777788888888888888776643 11 1224466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVI------G-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH------NLEP-TSAT 520 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~ 520 (647)
...+...|++++|...++++.+. . .+....++..+...|...|++++|..+++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777888888888888777764 1 1223456667777777778888888877777652 1123 2556
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEH-------NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
+..++.+|...|++++|...++++.+. ...+. ...+..+.......+....+..+ ..+...-
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------- 241 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWY--------- 241 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHH---------
Confidence 677777777778888888777777652 11122 22344444333333333332222 1111100
Q ss_pred hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 593 KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
. ......+....++..++.+|...|++++|.++++++++.
T Consensus 242 ----~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 242 ----K-ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----H-hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 000011233678889999999999999999999998864
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=3.1e-10 Score=91.09 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566777777888888888888877632 2356777778888888888888888888887753 445667778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..|++++|...++++.+.. |.+...+..++.++.+.|++++|.+.++++.+.++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD---------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888888766 66677888888888888888888888888887654
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=3e-10 Score=104.87 Aligned_cols=203 Identities=11% Similarity=-0.104 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhh
Q 006396 13 HDAVFVIAKMKELDLKVSIQTYNSLLYN--LRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETA 90 (647)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 90 (647)
.+|..+++++-+.- ++..-++ .++.. .+++++|...|+++ +..+...|++++|...|.++.
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777652 2222223 44432 22478888887776 346778889999988888876
Q ss_pred cC----CCCcC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 006396 91 GK----EFGPS-VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL---HP--DAFSYNILIHGLCIA-GSMEEALEFTNDM 159 (647)
Q Consensus 91 ~~----~~~~~-~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 159 (647)
.. +.++. ..++..+..+|.+.|++++|+..|+++++... .+ ...++..+...|... |++++|...|++.
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 53 21111 45788888888888888888888888775310 11 133566666777765 7777777777776
Q ss_pred hhCCCCC-C----hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHH
Q 006396 160 GRHGVEP-D----AITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV------TYTVLICGYCQIGNVEEGLKLREV 228 (647)
Q Consensus 160 ~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~ 228 (647)
.+..... + ..++..+...+...|++++|+..|++........... .+..+..++...|++++|...++.
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5531110 0 2345556666666666666666666666543221111 244455555566666666666666
Q ss_pred HHhC
Q 006396 229 MLSQ 232 (647)
Q Consensus 229 ~~~~ 232 (647)
..+.
T Consensus 225 al~l 228 (292)
T 1qqe_A 225 GQSE 228 (292)
T ss_dssp GGCC
T ss_pred HHhh
Confidence 5543
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=5.8e-10 Score=101.29 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC---CHHHHHHHHHHHHcC----------C
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP---DQEICEVMLIAFHQG----------G 622 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g 622 (647)
+..++.++...|++++|+..|+++++.. |. ...++..++.+|... |
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---------------------p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAY---------------------PDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC---------------------CCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 3677899999999999999999999875 33 467899999999876 8
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 006396 623 DLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 623 ~~~~A~~~~~~~~~~~~~ 640 (647)
++++|...++++++..|.
T Consensus 210 ~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 210 RYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHCCC
Confidence 999999999999987654
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.23 E-value=2.8e-08 Score=98.20 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=50.6
Q ss_pred hcC-ChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hhHHHHH
Q 006396 8 RTG-MVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSR-LQDAILF 85 (647)
Q Consensus 8 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 85 (647)
++| ++..|+.+|++++..- |. ++++.+..+|++++.. . |+...|...+....+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~-----------~~~e~~~~iferal~~-~-ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS-----------KDYRSLESLFGRCLKK-S-YNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT-----------TCHHHHHHHHHHHSTT-C-CCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC-----------CCHHHHHHHHHHHhcc-C-CCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 445 3666666666666541 22 5666666666666552 2 355566665555555442 3444555
Q ss_pred HHHhhcC-CCC-cCHHhHHHHHHHHH----hcCChhhHHHHHHHHHh
Q 006396 86 LQETAGK-EFG-PSVVSLNAIMSRYC----KLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 86 ~~~~~~~-~~~-~~~~~~~~~~~~~~----~~g~~~~a~~~~~~~~~ 126 (647)
|+.++.. |.. .+..+|...+..+. ..|+.+.+..+|+++++
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5555432 211 23445555555433 23445556666666655
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=3.6e-09 Score=94.97 Aligned_cols=253 Identities=7% Similarity=-0.024 Sum_probs=164.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 353 YVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
..-.|++..++.-...+ ...........+.+++...|++... ..-.|....+..+...+ ..+ +
T Consensus 23 ~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34467777666632221 1111122223344666666665531 11234443444443333 222 6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++++.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 45666667888888999999999999998876542 24567778888999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHH--HhhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 512 HNLEP-----TSATYNILIDG--LCVNG--DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 512 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..| +..+...|+.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466 34555555555 33344 899999999998764 455333344444899999999999999977653
Q ss_pred CCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 583 GFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
....... ...-|.++.+...++......|+ +|.+++.++.+..|.
T Consensus 241 ~p~~~~k-----------~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 241 YYSVEQK-----------ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHTTTC-----------HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccc-----------ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 1000000 00005678888788877777887 899999999997643
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=5.5e-11 Score=97.08 Aligned_cols=145 Identities=8% Similarity=-0.015 Sum_probs=115.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNG 532 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 532 (647)
|...+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|+++++ +.| ++..|..++.+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 3445566788888888888876531 22344566788899999999999999999998 455 5889999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 533 DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF-FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
++++|...|+++++.+ +.+..++..++.++...|++++|... ++++++.. |.++.+|
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---------------------P~~~~~~ 137 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---------------------PGSPAVY 137 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---------------------TTCHHHH
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---------------------cCCHHHH
Confidence 9999999999999853 44567899999999999999876655 58999887 7788999
Q ss_pred HHHHHHHHcCCC
Q 006396 612 EVMLIAFHQGGD 623 (647)
Q Consensus 612 ~~l~~~~~~~g~ 623 (647)
......+...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 988888888886
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=1.7e-10 Score=106.34 Aligned_cols=229 Identities=13% Similarity=0.034 Sum_probs=160.5
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 006396 354 VKLGNIGEAVQLYRQLIEK-------RISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH------GL-EPSAVTYTTF 419 (647)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 419 (647)
...|+++.|+..+++.++. ..+....++..+...+...|++++|...++.+... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777666552 22334567888899999999999999999988753 21 2345678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETK------A-IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI------G-VTPDQIT 485 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 485 (647)
...|...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1223567888899999999999999999999875 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHH--Hc---CCCCC
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLH-------NLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQ--EH---NISLT 552 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~ 552 (647)
+..+..+|...|++++|..+++++.+. ...+ ....+..+...+...+....+..+..... +. ..+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999998862 1122 23444445444444444333333221111 11 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..++..++.++...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 447888999999999999999999998764
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=4e-10 Score=104.05 Aligned_cols=213 Identities=11% Similarity=-0.009 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AIGPT-HVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 467 (647)
++++|...|... ...|...|++++|...|+..... +-++. ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577899999999999877653 21122 45788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC---C----HHHHHHHHHHHhhcCCh
Q 006396 468 VQLLEDMYVIGVT-PD----QITYNTIIRSFCKC-KDLRKAFQLLNQMWLHNLEP---T----SATYNILIDGLCVNGDL 534 (647)
Q Consensus 468 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~ 534 (647)
+..+++.++.... .+ ..++..+..+|... |++++|+..|++.++. .| + ..++..++..+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999988763211 11 35788899999996 9999999999999872 22 1 45788999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 535 KNADCLLVSLQEHNISLTK------VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
++|...++++.+....... ..+..++.++...|++++|+..++++++.. |+.. .....
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~--------------~~~~~ 238 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFA--------------DSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------------------H
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCC--------------CcHHH
Confidence 9999999999985322211 156788889999999999999999998754 1100 01112
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHhCC
Q 006396 609 EICEVMLIAFH--QGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 609 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~ 638 (647)
..+..++.++. ..+++++|+..++++...+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 34555666665 4577889988887766543
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=2.2e-09 Score=94.69 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ---ITYN 487 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 487 (647)
...+..+...+...|++++|...|+.+.+... .| ....+..+..++.+.|++++|+..++++++.. +.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 34455566677778888888888887776421 11 13456667777778888888888888877753 2222 1344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-------------
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV------------- 554 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------- 554 (647)
.+..++...+.. .+ ..|..+...+...|++++|...|+++++.. |-+..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHH
Confidence 444444431100 00 000111111222344444444444444421 11111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC---HHHHHHHHHHHHcCCCHHHH
Q 006396 555 ----AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD---QEICEVMLIAFHQGGDLGSV 627 (647)
Q Consensus 555 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 627 (647)
....++..+...|++++|+..|+++++.. |.+ ..++..++.++.+.|++++|
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY---------------------PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---------------------cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 12456778899999999999999999876 444 36899999999999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 006396 628 FELAAVMIKSGLLPD 642 (647)
Q Consensus 628 ~~~~~~~~~~~~~~~ 642 (647)
++.++.+...++...
T Consensus 204 ~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 204 EKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHCCSCCC
T ss_pred HHHHHHHHhhCCCch
Confidence 999999998776543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=4.8e-10 Score=116.36 Aligned_cols=173 Identities=12% Similarity=-0.019 Sum_probs=140.8
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 424 CEEGNIQRLLALLQEME--------TKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
...|++++|++.++... +.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788999999998887 332 3455678888888899999999999999988864 5677888888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|++++|...|+++++ +.| +...+..++.+|...|++++ ...|+++++.+ +.+...|..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988 445 57888899999999999999 99999999853 4466788999999999999999999
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
.|+++++.+ |.+..++..++.++...|+
T Consensus 556 ~~~~al~l~---------------------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS---------------------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS---------------------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC---------------------cccHHHHHHHHHHHHccCC
Confidence 999998876 5567888888888877665
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=4.7e-10 Score=97.58 Aligned_cols=164 Identities=10% Similarity=0.005 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT-HVTYTV----------------VIKGLCKQWKLQEAVQLLEDMY 475 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~ 475 (647)
...+......+...|++++|...|+...+. .|+ ...|.. +..++...|++++|+..+++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444556677788888888888887765 333 334444 5555666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC--hhhHHHHHHHHHHcCCCCC
Q 006396 476 VIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGD--LKNADCLLVSLQEHNISLT 552 (647)
Q Consensus 476 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~ 552 (647)
+.. +.+...+..+..++...|++++|...|+++++ +.| +...+..++.+|...|+ .+.+...++++.. ..|.
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 543 44555666666666666666666666666665 233 35556666655544432 2333444444331 1222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...+.....++...|++++|+..|+++++..
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2233444555555666666666666666543
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=5.6e-09 Score=90.95 Aligned_cols=175 Identities=15% Similarity=0.019 Sum_probs=99.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 006396 432 LLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK----DLRKAFQLLN 507 (647)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 507 (647)
|+..|+...+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555443 44555555555555666666666666665543 34455555555555 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 006396 508 QMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNIS-LTKVAYTTIIKAHCA----EGDVHKAMTFFCQ 578 (647)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 578 (647)
+..+.+ ++..+..|...|.. .+++++|..+|++..+.|.. .+...+..+...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665533 45555566666655 56666666666666654311 014556666666665 5666666666666
Q ss_pred HHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC-C-----CHHHHHHHHHHHHhCC
Q 006396 579 MVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG-G-----DLGSVFELAAVMIKSG 638 (647)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 638 (647)
+.+.+ .+...+..++..|... | +.++|..+++++.+.|
T Consensus 155 A~~~~----------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS----------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS----------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC----------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66542 2334556666666543 2 6666666666666554
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=1.6e-09 Score=98.38 Aligned_cols=167 Identities=10% Similarity=-0.002 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHH
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT---HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-T-PDQITYNT 488 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~~ 488 (647)
..+......+...|++++|...|+.+.+.. +.+ ...+..+..++...|++++|+..|+++++... . .....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333444444444444444444444444431 111 23344444444445555555555554444310 0 11223334
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HH-----------------HHHHHHHHHhhcCChhhHHHHHH
Q 006396 489 IIRSFCK--------CKDLRKAFQLLNQMWLHNLEPT-SA-----------------TYNILIDGLCVNGDLKNADCLLV 542 (647)
Q Consensus 489 l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~-~~-----------------~~~~l~~~~~~~g~~~~A~~~~~ 542 (647)
+..++.. .|++++|...|+++++. .|+ .. .+..++.+|...|++++|+..|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 45555555555555441 121 11 13567889999999999999999
Q ss_pred HHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 006396 543 SLQEHNISL--TKVAYTTIIKAHCAE----------GDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 543 ~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 583 (647)
++++..... ....+..++.++... |++++|+..++++++..
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999853111 234788888888876 89999999999999876
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=1.3e-09 Score=100.09 Aligned_cols=165 Identities=9% Similarity=-0.003 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYN-ILI 525 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~ 525 (647)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.. ..|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHH
Confidence 44455666677778888888888888887764 55667778888888888888888888888776 345543332 333
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (647)
..+...++.++|...++++.+.. +.+...+..++.++...|++++|+..++++++.. |
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~---------------------p 250 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD---------------------L 250 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------T
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---------------------c
Confidence 34666777888888888888753 4566788888888888899999998888888876 4
Q ss_pred CC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 606 PD--QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 606 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+ ..++..++.++...|+.++|...+++.+.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 44 67888888888888888888888887654
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=2e-08 Score=90.10 Aligned_cols=180 Identities=12% Similarity=0.029 Sum_probs=121.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 397 ARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMY 475 (647)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 475 (647)
+...+++....+ .++...+..+..++...|++++|++++......+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 45555566777888888888888888888766542 1355667777888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 476 VIGVTP-----DQITYNTIIRS--FCKCK--DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 476 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 24555555555 33334 788888888888763 45433333344478888888888888886654
Q ss_pred c-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 547 H-----NI----SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 547 ~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. +. +.++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 00 3345566666666666776 7888888888766
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.15 E-value=2.2e-09 Score=93.24 Aligned_cols=174 Identities=9% Similarity=-0.040 Sum_probs=133.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT----------------FMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
.+......+...|++++|...|+...... +.+...+.. +..+|...|++++|+..|+...+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445567788999999999999998753 334556666 8889999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHH
Q 006396 444 IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD--LRKAFQLLNQMWLHNLEPTSATY 521 (647)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p~~~~~ 521 (647)
+.+...+..+..++...|++++|...|+++++.. |.+..++..+..+|...|+ .+.+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 4567889999999999999999999999999975 6677888889888876554 4556666666543 33334455
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
..+..++...|++++|...|+++++ +.|+......+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 5667778889999999999999998 567765444443
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.14 E-value=1.3e-07 Score=93.40 Aligned_cols=104 Identities=11% Similarity=-0.091 Sum_probs=57.8
Q ss_pred hcC-ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH
Q 006396 75 QQS-RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS-MEEA 152 (647)
Q Consensus 75 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 152 (647)
+.| +...|+.+|++++.. -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 445 367777777777653 122 7777888888777775 5677777777766655553 3445
Q ss_pred HHHHHHHhhC-CC-CCChhhHHHHHHHHHh----cCChhhHHHHHHHHHh
Q 006396 153 LEFTNDMGRH-GV-EPDAITYSILAKGFHL----LSQISGAWKVIQKLLI 196 (647)
Q Consensus 153 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 196 (647)
..+|+..... |. +.+...|...+..+.. .++.+.+.++|++.+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5666665542 32 2345555555554331 3445566666666665
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.14 E-value=1.6e-09 Score=110.70 Aligned_cols=154 Identities=10% Similarity=-0.041 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 426 EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 505 (647)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776653 3356677778888888888888888888887753 45567777888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 006396 506 LNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE---GDVHKAMTFFCQMVEK 582 (647)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 582 (647)
+++..+.. +.+...+..++.+|...|++++|.+.++++.+.. +.+...+..++.++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887732 2247778888888888888888888888888753 34566777888888888 8888888888888877
Q ss_pred C
Q 006396 583 G 583 (647)
Q Consensus 583 ~ 583 (647)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 6
No 104
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=5.9e-09 Score=83.44 Aligned_cols=131 Identities=14% Similarity=0.181 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLC 529 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 529 (647)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35566667777778888888887777654 4456677777777778888888888888877632 335677777888888
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 530 VNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|++++|...++++.+.. +.+..++..++.++...|++++|...+++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887753 4456677788888888888888888888887654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=9.2e-10 Score=92.87 Aligned_cols=163 Identities=10% Similarity=-0.019 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG-LC 529 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 529 (647)
+......+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++... .|++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 3345556677788888888887776643 455667777788888888888888888877663 3344433332222 12
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHH
Q 006396 530 VNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE 609 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (647)
..++..+|...++++.+.. +.+...+..++.++...|++++|+..++++++.. +-+.+..
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------------------p~~~~~~ 145 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN-------------------LGAQDGE 145 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------------TTTTTTH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------------------cccChHH
Confidence 2233445788888888753 3456788888888888888888888888888765 0012356
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+..++.++...|+.++|...+++.+.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 788888888888888888888887764
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=2e-10 Score=92.88 Aligned_cols=104 Identities=8% Similarity=-0.062 Sum_probs=76.0
Q ss_pred CCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 514 LEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 514 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
+.| +...+..++..+...|++++|...|+++.+.+ |.+...|..++.++...|++++|+..|+++++..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--------- 100 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--------- 100 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---------
Confidence 344 35566777777777777777777777777753 4456677777777777778888887777777776
Q ss_pred hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 593 KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|.++.+|..++.+|.+.|++++|++.++++++..+
T Consensus 101 ------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 101 ------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66677777777777777787778777777777554
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.09 E-value=1.9e-09 Score=84.61 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+......|.+.|++++|+..|+++++.+ +.+...|..++.+|...|++++|+..++++++.+ +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444445555555555555555554421 1134445555555555555555555555555432 223344555555555
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006396 565 AEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~ 583 (647)
..|++++|+..|+++++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 5555555555555555444
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=5.4e-10 Score=91.10 Aligned_cols=124 Identities=10% Similarity=-0.010 Sum_probs=57.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (647)
+..+...|++++|+..++.+....+ .+...+..++..|.+.|++++|...|+++++.. +.++.+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3334444555555555555543211 122244445555555555555555555555443 33444555555555555555
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHH-HHHHHh
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKV-IQKLLI 196 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 196 (647)
++|...|++..+.. +.+...|..+..++...|+.+++.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555554432 22344455555555555554443332 344443
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=5.2e-08 Score=84.77 Aligned_cols=176 Identities=13% Similarity=0.023 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006396 396 DARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQW----KLQEAVQLL 471 (647)
Q Consensus 396 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 471 (647)
+|.+.|++..+. -++..+..+...|...+++++|+..|+...+.+ +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466777777765 367778888888888999999999999988865 56677777777777 6 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhh----cCChhhHHHHHH
Q 006396 472 EDMYVIGVTPDQITYNTIIRSFCK----CKDLRKAFQLLNQMWLHNLE-PTSATYNILIDGLCV----NGDLKNADCLLV 542 (647)
Q Consensus 472 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 542 (647)
++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .++..+..|..+|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998754 66777788888877 88999999999999885421 127888889999988 789999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 006396 543 SLQEHNISLTKVAYTTIIKAHCAE-G-----DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 583 (647)
+..+. +.+...+..+...|... | ++++|+.+|+++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99985 34566788888888653 3 8999999999999887
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.5e-09 Score=91.55 Aligned_cols=163 Identities=12% Similarity=-0.044 Sum_probs=84.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG- 142 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 142 (647)
..+...+..+...|++++|+..|++++...+ .+...+..+...+.+.|++++|...++++.+.. |++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 3455556666666666666666666655432 245566666666666666666666666665542 233322222111
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHH
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP-DIVTYTVLICGYCQIGNVEE 221 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 221 (647)
+...+...+|...+++..+.. |.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 111122223455555555431 2245555555555555666666666665555543221 13345555555555555555
Q ss_pred HHHHHHHHH
Q 006396 222 GLKLREVML 230 (647)
Q Consensus 222 a~~~~~~~~ 230 (647)
|...|+..+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=9.4e-10 Score=114.22 Aligned_cols=173 Identities=10% Similarity=-0.098 Sum_probs=109.0
Q ss_pred HhcCChhHHHHHHHHhh--------cCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 74 CQQSRLQDAILFLQETA--------GKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
...|++++|+..|+++. ...+ .+...+..++..+.+.|++++|...|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 3322 244566666777777777777777777777653 4456666667777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006396 146 AGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKL 225 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (647)
.|++++|.+.|++..+.. +.+...|..+..++...|++++ .+.|++..+.+.. +...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776652 3355666677777777777777 7777777665322 445666677777777777777777
Q ss_pred HHHHHhCCCCcCcccHHHHHHHHHhcC
Q 006396 226 REVMLSQGFKLNVIAYSVLLSSMCKSG 252 (647)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (647)
|++..+.+.. +...+..+..++...+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 7776655322 3445555666655433
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=1.5e-08 Score=89.42 Aligned_cols=184 Identities=10% Similarity=-0.063 Sum_probs=99.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDA---FSYNIL 139 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l 139 (647)
.+..++..+...|++++|+..|++++...+... ...+..++.++.+.|++++|...|+++++.. +.+. .++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 344455555566666666666666554322211 2345555555666666666666666655542 1111 123333
Q ss_pred HHHHH------------------hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 006396 140 IHGLC------------------IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP 201 (647)
Q Consensus 140 ~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (647)
..++. ..|++++|...|+++.+.. |-+...+........ +...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~~------ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRLA------ 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHHH------
Confidence 33332 3566777777777776652 223333322211100 000000
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006396 202 DIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL--NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG 268 (647)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 268 (647)
.....+...+...|++++|...|+.+.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345667778888888888888887763221 12457778888888888888888888877763
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.04 E-value=1.9e-07 Score=84.99 Aligned_cols=222 Identities=9% Similarity=0.006 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---C
Q 006396 357 GNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNG--KVADARRLLDTIKLHGLEPSAVTYTTFMNAY----CEE---G 427 (647)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 427 (647)
...++|++++..++..++. ....|+.-..++...+ +++++...++.+.... +-+...|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3446788888888876433 4455666666666677 8888888888887753 33444555444444 444 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------H
Q 006396 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQ--EAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD------L 499 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 499 (647)
++++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++++++.. +-+...|+.-.......+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7889999999888764 557778888777777788877 8999999999875 5677778777777767666 8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN-ADCLLVSLQEHN--ISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
+++++.+++++..+ +-|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++.++.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999998842 3378999999989988887544 556777666532 1346678999999999999999999999
Q ss_pred HHHHH-cC
Q 006396 577 CQMVE-KG 583 (647)
Q Consensus 577 ~~~~~-~~ 583 (647)
+.+.+ .+
T Consensus 282 ~~l~~~~D 289 (306)
T 3dra_A 282 DLLKSKYN 289 (306)
T ss_dssp HHHHHTTC
T ss_pred HHHHhccC
Confidence 99987 45
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=7.4e-08 Score=87.62 Aligned_cols=170 Identities=9% Similarity=-0.077 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC--ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH----Hhc---CCh
Q 006396 44 TDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQS--RLQDAILFLQETAGKEFGPSVVSLNAIMSRY----CKL---GFA 114 (647)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---g~~ 114 (647)
.++|+.+++.++..+| .+..+|+.-..++...| ++++++..++.++...+. +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 3456666666665444 44445555555555555 666666666666554332 233444333333 333 455
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC------hhh
Q 006396 115 EVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME--EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ------ISG 186 (647)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 186 (647)
++++.+++++++.. +.+..+|+...-.+.+.|.++ ++++.++.+.+.+ +.|...|+....++...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 56666666665543 444555555544445555555 5555555555542 2344555544444444433 444
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 006396 187 AWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN 218 (647)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (647)
+++.+++++...+. |...|+.+-..+.+.|+
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 44444444443222 33344444333333333
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=1.2e-08 Score=89.20 Aligned_cols=144 Identities=12% Similarity=-0.008 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA 565 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (647)
+..+...+...|++++|...++++. .|+...+..++.+|...|++++|...++++.+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4556677888899999999998773 5678899999999999999999999999999863 4567789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.|++++|+..++++++..-......+. ...... +....++..++.++.+.|++++|.+.++++++.++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYK------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECG------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHH------HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999865100000000 000001 123488999999999999999999999999987754
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.01 E-value=1.3e-08 Score=79.80 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=96.3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 006396 444 IGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATY 521 (647)
Q Consensus 444 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 521 (647)
+.|+ ...+......+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHH
Confidence 3444 3467788899999999999999999999875 66788999999999999999999999999998 445 58899
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
..++.+|...|++++|.+.|+++++.. |.+...+..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 999999999999999999999999953 334556555544
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.01 E-value=5.2e-09 Score=96.07 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=97.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH-H
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSIL-A 175 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~ 175 (647)
+...+...+..+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|...++++... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455666666666666666666666666653 345556666666666666666666666666553 2333222222 2
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CcccHHHHHHHHHhcCCh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL-NVIAYSVLLSSMCKSGRI 254 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 254 (647)
..+...++.+.|.+.+++.....+. +...+..+...+...|++++|.+.++.+.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2244555666666666666655321 44556666666667777777777776666653221 244566666777777777
Q ss_pred hHHHHHHHHHH
Q 006396 255 DEALGLLYEME 265 (647)
Q Consensus 255 ~~a~~~~~~~~ 265 (647)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 76666666543
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=2.2e-08 Score=102.20 Aligned_cols=164 Identities=9% Similarity=-0.095 Sum_probs=115.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
.|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888887653 4457788888888999999999999999888764 44577888888888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc---CChhhHHHHHHHHHHc
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN---GDLKNADCLLVSLQEH 547 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 547 (647)
+++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988864 5567788888899999999999999999988832 23577888888888888 8999999999999885
Q ss_pred CCCCCHHHHHHH
Q 006396 548 NISLTKVAYTTI 559 (647)
Q Consensus 548 ~~~~~~~~~~~l 559 (647)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 4 3333344333
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=2.4e-09 Score=86.88 Aligned_cols=96 Identities=8% Similarity=-0.077 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|...|+.++..+ +.+...|..++.+|...|++++|...|+++.+.+ +.+...+..++.++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444444555555555555555554421 1234445555555555555555555555555432 223344555555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006396 565 AEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~ 582 (647)
..|++++|+..|+++++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555543
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=1.6e-07 Score=86.65 Aligned_cols=167 Identities=11% Similarity=-0.029 Sum_probs=125.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHH
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGV-TPDQ----ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EPT----SATYNI 523 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 523 (647)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...+++++.... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999999887421 1221 1233566777788899999999999987322 222 347899
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEH-----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
++.+|...|++++|...++++++. +..+. ..++..++.+|...|++++|+.+++++++..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-------------- 226 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-------------- 226 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------
Confidence 999999999999999999999841 11222 2378899999999999999999999998643
Q ss_pred hhhhCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 006396 598 MMLSNGFPP-DQEICEVMLIAFHQGG-DLGSVFELAAVMIK 636 (647)
Q Consensus 598 ~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 636 (647)
...+..+ -..++..++.++.+.| ++++|.+.+++++.
T Consensus 227 --~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 --CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 0111122 2789999999999999 46999999999874
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=1.6e-08 Score=93.96 Aligned_cols=174 Identities=14% Similarity=0.016 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQ 465 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~ 465 (647)
.++++.|...|... ...|...|++++|...|....+. +-.+ ...+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666665544 23455666777766666655432 1000 1235666667777777777
Q ss_pred HHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChh
Q 006396 466 EAVQLLEDMYVIGV---TP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 466 ~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 535 (647)
+|+..+++..+... .+ ...++..+..+|.. |++++|+..+++.++. +..+ ...++..++.+|...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 77777777665310 11 12456677777777 8888888888887752 1001 1466778888888888888
Q ss_pred hHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 536 NADCLLVSLQEH----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 536 ~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
+|+..++++.+. +..+. ...+..++.++...|++++|+..|++++
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888762 11111 1256666777777888999988888887
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=4.7e-08 Score=81.46 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666777778888888888888887732 2357778888888888888888888888888753 44566888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHH
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVML--IAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~ 635 (647)
...|++++|+..++++++.. |.+...+..+. ..+.+.|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~---------------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK---------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888876 55666664444 44777888888888887764
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=5e-07 Score=83.30 Aligned_cols=170 Identities=10% Similarity=-0.051 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--H
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ------ITYNTIIRSFCKCKDLRKAFQLLNQMWLHN---LEPT--S 518 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~--~ 518 (647)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...++++.+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566777888999998888887775322 22 223445666778899999999999988631 1122 5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEH--NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
.+++.++..|...|++++|...++++.+. ..+.+ ..++..++.+|...|++++|+.+++++++...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-------- 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-------- 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--------
Confidence 58899999999999999999999999831 11222 25788999999999999999999999986430
Q ss_pred hHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 006396 593 KSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSV-FELAAVMIK 636 (647)
Q Consensus 593 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 636 (647)
..+... -..++..++.+|.+.|++++| ...+++++.
T Consensus 228 --------~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 --------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --------HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --------hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 001112 267899999999999999999 777888763
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=2.1e-08 Score=84.64 Aligned_cols=122 Identities=9% Similarity=0.084 Sum_probs=79.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhhcCCh--h
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG-LCVNGDL--K 535 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 535 (647)
...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776653 4556677777777777777777777777777632 2246666666766 6667776 7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+|...++++.+.+ +.+...+..++.++...|++++|+..++++++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777643 3345567777777777777777777777777665
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=4.6e-08 Score=90.86 Aligned_cols=207 Identities=9% Similarity=-0.044 Sum_probs=150.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 390 KNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
..|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567788888888776531 111 011147788887777664 456778899999999
Q ss_pred HHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHhhcCChhhHHH
Q 006396 470 LLEDMYVIGV---TP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH--N-LEPT--SATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 470 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.+.+..+... .+ -..++..+..+|...|++++|...+++.++. . -.+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9998876321 11 1347888899999999999999999998762 1 1222 4678889999988 99999999
Q ss_pred HHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHH
Q 006396 540 LLVSLQEHNIS---L--TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEV 613 (647)
Q Consensus 540 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 613 (647)
.++++++.... + ...++..++.++...|++++|+..|+++++.... .+..+. ...+..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE----------------MENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------cCChhHHHHHHHH
Confidence 99999863111 1 1357888999999999999999999999874300 001111 346778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 614 MLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++.++...|++++|...+++++ ..+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 8889999999999999999998 544
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.85 E-value=4.5e-08 Score=91.99 Aligned_cols=127 Identities=13% Similarity=-0.048 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT----------------SATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
.+..+...+.+.|++++|...|+++++. .|+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444444555555555555555442 121 4667777777777777777777777777753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHH-
Q 006396 549 ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSV- 627 (647)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 627 (647)
+.+...+..++.++...|++++|+..|+++++.. |.+..++..++.++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---------------------PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777777766 66677777777777777777777
Q ss_pred HHHHHHHH
Q 006396 628 FELAAVMI 635 (647)
Q Consensus 628 ~~~~~~~~ 635 (647)
...+++|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555554
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=2.1e-07 Score=81.25 Aligned_cols=126 Identities=10% Similarity=-0.131 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
+..++..+...|++++|+..|+++. .|+..++..++..+...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4566777788888888888888775 3467788888888888888888888888888764 4566778888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 146 AGSMEEALEFTNDMGRHGVEPDA----------------ITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.|++++|.+.|++..+.. +.+. ..+..+..++...|++++|.+.|++....
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888887752 2222 56777777788888888888888887765
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=1.7e-08 Score=81.46 Aligned_cols=97 Identities=9% Similarity=-0.089 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|...|+.++..+ +.+...|..++.+|...|++++|...|+++.+.+ +.+...+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444455555555555555555555521 1245555555555555555555555555555532 333445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006396 565 AEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~ 583 (647)
..|++++|+..|+++++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555543
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=8.9e-07 Score=81.60 Aligned_cols=165 Identities=12% Similarity=0.012 Sum_probs=125.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAI-GPTHV----TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-PD----QITYN 487 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 487 (647)
..+..+...|++++|...++...+... .|+.. .+..+...+...|++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887431 22221 2334666677788999999999999984322 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC-HHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWL----H-NLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLT-KVAY 556 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 556 (647)
.+..+|...|++++|..+++++++ . +..+. ..++..++.+|...|++++|...++++++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999984 1 12222 457889999999999999999999998852 22222 5588
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 006396 557 TTIIKAHCAEG-DVHKAMTFFCQMVEK 582 (647)
Q Consensus 557 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 582 (647)
..++.++...| ++++|...+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 469999999998863
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.84 E-value=1.4e-07 Score=73.93 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777888888888888777632 2356777778888888888888888888887753 4456677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG 621 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (647)
+...|++++|...++++.+.. |.+...+..++.++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD---------------------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHhc
Confidence 888888888888888888776 66677777777666544
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=7.3e-08 Score=76.69 Aligned_cols=120 Identities=12% Similarity=-0.030 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567778888888888888888888888742 2357788888888888888888888888888753 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
.++...|++++|+..++++++.. |.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD---------------------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC---------------------CCchHHHHHHHHHHHHhcC
Confidence 88888899999999998888876 5556777777777766553
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=6.2e-08 Score=78.24 Aligned_cols=98 Identities=8% Similarity=-0.048 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
...+..+...+.+.|++++|...|++++. ..| ++..|..++.+|...|++++|+..|+++.+.. |.++..|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44667777788888888888888888888 345 58888888888888889999999888888853 445678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++...|++++|+..|+++++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888899999999998888865
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=9.9e-08 Score=75.60 Aligned_cols=119 Identities=12% Similarity=0.018 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4556667777778888888888888877732 2357777888888888888888888888888753 4456678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDL 624 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (647)
+...|++++|...++++++.. |.+...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD---------------------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC---------------------ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888876 66777888888888777764
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.82 E-value=5.8e-08 Score=76.40 Aligned_cols=95 Identities=13% Similarity=-0.002 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|...|++.++.. +.+...|..++.+|...|++++|...++++++.+ +.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555555555555555555555521 1235555555555555555555555555555532 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~ 581 (647)
..|++++|+..++++++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555554
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=1e-06 Score=81.18 Aligned_cols=168 Identities=8% Similarity=-0.034 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--H
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTH-----VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV---TPD--Q 483 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 483 (647)
..+...+..+...|++++|...++...+....... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667788889999999998887765322111 1233455667788899999999999886421 112 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC----CCCC-
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHN----ISLT- 552 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~- 552 (647)
.+++.+...|...|++++|..+++++.+ .+..+ ...++..++.+|...|++++|...++++++.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999999873 11111 12688899999999999999999999988531 1111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006396 553 KVAYTTIIKAHCAEGDVHKA-MTFFCQMVE 581 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 581 (647)
..++..++.++...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 55788999999999999999 788888875
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=4e-08 Score=77.17 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
...+..++..+.+.|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..++++++.. |+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~---------- 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RE---------- 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cc----------
Confidence 4567788999999999999999999999863 4467789999999999999999999999998754 00
Q ss_pred hhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 598 MMLSNGFPPD----QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 598 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
.+++ ..+|..++.++...|++++|++.++++++..+.|+
T Consensus 75 ------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 75 ------TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred ------cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 0111 35788899999999999999999999998766554
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.79 E-value=5e-08 Score=75.79 Aligned_cols=99 Identities=7% Similarity=-0.011 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhh
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (647)
.+..++..+.+.|++++|...++++++.. +.+...|..++.++...|++++|+..++++++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---------------- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 34566777888889999999998888853 4466788888888888999999999999988887
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 600 LSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..++..++.++.+.|++++|++.++++++.+|.
T Consensus 82 -----P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 82 -----PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 777888888999999999999999999888876543
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=1.2e-07 Score=82.13 Aligned_cols=96 Identities=7% Similarity=-0.027 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCC----H
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH--NISLT----K 553 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~ 553 (647)
++..+...+...|++++|...+++... .+..| ...++..+...+...|++++|...+++..+. ..+.+ .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 344444444444444444444444433 01111 1333444444444555555555544444431 00001 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
.++..++.++...|++++|...+++++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 134444444555555555555555444
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=1.4e-07 Score=83.51 Aligned_cols=128 Identities=8% Similarity=-0.100 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAE 566 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 566 (647)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 334444555555555555555442 2322244444445555555555555555433210 110 12445555555555
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP--DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|++++|+..|+++.... ..| ....+...+.++.+.|+.++|...|+++...+|
T Consensus 185 G~~~eAl~~l~~a~~g~--------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSP--------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTST--------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCC--------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555555555554321 102 234555555555555555555555555555443
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.78 E-value=7.5e-08 Score=73.81 Aligned_cols=103 Identities=9% Similarity=-0.085 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------- 70 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI------------- 70 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 35566777888888888888888888888753 4456688888888888899999999999888876
Q ss_pred HhhhhCCCCC--CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCC
Q 006396 597 CMMLSNGFPP--DQEICEVMLIAFHQG-GDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 597 ~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 641 (647)
|. +...+..++.++.+. |++++|.+.++++++.++.+
T Consensus 71 --------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 71 --------EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp --------CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred --------cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 56 788888899999999 99999999999988876544
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=8.3e-08 Score=84.98 Aligned_cols=189 Identities=9% Similarity=-0.075 Sum_probs=125.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHH-------HHHHHhcCChhHHHHHHHHhhcCCCC-----cC----------
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIV-------IDGLCQQSRLQDAILFLQETAGKEFG-----PS---------- 97 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~---------- 97 (647)
..++++.|++.|.+++...| ....+|..+ ..++...++..+++..+++.....+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 45778888888888887555 667778777 67777777777787777776652111 01
Q ss_pred -----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--hhh
Q 006396 98 -----VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD--AIT 170 (647)
Q Consensus 98 -----~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 170 (647)
......++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 2244556777888888888888888777653 433355556667778888888888887554421 111 235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 171 YSILAKGFHLLSQISGAWKVIQKLLIKGSDPD--IVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66677777777888888888777764322243 224455566667777777777777777765
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.78 E-value=1.6e-06 Score=79.70 Aligned_cols=171 Identities=10% Similarity=-0.019 Sum_probs=97.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhc-C-Chhh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQS-RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKL-G-FAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~~~ 116 (647)
.....++|+++++.++..+| .+..+|+....++...| .+++++..++.++...+. +..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 34445667777777776554 45556666666666666 477777777777765543 555666666666555 5 6677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME--------EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ----- 183 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 183 (647)
++.+++++++.. +.|..+|+...-.+.+.+.++ ++++.++++.+.. +.|...|+....++.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 777777777654 445555555444444444444 6666666666542 3355666666555555554
Q ss_pred --hhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 184 --ISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 184 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
++++++.+++++...+. |...|+.+-..+.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 45555555555544222 34444443333333
No 143
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=2.2e-06 Score=78.75 Aligned_cols=232 Identities=10% Similarity=0.002 Sum_probs=162.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG-FAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
+..+.......+..++|+.+++.++..++. +..+|+.-...+...| .+++++..++.++... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333434444555667999999999987644 6678888888888888 5999999999999886 567778888777776
Q ss_pred hc-C-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 006396 145 IA-G-SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQIS--------GAWKVIQKLLIKGSDPDIVTYTVLICGYC 214 (647)
Q Consensus 145 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (647)
.. + ++++++++++.+.+.. +.+..+|+...-++...+.++ ++++.++++++..+. |..+|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 8899999999998863 457778877666666666666 888999998887543 6777888777777
Q ss_pred hcCC-------hHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHC
Q 006396 215 QIGN-------VEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRI--------------------DEALGLLYEMEAV 267 (647)
Q Consensus 215 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~ 267 (647)
+.+. ++++++.++......+. |...|+.+-..+.+.|+. ....+...++...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 7765 67888888888877544 777787776666666653 1222222222221
Q ss_pred C-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 268 G-----LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 268 ~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 0245566677777777777777777777777543
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=2.9e-08 Score=90.65 Aligned_cols=195 Identities=11% Similarity=-0.025 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (647)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777888888888888777653 3356677777777888888888888888877653 455677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEPTS-ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
++...|++++|...|+++.+. .|+. ..+...+....+ ..++... ........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 888888888888888877762 2210 011111111111 1111111 222222334444444444332 258888
Q ss_pred HHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 006396 571 KAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG-GDLGSVFELAAVMIKS 637 (647)
Q Consensus 571 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 637 (647)
+|++.++++++.. |.+......+...+.+. +.+++|.+++.++.+.
T Consensus 153 ~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGH---------------------EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTT---------------------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccc---------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888877765 55555556666666665 6678888888877653
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.76 E-value=4.7e-08 Score=79.20 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=92.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 435 LLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
.|+.+.... +.+...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|...|++++..
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 455555432 2244567778888999999999999999999875 668888999999999999999999999999983
Q ss_pred CC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 515 EP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 515 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
.| ++..+..++.+|...|++++|...|+++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45 5788999999999999999999999999984
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.76 E-value=4.3e-07 Score=75.46 Aligned_cols=130 Identities=8% Similarity=-0.016 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGL 528 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (647)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888899999999998888764 5567788888888999999999999999988842 33578888899999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTT--IIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998853 334555533 34447788999999999887754
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=9.8e-08 Score=79.22 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 482 DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 482 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
+...+..+...+...|++++|...|++.++. .| +...|..+..+|...|++++|+..++++++.. +.+...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4556778888888899999999999998883 34 68888888899999999999999999998853 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|+..|+++++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988876
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=5.8e-08 Score=88.69 Aligned_cols=100 Identities=12% Similarity=-0.084 Sum_probs=78.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.+...+..++..+...|++++|+..|++++...+. +...+..++.++.+.|++++|...++++++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34566777888888888888888888888775432 66778888888888888888888888888764 45667778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC
Q 006396 141 HGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887664
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=9.1e-08 Score=80.66 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=86.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHH-HHhcCCh--hh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSR-YCKLGFA--EV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~--~~ 116 (647)
..|+++.|...++.++...+ .++..|..++.++...|++++|+..|+++....+ .+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 45677777778887776554 5667788888888888888888888888776543 256677777777 6677887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
|...++++.+.. +.+...+..+...+...|++++|...|+.+.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887764 445667777777888888888888888887775
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.72 E-value=1.7e-07 Score=74.96 Aligned_cols=101 Identities=8% Similarity=-0.087 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
.+...+..+...+...|++++|...|++.+... +.+...+..++.++...|++++|...++++.+.+ +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666666677777777766666631 2245666666666666667777776666666642 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|+..++++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 66666677777766666666543
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=3.1e-07 Score=71.09 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
..+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445556666666677777777776666531 2245666666666666667777766666666642 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006396 564 CAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~ 583 (647)
...|++++|...++++++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66667777766666666654
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=2e-07 Score=74.07 Aligned_cols=118 Identities=8% Similarity=-0.095 Sum_probs=82.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.+...+..++..+...|++++|+..|+++....+ .+..++..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4456677778888888888888888888776543 256677777777888888888888888877764 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLL 181 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (647)
..+...|++++|.+.|++..+.. +.+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 77778888888888887776642 22344555555555443
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=3.7e-07 Score=71.50 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
...+..++..+...|++++|.+.++++.+.. +.+..++..++.++...|++++|+.+++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------
Confidence 6788889999999999999999999999863 4567789999999999999999999999999877
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+...+..++.++...|++++|...++++.+.++.
T Consensus 74 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 74 -------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 778899999999999999999999999999987643
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=1.6e-08 Score=95.09 Aligned_cols=149 Identities=9% Similarity=-0.102 Sum_probs=97.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--------------HHhHHHHHHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--------------VVSLNAIMSRY 108 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 108 (647)
+++.|...|+......+ .+...+..++..+...|++++|+..|++++...+... ..++..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332111 3455677778888888888888888888776543322 45677777777
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH-
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA- 187 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a- 187 (647)
.+.|++++|+..|+++++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777664 4456677777777777777777777777776652 33556666677777777766666
Q ss_pred HHHHHHH
Q 006396 188 WKVIQKL 194 (647)
Q Consensus 188 ~~~~~~~ 194 (647)
...++.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=7.3e-07 Score=68.90 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILID 526 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 526 (647)
....+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888889999999999999999999864 5678889999999999999999999999999842 335888999999
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 527 GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
++...|++++|...++++.+.+ +.+...+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 9999999999999999999853 3345555555443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=9.2e-07 Score=71.74 Aligned_cols=116 Identities=15% Similarity=0.017 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 556 (647)
.+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...++++.+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 3556677778888888888888888888887 4455 6778888888888999999999998888753 4456688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ 620 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (647)
..++.++...|++++|...++++++.. |.+..++..+.....+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE---------------------PKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCcHHHHHHHHHHHhh
Confidence 888888999999999999999988876 5666777666665443
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=2.9e-07 Score=72.19 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCC----HHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHN--ISLT----KVAY 556 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~ 556 (647)
..+..+...+.+.|++++|+..|+++++ +.| +...|..++.+|...|++++|+..++++++.+ ..++ ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4566788889999999999999999988 445 58889999999999999999999999988632 1111 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..++.++...|++++|++.|++++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 788899999999999999999998854
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=4.3e-07 Score=78.08 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--------------CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EP--------------TSATYNILIDGLCVNGDLKNADCLLVSLQEHNI 549 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 549 (647)
.+..+...+...|++++|...|+++++... .| ....+..++.+|...|++++|...++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344555566666666666666666665210 11 02677888888999999999999999998853
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH-
Q 006396 550 SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVF- 628 (647)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 628 (647)
+.+...+..++.++...|++++|+..|+++++.. |.+..++..++.++...|+.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---------------------PNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---------------------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999998876 677888888888888888888777
Q ss_pred HHHHHHHhCCC
Q 006396 629 ELAAVMIKSGL 639 (647)
Q Consensus 629 ~~~~~~~~~~~ 639 (647)
..++.+...+.
T Consensus 178 ~~~~~~f~~~~ 188 (198)
T 2fbn_A 178 LTFGGMFDKGP 188 (198)
T ss_dssp -----------
T ss_pred HHHHHHhcccc
Confidence 55666655443
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=8.1e-08 Score=77.37 Aligned_cols=98 Identities=11% Similarity=-0.039 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (647)
...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|++++..+ +.++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4456677788899999999999999999875 6678889999999999999999999999999842 2357888899999
Q ss_pred HhhcCChhhHHHHHHHHHHc
Q 006396 528 LCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~ 547 (647)
|...|++++|...|+++.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999974
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=2.8e-07 Score=72.94 Aligned_cols=118 Identities=13% Similarity=-0.014 Sum_probs=77.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...+..++..+...|++++|+..|+++....+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 44566667777777777777777777765432 245667777777777777777777777777653 3446666677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ 183 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (647)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777776652 3355556666666655554
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=3.3e-07 Score=79.25 Aligned_cols=84 Identities=11% Similarity=-0.054 Sum_probs=35.2
Q ss_pred hcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 006396 75 QQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY----GL-HPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 149 (647)
..|++++|...++.... .+.....++..+...+...|++++|...++++.+. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553332222 11122334455555555555555555555554431 00 11122344444455555555
Q ss_pred HHHHHHHHHH
Q 006396 150 EEALEFTNDM 159 (647)
Q Consensus 150 ~~a~~~~~~~ 159 (647)
++|.+.+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.61 E-value=4.1e-07 Score=71.43 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=75.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...|..++..+...|++++|+..|++++...+ .+...|..++.++.+.|++++|...|+++++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34566777788888888888888888877543 256778888888888888888888888888764 4556777778888
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 006396 143 LCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~ 162 (647)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877664
No 163
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.61 E-value=5e-05 Score=69.46 Aligned_cols=186 Identities=8% Similarity=-0.076 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQW--KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD-LRKAFQL 505 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 505 (647)
+++++.+++.+.... +-+..+|+.-...+...+ .+++++.+++++.+.. +-+..+|+.-.......|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666777666643 446666766666666666 3778888888887764 5666777766666666776 5788888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhc--------------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 006396 506 LNQMWLHNLEPTSATYNILIDGLCVN--------------GDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE----- 566 (647)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 566 (647)
++.+++.+ +-|...|+....++... +.++++++.+.+++... |-|..+|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 88887742 23567776666655544 45778888888888753 55666777655555554
Q ss_pred ------CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHH---HHHHcCCCHHHHHHHHHHHHhC
Q 006396 567 ------GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVML---IAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 567 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+.++++++.++++++.. |.+.-++..++ ......|..++...++.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~---------------------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE---------------------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC---------------------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45789999999999876 44433333322 2233568888999999999886
Q ss_pred CC
Q 006396 638 GL 639 (647)
Q Consensus 638 ~~ 639 (647)
+|
T Consensus 305 Dp 306 (331)
T 3dss_A 305 DP 306 (331)
T ss_dssp CG
T ss_pred Cc
Confidence 64
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=8.3e-07 Score=72.01 Aligned_cols=102 Identities=17% Similarity=-0.011 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhh
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDY 591 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 591 (647)
.+...+..++..+...|++++|...|+++.+. .|+ ...+..++.++...|++++|+..++++++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------- 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------
Confidence 35788899999999999999999999999984 465 5688899999999999999999999999887
Q ss_pred hhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 592 TKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+...+..++.++...|++++|...++++++.++.
T Consensus 96 -------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 96 -------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp -------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred -------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 778999999999999999999999999999987643
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.60 E-value=3.1e-07 Score=72.98 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-------------KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK--- 582 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 582 (647)
..+...+..+.+.|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34455566667777777777777777763 232 238899999999999999999999999987
Q ss_pred ----CCcccchhhhhHHHHhhhhCCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 583 ----GFEISIRDYTKSFFCMMLSNGFPPDQEIC----EVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 583 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
. |.+...| ...+.++...|++++|+..|+++++..|
T Consensus 90 ~~e~~---------------------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELN---------------------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTT---------------------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCC---------------------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6 6668899 9999999999999999999999987543
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.59 E-value=6.7e-07 Score=68.36 Aligned_cols=101 Identities=9% Similarity=-0.092 Sum_probs=80.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHP--DAFSYNI 138 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 138 (647)
.+...+..++..+...|++++|+..|+++....+ .+...+..++..+...|++++|...|+++.+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 5567788888888888888888888888877543 356678888888888888888888888888774 44 5777888
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhhCC
Q 006396 139 LIHGLCIA-GSMEEALEFTNDMGRHG 163 (647)
Q Consensus 139 l~~~~~~~-~~~~~a~~~~~~~~~~~ 163 (647)
+...+... |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887753
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=6.3e-07 Score=71.61 Aligned_cols=101 Identities=11% Similarity=-0.043 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNIL 524 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 524 (647)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4567888999999999999999999999999875 5678889999999999999999999999999842 3358899999
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+.+|...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.58 E-value=1e-06 Score=69.47 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-S---ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTI 559 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 559 (647)
..+...+...|++++|...|+.+.+. .|+ . ..+..++.++...|++++|...++++.+.. +.+ ..++..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 34556666777777777777777763 232 2 466667777777777777777777777642 223 4566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.++...|++++|+..++++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 777777777777777777777665
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=6.6e-05 Score=68.66 Aligned_cols=222 Identities=12% Similarity=0.030 Sum_probs=155.8
Q ss_pred HhcCCH-HHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006396 354 VKLGNI-GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGK----------VADARRLLDTIKLHGLEPSAVTYTTFMNA 422 (647)
Q Consensus 354 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (647)
.+.|.+ ++|++++..++..++. +..+|+.--..+...+. ++++...++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345554 4788888888876433 33444433333322222 567888888887753 5577788777777
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 006396 423 YCEEG--NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC--- 496 (647)
Q Consensus 423 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 496 (647)
+...+ ++++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++.+++.. +-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77777 4889999999998875 5577788887777777887 689999999999875 56777777666655544
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc-----------CChhhHHHHHHHHHHcCCCCCH
Q 006396 497 -----------KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVN-----------GDLKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 497 -----------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 553 (647)
+.++++++++...+. ..| |...|+.+-..+... +.++++++.++++.+. .|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 457899999999988 445 688887766666655 4578999999999984 4654
Q ss_pred H-HHHHHH---HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 554 V-AYTTII---KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 554 ~-~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. ++..++ .+....|..+++..++.++.+.+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 2 222222 12234688889999999999876
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.58 E-value=7.4e-07 Score=73.84 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNIL 524 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 524 (647)
.+...+..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..++++++. .| +...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 345678888899999999999999999999874 567889999999999999999999999999984 45 58899999
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
..+|...|++++|...|+++++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999985
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.58 E-value=3.5e-07 Score=72.34 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++... +
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~---------- 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--E---------- 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--c----------
Confidence 4667788889999999999999999999863 55677889999999999999999999999987650 0
Q ss_pred hhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 598 MMLSNGFPPD----QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 598 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+++ ..++..++.++...|++++|.+.++++++.++.
T Consensus 71 ------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 71 ------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp ------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 0122 778999999999999999999999999987653
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=5.8e-07 Score=74.30 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CC-CHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLH--------NL--------EP-TSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
...+......+.+.|++++|...|.+.+.. .. .| +...|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788888889999999998888763 00 22 24677778888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 546 EHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.+ +.+...|..++.++...|++++|+..|++++...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 753 4456678888888888888888888888888876
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.51 E-value=1.7e-07 Score=72.45 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=63.0
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 495 KCKDLRKAFQLLNQMWLHNL-EP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (647)
..|++++|+..|+++++.+. .| +...+..++.+|...|++++|...++++++.. +.+..++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888887321 23 46677788888888888888888888888753 44566778888888888888888
Q ss_pred HHHHHHHHHcC
Q 006396 573 MTFFCQMVEKG 583 (647)
Q Consensus 573 ~~~~~~~~~~~ 583 (647)
+..+++++...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888888765
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=3.4e-07 Score=86.03 Aligned_cols=153 Identities=15% Similarity=-0.003 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (647)
...+..+...+.+.|++++|...|++.++. .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666666677777888888888777764 233221 222333333332221 1378889999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD 607 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (647)
|.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++.. |.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---------------------p~~ 297 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---------------------PDD 297 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------------CCC
Confidence 999999999999999999853 4467799999999999999999999999998876 666
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCC
Q 006396 608 QEICEVMLIAFH-QGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 608 ~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
..++..+..+.. ..+..+++...++++++..+..
T Consensus 298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 298 KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 778888877744 4577888999999998866543
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=9.1e-07 Score=68.59 Aligned_cols=97 Identities=10% Similarity=-0.121 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..+..++..+.+.|++++|+..|++++...+. +...|..+..++...|++++|+..|+++++.. +.+...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35666777788888888888888888775432 56677788888888888888888888887764 44566777777788
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 006396 144 CIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~ 162 (647)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.48 E-value=1.4e-06 Score=68.79 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC--CCC----HHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNI--SLT----KVAYT 557 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 557 (647)
..+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566667777777777777777777632 23566777777777777888888877777776321 111 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++.++...|++++|...++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77788888888888888888887754
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.3e-06 Score=72.16 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH----NISL-TKV 554 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 554 (647)
++..+...+...|++++|...+++..+... .++ ..++..++..+...|++++|...++++.+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456666677777777777777777665210 011 246777888888888888888888887752 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
++..++.++...|++++|...++++++..-. .+. +....++..++.++...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----------------LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6777888888999999999999888754200 001 11256778888999999999999999988
Q ss_pred HHhC
Q 006396 634 MIKS 637 (647)
Q Consensus 634 ~~~~ 637 (647)
+++.
T Consensus 155 a~~~ 158 (164)
T 3ro3_A 155 HLEI 158 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=3.4e-07 Score=90.36 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=75.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
..+.+.|++++|.+.++++++. .| +...+..++.+|.+.|++++|...++++.+.. +.+..++..++.++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445667777777777777663 33 46677777777777777777777777777642 33455677777777777777
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA--FHQGGDLGSVFELAA 632 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 632 (647)
++|+..++++++.. |.+..++..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK---------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS---------------------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777665 4445555555555 666677777777766
No 179
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.1e-06 Score=73.66 Aligned_cols=124 Identities=12% Similarity=-0.029 Sum_probs=83.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC---------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS---------------VVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
...+..++..+...|++++|+..|++++...+... ..++..+..++...|++++|...++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777778888888888888888876433211 256777777777778888888877777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 006396 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAW 188 (647)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (647)
. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456677777777777777887777777776652 335556666666665555554444
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=5.3e-06 Score=65.26 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHH
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ---ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-T---SATYNIL 524 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~~~l 524 (647)
..+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+. .| + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 445677889999999999999999864 3333 57888899999999999999999999984 33 3 6778899
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+.++...|++++|...++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999985
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.44 E-value=1.5e-06 Score=85.47 Aligned_cols=64 Identities=13% Similarity=-0.064 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|..+..+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++++..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 444455555555555555555555555432 2234455555555555555555555555555544
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=5.6e-07 Score=69.46 Aligned_cols=86 Identities=19% Similarity=0.048 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhh
Q 006396 460 KQWKLQEAVQLLEDMYVIG--VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 536 (647)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|...++++++. .| +...+..++.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 4688999999999999864 1334567889999999999999999999999984 44 58899999999999999999
Q ss_pred HHHHHHHHHHc
Q 006396 537 ADCLLVSLQEH 547 (647)
Q Consensus 537 A~~~~~~~~~~ 547 (647)
|...++++++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999985
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=2.2e-06 Score=70.81 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI-------GV----------TPDQITYNTIIRSFCKCKDLRKAFQLLNQMW 510 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 510 (647)
...+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888899999999999999999875 10 2234678889999999999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 511 LHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 511 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
+. .| +...|..++.+|...|++++|...|+++++. .|+..
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 84 45 5889999999999999999999999999985 45433
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.40 E-value=2.6e-06 Score=80.80 Aligned_cols=92 Identities=11% Similarity=-0.066 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...|..+..+|.+.|++++|+..++++++.. +.+...+..++.++...|++++|+..++++++..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~------------- 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA------------- 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 46788889999999999999999999999853 4456788899999999999999999999999887
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
|.+..++..+..++...|+.+++.+.
T Consensus 338 --------P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 --------PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899888888888777543
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=3.9e-05 Score=75.31 Aligned_cols=199 Identities=8% Similarity=-0.081 Sum_probs=131.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGP----------------THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQ- 483 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~- 483 (647)
.+...|++++|++.|..+.+..... ....+..+...|...|++++|.+.+..+.+.- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3445566666666666655432110 01235667777888888888888887766521 11111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCC--C
Q 006396 484 ---ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEH--NIS--L 551 (647)
Q Consensus 484 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--~ 551 (647)
.+.+.+...+...|+++.|..+++.... .+..+. ..++..++..|...|++++|..+++++... +.. +
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1233334444567888999888887764 222333 667888999999999999999999988752 111 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC--HHHHHHHHHHHHcCCCHHHHH
Q 006396 552 -TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD--QEICEVMLIAFHQGGDLGSVF 628 (647)
Q Consensus 552 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 628 (647)
...++...+..|...|++++|..+++++..... ..+.++. ...+..++..+...|++++|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN----------------SIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------HSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh----------------cCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 133778889999999999999999999875320 0011222 356777888888999999999
Q ss_pred HHHHHHHh
Q 006396 629 ELAAVMIK 636 (647)
Q Consensus 629 ~~~~~~~~ 636 (647)
..+.++.+
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877764
No 186
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.37 E-value=1.4e-05 Score=63.46 Aligned_cols=77 Identities=18% Similarity=0.045 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAM 573 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 573 (647)
++++|.++|++..+.| .|+.. |...|...+..++|.++|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555555544433 22222 4444444444444555555554432 33444444444444 44555555
Q ss_pred HHHHHHHHc
Q 006396 574 TFFCQMVEK 582 (647)
Q Consensus 574 ~~~~~~~~~ 582 (647)
.+|+++.+.
T Consensus 82 ~~~~~Aa~~ 90 (138)
T 1klx_A 82 QYYSKACGL 90 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 555555443
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.34 E-value=3.7e-07 Score=89.75 Aligned_cols=125 Identities=6% Similarity=-0.144 Sum_probs=80.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--------------VVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
....|..++..+.+.|++++|+..|++++...+... ..+|..+..+|.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777888888888888888888776433221 456666777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 006396 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAW 188 (647)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (647)
. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456666667777777777777777777776652 334555666666666666555544
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=5.7e-06 Score=68.19 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-PD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSA 519 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~ 519 (647)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666677777777777666543100 11 135667777788888888888888877651 1111 145
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEH----NISL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.+..++.++...|++++|...+++..+. +.++ ...++..++..+...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888899999999988888752 1111 1336778888899999999999999988764
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=3.1e-05 Score=77.82 Aligned_cols=174 Identities=9% Similarity=-0.032 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK----------LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK 497 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 497 (647)
..++|++.++.+...+ +-+...|+.-..++...|+ +++++..++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467788888888764 3455667766666666666 899999999999875 667888888888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 006396 498 --DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE-------- 566 (647)
Q Consensus 498 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 566 (647)
++++++.+++++++.+ +-+...|+.-..++...| .++++.+.++++++.+ +-|..+|.....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999843 336888988888888888 8999999999999864 55777888877777663
Q ss_pred ------CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 006396 567 ------GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGS 626 (647)
Q Consensus 567 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (647)
+.++++++++++++... |.+..+|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~---------------------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD---------------------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC---------------------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC---------------------CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999987 8889999999999999888554
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=1.1e-05 Score=64.15 Aligned_cols=96 Identities=13% Similarity=-0.077 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCChhhHHHHHHHHHHc-----
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-------------SATYNILIDGLCVNGDLKNADCLLVSLQEH----- 547 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 547 (647)
+......+...|++++|...|++.++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455566667777777777766662 222 338889999999999999999999999984
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 548 NISLTK-VAY----TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 548 ~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.|+. ..| ...+.++...|++++|+..|+++++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 115654 488 899999999999999999999998754
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=9.5e-05 Score=72.49 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCC--CC-CHHHHHHHHHHHh
Q 006396 460 KQWKLQEAVQLLEDMYVI----GVTPD-QITYNTIIRSFCKCKDLRKAFQLLNQMWL--HNL--EP-TSATYNILIDGLC 529 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~p-~~~~~~~l~~~~~ 529 (647)
..|+++++..+++..... +..+. ..++..+...|...|++++|..+++.+.. .+. .+ ....+..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555444321 11111 23444555555555555555555555443 111 11 1344555555555
Q ss_pred hcCChhhHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 530 VNGDLKNADCLLVSLQEH--NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
..|++++|..++++.... ....+ ...+..++..+...|++++|...|.++.
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555554421 01111 1233444444555555555555555544
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.28 E-value=6.6e-06 Score=81.18 Aligned_cols=119 Identities=9% Similarity=0.002 Sum_probs=93.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGD 533 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 533 (647)
...+.+.|++++|.+.++++.+.. +.+...+..+..+|.+.|++++|...++++++. .| +...+..++.+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 344567889999999999998864 556788899999999999999999999999984 45 58888999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKA--HCAEGDVHKAMTFFC 577 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 577 (647)
+++|.+.++++.+.. +.+...+..+..+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999853 3344566666666 888899999999988
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.20 E-value=5.6e-05 Score=75.94 Aligned_cols=155 Identities=8% Similarity=-0.047 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD----------LRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN 531 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 531 (647)
...++|++.++++++.. +.+..+|+.-..++...|+ +++++.+++.+++.+ +-+..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34578899999999864 5566778777777777776 999999999999842 33689999999999999
Q ss_pred C--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 532 G--DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG-DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 532 g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
| +++++.+.++++.+.+ +-|..+|..-..++...| .+++++++++++++.+ +.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---------------------p~n~ 178 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---------------------FSNY 178 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---------------------CCCH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------------------CCCc
Confidence 9 6799999999999975 567889999999999999 9999999999999987 8889
Q ss_pred HHHHHHHHHHHcC--------------CCHHHHHHHHHHHHhCCCC
Q 006396 609 EICEVMLIAFHQG--------------GDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 609 ~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~ 640 (647)
.+|...+.++.+. +.+++|.+.+++++..+|.
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 9999999888773 5679999999999986643
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.19 E-value=7.1e-05 Score=59.32 Aligned_cols=111 Identities=16% Similarity=0.054 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhH
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNA 537 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 537 (647)
+++++|...|++..+.| .++.. +...|...+.+++|.++|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46778888888888776 33333 6667777777888888888888754 66777788888877 7888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
..+|++..+.| +...+..+...|.. .+++++|+.+|+++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888764 56677788888887 788888888888888876
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=7.4e-06 Score=62.30 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...+..++..+...|++++|...++++++.. +.+...+..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT------------- 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 45667777888888888888888888888753 4466678888888888888888888888888765
Q ss_pred HhhhhCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 597 CMMLSNGFPPD------QEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 597 ~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
|.+ ...+..++.++...|++++|.+.+++
T Consensus 69 --------p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 69 --------STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp --------SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 444 66777777787777777776655443
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=1.5e-05 Score=61.06 Aligned_cols=81 Identities=14% Similarity=0.017 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
.|...++++++.. +.+...+..++.+|...|++++|...++++++.. +.+...|..++.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788887732 3357888888888999999999999999988853 4456688888888999999999999999888
Q ss_pred HcC
Q 006396 581 EKG 583 (647)
Q Consensus 581 ~~~ 583 (647)
+..
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 754
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=9.1e-06 Score=76.24 Aligned_cols=117 Identities=10% Similarity=-0.074 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
..+..+...+.+.|++++|...|++++. ..|+... +...|+++++...+. ..+|..++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 3455555566666666666666666665 2333221 122233333322111 13788899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+.|++++|+..++++++.. |.+..+|..++.+|...|++++|++.++++++.++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~---------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE---------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999987 778999999999999999999999999999886653
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=1.5e-05 Score=75.58 Aligned_cols=121 Identities=10% Similarity=-0.086 Sum_probs=81.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCC---------------CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKE---------------FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL 129 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 129 (647)
.+..++..+.+.|++++|+..|++++... .+.+..+|..+..++.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46778888899999999999998887510 11234466777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006396 130 HPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187 (647)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (647)
+.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777776652 23455555555555555444443
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=2.8e-05 Score=56.42 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------- 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------
Confidence 35667777888888888888888888888753 4456678888888888888888888888888876
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCC
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGG 622 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (647)
|.+...+..++.++.+.|
T Consensus 74 --------p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 --------PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --------TTCHHHHHHHHHHHHHHC
T ss_pred --------CCCHHHHHHHHHHHHhcC
Confidence 667777877777776543
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=4.5e-06 Score=66.21 Aligned_cols=88 Identities=10% Similarity=-0.044 Sum_probs=69.2
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD----------VHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
.+.+++|.+.+++..+.+ +.+...|..+..++...|+ +++|+..|+++++.+
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----------------- 76 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----------------
Confidence 345667777777777643 4455566666666666655 569999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHhCCCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGG-----------DLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..+|..++.+|...| ++++|++.|+++++.+|.
T Consensus 77 ----P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 77 ----PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ----cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 788999999999999875 899999999999997654
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=6.3e-05 Score=73.55 Aligned_cols=132 Identities=7% Similarity=-0.055 Sum_probs=96.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLH---NLE---PT-SATYNILIDGLCVNGDLKNADCLLVSLQEH---NISLT----KVAYT 557 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~ 557 (647)
.+...|++++|+.++++.++. -+. |+ ..+++.|+.+|...|++++|..+++++++. -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778999999888887751 122 22 567889999999999999999999988741 12232 33788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.++..|...|++++|+.+++++++.. ......+-|........+..++...|++++|...+.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~-------------~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAIL-------------LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-------------HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988521 0000001112245667888999999999999999999875
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.00 E-value=3.4e-05 Score=57.16 Aligned_cols=66 Identities=17% Similarity=0.052 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...+..++.+|...|++++|+..|+++++.+ +.+...|..++.++...|++++|+..++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 57778888888888888888888888888853 4456688888888888888888888888887643
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.92 E-value=9.1e-05 Score=56.58 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 466 EAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+++..+++..+.. +.+...+..+..+|...|++++|...++++++.. +.+...|..++.+|...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678888888764 5678889999999999999999999999999842 3358889999999999999999999999998
Q ss_pred Hc
Q 006396 546 EH 547 (647)
Q Consensus 546 ~~ 547 (647)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 73
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=5.8e-05 Score=54.65 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=49.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIH 141 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (647)
+...+..++..+...|++++|+..|+++....+ .+..++..+..++.+.|++++|...|+++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344566666666777777777777776665432 245566666666667777777777776666553 334445555544
Q ss_pred HHH
Q 006396 142 GLC 144 (647)
Q Consensus 142 ~~~ 144 (647)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=1.9e-05 Score=62.58 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh----------hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhc
Q 006396 42 RHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRL----------QDAILFLQETAGKEFGPSVVSLNAIMSRYCKL 111 (647)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (647)
+.+++|++.++.++...| .++.+|..++.++...|++ ++|+..|++++...+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 456677777777776555 6667777777777776654 3777777777765433 455677777777665
Q ss_pred C-----------ChhhHHHHHHHHHhCCCCCCHHHHHH
Q 006396 112 G-----------FAEVAKGLFCLMLKYGLHPDAFSYNI 138 (647)
Q Consensus 112 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 138 (647)
| ++++|.+.|+++++. .|+...|..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 4 666777777776665 444444433
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.83 E-value=5.9e-05 Score=55.81 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
+.+...+..+..+|...|++++|...|+++++. .| +...|..++.+|...|++++|...+++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456778899999999999999999999999984 44 578899999999999999999999999986
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00011 Score=55.65 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (647)
+...+..++..+...|++++|+..++++++.. |.+..++..++.++.+.|++++|++.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---------------------PQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45678889999999999999999999999987 778999999999999999999999999
Q ss_pred HHHHhCCCC
Q 006396 632 AVMIKSGLL 640 (647)
Q Consensus 632 ~~~~~~~~~ 640 (647)
+++++.++.
T Consensus 62 ~~al~~~p~ 70 (111)
T 2l6j_A 62 QQGLRYTST 70 (111)
T ss_dssp HHHHTSCSS
T ss_pred HHHHHhCCC
Confidence 999987654
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=0.00014 Score=71.14 Aligned_cols=124 Identities=7% Similarity=-0.068 Sum_probs=84.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHH
Q 006396 458 LCKQWKLQEAVQLLEDMYVIG---VTP----DQITYNTIIRSFCKCKDLRKAFQLLNQMWL-----HN-LEPT-SATYNI 523 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~ 523 (647)
+...|++++|+.++++.++.. +.+ ...+++.|..+|...|++++|..++++.++ .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446778888888777766521 112 234677788888888888888888877664 12 1232 566788
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEH---NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
|+..|...|++++|+.+++++++. -+.|+ ..+...+..++...|.+++|...|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887741 12232 22455666777788888888888888875
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.73 E-value=5.3e-05 Score=55.99 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+..+...|++++|...++++.+.. +.+.. .+..++.++...|++++|+..|+++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666667777666666642 33445 66666666666777777777777766655
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.69 E-value=0.00038 Score=50.12 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++..+..+..++...++ .++|..+++++++.+ +.+......++..+...|++++|+..|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555543333 455555555555532 3334455555555555555555555555555544
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.68 E-value=2.2e-07 Score=86.08 Aligned_cols=449 Identities=12% Similarity=0.051 Sum_probs=233.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..++++.|.+.-+++ ..+..|..++.+.+..|+..+|++.|-++. |+..|..++....+.|++++-..
T Consensus 37 ~i~~ldRa~eyA~~~------n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~ 104 (624)
T 3lvg_A 37 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVK 104 (624)
T ss_dssp GGCCSTTTTTSSSSC------CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHH
T ss_pred hccccHHHHHHHHHh------CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHH
Confidence 444555554443322 456789999999999999999988774433 55578889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC-
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG- 198 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 198 (647)
.+..+.+. ..++.+=+.|+-+|++.++..+-.+.+ ..|+..-...+..-+...|.++.|.-+|..+....
T Consensus 105 yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak 175 (624)
T 3lvg_A 105 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR 175 (624)
T ss_dssp HHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred HHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH
Confidence 98877765 344555678899999998866543332 24666666777777777777777766665432211
Q ss_pred -------------------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHH
Q 006396 199 -------------------SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALG 259 (647)
Q Consensus 199 -------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 259 (647)
-..++.||..+-.+|...+++..|.-.--.+.- .+.-...++..|-..|.+++.+.
T Consensus 176 LAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIs 250 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELIT 250 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHH
Confidence 012455677777777777766665544333332 22233445556666777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC------CcccHHHHHHHHhhcCCHHHHHHHHH
Q 006396 260 LLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK-RISP------NSFAHGAILLGLCEKEMITEARMYFD 332 (647)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 332 (647)
+++.-... -......|+.|.-.|++- ++++..+.++..-.+ +++. ....|..++..|..-.+++.|....
T Consensus 251 LlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM- 327 (624)
T 3lvg_A 251 MLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM- 327 (624)
T ss_dssp THHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT-
T ss_pred HHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH-
Confidence 77665532 123455666666666654 233333333322111 1110 1122333333333333333322110
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 006396 333 SLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKL------ 406 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 406 (647)
... +++..-.....+...+..+.+---+.+.-.++. .+...+-++.++...=|...+.++|.+.-.
T Consensus 328 --i~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkp 399 (624)
T 3lvg_A 328 --MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 399 (624)
T ss_dssp --TSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTG
T ss_pred --HhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHH
Confidence 000 000000000001111111111111111111111 222233444444333344444444432110
Q ss_pred ----CCCCCCHHHHHHHHHHHHHcCCHHHHHH------------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 407 ----HGLEPSAVTYTTFMNAYCEEGNIQRLLA------------LLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 407 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
..-..+...-.++-..|....|++.-.. +-+++.++ +-...-..-...|.+.+++++++.+
T Consensus 400 YL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 400 YLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp GGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHH
Confidence 0012233444555666777777665432 22233332 2222233334446667777777654
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
.++ ...|.-.|.....+|+.+-|.++++-.++.| +..+|.+.+..|...=+++-+.++
T Consensus 477 ~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 477 CKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 321 1223333445556777777888887777644 456677777777666666666655
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.00072 Score=62.02 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cC--C---HHHHHHHHHHHHh
Q 006396 445 GPTHVTYTVVIKGLC--KQW---KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK---CK--D---LRKAFQLLNQMWL 511 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~---~~~A~~~~~~~~~ 511 (647)
+.+...|...+++.. ..+ ...+|..+|+++++.. |-....+..+..+|.. .+ . .......+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445555666555532 222 3466777777777653 2333444444444431 00 0 1111111111111
Q ss_pred C-CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 512 H-NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 512 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. ..+.++.++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1 113346666666655555667777777777766643 555555666666666677777777777666654
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.55 E-value=0.00061 Score=53.36 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 572 (647)
.+..+.+.|.+....+ .++..+...+..++++++ +.++++.+++...+.+ .| +...+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666554 356666667777777776 5557777777777653 24 344667777777777777777
Q ss_pred HHHHHHHHHcC
Q 006396 573 MTFFCQMVEKG 583 (647)
Q Consensus 573 ~~~~~~~~~~~ 583 (647)
+++++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 77777777765
No 214
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.38 E-value=0.002 Score=49.44 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHhhcCCh------hhHHHHHHHHHHcCCCCCHH-HHHHHH------HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDL------KNADCLLVSLQEHNISLTKV-AYTTII------KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
|.++|-..+....+.|++ +..+++|+++... ++|+.. .|...+ ..+...+|.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 688888888888888888 7888888888875 666532 121111 12234589999999999998754
Q ss_pred CcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 584 FEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
+.=..+|...+..-.++|+...|++++.+++..+++|.
T Consensus 91 ---------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 ---------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp ---------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred ---------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 11288999999999999999999999999999888763
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.32 E-value=0.018 Score=52.98 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHH--HHcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--CHHHHH---HHHHHHH
Q 006396 410 EPSAVTYTTFMNAY--CEEGN---IQRLLALLQEMETKAIGPT-HVTYTVVIKGLCK---QW--KLQEAV---QLLEDMY 475 (647)
Q Consensus 410 ~~~~~~~~~l~~~~--~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g--~~~~a~---~~~~~~~ 475 (647)
+.+...|...+++. ...++ ..+|..+|++..+. .|+ ...+..+..++.. .+ ...... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 55666666666553 33333 57899999999886 454 4555554444431 11 111111 1222211
Q ss_pred H-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 476 V-IGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 476 ~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
. ..-+.+..++..+...+...|++++|...+++++.. .|+...|..+..++...|++++|.+.+.++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 1 122567788888877777789999999999999994 48888888999999999999999999999998 467777
Q ss_pred HHHHH
Q 006396 555 AYTTI 559 (647)
Q Consensus 555 ~~~~l 559 (647)
+|...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65443
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.32 E-value=0.00068 Score=49.82 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE-ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+..+...|++++|+..++++++.. |.+.. .+..++.++...|++++|.+.++++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE---------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC---------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677889999999999999999987 77788 999999999999999999999999998
Q ss_pred CCCC
Q 006396 637 SGLL 640 (647)
Q Consensus 637 ~~~~ 640 (647)
.++.
T Consensus 64 ~~p~ 67 (99)
T 2kc7_A 64 LNPD 67 (99)
T ss_dssp HCTT
T ss_pred cCCC
Confidence 7654
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00089 Score=64.31 Aligned_cols=94 Identities=5% Similarity=-0.192 Sum_probs=68.2
Q ss_pred hcCChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhC
Q 006396 530 VNGDLKNADCLLVSLQEH---NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSN 602 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (647)
..|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++.. ......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~-------------~~~lG~ 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY-------------SKHYPV 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHSCS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-------------HHHcCC
Confidence 457888888888887752 12232 2378889999999999999999999987521 000000
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 603 GFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.-|.....++.|+.+|...|++++|..+++++++
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 0122256789999999999999999999999874
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.24 E-value=0.00066 Score=50.38 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
.+..-+..++..+...|+++.|..+++.+++..-... .+-.+...++..++.++.+.|++++|...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------------ISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--------------CCcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3556677889999999999999999999886420000 00135578999999999999999999999
Q ss_pred HHHHHhCCCC
Q 006396 631 AAVMIKSGLL 640 (647)
Q Consensus 631 ~~~~~~~~~~ 640 (647)
++++++..|.
T Consensus 69 ~~~al~l~P~ 78 (104)
T 2v5f_A 69 TKKLLELDPE 78 (104)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999986654
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.16 E-value=0.0013 Score=57.64 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC
Q 006396 534 LKNADCLLVSLQEHNISLT---KVAYTTIIKAHCAE-----GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (647)
...|...++++++ +.|+ ...|..++..|... |+.++|.+.|+++++.+ |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---------------------P 235 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---------------------S 235 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---------------------C
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---------------------C
Confidence 5678888888888 4565 55788888888884 99999999999999987 4
Q ss_pred C-CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC--CCCC
Q 006396 606 P-DQEICEVMLIAFHQG-GDLGSVFELAAVMIKSGLL--PDKF 644 (647)
Q Consensus 606 ~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--~~~~ 644 (647)
. +..++..+++.+++. |+.++|.+.++++++.++. |+..
T Consensus 236 ~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 236 AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 3 488999999999885 9999999999999998887 7654
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.11 E-value=0.0031 Score=60.69 Aligned_cols=99 Identities=8% Similarity=0.018 Sum_probs=72.4
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH---NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
+..+...|++++|+.+++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++.. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~-------------~ 360 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY-------------R 360 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------H
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH-------------H
Confidence 34455778999999999998853 12233 2378889999999999999999999987521 0
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
......-|.-...++.|+..|...|++++|..+++++++
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 000001122256788999999999999999999999874
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.08 E-value=0.0051 Score=44.14 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 480 TPDQITYNTIIRSFCKCKD---LRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
+.++..+..+..++...++ .++|..++++.++ ..| ++.....++..+...|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677888888888865554 7999999999999 456 58889999999999999999999999999854
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.08 E-value=1.2e-06 Score=81.21 Aligned_cols=233 Identities=9% Similarity=0.047 Sum_probs=141.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
.+.+|..++.+..+.|...+|+.-|=+ ..|+..|..++.+..+.|.+++-...+.-..+. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 455799999999999999888766532 234556888999999999999999988877665 334455568999
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+ .-|..|..++...|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHH
Confidence 9999998776544432 466667777888888888888777666533 223444445555565555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 006396 257 ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM 336 (647)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 336 (647)
|.+.-++ ..++.||-.+..+|...+.+.-|.-.--.++- .+..+..++..|-..|.+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5443222 12455666666666666665544332222221 111222334445555666665555555543
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 337 SNCIQDVVLYNIMIDGYVKLGNIGEAVQLY 366 (647)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 366 (647)
.. ......|+-|.-.|++- .+++..+.+
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 22 23455555555555544 344444443
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.06 E-value=0.0035 Score=60.24 Aligned_cols=87 Identities=5% Similarity=-0.077 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCC---C-HHHHHHHH
Q 006396 495 KCKDLRKAFQLLNQMWL---HNLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH---NISL---T-KVAYTTII 560 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~-~~~~~~l~ 560 (647)
..|++++|+.++++.++ .-+.|+ ..+++.|+.+|...|++++|+.+++++++. -+.| + ..+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677888887777665 112222 567788888888889999998888887741 1222 2 23788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006396 561 KAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0084 Score=46.97 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCChhhH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK---DLRKAFQLLNQMWLHNLEP--TSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 537 (647)
....+.+-|.+..+.+ +++..+...+..++.+.+ +++++..+++...+.+ .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4556677777777766 578888888999999988 6779999999999853 35 467778888999999999999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 006396 538 DCLLVSLQEHNISLTKV 554 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~ 554 (647)
.+.++++++ +.|+..
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 999999999 456543
No 225
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.96 E-value=0.0089 Score=57.52 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLH---NLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH---NISLT----KVA 555 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~ 555 (647)
+..+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678999999999888862 12232 567888999999999999999999988741 12232 337
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
++.++..|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999875
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.92 E-value=0.012 Score=43.46 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHN------ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.-...++..+...|+++.|..+++.+.+.. -.+...++..++.++.+.|++++|+.+++++++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 334456666666777777777776666421 01234466677777777777777777777777655
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.85 E-value=0.0076 Score=45.26 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN---ADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 570 (647)
...+..+.+.|.+....| .|+..+--.+.+++.++.+... ++.+++.+...+ .| .......++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344445555555544433 2455555555566666555444 555555555432 12 2224455556666666666
Q ss_pred HHHHHHHHHHHcC
Q 006396 571 KAMTFFCQMVEKG 583 (647)
Q Consensus 571 ~A~~~~~~~~~~~ 583 (647)
+|+++++.+++..
T Consensus 92 ~A~~~~~~lL~~e 104 (126)
T 1nzn_A 92 KALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666554
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.76 E-value=0.0045 Score=54.28 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHhhcCCCCc-CHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHH
Q 006396 78 RLQDAILFLQETAGKEFGP-SVVSLNAIMSRYCK-----LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIA-GSME 150 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 150 (647)
...+|..+++++++..+.- +...|..++..|.+ .|+.++|.+.|+++++.+...+..++......+++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3466777777777654321 24567777777777 378888888888888764212366666777777764 7788
Q ss_pred HHHHHHHHHhhCCCC--CChhhHHHHH
Q 006396 151 EALEFTNDMGRHGVE--PDAITYSILA 175 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~--~~~~~~~~l~ 175 (647)
++.+.+++.....+. |+....+.+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 888888888776544 5544444443
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.064 Score=57.26 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..++..+.+.|.++.|..+.++-. .-.......|++++|.++.+. -.+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 444555555666666554442110 001223445666666665432 23556666666667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
++++.|.++|.++.. |..+...|...|+.+...++.+.+...|. +.....++...|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777776666532 11233333334555544444444443321 122233344455555555555
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCC--CHHHHHHHHHHHHcCCCHHHH
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPP--DQEICEVMLIAFHQGGDLGSV 627 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 627 (647)
.++-+.. ....+.+.++.+. -......+...+...|+.+.|
T Consensus 760 ~~~~~~~----------~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 760 IKSQRFS----------EAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHTTCHH----------HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHcCChH----------HHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 4432211 1111122222122 125666666777777775444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.58 E-value=0.017 Score=44.42 Aligned_cols=105 Identities=11% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCcccHHHHHHHHHhcCCh------hHHHHHHHHhhcCCCCcCHH-hHHHHHH------HHHhcCChhhHHHHHHHHHh
Q 006396 60 PRNVYTNSIVIDGLCQQSRL------QDAILFLQETAGKEFGPSVV-SLNAIMS------RYCKLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~g~~~~a~~~~~~~~~ 126 (647)
|.|+++|-..+...-+.|++ ++.+++|+++...- +|+.. .|...+. .+...+++++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 36677777777777777877 77778888776542 23211 1111111 11234677788888877765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006396 127 YGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEP 166 (647)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 166 (647)
.+ +.-+..|......-.++|+...|.+++......+.+|
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 43 3336666666666677788888888877777765444
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.086 Score=42.47 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=78.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
......|+++.|.++.+.+ .+...|..|.......|+++-|+++|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3446789999999987765 5788999999999999999999999998643 224445566778888
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
.-.++-+.....| -++....++...|+++++++++.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 8777776666654 2445556677889999999998654
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.13 Score=54.80 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=100.6
Q ss_pred hHHHhcCChhhHHH-HHHHHH-hCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 4 FVYSRTGMVHDAVF-VIAKMK-ELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 4 ~~~~~~g~~~~A~~-~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
......|++++|.. ++..+. .. ........+.+.|.++.|.+..+... .-.......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~----~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKD----SLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHH----HHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCchH----HHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 34556788998876 542211 11 11223334447888888887653211 12345678899999
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
|.++.+.+ .+...|..++..+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99886543 3677899999999999999999999998753 44555666667887776666666554
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 162 HGVEPDAITYSILAKGFHLLSQISGAWKVIQKL 194 (647)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (647)
.| -++....++.+.|++++|.+++.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 43 2344445566677777777766554
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.15 E-value=0.078 Score=39.85 Aligned_cols=91 Identities=10% Similarity=0.000 Sum_probs=68.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCC
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK---AFQLLNQMWLHNLEP--TSATYNILIDGLCVNGD 533 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 533 (647)
........+.+-+......| .++..+-..+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 33344556666666666656 4788887788889988887665 999999988753 34 35666778889999999
Q ss_pred hhhHHHHHHHHHHcCCCCCH
Q 006396 534 LKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~ 553 (647)
+++|.+.++.+++. .|+.
T Consensus 90 Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 90 YEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHHh--CCCC
Confidence 99999999999994 5643
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.31 Score=39.29 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=50.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
.+|+++.|.++.+.+ .+...|..++...+.+|+++-|...|.+.-. +..+.-.|.-.|+.+.-..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 556666666655543 3444566666666666666666666665432 2333333444555555554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
+-+.....| -++.....+...|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444444332 1233333344456666666555433
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.89 E-value=0.38 Score=36.22 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
+|++......+-.+ ..+...++.-++.+..+|+-++-.+++..+... .+|++.....++.+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 44444444444332 223444555556666666666666666664432 355666666666666666666666666
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
+.++.+.|
T Consensus 148 l~~AC~kG 155 (172)
T 1wy6_A 148 LIEACKKG 155 (172)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 66666665
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.31 E-value=0.54 Score=36.00 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhcCCh---hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 515 EPTSATYNILIDGLCVNGDL---KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.|+..+--.+.+++.++.+. .+++.+++.+...+..-.......++-++.+.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34444444445555554432 2344555555543211122244445555555555555555555555543
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.30 E-value=0.65 Score=34.99 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (647)
+.-.|..++..++..+.... .+..-+|-++.-....-+-+-..++++.+-+. -| ....|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 34467788888888777653 35555666666566666666666666655432 11 1234555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
...+-.+ ..+.......+......|..+.-.+++..++.. .+|++.....+..+|.+.|+..+|.+++.++-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5544332 335556677778888999999999999997553 5788999999999999999999999999999998
Q ss_pred CCC
Q 006396 548 NIS 550 (647)
Q Consensus 548 ~~~ 550 (647)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 864
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.09 E-value=0.18 Score=38.03 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+.+..++-++.+.|++++|++..+.+++
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=3.5 Score=39.71 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HH
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEPT--SA 519 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~--~~ 519 (647)
...|...+...|++.+|..++..+...-. ..+ ...+...++.|...+|+.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 34567777888888888888888764211 122 23566677788888999999888887642 212222 34
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556677777888889888888877764
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.43 E-value=0.1 Score=41.22 Aligned_cols=124 Identities=9% Similarity=0.004 Sum_probs=71.8
Q ss_pred CCCCCHHHH--HHHHHHHhhcCChhhHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 513 NLEPTSATY--NILIDGLCVNGDLKNADCLLVSLQEH-NISLT-------KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 513 ~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
|+.|....| ..-++.+...|.++.|+-+...+... +..|+ ..++..++.++...|++..|...|+++++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444543333 33456667788888888877775531 11222 126678889999999999999999998653
Q ss_pred CC--cccchhhhhH--HHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 583 GF--EISIRDYTKS--FFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 583 ~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.- .-........ --........+.+.+.-..++.+|.+.|++++|+.+++.+..
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 21 1000000000 000000112345678888899999999999999999987653
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.27 Score=50.37 Aligned_cols=54 Identities=11% Similarity=-0.057 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
..|...|+++-|+.+.++++... |.+..+|..|+.+|...|+++.|+-.+..++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a---------------------PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA---------------------LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC---------------------chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34555677777777777777665 5667777777777777777777776666653
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.35 E-value=4.9 Score=40.48 Aligned_cols=117 Identities=11% Similarity=0.035 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 497 KDLRKAFQLLNQMWLH-NLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (647)
.+.+.|...+...... .+.+. ...+..++......+...++...+.+.... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 3667777777666542 22221 112222232333334344555555554432 233333444444445567777777
Q ss_pred HHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 574 TFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..|+.+-... ........-+++++.+.|+.++|..+++.+.+
T Consensus 306 ~~~~~l~~~~---------------------~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA---------------------KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG---------------------GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc---------------------cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776664321 12344455566677777777777777766543
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.26 Score=50.51 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
+.|...|+++.|+.+.+++... .|.+..+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344556666666666666653 2334556666666666666666666665554
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.05 E-value=0.29 Score=46.28 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
+...++.++...|++++|+..++.++... |-+...|..++.+|.+.|+..+|++.|+++
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---------------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---------------------PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667788899999999999999999887 788999999999999999999999999886
Q ss_pred H-----hCCCCCCCC
Q 006396 635 I-----KSGLLPDKF 644 (647)
Q Consensus 635 ~-----~~~~~~~~~ 644 (647)
. +.|+.|...
T Consensus 232 r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 232 KTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHSCCCCHH
T ss_pred HHHHHHHhCCCCCHH
Confidence 5 358877653
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.83 E-value=1.7 Score=32.87 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHhhcCCh---hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 515 EPTSATYNILIDGLCVNGDL---KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.|++.+--.+.+++.++.+. .+++.+++.+.+.+..-....+..++-++.+.|++++|+++.+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45555555666666665543 3466666666654311123356666667777777777777777777654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.83 E-value=1.8 Score=34.28 Aligned_cols=124 Identities=8% Similarity=-0.014 Sum_probs=63.1
Q ss_pred CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 443 AIGPTHVTY--TVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQ-------ITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 443 ~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
|..|....| ..-++.+...|.++.|+-+.+.+.... ..|+. .++..+..++...|++.+|...|++++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444444433 333555667778888777766655421 12331 24556667777788888888888876641
Q ss_pred -CCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 513 -NLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 513 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..-+ +......+. ....... ......+...-..+..+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111 111111110 0000000 0112334456677889999999999999998865
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=10 Score=36.48 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHhhcCChhhHHHHHHHHHH----cCCCCC--HH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWL--HNLEPT---SATYNILIDGLCVNGDLKNADCLLVSLQE----HNISLT--KV 554 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~ 554 (647)
...|...|...|++.+|..++..+.. .+..+. ...+..-++.|...+++..|..+++++.. ...+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45678889999999999999999875 333222 45677788999999999999999998752 211222 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...+..+...+++.+|...|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456777888889999999988888865
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.40 E-value=3.6 Score=45.45 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-C--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLH-NLEP-T--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTI 559 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 559 (647)
.-|..++..+.+.+.++.+.++...+++. +..+ + ...|..++..+...|++++|...+..+.... --...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 34667778888888888888888887763 1111 1 2367888899999999999999888887643 335567777
Q ss_pred HHHHHhcCCHHH
Q 006396 560 IKAHCAEGDVHK 571 (647)
Q Consensus 560 ~~~~~~~g~~~~ 571 (647)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777766544
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.07 E-value=4.2 Score=44.94 Aligned_cols=52 Identities=12% Similarity=0.009 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLM 124 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 124 (647)
.++..+...|.++-+.++..... .++..-..++.++...|++++|.+.|+++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555666677766665544332 23444456666777777777777777665
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.05 E-value=4.2 Score=31.17 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 479 VTPDQITYNTIIRSFCKCKD---LRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
-.|+..+--.+..++.++.+ ..+++.+++.+...+..-.......|.-++.+.|++++|.+..+.+++ ..|+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 35777777777888887765 557899999988843222466677888899999999999999999999 467544
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=90.92 E-value=10 Score=35.45 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=14.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTI 404 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (647)
....+...|.+.|+.++...++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555666666666666555544
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.85 E-value=18 Score=38.15 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=125.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C-----CCcccHHHHHHH
Q 006396 247 SMCKSGRIDEALGLLYEMEAVGLKPDL--VTYSILIRGLCKQDKVHKAIQLYNEMCSKRI--S-----PNSFAHGAILLG 317 (647)
Q Consensus 247 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~ 317 (647)
+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455677888887777765542101122 2222333344555655567777766654311 0 001111222222
Q ss_pred H--hhcCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH--HHHHHhc
Q 006396 318 L--CEKEMITEARMYFDSLIMSNCIQDVV--LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL--IYGFCKN 391 (647)
Q Consensus 318 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 391 (647)
+ .-.++ +++.+.+..+..... .... .--++...+.-.|+.+....++..+.+.. +..+...+ .-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 2 22333 344555555544321 1111 11123334456677777777777666531 22222223 3344467
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 392 GKVADARRLLDTIKLHGLEPSAVTY--TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
|+.+.+..+.+.+.... .|....- .++.-+|+..|+......++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888777631 2322222 233456677888877777888877642 1222222223333444566665666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 006396 470 LLEDMYVIGVTPDQITYNTIIRSFCKCKDL-RKAFQLLNQMWL 511 (647)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~ 511 (647)
+++.+.+.+ .|....-..+.-+....|+. .++...+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665554432 33333222222333333332 567777777764
No 253
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.52 E-value=16 Score=36.85 Aligned_cols=165 Identities=7% Similarity=-0.008 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITY----NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
.+.+.|...+....+.. ..+.... ..+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998887543 2333322 22222333445345566666665542 23433344444445567999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC--C-----CC---
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF--P-----PD--- 607 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~--- 607 (647)
...|..|.... .........+++++...|+.++|..+|+.+... .+|+..+.......+. + +.
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~ 377 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAAQRIGEEYELKIDKAPQNVDS 377 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHHHHTTCCCCCCCCCCCSCCCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHHHHcCCCCCCCCCCCChhHHh
Confidence 99998886531 223445667788888999999999999998752 2455433332222221 1 10
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 ---QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
...-...+..+...|....|...+..+.+
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 01123445678888999999888777665
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.00 E-value=5.8 Score=37.36 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|++.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677778888888888888887753 55677888888888888888888888887754
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.98 E-value=22 Score=37.62 Aligned_cols=258 Identities=10% Similarity=0.050 Sum_probs=138.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCccchHHHHH
Q 006396 316 LGLCEKEMITEARMYFDSLIMSNCIQDVV--LYNIMIDGYVKLGNIGEAVQLYRQLIEKRI-------SPSIVTFNSLIY 386 (647)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 386 (647)
.+.+..++.+++..+++.....+...+.. .-..+.-.....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556777777877776655421112222 222333344556665677777777665311 001111122222
Q ss_pred HH--HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHh
Q 006396 387 GF--CKNGKVADARRLLDTIKLHGLEPSAV--TYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK--GLCK 460 (647)
Q Consensus 387 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 460 (647)
+. .-.++ +++...+..+.... .+... .-.++...+...|+.+....++..+.+.. +......+.. ++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 22 33344 34555555555431 11111 12233344556778887888888776642 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQIT--YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
.|+.+.+..+++.+.... .|.... ...+.-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888877631 222221 123455678899988888899988863 2233444444445555677877788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCAEGDV-HKAMTFFCQMVE 581 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 581 (647)
+++..+.+.+ .|....-..++-+....|.. .++++.+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 8877666543 33333223333344444444 578888888864
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.09 E-value=2.4 Score=30.00 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
|.=+..+-++.+...++-|++.+..+.+++|.+.+++..|.++++.+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666655556666666666666666666666666666666543
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.83 E-value=13 Score=33.61 Aligned_cols=80 Identities=6% Similarity=0.006 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHH-HHHHHHHcCCCHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICE-VMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~ 630 (647)
++.....++..|.+.|++.+|...|= .+-.++...+..++.+.....+ +.+...|. ..+--|.-.|+...|..+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~ 209 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTA 209 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45566666777777777777766652 2323334455555665555544 44444433 233445566788889887
Q ss_pred HHHHHh
Q 006396 631 AAVMIK 636 (647)
Q Consensus 631 ~~~~~~ 636 (647)
+....+
T Consensus 210 ~~~f~~ 215 (336)
T 3lpz_A 210 YRIFTS 215 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.74 E-value=5.8 Score=28.13 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
+.=+..+-+..+....+-|++.+..+.+.+|.+.+|+..|.++++-+... ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455555666666666777777777777777777777777777776652 122234454444
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=86.34 E-value=6.1 Score=32.47 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=39.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++...++..+|.-|...|+-.... .|...+..+...|++++|..+|+..++.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444667888888888777655544 66777788888888888888888887766
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.74 E-value=23 Score=33.12 Aligned_cols=167 Identities=12% Similarity=0.021 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC---CccchHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKR-ISP---SIVTFNSLIYGFCKN-GKVADARRLLDTIKLHGLEPSAVTY- 416 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 416 (647)
......+...|.+.|+.++..+++.....-= .-| .......++..+... +..+.-.++.....+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567788999999999999999988764320 001 122345666666553 33344444444433311 0111122
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHH
Q 006396 417 -----TTFMNAYCEEGNIQRLLALLQEMETK--AIGPT---HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI--GVTPDQI 484 (647)
Q Consensus 417 -----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 484 (647)
..++..|...|++.+|..++..+.+. ..... ...+..-++.|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25667777888888887777776652 11111 123444556667777777777777766542 2223333
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHHHH
Q 006396 485 TYNT----IIRSFC-KCKDLRKAFQLLNQMW 510 (647)
Q Consensus 485 ~~~~----l~~~~~-~~~~~~~A~~~~~~~~ 510 (647)
.... -...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3211 122344 5777777777776654
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.57 E-value=17 Score=31.51 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=73.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
...+.|++++|+.....-++.. +-|...-..|++.+|-.|+++.|.+-++.+.+. .|+...-..+.+-..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH------
Confidence 3457788888888888877742 346777778888888888888888888888773 4543322222111111
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFH--QGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 637 (647)
|...-.....-+-.|.. +.....-...++.++. ..|+.++|.+.-..+.+.
T Consensus 77 aE~~R~~vfaG~~~P~~---------------~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKV---------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHTTSCCCEEC---------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC---------------CCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333332222220 1122334445555555 459999999999988764
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.51 E-value=7.5 Score=31.96 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=61.6
Q ss_pred HHHHHHHHc-----CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHH
Q 006396 469 QLLEDMYVI-----GVTPDQITYNTIIRSFCK--CKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 469 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
.++++.... ....|+.-....+..-.. +++..++..+|..|...|+-.. ..-|......+...|++++|..+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666552 234565544433332222 5668899999999999776654 77788888999999999999999
Q ss_pred HHHHHHcCCCCC
Q 006396 541 LVSLQEHNISLT 552 (647)
Q Consensus 541 ~~~~~~~~~~~~ 552 (647)
|+.-++.+-.|-
T Consensus 138 y~~GI~~~A~P~ 149 (202)
T 3esl_A 138 LELGAENNCRPY 149 (202)
T ss_dssp HHHHHHTTCBSH
T ss_pred HHHHHHcCCccH
Confidence 999999887773
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.92 E-value=11 Score=28.50 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
|.=+..+-++.+...++-|++.+..+.+++|.+.+|+..|.++++-+..+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 33445555666666667777777777777777777777777777777654 233334454443
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.54 E-value=5.8 Score=29.85 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+..+-++.+...++.|++.+....+++|.+.+|+.-|+++++-...+-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455566666677789999999999999999999999999999998764
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.37 E-value=6.3 Score=37.77 Aligned_cols=98 Identities=7% Similarity=-0.072 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHH----
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLH--NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH-NISLTKVAYT---- 557 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~---- 557 (647)
+...+...|.+.|+++.|.+.+.++... +...-...+...++.+...+++..+...+.++... .-.++.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777777888888888888777762 22233666777777777778888887777776542 0112222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.-+..+...+++..|...|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2223344567777777777666543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.92 E-value=3.5 Score=35.74 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
....+.|+.++|+.....-++.. |.|...-..+...|+-.|+|+.|..-++.+.+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---------------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 45678899999999999999988 88999999999999999999999999999888664
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.79 E-value=12 Score=29.17 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 537 ADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.++|.-|...|+-.... .|...+..+...|++++|..+|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 555555555544433322 34445555555555555555555555444
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.63 E-value=15 Score=28.60 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 479 VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
...|+.-...-+..-..+. ++..+|..|...|+-.. ..-|......+...|++++|.++|+.-++.+-.|-..
T Consensus 64 YknD~RyLklWl~ya~~~~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNS---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBS---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3456655444444333333 38899999999877664 7778888889999999999999999999988777443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.32 E-value=14 Score=35.34 Aligned_cols=63 Identities=11% Similarity=-0.110 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcC--CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGK--EFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 126 (647)
.++..++..+.+.|++++|.+.|.++... +...-...+...++.+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35666777777777777777777776542 2222344666667777777777777777666643
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.93 E-value=39 Score=30.35 Aligned_cols=121 Identities=8% Similarity=-0.004 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCChh-hHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 512 HNLEPTSATYNILIDGLCVNGDLK-NADCLLVSLQE----HN--ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGF 584 (647)
Q Consensus 512 ~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 584 (647)
.+.+++......++..+.....-+ .=.++++++++ .| ..-++..+..++..|.+.|++.+|...|-...
T Consensus 86 ~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---- 161 (312)
T 2wpv_A 86 AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---- 161 (312)
T ss_dssp TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----
Confidence 445555555555555554422111 12333333331 11 11245566667777777777777766553110
Q ss_pred cccchhhhhHHHHhhhhC--CCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHh
Q 006396 585 EISIRDYTKSFFCMMLSN--GFPPDQEICEV-MLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.-+...+..++.+..... +.+.+...+.. .+--|.-.|+...|..++....+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 002233444444444443 44444444322 22344467888999888887653
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=77.60 E-value=16 Score=25.78 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=23.8
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 128 (647)
.+.++|+|++|..+.+... .||...|..+. -.+.|-.+.+...+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 3455555555554443222 34444443332 235555555555554444443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.99 E-value=17 Score=25.69 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=21.1
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
+.++|+|++|..+.+... .||...|..+. -.+.|-.+.+...+.++...
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 445555555554443322 34444443332 22444444444444444433
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=76.39 E-value=22 Score=28.13 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++..+|..|...|+-.... .|...+..+...|++.+|..+|+..++.+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3556666666666544433 55666666666777777777777776665
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.53 E-value=9.9 Score=26.77 Aligned_cols=80 Identities=20% Similarity=0.116 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (647)
....++|..+-+.+...+. ...+-..-+..+.+.|++++|..+.+... .||...|..+... +.|.-+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 4556777777777766542 11122222345667888888877666543 6777777766543 66777777777
Q ss_pred HHHHHhCC
Q 006396 296 YNEMCSKR 303 (647)
Q Consensus 296 ~~~~~~~~ 303 (647)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 77776665
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.85 E-value=8.8 Score=30.41 Aligned_cols=53 Identities=6% Similarity=0.072 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP-PDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
+.+.++|..|...+ +. .-...|...+..+...|++.+|.++++.-++.+..|-
T Consensus 77 ~~p~~if~~L~~~~--------------------IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQG--------------------IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTT--------------------SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCC--------------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 33667788887776 33 3477888999999999999999999999999988874
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.25 E-value=24 Score=24.92 Aligned_cols=79 Identities=14% Similarity=-0.094 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 77 SRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFT 156 (647)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (647)
...++|..+.+.....+. ...+-..-+.++..+|+|++|..+.+... .||...|.+|.. .+.|-.+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 355666666666555321 22222223335667777777777665443 677776666544 3566666666666
Q ss_pred HHHhhCC
Q 006396 157 NDMGRHG 163 (647)
Q Consensus 157 ~~~~~~~ 163 (647)
..+..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665554
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.20 E-value=58 Score=29.23 Aligned_cols=82 Identities=11% Similarity=-0.057 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc---CChhhHHHHHHHHHHcCCCCCHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN---GDLKNADCLLVSLQEHNISLTKVAYT 557 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 557 (647)
-++.....+...|.+.|++.+|+..|-.. -.-+...+..++.-+... |...++--++ .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~---------------~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFF---------------S 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH---------------H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHHH---------------H
Confidence 46677778888888888888887766421 111344444444433333 3333322211 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..+--|...|+...|..++....+
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 223345567888888888887654
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.60 E-value=27 Score=29.32 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 006396 535 KNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFE 585 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 585 (647)
+++..+|.-|...|+-.... .|...+..+...|++++|..+|+..++.+..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 46667777777776655433 5667777777778888888888877776633
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.41 E-value=13 Score=31.24 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
+++..+|.-|...+ +.. -...|...+..+...|++.+|.++|+.-++.+..|
T Consensus 131 ~~p~~if~~L~~~~--------------------IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHH--------------------IGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTT--------------------CSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCC--------------------cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46667888777776 443 47788899999999999999999999999888777
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=63.27 E-value=63 Score=26.71 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=8.1
Q ss_pred CHHhHHHHHHHHHhcCC
Q 006396 97 SVVSLNAIMSRYCKLGF 113 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~ 113 (647)
+...-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444555544
No 281
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=63.16 E-value=85 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLI 370 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~ 370 (647)
+..-+...|.++.|.+++++-+
T Consensus 34 laadhvAAGsFetAm~lLnrQv 55 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQV 55 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHh
Confidence 3444566777777777776654
No 282
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=59.73 E-value=23 Score=28.06 Aligned_cols=98 Identities=17% Similarity=0.060 Sum_probs=57.9
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc--ccchhhhhHHHHhhhhCCCC
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFE--ISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 605 (647)
+.-.|++..++-++... + +..+..--.-++.+..++.+|+..++.++.-.+. |+++.-. .++... |
T Consensus 43 LyyngEY~R~Lf~L~~l---N---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~---~~ffvd---~ 110 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKL---N---TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI---QEMFVD---P 110 (242)
T ss_dssp HHHTTCHHHHHHHHHTC---C---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH---HTTSCC---T
T ss_pred hhhcchHhHHHHHHHhc---c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc---ceeeec---c
Confidence 34467777666655332 1 1111222223666778888888888888854433 3332221 111111 3
Q ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 606 PDQ-EICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 606 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.|. -.+..++..|.+.|+.+||+..+......
T Consensus 111 ~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 111 GDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 444 45667889999999999999998876543
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.29 E-value=81 Score=26.02 Aligned_cols=154 Identities=16% Similarity=0.034 Sum_probs=79.9
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
++...-...+..+...|.. ++...+..+.. .++..+-...+.++.+.|+.+.. ..+..++. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 4444445555566666653 34444444443 24666666777777777765433 33334443 45666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (647)
.++.+.++.+ +...+..+.+ .++...-...+.++...+..+ +...+..+.. .++...-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7776666643 3333444432 345555556666666665543 3333333332 2344444555555555554 3
Q ss_pred HHHHHHHHHHh
Q 006396 221 EGLKLREVMLS 231 (647)
Q Consensus 221 ~a~~~~~~~~~ 231 (647)
.+...+..+.+
T Consensus 174 ~~~~~L~~~l~ 184 (211)
T 3ltm_A 174 RVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 34444444443
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=56.37 E-value=48 Score=26.32 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=35.2
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCC----------------cCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFG----------------PSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
++-+..++..|+..++.++...+. .|.+ .++.++..+.+.|+.++|...|..--..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 555666777777777666532222 1222 4566666777888888888887665543
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=55.88 E-value=1.8e+02 Score=29.54 Aligned_cols=81 Identities=12% Similarity=0.000 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 006396 383 SLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK-- 460 (647)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 460 (647)
....++.-.|+++.|...+-.. ...+...+...+.. .|-.... +.+......-....+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~---~gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLAS---LKLFKID----SSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHH---TTC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHH---cCCccCC----CcccccCCCcccccHHHHHHHHHHHh
Confidence 3556666788888888876643 13344444333332 2222210 111111000012335666766653
Q ss_pred -cCCHHHHHHHHHHH
Q 006396 461 -QWKLQEAVQLLEDM 474 (647)
Q Consensus 461 -~g~~~~a~~~~~~~ 474 (647)
..++.+|++.+--+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 56777777776655
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.97 E-value=60 Score=25.58 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=32.1
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHH------HHHhcCChhhHHHHHHHHHh
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMS------RYCKLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~g~~~~a~~~~~~~~~ 126 (647)
.++..|++-+|-++|+..-.....+ +...|..+|. ...+.|+...|..++.+...
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455577777777777765544344 3334444444 12345777777777766654
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.63 E-value=1.2e+02 Score=29.47 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLH-NLEPTS---ATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
..++.+++.|...+.++.|..+..+..-- ...++. .-+..++..+.-.+++.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666666677777777777766666421 001111 11223455556666676676666666543
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=51.47 E-value=1.4e+02 Score=27.06 Aligned_cols=83 Identities=8% Similarity=-0.000 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTI 559 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 559 (647)
.-|+.....+...|.+.+++.+|+..|- . |-.+.+..+..++.-+...+...++--+ ....
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlf---------------iaRa 193 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLY---------------CARA 193 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHH---------------HHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHH---------------HHHH
Confidence 3466777788888999999999888773 2 2333446665555444444332222222 1223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
+--|...++...|...+....+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3346667888888887766654
No 289
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=47.00 E-value=2e+02 Score=27.48 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=60.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
...+.+.|.++.. +.+.|..-..|..-...++.+|+|++|..+.....+. +-.++.+...+-..-...|+..--++
T Consensus 341 ~l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 341 VLQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp TTCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred ccCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 5567777777644 3455555555666677888899999998887776542 22355555444333334455555666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
+|..+++.| ..+..--..+++.-..+|+.+
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~ 446 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQ 446 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHH
Confidence 666666655 334332223333333444443
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.38 E-value=1.6e+02 Score=25.39 Aligned_cols=7 Identities=0% Similarity=-0.187 Sum_probs=2.8
Q ss_pred HhcCChh
Q 006396 109 CKLGFAE 115 (647)
Q Consensus 109 ~~~g~~~ 115 (647)
++.|+.+
T Consensus 13 ~~~g~~~ 19 (285)
T 1wdy_A 13 VQNEDVD 19 (285)
T ss_dssp HHTTCHH
T ss_pred HHcCCHH
Confidence 3344443
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.39 E-value=2.2e+02 Score=30.66 Aligned_cols=132 Identities=13% Similarity=0.021 Sum_probs=71.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG 147 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (647)
.++..+...|.++-|.++...+. .++..-...+.+|...|++++|.+.|+++. .|+..+......
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG---------
T ss_pred HHHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc---------
Confidence 35566667777776655443322 244444567777888888888888887754 222211100000
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcC
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV----TYTVLICGYCQIG 217 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 217 (647)
......++..... ......-|..++..+.+.+-++.+.++-+..+..-...|.. .|..+.++.+..|
T Consensus 880 -~~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011111111100 11123467888888888888888888888877653222222 4666666666544
No 292
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=37.14 E-value=1.4e+02 Score=23.46 Aligned_cols=70 Identities=9% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH
Q 006396 500 RKAFQLLNQMWL-HNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH--NISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 500 ~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
+.+.+-+.+.++ .|++++..= ..++..+...++.-.|.++++.+.+. +...+..|...-+..+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344444444333 566665433 24445556666777788888888776 54556666666666777666543
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=36.64 E-value=43 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=11.5
Q ss_pred HcCCCHHHHHHHHHHHH
Q 006396 619 HQGGDLGSVFELAAVMI 635 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~ 635 (647)
-+.|++++|...|...+
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 46777777777666554
No 294
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=36.30 E-value=2.3e+02 Score=27.51 Aligned_cols=73 Identities=16% Similarity=-0.028 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
|.....-...++.|..+|..+.. +.| +...|+.|+-.....|+.-+|.-.|-+.+.. ..|-..+...+...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 33344444556677777777766 334 3666777776666677766666666666654 2455556666555443
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=36.26 E-value=66 Score=25.46 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 103 AIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 103 ~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.++..+...+.+-.|.++++.+.+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3344444444444455555554443
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.29 E-value=2.7e+02 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.357 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 241 YSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 241 ~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4456667777777777777777754
No 297
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.05 E-value=46 Score=22.66 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=10.0
Q ss_pred cCCCHHHHHHHHHHHH
Q 006396 620 QGGDLGSVFELAAVMI 635 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~ 635 (647)
+.|++++|...|+..+
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 6677776666655544
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.53 E-value=2e+02 Score=23.89 Aligned_cols=10 Identities=10% Similarity=-0.164 Sum_probs=4.0
Q ss_pred HhcCCHHHHH
Q 006396 389 CKNGKVADAR 398 (647)
Q Consensus 389 ~~~~~~~~a~ 398 (647)
.+.|+.+-+.
T Consensus 218 ~~~~~~~~v~ 227 (240)
T 3eu9_A 218 KQRKNVWMIN 227 (240)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCcHHHHH
Confidence 3344444333
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.00 E-value=2.2e+02 Score=24.22 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQL 369 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (647)
+.......+..+.+.|+.+.|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444455566666666666665443
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.54 E-value=2.2e+02 Score=24.17 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYV 476 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~ 476 (647)
++.+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5566666777777777766554
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.70 E-value=1.2e+02 Score=26.08 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHH
Q 006396 355 KLGNIGEAVQLYR 367 (647)
Q Consensus 355 ~~~~~~~a~~~~~ 367 (647)
..|+.+-+..+++
T Consensus 234 ~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 234 KTGKIGIFQHIIR 246 (260)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444433
No 302
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.50 E-value=3.5e+02 Score=25.87 Aligned_cols=142 Identities=8% Similarity=0.001 Sum_probs=86.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
..+.+-|.++.. +.|++--...|..-.+.+...|++++|.++...... |+--++.|.+.+-.+=..-|+..--..+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 466776665543 346666666677777888888999998888766544 3445677776665555555666667777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc
Q 006396 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ 620 (647)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (647)
|..+.+.| +.+..--..+++.-...|+.+-..+++.+- .+....+.-..+ +
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~-----------------------KL~~SEeLGDlv-----k 468 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED-----------------------KLECSEELGDLV-----K 468 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----------------------CSCCCHHHHHHH-----H
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC-----------------------CccccHHhHhhh-----h
Confidence 77777765 455443344455555556555444443321 234444433333 4
Q ss_pred CCCHHHHHHHHHHHH
Q 006396 621 GGDLGSVFELAAVMI 635 (647)
Q Consensus 621 ~g~~~~A~~~~~~~~ 635 (647)
..+..-|+.+|.++-
T Consensus 469 ~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 469 SVDPTLALSVYLRAN 483 (494)
T ss_dssp HHCSHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHcC
Confidence 447788888887764
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.36 E-value=3.1e+02 Score=25.17 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhh
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETA 90 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~ 90 (647)
...++.-|+..|+..+|...++.+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3456777888889999988888764
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.64 E-value=2.3e+02 Score=30.48 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=31.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccC
Q 006396 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL----VTYSILIRGLCKQD 287 (647)
Q Consensus 240 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 287 (647)
-|..++..+-+.+.++.+.++-+...+.--..|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4667888888888888888888877764222222 25666666665543
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.45 E-value=2.1e+02 Score=22.91 Aligned_cols=187 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHccC
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVT--YSILIRGLCKQD 287 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 287 (647)
+...+..|+.+....++..-...--..+..-++.+..+..... .++++.+.+.|..++... -...+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 288 KVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYR 367 (647)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 367 (647)
+.+-+..+++..... +......-...+...+..+..+-+..+++.-...-...+..-.+.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKHATPD-LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHHSCCC-TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhccCcc-cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHHCCCCCCccchH--HHHHHHHhcCCHHHHHHHHH
Q 006396 368 QLIEKRISPSIVTFN--SLIYGFCKNGKVADARRLLD 402 (647)
Q Consensus 368 ~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~ 402 (647)
.+++.|..++..... ..+......|+.+-+.-+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 306
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.50 E-value=1e+02 Score=21.33 Aligned_cols=28 Identities=4% Similarity=-0.127 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
+..+...+..+.+.|+|++|++..+++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566778899999999999987666654
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.28 E-value=1.7e+02 Score=22.39 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC
Q 006396 80 QDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG 112 (647)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 112 (647)
-.|.++++.+.+.++..+..|.+..+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444443333334444444444444443
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.95 E-value=3.3e+02 Score=24.44 Aligned_cols=49 Identities=16% Similarity=-0.031 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhcCCCCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006396 80 QDAILFLQETAGKEFGPSV--VSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128 (647)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 128 (647)
.+..++-.-+.....+|.. -++...+....+.+++..|..+-+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444444444433 256677777778888888888888888764
No 309
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.76 E-value=2.4e+02 Score=22.74 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=22.6
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 96 PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (647)
++..+-...+.++...|..+.. ..+..+.. .++..+-...+.++.+.++.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 3444444555555555544332 22223332 34444444555555555543
No 310
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.69 E-value=97 Score=21.70 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=29.7
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH-----HhcCChhhHHHHHHHHHh
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY-----CKLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~a~~~~~~~~~ 126 (647)
.+...|++-+|-++++..-...+.+....|..+|... .+.|+. |..++.+...
T Consensus 10 ~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 10 GLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3455688888887777765443333344444444422 245665 6666666554
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.65 E-value=2.1e+02 Score=22.07 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
+.+.|++++..=. .++..+...++.-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4446666553332 344455556667788888888887665566777766667777666443
No 312
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.34 E-value=2e+02 Score=21.69 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=37.7
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
+.+.|++++..=. .++..+...+ +.-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3446666664433 3344455555 67788888888887765566677666666666666443
No 313
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.18 E-value=2.3e+02 Score=22.32 Aligned_cols=52 Identities=8% Similarity=0.099 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HhhcCChhhHHHHHHHHHH
Q 006396 495 KCKDLRKAFQLLNQMWLHNLEP--TSATYNILID-G-----LCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 546 (647)
..|++=+|-++++.+......+ ....|..|++ + ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3388888888888887643344 3455666665 2 2346788888888887765
No 314
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.14 E-value=2.2e+02 Score=22.02 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=36.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
+.+.|++++..=. .++..+...+ +.-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4445666654433 2334444444 56678888888877655556666666666666666443
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.96 E-value=2.1e+02 Score=21.87 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=36.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4446666654333 23344444566677888888887765555666666666666666644
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.92 E-value=69 Score=27.55 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=13.8
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCC
Q 006396 178 FHLLSQISGAWKVIQKLLIKGSDPD 202 (647)
Q Consensus 178 ~~~~~~~~~a~~~~~~~~~~~~~~~ 202 (647)
.++.|+.+....+++.+...+..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3445666666666665555544444
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=26.87 E-value=2e+02 Score=22.04 Aligned_cols=59 Identities=8% Similarity=0.054 Sum_probs=34.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3346666654332 2233344445 667888888887766555666666666666666543
No 318
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.79 E-value=2.6e+02 Score=22.87 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred CHHhHHHHHHHHHhc---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhCCCCCCh
Q 006396 97 SVVSLNAIMSRYCKL---GFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS-----MEEALEFTNDMGRHGVEPDA 168 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 168 (647)
+......+++++.+. .+++.|+-++.+|++.|-.|.-..-..++.+.-.-|. ...|...++.....|.+--.
T Consensus 3 ~Gd~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 82 (201)
T 3bge_A 3 LGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGE 82 (201)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHH
T ss_pred CchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHH
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 169 ITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
......+..++...+...+...+....+
T Consensus 83 i~LaqaviyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 83 RAIAQAIIYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHH
No 319
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=26.78 E-value=3.1e+02 Score=23.69 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=13.1
Q ss_pred cCCCHHHHHHHHHHHHh
Q 006396 620 QGGDLGSVFELAAVMIK 636 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~~ 636 (647)
-.++.++|.++.+.+.+
T Consensus 211 Iln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 211 ILNSPDRACRLAKAAFD 227 (261)
T ss_dssp TSCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 36899999888777754
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.40 E-value=2.3e+02 Score=22.04 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=11.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 006396 208 VLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555554
No 321
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.04 E-value=4.7e+02 Score=25.52 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHH--HH-HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 98 VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL-HPDAF--SY-NILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 98 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
...++.+++.|...+.++.|..+..+..--.. .++.. .| ..+...+.-.++|.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34677777778888888888877777641000 11111 12 23345555677788887777777654
No 322
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.99 E-value=3.1e+02 Score=23.44 Aligned_cols=11 Identities=0% Similarity=-0.094 Sum_probs=5.0
Q ss_pred HHHhcCCHHHH
Q 006396 142 GLCIAGSMEEA 152 (647)
Q Consensus 142 ~~~~~~~~~~a 152 (647)
..++.|+.+..
T Consensus 11 ~A~~~g~~~~v 21 (285)
T 1wdy_A 11 KAVQNEDVDLV 21 (285)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHcCCHHHH
Confidence 33445555433
No 323
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.01 E-value=1.4e+02 Score=20.75 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
.+......+.+.|++++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 45566778888888888887777665
No 324
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.88 E-value=2.7e+02 Score=22.39 Aligned_cols=153 Identities=14% Similarity=0.067 Sum_probs=80.7
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006396 96 PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILA 175 (647)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (647)
++...-...+..+.+.|..+....+. .+.. .++...-...+.++...++.+. ...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 56666677777777777654444444 3333 4566666666666666666543 333333433 35666666666
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
.++...++.+. ...+..+.. .++...-...+.++...++.+ +...+..+... ++..+-...+.++...|..
T Consensus 98 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHHhCch-
Confidence 67776666443 333333332 345555555566666665533 33334444332 3455555556666666543
Q ss_pred HHHHHHHHHH
Q 006396 256 EALGLLYEME 265 (647)
Q Consensus 256 ~a~~~~~~~~ 265 (647)
++...+..+.
T Consensus 169 ~~~~~L~~~l 178 (201)
T 3ltj_A 169 RVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.83 E-value=2.3e+02 Score=21.86 Aligned_cols=47 Identities=9% Similarity=-0.029 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG 147 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (647)
-..++..+...+.+-.|.++++.+.+.+...+..+....+..+...|
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455556666666555433334444334444444444
No 326
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.70 E-value=1.5e+02 Score=22.20 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=32.6
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 344555556667788888888887765566777777677777766543
No 327
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.69 E-value=1.4e+02 Score=22.76 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=32.2
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
.++..+...++.-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555666666778888888888776556677766666666666644
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.57 E-value=2.4e+02 Score=21.60 Aligned_cols=20 Identities=5% Similarity=-0.076 Sum_probs=8.7
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 006396 108 YCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~ 127 (647)
+...+..-.|.++++.+.+.
T Consensus 31 L~~~~~~~sa~ei~~~l~~~ 50 (145)
T 2fe3_A 31 LVNSMAHPTADDIYKALEGK 50 (145)
T ss_dssp HHHCSSCCCHHHHHHHHGGG
T ss_pred HHhCCCCCCHHHHHHHHHHh
Confidence 33333444444444444443
No 329
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.96 E-value=3.1e+02 Score=22.72 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHhHHHHHHHHH---hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 98 VVSLNAIMSRYC---KLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 98 ~~~~~~~~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
......+++++. |..+++.|+-++.+|++.|-.|.-..-..++.+.
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334555666554 4577888888888888877444433333333333
No 330
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.13 E-value=96 Score=21.66 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHc
Q 006396 569 VHKAMTFFCQMVEK 582 (647)
Q Consensus 569 ~~~A~~~~~~~~~~ 582 (647)
.+.|+.++.++++.
T Consensus 12 l~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 12 STAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666665543
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.97 E-value=2.3e+02 Score=21.35 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=6.9
Q ss_pred ChhhHHHHHHHHHhC
Q 006396 113 FAEVAKGLFCLMLKY 127 (647)
Q Consensus 113 ~~~~a~~~~~~~~~~ 127 (647)
..-.|.++++.+.+.
T Consensus 33 ~~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 33 RHMSAEDVYKALMEA 47 (136)
T ss_dssp CSBCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhh
Confidence 344444444444444
No 332
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.34 E-value=3.4e+02 Score=22.60 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=10.2
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006396 212 GYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~ 231 (647)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 34455555555555555444
No 333
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.33 E-value=1.4e+02 Score=22.36 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=16.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006396 106 SRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG 147 (647)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (647)
..+...+..-.|.++++.+.+.+...+..+....+..+...|
T Consensus 18 ~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 18 TLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 333333444444445544444432233333333334444433
No 334
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.31 E-value=3.3e+02 Score=22.39 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
-.+++.|+-.+.+|++.| .|....-..++.+.-.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 345555555555555555 3333333333333333
No 335
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=21.43 E-value=2.6e+02 Score=20.91 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 006396 208 VLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3445555555555555555554
No 336
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.37 E-value=1.3e+02 Score=28.90 Aligned_cols=70 Identities=9% Similarity=0.030 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
.+.+.+.|.+.|+..-+..+++.+...+..|....+. ... ......+|+.+...+++.+|.+.+..+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p------------~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQ------------LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCC------------ccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 3455566777777777777776666554322222221 011 344557778888888888888888777
Q ss_pred HhC
Q 006396 635 IKS 637 (647)
Q Consensus 635 ~~~ 637 (647)
.+.
T Consensus 247 ~~~ 249 (455)
T 3t5v_B 247 FQS 249 (455)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 337
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.32 E-value=3.6e+02 Score=22.47 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLIEK 372 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~ 372 (647)
.+..|.+.|.+++|.+++++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 345677778888888888777654
No 338
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.19 E-value=5.9e+02 Score=24.91 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=43.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccchhhh-hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
......|---=..+|+.+++.|..-..-... ..+..++.++ -+.+......|-+-|.+.|++-+|.+++..+-..+
T Consensus 171 ~~l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~-~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 171 AALKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEK-AGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp HHSSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHT-CC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred HHHcCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhc-CccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 3334444444456667777666432111111 1222333332 24566777888889999999999999998887663
No 339
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.04 E-value=1.3e+02 Score=22.96 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=15.4
Q ss_pred CChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC
Q 006396 77 SRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG 112 (647)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 112 (647)
++.-.|.++++.+.+.++..+..|.+..+..+...|
T Consensus 27 ~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 27 EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333444444444444333344444444444444444
No 340
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.24 E-value=4e+02 Score=22.60 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=13.3
Q ss_pred cCCCHHHHHHHHHHHHh
Q 006396 620 QGGDLGSVFELAAVMIK 636 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~~ 636 (647)
-.|+.++|.++.+.+.+
T Consensus 185 il~~~~~A~~lAk~afd 201 (234)
T 2br9_A 185 ILNSPDRACRLAKAAFD 201 (234)
T ss_dssp TSCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 46899999888877664
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.18 E-value=1.2e+02 Score=19.01 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=3.8
Q ss_pred ccHHHHHHHH
Q 006396 239 IAYSVLLSSM 248 (647)
Q Consensus 239 ~~~~~l~~~~ 248 (647)
.+|...++..
T Consensus 22 wsweqamr~i 31 (59)
T 2b7e_A 22 WSFSRIISEL 31 (59)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHh
Confidence 3344333333
Done!