Query 006397
Match_columns 647
No_of_seqs 614 out of 4012
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 22:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0029 NadB Aspartate oxidase 100.0 1E-107 3E-112 834.1 45.4 505 90-631 9-513 (518)
2 PLN02815 L-aspartate oxidase 100.0 7.2E-99 2E-103 832.9 56.5 560 85-644 26-586 (594)
3 PRK07395 L-aspartate oxidase; 100.0 1.5E-92 3.3E-97 780.6 51.2 528 85-640 6-553 (553)
4 PLN00128 Succinate dehydrogena 100.0 3E-92 6.6E-97 787.0 53.4 534 86-641 48-616 (635)
5 TIGR01176 fum_red_Fp fumarate 100.0 2.8E-92 6.1E-97 782.7 50.8 521 87-628 2-552 (580)
6 PRK06452 sdhA succinate dehydr 100.0 7.8E-92 1.7E-96 779.9 52.9 522 87-628 4-540 (566)
7 PRK08626 fumarate reductase fl 100.0 1.5E-91 3.3E-96 785.4 51.4 521 86-627 3-566 (657)
8 PTZ00139 Succinate dehydrogena 100.0 8.1E-91 1.8E-95 776.4 53.1 520 86-627 27-580 (617)
9 PRK08958 sdhA succinate dehydr 100.0 1.1E-90 2.3E-95 772.3 52.0 522 87-628 6-559 (588)
10 PRK09231 fumarate reductase fl 100.0 2E-90 4.4E-95 770.1 52.1 522 86-628 2-553 (582)
11 PRK08641 sdhA succinate dehydr 100.0 3.4E-90 7.3E-95 769.4 53.8 526 88-628 3-551 (589)
12 PRK07057 sdhA succinate dehydr 100.0 6.1E-90 1.3E-94 767.6 54.5 528 83-629 7-563 (591)
13 PRK09078 sdhA succinate dehydr 100.0 5.5E-90 1.2E-94 769.0 53.1 535 86-642 10-580 (598)
14 PRK09077 L-aspartate oxidase; 100.0 2.9E-89 6.3E-94 756.3 56.6 519 86-630 6-534 (536)
15 PRK07573 sdhA succinate dehydr 100.0 1E-89 2.2E-94 769.5 53.2 555 57-628 6-611 (640)
16 PRK08205 sdhA succinate dehydr 100.0 5.3E-89 1.1E-93 760.7 54.4 522 87-628 4-553 (583)
17 TIGR01811 sdhA_Bsu succinate d 100.0 4E-89 8.6E-94 760.9 51.9 526 91-627 1-574 (603)
18 PRK07803 sdhA succinate dehydr 100.0 1.1E-88 2.5E-93 761.3 54.3 543 86-644 6-602 (626)
19 PRK06069 sdhA succinate dehydr 100.0 1.2E-88 2.5E-93 758.7 53.5 526 85-627 2-550 (577)
20 PRK05945 sdhA succinate dehydr 100.0 1.1E-88 2.4E-93 757.7 52.1 523 87-628 2-549 (575)
21 PRK07804 L-aspartate oxidase; 100.0 3.3E-87 7.2E-92 739.9 53.5 507 84-628 12-523 (541)
22 PRK07512 L-aspartate oxidase; 100.0 9.3E-87 2E-91 731.7 50.5 487 85-627 6-495 (513)
23 PRK06263 sdhA succinate dehydr 100.0 5E-86 1.1E-90 733.1 54.3 520 86-628 5-532 (543)
24 TIGR01812 sdhA_frdA_Gneg succi 100.0 4.7E-86 1E-90 738.9 54.3 520 90-628 1-539 (566)
25 PRK05675 sdhA succinate dehydr 100.0 3E-86 6.5E-91 734.9 49.1 510 101-629 1-542 (570)
26 PRK08071 L-aspartate oxidase; 100.0 8.1E-86 1.8E-90 723.7 51.4 496 88-627 3-500 (510)
27 TIGR00551 nadB L-aspartate oxi 100.0 5.6E-85 1.2E-89 716.2 52.0 487 88-615 2-488 (488)
28 COG1053 SdhA Succinate dehydro 100.0 2.7E-85 5.8E-90 713.6 39.7 538 85-642 3-560 (562)
29 TIGR01816 sdhA_forward succina 100.0 5.4E-84 1.2E-88 717.1 50.2 499 107-628 1-532 (565)
30 PRK08401 L-aspartate oxidase; 100.0 1.6E-77 3.6E-82 652.8 46.2 456 89-625 2-458 (466)
31 TIGR02061 aprA adenosine phosp 100.0 6.9E-77 1.5E-81 657.2 47.5 518 90-642 1-611 (614)
32 PRK08275 putative oxidoreducta 100.0 2E-75 4.2E-80 649.2 48.4 516 86-642 7-552 (554)
33 PRK06854 adenylylsulfate reduc 100.0 6.2E-75 1.3E-79 648.4 48.9 517 86-641 9-600 (608)
34 PRK13800 putative oxidoreducta 100.0 6.7E-75 1.4E-79 675.4 46.5 499 85-628 10-542 (897)
35 KOG2403 Succinate dehydrogenas 100.0 7E-77 1.5E-81 607.9 22.5 539 87-644 54-625 (642)
36 PRK06175 L-aspartate oxidase; 100.0 3.6E-64 7.7E-69 542.0 44.5 428 87-555 3-431 (433)
37 KOG2404 Fumarate reductase, fl 100.0 2.3E-50 5E-55 387.2 21.4 373 90-487 11-466 (477)
38 PRK06481 fumarate reductase fl 100.0 9.1E-48 2E-52 423.0 37.3 375 85-493 58-504 (506)
39 PTZ00306 NADH-dependent fumara 100.0 1.1E-44 2.4E-49 430.5 39.0 393 85-496 406-906 (1167)
40 PF00890 FAD_binding_2: FAD bi 100.0 5.9E-44 1.3E-48 386.7 36.5 365 90-474 1-417 (417)
41 TIGR01813 flavo_cyto_c flavocy 100.0 1.6E-44 3.4E-49 393.2 32.1 366 90-486 1-439 (439)
42 PRK07121 hypothetical protein; 100.0 6.8E-43 1.5E-47 384.7 35.5 372 85-491 17-490 (492)
43 PRK08274 tricarballylate dehyd 100.0 2.9E-42 6.3E-47 378.1 35.6 378 87-493 3-462 (466)
44 PRK12837 3-ketosteroid-delta-1 100.0 8.5E-42 1.8E-46 376.3 37.4 379 85-490 4-510 (513)
45 PRK12845 3-ketosteroid-delta-1 100.0 3.4E-41 7.5E-46 372.8 37.1 383 84-490 12-563 (564)
46 PRK12844 3-ketosteroid-delta-1 100.0 4.1E-41 9E-46 373.4 34.3 383 86-492 4-550 (557)
47 PRK12835 3-ketosteroid-delta-1 100.0 6E-40 1.3E-44 365.2 34.8 387 85-494 8-572 (584)
48 PRK12834 putative FAD-binding 100.0 3.9E-39 8.5E-44 358.4 37.0 384 87-490 3-548 (549)
49 TIGR02485 CobZ_N-term precorri 100.0 3.2E-38 6.9E-43 342.4 35.0 372 93-492 1-430 (432)
50 PRK12839 hypothetical protein; 100.0 4.4E-38 9.6E-43 349.0 35.2 387 85-490 5-566 (572)
51 PRK07843 3-ketosteroid-delta-1 100.0 1.5E-37 3.3E-42 345.3 31.7 381 85-490 4-555 (557)
52 PRK12843 putative FAD-binding 100.0 1E-36 2.2E-41 340.1 36.1 390 84-493 12-573 (578)
53 PRK12842 putative succinate de 100.0 1.5E-36 3.2E-41 339.2 34.5 388 86-494 7-569 (574)
54 PRK06134 putative FAD-binding 100.0 1.4E-35 3E-40 331.2 35.4 388 84-492 8-571 (581)
55 COG2081 Predicted flavoprotein 99.9 1.8E-25 3.8E-30 225.7 30.2 346 87-492 2-407 (408)
56 PF03486 HI0933_like: HI0933-l 99.9 1.6E-24 3.4E-29 229.5 17.7 340 89-486 1-408 (409)
57 COG3573 Predicted oxidoreducta 99.9 3.1E-23 6.7E-28 201.4 23.5 389 87-490 4-550 (552)
58 PF02910 Succ_DH_flav_C: Fumar 99.9 3.4E-25 7.4E-30 196.9 9.0 112 530-641 1-115 (129)
59 TIGR00275 flavoprotein, HI0933 99.9 5.6E-21 1.2E-25 204.6 29.2 336 92-486 1-400 (400)
60 COG1249 Lpd Pyruvate/2-oxoglut 99.8 3.8E-19 8.1E-24 189.8 13.3 303 87-490 3-334 (454)
61 TIGR03862 flavo_PP4765 unchara 99.7 1.1E-14 2.5E-19 151.8 26.7 323 112-492 3-375 (376)
62 PLN02546 glutathione reductase 99.7 3.5E-16 7.6E-21 172.9 14.6 34 85-118 76-110 (558)
63 TIGR01424 gluta_reduc_2 glutat 99.7 5.7E-16 1.2E-20 168.9 15.7 42 88-131 2-44 (446)
64 TIGR01421 gluta_reduc_1 glutat 99.7 3.8E-16 8.3E-21 170.1 13.8 43 88-132 2-45 (450)
65 PLN02507 glutathione reductase 99.7 8.5E-16 1.8E-20 169.1 16.2 33 86-118 23-56 (499)
66 PTZ00058 glutathione reductase 99.7 6.4E-16 1.4E-20 170.8 14.3 47 85-133 45-92 (561)
67 PRK06467 dihydrolipoamide dehy 99.6 1.6E-15 3.4E-20 166.2 13.7 45 87-132 3-48 (471)
68 TIGR01423 trypano_reduc trypan 99.6 2.1E-15 4.4E-20 165.0 14.0 32 88-119 3-36 (486)
69 PRK06116 glutathione reductase 99.6 2.7E-15 5.9E-20 164.0 14.1 34 87-120 3-37 (450)
70 PRK06115 dihydrolipoamide dehy 99.6 3E-15 6.4E-20 164.0 14.2 45 88-133 3-48 (466)
71 TIGR01438 TGR thioredoxin and 99.6 5.8E-15 1.3E-19 161.9 15.2 49 88-136 2-51 (484)
72 PRK06370 mercuric reductase; V 99.6 1.7E-14 3.6E-19 158.4 16.9 36 86-121 3-39 (463)
73 KOG0405 Pyridine nucleotide-di 99.6 7.1E-15 1.5E-19 144.4 11.6 287 87-459 19-327 (478)
74 PRK05249 soluble pyridine nucl 99.6 4.1E-14 8.8E-19 155.4 17.1 40 86-125 3-43 (461)
75 PRK06327 dihydrolipoamide dehy 99.6 3.9E-14 8.4E-19 155.7 15.9 31 88-118 4-35 (475)
76 PRK06416 dihydrolipoamide dehy 99.6 2.2E-14 4.8E-19 157.4 13.5 34 87-120 3-37 (462)
77 PRK05976 dihydrolipoamide dehy 99.6 4E-14 8.6E-19 155.7 15.3 44 87-132 3-47 (472)
78 PRK14694 putative mercuric red 99.6 4.4E-14 9.6E-19 155.1 15.2 45 86-132 4-49 (468)
79 PRK04176 ribulose-1,5-biphosph 99.6 7.6E-14 1.6E-18 139.8 15.5 144 87-282 24-174 (257)
80 PRK08010 pyridine nucleotide-d 99.5 3.5E-14 7.5E-19 154.9 13.9 45 88-132 3-48 (441)
81 PRK07818 dihydrolipoamide dehy 99.5 5E-14 1.1E-18 154.6 15.2 44 88-133 4-48 (466)
82 COG0492 TrxB Thioredoxin reduc 99.5 2E-14 4.4E-19 146.4 10.6 50 436-493 252-301 (305)
83 PLN02661 Putative thiazole syn 99.5 1.9E-13 4E-18 139.9 17.0 144 86-281 90-244 (357)
84 COG1635 THI4 Ribulose 1,5-bisp 99.5 7.8E-14 1.7E-18 129.4 12.7 139 88-278 30-175 (262)
85 PTZ00153 lipoamide dehydrogena 99.5 3.7E-14 8.1E-19 158.9 12.2 47 87-133 115-162 (659)
86 PRK07845 flavoprotein disulfid 99.5 1.4E-13 3E-18 150.8 15.3 33 89-121 2-35 (466)
87 TIGR03140 AhpF alkyl hydropero 99.5 3.1E-14 6.6E-19 157.8 9.9 114 86-282 210-324 (515)
88 TIGR01350 lipoamide_DH dihydro 99.5 2.8E-13 6.2E-18 148.8 16.2 42 88-131 1-43 (461)
89 PF01946 Thi4: Thi4 family; PD 99.5 3.6E-13 7.8E-18 126.3 14.1 141 87-281 16-165 (230)
90 PRK13748 putative mercuric red 99.5 2.9E-13 6.4E-18 152.3 16.3 43 87-131 97-140 (561)
91 PRK06292 dihydrolipoamide dehy 99.5 3.9E-13 8.4E-18 147.6 15.4 34 87-120 2-36 (460)
92 PRK07251 pyridine nucleotide-d 99.5 2E-13 4.4E-18 148.7 12.9 46 88-133 3-49 (438)
93 PRK14727 putative mercuric red 99.5 2.2E-13 4.8E-18 149.8 13.1 44 87-131 15-59 (479)
94 TIGR02053 MerA mercuric reduct 99.5 1.5E-13 3.2E-18 150.9 11.7 42 89-132 1-43 (463)
95 PTZ00052 thioredoxin reductase 99.5 2.7E-13 5.9E-18 149.4 13.3 33 87-119 4-37 (499)
96 TIGR01372 soxA sarcosine oxida 99.5 6.2E-13 1.3E-17 157.5 17.2 123 2-124 27-200 (985)
97 TIGR00292 thiazole biosynthesi 99.5 8.7E-13 1.9E-17 131.7 15.4 144 87-281 20-170 (254)
98 PRK06912 acoL dihydrolipoamide 99.5 4.2E-13 9E-18 147.0 13.6 42 90-133 2-44 (458)
99 COG0644 FixC Dehydrogenases (f 99.5 1.3E-12 2.7E-17 140.4 16.9 152 87-283 2-154 (396)
100 TIGR03143 AhpF_homolog putativ 99.5 2.1E-13 4.5E-18 152.3 10.8 52 436-495 260-311 (555)
101 PRK15317 alkyl hydroperoxide r 99.4 2.6E-13 5.7E-18 150.5 10.8 115 86-283 209-324 (517)
102 TIGR00136 gidA glucose-inhibit 99.4 1.8E-11 3.9E-16 133.8 24.7 152 89-282 1-155 (617)
103 PRK07846 mycothione reductase; 99.4 7.8E-13 1.7E-17 144.1 14.2 42 88-133 1-43 (451)
104 PRK11101 glpA sn-glycerol-3-ph 99.4 1.5E-12 3.2E-17 145.2 15.0 184 87-282 5-212 (546)
105 KOG1335 Dihydrolipoamide dehyd 99.4 2.4E-12 5.2E-17 128.5 14.0 183 87-317 38-230 (506)
106 TIGR03452 mycothione_red mycot 99.4 1.5E-12 3.2E-17 142.1 12.6 42 88-133 2-44 (452)
107 TIGR01292 TRX_reduct thioredox 99.4 1.5E-12 3.2E-17 134.6 10.8 48 436-491 252-299 (300)
108 PRK13512 coenzyme A disulfide 99.4 2.5E-12 5.5E-17 139.9 11.8 32 90-121 3-37 (438)
109 KOG4716 Thioredoxin reductase 99.4 3.9E-11 8.4E-16 117.9 18.1 83 85-186 16-99 (503)
110 PRK10015 oxidoreductase; Provi 99.4 1.2E-11 2.7E-16 133.8 15.9 160 87-283 4-166 (429)
111 COG0578 GlpA Glycerol-3-phosph 99.3 4.9E-12 1.1E-16 135.6 11.5 185 87-283 11-227 (532)
112 KOG0042 Glycerol-3-phosphate d 99.3 4.3E-13 9.4E-18 139.2 3.1 187 86-282 65-288 (680)
113 TIGR03329 Phn_aa_oxid putative 99.3 3.9E-11 8.4E-16 131.5 18.5 184 85-282 21-238 (460)
114 PF01266 DAO: FAD dependent ox 99.3 2.8E-11 6E-16 128.1 16.3 179 90-283 1-205 (358)
115 PRK10262 thioredoxin reductase 99.3 5.9E-12 1.3E-16 131.5 10.8 36 86-121 4-40 (321)
116 PLN02464 glycerol-3-phosphate 99.3 3.2E-11 6.9E-16 136.0 16.3 68 212-283 230-298 (627)
117 PRK12831 putative oxidoreducta 99.3 8.6E-12 1.9E-16 136.2 11.2 49 436-493 412-461 (464)
118 PRK12266 glpD glycerol-3-phosp 99.3 6.1E-11 1.3E-15 131.1 18.0 183 87-282 5-217 (508)
119 PRK05329 anaerobic glycerol-3- 99.3 4.2E-10 9.2E-15 120.1 21.8 59 215-281 260-318 (422)
120 COG3634 AhpF Alkyl hydroperoxi 99.3 6.2E-13 1.3E-17 130.8 -0.1 61 213-282 265-326 (520)
121 KOG2415 Electron transfer flav 99.3 1.5E-11 3.2E-16 123.9 8.9 163 86-283 74-258 (621)
122 PRK09564 coenzyme A disulfide 99.3 1.3E-10 2.8E-15 127.2 17.1 33 90-122 2-37 (444)
123 PF00732 GMC_oxred_N: GMC oxid 99.2 8.5E-11 1.8E-15 121.3 14.4 62 218-281 196-258 (296)
124 PRK09754 phenylpropionate diox 99.2 2.3E-10 4.9E-15 123.1 17.0 52 437-490 255-308 (396)
125 TIGR01373 soxB sarcosine oxida 99.2 1.1E-10 2.4E-15 126.1 14.2 183 85-282 27-241 (407)
126 PRK13369 glycerol-3-phosphate 99.2 5E-11 1.1E-15 131.9 11.5 187 86-282 4-216 (502)
127 COG2509 Uncharacterized FAD-de 99.2 2.1E-09 4.6E-14 110.9 22.3 61 213-283 172-232 (486)
128 TIGR01316 gltA glutamate synth 99.2 3.8E-11 8.1E-16 130.9 9.7 48 436-492 402-449 (449)
129 TIGR02023 BchP-ChlP geranylger 99.2 1E-09 2.3E-14 117.7 19.9 64 213-283 91-157 (388)
130 PRK05192 tRNA uridine 5-carbox 99.2 4.5E-10 9.8E-15 123.2 16.8 153 87-282 3-158 (618)
131 PRK12409 D-amino acid dehydrog 99.2 6.8E-10 1.5E-14 120.2 18.1 46 89-134 2-49 (410)
132 COG0579 Predicted dehydrogenas 99.2 4.7E-10 1E-14 118.3 15.8 184 87-282 2-212 (429)
133 PRK12769 putative oxidoreducta 99.2 1.4E-09 3.1E-14 124.1 20.8 39 87-125 326-365 (654)
134 PRK00711 D-amino acid dehydrog 99.2 5.3E-10 1.1E-14 121.3 16.5 60 212-282 199-258 (416)
135 KOG1298 Squalene monooxygenase 99.2 8.2E-11 1.8E-15 117.8 8.9 160 85-284 42-211 (509)
136 TIGR01320 mal_quin_oxido malat 99.2 1.5E-09 3.2E-14 118.9 19.7 66 212-282 176-241 (483)
137 PRK10157 putative oxidoreducta 99.2 3.1E-10 6.6E-15 123.1 14.1 160 87-282 4-165 (428)
138 PRK09853 putative selenate red 99.2 2E-10 4.2E-15 132.5 13.1 47 437-492 795-841 (1019)
139 PRK06126 hypothetical protein; 99.2 1.3E-09 2.8E-14 122.3 19.2 65 214-283 126-190 (545)
140 TIGR02028 ChlP geranylgeranyl 99.1 2.4E-09 5.2E-14 115.0 20.2 43 447-493 267-309 (398)
141 PRK05257 malate:quinone oxidor 99.1 1.2E-09 2.7E-14 119.6 17.7 66 213-282 182-247 (494)
142 PF07992 Pyr_redox_2: Pyridine 99.1 1.5E-10 3.2E-15 112.2 9.3 31 90-120 1-32 (201)
143 PRK11749 dihydropyrimidine deh 99.1 2.8E-10 6.1E-15 124.6 11.7 50 436-494 403-453 (457)
144 PRK12775 putative trifunctiona 99.1 2.8E-09 6E-14 126.0 20.7 38 87-124 429-467 (1006)
145 PLN02697 lycopene epsilon cycl 99.1 7.3E-09 1.6E-13 113.8 22.6 142 86-282 106-249 (529)
146 PRK04965 NADH:flavorubredoxin 99.1 2E-09 4.3E-14 115.1 17.8 49 437-490 253-301 (377)
147 PRK12810 gltD glutamate syntha 99.1 7.7E-10 1.7E-14 121.5 14.8 50 436-494 416-466 (471)
148 PF01134 GIDA: Glucose inhibit 99.1 1.3E-09 2.9E-14 113.5 15.6 150 90-282 1-153 (392)
149 PRK11728 hydroxyglutarate oxid 99.1 1.5E-09 3.4E-14 116.6 16.7 178 88-282 2-205 (393)
150 TIGR03364 HpnW_proposed FAD de 99.1 8.9E-10 1.9E-14 117.3 14.7 46 89-134 1-47 (365)
151 PRK13339 malate:quinone oxidor 99.1 2.4E-09 5.1E-14 116.6 17.9 67 212-282 182-248 (497)
152 PRK14989 nitrite reductase sub 99.1 4.1E-10 8.9E-15 130.5 12.6 50 436-490 260-309 (847)
153 TIGR01377 soxA_mon sarcosine o 99.1 9.8E-10 2.1E-14 117.7 14.3 181 89-282 1-201 (380)
154 PRK01747 mnmC bifunctional tRN 99.1 3.1E-09 6.7E-14 121.7 18.6 51 88-138 260-312 (662)
155 PRK11259 solA N-methyltryptoph 99.1 9.5E-10 2.1E-14 117.6 13.5 182 88-282 3-205 (376)
156 PF12831 FAD_oxidored: FAD dep 99.1 9.4E-11 2E-15 127.0 5.5 146 90-279 1-148 (428)
157 TIGR03315 Se_ygfK putative sel 99.1 1.9E-09 4.1E-14 125.1 16.3 38 87-124 536-574 (1012)
158 PRK12779 putative bifunctional 99.1 3.6E-10 7.8E-15 132.2 10.2 49 436-493 578-627 (944)
159 PRK07364 2-octaprenyl-6-methox 99.1 3.4E-09 7.4E-14 114.9 17.2 62 215-283 122-183 (415)
160 PRK12778 putative bifunctional 99.1 7.6E-09 1.6E-13 120.1 20.4 48 437-493 703-750 (752)
161 PRK06185 hypothetical protein; 99.0 2.6E-09 5.7E-14 115.5 15.4 64 214-283 108-171 (407)
162 TIGR01318 gltD_gamma_fam gluta 99.0 2.7E-08 5.9E-13 109.0 22.1 38 87-124 140-178 (467)
163 PLN02985 squalene monooxygenas 99.0 4.7E-09 1E-13 115.9 16.1 64 214-283 147-210 (514)
164 PLN02463 lycopene beta cyclase 99.0 3.9E-08 8.5E-13 106.4 22.9 36 85-120 25-61 (447)
165 KOG0404 Thioredoxin reductase 99.0 2E-09 4.3E-14 100.2 10.8 119 86-282 6-125 (322)
166 TIGR02032 GG-red-SF geranylger 99.0 3.5E-09 7.7E-14 108.9 13.8 149 89-283 1-150 (295)
167 PF01494 FAD_binding_3: FAD bi 99.0 9.7E-10 2.1E-14 116.2 9.8 64 214-283 111-174 (356)
168 COG0665 DadA Glycine/D-amino a 99.0 4.3E-09 9.4E-14 112.9 14.8 184 87-283 3-214 (387)
169 PRK12814 putative NADPH-depend 99.0 1.5E-09 3.3E-14 123.4 11.4 52 436-496 452-504 (652)
170 PRK12770 putative glutamate sy 99.0 2E-09 4.2E-14 113.9 11.5 48 436-492 302-349 (352)
171 PRK12809 putative oxidoreducta 99.0 1.2E-08 2.5E-13 116.2 18.0 38 87-124 309-347 (639)
172 PRK13984 putative oxidoreducta 99.0 1.3E-09 2.7E-14 123.8 9.9 48 436-493 555-602 (604)
173 PRK13977 myosin-cross-reactive 99.0 3.6E-08 7.8E-13 107.4 20.5 69 214-283 226-295 (576)
174 TIGR02374 nitri_red_nirB nitri 99.0 9.1E-09 2E-13 119.5 16.7 49 437-490 252-300 (785)
175 PTZ00383 malate:quinone oxidor 99.0 5.4E-09 1.2E-13 114.2 13.8 60 212-282 209-274 (497)
176 PRK07045 putative monooxygenas 99.0 9.6E-09 2.1E-13 110.3 15.3 61 214-282 106-166 (388)
177 PRK06834 hypothetical protein; 99.0 1.5E-08 3.3E-13 111.5 16.6 59 214-283 100-158 (488)
178 PTZ00318 NADH dehydrogenase-li 98.9 3.3E-08 7.2E-13 107.2 19.0 55 436-494 294-349 (424)
179 PRK06183 mhpA 3-(3-hydroxyphen 98.9 1.4E-08 3E-13 113.7 16.5 159 86-283 8-176 (538)
180 PRK06184 hypothetical protein; 98.9 8.7E-09 1.9E-13 114.4 14.5 62 214-283 109-170 (502)
181 PRK09126 hypothetical protein; 98.9 1.8E-08 3.8E-13 108.4 16.4 60 214-283 110-169 (392)
182 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.1E-08 2.5E-13 109.6 14.1 62 213-283 103-164 (387)
183 PRK08244 hypothetical protein; 98.9 1.7E-08 3.6E-13 111.9 15.5 62 214-283 100-161 (493)
184 TIGR01317 GOGAT_sm_gam glutama 98.9 7E-09 1.5E-13 114.0 11.8 50 436-494 430-480 (485)
185 TIGR03169 Nterm_to_SelD pyridi 98.9 6.7E-08 1.4E-12 102.9 18.6 55 436-494 257-312 (364)
186 PRK07190 hypothetical protein; 98.9 3.1E-08 6.7E-13 109.0 16.2 58 215-283 110-167 (487)
187 PRK08013 oxidoreductase; Provi 98.9 2.5E-08 5.5E-13 107.5 15.2 60 214-283 111-170 (400)
188 PRK02106 choline dehydrogenase 98.9 2.9E-08 6.3E-13 111.6 16.2 59 219-282 205-263 (560)
189 PRK08773 2-octaprenyl-3-methyl 98.9 2.9E-08 6.2E-13 106.8 15.4 58 214-282 113-170 (392)
190 PRK05335 tRNA (uracil-5-)-meth 98.9 3.5E-08 7.5E-13 104.0 14.4 34 89-122 3-37 (436)
191 KOG2820 FAD-dependent oxidored 98.9 2.8E-08 6.1E-13 98.5 12.6 66 213-287 152-218 (399)
192 PRK08849 2-octaprenyl-3-methyl 98.9 3.9E-08 8.4E-13 105.4 15.0 59 215-283 111-169 (384)
193 PRK08132 FAD-dependent oxidore 98.9 5E-08 1.1E-12 109.5 16.5 63 214-283 125-187 (547)
194 PRK07608 ubiquinone biosynthes 98.8 6.7E-08 1.5E-12 103.8 16.8 60 213-283 110-169 (388)
195 PRK08020 ubiF 2-octaprenyl-3-m 98.8 4.1E-08 8.8E-13 105.6 15.1 60 214-283 112-171 (391)
196 PRK08243 4-hydroxybenzoate 3-m 98.8 4.8E-08 1E-12 105.0 15.6 63 214-283 103-165 (392)
197 PRK06847 hypothetical protein; 98.8 8E-08 1.7E-12 102.7 16.7 153 88-283 4-165 (375)
198 PRK06617 2-octaprenyl-6-methox 98.8 6.8E-08 1.5E-12 103.2 16.1 60 213-283 103-162 (374)
199 PRK07333 2-octaprenyl-6-methox 98.8 3.5E-08 7.6E-13 106.6 14.0 60 213-283 110-169 (403)
200 PRK08163 salicylate hydroxylas 98.8 4.8E-08 1E-12 105.2 14.8 61 213-283 108-168 (396)
201 TIGR01810 betA choline dehydro 98.8 1.1E-07 2.4E-12 106.3 17.9 59 218-281 197-255 (532)
202 PRK07538 hypothetical protein; 98.8 6.2E-08 1.3E-12 105.0 15.1 66 213-283 101-167 (413)
203 TIGR01988 Ubi-OHases Ubiquinon 98.8 6.4E-08 1.4E-12 103.8 15.0 60 214-283 106-165 (385)
204 PRK07494 2-octaprenyl-6-methox 98.8 6.1E-08 1.3E-12 104.1 14.8 37 85-121 4-41 (388)
205 PLN00093 geranylgeranyl diphos 98.8 1.2E-07 2.6E-12 103.1 17.0 37 85-121 36-73 (450)
206 TIGR03378 glycerol3P_GlpB glyc 98.8 3.1E-07 6.7E-12 97.1 18.9 61 213-281 262-323 (419)
207 COG0445 GidA Flavin-dependent 98.8 1E-08 2.2E-13 108.0 7.5 151 88-282 4-159 (621)
208 TIGR02462 pyranose_ox pyranose 98.8 7.6E-08 1.6E-12 105.6 14.7 56 226-282 225-280 (544)
209 PRK05732 2-octaprenyl-6-methox 98.8 7.6E-08 1.6E-12 103.6 14.6 59 215-283 113-171 (395)
210 PRK11445 putative oxidoreducta 98.8 1.5E-07 3.2E-12 99.6 16.4 61 214-283 99-159 (351)
211 PRK05714 2-octaprenyl-3-methyl 98.8 5E-08 1.1E-12 105.4 13.1 59 214-283 112-170 (405)
212 KOG2960 Protein involved in th 98.8 1.1E-08 2.4E-13 94.4 6.6 143 88-278 76-231 (328)
213 PRK08850 2-octaprenyl-6-methox 98.8 9E-08 2E-12 103.4 14.2 60 214-283 111-170 (405)
214 TIGR02730 carot_isom carotene 98.8 4.4E-07 9.5E-12 100.6 20.0 58 214-281 229-286 (493)
215 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 1.6E-07 3.5E-12 100.8 15.2 63 214-283 103-165 (390)
216 KOG2853 Possible oxidoreductas 98.7 1.5E-07 3.2E-12 93.3 12.9 56 87-142 85-146 (509)
217 PLN02785 Protein HOTHEAD 98.7 4.1E-07 8.9E-12 101.8 17.6 56 226-282 231-291 (587)
218 TIGR01984 UbiH 2-polyprenyl-6- 98.7 1.9E-07 4.1E-12 100.1 14.5 60 213-282 104-163 (382)
219 PRK07236 hypothetical protein; 98.7 2.3E-07 4.9E-12 99.6 15.0 34 88-121 6-40 (386)
220 PRK12771 putative glutamate sy 98.7 4.6E-08 1E-12 110.0 9.9 51 436-495 395-446 (564)
221 KOG2844 Dimethylglycine dehydr 98.7 2.3E-07 4.9E-12 99.6 14.3 181 87-282 38-244 (856)
222 PF13738 Pyr_redox_3: Pyridine 98.7 7.4E-08 1.6E-12 93.4 10.1 58 213-281 81-138 (203)
223 PRK06475 salicylate hydroxylas 98.7 3.2E-07 7E-12 98.9 15.9 64 213-283 106-169 (400)
224 PRK06996 hypothetical protein; 98.7 3.4E-07 7.3E-12 98.7 14.9 58 214-280 115-173 (398)
225 TIGR01989 COQ6 Ubiquinone bios 98.7 3.2E-07 7E-12 100.0 14.9 62 214-283 117-185 (437)
226 COG1233 Phytoene dehydrogenase 98.6 3.7E-07 8.1E-12 100.5 14.8 56 214-279 224-279 (487)
227 PTZ00367 squalene epoxidase; P 98.6 5.6E-07 1.2E-11 100.1 16.1 34 87-120 32-66 (567)
228 PLN02172 flavin-containing mon 98.6 5.3E-07 1.1E-11 98.2 15.4 39 87-125 9-48 (461)
229 PRK09897 hypothetical protein; 98.6 9.2E-07 2E-11 97.4 17.1 36 89-124 2-40 (534)
230 PRK07588 hypothetical protein; 98.6 4.4E-07 9.6E-12 97.6 14.5 32 90-121 2-34 (391)
231 KOG1336 Monodehydroascorbate/f 98.6 1.4E-07 2.9E-12 98.4 9.4 71 417-488 309-380 (478)
232 TIGR01790 carotene-cycl lycope 98.6 5.1E-07 1.1E-11 97.0 14.2 34 90-123 1-35 (388)
233 PRK08294 phenol 2-monooxygenas 98.6 1.2E-06 2.7E-11 99.4 17.2 67 215-283 142-212 (634)
234 COG2303 BetA Choline dehydroge 98.6 7.5E-07 1.6E-11 99.1 15.0 61 218-282 206-267 (542)
235 PRK06753 hypothetical protein; 98.6 8.9E-07 1.9E-11 94.6 14.2 33 90-122 2-35 (373)
236 PF06039 Mqo: Malate:quinone o 98.5 2.9E-06 6.4E-11 88.9 17.2 65 214-282 181-245 (488)
237 KOG2311 NAD/FAD-utilizing prot 98.5 5E-07 1.1E-11 93.3 11.1 155 86-281 26-186 (679)
238 PRK07208 hypothetical protein; 98.5 5.8E-06 1.3E-10 91.5 20.1 62 214-280 218-279 (479)
239 PF05834 Lycopene_cycl: Lycope 98.5 1E-05 2.2E-10 86.3 20.8 33 90-122 1-36 (374)
240 PRK05868 hypothetical protein; 98.5 1.9E-06 4E-11 91.9 15.0 34 89-122 2-36 (372)
241 TIGR02733 desat_CrtD C-3',4' d 98.5 9.6E-06 2.1E-10 90.0 21.2 62 214-280 232-293 (492)
242 PLN02927 antheraxanthin epoxid 98.5 2.9E-06 6.3E-11 95.2 15.3 35 86-120 79-114 (668)
243 COG1252 Ndh NADH dehydrogenase 98.4 4.6E-06 1E-10 87.7 15.7 56 436-494 277-333 (405)
244 KOG1238 Glucose dehydrogenase/ 98.4 2.2E-06 4.7E-11 93.1 13.3 62 218-282 256-319 (623)
245 TIGR02731 phytoene_desat phyto 98.4 7.3E-06 1.6E-10 89.9 17.6 62 214-279 213-274 (453)
246 KOG2852 Possible oxidoreductas 98.4 7.3E-07 1.6E-11 86.6 8.3 170 88-285 10-212 (380)
247 COG3380 Predicted NAD/FAD-depe 98.4 6.4E-07 1.4E-11 86.5 6.8 35 90-124 3-38 (331)
248 TIGR02734 crtI_fam phytoene de 98.4 7.6E-06 1.6E-10 91.1 16.5 57 214-280 219-275 (502)
249 COG2072 TrkA Predicted flavopr 98.3 5E-06 1.1E-10 90.2 13.3 39 86-124 6-46 (443)
250 TIGR03219 salicylate_mono sali 98.3 3.6E-06 7.8E-11 91.2 12.1 33 90-122 2-36 (414)
251 PF04820 Trp_halogenase: Trypt 98.3 9.9E-06 2.2E-10 88.3 15.2 63 213-285 153-215 (454)
252 PLN02612 phytoene desaturase 98.3 2.5E-05 5.3E-10 87.8 18.3 57 214-279 308-364 (567)
253 COG3075 GlpB Anaerobic glycero 98.3 2.1E-05 4.6E-10 78.1 15.1 57 216-280 260-316 (421)
254 TIGR03377 glycerol3P_GlpA glyc 98.3 1.3E-05 2.8E-10 89.3 15.7 66 212-282 126-191 (516)
255 PTZ00363 rab-GDP dissociation 98.3 1.5E-05 3.4E-10 86.0 15.2 56 214-278 232-287 (443)
256 KOG2614 Kynurenine 3-monooxyge 98.2 6.2E-06 1.3E-10 84.9 10.8 37 89-125 3-40 (420)
257 PF13450 NAD_binding_8: NAD(P) 98.2 1.3E-06 2.9E-11 68.1 4.1 35 93-127 1-36 (68)
258 PF13454 NAD_binding_9: FAD-NA 98.1 1.5E-05 3.3E-10 73.7 10.4 30 92-121 1-36 (156)
259 TIGR02732 zeta_caro_desat caro 98.1 8.1E-05 1.8E-09 81.9 17.5 65 213-281 218-284 (474)
260 TIGR01789 lycopene_cycl lycope 98.1 1.9E-05 4.1E-10 84.0 11.6 37 90-126 1-40 (370)
261 COG1148 HdrA Heterodisulfide r 98.0 9.3E-06 2E-10 84.5 7.1 39 86-124 122-161 (622)
262 PF00743 FMO-like: Flavin-bind 98.0 2.5E-05 5.5E-10 86.4 10.7 141 90-282 3-151 (531)
263 KOG1399 Flavin-containing mono 98.0 2.2E-05 4.7E-10 84.3 9.5 37 88-124 6-43 (448)
264 PRK06567 putative bifunctional 98.0 8.1E-05 1.8E-09 85.8 13.8 34 87-120 382-416 (1028)
265 PRK08255 salicylyl-CoA 5-hydro 98.0 3.7E-05 8E-10 89.5 11.3 32 90-121 2-36 (765)
266 COG1232 HemY Protoporphyrinoge 98.0 0.00021 4.5E-09 76.5 15.7 35 90-124 2-39 (444)
267 PF00070 Pyr_redox: Pyridine n 97.9 0.00013 2.9E-09 59.0 10.9 31 91-121 2-33 (80)
268 TIGR02352 thiamin_ThiO glycine 97.9 9.3E-05 2E-09 77.7 12.7 62 212-284 135-196 (337)
269 PLN02487 zeta-carotene desatur 97.9 0.00035 7.5E-09 78.0 16.5 67 212-281 293-360 (569)
270 KOG4254 Phytoene desaturase [C 97.9 8.5E-05 1.8E-09 77.0 10.3 57 215-281 265-321 (561)
271 TIGR03197 MnmC_Cterm tRNA U-34 97.8 0.0004 8.6E-09 74.4 15.7 61 212-284 133-193 (381)
272 COG1251 NirB NAD(P)H-nitrite r 97.8 0.00017 3.7E-09 79.4 11.7 48 438-490 258-305 (793)
273 PRK05976 dihydrolipoamide dehy 97.7 0.00031 6.7E-09 77.5 13.3 33 89-121 181-214 (472)
274 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.1E-05 6.6E-10 81.7 5.0 39 89-127 2-41 (377)
275 KOG0029 Amine oxidase [Seconda 97.7 4.1E-05 8.8E-10 83.7 5.3 39 86-124 13-52 (501)
276 PF06100 Strep_67kDa_ant: Stre 97.7 0.0013 2.9E-08 70.1 16.1 65 214-281 207-274 (500)
277 PLN02576 protoporphyrinogen ox 97.6 5.5E-05 1.2E-09 84.1 5.7 39 87-125 11-51 (496)
278 PRK07233 hypothetical protein; 97.6 5.7E-05 1.2E-09 82.3 5.4 37 90-126 1-38 (434)
279 PF13434 K_oxygenase: L-lysine 97.6 0.00058 1.3E-08 71.5 12.3 66 215-283 96-161 (341)
280 KOG2665 Predicted FAD-dependen 97.6 0.00028 6E-09 69.9 8.7 38 86-123 46-86 (453)
281 COG4529 Uncharacterized protei 97.6 0.0011 2.4E-08 70.3 13.7 40 89-128 2-45 (474)
282 PRK06416 dihydrolipoamide dehy 97.6 0.00086 1.9E-08 73.8 13.7 33 89-121 173-206 (462)
283 TIGR01350 lipoamide_DH dihydro 97.6 0.00093 2E-08 73.5 13.9 32 89-120 171-203 (461)
284 TIGR03140 AhpF alkyl hydropero 97.5 0.00092 2E-08 74.5 13.6 50 228-281 401-450 (515)
285 COG0562 Glf UDP-galactopyranos 97.5 9.2E-05 2E-09 73.6 4.9 40 89-128 2-42 (374)
286 PLN02268 probable polyamine ox 97.5 7.9E-05 1.7E-09 81.4 5.0 37 90-126 2-39 (435)
287 TIGR00562 proto_IX_ox protopor 97.5 8E-05 1.7E-09 82.0 5.0 37 89-125 3-44 (462)
288 TIGR03385 CoA_CoA_reduc CoA-di 97.5 0.00011 2.4E-09 80.0 6.1 53 436-490 248-303 (427)
289 PRK06912 acoL dihydrolipoamide 97.5 0.001 2.2E-08 73.1 13.5 32 89-120 171-203 (458)
290 PRK06115 dihydrolipoamide dehy 97.5 0.0013 2.8E-08 72.4 14.0 32 89-120 175-207 (466)
291 PRK15317 alkyl hydroperoxide r 97.5 0.00093 2E-08 74.5 12.5 49 228-280 400-448 (517)
292 PRK07818 dihydrolipoamide dehy 97.5 0.0016 3.4E-08 71.8 14.1 32 89-120 173-205 (466)
293 TIGR02053 MerA mercuric reduct 97.5 0.0012 2.6E-08 72.6 13.2 32 89-120 167-199 (463)
294 COG3349 Uncharacterized conser 97.5 0.00012 2.5E-09 78.2 4.8 35 90-124 2-37 (485)
295 PRK06370 mercuric reductase; V 97.4 0.0014 3E-08 72.2 13.2 33 89-121 172-205 (463)
296 PRK11883 protoporphyrinogen ox 97.4 0.00013 2.7E-09 80.1 5.0 36 90-125 2-40 (451)
297 TIGR01316 gltA glutamate synth 97.4 0.00099 2.1E-08 72.9 11.7 32 89-120 273-305 (449)
298 TIGR01292 TRX_reduct thioredox 97.4 0.0015 3.2E-08 67.2 12.1 48 228-280 190-237 (300)
299 PF13434 K_oxygenase: L-lysine 97.4 0.0016 3.4E-08 68.3 11.7 140 87-278 189-338 (341)
300 PRK06327 dihydrolipoamide dehy 97.4 0.0024 5.2E-08 70.5 13.8 32 89-120 184-216 (475)
301 PRK12831 putative oxidoreducta 97.4 0.0018 3.8E-08 71.1 12.6 32 89-120 282-314 (464)
302 PRK06116 glutathione reductase 97.3 0.0021 4.5E-08 70.5 13.1 32 89-120 168-200 (450)
303 PRK07251 pyridine nucleotide-d 97.3 0.0022 4.8E-08 70.0 13.1 33 89-121 158-191 (438)
304 PRK10262 thioredoxin reductase 97.3 0.0027 5.8E-08 66.3 12.9 98 89-279 147-246 (321)
305 PRK04965 NADH:flavorubredoxin 97.3 0.0023 4.9E-08 68.5 12.2 32 89-120 142-174 (377)
306 PRK09754 phenylpropionate diox 97.3 0.0021 4.5E-08 69.2 11.8 33 89-121 145-178 (396)
307 PRK05249 soluble pyridine nucl 97.2 0.003 6.4E-08 69.5 13.0 32 89-120 176-208 (461)
308 PRK12416 protoporphyrinogen ox 97.2 0.00028 6.1E-09 77.7 4.9 36 90-125 3-45 (463)
309 KOG1346 Programmed cell death 97.2 0.00024 5.1E-09 72.8 3.8 54 435-491 464-519 (659)
310 COG1231 Monoamine oxidase [Ami 97.2 0.00036 7.8E-09 73.3 5.1 42 86-127 5-47 (450)
311 PLN02852 ferredoxin-NADP+ redu 97.2 0.0004 8.7E-09 75.9 5.6 37 88-124 26-65 (491)
312 TIGR01421 gluta_reduc_1 glutat 97.2 0.0045 9.7E-08 67.8 13.3 32 89-120 167-199 (450)
313 TIGR00137 gid_trmFO tRNA:m(5)U 97.2 0.00039 8.5E-09 74.2 4.7 33 89-121 1-34 (433)
314 PLN02676 polyamine oxidase 97.2 0.0004 8.7E-09 76.6 5.0 39 88-126 26-66 (487)
315 PTZ00058 glutathione reductase 97.1 0.0057 1.2E-07 68.4 13.8 32 89-120 238-270 (561)
316 COG1249 Lpd Pyruvate/2-oxoglut 97.1 0.0047 1E-07 66.8 12.5 98 89-281 174-272 (454)
317 PLN02568 polyamine oxidase 97.1 0.00059 1.3E-08 75.9 5.1 39 87-125 4-48 (539)
318 PLN02529 lysine-specific histo 97.1 0.00064 1.4E-08 77.6 5.4 39 87-125 159-198 (738)
319 TIGR01424 gluta_reduc_2 glutat 97.1 0.0066 1.4E-07 66.4 13.2 32 89-120 167-199 (446)
320 PLN02328 lysine-specific histo 97.1 0.00068 1.5E-08 77.9 5.6 39 87-125 237-276 (808)
321 PRK09564 coenzyme A disulfide 97.0 0.0065 1.4E-07 66.5 13.1 32 89-120 150-182 (444)
322 PLN02507 glutathione reductase 97.0 0.0077 1.7E-07 66.8 13.4 32 89-120 204-236 (499)
323 PRK14989 nitrite reductase sub 97.0 0.006 1.3E-07 71.6 12.7 99 90-282 147-246 (847)
324 PRK06467 dihydrolipoamide dehy 97.0 0.0083 1.8E-07 66.1 13.2 32 89-120 175-207 (471)
325 TIGR03385 CoA_CoA_reduc CoA-di 97.0 0.0068 1.5E-07 66.0 12.4 32 89-120 138-170 (427)
326 PTZ00153 lipoamide dehydrogena 97.0 0.0088 1.9E-07 68.0 13.5 33 89-121 313-346 (659)
327 COG0446 HcaD Uncharacterized N 97.0 0.0058 1.3E-07 65.9 11.8 35 89-123 137-172 (415)
328 PRK08010 pyridine nucleotide-d 97.0 0.009 2E-07 65.3 13.2 32 89-120 159-191 (441)
329 PRK07845 flavoprotein disulfid 97.0 0.0093 2E-07 65.6 13.3 32 89-120 178-210 (466)
330 TIGR01438 TGR thioredoxin and 96.9 0.009 2E-07 66.0 12.9 30 90-119 182-212 (484)
331 PRK06292 dihydrolipoamide dehy 96.9 0.011 2.5E-07 64.9 13.7 32 89-120 170-202 (460)
332 PRK14727 putative mercuric red 96.9 0.012 2.5E-07 65.1 13.6 31 89-119 189-220 (479)
333 TIGR02374 nitri_red_nirB nitri 96.9 0.0064 1.4E-07 71.2 12.0 32 89-120 141-173 (785)
334 TIGR01423 trypano_reduc trypan 96.9 0.0092 2E-07 65.8 12.6 54 218-281 235-288 (486)
335 PRK14694 putative mercuric red 96.9 0.012 2.5E-07 65.0 13.4 31 89-119 179-210 (468)
336 KOG3855 Monooxygenase involved 96.9 0.0087 1.9E-07 61.9 10.8 36 86-121 34-74 (481)
337 PRK07846 mycothione reductase; 96.8 0.012 2.6E-07 64.4 12.9 32 89-120 167-199 (451)
338 KOG1276 Protoporphyrinogen oxi 96.8 0.0013 2.8E-08 68.1 4.8 39 87-125 10-51 (491)
339 KOG1335 Dihydrolipoamide dehyd 96.8 0.0064 1.4E-07 62.2 9.5 102 89-281 212-314 (506)
340 PRK11749 dihydropyrimidine deh 96.8 0.011 2.4E-07 64.9 12.4 32 89-120 274-307 (457)
341 PRK13512 coenzyme A disulfide 96.8 0.012 2.6E-07 64.3 11.9 32 89-120 149-181 (438)
342 COG2907 Predicted NAD/FAD-bind 96.7 0.0013 2.8E-08 66.2 3.9 41 88-128 8-48 (447)
343 PRK12810 gltD glutamate syntha 96.7 0.01 2.2E-07 65.4 11.3 55 222-281 337-400 (471)
344 COG0446 HcaD Uncharacterized N 96.7 0.0047 1E-07 66.6 8.4 53 437-490 254-309 (415)
345 PRK12770 putative glutamate sy 96.7 0.0098 2.1E-07 62.9 10.5 32 89-120 173-206 (352)
346 KOG0685 Flavin-containing amin 96.7 0.002 4.2E-08 67.9 4.9 37 88-124 21-59 (498)
347 PRK13748 putative mercuric red 96.7 0.017 3.6E-07 65.4 12.9 31 89-119 271-302 (561)
348 TIGR03143 AhpF_homolog putativ 96.7 0.012 2.7E-07 66.1 11.7 32 89-120 144-176 (555)
349 PLN02546 glutathione reductase 96.6 0.021 4.6E-07 63.9 13.0 32 89-120 253-285 (558)
350 PTZ00052 thioredoxin reductase 96.6 0.024 5.2E-07 62.9 12.9 30 90-119 184-214 (499)
351 TIGR03452 mycothione_red mycot 96.5 0.028 6E-07 61.6 13.1 32 89-120 170-202 (452)
352 PTZ00188 adrenodoxin reductase 96.5 0.003 6.5E-08 68.3 5.2 38 88-125 39-78 (506)
353 COG1252 Ndh NADH dehydrogenase 96.5 0.017 3.7E-07 61.2 10.5 54 216-283 211-264 (405)
354 PRK12779 putative bifunctional 96.5 0.027 5.8E-07 67.0 13.0 31 89-119 448-479 (944)
355 PTZ00318 NADH dehydrogenase-li 96.4 0.023 5E-07 61.7 11.6 49 218-281 232-280 (424)
356 PLN02976 amine oxidase 96.4 0.004 8.7E-08 74.4 5.8 40 86-125 691-731 (1713)
357 COG3634 AhpF Alkyl hydroperoxi 96.4 0.021 4.6E-07 57.7 9.8 49 219-271 394-442 (520)
358 PLN03000 amine oxidase 96.3 0.0043 9.3E-08 71.5 5.2 38 88-125 184-222 (881)
359 KOG2495 NADH-dehydrogenase (ub 96.2 0.07 1.5E-06 55.7 12.8 34 87-120 54-88 (491)
360 KOG1336 Monodehydroascorbate/f 96.2 0.037 8.1E-07 58.6 10.7 101 88-282 213-314 (478)
361 COG0493 GltD NADPH-dependent g 96.1 0.0071 1.5E-07 65.5 5.0 36 89-124 124-160 (457)
362 TIGR01372 soxA sarcosine oxida 95.8 0.075 1.6E-06 64.0 12.4 52 224-282 361-412 (985)
363 COG0492 TrxB Thioredoxin reduc 95.5 0.12 2.6E-06 53.2 11.2 94 89-281 144-238 (305)
364 PRK12814 putative NADPH-depend 95.5 0.15 3.1E-06 58.7 12.9 32 89-120 324-357 (652)
365 COG3486 IucD Lysine/ornithine 95.3 0.21 4.6E-06 52.1 12.0 60 215-278 276-337 (436)
366 KOG1800 Ferredoxin/adrenodoxin 95.2 0.021 4.5E-07 58.6 4.3 38 89-126 21-61 (468)
367 KOG3923 D-aspartate oxidase [A 95.1 0.093 2E-06 52.2 8.1 46 88-134 3-56 (342)
368 TIGR03169 Nterm_to_SelD pyridi 94.9 0.24 5.1E-06 52.6 11.6 48 219-281 196-243 (364)
369 COG3486 IucD Lysine/ornithine 94.8 0.59 1.3E-05 48.9 13.6 37 86-122 3-41 (436)
370 PRK12771 putative glutamate sy 94.8 0.26 5.6E-06 55.7 12.2 33 88-120 267-301 (564)
371 PF00996 GDI: GDP dissociation 94.6 0.04 8.6E-07 59.2 4.8 40 86-125 2-42 (438)
372 PRK13984 putative oxidoreducta 94.5 0.32 7E-06 55.5 12.1 49 229-281 476-538 (604)
373 KOG0399 Glutamate synthase [Am 94.4 0.04 8.6E-07 63.5 4.3 39 86-124 1783-1822(2142)
374 TIGR01317 GOGAT_sm_gam glutama 94.3 0.37 8.1E-06 53.3 11.7 32 89-120 284-317 (485)
375 KOG0404 Thioredoxin reductase 94.2 0.23 5E-06 47.3 8.2 56 219-278 197-252 (322)
376 COG1206 Gid NAD(FAD)-utilizing 94.1 0.045 9.7E-07 55.1 3.4 33 89-121 4-37 (439)
377 TIGR03315 Se_ygfK putative sel 93.9 0.47 1E-05 56.4 12.1 33 88-120 666-701 (1012)
378 PLN02852 ferredoxin-NADP+ redu 93.7 0.051 1.1E-06 59.6 3.5 50 437-494 374-423 (491)
379 PRK09853 putative selenate red 93.0 0.66 1.4E-05 55.1 11.2 32 89-120 669-703 (1019)
380 KOG2755 Oxidoreductase [Genera 92.0 0.098 2.1E-06 51.1 2.2 44 416-459 277-320 (334)
381 KOG2755 Oxidoreductase [Genera 90.7 0.16 3.5E-06 49.6 2.3 31 91-121 2-35 (334)
382 COG1251 NirB NAD(P)H-nitrite r 90.5 0.68 1.5E-05 52.0 7.2 52 220-282 193-244 (793)
383 PF02558 ApbA: Ketopantoate re 90.5 0.32 6.9E-06 44.3 4.0 30 91-120 1-31 (151)
384 PF01210 NAD_Gly3P_dh_N: NAD-d 90.3 0.29 6.3E-06 45.1 3.6 31 90-120 1-32 (157)
385 PRK01438 murD UDP-N-acetylmura 90.2 0.31 6.8E-06 53.9 4.4 32 89-120 17-49 (480)
386 KOG4716 Thioredoxin reductase 90.2 0.54 1.2E-05 47.7 5.5 34 90-123 200-234 (503)
387 KOG2495 NADH-dehydrogenase (ub 90.0 1.3 2.8E-05 46.7 8.2 45 227-281 285-329 (491)
388 PF13738 Pyr_redox_3: Pyridine 89.7 0.32 6.8E-06 46.7 3.6 34 88-121 167-201 (203)
389 PRK02705 murD UDP-N-acetylmura 89.7 0.3 6.6E-06 53.6 3.8 32 90-121 2-34 (459)
390 KOG3851 Sulfide:quinone oxidor 89.7 0.28 6.2E-06 49.3 3.1 34 87-120 38-74 (446)
391 PF01593 Amino_oxidase: Flavin 89.6 0.28 6E-06 52.8 3.5 29 98-126 1-30 (450)
392 COG0569 TrkA K+ transport syst 89.6 0.39 8.6E-06 47.1 4.1 31 90-120 2-33 (225)
393 PF02737 3HCDH_N: 3-hydroxyacy 89.2 0.38 8.1E-06 45.5 3.5 30 91-120 2-32 (180)
394 PF01134 GIDA: Glucose inhibit 88.7 0.55 1.2E-05 49.7 4.6 44 441-494 346-390 (392)
395 PRK15116 sulfur acceptor prote 88.4 0.58 1.3E-05 47.0 4.4 37 88-124 30-68 (268)
396 PF13241 NAD_binding_7: Putati 88.0 0.42 9.1E-06 40.5 2.7 33 88-120 7-40 (103)
397 PF01488 Shikimate_DH: Shikima 87.9 0.73 1.6E-05 41.2 4.4 32 88-119 12-45 (135)
398 TIGR01470 cysG_Nterm siroheme 87.8 0.65 1.4E-05 44.9 4.2 31 89-119 10-41 (205)
399 KOG4405 GDP dissociation inhib 86.9 0.6 1.3E-05 48.6 3.4 39 87-125 7-46 (547)
400 PF00899 ThiF: ThiF family; I 86.7 0.77 1.7E-05 41.0 3.8 34 89-122 3-38 (135)
401 TIGR02354 thiF_fam2 thiamine b 86.5 0.81 1.8E-05 44.0 4.0 35 88-122 21-57 (200)
402 COG0686 Ald Alanine dehydrogen 86.3 0.58 1.3E-05 47.0 3.0 34 87-120 167-201 (371)
403 PRK14106 murD UDP-N-acetylmura 86.1 0.8 1.7E-05 50.2 4.3 32 89-120 6-38 (450)
404 PF01262 AlaDh_PNT_C: Alanine 86.1 0.99 2.1E-05 42.1 4.3 33 88-120 20-53 (168)
405 PF03721 UDPG_MGDP_dh_N: UDP-g 86.0 0.65 1.4E-05 44.1 3.1 31 90-120 2-33 (185)
406 COG5044 MRS6 RAB proteins gera 86.0 1 2.2E-05 46.4 4.6 37 88-124 6-43 (434)
407 TIGR02355 moeB molybdopterin s 85.9 1.1 2.3E-05 44.5 4.7 38 88-125 24-63 (240)
408 PRK05708 2-dehydropantoate 2-r 85.8 1 2.2E-05 46.5 4.7 32 89-120 3-35 (305)
409 PRK06129 3-hydroxyacyl-CoA deh 85.7 0.84 1.8E-05 47.2 4.0 31 90-120 4-35 (308)
410 PRK06718 precorrin-2 dehydroge 85.4 1 2.2E-05 43.4 4.2 32 88-119 10-42 (202)
411 PRK06719 precorrin-2 dehydroge 85.3 1.1 2.3E-05 41.4 4.0 29 89-117 14-43 (157)
412 TIGR00518 alaDH alanine dehydr 85.2 0.92 2E-05 48.2 4.1 33 88-120 167-200 (370)
413 cd01487 E1_ThiF_like E1_ThiF_l 85.1 1.2 2.6E-05 41.8 4.3 32 91-122 2-35 (174)
414 KOG1439 RAB proteins geranylge 84.8 0.45 9.9E-06 49.4 1.5 40 87-126 3-43 (440)
415 PRK06249 2-dehydropantoate 2-r 84.7 1.3 2.9E-05 45.8 5.0 32 89-120 6-38 (313)
416 PRK12475 thiamine/molybdopteri 84.5 1.2 2.7E-05 46.5 4.5 37 88-124 24-62 (338)
417 PF02254 TrkA_N: TrkA-N domain 84.1 1.2 2.7E-05 38.3 3.8 30 91-120 1-31 (116)
418 PRK07688 thiamine/molybdopteri 84.1 1.3 2.7E-05 46.5 4.4 35 88-122 24-60 (339)
419 PRK09424 pntA NAD(P) transhydr 83.9 1.1 2.3E-05 49.4 3.9 33 88-120 165-198 (509)
420 PRK08328 hypothetical protein; 83.8 1.4 3E-05 43.5 4.4 35 88-122 27-63 (231)
421 PRK08644 thiamine biosynthesis 83.7 1.4 3.1E-05 42.7 4.4 35 88-122 28-64 (212)
422 TIGR02356 adenyl_thiF thiazole 83.6 1.4 3E-05 42.5 4.2 35 88-122 21-57 (202)
423 cd01483 E1_enzyme_family Super 83.4 1.6 3.5E-05 39.3 4.4 35 90-124 1-37 (143)
424 PRK08293 3-hydroxybutyryl-CoA 83.1 1.3 2.9E-05 45.2 4.1 31 90-120 5-36 (287)
425 PRK12549 shikimate 5-dehydroge 82.9 1.3 2.8E-05 45.2 3.9 31 89-119 128-160 (284)
426 cd00401 AdoHcyase S-adenosyl-L 82.9 1.4 3E-05 47.2 4.2 33 88-120 202-235 (413)
427 PRK05690 molybdopterin biosynt 82.6 1.5 3.3E-05 43.6 4.2 35 88-122 32-68 (245)
428 PRK08223 hypothetical protein; 82.6 1.7 3.7E-05 44.0 4.5 37 88-124 27-65 (287)
429 PRK09260 3-hydroxybutyryl-CoA 82.5 1.5 3.2E-05 44.9 4.1 31 90-120 3-34 (288)
430 COG4716 Myosin-crossreactive a 82.4 0.78 1.7E-05 47.2 2.0 38 88-125 22-64 (587)
431 PRK12921 2-dehydropantoate 2-r 82.4 1.6 3.4E-05 45.0 4.4 29 90-118 2-31 (305)
432 COG1748 LYS9 Saccharopine dehy 81.9 1.6 3.6E-05 46.1 4.2 32 89-120 2-35 (389)
433 cd05292 LDH_2 A subgroup of L- 81.7 1.7 3.7E-05 44.9 4.3 31 90-120 2-35 (308)
434 PRK06522 2-dehydropantoate 2-r 81.4 1.7 3.7E-05 44.6 4.3 30 90-119 2-32 (304)
435 COG1063 Tdh Threonine dehydrog 81.3 1.5 3.2E-05 46.3 3.8 31 90-120 171-203 (350)
436 COG3075 GlpB Anaerobic glycero 81.2 0.7 1.5E-05 46.9 1.1 33 88-120 2-35 (421)
437 COG1179 Dinucleotide-utilizing 81.2 2 4.3E-05 41.8 4.1 37 88-124 30-68 (263)
438 PRK04148 hypothetical protein; 81.1 1.2 2.6E-05 39.5 2.5 31 89-120 18-49 (134)
439 PRK07819 3-hydroxybutyryl-CoA 80.9 1.7 3.6E-05 44.5 3.8 31 90-120 7-38 (286)
440 COG1004 Ugd Predicted UDP-gluc 80.9 1.7 3.8E-05 45.4 3.9 31 90-120 2-33 (414)
441 PRK07066 3-hydroxybutyryl-CoA 80.5 1.9 4.1E-05 44.7 4.1 31 90-120 9-40 (321)
442 cd01485 E1-1_like Ubiquitin ac 80.4 2.6 5.6E-05 40.5 4.7 36 88-123 19-56 (198)
443 cd01080 NAD_bind_m-THF_DH_Cycl 80.3 2.3 4.9E-05 39.6 4.2 33 87-119 43-77 (168)
444 cd00757 ThiF_MoeB_HesA_family 80.2 2 4.4E-05 42.2 4.1 36 88-123 21-58 (228)
445 PRK07530 3-hydroxybutyryl-CoA 79.8 2 4.3E-05 44.0 4.0 31 90-120 6-37 (292)
446 cd00755 YgdL_like Family of ac 79.7 2 4.4E-05 42.2 3.8 36 88-123 11-48 (231)
447 PRK06035 3-hydroxyacyl-CoA deh 79.6 2 4.3E-05 44.0 3.9 31 90-120 5-36 (291)
448 TIGR00292 thiazole biosynthesi 79.6 1.9 4E-05 43.3 3.6 44 447-492 210-253 (254)
449 cd05311 NAD_bind_2_malic_enz N 79.5 2.5 5.5E-05 41.5 4.4 32 89-120 26-61 (226)
450 PRK12548 shikimate 5-dehydroge 79.0 2.7 5.8E-05 43.0 4.6 32 89-120 127-160 (289)
451 PF00056 Ldh_1_N: lactate/mala 78.9 2.8 6.1E-05 37.8 4.2 31 90-120 2-36 (141)
452 PRK12550 shikimate 5-dehydroge 78.6 2.5 5.4E-05 42.7 4.2 31 90-120 124-156 (272)
453 cd01492 Aos1_SUMO Ubiquitin ac 78.6 3 6.4E-05 40.0 4.5 35 87-121 20-56 (197)
454 cd01484 E1-2_like Ubiquitin ac 78.4 2.6 5.6E-05 41.6 4.1 33 91-123 2-36 (234)
455 PRK14027 quinate/shikimate deh 78.3 2.4 5.3E-05 43.1 4.0 31 89-119 128-160 (283)
456 COG1635 THI4 Ribulose 1,5-bisp 78.0 1.8 3.8E-05 41.6 2.7 47 445-493 214-260 (262)
457 PRK02472 murD UDP-N-acetylmura 77.9 2.2 4.9E-05 46.6 4.0 31 90-120 7-38 (447)
458 PRK05808 3-hydroxybutyryl-CoA 77.9 2.5 5.4E-05 43.0 4.1 31 90-120 5-36 (282)
459 TIGR01809 Shik-DH-AROM shikima 77.7 2.7 5.9E-05 42.8 4.2 31 89-119 126-158 (282)
460 cd01486 Apg7 Apg7 is an E1-lik 77.3 2.7 5.8E-05 42.8 3.9 34 90-123 1-36 (307)
461 PRK08229 2-dehydropantoate 2-r 77.1 2.9 6.3E-05 43.8 4.4 30 90-119 4-34 (341)
462 PRK05597 molybdopterin biosynt 77.0 2.9 6.3E-05 44.1 4.3 37 88-124 28-66 (355)
463 TIGR00561 pntA NAD(P) transhyd 76.6 2.9 6.3E-05 46.0 4.3 33 88-120 164-197 (511)
464 TIGR03378 glycerol3P_GlpB glyc 76.4 2 4.3E-05 46.1 2.9 32 89-120 1-33 (419)
465 PRK04176 ribulose-1,5-biphosph 76.0 2.7 5.9E-05 42.2 3.6 45 447-493 211-255 (257)
466 TIGR01381 E1_like_apg7 E1-like 75.9 2.9 6.4E-05 46.9 4.1 37 87-123 337-375 (664)
467 TIGR00936 ahcY adenosylhomocys 75.9 3.1 6.8E-05 44.4 4.2 33 88-120 195-228 (406)
468 PRK05600 thiamine biosynthesis 75.6 3.2 6.9E-05 44.1 4.1 37 88-124 41-79 (370)
469 PRK12778 putative bifunctional 75.6 3.3 7.2E-05 48.6 4.7 32 89-120 571-604 (752)
470 PRK07878 molybdopterin biosynt 75.5 3.2 7E-05 44.4 4.2 38 88-125 42-81 (392)
471 TIGR01763 MalateDH_bact malate 75.1 3.6 7.8E-05 42.4 4.3 29 90-118 3-33 (305)
472 PRK05562 precorrin-2 dehydroge 74.6 3.9 8.3E-05 39.9 4.1 32 88-119 25-57 (223)
473 PRK08762 molybdopterin biosynt 74.4 3.7 7.9E-05 43.8 4.3 36 87-122 134-171 (376)
474 PRK06153 hypothetical protein; 73.9 3.2 6.9E-05 43.7 3.5 39 88-126 176-216 (393)
475 cd05291 HicDH_like L-2-hydroxy 73.7 4 8.8E-05 42.1 4.3 31 90-120 2-35 (306)
476 PF00670 AdoHcyase_NAD: S-aden 73.6 3.6 7.9E-05 37.8 3.4 33 89-121 24-57 (162)
477 cd01489 Uba2_SUMO Ubiquitin ac 73.5 3.9 8.4E-05 42.1 4.0 33 90-122 1-35 (312)
478 KOG2018 Predicted dinucleotide 73.4 3.4 7.3E-05 41.5 3.4 32 90-121 76-109 (430)
479 PRK04308 murD UDP-N-acetylmura 73.4 3.9 8.5E-05 44.7 4.3 31 90-120 7-38 (445)
480 cd01488 Uba3_RUB Ubiquitin act 73.3 4 8.6E-05 41.6 4.0 34 90-123 1-36 (291)
481 PRK08306 dipicolinate synthase 73.1 4 8.6E-05 41.9 4.0 33 88-120 152-185 (296)
482 PRK14620 NAD(P)H-dependent gly 72.9 4.2 9.2E-05 42.3 4.3 31 90-120 2-33 (326)
483 PRK12749 quinate/shikimate deh 72.9 4.4 9.6E-05 41.4 4.3 32 89-120 125-158 (288)
484 cd01075 NAD_bind_Leu_Phe_Val_D 72.9 4.3 9.3E-05 39.0 4.0 31 89-119 29-60 (200)
485 KOG0024 Sorbitol dehydrogenase 72.5 4.8 0.0001 41.0 4.2 33 87-119 169-203 (354)
486 PRK06130 3-hydroxybutyryl-CoA 72.5 4.3 9.3E-05 42.0 4.2 31 90-120 6-37 (311)
487 PRK05476 S-adenosyl-L-homocyst 72.3 4.1 9E-05 43.8 4.0 34 88-121 212-246 (425)
488 PRK07411 hypothetical protein; 72.1 4.2 9.2E-05 43.5 4.1 37 88-124 38-76 (390)
489 PTZ00082 L-lactate dehydrogena 71.9 5 0.00011 41.7 4.4 33 89-121 7-41 (321)
490 KOG1346 Programmed cell death 71.7 8.6 0.00019 40.4 5.9 53 218-281 397-449 (659)
491 PLN02545 3-hydroxybutyryl-CoA 71.7 4.2 9.2E-05 41.7 3.9 31 90-120 6-37 (295)
492 COG1893 ApbA Ketopantoate redu 71.6 4.4 9.6E-05 41.8 4.0 31 90-120 2-33 (307)
493 PRK11064 wecC UDP-N-acetyl-D-m 71.6 4 8.7E-05 44.1 3.8 31 90-120 5-36 (415)
494 TIGR02853 spore_dpaA dipicolin 71.6 4.4 9.6E-05 41.3 3.9 33 88-120 151-184 (287)
495 TIGR03026 NDP-sugDHase nucleot 71.5 3.9 8.5E-05 44.2 3.7 31 90-120 2-33 (411)
496 cd05191 NAD_bind_amino_acid_DH 71.5 5.7 0.00012 32.2 3.9 30 89-118 24-55 (86)
497 PLN02661 Putative thiazole syn 71.5 4 8.6E-05 42.7 3.6 46 447-494 284-329 (357)
498 PLN02172 flavin-containing mon 71.4 3.7 8.1E-05 45.0 3.6 32 89-120 205-237 (461)
499 PLN02520 bifunctional 3-dehydr 71.2 4.2 9.2E-05 45.4 4.0 31 89-119 380-411 (529)
500 cd01078 NAD_bind_H4MPT_DH NADP 71.0 5 0.00011 38.2 4.0 31 89-119 29-61 (194)
No 1
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-107 Score=834.05 Aligned_cols=505 Identities=48% Similarity=0.719 Sum_probs=450.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 006397 90 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 169 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 169 (647)
||+|||+|+|||++|+.|++.-+|+||.|++...++|.|+||||.+.+.++|+++.|+.|++..|.++||++.++.++.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~~ 88 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVSE 88 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHh
Confidence 99999999999999999998769999999999889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006397 170 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 249 (647)
Q Consensus 170 ~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 249 (647)
++.++++|.++|++|+++.+|.+.+..+|+|+.+|++|..+.+|+.+...|.+++++.++|++++++.+.+|+.+++.
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~-- 166 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI-- 166 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc--
Confidence 999999999999999999999999999999999999999999999999999999999899999999999999998543
Q ss_pred ceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCC
Q 006397 250 AVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 329 (647)
Q Consensus 250 ~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~ 329 (647)
.+.|+.+.+.. ++...|.|+.|||||||.+.+|..++||..++|||++||+++|+.+.||||+|||||.+..++
T Consensus 167 -~~~Gv~~~~~~-~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~l~~~~---- 240 (518)
T COG0029 167 -GVAGVLVLNRN-GELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTALYIPQ---- 240 (518)
T ss_pred -eEeEEEEecCC-CeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccceecCCC----
Confidence 45699997643 367789999999999999999999999999999999999999999999999999999987653
Q ss_pred CCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChhHHHhhChh
Q 006397 330 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPN 409 (647)
Q Consensus 330 p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~~~ 409 (647)
...+|++|++||+|++++|.+|+|||..|+|.+||+|||+|+++|+.|+++++.. ||||+++++.+.+.++||+
T Consensus 241 -----~~~~LiSEAVRGEGA~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~-V~LD~s~~~~~~~~~rFP~ 314 (518)
T COG0029 241 -----RRAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VFLDISHIPGDFFERRFPT 314 (518)
T ss_pred -----CccceeehhhhcCccEEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCe-EEEeccCCCchhhhhhCcH
Confidence 2278999999999999999999999999999999999999999999999987644 9999999999889999999
Q ss_pred HHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHH
Q 006397 410 IAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 489 (647)
Q Consensus 410 ~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~ 489 (647)
++..|.+.|+||.++||||.|++||+||||.||.+++|+||||||+|||+|+|+||||||+||||+||+|||++|++.+.
T Consensus 315 I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~ 394 (518)
T COG0029 315 IYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIA 394 (518)
T ss_pred HHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh
Q 006397 490 DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 569 (647)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~ 569 (647)
...............+. .. .. ......-+++||++||+|+||+|+.++|++++.+|+.++.+....
T Consensus 395 ~~~~~~~~~~~~~~~~~-~~-----~~------~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~~~~~~l~~~~~~~~~~-- 460 (518)
T COG0029 395 GRLAPAPREAPTLPVRD-DY-----EE------NVLLAHDRHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEY-- 460 (518)
T ss_pred cccccCccCCCCCCccc-cc-----cc------ccccccCHHHHHHHHHhhcceEechHHHHHHHHHHHhhhhhhhhc--
Confidence 76533221111000000 00 00 001112357899999999999999999999999999998775532
Q ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecCCC
Q 006397 570 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILPSL 631 (647)
Q Consensus 570 ~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~~~~ 631 (647)
.+.+.. -+|++++|++|+.|||+|+||||+|||.|||.+.+++...+++.++.
T Consensus 461 -----~~~~~~----~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~~~~~~~~~~~~~ 513 (518)
T COG0029 461 -----ANFRVS----NRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTLND 513 (518)
T ss_pred -----cccccc----ccCHHHHHHHHHHHHHhccccccceecccCCCcCccccCceEEeccc
Confidence 011111 28999999999999999999999999999999999988888765543
No 2
>PLN02815 L-aspartate oxidase
Probab=100.00 E-value=7.2e-99 Score=832.95 Aligned_cols=560 Identities=81% Similarity=1.235 Sum_probs=479.7
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
.+.++||||||+|.|||+||+.|++.|+|+||||....+|+|.+++||+++...+.|+++.|+.|++..+.+++++++++
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~G~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhCCCEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 45679999999999999999999999999999999998999999999999888888999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.+++++++.++||+++|++|+...+|.+.....++|+.+|+++..+.+|..+...|.+.+++..||+|++++.+++|+++
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 99999999999999999999988888887778899999999988888999999999999987669999999999999986
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCC
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 324 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~ 324 (647)
++|+..+|+||.+.+..+|+...|.|+.|||||||++++|+.++|+..++|||+.||+++||.+.||||+||||+.+...
T Consensus 186 ~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefvQfhPt~~~~~ 265 (594)
T PLN02815 186 QDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFVQFHPTALADE 265 (594)
T ss_pred cCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCceeEEeeeeecCC
Confidence 44311139999998777888889999999999999999999999999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChhHHH
Q 006397 325 GLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKIL 404 (647)
Q Consensus 325 g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~ 404 (647)
+.+..|.......++++++++++|++++|.+|+|||++|++..++.+||+++++|..++.+++..++|+|+++.+.+.+.
T Consensus 266 ~~~~~~~~~~~~~~l~~ea~rg~G~ilvN~~GeRF~~~y~~~~ela~rd~va~ai~~e~~~~~~~~v~lD~~~~~~~~~~ 345 (594)
T PLN02815 266 GLPIKPAKARENAFLITEAVRGDGGILYNLAGERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREEIL 345 (594)
T ss_pred CccccccccccccceeehhhccCCcEEECCCCCCCccccCcccccCChHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHH
Confidence 43222322122357889999999999999999999999999889999999999999999776556899999999988888
Q ss_pred hhChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHH
Q 006397 405 SHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 484 (647)
Q Consensus 405 ~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~A 484 (647)
+++|.+.+.+.+.|+|+.++|++|.|.+||+||||.||.+++|+|||||||||++|+|+||+|||+||||++|+|||++|
T Consensus 346 ~~~p~i~~~~~~~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~A 425 (594)
T PLN02815 346 SHFPNIAAECLKRGLDITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRA 425 (594)
T ss_pred HHCHHHHHHHHHhCcCCCCCceeeechhcEeCCCeeECCCCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHH
Q 006397 485 VQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW 564 (647)
Q Consensus 485 g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~ 564 (647)
|+++++++.....+............+..............+.+++.+||++||+|+||+|++++|++||++|++|++++
T Consensus 426 g~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~ 505 (594)
T PLN02815 426 VQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNYVGIVRSTERLETAERKLEELEAEW 505 (594)
T ss_pred HHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHHHHhcCCEEEcHHHHHHHHHHHHHHHHHH
Confidence 99998876432111100000010000000000000011113567888999999999999999999999999999999887
Q ss_pred HHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeecC-CCcccccccccccc
Q 006397 565 ETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP-SLVNCTWSSRQLHK 643 (647)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 643 (647)
........++.+.++++++|++||+++|+++++|||+|+||||+|||+|||++||+|.+++++++ -+---+|+++.||+
T Consensus 506 ~~~~~~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (594)
T PLN02815 506 EAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSLHR 585 (594)
T ss_pred HHhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCCccChhHhcCEEEeeccCcccccCcccccc
Confidence 76443344544557789999999999999999999999999999999999999999777887776 44457999999998
Q ss_pred C
Q 006397 644 L 644 (647)
Q Consensus 644 ~ 644 (647)
-
T Consensus 586 ~ 586 (594)
T PLN02815 586 P 586 (594)
T ss_pred c
Confidence 5
No 3
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.5e-92 Score=780.58 Aligned_cols=528 Identities=40% Similarity=0.634 Sum_probs=447.8
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+.++||||||+|.||++||+.|++ | +|+||||....+|+|.+++||+.+...+.|+++.|+.|+++.+.++++++++
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv 84 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAV 84 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 4567999999999999999999975 9 9999999999889999999999988888899999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.+++++++.++||+++|++|+.. ++.+....+++|+.+|+++..+.+|..+...|.+.+.+..||+|++++.+++|+.
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~-~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~ 163 (553)
T PRK07395 85 RFLVEQAPEAIASLVEMGVAFDRH-GQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWL 163 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCeeecC-CCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhhee
Confidence 999999999999999999999865 4445556678899999998888889999999999987656999999999999998
Q ss_pred cC-CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceecc
Q 006397 244 TL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 244 ~~-~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~ 322 (647)
++ +| +|+||.+.+ +|+...|.|+.|||||||++.+|..+++++.++|||+.||+++||.+.+|||+||||+.+.
T Consensus 164 ~~~~g---~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q~hpt~~~ 238 (553)
T PRK07395 164 EPETG---RCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALT 238 (553)
T ss_pred cCCCC---EEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCcceeEEeeeec
Confidence 74 36 899998864 5776779999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC----ceEEEeCCCC
Q 006397 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE----KYVLLDISHK 398 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~----~~v~lD~~~~ 398 (647)
.++. ..+++++.++++|++++|.+|+|||++|+|..|+.+||+++++|.+++.+++. .+||+|++++
T Consensus 239 ~~~~---------~~~l~~e~~rg~g~ilvn~~G~RF~~~y~~~~El~~rd~v~~ai~~e~~~~~~~~~~~~v~ld~~~~ 309 (553)
T PRK07395 239 KPGA---------PRFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKTATDPATAHVWLDLRPI 309 (553)
T ss_pred CCCC---------CceeeehhccCCcEEEECCCCCCCccccCcccccccHHHHHHHHHHHHHhcCCCCCCceEEEecccc
Confidence 4321 15688999999999999999999999999989999999999999999876532 3799999999
Q ss_pred ChhHHHhhChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHH
Q 006397 399 PTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 478 (647)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~ 478 (647)
+.+.+.++||++.+++.+.|+|+.++|++|.|.+||+||||+||.+++|+||||||||||+|+|+||+|||+||||++|+
T Consensus 310 ~~~~~~~~~p~i~~~~~~~giD~~~~~i~v~P~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~gnsl~e~l 389 (553)
T PRK07395 310 PAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLASNSLLECL 389 (553)
T ss_pred chHHHHHhhHHHHHHHHHcCCCcCCCEeEEecceeecCCCeeECCCCcccCCCEEECccccccCCCcccchHHHHHHHHH
Confidence 98889999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Q 006397 479 VFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRID 558 (647)
Q Consensus 479 v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~ 558 (647)
|||++||+.++++......... ...... . ..........+.+++++||++||+++||+|++++|++|+++|+
T Consensus 390 vfG~~a~~~~~~~~~~~~~~~~-~~~~~~----~---~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~ 461 (553)
T PRK07395 390 VFAAQLAQLELPIEPPASPDLP-PISFII----D---ASQWKNEQEQIQRIRQELPELVWQSAGICREADTLERAIAQVE 461 (553)
T ss_pred HHHHHHHHHHHhhcccCCCccc-chhhHH----H---HhhhhccCCCHHHHHHHHHHHHHhcccEEEcHHHHHHHHHHHH
Confidence 9999999998754211100000 000000 0 0000011124678889999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCccc--------------ccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCC
Q 006397 559 ELEAEWETYLFEHGWEQ--------------TFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLP 624 (647)
Q Consensus 559 ~l~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~ 624 (647)
+|++++..+......+. +.++.+++|++||+++|+++++|||.|+||||+|||+|||++|++|.++
T Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D~p~~~~~~~~~ 541 (553)
T PRK07395 462 QWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLDYPQTDPAWQVH 541 (553)
T ss_pred HHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccChhhhce
Confidence 99887765321110000 0125667899999999999999999999999999999999998765444
Q ss_pred eeecCCCccccccccc
Q 006397 625 TIILPSLVNCTWSSRQ 640 (647)
Q Consensus 625 ~~~~~~~~~~~~~~~~ 640 (647)
++.+ +++|.+.|
T Consensus 542 ~~~~----~~~~~~~~ 553 (553)
T PRK07395 542 TLVQ----GERWWQSP 553 (553)
T ss_pred EEEE----cCEEecCC
Confidence 4443 67887654
No 4
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=100.00 E-value=3e-92 Score=787.03 Aligned_cols=534 Identities=35% Similarity=0.515 Sum_probs=454.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
+.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++|+++
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 45799999999999999999999999 999999999889999999999988765 578999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc--------ccceeecCCCcHHHHHHHHHHHHHcCCCcEEEc
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
++.+++++++.++||+++|++|++..+|.+....+++|+ ..|+.+..+.+|..+...|.+.+.+. ||+|++
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~-gv~i~~ 206 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKH-NTQFFV 206 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhC-CCEEEE
Confidence 999999999999999999999998888877666667775 44777778889999999999999874 999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccc
Q 006397 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~ 314 (647)
++.+++|+.+++| +|.||.+.+..+|+...|.|+.|||||||++++|..++++..+||||++||+++||.+.||||+
T Consensus 207 ~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mefv 283 (635)
T PLN00128 207 EYFALDLIMDSDG---ACQGVIALNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFV 283 (635)
T ss_pred eeEEEEEEEcCCC---EEEEEEEEEcCCCeEEEEEcCeEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcce
Confidence 9999999986556 8999999887788888999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006397 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .++++++++++|++++|.+|+|||++|++. .++.+||+++++|..++.++++
T Consensus 284 qfhPt~~~~~------------~~l~~ea~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 351 (635)
T PLN00128 284 QFHPTGIYGA------------GCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEK 351 (635)
T ss_pred EEecccccCC------------CeEEeeeccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCCC
Confidence 9999877531 467889999999999999999999999876 5899999999999999876532
Q ss_pred ceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCc----------ccccCcccccc
Q 006397 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----------T~ipGLyAaGe 457 (647)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|++|.|.+||+||||+||.+++ |+|||||||||
T Consensus 352 ~~v~ld~~~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE 431 (635)
T PLN00128 352 DHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGE 431 (635)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEecCCcccCCCCeEecccCcccCCccCceEeeec
Confidence 3599999999999999999998888776 699999999999999999999999999888 58999999999
Q ss_pred cccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHH
Q 006397 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKE 532 (647)
Q Consensus 458 ~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 532 (647)
|+|+|+||+|||+||+|++|+|||++||++|+++++..... .... ... .+. ....+.. ...++.+++++
T Consensus 432 ~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~~~~~~-~~~~--~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 505 (635)
T PLN00128 432 AACASVHGANRLGANSLLDIVVFGRACANRVAEIAKPGEKQ-KPLP--KDA-GEK--TIAWLDKLRNANGSLPTSKIRLN 505 (635)
T ss_pred cccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhcccccc-cccc--hhh-HHH--HHHHHHHhhcccCCCChHHHHHH
Confidence 99889999999999999999999999999999886432100 0000 000 000 0000000 01346788999
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q 006397 533 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYM 611 (647)
Q Consensus 533 l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R 611 (647)
||++||+++||+|++++|++++++|++|++++..+.... ....++++++++|++||+++|+++++|||+|+||||+|||
T Consensus 506 Lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~~~~aal~R~ESRG~H~R 585 (635)
T PLN00128 506 MQRVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLELENLLINACITMHSAEARKESRGAHAR 585 (635)
T ss_pred HHHHHhCceeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc
Confidence 999999999999999999999999999998876532111 1123567788999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCeeecC-CCcccccccccc
Q 006397 612 VDFPHVEENKRLPTIILP-SLVNCTWSSRQL 641 (647)
Q Consensus 612 ~D~P~~~~~~~~~~~~~~-~~~~~~~~~~~~ 641 (647)
+|||++||++|++++++. ++.+..+...|+
T Consensus 586 ~D~P~~~d~~w~~~~~~~~~~~~~~~~~~~~ 616 (635)
T PLN00128 586 EDFTKRDDENWMKHTLGYWEEGKVRLDYRPV 616 (635)
T ss_pred CCCCCCCccccccEEEEEecCCcceEEeccc
Confidence 999999998888887632 333434444454
No 5
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=100.00 E-value=2.8e-92 Score=782.73 Aligned_cols=521 Identities=33% Similarity=0.492 Sum_probs=454.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.++||||||||+|||+||+.|++. | +|+||||....++++.+++||+++..+..|+++.|+.|+++.+.+++|++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999987 6 9999999999899999999999888888899999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.+++++++.++||+++|++|++..+|.+....+++|+.+|+++..+.+|..+...|.+++.+..+|++++++.+++|+.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~ 161 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLV 161 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEe
Confidence 99999999999999999999999888988777889999999999988899999999999887756899999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccC
Q 006397 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~ 323 (647)
+ ++ +|+||.+.+..+|+...|.|+.||+||||++++|+.++++..+||||+.||+++||.+.||||+||||+.+..
T Consensus 162 ~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~hPt~~~~ 237 (580)
T TIGR01176 162 D-DG---RVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPG 237 (580)
T ss_pred e-CC---EEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEEEccccCC
Confidence 6 56 8999999887788888899999999999999999999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC----
Q 006397 324 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN---- 387 (647)
Q Consensus 324 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~---------~~---~~l~~rd~~~~~i~~~~~~~~---- 387 (647)
. .+++++.++++|++++|.+|+|||++|+ |. .+++|||+++++|+.++.+++
T Consensus 238 ~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~ 305 (580)
T TIGR01176 238 T------------GILMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDT 305 (580)
T ss_pred C------------ceEEeecccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCC
Confidence 1 4678999999999999999999999985 32 589999999999999998764
Q ss_pred --CceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCC
Q 006397 388 --EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLH 464 (647)
Q Consensus 388 --~~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~ 464 (647)
+..||+|+++++.+.+.++||.+.+++.. .|+|+.+++++|.|.+||+||||+||.+++|+||||||||||+|+|+|
T Consensus 306 ~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~t~i~GLyAaGe~a~~G~h 385 (580)
T TIGR01176 306 PYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLH 385 (580)
T ss_pred CCCCEEEEEcCCCCHHHHHHHhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcccccCCeEeeecccccCcC
Confidence 23699999999998899999999988888 599999999999999999999999999999999999999999988999
Q ss_pred CCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHHHHHHHHh
Q 006397 465 GANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWR 539 (647)
Q Consensus 465 Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~ 539 (647)
|+|||+||||++|+|||++||++|++|+......... .... .... ...++.. ....+.+++++||++||+
T Consensus 386 Ganrl~g~sl~~~~v~G~~ag~~aa~~~~~~~~~~~~--~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 460 (580)
T TIGR01176 386 GANRLGSNSLAELVVFGRRAGEAAAERAARHQKSNES--AIRA-QART--VELRLERLLSQHGGENWADIRAEMGATMES 460 (580)
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHhhccccccCcc--chhh-hHHH--HHHHHHHHhhccCcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987442110000 0000 0000 0000000 012467889999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCC--CC
Q 006397 540 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF--PH 616 (647)
Q Consensus 540 ~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~--P~ 616 (647)
|+||+|++++|++||.+|++|++++..+.... ....++++++++|++|||++|+++++|||+|+||||+|||.|| |+
T Consensus 461 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P~ 540 (580)
T TIGR01176 461 GCGIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCTE 540 (580)
T ss_pred cccEEECHHHHHHHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 99999999999999999999998877643221 2234578899999999999999999999999999999999999 99
Q ss_pred CccCCCCCeeec
Q 006397 617 VEENKRLPTIIL 628 (647)
Q Consensus 617 ~~~~~~~~~~~~ 628 (647)
++|++|.+++++
T Consensus 541 ~~d~~~~~~~~~ 552 (580)
T TIGR01176 541 RDDVHFLKHTLA 552 (580)
T ss_pred cCchhhcceEEE
Confidence 998878877654
No 6
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=7.8e-92 Score=779.92 Aligned_cols=522 Identities=35% Similarity=0.560 Sum_probs=450.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec----CCCCCHHHHHHHHHHhcCCCCCHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL----CPSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~----~~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
.++||||||+|.|||+||+.+++.| +|+||||....+|+|.+++||+++.. .+.|+++.++.|++..+.++++++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 5689999999999999999999999 99999999888899999999988644 357999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006397 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDL 241 (647)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l 241 (647)
+++.+++++++.++||+++|++|+..++|.+....+++++.+|+.+..+.+|..+...|.+.+.+. ||++++++.+++|
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~~~~L 162 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGL-NVDFYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhC-CCEEEeCcEEEEE
Confidence 999999999999999999999999888887777778999999998888888999999999988874 9999999999999
Q ss_pred EecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceec
Q 006397 242 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 321 (647)
Q Consensus 242 ~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~ 321 (647)
+.+ +| +|+||.+.+..+|+...|.|+.|||||||++.+|+.+++++.+||||+.||+++||.+.||||+||||+.+
T Consensus 163 i~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~pt~~ 238 (566)
T PRK06452 163 VTD-NK---KVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTAL 238 (566)
T ss_pred EEE-CC---EEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEeeeEE
Confidence 986 67 99999998876788788999999999999999999899999999999999999999999999999999876
Q ss_pred cCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---ceEEEeCCC
Q 006397 322 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---KYVLLDISH 397 (647)
Q Consensus 322 ~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~---~~v~lD~~~ 397 (647)
... .+++++.++++|++++|.+|+|||++|++. .++.+||++++++..++.++++ .++|+|+++
T Consensus 239 ~~~------------~~l~~e~~rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~~~~~v~lD~~~ 306 (566)
T PRK06452 239 YPS------------DVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGFPGGYVGLDLTH 306 (566)
T ss_pred CCC------------CeEEEEeeecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCCCCCeEEEEccc
Confidence 421 457888999999999999999999999875 6899999999999999987543 479999999
Q ss_pred CChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCccc-ccCcccccccccCCCCCCCccCchhhH
Q 006397 398 KPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN-VRGLYVAGEVACTGLHGANRLASNSLL 475 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~-ipGLyAaGe~a~gG~~Ga~rl~g~sl~ 475 (647)
.+.+.+.++||.+.+.+.. .|+|+.+++++|.|.+||+||||+||.+++|+ ||||||||||+|+|+||+|||+||||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~ 386 (566)
T PRK06452 307 LGEEYIKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLL 386 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecccCEecCCeEECCCCCcCCcCCeEecccccccCCCCcccccchHHH
Confidence 9888888999988888888 59999999999999999999999999999996 999999999997799999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccccccCcccc-c-ccch-hhhhcHHHHHHHHHHHHHhcCccccCHHHHHH
Q 006397 476 EALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG-C-NVMH-NILRRTKEVRKELQSIMWRYVGIVRSTTSLQT 552 (647)
Q Consensus 476 ~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~ 552 (647)
+|+|||++||++|+++++....... .. .... .+.... . .... .....+.+++++||++||+|+||+|++++|++
T Consensus 387 ~~~v~G~~Ag~~aa~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~ 463 (566)
T PRK06452 387 DTLVFGQVTGRTVVQFLKSNPGNPT-SN-YEKE-AEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGLLN 463 (566)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCc-cc-hhhh-HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 9999999999999998754211000 00 0000 000000 0 0000 01124678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006397 553 AEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 553 al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~ 628 (647)
||.+|++|++++.++...+ ....+++++.++|++||+++|+++++|||+|+||||+|||.|||++||++|.+++++
T Consensus 464 al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 540 (566)
T PRK06452 464 AMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHTIA 540 (566)
T ss_pred HHHHHHHHHHHHHhhccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCchhhccEEEE
Confidence 9999999998876643211 111356788999999999999999999999999999999999999999888887764
No 7
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=1.5e-91 Score=785.42 Aligned_cols=521 Identities=32% Similarity=0.483 Sum_probs=448.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC-----CCCCHHHHHHHHHHhcCCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-----PSDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~-----~~d~~~~~~~~~~~~g~~~~~ 159 (647)
+.++||||||||.|||+||+.|++.| +|+||||.+..+|+|..++||+.+..+ ..|+++.|+.|+++.+.+.+|
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 45799999999999999999999999 999999999988899999999876643 578999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHcCCccccCCCCc---------------------ccccccCCccccceeecCCCcHHHHHH
Q 006397 160 DETVRVVCTEGPDRIRELIAIGASFDRGEDGN---------------------LHLAREGGHSHHRIVHAADMTGREIER 218 (647)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~---------------------~~~~~~gg~~~~r~~~~~~~~g~~~~~ 218 (647)
++.++.+++++++.++||..+|++|++..+|. +....++++..+|+++..+.+|..+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 99999999999999999999999998755432 222346888888999988889999999
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhH
Q 006397 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGM 298 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~ 298 (647)
.|.+.+.+ .||+|++++.|++|+.+ +| +|.||++.+..+|+...|.|+.|||||||++++|..++|+..+||||+
T Consensus 163 ~L~~~~~~-~gv~i~~~~~~~~Li~~-~g---~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~ 237 (657)
T PRK08626 163 AVDNEAIK-LGVPVHDRKEAIALIHD-GK---RCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGA 237 (657)
T ss_pred HHHHHHHh-CCCEEEeeEEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHH
Confidence 99988887 49999999999999986 56 899999988778888889999999999999999999999999999999
Q ss_pred HHHHHcCC-eecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHH
Q 006397 299 AMAHRAQA-VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVA 376 (647)
Q Consensus 299 ~~a~~aGa-~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~ 376 (647)
+||+++|+ .+.||||+||||+.+... .+++++.++++|++++|.+|+|||++|+|. .|+++||+++
T Consensus 238 ~mA~~aGaa~l~~mE~vqfhPt~~~~~------------g~l~~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vs 305 (657)
T PRK08626 238 AIALETGVAPLGNMEAVQFHPTAIVPS------------GILVTEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVS 305 (657)
T ss_pred HHHHHcCCccccCccceEEeccEECCC------------CeEEEeeccCCCEEEECCCCCCCCcccCcccccccchhHHH
Confidence 99999995 799999999999887532 467899999999999999999999999874 5899999999
Q ss_pred HHHHHHHHhcCC------ceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCcc-c
Q 006397 377 RSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET-N 448 (647)
Q Consensus 377 ~~i~~~~~~~~~------~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T-~ 448 (647)
++|.+++.++++ ..||+|+++.+.+.+.+++|++.+++.. .|+||.+++++|.|.+||+||||+||.+++| +
T Consensus 306 rai~~~~~~g~g~~~~~~~~v~lD~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~t~~ 385 (657)
T PRK08626 306 RRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYG 385 (657)
T ss_pred HHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCCCcc
Confidence 999999987532 3599999999988888999999999987 6999999999999999999999999999999 6
Q ss_pred ccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-----hhh
Q 006397 449 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NIL 523 (647)
Q Consensus 449 ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 523 (647)
||||||||||+|+|+||+|||+||||++|+|||++||++|++|++....+.... . ....... ....+. +..
T Consensus 386 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~~~~~~~ 461 (657)
T PRK08626 386 LKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTA-L-VEKFVKK--QQDRIDELIAGEGK 461 (657)
T ss_pred cCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccc-h-hhhHHHH--HHHHHHHHhhcCCC
Confidence 999999999998899999999999999999999999999999875432110000 0 0000000 000000 011
Q ss_pred hcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhc
Q 006397 524 RRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALAR 602 (647)
Q Consensus 524 ~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R 602 (647)
.++.+++++||++||+++||+|++++|++|+++|++|++++..+.... ....++++++++|++|||++|+++++|||+|
T Consensus 462 ~~~~~i~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R 541 (657)
T PRK08626 462 ENVFEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALAR 541 (657)
T ss_pred CCHHHHHHHHHHHHhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhC
Confidence 356789999999999999999999999999999999998887643221 1224678899999999999999999999999
Q ss_pred ccCcccccccCCCCCccCCCCCeee
Q 006397 603 HESRGLHYMVDFPHVEENKRLPTII 627 (647)
Q Consensus 603 ~ESRG~h~R~D~P~~~~~~~~~~~~ 627 (647)
+||||+|||+|||++||++|+++++
T Consensus 542 ~ESRG~H~R~DyP~~~d~~~~~~~~ 566 (657)
T PRK08626 542 TESRGAHAREDYPKRNDRDWLNRTL 566 (657)
T ss_pred CCCccceecCcCcccCchhhceEEE
Confidence 9999999999999999988888775
No 8
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=100.00 E-value=8.1e-91 Score=776.36 Aligned_cols=520 Identities=34% Similarity=0.519 Sum_probs=448.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
+.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.++.|+++.+.+++|+++
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 45799999999999999999999999 999999999989999999999987654 578999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc--------ccceeecCCCcHHHHHHHHHHHHHcCCCcEEEc
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
++.+++++++.++||+++|++|++..+|.+....+++++ .+|+++..+.+|..+...|.+.+++ .||++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~-~gv~i~~ 185 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLK-YDCNFFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHh-CCCEEEe
Confidence 999999999999999999999998888866555566663 4688888888999999999999987 4999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccc
Q 006397 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~ 314 (647)
++.+++|+.+++| +|+||.+.+..+|+...|.|+.|||||||++++|..++++..++|||+.||+++||.+.||||+
T Consensus 186 ~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef~ 262 (617)
T PTZ00139 186 EYFALDLIMDEDG---ECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262 (617)
T ss_pred ceEEEEEEECCCC---EEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCceE
Confidence 9999999985466 8999999887789888999999999999999999989999999999999999999999999999
Q ss_pred cccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006397 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .++++++++++|++++|.+|+|||++|++. .++.+||++++++..++.++.+
T Consensus 263 q~~pt~~~~~------------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~ 330 (617)
T PTZ00139 263 QFHPTGIYGA------------GCLITEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPNK 330 (617)
T ss_pred EeccccccCC------------CcEEEeeccCCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCCC
Confidence 9999876532 457889999999999999999999999886 5899999999999999876532
Q ss_pred ceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCcc----------cccCcccccc
Q 006397 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T----------~ipGLyAaGe 457 (647)
.++|+|.++++.+.+.+++|.+...+.. .|+|+.+++++|.|.+||+||||.||.+++| +|||||||||
T Consensus 331 ~~v~lD~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE 410 (617)
T PTZ00139 331 DHIYLDLTHLPPETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGE 410 (617)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceeccc
Confidence 4699999999999999999998888776 6999999999999999999999999999876 7999999999
Q ss_pred cccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-----hhhhcHHHHHHH
Q 006397 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NILRRTKEVRKE 532 (647)
Q Consensus 458 ~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 532 (647)
|+|+|+||+|||+||+|++|+|||++||++|+++.+....... . .... ... ....+. +....+.+++++
T Consensus 411 ~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~-~--~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 484 (617)
T PTZ00139 411 AACASVHGANRLGANSLLDIVVFGRAAANTVMEILKPGRPQPD-L--PKDA-GEA--SIARLDKIRHNKGDISTAQIRKR 484 (617)
T ss_pred ccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhhcccCCCcc-c--chhh-hHH--HHHHHHHHhcccCCcChHHHHHH
Confidence 9988999999999999999999999999999988643210000 0 0000 000 000000 011247788999
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q 006397 533 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYM 611 (647)
Q Consensus 533 l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R 611 (647)
||++||+|+||+|++++|++|+++|++|++++..+... .....++++++++|++|||++|+++++|||+|+||||+|||
T Consensus 485 lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R 564 (617)
T PTZ00139 485 MQRTMQKHAAVFRIGESLQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHAR 564 (617)
T ss_pred HHHHHhhhceeEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhcc
Confidence 99999999999999999999999999999887653211 11234578899999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCeee
Q 006397 612 VDFPHVEENKRLPTII 627 (647)
Q Consensus 612 ~D~P~~~~~~~~~~~~ 627 (647)
.|||++||++|+++++
T Consensus 565 ~D~P~~~d~~~~~~~~ 580 (617)
T PTZ00139 565 DDFPERDDKNWMKHTL 580 (617)
T ss_pred CcCCcCCchhhceEEE
Confidence 9999999887887775
No 9
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.1e-90 Score=772.31 Aligned_cols=522 Identities=35% Similarity=0.530 Sum_probs=446.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.++||||||+|.|||+||+.|++.| +|+||||....+|+|.+++||+++..+ +.|+++.++.|+++.+.++++++++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 4689999999999999999999999 999999998888999999999987654 6799999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc-------ccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 236 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~-------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~ 236 (647)
+.+++++++.++||+++|++|++..+|.+....+++|+ .+|+++..+.+|..+...|.+++.+ .||++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLK-NHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhh-cCCEEEeCc
Confidence 99999999999999999999998888876665667764 4788888888999999999998886 599999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccc
Q 006397 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 316 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~ 316 (647)
.+++|+.+++| +|+||.+.+..+|+...|.|+.|||||||++++|..+++++.+||||+.||+++||.+.||||+||
T Consensus 165 ~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 241 (588)
T PRK08958 165 YALDLVKNQDG---AVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQF 241 (588)
T ss_pred EEEEEEECCCC---EEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceEe
Confidence 99999986567 999999987778888889999999999999999998999999999999999999999999999999
Q ss_pred cceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC------c
Q 006397 317 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE------K 389 (647)
Q Consensus 317 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~------~ 389 (647)
||+.+... .+++++.++++|++++|.+|+||+++|+|. .++.+||++++++..++.++++ .
T Consensus 242 ~Pt~~~~~------------~~l~~e~~rg~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~ 309 (588)
T PRK08958 242 HPTGIAGA------------GVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGP 309 (588)
T ss_pred ecCcccCC------------ceEEeeccccCceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCCC
Confidence 99876421 467888999999999999999999999886 5899999999999998876532 2
Q ss_pred eEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCc----------ccccCccccccc
Q 006397 390 YVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGEV 458 (647)
Q Consensus 390 ~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----------T~ipGLyAaGe~ 458 (647)
.+|+|+++++.+.+.+++|.+.+.+.. .++|+.++|++|.|.+||+||||+||.+++ |+|||||||||+
T Consensus 310 ~v~ld~~~l~~~~l~~~~~~~~~~~~~~~~~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~ 389 (588)
T PRK08958 310 HAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEI 389 (588)
T ss_pred eEEEEcccCCHHHHHHHcccHHHHHHHhcCCCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEecccc
Confidence 489999999988899999998888877 489999999999999999999999999988 579999999999
Q ss_pred ccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccc--cccccc-cccccccCcccccccchhhhhcHHHHHHHHHH
Q 006397 459 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASN-WWTRTVVPKSLGCNVMHNILRRTKEVRKELQS 535 (647)
Q Consensus 459 a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 535 (647)
+|+|+||+||++||||++|+|||++||++|+++++.... +..... ......+.. ... ......+.+++.+||+
T Consensus 390 a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~ 465 (588)
T PRK08958 390 ACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNR-WNN---NRNGEDPVQIRKALQE 465 (588)
T ss_pred cccCCCCCccchhhHHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHHHHHhh-hcc---cCCCCCHHHHHHHHHH
Confidence 977999999999999999999999999999998743210 010000 000000000 000 0011346778899999
Q ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCC
Q 006397 536 IMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDF 614 (647)
Q Consensus 536 ~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~ 614 (647)
+||+|+||+|++++|++||++|++|++++..+.... ....+.++++++|++|||++|+++++|||.|+||||+|||+||
T Consensus 466 ~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D~ 545 (588)
T PRK08958 466 CMQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDF 545 (588)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHHHHHHHHhcccCccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCCC
Confidence 999999999999999999999999998876543211 1123446788999999999999999999999999999999999
Q ss_pred CCCccCCCCCeeec
Q 006397 615 PHVEENKRLPTIIL 628 (647)
Q Consensus 615 P~~~~~~~~~~~~~ 628 (647)
|++||++|++++++
T Consensus 546 P~~~d~~~~~~~~~ 559 (588)
T PRK08958 546 PDRDDENWLCHSLY 559 (588)
T ss_pred CCCCchhhceEEEE
Confidence 99999888877654
No 10
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=2e-90 Score=770.08 Aligned_cols=522 Identities=32% Similarity=0.488 Sum_probs=453.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
+.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+++...+.|+++.|+.|+++.+.+++++++
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~ 81 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDV 81 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHH
Confidence 3578999999999999999999987 5 999999999889999999999988777889999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
++.+++++++.++||+++|++|++..+|.+....+++|+.+|+++..+.+|..+...|.+.+.+..+|++++++.+++|+
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li 161 (582)
T PRK09231 82 VEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDIL 161 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEE
Confidence 99999999999999999999999888888777778999999999988889999999999988776689999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceecc
Q 006397 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~ 322 (647)
.+ ++ +|.||++.+..+|+...|.|+.||+||||++.+|..++++..+||||+.||+++||.+.||||+||||+.+.
T Consensus 162 ~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt~~~ 237 (582)
T PRK09231 162 VD-DG---HVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLP 237 (582)
T ss_pred Ee-CC---EEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceeeecceeC
Confidence 86 56 899999887777887889999999999999999988889999999999999999999999999999998774
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccc---------cc---cccCchhHHHHHHHHHHHhcC---
Q 006397 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---------ER---AELAPRDVVARSIDDQLKKRN--- 387 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~---------~~---~~l~~rd~~~~~i~~~~~~~~--- 387 (647)
.. .++++++++++|++++|.+|+|||++|+ |. .++++||+++++++.++.++.
T Consensus 238 ~~------------~~l~~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~ 305 (582)
T PRK09231 238 GS------------GILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTIS 305 (582)
T ss_pred CC------------CceeeecccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCcc
Confidence 31 4678899999999999999999999984 33 489999999999999987653
Q ss_pred ---CceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCC
Q 006397 388 ---EKYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGL 463 (647)
Q Consensus 388 ---~~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~ 463 (647)
+..||+|+++++.+.+.+++|.+.+++.+ .|+|+.++++++.|..||++|||+||.+++|+||||||||||+|+|+
T Consensus 306 ~~~g~~v~ld~~~~~~~~~~~~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~ 385 (582)
T PRK09231 306 TPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGL 385 (582)
T ss_pred CCCCCEEEEECCcCCHHHHHHHhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEeccccccccc
Confidence 23699999999988888899999999988 59999999999999999999999999999999999999999987799
Q ss_pred CCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-----hhhhcHHHHHHHHHHHHH
Q 006397 464 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-----NILRRTKEVRKELQSIMW 538 (647)
Q Consensus 464 ~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~m~ 538 (647)
||+||++||+|++|+|||++||++|++|++....... ..... .... ...++. +....+.+++++||++||
T Consensus 386 hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 460 (582)
T PRK09231 386 HGANRLGSNSLAELVVFGRVAGEQAAERAATAGPGNE--AALDA-QAAD--VEQRLKALVNQEGGENWAKIRDEMGLSME 460 (582)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCccc--cchhh-HHHH--HHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998754221000 00000 0000 000000 011357789999999999
Q ss_pred hcCccccCHHHHHHHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccC--CC
Q 006397 539 RYVGIVRSTTSLQTAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD--FP 615 (647)
Q Consensus 539 ~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D--~P 615 (647)
+++||+|++++|++||.+|++|++++..+... .....++++++++|++|||++|+++++|||+|+||||+|||.| ||
T Consensus 461 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P 540 (582)
T PRK09231 461 EGCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCT 540 (582)
T ss_pred hcCcEEECHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCC
Confidence 99999999999999999999999877653211 1222457889999999999999999999999999999999999 99
Q ss_pred CCccCCCCCeeec
Q 006397 616 HVEENKRLPTIIL 628 (647)
Q Consensus 616 ~~~~~~~~~~~~~ 628 (647)
++||++|.+++++
T Consensus 541 ~~~d~~~~~~~~~ 553 (582)
T PRK09231 541 ERDDVNFLKHTLA 553 (582)
T ss_pred ccChhhhceEEEE
Confidence 9998888887753
No 11
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.4e-90 Score=769.36 Aligned_cols=526 Identities=29% Similarity=0.413 Sum_probs=443.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC---CCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++... ..|+++.|+.|++..+.++++++++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 469999999999999999999999 999999999988999999999987765 6799999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcC---CCcEEEcceEEEE
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAID 240 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~---~gv~i~~~~~v~~ 240 (647)
+.+++++++.++||+++|++|++..+|.+....+++|+.+|+.+..+.+|..+...|.+.+++. .+|++++++.+++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~ 162 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLG 162 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEE
Confidence 9999999999999999999999888887777778999999998888888999999998887653 2389999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeeccccccccccee
Q 006397 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 320 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~ 320 (647)
|+.+++| +|+||.+.+..+++...|.|+.|||||||++.+|..++|++.+||||++||+++||.+.||||+||||+.
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q~hPt~ 239 (589)
T PRK08641 163 AVLDDEG---VCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTA 239 (589)
T ss_pred EEECCCC---EEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEEEeeee
Confidence 9986567 8999999887778877899999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCcEE-EeCCCCc--cccc-cccccccCchhHHHHHHHHHHHh-c----CCceE
Q 006397 321 LADEGLPIKPKKTRENSFLITEAVRGDGGIL-YNLGMER--FMPL-YDERAELAPRDVVARSIDDQLKK-R----NEKYV 391 (647)
Q Consensus 321 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~-vn~~G~r--f~~~-y~~~~~l~~rd~~~~~i~~~~~~-~----~~~~v 391 (647)
+...+ ..++++++++++|+.+ +|.+|+| ||++ |++..++.+||++++++..++.. + +...+
T Consensus 240 ~~~~~----------~~~l~~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~~g~~~v 309 (589)
T PRK08641 240 IPGDD----------KLRLMSESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGINGENMV 309 (589)
T ss_pred ecCCC----------cceEeeeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCCCCceE
Confidence 75321 1357899999999866 4799999 6664 55567899999999999997732 2 12469
Q ss_pred EEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccC
Q 006397 392 LLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLA 470 (647)
Q Consensus 392 ~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~ 470 (647)
|+|+++.+.+.+.++||.+.+.+.. .|+|+.++|++|.|.+||+||||+||.+++|+||||||||||+ +|+||+|||+
T Consensus 310 ~ld~~~~~~e~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~~-~g~hGanrlg 388 (589)
T PRK08641 310 YLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQMTNIPGLFAAGECD-YSYHGANRLG 388 (589)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCCeECCCEEECcccc-cCCCCCCccc
Confidence 9999999999999999998888887 5999999999999999999999999999999999999999997 6999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHHHHHHHHhcCcccc
Q 006397 471 SNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWRYVGIVR 545 (647)
Q Consensus 471 g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~~~g~~r 545 (647)
||||++|+|||++||++|++|++................ ........+.. ....+.+++++||++||+|+||+|
T Consensus 389 gnsl~~~lv~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R 467 (589)
T PRK08641 389 ANSLLSAIYGGMVAGPNAVEYIKGLGKSADDVSSSVFEQ-ALKQEQEKFDNILSMDGTENAYVLHKELGEWMTDNVTVVR 467 (589)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccccCCcchhhH-HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999998754211000000000000 00000000000 012356788899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCC
Q 006397 546 STTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLP 624 (647)
Q Consensus 546 ~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~ 624 (647)
++++|++||++|++|++++.++...+ ....+.++++++|++|||++|+++++|||+|+||||+|||.|||++||++|.+
T Consensus 468 ~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~~ 547 (589)
T PRK08641 468 ENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERNDENWLK 547 (589)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccCchhhhc
Confidence 99999999999999998876542111 11224567888999999999999999999999999999999999999988888
Q ss_pred eeec
Q 006397 625 TIIL 628 (647)
Q Consensus 625 ~~~~ 628 (647)
++++
T Consensus 548 ~~~~ 551 (589)
T PRK08641 548 TTMA 551 (589)
T ss_pred eEEE
Confidence 7754
No 12
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=6.1e-90 Score=767.61 Aligned_cols=528 Identities=36% Similarity=0.574 Sum_probs=448.9
Q ss_pred CCccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCC
Q 006397 83 DGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 83 ~~~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~ 159 (647)
++.+.++||||||||.|||+||+.|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|++..+.++++
T Consensus 7 ~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d 86 (591)
T PRK07057 7 SLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGD 86 (591)
T ss_pred CcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCC
Confidence 34456799999999999999999999999 999999999888999999999987664 578999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccc-------cceeecCCCcHHHHHHHHHHHHHcCCCcEE
Q 006397 160 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISV 232 (647)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i 232 (647)
+++++.+++++++.++||+++|++|+...+|.+....+++|+. .|.++..+.+|..+...|.+.+.+ .|+++
T Consensus 87 ~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~-~gi~i 165 (591)
T PRK07057 87 QDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVA-AKTQF 165 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHh-cCCEE
Confidence 9999999999999999999999999988888776666777753 577777888999999999998887 59999
Q ss_pred EcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccc
Q 006397 233 FEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNME 312 (647)
Q Consensus 233 ~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~e 312 (647)
+.++.+++|+.+++| +|.||.+.+..+|+...|.|+.|||||||++.+|..++|+..++|||+.||+++||.+.|||
T Consensus 166 ~~~~~~~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me 242 (591)
T PRK07057 166 FVEWMALDLIRDADG---DVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDME 242 (591)
T ss_pred EeCcEEEEEEEcCCC---eEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcc
Confidence 999999999986556 89999998777788788999999999999999999999999999999999999999999999
Q ss_pred cccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC---
Q 006397 313 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE--- 388 (647)
Q Consensus 313 f~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~-~~~l~~rd~~~~~i~~~~~~~~~--- 388 (647)
|+||||+.+... .+++++.++++|++++|.+|+|||++|++ ..++.+||++++++..++.++.+
T Consensus 243 ~~q~~pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~ 310 (591)
T PRK07057 243 FWQFHPTGVAGA------------GVLITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGP 310 (591)
T ss_pred cccccCCccCCC------------ceEEeecccCCceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCC
Confidence 999999866421 46788999999999999999999999987 46899999999999999876432
Q ss_pred --ceEEEeCCCCChhHHHhhChhHHHHHHHc-CCCCCCCcEEEeeeeceecceeEeCCCCcc---------cccCccccc
Q 006397 389 --KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET---------NVRGLYVAG 456 (647)
Q Consensus 389 --~~v~lD~~~~~~~~~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T---------~ipGLyAaG 456 (647)
.++|+|.++.+.+.+..++|++.+++..+ |+||.++|+++.|.+||+||||+||.+++| +||||||||
T Consensus 311 ~~~~v~lD~~~~~~~~~~~~~~~i~e~~~~~~~~d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaG 390 (591)
T PRK07057 311 NGDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIG 390 (591)
T ss_pred CCCEEEEeCCCCCHHHHHHHccHHHHHHHHhcCCCCCCCCeeeehhHheeCCCeeECCCCcEeccccCCCCeeCCeEeCc
Confidence 46999999998888888999999999887 699999999999999999999999999998 799999999
Q ss_pred ccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhccc--ccccccccccccccCcccccccchhhhhcHHHHHHHHH
Q 006397 457 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS--IDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQ 534 (647)
Q Consensus 457 e~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 534 (647)
|++|+|+||+|||+||||++|+|||++||++|+++++... ..+... ...... . .............+.+++++||
T Consensus 391 E~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~ 467 (591)
T PRK07057 391 ECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDHVKKQHEHKPLPAD-AADFSL-A-RLAKLDKSTSGEYAQDVANDIR 467 (591)
T ss_pred cccccCCCccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCcchhhh-hhHHHH-H-HHhhhhccccccCHHHHHHHHH
Confidence 9998899999999999999999999999999998864321 011000 000000 0 0000000001124678899999
Q ss_pred HHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcc-cccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccC
Q 006397 535 SIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWE-QTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVD 613 (647)
Q Consensus 535 ~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D 613 (647)
++||+|+||+|++++|++||++|++|++++..+....... .+.++++++|++|||++|+++++|||.|+||||+|||+|
T Consensus 468 ~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D 547 (591)
T PRK07057 468 ATMQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSD 547 (591)
T ss_pred HHHHhcCCeEECHHHHHHHHHHHHHHHHHHHHhccCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCC
Confidence 9999999999999999999999999988876543211111 233568889999999999999999999999999999999
Q ss_pred CCCCccCCCCCeeecC
Q 006397 614 FPHVEENKRLPTIILP 629 (647)
Q Consensus 614 ~P~~~~~~~~~~~~~~ 629 (647)
||+++|++|.+++++.
T Consensus 548 ~P~~~d~~~~~~~~~~ 563 (591)
T PRK07057 548 YEHRDDENWLKHTLWY 563 (591)
T ss_pred CCCCCchhhcceEEEe
Confidence 9999988788776543
No 13
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=5.5e-90 Score=768.98 Aligned_cols=535 Identities=34% Similarity=0.501 Sum_probs=453.7
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
+.++||||||||+|||+||+.|++.| +|+||||....+|++.+++||+.+... +.|+++.|+.|+++.+.+++++++
T Consensus 10 ~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 10 DHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 45799999999999999999999999 999999999888999999999987655 478999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc--------ccceeecCCCcHHHHHHHHHHHHHcCCCcEEEc
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
++.+++++++.++||+++|++|+...+|.+....+++|+ .+|+++..+.+|..+...|.+.+.+ .||+|++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~-~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLK-HNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhh-cCCEEEE
Confidence 999999999999999999999998888877666677774 5788888888999999999999987 4999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccc
Q 006397 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~ 314 (647)
++.+++|+.+++| +|+||.+.+..+|+...|.|+.|||||||++++|..++++..++|||+.||+++||.+.||||+
T Consensus 169 ~~~v~~Li~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~~ 245 (598)
T PRK09078 169 EYFALDLIMDDGG---VCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFV 245 (598)
T ss_pred eEEEEEEEEcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCchh
Confidence 9999999987556 8999999877788888999999999999999999888999999999999999999999999999
Q ss_pred cccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----
Q 006397 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .+++++.++++|+++||.+|+||+++|++. .++.+||++++++..++.++.+
T Consensus 246 q~~pt~~~~~------------~~l~~e~~rg~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 313 (598)
T PRK09078 246 QFHPTGIYGA------------GCLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKK 313 (598)
T ss_pred eecccccCCC------------ceEEeecccCCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCC
Confidence 9999876421 467888999999999999999999999876 5899999999999999876532
Q ss_pred ceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCc----------ccccCcccccc
Q 006397 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----------TNVRGLYVAGE 457 (647)
Q Consensus 389 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----------T~ipGLyAaGe 457 (647)
..+|+|+++++.+.+.+++|.+...+.. .|+|+.++|++|.|.+||+||||.||.+++ |+|||||||||
T Consensus 314 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE 393 (598)
T PRK09078 314 DHIFLHLDHLDPEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGE 393 (598)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeeccc
Confidence 4699999999999999999998888877 699999999999999999999999999987 48999999999
Q ss_pred cccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhh-----hhcHHHHHHH
Q 006397 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNI-----LRRTKEVRKE 532 (647)
Q Consensus 458 ~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 532 (647)
|+|+|+||+|||+||+|++|+|||++||++|+++++....... . ... .... ....+..+ ...+.+++++
T Consensus 394 ~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~-~--~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 467 (598)
T PRK09078 394 AACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIKPGAPHPP-L--PKD-ACDK--ALDRFDRLRHANGGTPTAELRLK 467 (598)
T ss_pred ccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhhccCCCcc-c--chh-hHHH--HHHHHHHhhhccCCCCHHHHHHH
Confidence 9988999999999999999999999999999998643210000 0 000 0000 00000000 1246788899
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q 006397 533 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYM 611 (647)
Q Consensus 533 l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R 611 (647)
||++||+++||+|++++|++|+.+|++|++++..+.... ....++++++++|++||+++|+++++|||+|+||||+|||
T Consensus 468 l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R 547 (598)
T PRK09078 468 MQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAR 547 (598)
T ss_pred HHHHHhCCeeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhcc
Confidence 999999999999999999999999999998776532111 1123567888999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCeeecC-C-Cccccccccccc
Q 006397 612 VDFPHVEENKRLPTIILP-S-LVNCTWSSRQLH 642 (647)
Q Consensus 612 ~D~P~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 642 (647)
.|||++||++|.++++.. + ..+......|+.
T Consensus 548 ~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (598)
T PRK09078 548 EDFPDRDDENWMKHTLAWVDDKGKVKLDYRPVH 580 (598)
T ss_pred CCCCccCccccccEEEEEecCCCCceEEeccCc
Confidence 999999988888877643 2 233333444543
No 14
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.9e-89 Score=756.28 Aligned_cols=519 Identities=47% Similarity=0.755 Sum_probs=443.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
+.++||||||+|+|||+||+.|++..+|+||||....+|+|.+++||+++...+.|+++.|+.|++..+.+++++++++.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 85 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF 85 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence 45789999999999999999998744999999999888999999999998888889999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHcCCccccCCC--C--cccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006397 166 VCTEGPDRIRELIAIGASFDRGED--G--NLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDL 241 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~--g--~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l 241 (647)
+++++++.++||+++|++|++..+ | .+....+++|+.+|+++..+.+|..+...|.+.+.+.+||+|++++.+++|
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~L 165 (536)
T PRK09077 86 IAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAIDL 165 (536)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeee
Confidence 999999999999999999987654 3 455667889999999999888999999999998887679999999999999
Q ss_pred EecC-----CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccc
Q 006397 242 LTTL-----DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQF 316 (647)
Q Consensus 242 ~~~~-----~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~ 316 (647)
+.++ ++ +|+||.+.+..+|+...|.|+.||+||||++++|..++++..++|||+.||+++||.+.||||+||
T Consensus 166 i~~~~~~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~ 242 (536)
T PRK09077 166 ITSDKLGLPGR---RVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQF 242 (536)
T ss_pred eecccccCCCC---EEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcCcCccceeE
Confidence 9863 25 899999987777888889999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCC
Q 006397 317 HPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDIS 396 (647)
Q Consensus 317 ~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~ 396 (647)
||+.+..++ ...++++++++++|++++|.+|+|||++|++..+++|||+++++|..++...+..++|+|++
T Consensus 243 ~pt~~~~~~---------~~~~l~~e~~rg~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~g~~~v~ld~~ 313 (536)
T PRK09077 243 HPTCLYHPQ---------ARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHEMKRLGADCVYLDIS 313 (536)
T ss_pred ecceecCCC---------CCceeecHHHcCCCCEEECCCCCCcccccCcccccCchhHHHHHHHHHHHhcCCCeEEEECC
Confidence 999874321 11567889999999999999999999999998899999999999999988655568999999
Q ss_pred CCChhHHHhhChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHH
Q 006397 397 HKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLE 476 (647)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~ 476 (647)
+.+.+.+.+++|++.+.+...|+|+.++|++|.|.+||++|||+||.+++|+||||||||||+|+|+||+|||+||||++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~ 393 (536)
T PRK09077 314 HKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLE 393 (536)
T ss_pred CCcHHHHHHHChHHHHHHHHhCcCCCCCceeeeeeeeEecCCeeECCCCccccCCEEecccccccccCCCccchhhhHHH
Confidence 99888888899999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHH
Q 006397 477 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWR 556 (647)
Q Consensus 477 a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~ 556 (647)
|+|||++||++|+++......... ........... . ..+ ..+...+++||++||+|+||+|++++|++|+++
T Consensus 394 ~~vfG~~Ag~~aa~~~~~~~~~~~-~~~~~~~~~~~----~-~~~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~ 465 (536)
T PRK09077 394 CLVYGRSAAEDILSRLPKAPMPPT-LPAWDESRVTD----S-DEE--VVIQHNWHELRLFMWDYVGIVRTTKRLERALHR 465 (536)
T ss_pred HHHHHHHHHHHHHHhhcccCcccc-cchhhhhhhhc----c-ccc--cchhHHHHHHHHHHHhCCCEEECHHHHHHHHHH
Confidence 999999999999987532110000 00000000000 0 000 112345579999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee-cCC
Q 006397 557 IDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII-LPS 630 (647)
Q Consensus 557 l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~-~~~ 630 (647)
|++|++++..... .+. ...+++|++|||++|+++++|||.|+||||+|||.|||++|+++ .++++ .|+
T Consensus 466 l~~l~~~~~~~~~--~~~---~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~-~~~~~~~~~ 534 (536)
T PRK09077 466 IRLLQQEIDEYYA--NFR---VSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEA-GPTILSPPN 534 (536)
T ss_pred HHHHHHHHHHHhh--hcc---cCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCccccccc-CceEeecCC
Confidence 9999877653211 111 11356799999999999999999999999999999999999884 44443 444
No 15
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1e-89 Score=769.54 Aligned_cols=555 Identities=24% Similarity=0.344 Sum_probs=452.9
Q ss_pred ccCCCCCchhHhHhhhcccccccccCCCccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC-CCccccccCCee
Q 006397 57 RFNFSHSPVSENWKSLRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVS 134 (647)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~-~g~s~~a~Ggi~ 134 (647)
..++|..+..+.|....++.. ...+..+.++||||||||.|||+||+.|++.| +|+||||.... +|+|.+++||++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~ 83 (640)
T PRK07573 6 DAKIPEGPIEEKWDRYKFHLK--LVNPANKRKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGIN 83 (640)
T ss_pred cCCCCCCcchhhhhhcccccc--ccCCccccccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchH
Confidence 357888899999976554441 12233446799999999999999999999999 99999986554 467888889987
Q ss_pred eec---CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCC
Q 006397 135 AVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM 211 (647)
Q Consensus 135 ~~~---~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~ 211 (647)
+.. ...|+++.|+.|++..+.+++++++++.+++++++.++||+++|++|..+.++.+....+++|+.+|..+..+.
T Consensus 84 a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~ 163 (640)
T PRK07573 84 AAKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQ 163 (640)
T ss_pred hHhhccccCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCC
Confidence 654 25789999999999999999999999999999999999999999999887777666667789999999888777
Q ss_pred cHHHHH----HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCC
Q 006397 212 TGREIE----RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPST 287 (647)
Q Consensus 212 ~g~~~~----~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~ 287 (647)
+|..+. ..|.+.+++ .||+|++++.|++|+.+ ++ +|+||.+.+..+|+...|.|+.|||||||++++|..+
T Consensus 164 tG~~i~~~l~~~L~~~~~~-~gV~i~~~t~v~~Li~d-~g---~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~t 238 (640)
T PRK07573 164 TGQQLLLGAYQALSRQIAA-GTVKMYTRTEMLDLVVV-DG---RARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLS 238 (640)
T ss_pred CchhHHHHHHHHHHHHHHh-cCCEEEeceEEEEEEEe-CC---EEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCC
Confidence 887776 445556665 59999999999999986 56 8999999876678777899999999999999999989
Q ss_pred CCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCC-----------
Q 006397 288 TNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGM----------- 356 (647)
Q Consensus 288 ~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G----------- 356 (647)
+++..++|||+.||+++||.+.||||+||||+.+...+.. . ...++++++++++|++++|.+|
T Consensus 239 t~~~~~tGdGi~mA~~aGA~l~~me~vq~hPt~~~~~g~~----~--~~~~li~ea~rg~G~ilvn~~g~~~~~~~~~~~ 312 (640)
T PRK07573 239 TNAMGSNATAIWRAHKKGAYFANPCFTQIHPTCIPVSGDY----Q--SKLTLMSESLRNDGRIWVPKKKGDKRKPNDIPE 312 (640)
T ss_pred CCCCCcCcHHHHHHHHcCCCccCccceeeccccccCCCcc----c--ccceEEeccccCCceEEEcCccccccccccccc
Confidence 9999999999999999999999999999999977543210 0 0146889999999999999984
Q ss_pred -Cc--ccccccc-ccccCchhHHHHHHHHHHHhcCC-----ceEEEeCCC----CChhHHHhhChhHHHHHHH-cCCCCC
Q 006397 357 -ER--FMPLYDE-RAELAPRDVVARSIDDQLKKRNE-----KYVLLDISH----KPTEKILSHFPNIAAECLK-YGLDIT 422 (647)
Q Consensus 357 -~r--f~~~y~~-~~~l~~rd~~~~~i~~~~~~~~~-----~~v~lD~~~----~~~~~~~~~~~~~~~~~~~-~G~d~~ 422 (647)
+| ||.+|.+ .++++|||+++++|+.+++++++ .+||||+++ .+.+.+.++||.+.+.|.. .|+||.
T Consensus 313 ~~~~~f~~~~~~~~~el~~rd~v~rai~~e~~~grg~~~~~~~v~ld~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~ 392 (640)
T PRK07573 313 EERDYYLERRYPAFGNLVPRDVASRAAKERCDAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFDMYERITGENPY 392 (640)
T ss_pred chhhhchhhhCccccCCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEeCchhhhhcCHHHHHHhChHHHHHHHHhcCCCcc
Confidence 56 9987665 57999999999999999988643 369999985 5677789999999999887 599999
Q ss_pred CCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHH-HHHhhhcc-cc-cc
Q 006397 423 SQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP-SIDHKKST-SI-DL 499 (647)
Q Consensus 423 ~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~-a~~~~~~~-~~-~~ 499 (647)
++||||.|++||+||||+||.+++|+||||||||||+ +|+||||||+||||++|+|||++||++ |++|++.. .. ..
T Consensus 393 ~~~i~v~p~~hy~~GGi~vd~~~~T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~ 471 (640)
T PRK07573 393 ETPMRIYPAVHYTMGGLWVDYNLMSTIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKV 471 (640)
T ss_pred cCeeeeecccceecCCEEECCCCccccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccC
Confidence 9999999999999999999999999999999999995 799999999999999999999999988 66766432 10 00
Q ss_pred cc-cccccccccCcccccccchh---h--hhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhc--c
Q 006397 500 SA-SNWWTRTVVPKSLGCNVMHN---I--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFE--H 571 (647)
Q Consensus 500 ~~-~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~--~ 571 (647)
.. ...... ... ....++.. . ..++.+++++||++||+|+||+|++++|++|+++|++|++++.+.... .
T Consensus 472 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~ 548 (640)
T PRK07573 472 STDHPEFKE-AEA--EVQDRIDRLLNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGS 548 (640)
T ss_pred Cccccchhh-HHH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 00 000000 000 00000010 0 124678889999999999999999999999999999998776532211 1
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC------CCccCCCCCeeec
Q 006397 572 GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP------HVEENKRLPTIIL 628 (647)
Q Consensus 572 ~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P------~~~~~~~~~~~~~ 628 (647)
....++++++++|++||+++|+++++|||.|+||||+|||.||| ++||++|++++++
T Consensus 549 ~~~~~~~~~~~~el~n~l~~A~~i~~aAl~R~ESRG~H~R~D~P~~~~~~~~~d~~~~~~~~~ 611 (640)
T PRK07573 549 ADELNQELEKAGRVADFLELGELMCRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAW 611 (640)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCccCCCCccccccChhhhceEEEE
Confidence 11235678889999999999999999999999999999999999 6777667766654
No 16
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=5.3e-89 Score=760.71 Aligned_cols=522 Identities=36% Similarity=0.554 Sum_probs=446.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
.++||||||||+|||+||++|++..+|+||||....+|+|.+++||+++... +.|+++.++.|++..+.+++++++++
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v~ 83 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAAE 83 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHHH
Confidence 4689999999999999999998633999999999888889999999987664 57899999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccc-------cceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceE
Q 006397 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH-------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHF 237 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~-------~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~ 237 (647)
.+++++++.++||+++|++|++..+|.+....+++|+. +|.++..+.+|..+...|.+.+++ .||++++++.
T Consensus 84 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gv~i~~~~~ 162 (583)
T PRK08205 84 IMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVK-HGVEFFNEFY 162 (583)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHh-cCCEEEeCCE
Confidence 99999999999999999999988888777677777753 677777788899999999999987 4999999999
Q ss_pred EEEEEecCC---CCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccc
Q 006397 238 AIDLLTTLD---GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 238 v~~l~~~~~---g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~ 314 (647)
|++|+.+++ | +|+||.+.+..+|+...|.|+.|||||||++++|..+++++.++|||+.||+++||.+.||||+
T Consensus 163 v~~Li~~~~~~~g---~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~ 239 (583)
T PRK08205 163 VLDLLLTETPSGP---VAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFH 239 (583)
T ss_pred EEEEEecCCccCC---cEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccce
Confidence 999998643 6 8999998876778877899999999999999999989999999999999999999999999999
Q ss_pred cccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC-----
Q 006397 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE----- 388 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~-~~~l~~rd~~~~~i~~~~~~~~~----- 388 (647)
||||+.+... .+++++.++++|++++|.+|+||+++|++ ..++.+||++++++..++.++.+
T Consensus 240 q~~Pt~~~~~------------~~l~~e~~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~ 307 (583)
T PRK08205 240 QFHPTGLAGL------------GILISEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNK 307 (583)
T ss_pred EEecceecCC------------ceEeeecccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999876431 46788899999999999999999999987 46899999999999999876532
Q ss_pred ceEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCc------ccccCcccccccccC
Q 006397 389 KYVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACT 461 (647)
Q Consensus 389 ~~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~g 461 (647)
.++|+|.++++.+.+..++|.+.+.+.. .|+||.++++++.|.+||++|||+||.+++ |+|||||||||++|+
T Consensus 308 ~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~ 387 (583)
T PRK08205 308 DYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACV 387 (583)
T ss_pred CEEEEecccCChHHHHHHcchHHHHHHHHcCCCcCCCceEEEeeeeEECCCeeECCCceEecCCCCCcCCeeeccccccC
Confidence 3599999999999999999998888877 699999999999999999999999999998 689999999999988
Q ss_pred CCCCCCccCchhhHHHHHHHHHHHHHHHHhhhccc-cccccccc-ccccccCcccccccchhhhhcHHHHHHHHHHHHHh
Q 006397 462 GLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS-IDLSASNW-WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWR 539 (647)
Q Consensus 462 G~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 539 (647)
|+||+|||+||+|++|+|||++||++|+++++... .+...... ....... .... . .....+.+++++||++||+
T Consensus 388 g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~~~~~~~~lq~~m~~ 463 (583)
T PRK08205 388 SVHGANRLGTNSLLDINVFGRRAGIAAAEYARGADFVDLPENPEAMVVEWVE-DLLS-E--HGNERVADIRGELQQSMDN 463 (583)
T ss_pred CCCCCcCCchhhHHHHHHHHHHHHHHHHHHhhccCccCCchhhHHHHHHHHH-hhhc-c--CCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875321 11110000 0000000 0000 0 0013467789999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCc
Q 006397 540 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVE 618 (647)
Q Consensus 540 ~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~ 618 (647)
|+||+|++++|++||++|++|++++..+.... ....++++++++|++|||++|+++++|||.|+||||+|||.|||++|
T Consensus 464 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~ 543 (583)
T PRK08205 464 NASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRD 543 (583)
T ss_pred cCCEEECHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcC
Confidence 99999999999999999999998876542111 22345788999999999999999999999999999999999999999
Q ss_pred cCCCCCeeec
Q 006397 619 ENKRLPTIIL 628 (647)
Q Consensus 619 ~~~~~~~~~~ 628 (647)
|++|++++++
T Consensus 544 d~~~~~~~~~ 553 (583)
T PRK08205 544 DVNYMKHTMA 553 (583)
T ss_pred ccccceEEEE
Confidence 9888887764
No 17
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=100.00 E-value=4e-89 Score=760.86 Aligned_cols=526 Identities=27% Similarity=0.361 Sum_probs=441.1
Q ss_pred EEEECCcHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCCeeeecC---CCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G-~V~vlEk~~-~~~g~s~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
|||||+|+|||+||+.|++.| +|+||||.. ..+|++.+++||+.+..+ ..|+++.++.|+++.+.+++++++++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 799999999999999999999 999999998 556788889998876543 578999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcC---CCcEEEcceEEEEEE
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLL 242 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~---~gv~i~~~~~v~~l~ 242 (647)
+++++++.++||+++|++|+...+|.+....++++..+|+++..+.+|..+...|.+.+++. .||++++++.+++|+
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li 160 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDII 160 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEE
Confidence 99999999999999999999877777666678899999998887778988988887766542 489999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceecc
Q 006397 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~ 322 (647)
++++| +|+||.+.+..+|+...|.|+.|||||||++++|..++++..++|||+.||+++||.+.||||+||||+.+.
T Consensus 161 ~dd~g---rV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~Pt~~~ 237 (603)
T TIGR01811 161 VVDGN---RARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIP 237 (603)
T ss_pred EcCCC---EEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEEeeeec
Confidence 87556 899999987667877789999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCccceeeecccCCCcEEEeC------------CCCc--cccc-cccccccCchhHHHHHHHHHHHhcC
Q 006397 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNL------------GMER--FMPL-YDERAELAPRDVVARSIDDQLKKRN 387 (647)
Q Consensus 323 ~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~------------~G~r--f~~~-y~~~~~l~~rd~~~~~i~~~~~~~~ 387 (647)
..+.. ....++++++++++|++++|. +|+| ||.+ |+++++++|||+++++|..++.+++
T Consensus 238 ~~g~~------~~~~~li~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~ 311 (603)
T TIGR01811 238 VDGTW------QSKLRLMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGK 311 (603)
T ss_pred CCCcc------cccceEeeeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcC
Confidence 42210 001367899999999999999 9999 8864 6667899999999999999998753
Q ss_pred -----CceEEEeCCCCCh----hHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccc
Q 006397 388 -----EKYVLLDISHKPT----EKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGE 457 (647)
Q Consensus 388 -----~~~v~lD~~~~~~----~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe 457 (647)
+.+||||+++++. +.+.++||.+.+.+.+ .|+|+.++||||.|++||+||||+||.+++|+|||||||||
T Consensus 312 g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~t~i~gL~a~Ge 391 (603)
T TIGR01811 312 GVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGE 391 (603)
T ss_pred CcCCCCCeEEEEcCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCcccCCCEEECcc
Confidence 2469999999987 7889999999999987 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcc--cccccchhh-----hhcHHHHH
Q 006397 458 VACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKS--LGCNVMHNI-----LRRTKEVR 530 (647)
Q Consensus 458 ~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~ 530 (647)
|+ +|+||+|||+||||++|+|||++||++|++|+............ ........ ....++..+ ...+.+++
T Consensus 392 ~~-~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (603)
T TIGR01811 392 CD-FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPE-DAPEFQAALAEEQERFDRLLKMRGDENPYYLH 469 (603)
T ss_pred cc-cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-ccchhhhHHHHHHHHHHHHhhccCCCCHHHHH
Confidence 97 79999999999999999999999999999986432100000000 00000000 000000100 12467889
Q ss_pred HHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccC--cccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 006397 531 KELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL 608 (647)
Q Consensus 531 ~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 608 (647)
++||++||+|+||+|++++|++||++|++|++++.+.+...+ ...+.++++++|++|||++|+++++|||+|+||||+
T Consensus 470 ~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~ 549 (603)
T TIGR01811 470 RELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDALNRNESCGA 549 (603)
T ss_pred HHHHHHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 999999999999999999999999999999988754221111 123457788999999999999999999999999999
Q ss_pred ccccCCC------CCccCCCCCeee
Q 006397 609 HYMVDFP------HVEENKRLPTII 627 (647)
Q Consensus 609 h~R~D~P------~~~~~~~~~~~~ 627 (647)
|||+||| ++||++|.++++
T Consensus 550 H~R~D~P~~~~~~~~~d~~~~~~~~ 574 (603)
T TIGR01811 550 HFRPEFPTPDGEAERNDEEFLKVTA 574 (603)
T ss_pred cccccCCCccccccCChhhhheeEE
Confidence 9999999 778877777765
No 18
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.1e-88 Score=761.29 Aligned_cols=543 Identities=34% Similarity=0.466 Sum_probs=453.4
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC---CCCCHHHHHHHHHHhcCCCCCHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
+.++||||||+|+||++||+.|++.| +|+||||....+|+|.+++||+++..+ ..|+++.++.|+++.+.++++++
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 35799999999999999999999999 999999999888899999999987754 46899999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCC-------C-----
Q 006397 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDP-------N----- 229 (647)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~-------g----- 229 (647)
+++.+++++++.++||+++|++|+...+|.+....+++|+++|+++..+.+|..+...|.+.+.+.. |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 9999999999999999999999998888887777889999999999888899999999999887642 5
Q ss_pred cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeec
Q 006397 230 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVIS 309 (647)
Q Consensus 230 v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~ 309 (647)
|++++++.|++|+.+ ++ +|.||.+.+..+|+...|.|+.||+||||++.+|+.++++..++|||+.||+++||.+.
T Consensus 166 v~i~~~~~v~~L~~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~ 241 (626)
T PRK07803 166 IKVFAECTITELLKD-GG---RIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLI 241 (626)
T ss_pred eEEEeCCEEEEEEEE-CC---EEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHcCCcEe
Confidence 999999999999986 56 89999988767788888999999999999999999999999999999999999999999
Q ss_pred ccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-----------------------
Q 006397 310 NMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER----------------------- 366 (647)
Q Consensus 310 ~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~----------------------- 366 (647)
+|||+||||+.+..+. . ...++++++++++|++++|.+|+|||++|++.
T Consensus 242 ~me~~q~~Pt~~~~~~-----~---~~~~li~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (626)
T PRK07803 242 NMEFVQFHPTGMVWPP-----S---VKGILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNN 313 (626)
T ss_pred CCcceeecccccccCC-----C---cCceEEeeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhccccc
Confidence 9999999998774211 0 12578899999999999999999999988754
Q ss_pred ---cccCchhHHHHHHHHHHHhcCC---ceEEEeC-CCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecce
Q 006397 367 ---AELAPRDVVARSIDDQLKKRNE---KYVLLDI-SHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGG 438 (647)
Q Consensus 367 ---~~l~~rd~~~~~i~~~~~~~~~---~~v~lD~-~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GG 438 (647)
.++.|||++++++..++.++++ +.+|+|+ ++++.+.+.+++|.+++.+.+ .|+|+.++|+++.|.+||+|||
T Consensus 314 ~~~~~l~prd~v~~ai~~e~~~g~g~~~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GG 393 (626)
T PRK07803 314 RRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGG 393 (626)
T ss_pred ccccccccHHHHHHHHHHHHHhcCCCCCCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCC
Confidence 5788999999999999987642 3499999 789989999999997777766 6999999999999999999999
Q ss_pred eEeCCCC-cccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhccccccc-ccccccccccCccccc
Q 006397 439 VRAGLQG-ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLS-ASNWWTRTVVPKSLGC 516 (647)
Q Consensus 439 i~vD~~~-~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 516 (647)
|+||.++ +|+||||||||||+ +|+||+|||+||||++|+|||++||++|+++++....... ......... . .. .
T Consensus 394 i~vd~~~~~t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~-~-~~-~ 469 (626)
T PRK07803 394 VEVDPDTGAATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDAAA-R-EA-L 469 (626)
T ss_pred EEEcCCCCeeecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHHHH-H-HH-H
Confidence 9999986 69999999999997 6999999999999999999999999999998753211000 000000000 0 00 0
Q ss_pred ccchhh--hhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHH
Q 006397 517 NVMHNI--LRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKL 594 (647)
Q Consensus 517 ~~~~~~--~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 594 (647)
..+... ...+.+++++||++||+++||+|++++|++||++|++|++++..+........+.++..++|++|||++|++
T Consensus 470 ~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~ 549 (626)
T PRK07803 470 APFERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGHRQYNPGWHLALDLRNMLLVSEC 549 (626)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHhHHHHHHH
Confidence 000000 134677889999999999999999999999999999999887654221111123345678999999999999
Q ss_pred HHHHHHhcccCcccccccCCCCCccCCCCCeeecC---CCccccccccccccC
Q 006397 595 VVSSALARHESRGLHYMVDFPHVEENKRLPTIILP---SLVNCTWSSRQLHKL 644 (647)
Q Consensus 595 ~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 644 (647)
+++|||+|+||||+|||.|||++|++|++++++.+ ++.+....+.|+...
T Consensus 550 ~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 602 (626)
T PRK07803 550 VARAALERTESRGGHTRDDHPGMDPEWRRINLVCRADPVGGHVTVTRQPQPPM 602 (626)
T ss_pred HHHHHHhCCCCcccEeCCCCCccChhhhceEEEEecCCCCCceEEEEccCCCc
Confidence 99999999999999999999999976655555433 344655556655544
No 19
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.2e-88 Score=758.67 Aligned_cols=526 Identities=37% Similarity=0.544 Sum_probs=451.2
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC----CeEEEEecCCCCCccccccCCeeeecCC--CCCHHHHHHHHHHhcCCCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLC 158 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G----~V~vlEk~~~~~g~s~~a~Ggi~~~~~~--~d~~~~~~~~~~~~g~~~~ 158 (647)
.+.++||||||||+|||+||+.|++.| +|+||||....++++.+++||+++.... .|+++.++.|+++.+.+++
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 345799999999999999999999986 8999999999889999999999877654 6899999999999999999
Q ss_pred CHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006397 159 DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
++++++.+++++++.++||+++|++|+..++|.+....+++++++|+.+..+.+|..+...|.+.+.+..||++++++.+
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v 161 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFV 161 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEE
Confidence 99999999999999999999999999988888877778899999999998888999999999998876569999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccc
Q 006397 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 318 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p 318 (647)
++|+.+ ++ +|+||.+.+..+|+...|.|+.||+||||++++|..++++..++|||+.||+++||.+.||||+||||
T Consensus 162 ~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~~q~~p 237 (577)
T PRK06069 162 TSLIVE-NG---VFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHP 237 (577)
T ss_pred EEEEEE-CC---EEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcceeEee
Confidence 999986 56 89999988766787778999999999999999999888888999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-------ce
Q 006397 319 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-------KY 390 (647)
Q Consensus 319 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~-------~~ 390 (647)
+.+... .+++++.++++|++++|.+|+||+++|+|. .++.+||++++++.+++.++++ .+
T Consensus 238 t~~~~~------------g~l~~e~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~ 305 (577)
T PRK06069 238 TGLVPS------------GILITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCY 305 (577)
T ss_pred eeeCCC------------CcEEEeeccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceE
Confidence 877532 457889999999999999999999999874 6899999999999999876542 35
Q ss_pred EEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCccc------ccCcccccccccCCC
Q 006397 391 VLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGETN------VRGLYVAGEVACTGL 463 (647)
Q Consensus 391 v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~------ipGLyAaGe~a~gG~ 463 (647)
+|+|.++.+.+.+.+++|++.+++.+ .|+|+.+++++|.|..||++|||+||.+++|+ ||||||||||+|+|+
T Consensus 306 v~ld~~~~~~~~~~~~~~~i~~~~~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~~g~~I~GLyAaGE~a~~g~ 385 (577)
T PRK06069 306 VGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSV 385 (577)
T ss_pred EEEecccCCHHHHHHHhhHHHHHHHHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCCCCCEeCCeEeccccccccc
Confidence 89999999888888999999999988 69999999999999999999999999999998 999999999997799
Q ss_pred CCCCccCchhhHHHHHHHHHHHHHHHHhhhcccc-cccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCc
Q 006397 464 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSI-DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 542 (647)
Q Consensus 464 ~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 542 (647)
||+||++||+|++|+|||++||++|++++++... ............... .......+....+.+++++||++||+|+|
T Consensus 386 hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 464 (577)
T PRK06069 386 HGANRLGSNSTAECLVWGRIAGEQAAEYALKRPAPSSPVEKLAEKEEKRI-FDKLLKKEGGEPSYEIRRELNDIMDKNFG 464 (577)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCcchhhhhHHHHHH-HhhhhhccCCCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998754211 000000000000000 00000000113467888999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCC
Q 006397 543 IVRSTTSLQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 621 (647)
Q Consensus 543 ~~r~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~ 621 (647)
|+|++++|++||++|++|++++..+..... ...++++++++|++||+++|+++++|||.|+||||+|||+|||++||++
T Consensus 465 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~ 544 (577)
T PRK06069 465 IFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDEN 544 (577)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCchh
Confidence 999999999999999999987765321111 1235788999999999999999999999999999999999999999877
Q ss_pred CCCeee
Q 006397 622 RLPTII 627 (647)
Q Consensus 622 ~~~~~~ 627 (647)
|.++++
T Consensus 545 ~~~~~~ 550 (577)
T PRK06069 545 WLKHTL 550 (577)
T ss_pred hhceEE
Confidence 777665
No 20
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.1e-88 Score=757.71 Aligned_cols=523 Identities=33% Similarity=0.553 Sum_probs=445.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCCeeeec---CCCCCHHHHHHHHHHhcCCCCCH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s~~a~Ggi~~~~---~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
.++||||||||+|||+||+.|++. | +|+||||....+|++.+++||+.+.. .+.|+++.++.|++..+.+++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 468999999999999999999986 5 89999999888888989999987665 35689999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006397 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||+++|++|+..++|.+....++++..+|.++..+.+|..+...|.+.+++ .||++++++.|++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~t~v~~ 160 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRR-YGVTIYDEWYVMR 160 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHhh-CCCEEEeCcEEEE
Confidence 999999999999999999999999998888777777899999999999888999999999999987 5999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeeccccccccccee
Q 006397 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTA 320 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~ 320 (647)
|+.+ ++ +|.|+.+.+..+|+...|.|+.||+||||++++|..++++..++|||+.||+++||.+.||||+||||+.
T Consensus 161 L~~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf~pt~ 236 (575)
T PRK05945 161 LILE-DN---QAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFHPTG 236 (575)
T ss_pred EEEE-CC---EEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEEeeee
Confidence 9986 56 8999998776778777899999999999999999888999999999999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC---------ce
Q 006397 321 LADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---------KY 390 (647)
Q Consensus 321 ~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~---------~~ 390 (647)
+... .+++++.++++|++++|.+|+||+++|++. .++.+||++++++.+++.++++ ..
T Consensus 237 ~~~~------------~~l~~~~~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~ 304 (575)
T PRK05945 237 LYPV------------GVLISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPF 304 (575)
T ss_pred ecCC------------CeEEeeecccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCE
Confidence 6421 467888899999999999999999999884 5899999999999999876432 35
Q ss_pred EEEeCCCCChhHHHhhChhHHHHHH-HcCCCCCCCcEEEeeeeceecceeEeCCCCcc------cccCcccccccccCCC
Q 006397 391 VLLDISHKPTEKILSHFPNIAAECL-KYGLDITSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGL 463 (647)
Q Consensus 391 v~lD~~~~~~~~~~~~~~~~~~~~~-~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T------~ipGLyAaGe~a~gG~ 463 (647)
+|+|+++.+.+.+..++|.+.+.+. ..|+|+.+++++|.|.+||+||||+||.+++| +|||||||||++|+|+
T Consensus 305 v~ld~~~~~~~~~~~~~~~~~~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~~~t~I~GLyAaGE~a~~g~ 384 (575)
T PRK05945 305 VYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSV 384 (575)
T ss_pred EEEECCCCCHHHHHHHhHHHHHHHHHHhCcCCCCceEEeeccceecCCCeeECCCceeccCCCCccCCeEeeeccccccc
Confidence 9999999988888888886555554 47999999999999999999999999999986 7999999999998899
Q ss_pred CCCCccCchhhHHHHHHHHHHHHHHHHhhhccccc-ccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCc
Q 006397 464 HGANRLASNSLLEALVFARRAVQPSIDHKKSTSID-LSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVG 542 (647)
Q Consensus 464 ~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 542 (647)
||+|||+||+|++|+|||++||++|+++++..... ........... ..............+.+++++||++||+|+|
T Consensus 385 hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g 462 (575)
T PRK05945 385 HGANRLGSNSLLECVVYGRRTGAAIAEYVQGRKLPEVDEQRYLKEAK--QRIQALLDQSGTYRINQLRQQFQDCMTDHCG 462 (575)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHH--HHHhhhhccccccChHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999987543211 00000000000 0000000000112467889999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCC
Q 006397 543 IVRSTTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 621 (647)
Q Consensus 543 ~~r~~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~ 621 (647)
|+|++++|++|+++|++|++++..+.... ....++++++++|++|||++|+++++|||+|+||||+|||.|||++||++
T Consensus 463 i~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~ 542 (575)
T PRK05945 463 VFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQN 542 (575)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCchh
Confidence 99999999999999999998876532211 12235788999999999999999999999999999999999999999988
Q ss_pred CCCeeec
Q 006397 622 RLPTIIL 628 (647)
Q Consensus 622 ~~~~~~~ 628 (647)
|.+++++
T Consensus 543 ~~~~~~~ 549 (575)
T PRK05945 543 FLKHTLA 549 (575)
T ss_pred hhceEEE
Confidence 8887753
No 21
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.3e-87 Score=739.88 Aligned_cols=507 Identities=45% Similarity=0.657 Sum_probs=439.6
Q ss_pred CccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 84 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 84 ~~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
..+.++||||||+|+|||+||+.|++.| +|+||||....+|+|.+++||+++..++.|+++.|+.|++..+.+++++++
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~ 91 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDA 91 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHH
Confidence 3456799999999999999999999999 999999999988899999999998888889999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeec-CCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDL 241 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l 241 (647)
++.+++++++.++||+++|++|+...+|.+....+++|..+|+.+. .+.+|..+...|.+.+++. +|++++++.|++|
T Consensus 92 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~-gV~i~~~~~v~~L 170 (541)
T PRK07804 92 VRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRAD-PLDIREHALALDL 170 (541)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhC-CCEEEECeEeeee
Confidence 9999999999999999999999988888877777889998888877 4678999999999999875 8999999999999
Q ss_pred EecCCCCCceEEEEEEEecC---CCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccc
Q 006397 242 LTTLDGPDAVCHGVDTLNVE---TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 318 (647)
Q Consensus 242 ~~~~~g~~~~v~Gv~~~~~~---~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p 318 (647)
+.+++| +|+||.+.+.. ++....|.|+.||+||||++.+|..++++..+||||+.||+++|+.+.||||+||||
T Consensus 171 i~~~~g---~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~q~~p 247 (541)
T PRK07804 171 LTDGTG---AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHP 247 (541)
T ss_pred EEcCCC---eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCcceeEec
Confidence 987556 89999887421 222457999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCC
Q 006397 319 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHK 398 (647)
Q Consensus 319 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~ 398 (647)
+.+..+.. .....+++++.++++|++++|.+|+|||++|++..|+.|||++++++..++.+.+..++|+|.++
T Consensus 248 t~~~~~~~------~~~~~~l~~~~~r~~g~~lvn~~G~RF~~~~~~~~E~a~rd~v~~ai~~~~~~~g~~~v~lD~~~- 320 (541)
T PRK07804 248 TVLFLGPA------AGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDRRMKATGDDHVYLDARG- 320 (541)
T ss_pred ceecCCcc------cccccceechhhcCCceEEECCCCCCCccccCcccccCcHHHHHHHHHHHHHhcCCCEEEEeCcc-
Confidence 87753210 01114678889999999999999999999999988999999999999999876545689999884
Q ss_pred ChhHHHhhChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHH
Q 006397 399 PTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 478 (647)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~ 478 (647)
.+.+..++|++.+++.+.|+|+.+++++|.|..||++|||+||++++|+|||||||||++|+|+||+||++|+++++++
T Consensus 321 -~~~~~~~~p~i~~~~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~ 399 (541)
T PRK07804 321 -IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVTDVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGL 399 (541)
T ss_pred -HHHHHHHhhHHHHHHHHhCcCCcCCeEEEEHHHhhcCCCEEECCCCcccCCCeEEcccccccccCCCcccHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHH
Q 006397 479 VFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRID 558 (647)
Q Consensus 479 v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~ 558 (647)
+||++||++|+++...... ... ... +. ......+.+++++||++||+++||+|++++|++|+.+|+
T Consensus 400 v~G~~ag~~aa~~~~~~~~--~~~--~~~---~~-------~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~ 465 (541)
T PRK07804 400 VVGERAGAAAAAHAAAAGR--PRA--TPA---VG-------PEPGLLPALDRAELQRAMTRGAGVLRSAAGLARAADRLA 465 (541)
T ss_pred HHHHHHHHHHHHhhcccCc--ccc--chh---hc-------ccccCchHHHHHHHHHHHHhcCCeEEcHHHHHHHHHHHH
Confidence 9999999999887532211 000 000 00 011124677889999999999999999999999999998
Q ss_pred HHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006397 559 ELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 559 ~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~ 628 (647)
++.... .+++...+|++|||++|+++++|||.|+||||+|||+|||++|| +|.+++++
T Consensus 466 ~~~~~~-----------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~-~~~~~~~~ 523 (541)
T PRK07804 466 AGAPAR-----------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDD-EWARSIVV 523 (541)
T ss_pred HHHhhc-----------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccCh-hhhceEEE
Confidence 864311 12346778999999999999999999999999999999999999 56666654
No 22
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=9.3e-87 Score=731.70 Aligned_cols=487 Identities=41% Similarity=0.581 Sum_probs=427.7
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC-CCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~-~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
.+.++||||||+|+|||+||+.|+ | +|+||||... .+|+|.+++||+++..++.|+++.|+.|+++.+.+++++++
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~ 83 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV 83 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 356799999999999999999997 6 9999999987 56788899999998888889999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeec-CCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEE
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDL 241 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~-~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l 241 (647)
++.+++++++.++||+++|++|+...+|.+....+++|+.+|+++. .+.+|..+...|.+.+++..||++++++.|++|
T Consensus 84 v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~L 163 (513)
T PRK07512 84 AALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRL 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhe
Confidence 9999999999999999999999988888777777889999998887 467899999999999876569999999999999
Q ss_pred EecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceec
Q 006397 242 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 321 (647)
Q Consensus 242 ~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~ 321 (647)
+.+ ++ +|+||.+.+ +++...|.|+.||+||||++++|..++++..+||||+.||+++||.+.+|||+||||+.+
T Consensus 164 i~~-~g---~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~Pt~~ 237 (513)
T PRK07512 164 LVD-DG---AVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAI 237 (513)
T ss_pred eec-CC---EEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcceEEEeeee
Confidence 876 56 899998875 344557999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChh
Q 006397 322 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE 401 (647)
Q Consensus 322 ~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~ 401 (647)
...+. ..+++++.++++|++++|.+|+||+++|++..++.+||++++++.+++.++ ..+|+|.++.+.+
T Consensus 238 ~~~~~---------~~~l~~~~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~g--~~v~ld~~~~~~~ 306 (513)
T PRK07512 238 DIGRD---------PAPLATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIAAG--RGAFLDARAALGA 306 (513)
T ss_pred cCCCC---------CcceeehhhhCCceEEECCCCCChhhhcCCccccCcHHHHHHHHHHHHhcC--CEEEEeccccchH
Confidence 53211 146788899999999999999999999998889999999999999998765 4689999998877
Q ss_pred HHHhhChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHH
Q 006397 402 KILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFA 481 (647)
Q Consensus 402 ~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G 481 (647)
.+..++|++.+++.+.|+|+.+++++|.|..||++|||+||.+++|+||||||||||+|+|+||+||++||||++|+|||
T Consensus 307 ~~~~~~~~i~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G 386 (513)
T PRK07512 307 HFATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFA 386 (513)
T ss_pred HHHHHhhHHHHHHHHhCcCCCCCceEEecccCEEcCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHH
Q 006397 482 RRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 561 (647)
Q Consensus 482 ~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~ 561 (647)
++||++|+++...... +..+.. . . ..+.+..++||++||+|+||+|++++|++||.+|++|+
T Consensus 387 ~~ag~~aa~~~~~~~~----------~~~~~~---~---~--~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~ 448 (513)
T PRK07512 387 ARAAEDIAGTPAAAAA----------PLSAAA---A---P--ALDPADLALLRPIMSRHVGVLRDADGLRRAIAALLPLE 448 (513)
T ss_pred HHHHHHHHHHhhcccc----------cccccc---c---c--cccHHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHH
Confidence 9999999987533210 000000 0 0 11234557899999999999999999999999999997
Q ss_pred HHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee
Q 006397 562 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 627 (647)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~ 627 (647)
++.. +++||+++|+++++|||.|+||||+|||+|||++|++ |.++++
T Consensus 449 ~~~~------------------~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~-~~~~~~ 495 (513)
T PRK07512 449 AGAG------------------PAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA-ARRTRL 495 (513)
T ss_pred HHHH------------------HHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh-hcceEE
Confidence 5421 3579999999999999999999999999999999988 555554
No 23
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=5e-86 Score=733.11 Aligned_cols=520 Identities=38% Similarity=0.590 Sum_probs=445.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC-CCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP-HESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~-~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
+.++||||||+|.|||+||+.| +.| +|+||||... .+|++.+++|++++...+.|+++.++.|++..+.+++|++++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 4578999999999999999999 889 9999999875 467788899999888888899999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.+++++++.++||+++|++|....+|.+.....+++.++|.++..+.+|..+...|.+.+++ .||++++++.+++|+.
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIK-ERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhc-CCCEEEeCeEeeeeEE
Confidence 999999999999999999999988888776667788999999888888899999999998887 5999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccC
Q 006397 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~ 323 (647)
++++ +|+||.+.+..+|+...|.|+.||+||||++.+|+.+++++.++|||+.||+++||.+.+|||+||||+.+..
T Consensus 163 ~~~~---~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~p~~~~~ 239 (543)
T PRK06263 163 DENR---EVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGMVY 239 (543)
T ss_pred eCCc---EEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEecceecc
Confidence 7444 6999998875678777899999999999999999989999999999999999999999999999999987642
Q ss_pred CCCCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC---ceEEEeCCCCC
Q 006397 324 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE---KYVLLDISHKP 399 (647)
Q Consensus 324 ~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~-~~~l~~rd~~~~~i~~~~~~~~~---~~v~lD~~~~~ 399 (647)
+.. ...+++++.+++.|++++|.+|+||+++|++ ..++.+|+++++++.+++..+++ ..+|+|.++++
T Consensus 240 ~~~--------~~~~~~~~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~~~~~~~ld~~~~~ 311 (543)
T PRK06263 240 PYS--------GRGILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTNHGGVYLDVTHLP 311 (543)
T ss_pred CCC--------CCceEEeeeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCCCceEEEECCCCC
Confidence 210 1146778888899999999999999999988 46899999999999999876542 34999999999
Q ss_pred hhHHHhhChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHH
Q 006397 400 TEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV 479 (647)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v 479 (647)
.+.+.+.+|.+.+.+.+.|+|+.++|+++.|..|+++|||+||++++|+|||||||||++ +|+||+||++||+|++|+|
T Consensus 312 ~~~l~~~~~~~~~~~~~~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~t~IpGLyAaGE~~-gg~hG~~rlgG~sl~~a~v 390 (543)
T PRK06263 312 DEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINEDCETNIPGLFACGEVA-GGVHGANRLGGNALADTQV 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCEEEeccccEecCCEEECCCCcccCCCeEeccccc-cCCCCCCccchhhhhhhHH
Confidence 888888888877777778999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCcccccccc--hhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHH
Q 006397 480 FARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVM--HNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRI 557 (647)
Q Consensus 480 ~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l 557 (647)
||++||++|+++++..... .......... .... ..+ ......+.+++++||++||+++|++|++++|++||.+|
T Consensus 391 ~Gr~Ag~~aa~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l 466 (543)
T PRK06263 391 FGAIAGKSAAKNAENNEFK-KVNRSVEEDI--ARIK-SEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEI 466 (543)
T ss_pred HHHHHHHHHHHHhhhcCCC-cchhhhhhhH--HHHH-HHhhhcccCCCHHHHHHHHHHHHHhhCcEEEcHHHHHHHHHHH
Confidence 9999999999987543210 0000000000 0000 000 00123577899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006397 558 DELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 558 ~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~ 628 (647)
++|++++..+. ..+.+++++++|++||+++|+++++|||+|+||||+|||.|||++|| +|.+++++
T Consensus 467 ~~l~~~~~~~~----~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~-~~~~~~~~ 532 (543)
T PRK06263 467 NELKEKLKDLK----VNGIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETND-EWFGNIIL 532 (543)
T ss_pred HHHHHHHHhcc----cccchhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccCh-hhcCeEEe
Confidence 99998876532 23467789999999999999999999999999999999999999998 56666654
No 24
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=100.00 E-value=4.7e-86 Score=738.91 Aligned_cols=520 Identities=40% Similarity=0.595 Sum_probs=445.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC---CCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~---~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
||||||||+||++||+.|++.| +|+||||....+|++.+++||+.+... +.|+++.++.|++..+.+++++++++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999 999999999888888899999887653 568899999999999999999999999
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+++++++.++||+++|++|+...+|.+....++++..++..+..+.+|..+...|.+.+++. ||++++++.+++|+.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~-gv~i~~~~~v~~L~~~- 158 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-GVSFFNEYFALDLIHD- 158 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHHHc-CCEEEeccEEEEEEEe-
Confidence 99999999999999999999888887666678889988988888888999999999998875 9999999999999986
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCC
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g 325 (647)
+| +|+||.+.+..+|+...|.|+.||+||||++.+|..+++++.++|||+.|++++||.+.||||+||||+.+...
T Consensus 159 ~g---~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~~~~- 234 (566)
T TIGR01812 159 DG---RVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPS- 234 (566)
T ss_pred CC---EEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeeeCCC-
Confidence 56 89999988766787778999999999999999999888999999999999999999999999999999876421
Q ss_pred CCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccccc-ccccCchhHHHHHHHHHHHhcCC------ceEEEeCCCC
Q 006397 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDE-RAELAPRDVVARSIDDQLKKRNE------KYVLLDISHK 398 (647)
Q Consensus 326 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~-~~~l~~rd~~~~~i~~~~~~~~~------~~v~lD~~~~ 398 (647)
.+++++.+++.|++++|.+|+|||++|++ ..++.+||++++++.+++.++++ .++|+|+++.
T Consensus 235 -----------~~~~~e~~~~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~ 303 (566)
T TIGR01812 235 -----------GILITEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHL 303 (566)
T ss_pred -----------CcEEeccccCCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCC
Confidence 35678889999999999999999999987 46899999999999999876432 3699999999
Q ss_pred ChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCc----ccccCcccccccccCCCCCCCccCchh
Q 006397 399 PTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE----TNVRGLYVAGEVACTGLHGANRLASNS 473 (647)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~----T~ipGLyAaGe~a~gG~~Ga~rl~g~s 473 (647)
+.+.+..++|++.+++.+ .|+|+.++++++.|..||++|||+||.+++ |+|||||||||++|+|+||+||++||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~s 383 (566)
T TIGR01812 304 GEEKIEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICETIVKGLFAAGECACVSVHGANRLGGNS 383 (566)
T ss_pred CHHHHHHHchHHHHHHHHHcCCCCCCCceeeehhhcccCCCeEECcCcccccCcccCCeeecccccccCcCcccccchhh
Confidence 888888899999999988 599999999999999999999999999999 999999999999988999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch--hhhhcHHHHHHHHHHHHHhcCccccCHHHHH
Q 006397 474 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH--NILRRTKEVRKELQSIMWRYVGIVRSTTSLQ 551 (647)
Q Consensus 474 l~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~ 551 (647)
|++|+|||++||++|+++++....+..... .............+. .....+.+++++||++||+|+||+|++++|+
T Consensus 384 l~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~ 461 (566)
T TIGR01812 384 LLELVVFGRIAGEAAAEYAAKTGNPAADIE--EEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLK 461 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccc--hhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHH
Confidence 999999999999999998754221100000 000000000000000 0113467788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc-cCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006397 552 TAEWRIDELEAEWETYLFE-HGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 552 ~al~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~ 628 (647)
+|+++|++|++++..+... ...+.+++++.++|++||+++|+++++|||+|+||||+|||.|||++|+++|.+++++
T Consensus 462 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~ 539 (566)
T TIGR01812 462 KAVDEIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLA 539 (566)
T ss_pred HHHHHHHHHHHHHHhhcccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcccccceEEE
Confidence 9999999998877653211 1222357788999999999999999999999999999999999999999888887764
No 25
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3e-86 Score=734.93 Aligned_cols=510 Identities=36% Similarity=0.537 Sum_probs=436.9
Q ss_pred HHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec---CCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHH
Q 006397 101 LCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRE 176 (647)
Q Consensus 101 l~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~---~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (647)
|+||+++++.| +|+||||....+|+|.+++||+++.. .+.|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999 99999999998999999999998776 467899999999999999999999999999999999999
Q ss_pred HHHcCCccccCCCCcccccccCCccc--------cceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006397 177 LIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 177 l~~~G~~~~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
|+++|++|++..+|.+....+++|+. +|+++..+.+|..+...|.+.+.+ .||++++++.+++|+.+++|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~~~g- 158 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLK-NGTTFLNEWYAVDLVKNQDG- 158 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhc-cCCEEEECcEEEEEEEcCCC-
Confidence 99999999998888887777788754 588898888999999999999987 49999999999999986567
Q ss_pred CceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCC
Q 006397 249 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 328 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~ 328 (647)
+|+||.+.+..+|+...|.|++|||||||++++|..+++++.+||||++||+++||.+.||||+||||+.+...
T Consensus 159 --~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~---- 232 (570)
T PRK05675 159 --AVVGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGA---- 232 (570)
T ss_pred --eEEEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCC----
Confidence 99999998877899889999999999999999999999999999999999999999999999999999877431
Q ss_pred CCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----ceEEEeCCCCChhH
Q 006397 329 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEK 402 (647)
Q Consensus 329 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~-----~~v~lD~~~~~~~~ 402 (647)
.++++++++++|++++|.+|+|||++|++. .++.+||+++++|..++..+.+ ..+|+|.++++.+.
T Consensus 233 --------~~l~~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~ 304 (570)
T PRK05675 233 --------GVLVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEV 304 (570)
T ss_pred --------ceEeeccccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHH
Confidence 467888999999999999999999999876 5899999999999999876532 35999999999988
Q ss_pred HHhhChhHHHHHHHc-CCCCCCCcEEEeeeeceecceeEeCCCCcc----------cccCcccccccccCCCCCCCccCc
Q 006397 403 ILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLAS 471 (647)
Q Consensus 403 ~~~~~~~~~~~~~~~-G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T----------~ipGLyAaGe~a~gG~~Ga~rl~g 471 (647)
+..+||.+.+.+..+ |+||.++|++|.|.+||+||||+||.+++| +||||||||||+|+|+||+|||+|
T Consensus 305 l~~~~~~~~~~~~~~~~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlgg 384 (570)
T PRK05675 305 LHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGG 384 (570)
T ss_pred HHHhccHHHHHHHHhcCCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCcccccc
Confidence 999999988877774 899999999999999999999999999986 799999999999889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHH
Q 006397 472 NSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTS 549 (647)
Q Consensus 472 ~sl~~a~v~G~~Ag~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~ 549 (647)
|||++|+|||++||++|+++++.... ...... ......... .... .+....+.+++++||++||+|+||+|++++
T Consensus 385 nsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 461 (570)
T PRK05675 385 NSLLDLVVFGRAAGLHLEKALKEGIEYRDASESD-IDAALARLN-KLNE-RTGGEDVAALRRELQSCMQNYFGVFRTGEY 461 (570)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccccCChHH-HHHHHHHHH-HHhc-cCCCCCHHHHHHHHHHHHHhhCCceecHHH
Confidence 99999999999999999988643210 000000 000000000 0000 001134677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-cccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006397 550 LQTAEWRIDELEAEWETYLFEHG-WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 550 L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~ 628 (647)
|++||.+|++|++++..+...+. ...+..+++++|++|||++|+++++|||.|+||||+|||+|||+++|++|.+++++
T Consensus 462 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 541 (570)
T PRK05675 462 MQKGIAQLADLRERIANVKINDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTLY 541 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChhhhcceEEE
Confidence 99999999999988776432111 12234578899999999999999999999999999999999999998878777654
Q ss_pred C
Q 006397 629 P 629 (647)
Q Consensus 629 ~ 629 (647)
.
T Consensus 542 ~ 542 (570)
T PRK05675 542 F 542 (570)
T ss_pred e
Confidence 3
No 26
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=8.1e-86 Score=723.74 Aligned_cols=496 Identities=43% Similarity=0.668 Sum_probs=426.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
++||||||+|.|||+||+.|++ | +|+||||....+|+|.+++||++....+.|+++.|+.|++..+.+++|+++++.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~~ 81 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRYL 81 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHHH
Confidence 5899999999999999999987 8 9999999999899999999999988878899999999999999999999999999
Q ss_pred HHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecC-CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 167 ~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~-~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
++++++.++||.++|++|+++.+|.+....+++|..+|+++.. +.+|..+...|.+.+. .||++++++.|++|+.+
T Consensus 82 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~- 158 (510)
T PRK08071 82 VEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE- 158 (510)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec-
Confidence 9999999999999999999888887777778899999988873 7788899999998885 39999999999999986
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCC
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g 325 (647)
++ +|.||.+.+ .+|+...+.|+.||+||||++.+|+.+++++.++|||+.||+++|+.+.||||+||||+.+...+
T Consensus 159 ~g---~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~pt~~~~~~ 234 (510)
T PRK08071 159 NG---RCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG 234 (510)
T ss_pred CC---EEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEeeeEecCCC
Confidence 56 899999877 46777789999999999999999999999999999999999999999999999999998775432
Q ss_pred CCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChhHHHh
Q 006397 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 405 (647)
Q Consensus 326 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~ 405 (647)
.+ ..++++.++++|++++|.+|+|||++|++..++.|||++++++..++.++ .++|+|+++.+ .+.+
T Consensus 235 ~~---------~~li~e~~rg~g~~lvn~~G~RF~~~~~~~~e~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~ 301 (510)
T PRK08071 235 RC---------VGLVSEAVRGEGAVLINEDGRRFMMGIHPLADLAPRDVVARAIHEELLSG--EKVYLNISSIQ--NFEE 301 (510)
T ss_pred cc---------ceeechhhcCCceEEECCCCCCCccccCccccCCCHHHHHHHHHHHHHcC--CeEEEeccchH--HHHH
Confidence 11 23678889999999999999999999999889999999999999998764 47999998865 4678
Q ss_pred hChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHH
Q 006397 406 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 485 (647)
Q Consensus 406 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag 485 (647)
++|++.+++++.|+|+.+++++|.|.+||++|||+||.+++|+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 302 ~~~~i~~~~~~~gid~~~~~i~v~p~~h~~~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag 381 (510)
T PRK08071 302 RFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAA 381 (510)
T ss_pred HhhHHHHHHHHhCcCCCCCceeEehhheEEcCCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHH
Q 006397 486 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE 565 (647)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~ 565 (647)
++|+.+..... +.... +.. . ......+...+++||++||+|+||+|++++|++|+.+|++|+.+..
T Consensus 382 ~~aa~~~~~~~-~~~~~--------~~~--~---~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~ 447 (510)
T PRK08071 382 EHILTKATKPR-LNPFA--------EKE--K---KFIVLNHLPTKEEIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNM 447 (510)
T ss_pred HHHHhhccCCc-ccchh--------hhh--h---hhccccchHHHHHHHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhh
Confidence 99987642210 00000 000 0 0000111233579999999999999999999999999999963211
Q ss_pred HhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeee
Q 006397 566 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTII 627 (647)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~ 627 (647)
.... .......+|++|||++|+++++|||.|+||||+|||+|||++ +|.++++
T Consensus 448 --~~~~----~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~---~~~~~~~ 500 (510)
T PRK08071 448 --ILDH----DALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR---NWRGKEI 500 (510)
T ss_pred --hccc----cccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc---ccCceEE
Confidence 1000 011146789999999999999999999999999999999998 4566555
No 27
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=100.00 E-value=5.6e-85 Score=716.21 Aligned_cols=487 Identities=47% Similarity=0.718 Sum_probs=426.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
++||||||+|+|||+||+.|++.|.|+||||....+|+|.+++||+.....+.|+++.++.|+++.+.+++++++++.++
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCCEEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 58999999999999999999998899999999888899999999999888888999999999999999999999999999
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
+++++.++||+++|++|....+|.+....+++|..+|+++..+.+|..+...|.+.+++.+||++++++.|++|+.+ ++
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g 160 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE-TG 160 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CC
Confidence 99999999999999999988888877778899999999988888899999999999987569999999999999986 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCC
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 327 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~ 327 (647)
+|.|+.+.+. ++...|.|+.||+||||++.+|..++++..++|||+.||+++|+.+.||||+||||+.+..++.
T Consensus 161 ---~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~pt~~~~~~~- 234 (488)
T TIGR00551 161 ---RVVGVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTALYKPRA- 234 (488)
T ss_pred ---EEEEEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEeeEecCCCC-
Confidence 7999988763 4455799999999999999999999999999999999999999999999999999987754321
Q ss_pred CCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChhHHHhhC
Q 006397 328 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 407 (647)
Q Consensus 328 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~ 407 (647)
..+++++.++++|++++|.+|+||+++|++..++.|||++++++.+++.+++..++|+|.++.+ .+.+++
T Consensus 235 --------~~~l~~~~~~g~g~~lvn~~G~RF~~~~~~~~el~~rd~v~~ai~~~~~~~~~~~v~ld~~~~~--~~~~~~ 304 (488)
T TIGR00551 235 --------RYFLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGADCVFLDASGIE--AFRQRF 304 (488)
T ss_pred --------cceeeehhhcCCceEEECCCCCChhhccCcccccCchHHHHHHHHHHHHhcCCCeEEecCcchH--HHHHHc
Confidence 1457888899999999999999999999998899999999999999998765457999999765 478899
Q ss_pred hhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHH
Q 006397 408 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 487 (647)
Q Consensus 408 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~ 487 (647)
|++.+++.+.|+|+.++|++|.|.+||++|||+||.+++|+|||||||||++|+|+||+||++||||++|+|||++||++
T Consensus 305 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~ 384 (488)
T TIGR00551 305 PTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAED 384 (488)
T ss_pred chHHHHHHHhCCCCCCCceecccccEEecCCEEECCCCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006397 488 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 567 (647)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~ 567 (647)
|+++....... ............ .. .. ...+.+++.+||++||+++||+|++++|++|+.+|++|++++..
T Consensus 385 aa~~~~~~~~~-~~~~~~~~~~~~---~~---~~-~~~~~~~~~~l~~~m~~~~gi~r~~~~l~~al~~~~~l~~~~~~- 455 (488)
T TIGR00551 385 ISRRPPYASDI-STSPPWDEPRSE---NP---DD-RVVLQHNMSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDE- 455 (488)
T ss_pred HHhhccccCcc-chhhhhhhhhhc---cc---cc-ccchHHHHHHHHHHHhheeeEEEcHHHHHHHHHHHHHHHHHHHH-
Confidence 98875321100 000000000000 00 00 11356778899999999999999999999999999999876532
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCC
Q 006397 568 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615 (647)
Q Consensus 568 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P 615 (647)
++++||+++|+++++|||.|+||||+|||+|||
T Consensus 456 ---------------~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 456 ---------------YELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 247999999999999999999999999999998
No 28
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-85 Score=713.58 Aligned_cols=538 Identities=39% Similarity=0.555 Sum_probs=469.3
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCC-----CCCHHHHHHHHHHhcCCCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESHMQDTIVAGAYLC 158 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~-----~d~~~~~~~~~~~~g~~~~ 158 (647)
...++||||||||.|||+||+.+++.| +|+||||....+|+|..++||+++.... .|+++.|+.|+++.+.+++
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~ 82 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLG 82 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcC
Confidence 345799999999999999999999999 9999999999999999999999988742 2589999999999999999
Q ss_pred CHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006397 159 DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
|++.+..++..+++.+.+|++||++|.+..+|.+....+++++..|.++..+.+|..+...|.+++.+..+++++.+..+
T Consensus 83 dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~ 162 (562)
T COG1053 83 DQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFV 162 (562)
T ss_pred CHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998668899999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccc
Q 006397 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 318 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p 318 (647)
++|+.++++ .|.|++..+..+|+...++||+||+||||++.+|+.+++....||||+.|++++|+.+.||||+||||
T Consensus 163 ~~l~~~~~~---~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme~~Q~hp 239 (562)
T COG1053 163 LDLLVDDGG---GVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHP 239 (562)
T ss_pred hhheecCCC---cEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCCcccccc
Confidence 999988555 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccc--cc-ccccCchhHHHHHHHHHHHhcCC------c
Q 006397 319 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY--DE-RAELAPRDVVARSIDDQLKKRNE------K 389 (647)
Q Consensus 319 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y--~~-~~~l~~rd~~~~~i~~~~~~~~~------~ 389 (647)
+.+... ..+++|++|++||+++|.+|+|||+.| .+ ..++.|||++++++..++.++++ .
T Consensus 240 t~~~~~------------g~l~~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~ 307 (562)
T COG1053 240 TGLVGS------------GILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGD 307 (562)
T ss_pred ceecCC------------ceEEeeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCc
Confidence 998752 578999999999999999999999994 33 47899999999999999998764 4
Q ss_pred eEEEeCCCCChhHHHhhChhHHHHHHH-cCCCCCCCcEEEeeeeceecceeEeC-CCCcccccCcccccccccCCCCCCC
Q 006397 390 YVLLDISHKPTEKILSHFPNIAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAG-LQGETNVRGLYVAGEVACTGLHGAN 467 (647)
Q Consensus 390 ~v~lD~~~~~~~~~~~~~~~~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD-~~~~T~ipGLyAaGe~a~gG~~Ga~ 467 (647)
++++|+++++.+.+.+++|.+...+.. .|+|+.++|++|.|..||+||||++| .++.|.||||||||||+|+..||+|
T Consensus 308 ~v~ldl~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGan 387 (562)
T COG1053 308 YVYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGAN 387 (562)
T ss_pred eEEEEhhhcChHHHHhcCchHHHHHHhhcCCCcccceeEecccceeccCCEeecccccccCCCCeEECceecccccCCcc
Confidence 799999999888888999988777665 58999999999999999999999999 5778999999999999987778999
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccch-hhhhcHHHHHHHHHHHHHhcCccccC
Q 006397 468 RLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRKELQSIMWRYVGIVRS 546 (647)
Q Consensus 468 rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~m~~~~g~~r~ 546 (647)
||++|||++++|||++||..+++|++......+....... .....+.+. ....++.+++++||++|+++++|+|+
T Consensus 388 rlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~R~ 463 (562)
T COG1053 388 RLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSPPASAVEAE----RERFDALLRRGGDENPAQIREELQEVMGDNVGIFRN 463 (562)
T ss_pred cCCccccHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHH----HHHHHHHHhccCCCCHHHHHHHHHHHhhCCceeccC
Confidence 9999999999999999999999998765332110000000 000000000 11257899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCe
Q 006397 547 TTSLQTAEWRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPT 625 (647)
Q Consensus 547 ~~~L~~al~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~ 625 (647)
++.|++++++|.+|++++.+..... ....+.++.+++|+.|||.+|++++.+||.|+||||+|||+|||++||++|+++
T Consensus 464 ~~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~~w~kh 543 (562)
T COG1053 464 EEGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENWLKH 543 (562)
T ss_pred HHHHHHHHHHHHHHHHHhhcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchHHHHHH
Confidence 9999999999999999998632211 111234678899999999999999999999999999999999999999999998
Q ss_pred eecC-CCccccccccccc
Q 006397 626 IILP-SLVNCTWSSRQLH 642 (647)
Q Consensus 626 ~~~~-~~~~~~~~~~~~~ 642 (647)
++.. +. ++.....|++
T Consensus 544 t~~~~~~-~~~~~~~~v~ 560 (562)
T COG1053 544 TLASYDK-KPRLEYEPVK 560 (562)
T ss_pred HHHhcCC-ccceeeeecc
Confidence 7753 33 5555555553
No 29
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=100.00 E-value=5.4e-84 Score=717.05 Aligned_cols=499 Identities=38% Similarity=0.566 Sum_probs=430.5
Q ss_pred HHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCCHHHHHHHHHHhcCCCCCHHHHHHHHHhhHHHHHHHHHcCCc
Q 006397 107 VAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGAS 183 (647)
Q Consensus 107 la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 183 (647)
|++.| +|+||||....+|+|.+++||+++... +.|+++.|+.|+++.+.+++|+++++.+++++++.++||+++|++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46789 999999999999999999999988775 579999999999999999999999999999999999999999999
Q ss_pred cccCCCCcccccccCCcc--------ccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEE
Q 006397 184 FDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 255 (647)
Q Consensus 184 ~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv 255 (647)
|++..+|.+....+++|+ .+|+++..+.+|..+...|.+.+++ .||+|++++.+++|+.+ +| +|+||
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~-~gi~i~~~~~~~~Li~~-~g---~v~Ga 155 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLK-ADTSFFNEYFALDLLME-DG---ECRGV 155 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHh-CCCEEEeccEEEEEEee-CC---EEEEE
Confidence 998888876666667764 4688888888999999999999987 59999999999999986 67 99999
Q ss_pred EEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCC
Q 006397 256 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRE 335 (647)
Q Consensus 256 ~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~ 335 (647)
.+.+..+|+...|.|+.|||||||++++|..++++..++|||+.||+++||.+.||||+||||+.+...
T Consensus 156 ~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~----------- 224 (565)
T TIGR01816 156 IAYCLETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGA----------- 224 (565)
T ss_pred EEEEcCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCC-----------
Confidence 998877888889999999999999999999999999999999999999999999999999999876421
Q ss_pred ccceeeecccCCCcEEEeCCCCccccccccc-cccCchhHHHHHHHHHHHhcCC-----ceEEEeCCCCChhHHHhhChh
Q 006397 336 NSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVARSIDDQLKKRNE-----KYVLLDISHKPTEKILSHFPN 409 (647)
Q Consensus 336 ~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-~~l~~rd~~~~~i~~~~~~~~~-----~~v~lD~~~~~~~~~~~~~~~ 409 (647)
.+++++.++++|++++|.+|+||+++|++. .++.+||+++++|..++.++++ .++|+|+++++.+.+..++|.
T Consensus 225 -~~l~~e~~r~~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~ 303 (565)
T TIGR01816 225 -GCLITEGCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPG 303 (565)
T ss_pred -ceEEeccccCCceEEECCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhh
Confidence 467888999999999999999999999876 5899999999999999876542 479999999999999999999
Q ss_pred HHHHHHH-cCCCCCCCcEEEeeeeceecceeEeCCCCc---------ccccCcccccccccCCCCCCCccCchhhHHHHH
Q 006397 410 IAAECLK-YGLDITSQPIPVVPAAHYMCGGVRAGLQGE---------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 479 (647)
Q Consensus 410 ~~~~~~~-~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~---------T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v 479 (647)
+.+.+.. .|+|+.++|+++.|.+||++|||.||.+++ |+||||||||||+|+|+||+||++||+|++|+|
T Consensus 304 ~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~v 383 (565)
T TIGR01816 304 ISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVV 383 (565)
T ss_pred HHHHHHHHcCCCCCCCcEEeeeeeeeecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHH
Confidence 9888887 699999999999999999999999999998 689999999999988999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccccCcccccccchh-----hhhcHHHHHHHHHHHHHhcCccccCHHHHHHHH
Q 006397 480 FARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHN-----ILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAE 554 (647)
Q Consensus 480 ~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al 554 (647)
||++||++|+++++..... ... ....... ....+.. ....+.+++++||++||+++||+|++++|++|+
T Consensus 384 fGr~Ag~~aa~~~~~~~~~-~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al 457 (565)
T TIGR01816 384 FGRAAGLSAAEYAKPGSDV-KPM---PPNAGEE--SVMRLDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGV 457 (565)
T ss_pred HHHHHHHHHHHhhcccccc-ccc---ccchhHH--HHHHHHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHH
Confidence 9999999999986532100 000 0000000 0000000 112467888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcc-CcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCeeec
Q 006397 555 WRIDELEAEWETYLFEH-GWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 555 ~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~~~~ 628 (647)
.+|++|++++..+.... ....++++++++|++|||++|+++++|||+|+||||+|||.|||++||++|.+++++
T Consensus 458 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 532 (565)
T TIGR01816 458 EKISALKERYKNVKINDKSKVWNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLS 532 (565)
T ss_pred HHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCccccccEEEE
Confidence 99999998876542111 123457889999999999999999999999999999999999999999888888764
No 30
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.6e-77 Score=652.83 Aligned_cols=456 Identities=35% Similarity=0.528 Sum_probs=390.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
+||||||+|+|||+||+.|++.| +|+||||.. ..++|.+++||++....+.|+++.++.|++..+.+++++++++.++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 69999999999999999999999 999999986 4567888899998777778999999999999999999999999999
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
+++++.++||+++|++|+.. ...+++.+++..+..+.+|..+...|.+.+++ .|++++++ .+++|+.+ ++
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~-------~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~-~v~~l~~~-~g 150 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGN-------ELEGGHSFPRVFTIKNETGKHIIKILYKHARE-LGVNFIRG-FAEELAIK-NG 150 (466)
T ss_pred HHHHHHHHHHHHcCCCcccC-------CCcCCccCCeEEECCCCchHHHHHHHHHHHHh-cCCEEEEe-EeEEEEee-CC
Confidence 99999999999999999753 13467788888877777899999999999987 49999876 79999875 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCC
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLP 327 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~ 327 (647)
+|.|+.+ +++ .+.|+.||+||||++.+|..+++++.++|||+.|++++||.+.||||+||||+.+..+.
T Consensus 151 ---~v~Gv~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~~~~~-- 219 (466)
T PRK08401 151 ---KAYGVFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIGKR-- 219 (466)
T ss_pred ---EEEEEEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEecccccCCC--
Confidence 7888875 243 58999999999999999988889999999999999999999999999999998765311
Q ss_pred CCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChhHHHhhC
Q 006397 328 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHF 407 (647)
Q Consensus 328 ~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~~~ 407 (647)
..+++++.++++|+++||.+|+||++ |+.+||++++++..++..+ ..+|+|.++++ .+.+++
T Consensus 220 --------~~~l~~e~~r~~g~ilvN~~G~RF~~------E~~~rd~v~~ai~~~~~~~--~~v~ld~~~~~--~~~~~~ 281 (466)
T PRK08401 220 --------GTYLISEAVRGAGAKLVTGDGERFVN------ELETRDIVARAIYRKMQEG--KGVFLDATGIE--DFKRRF 281 (466)
T ss_pred --------CCeEEeeecccCceEEECCCCCChhc------ccccHHHHHHHHHHHHhcC--CEEEEeCcCHH--HHHHHh
Confidence 14678899999999999999999996 5688999999999988764 47999998763 567789
Q ss_pred hhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHH
Q 006397 408 PNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 487 (647)
Q Consensus 408 ~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~ 487 (647)
|.+++.+.+.|+|+.++++++.|..||++|||+||.+++|+|||||||||++|+|+||+|||+||||++|+|||++||++
T Consensus 282 ~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~ 361 (466)
T PRK08401 282 PQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVART 361 (466)
T ss_pred HHHHHHHHHcCCCcCCcccccccceeecCCCEEECCCCcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997899999999999999999999999999
Q ss_pred HHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHh
Q 006397 488 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 567 (647)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~ 567 (647)
|++.... ... ... .+. .. ..+.++ .+||++||+++||+|++++|++++.+|++|+++
T Consensus 362 aa~~~~~----~~~---~~~--~~~-------~~--~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~~~~~~l~~~---- 418 (466)
T PRK08401 362 ISRERPK----LRE---VKE--PPY-------HG--YELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418 (466)
T ss_pred HhhhCcC----ccc---cch--hhh-------hc--cccccH-HHHHHHHhccceEEECHHHHHHHHHHHHHHHhc----
Confidence 8764210 000 000 000 00 011223 569999999999999999999999999888532
Q ss_pred hhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCCCccCCCCCe
Q 006397 568 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPT 625 (647)
Q Consensus 568 ~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~~~~~~~ 625 (647)
.+|+++|+++++|||.|+||||+|||+|||++|++|.++.
T Consensus 419 ------------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~~~~~~~ 458 (466)
T PRK08401 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPS 458 (466)
T ss_pred ------------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccChhhhccc
Confidence 2567899999999999999999999999999988766655
No 31
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=100.00 E-value=6.9e-77 Score=657.22 Aligned_cols=518 Identities=21% Similarity=0.242 Sum_probs=389.9
Q ss_pred cEEEECCcHHHHHHHHHHH----hcC-CeEEEEecCCCCCccccccC--CeeeecC---CCCCHHHHHHHHHHhcCCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVA----KHG-TVAVITKAEPHESNTNYAQG--GVSAVLC---PSDSVESHMQDTIVAGAYLCD 159 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la----~~G-~V~vlEk~~~~~g~s~~a~G--gi~~~~~---~~d~~~~~~~~~~~~g~~~~~ 159 (647)
||||||||+|||+||+.|+ +.| +|+||||....++++ +++| |++.... ..|+++.++.+++..+.+++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 679 999999998765544 6777 4554443 257899999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHcCCccccCC-CCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006397 160 DETVRVVCTEGPDRIRELIAIGASFDRGE-DGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~G~~~~~~~-~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
+++++.+++++++.++||.++|++|++.+ +|.+. ..+... ....|..+.+.+...+.+. ++++++++.+
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~--~~g~~~-------~~~gG~~~~r~l~~~l~~~-~~~i~~~~~v 149 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYV--REGRWQ-------IMIHGESYKPIVAEAAKNA-LGDIFERIFI 149 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccc--cCCCcc-------cCcCchhHHHHHHHHHHhC-CCeEEcccEE
Confidence 99999999999999999999999998753 55322 221100 0112455666666666653 7899999999
Q ss_pred EEEEecCC--CCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCC---------CCCCCcchhHHHHHHcCCe
Q 006397 239 IDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAV 307 (647)
Q Consensus 239 ~~l~~~~~--g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~---------~~~~~~Gdg~~~a~~aGa~ 307 (647)
++|+++++ | +|+||.+.+..+|+...|.|+.||+||||++.+|..++ +++.+||||+.||+++||.
T Consensus 150 ~~Ll~d~~~~G---rV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~aGA~ 226 (614)
T TIGR02061 150 VKLLLDKNTPN---RIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQAGAE 226 (614)
T ss_pred EEEEecCCCCC---eEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHHcCCC
Confidence 99998643 6 89999998877888888999999999999999987432 3788999999999999999
Q ss_pred ecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccc-------cccC----chhHHH
Q 006397 308 ISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-------AELA----PRDVVA 376 (647)
Q Consensus 308 l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~-------~~l~----~rd~~~ 376 (647)
+.+||| ||||+.+..+..+ ....++++| ++++|.+|+|||.+|+|. .+++ |||+++
T Consensus 227 l~dme~-qf~pt~~~~~~~~------~~~~~l~~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~va 293 (614)
T TIGR02061 227 MTQMEN-RFVPARFKDGYGP------VGAWFLLFK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRN 293 (614)
T ss_pred ccCCcc-ceecceeccccCC------CCceEEEee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHH
Confidence 999999 9999988643211 111467776 799999999999877653 2333 478999
Q ss_pred HHHHHHHHhcCCceEEEeCCCC---------------ChhHHHhhChhHHHHHH---HcCCCCCCCcEEEeeeeceecc-
Q 006397 377 RSIDDQLKKRNEKYVLLDISHK---------------PTEKILSHFPNIAAECL---KYGLDITSQPIPVVPAAHYMCG- 437 (647)
Q Consensus 377 ~~i~~~~~~~~~~~v~lD~~~~---------------~~~~~~~~~~~~~~~~~---~~G~d~~~~~i~v~p~~~~~~G- 437 (647)
++|..++.+++ ++||||++++ +.+.+...+|.....+. ..|+||.++||||.|++||+||
T Consensus 294 rai~~e~~~g~-g~vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy~mGg 372 (614)
T TIGR02061 294 HMMLREMREGR-GPIYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPYLMGS 372 (614)
T ss_pred HHHHHHHHcCC-CCEEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCeecCC
Confidence 99999999864 5699998844 44455556664443333 2599999999999999999999
Q ss_pred -----eeEeC-----------------CCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcc
Q 006397 438 -----GVRAG-----------------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 438 -----Gi~vD-----------------~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
||+|| .+++|+||||||||||+|+|+| |++||||+++.++|..|++.+.......
T Consensus 373 ~~~~~Gi~vd~~~~~~~~~~~~~~~~~~~~~T~i~gLyA~Ge~~~~~~h---~l~~nsl~eg~~ag~~a~~~~~~~~~~~ 449 (614)
T TIGR02061 373 HSGCCGIWVSGPEDWVPEEYKVRAAKVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWILDHKDFK 449 (614)
T ss_pred cccccceeecccccccccccccccccccCCccccCCEEeceecccCcch---hhHHhHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998 9999999999999999988998 5899999986666655554432211000
Q ss_pred ccccccccccc-ccccCccc-c---c----ccchhhhhcHHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHHHH
Q 006397 496 SIDLSASNWWT-RTVVPKSL-G---C----NVMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDELE 561 (647)
Q Consensus 496 ~~~~~~~~~~~-~~~~~~~~-~---~----~~~~~~~~~~~~~~~~l~~~m~~~~g~~-----r~~~~L~~al~~l~~l~ 561 (647)
.....+..... +...+... . . ........++.+++++||++||+|+||+ |++++|++||.+|++|+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~~al~~l~~l~ 529 (614)
T TIGR02061 450 PEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLDTGLKLMAMLE 529 (614)
T ss_pred CCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHHHHHHHHHHHH
Confidence 00000000000 00000000 0 0 0000000235678899999999999999 99999999999999998
Q ss_pred HHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCc--ccccccCCCCCccCCCCCeee-cC--CCccccc
Q 006397 562 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTII-LP--SLVNCTW 636 (647)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~~~~~~~~~~~-~~--~~~~~~~ 636 (647)
+++..+ ...+.+++++++|++|||++|+++++|||.|+||| |+|||+|||++||++|.++++ +. ++.+...
T Consensus 530 ~~~~~~----~~~~~~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~~w~~~~~~~~~~~~g~~~~ 605 (614)
T TIGR02061 530 EDLEKL----AARDLHELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDENWKCFVNSKYDPATGETTI 605 (614)
T ss_pred HHHhcc----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCchhhhceEEEEEcCCCCceEE
Confidence 877542 22345788999999999999999999999999999 999999999999887888765 32 3344444
Q ss_pred cccccc
Q 006397 637 SSRQLH 642 (647)
Q Consensus 637 ~~~~~~ 642 (647)
.+.|+-
T Consensus 606 ~~~~~~ 611 (614)
T TIGR02061 606 EKKPYY 611 (614)
T ss_pred Eeeccc
Confidence 555543
No 32
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-75 Score=649.23 Aligned_cols=516 Identities=22% Similarity=0.276 Sum_probs=395.2
Q ss_pred cccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc-ccccCCeeeecCC-CCCHHHHHHHHHHhcCCCCCH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT-NYAQGGVSAVLCP-SDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s-~~a~Ggi~~~~~~-~d~~~~~~~~~~~~g~~~~~~ 160 (647)
+.++||||||||.|||+||+.|++. | +|+||||....++++ ..+.+|++....+ .++++.|+.|++..+.+++++
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 4679999999999999999999987 6 999999998754433 3455566554333 589999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006397 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||+++|++|....+|.+.... .+.... ....+.+|..+...|.+.+++ .||+|++++.|++
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~--~~~~~~-~~~~~~~G~~i~~~L~~~~~~-~gv~i~~~~~v~~ 162 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK--VHHMGS-YVLPMPEGHDIKKVLYRQLKR-ARVLITNRIMATR 162 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeec--ccccCc-ccccCCChHHHHHHHHHHHHH-CCCEEEcceEEEE
Confidence 999999999999999999999999876666543211 111110 001233578899999999987 5999999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc------CCC-CCCCCCCcchhHHHHHHcCCeeccccc
Q 006397 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------YPS-TTNPLVATGDGMAMAHRAQAVISNMEF 313 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~~~-~~~~~~~~Gdg~~~a~~aGa~l~~~ef 313 (647)
|+.++++ +|.||.+.+..+|+...+.|+.||+||||++++ |.. +++++.+||||+.||+++||.+.+|||
T Consensus 163 Li~~~~g---~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~ 239 (554)
T PRK08275 163 LLTDADG---RVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAELANLEC 239 (554)
T ss_pred EEEcCCC---eEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCcccCceE
Confidence 9986456 899999887667877789999999999999986 322 334568999999999999999999999
Q ss_pred ccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEE
Q 006397 314 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLL 393 (647)
Q Consensus 314 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~l 393 (647)
+||||+.....+ +. ..++++ +.|++++|.+|+||+++|++. ..++++|..++.+++ ++||+
T Consensus 240 ~q~~p~~~~~~~----~~-----~~~~~~---~~g~~lvn~~G~RF~~~~~~~------~~~~~ai~~e~~~g~-g~v~l 300 (554)
T PRK08275 240 FQINPLIKDYNG----PA-----CAYVTG---PLGGYTANAKGERFIECDYWS------GQMMWEFYQELQSGN-GPVFL 300 (554)
T ss_pred EEEeceeecCCC----Cc-----cceecc---ccCcEEeCCCCCccccccCCc------hHHHHHHHHHHHcCC-CcEEE
Confidence 999997653221 10 112221 468899999999999987653 458999999998765 57999
Q ss_pred eCCCCChhHHHhhC---------hhHHHHHHHcCCCCCCCcEEEeeeece-----ecceeEeCCCCcccccCcccccccc
Q 006397 394 DISHKPTEKILSHF---------PNIAAECLKYGLDITSQPIPVVPAAHY-----MCGGVRAGLQGETNVRGLYVAGEVA 459 (647)
Q Consensus 394 D~~~~~~~~~~~~~---------~~~~~~~~~~G~d~~~~~i~v~p~~~~-----~~GGi~vD~~~~T~ipGLyAaGe~a 459 (647)
|+++++.+.+. ++ |+....+...|+||.++|+||.|.+|| +||||+||.+++|+|||||||||++
T Consensus 301 d~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~t~i~gl~a~Ge~~ 379 (554)
T PRK08275 301 KLDHLAEETIQ-TIETILHTNERPSRGRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMA 379 (554)
T ss_pred ECCCCCHHHHH-HHHhhhhhcccchHHHHHHHcCCCcccCcccccCCCceeecccccCcEEECCCCccCCCCEEECcccC
Confidence 99999876543 23 333444566899999999999998774 5679999999999999999999997
Q ss_pred cCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHh
Q 006397 460 CTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWR 539 (647)
Q Consensus 460 ~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 539 (647)
|+| +|++.+|++||++||++|++|++................ ...... ........+.+++.+||++||+
T Consensus 380 ~~~--------~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~lq~~m~~ 449 (554)
T PRK08275 380 SVP--------HNYMLGAFTYGWFAGENAAEYVAGRDLPEVDAAQVEAER-ARVLAP-LHREDGLPPAQVEYKLRRLVND 449 (554)
T ss_pred Cch--------hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHHhcc-ccccCCCCHHHHHHHHHHHHHh
Confidence 433 489999999999999999998754321100000000000 000000 0000113577889999999999
Q ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc--ccccCCCCC
Q 006397 540 YVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL--HYMVDFPHV 617 (647)
Q Consensus 540 ~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~--h~R~D~P~~ 617 (647)
|+||+|++++|++||++|++|++++.++ ...+.+++++++|++|||++|+++++|||+||||||+ |||+|||++
T Consensus 450 ~~gi~R~~~~L~~al~~l~~l~~~~~~~----~~~~~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG~~~H~R~DyP~~ 525 (554)
T PRK08275 450 YLQPPKVTRKMEIGLQRFAEIREDLERI----KARDPHELMRALEVSSIRDCAEMAARASLFRTESRWGLYHYRVDFPER 525 (554)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCCCCC
Confidence 9999999999999999999999887653 2334578889999999999999999999999999999 999999999
Q ss_pred ccCCCCCeeecC--CCccccccccccc
Q 006397 618 EENKRLPTIILP--SLVNCTWSSRQLH 642 (647)
Q Consensus 618 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 642 (647)
||++|+++++.. ++.+....+.|++
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (554)
T PRK08275 526 NDAEWFCHTHLRKDEDGRMVSFKRPVE 552 (554)
T ss_pred ChhhhceeeEEEEcCCCceEEEeeccC
Confidence 998787766533 3333333455554
No 33
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=100.00 E-value=6.2e-75 Score=648.36 Aligned_cols=517 Identities=19% Similarity=0.215 Sum_probs=398.2
Q ss_pred cccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccC--CeeeecCCCCCHHHHHHHHHHhcCCCCCH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s~~a~G--gi~~~~~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
+.++||||||||+|||+||+.|++. | +|+||||....++++ +++| +++......++++.++.+++..+.+++++
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~ 87 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRE 87 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCH
Confidence 4579999999999999999999998 9 999999998755443 4444 35555556789999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006397 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
++++.+++++++.++||+.+|++|....+|.+.. .+ +. + ....|..+...|.+.+++..||++++++.|++
T Consensus 88 ~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~--~g-~~--~----~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~ 158 (608)
T PRK06854 88 DLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVR--RG-RW--Q----IMINGESYKPIVAEAAKKALGDNVLNRVFITD 158 (608)
T ss_pred HHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccc--cC-Cc--c----CCCChHHHHHHHHHHHHhcCCCEEEeCCEEEE
Confidence 9999999999999999999999998776664331 11 11 0 01247778888888887754599999999999
Q ss_pred EEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCC---------CCCCCcchhHHHHHHcCCeeccc
Q 006397 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT---------NPLVATGDGMAMAHRAQAVISNM 311 (647)
Q Consensus 241 l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~---------~~~~~~Gdg~~~a~~aGa~l~~~ 311 (647)
|+.+ ++ +|+||.+.+..+++...|.|+.||+||||++.+|..++ ++..+||||+.||+++||.+.||
T Consensus 159 Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~m 234 (608)
T PRK06854 159 LLVD-DN---RIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTF 234 (608)
T ss_pred EEEe-CC---EEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHHHhCCcccCC
Confidence 9976 45 89999887766777778999999999999998886533 36779999999999999999999
Q ss_pred ccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccccccc---------ccCchhHHHHHHHHH
Q 006397 312 EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA---------ELAPRDVVARSIDDQ 382 (647)
Q Consensus 312 ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~---------~l~~rd~~~~~i~~~ 382 (647)
|| ||||+.+..... |. ..+ ++++|++++|.+|+|||++|+|.. +++|||+++++|..+
T Consensus 235 e~-qf~p~~~~~~~~---~~-----~~~----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~~e 301 (608)
T PRK06854 235 EN-RFIPLRFKDGYG---PV-----GAW----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATVEE 301 (608)
T ss_pred cc-eEeccccCCCCC---Cc-----ccc----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHHHH
Confidence 99 999997643110 11 111 246799999999999999998742 467899999999999
Q ss_pred HHhcCCceEEEeCCCCC------hhHHHhhC---hhHHHHHHHcCCCCCCCcEEEeeeeceecce------eEeC-----
Q 006397 383 LKKRNEKYVLLDISHKP------TEKILSHF---PNIAAECLKYGLDITSQPIPVVPAAHYMCGG------VRAG----- 442 (647)
Q Consensus 383 ~~~~~~~~v~lD~~~~~------~~~~~~~~---~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GG------i~vD----- 442 (647)
+++++ ++||||+++++ .+.+.+.+ |.+...+...|+||.++||||.|++||+||| |+||
T Consensus 302 ~~~g~-g~v~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi~vd~~~~~ 380 (608)
T PRK06854 302 NKAGR-GPIYMDTEEALQDKHLESELWEDFLDMTPGQALLWAAQNIEPEEENSEIMGTEPYIVGSHSGASGYWVSGPEDW 380 (608)
T ss_pred HhcCC-CCeEEEcccccccchhHHHHHHHHhccCHHHHHHHHHcCCCcccCceeeeccCCeeecCCCCceEEEecCcccc
Confidence 98764 56999998875 22233443 5666666678999999999999999999997 8999
Q ss_pred --------CCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhccc---cccccc--ccc-ccc
Q 006397 443 --------LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS---IDLSAS--NWW-TRT 508 (647)
Q Consensus 443 --------~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~---~~~~~~--~~~-~~~ 508 (647)
.+++|+||||||||||+|+|.| +++++++. +|++||.+++++++... .+.+.. ... .+.
T Consensus 381 ~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~---~l~~~s~~----~g~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (608)
T PRK06854 381 VPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGSFA----EGRIAAKAAVRYILDNKDEKPEIDDDQIEELKKEI 453 (608)
T ss_pred cccccccccccccCCCCEEEeeecCCCCcc---hhHHHHHH----HHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999865544 56666554 68888888888775421 111100 000 000
Q ss_pred ccCcc-cc-------cccchhhhhcHHHHHHHHHHHHHhcCccc-----cCHHHHHHHHHHHHHHHHHHHHhhhccCccc
Q 006397 509 VVPKS-LG-------CNVMHNILRRTKEVRKELQSIMWRYVGIV-----RSTTSLQTAEWRIDELEAEWETYLFEHGWEQ 575 (647)
Q Consensus 509 ~~~~~-~~-------~~~~~~~~~~~~~~~~~l~~~m~~~~g~~-----r~~~~L~~al~~l~~l~~~~~~~~~~~~~~~ 575 (647)
..+.. .. .........++.+++.+||++||+|+||+ |++++|++||++|++|++++... ...+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~----~~~~ 529 (608)
T PRK06854 454 YAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKL----AARD 529 (608)
T ss_pred HhHHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhc----cCCC
Confidence 00000 00 00000011246788899999999999998 99999999999999999887643 1223
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcccCc--ccccccCCCCCccCCCCCeeec---CCCcccccccccc
Q 006397 576 TFVGLEACEMRNLFCCAKLVVSSALARHESR--GLHYMVDFPHVEENKRLPTIIL---PSLVNCTWSSRQL 641 (647)
Q Consensus 576 ~~~~~~~~e~~~~l~~a~~~~~aal~R~ESR--G~h~R~D~P~~~~~~~~~~~~~---~~~~~~~~~~~~~ 641 (647)
.+++++++|++||+++|+++++|||+||||| |+|||+|||++|+++|++++++ .++.+.+..+.|.
T Consensus 530 ~~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (608)
T PRK06854 530 LHELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNSRYDPGTGEWTIRKLPY 600 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChhhhcEEEEEEEcCCCCcEEEEEecc
Confidence 5678889999999999999999999999999 9999999999998778887653 2556666555554
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=6.7e-75 Score=675.40 Aligned_cols=499 Identities=24% Similarity=0.306 Sum_probs=387.8
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC-CCccccccCCeeee-cCCCCCHHHHHHHHHHhcCCCCCHH
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH-ESNTNYAQGGVSAV-LCPSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~-~g~s~~a~Ggi~~~-~~~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
.+.++||||||||.|||+||+.+++.| +|+||||.... +|++....+|++.. ....|+++.|+.|+++.+.++++++
T Consensus 10 ~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~ 89 (897)
T PRK13800 10 LRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQR 89 (897)
T ss_pred ceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHH
Confidence 446799999999999999999999999 99999999863 23444444566433 3336899999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcC---CCcEEEcceEE
Q 006397 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFA 238 (647)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~---~gv~i~~~~~v 238 (647)
.++.+++++++.++||+++|++|++..+|.+........ ......+.+|..+...|.+.+.+. .+|++++++.+
T Consensus 90 ~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~---~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~ 166 (897)
T PRK13800 90 TVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRS---GSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMP 166 (897)
T ss_pred HHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccC---CCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceee
Confidence 999999999999999999999999887775543321100 000012446888888888877643 37999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc------C--CCCCCCCCCcchhHHHHHHcCCeecc
Q 006397 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y--PSTTNPLVATGDGMAMAHRAQAVISN 310 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~--~~~~~~~~~~Gdg~~~a~~aGa~l~~ 310 (647)
++|+.+ +| +|+||.+++..+|+.+.|.||.||+||||++++ | ..++++ .+||||++||+++||.+.|
T Consensus 167 ~~Li~~-~g---~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~-~~tGDG~amA~raGA~l~~ 241 (897)
T PRK13800 167 VRVLTE-GG---RAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENP-TNAGDGYSMAYHAGAELSG 241 (897)
T ss_pred EEEEee-CC---EEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCC-CcccHHHHHHHHcCCcccC
Confidence 999986 56 899999988888988899999999999999987 3 223344 7999999999999999999
Q ss_pred cccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccc-cccccccCchhHHHHHHHHHHHhcCCc
Q 006397 311 MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPRDVVARSIDDQLKKRNEK 389 (647)
Q Consensus 311 ~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~-y~~~~~l~~rd~~~~~i~~~~~~~~~~ 389 (647)
|||+||||+.....| .++++.++++|++++|.+|+|||++ |.+ + .+...+..++.+++ +
T Consensus 242 me~vqfhPt~~~~~g------------~~~~~~~~~~G~~lvN~~GeRFm~~~~~~------~-~i~~~i~~ei~~g~-g 301 (897)
T PRK13800 242 IECFQINPLIKDYNG------------PACAYVANPFGGYQVNAQGERFVDSDYWS------G-QMMAEVKREIESAR-G 301 (897)
T ss_pred ceeEEeeccccCCCC------------chhheeecccCcEEECCCCCccccCcccc------h-hHHHHHHHHHhcCC-C
Confidence 999999997663222 1233456778999999999999973 422 2 23445667776654 6
Q ss_pred eEEEeCCCCChhHHHhhChhHHHH---------HHHcCCCCCCCcEEEee-----eeceecceeEeCCCCcccccCcccc
Q 006397 390 YVLLDISHKPTEKILSHFPNIAAE---------CLKYGLDITSQPIPVVP-----AAHYMCGGVRAGLQGETNVRGLYVA 455 (647)
Q Consensus 390 ~v~lD~~~~~~~~~~~~~~~~~~~---------~~~~G~d~~~~~i~v~p-----~~~~~~GGi~vD~~~~T~ipGLyAa 455 (647)
+||||++|++.+.+. +||.+... +...|+||.++++++.| ..||+||||+||.+++|+|||||||
T Consensus 302 ~vyLD~~~l~~e~~~-~l~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAa 380 (897)
T PRK13800 302 PIYLKVSHLPEETLS-ALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAA 380 (897)
T ss_pred CEEEECCCCCHHHHH-HHHHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEec
Confidence 799999999987765 67665543 23479999999999754 5577889999999999999999999
Q ss_pred cccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccc--cccccccccccccCcccccccch-hhhhcHHHHHHH
Q 006397 456 GEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI--DLSASNWWTRTVVPKSLGCNVMH-NILRRTKEVRKE 532 (647)
Q Consensus 456 Ge~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 532 (647)
|||+|+ ++|+|++|+|||++||++|++|+.+... +.... ...... .. . ...+. .....+.+++++
T Consensus 381 GE~a~~--------~~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~-~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~ 448 (897)
T PRK13800 381 GDLACV--------PHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPAD-QLAEAH-EL-I-YRPLRHPDGPPQPQVEYK 448 (897)
T ss_pred hhccCc--------chhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHH-HHHHHH-HH-H-hchhhccCCCChHHHHHH
Confidence 999863 2489999999999999999998754211 01000 000000 00 0 00000 001234578999
Q ss_pred HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhhccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc--cc
Q 006397 533 LQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL--HY 610 (647)
Q Consensus 533 l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~--h~ 610 (647)
||++||+|+||+|++++|++||++|++|++++..+ ...+++++++++|++||+++|+++++|||+|+||||+ ||
T Consensus 449 l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~----~~~~~~~l~~~~e~~n~l~~a~~i~~aAl~R~ESRG~~~H~ 524 (897)
T PRK13800 449 LRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGM----GARTPHELMRCAEVSFIRDCAEMAARSSLTRTESRWGLYHD 524 (897)
T ss_pred HHHHHHcccCccchHHHHHHHHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc
Confidence 99999999999999999999999999999887653 2334678899999999999999999999999999999 99
Q ss_pred ccCCCCCccCCCCCeeec
Q 006397 611 MVDFPHVEENKRLPTIIL 628 (647)
Q Consensus 611 R~D~P~~~~~~~~~~~~~ 628 (647)
|+|||++||++|++++++
T Consensus 525 R~DyP~~~d~~w~~~~~~ 542 (897)
T PRK13800 525 RADLPERDDASWGYHLNL 542 (897)
T ss_pred cCCCCCCChHhhhhheee
Confidence 999999999888887764
No 35
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=7e-77 Score=607.85 Aligned_cols=539 Identities=38% Similarity=0.550 Sum_probs=465.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCC--CCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP--SDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~--~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
..||.+|||+|.||+.+|+.+++.| +++++.|-.+..+++..++||+++.+.. .|+|+.|+.|+.+.+.++++++.+
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i 133 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI 133 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence 3499999999999999999999999 9999999999999999999999998875 489999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc--------ccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcc
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHAADMTGREIERALLEAVVSDPNISVFEH 235 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~--------~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~ 235 (647)
..+..+.+..+..++.+|.+|++.++|+++...+++++ ..|+++..+.+|..+...|+.+..+. +..++-.
T Consensus 134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~ 212 (642)
T KOG2403|consen 134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE 212 (642)
T ss_pred hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence 99999999999999999999999999999988888877 67888889999999999999998886 7777777
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeeccccccc
Q 006397 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 236 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q 315 (647)
....+++.+. + .+.|++..+..++....++++.+|+|||++++.|...+++...||||.+|+.++|+.+.+|||+|
T Consensus 213 yfa~dll~~~-g---~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvq 288 (642)
T KOG2403|consen 213 YFALDLLMSQ-G---ECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQ 288 (642)
T ss_pred HHHHHHHHhc-c---CceEEEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceee
Confidence 7788888764 5 67888888888898899999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCcccccccccc-ccCchhHHHHHHHHHHHhcC-----Cc
Q 006397 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKKRN-----EK 389 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~-~l~~rd~~~~~i~~~~~~~~-----~~ 389 (647)
|||+.+.+.| .+++|..+++||+++|..|+|||+.|.+.. ++++||++++++..++.+++ ..
T Consensus 289 fhpt~i~g~G------------cliteg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd 356 (642)
T KOG2403|consen 289 FHPTGIYGAG------------CLITEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKD 356 (642)
T ss_pred eeeecccccc------------eeeeecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCC
Confidence 9999988653 589999999999999999999999999874 89999999999999988753 36
Q ss_pred eEEEeCCCCChhHHHhhChhHHHH-HHHcCCCCCCCcEEEeeeeceecceeEeCCCC----------cccccCccccccc
Q 006397 390 YVLLDISHKPTEKILSHFPNIAAE-CLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEV 458 (647)
Q Consensus 390 ~v~lD~~~~~~~~~~~~~~~~~~~-~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~----------~T~ipGLyAaGe~ 458 (647)
.+|+++.+.+.+.++.++|.+... ....|+|.+++|+||.|..||.||||.++.++ .+.|||||||||+
T Consensus 357 ~~~l~l~h~p~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEa 436 (642)
T KOG2403|consen 357 HVYLQLSHLPPEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEA 436 (642)
T ss_pred ccchhhccCChhhhcccCCCcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccccccccccceeehhHH
Confidence 799999999999999999988764 45679999999999999999999999988777 4689999999999
Q ss_pred ccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcccc-cccccccccccccCcccccccchhhhhcHHHHHHHHHHHH
Q 006397 459 ACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSI-DLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIM 537 (647)
Q Consensus 459 a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 537 (647)
+|.++|||||||.|||++.+|||+..|.+++..++.... .+-..+.+.+...... ..+-.+......++|.+||+.|
T Consensus 437 ac~svHGANRLgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~ld--~lr~~~gsi~TselRl~MQksM 514 (642)
T KOG2403|consen 437 ACASVHGANRLGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVANLD--KLRFADGSIRTSELRLEMQKTM 514 (642)
T ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccchHHHHH--hhhcccCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999998876533210 0000000000000000 0000111246789999999999
Q ss_pred HhcCccccCHHHHHHHHHHHHHHHHHHHHhh-hccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCCCC
Q 006397 538 WRYVGIVRSTTSLQTAEWRIDELEAEWETYL-FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPH 616 (647)
Q Consensus 538 ~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~ 616 (647)
|++++|+|..+.|+++..+|.+|.++++++. ++++.--+.++.|.+||+||+.||..++.+|++||||||+|+|+|||.
T Consensus 515 qnhaaVFR~g~~LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~ 594 (642)
T KOG2403|consen 515 QKHAAVFRVGSVLQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPV 594 (642)
T ss_pred hhcceEEEechHHHHHHHHHHHHHhHHhhhccccccceechhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccccc
Confidence 9999999999999999999999999998865 556611256789999999999999999999999999999999999999
Q ss_pred CccCCCCCeee--cC-CCccccccccccccC
Q 006397 617 VEENKRLPTII--LP-SLVNCTWSSRQLHKL 644 (647)
Q Consensus 617 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 644 (647)
++|++|.++++ +. .+.+.+|.-+|++.-
T Consensus 595 R~DehWrKHTlsy~~~~tg~Vtl~YRpVidk 625 (642)
T KOG2403|consen 595 RIDEHWRKHTLSYWDVGTGKVTLEYRPVIDK 625 (642)
T ss_pred chhhhhccceeeeecCCCceEEEEEeecccc
Confidence 99996666544 33 667899999999753
No 36
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=3.6e-64 Score=542.00 Aligned_cols=428 Identities=39% Similarity=0.662 Sum_probs=363.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.++||||||+|.|||+||+.|+ .| +|+||||....+|+|.+++||++... ..++++.++.++++.+.+.+++++++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~-~~d~~~~~~~d~~~~g~~~~d~~lv~~ 80 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR-NKDDITSFVEDTLKAGQYENNLEAVKI 80 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC-CCCCHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4689999999999999999985 69 99999999999999999999998554 457899999999999999999999999
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+++++++.++||+++|++|....+ .+.+...++|+..|+++..+.+|..+...|.+.++++.||+|++++.+++|+.+
T Consensus 81 ~~~~s~e~i~wL~~~Gv~f~~~~~-~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~- 158 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEK-ELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN- 158 (433)
T ss_pred HHHHHHHHHHHHHHcCCccccCCC-ceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec-
Confidence 999999999999999999986543 334456788888899888888899999999998876569999999999999976
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCC
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g 325 (647)
++ +|.||.+.+ +++...|.|+.|||||||++.+|..++++..++|||+.|++++|+.+.+|+|+|+||+.+...+
T Consensus 159 ~~---~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p~~~~~~~ 233 (433)
T PRK06175 159 DN---TCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEET 233 (433)
T ss_pred CC---EEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEeceEeccCC
Confidence 55 899987654 3555679999999999999999998889899999999999999999999999999998775422
Q ss_pred CCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChhHHHh
Q 006397 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILS 405 (647)
Q Consensus 326 ~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~~~~~ 405 (647)
.. ...+++++.++++|+++||.+|+||++ |+.+|+++++++.+++.+.+..++|+|.++++.+.+..
T Consensus 234 ~~-------~~~~l~~~~~~~~g~ilVN~~G~RF~~------E~~~~~~~~~ai~~~~~~~~~~~v~~D~~~~~~~~~~~ 300 (433)
T PRK06175 234 IE-------GKKFLISESVRGEGGKLLNSKGERFVD------ELLPRDVVTKAILEEMKKTGSNYVYLDITFLDKDFLKN 300 (433)
T ss_pred CC-------CcceEeehhhcCCceEEECCCCCChhh------ccccHHHHHHHHHHHHHhcCCCeEEEecccCcHHHHHH
Confidence 10 114778888899999999999999997 56789999999999987665568999999999888888
Q ss_pred hChhHHHHHHHcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHH
Q 006397 406 HFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 485 (647)
Q Consensus 406 ~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag 485 (647)
++|++++.+.+.|+|+.++++++.|..||++|||+||.++||+|||||||||++|+|+||+||++||||++|+|||++||
T Consensus 301 ~~~~~yn~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag 380 (433)
T PRK06175 301 RFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGA 380 (433)
T ss_pred HHHHHHHHHHHhCcCCCCCcEEEEcceeeecCCEEECCCccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcccccccccccccccccCcccccccchhhhhcHHHHHHHHHHHHHhcCccccCHHHHHHHHH
Q 006397 486 QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 555 (647)
Q Consensus 486 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~g~~r~~~~L~~al~ 555 (647)
++|+......... . ...+. .......+.++++++|++. +.|..+.|++++.
T Consensus 381 ~~a~~~~~~~~~~-------~-~~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 431 (433)
T PRK06175 381 EKINSEIDNIKLN-------I-TKVYT---------LKHDVEYYSLLNKKIIIKE--IEKLRGDLKDELV 431 (433)
T ss_pred HHHHHhhhccccc-------c-ccccc---------cccchhHHHHHHHHHHHHH--HHhhHHHHHHHhh
Confidence 9987654221110 0 00000 0012334456677888776 8888888887664
No 37
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-50 Score=387.22 Aligned_cols=373 Identities=31% Similarity=0.420 Sum_probs=296.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcCCCCCHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
.|||||+|.|||+|+..+-..| .|+|+||....+|+|.-+..||+... ...|+++.++.|++..+.....|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 6999999999999999999998 99999999999999999999998764 347999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHH-cCCccccCCCCcccccccCCccccceeecC--CCcHHHHHHHHHHHHHcC-----CCcEEE
Q 006397 162 TVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAA--DMTGREIERALLEAVVSD-----PNISVF 233 (647)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~-~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~--~~~g~~~~~~L~~~~~~~-----~gv~i~ 233 (647)
+++.++.++..+++||.. .++.++ .+.+.|||+.+|+.... ...|..+..+|..++++. .-++|.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld-------~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~ 163 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLD-------LLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKIL 163 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchH-------HHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhh
Confidence 999999999999999985 677665 35677899998886532 235778888887776542 248999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc-------C------CCCCCCCCCcchhHHH
Q 006397 234 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------Y------PSTTNPLVATGDGMAM 300 (647)
Q Consensus 234 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~-------~------~~~~~~~~~~Gdg~~~ 300 (647)
.+++|++|+.+ +| +|.||+..| .+|+...+.++.||+|||||+.- | ..++|-...+|||+.|
T Consensus 164 ~nskvv~il~n-~g---kVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tGDgqk~ 238 (477)
T KOG2404|consen 164 LNSKVVDILRN-NG---KVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTGDGQKM 238 (477)
T ss_pred hcceeeeeecC-CC---eEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccCcHHHH
Confidence 99999999965 67 899999998 46777789999999999999851 2 2578888999999999
Q ss_pred HHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHH
Q 006397 301 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID 380 (647)
Q Consensus 301 a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~ 380 (647)
....||.++||+.+|.||+++.++..+-.-+ .||..|++||.|++++|..|.||.+ ||..||++...|.
T Consensus 239 l~klga~liDmd~vqvhptgfidpndr~~~w-----KfLAAEalRG~GaiLl~s~GrRF~n------ELg~RDyvTgei~ 307 (477)
T KOG2404|consen 239 LMKLGASLIDMDQVQVHPTGFIDPNDRTALW-----KFLAAEALRGLGAILLNSTGRRFGN------ELGTRDYVTGEIQ 307 (477)
T ss_pred HHHhCccccccceeEecccCccCCCCchhHH-----HHHHHHHhccCceEEEeccchhhhc------ccccchhhhHhHH
Confidence 9999999999999999999998765432111 5788999999999999999999997 7788999888776
Q ss_pred HHHHhcCCceEEEeCCCCChhHHH------------hhChhHHHHHHHcCC---------------------CCC-----
Q 006397 381 DQLKKRNEKYVLLDISHKPTEKIL------------SHFPNIAAECLKYGL---------------------DIT----- 422 (647)
Q Consensus 381 ~~~~~~~~~~v~lD~~~~~~~~~~------------~~~~~~~~~~~~~G~---------------------d~~----- 422 (647)
+...-.....+++-+.....+.+. +++ ...+++.++++ ||.
T Consensus 308 kl~~P~ednrallVmnea~~e~~~n~inFY~~K~l~kK~-~~~el~s~ln~t~sel~ttl~eY~~~~~g~~~D~fgrk~f 386 (477)
T KOG2404|consen 308 KLKCPIEDNRALLVMNEANYEAFGNNINFYMFKKLFKKY-ESAELASALNITESELKTTLEEYSKSFTGKSEDPFGRKVF 386 (477)
T ss_pred hhcCCcccceeEEEecHhHHHHHhhhhhhHhHHHHHHHh-hHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCCCcCCCccc
Confidence 632111123345444322222211 111 12222222332 211
Q ss_pred -------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHH
Q 006397 423 -------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 423 -------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
.++ -+|.|..||+|||++||+..| ..|.|||||||++ ||+||+|||||+||.||+||||.||+
T Consensus 387 ~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~ng~vi~GlfAAGEvs-GGvHGaNRLgGsSLLeCVVFGr~Ag~ 465 (477)
T KOG2404|consen 387 PVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDKNGKVIVGLFAAGEVS-GGVHGANRLGGSSLLECVVFGRTAGK 465 (477)
T ss_pred cCCCCCccceeEEEEEeeeEEEeccceEechhhhhhccCCcEeeeeeEcceec-cccccccccCcccceeeeeecccchh
Confidence 112 378899999999999998877 3688999999998 99999999999999999999999987
Q ss_pred H
Q 006397 487 P 487 (647)
Q Consensus 487 ~ 487 (647)
.
T Consensus 466 ~ 466 (477)
T KOG2404|consen 466 A 466 (477)
T ss_pred h
Confidence 3
No 38
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=9.1e-48 Score=423.04 Aligned_cols=375 Identities=30% Similarity=0.444 Sum_probs=288.2
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
++.++||||||+|+||++||+.|++.| +|+||||.+..+|++..+.|+++... ...++++.++.++++.+.+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 137 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGG 137 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCC
Confidence 345799999999999999999999999 99999999988888888888876543 2357788999999999999
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCC--CcHHHHHHHHHHHHHcCCCcEEEc
Q 006397 157 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
..++++++.+++++.+.++||+++|++|.... ..+++...+..++.+ ..+..+...|.+.+++. |+++++
T Consensus 138 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~-------~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~-gv~i~~ 209 (506)
T PRK06481 138 TNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-------ITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFV 209 (506)
T ss_pred CCCHHHHHHHHhccHHHHHHHHHcCceEeecc-------cCCCCCCCceeccCCCCCChHHHHHHHHHHHHHc-CCeEEe
Confidence 99999999999999999999999999986421 123333334433322 24667888999988875 999999
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc------C------CCCCCCCCCcchhHHHHH
Q 006397 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI------Y------PSTTNPLVATGDGMAMAH 302 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~------~~~~~~~~~~Gdg~~~a~ 302 (647)
++.|++|+.+ ++ +|+||.+.. .+++...|.|+.||+||||++.. | ..+.++..++|||+.|++
T Consensus 210 ~t~v~~l~~~-~g---~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~tGdGi~ma~ 284 (506)
T PRK06481 210 NADVTKITEK-DG---KVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIE 284 (506)
T ss_pred CCeeEEEEec-CC---EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCCChHHHHHHH
Confidence 9999999875 56 899998764 34566689999999999999864 1 124567789999999999
Q ss_pred HcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHH
Q 006397 303 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 382 (647)
Q Consensus 303 ~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~ 382 (647)
++||.+.+|+++|+||+..... .+++.+.+++.++++||.+|+||+++ ..+++.+++++..+
T Consensus 285 ~aGA~~~~~~~~~~~p~~~~~~------------~~~~~~~~~~~~~i~Vn~~G~RF~nE------~~~~~~~~~~~~~~ 346 (506)
T PRK06481 285 KLGGTTVDMDQIQIHPTVQQSK------------SYLIGEAVRGEGAILVNQKGKRFGNE------LDTRDKVSAAINKL 346 (506)
T ss_pred HcCCCccCchhhhhCCCccCCC------------cceehhhccCCceEEECCCCCCCCCC------CccHHHHHHHHHhC
Confidence 9999999999999998754321 34455566778899999999999985 45667677766554
Q ss_pred HHhcCCceEEEeCCCCC----hhHH-H----hhChhHHHHHHHc--------------------CCC------------C
Q 006397 383 LKKRNEKYVLLDISHKP----TEKI-L----SHFPNIAAECLKY--------------------GLD------------I 421 (647)
Q Consensus 383 ~~~~~~~~v~lD~~~~~----~~~~-~----~~~~~~~~~~~~~--------------------G~d------------~ 421 (647)
. +...++++|....+ .+.. . .+.+++.+++++. |.| +
T Consensus 347 ~--~~~~~~i~D~~~~~~~~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~~g~D~~fgr~~~~~~~i 424 (506)
T PRK06481 347 P--EKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDL 424 (506)
T ss_pred c--CCcEEEEECHHHHhhhhhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCC
Confidence 2 12245666753211 0000 0 0112222222222 222 2
Q ss_pred CCCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 422 TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 422 ~~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.+.| +++.|..|+|+|||+||+++| ++|||||||||++ +|+||.||++|+++++|++|||+||++|++++
T Consensus 425 ~~~PfYai~~~p~~~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 425 STGPYYAIKIAPGIHYTMGGVKINTNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred cCCCEEEEEEecceeecccCeEECCCceEEcCCCCEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 3455 789999999999999999998 5999999999998 89999999999999999999999999999886
Q ss_pred h
Q 006397 493 K 493 (647)
Q Consensus 493 ~ 493 (647)
+
T Consensus 504 ~ 504 (506)
T PRK06481 504 K 504 (506)
T ss_pred h
Confidence 4
No 39
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=1.1e-44 Score=430.50 Aligned_cols=393 Identities=30% Similarity=0.427 Sum_probs=296.3
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC-------CCCCHHHHHHHHHHhc-C
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAG-A 155 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g-~ 155 (647)
.+.++||||||+|.||++||+++++.| +|+||||....+|++.+++||+..... ..|+.+.+..+++..+ .
T Consensus 406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence 356799999999999999999999999 999999999888988888888876532 3577787878877765 5
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCC-------CcHHHHHHHHHHHHHcC-
Q 006397 156 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD-------MTGREIERALLEAVVSD- 227 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~-------~~g~~~~~~L~~~~~~~- 227 (647)
+..++++++.+++++.+.++||+++|++|... ...+++..++..+..+ ..|..+...|.+.+++.
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~-------~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~ 558 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVL-------SQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKL 558 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceee-------eccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhc
Confidence 78999999999999999999999999998642 1235555555554321 12566777887777642
Q ss_pred -CCcEEEcceEEEEEEecCC----C-CCceEEEEEEEec--CCCeEEEEEcCeEEECCCcccccC----------C----
Q 006397 228 -PNISVFEHHFAIDLLTTLD----G-PDAVCHGVDTLNV--ETQEVVRFISKVTLLASGGAGHIY----------P---- 285 (647)
Q Consensus 228 -~gv~i~~~~~v~~l~~~~~----g-~~~~v~Gv~~~~~--~~G~~~~i~A~~VVlAtGg~~~~~----------~---- 285 (647)
.||+|++++++++|+.+++ | ...+|+||.+.+. .+|+...|.||.||||||||+++. +
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~y~p~~~~ 638 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSG 638 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHHhCccccC
Confidence 4999999999999998642 1 1127999999763 267778899999999999999743 1
Q ss_pred -CCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccc
Q 006397 286 -STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 364 (647)
Q Consensus 286 -~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~ 364 (647)
.+++++.++|||+.||+++||.+.+|+++|+||+.+..+..+..+ ..++..+.+++.++++||.+|+||++
T Consensus 639 ~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~g~ilVN~~GkRF~n--- 710 (1167)
T PTZ00306 639 FPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNR-----TKYLGPEALRGSGGVLLNKNGERFVN--- 710 (1167)
T ss_pred CCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCc-----ccceeeehhcCCceEEECCCCCCccc---
Confidence 234667799999999999999999999999999865432211111 13445566677889999999999997
Q ss_pred cccccCchhHHHHHHHHHHHhc----CC--ceEEEeCCCCCh---h---------HHHhhChhHHHHHHHcCCCC-----
Q 006397 365 ERAELAPRDVVARSIDDQLKKR----NE--KYVLLDISHKPT---E---------KILSHFPNIAAECLKYGLDI----- 421 (647)
Q Consensus 365 ~~~~l~~rd~~~~~i~~~~~~~----~~--~~v~lD~~~~~~---~---------~~~~~~~~~~~~~~~~G~d~----- 421 (647)
|+.+++.+++++..+.... +. .++.+|...... . .+..+..++.+++.+.|+|+
T Consensus 711 ---E~~~~~~~~~ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~~L~a 787 (1167)
T PTZ00306 711 ---ELDLRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVENLHR 787 (1167)
T ss_pred ---ccCcHHHHHHHHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHHHHHH
Confidence 4567788888887765321 11 123344321100 0 00112345555555555543
Q ss_pred ----------------------------CCCc---EEEeeeeceecceeEeCCCCc--------------ccccCccccc
Q 006397 422 ----------------------------TSQP---IPVVPAAHYMCGGVRAGLQGE--------------TNVRGLYVAG 456 (647)
Q Consensus 422 ----------------------------~~~~---i~v~p~~~~~~GGi~vD~~~~--------------T~ipGLyAaG 456 (647)
.+.| +++.|..|+|+||++||.++| ++||||||||
T Consensus 788 TV~rYN~~~~~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIpGLYAAG 867 (1167)
T PTZ00306 788 TLETYERLSTKKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAG 867 (1167)
T ss_pred HHHHHHHHHhcCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeCceEecc
Confidence 1234 478899999999999998766 3799999999
Q ss_pred ccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhccc
Q 006397 457 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS 496 (647)
Q Consensus 457 e~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~ 496 (647)
|++ ||+||.+|++|+++++|++|||+||++|+++++...
T Consensus 868 e~~-gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 868 EVT-GGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred eec-cccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 998 799999999999999999999999999999987654
No 40
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=100.00 E-value=5.9e-44 Score=386.73 Aligned_cols=365 Identities=37% Similarity=0.539 Sum_probs=283.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC-------CCCCHHHHHHHHHHhcCCCCCHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDDE 161 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~~~~~~ 161 (647)
||||||+|.|||+||+.|+++| +|+||||.+..+|++.++.|++..... ..|+++.++.+++....+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999 999999999888888888887776542 23679999999999999989999
Q ss_pred HHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcccc-ceee-cCCC------cHHHHHHHHHHHHHcCCCcEEE
Q 006397 162 TVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-RIVH-AADM------TGREIERALLEAVVSDPNISVF 233 (647)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~-r~~~-~~~~------~g~~~~~~L~~~~~~~~gv~i~ 233 (647)
+++.+++++.+.++||+++|++|....++.+.....+.+... +... ..+. .+..+...|.+.+++. |++|+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-gv~i~ 159 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEA-GVDIR 159 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHT-TEEEE
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhc-Ceeee
Confidence 999999999999999999999999866666555666666655 4444 3333 6889999999999986 89999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc----------cCCCCCCCCCCcchhHHHHHH
Q 006397 234 EHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH----------IYPSTTNPLVATGDGMAMAHR 303 (647)
Q Consensus 234 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~----------~~~~~~~~~~~~Gdg~~~a~~ 303 (647)
+++++++|+++ ++ +|+||.+.+..+|+.+.|+|+.|||||||++. .+..+.+++.++|||+.|+++
T Consensus 160 ~~~~~~~Li~e-~g---~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~ma~~ 235 (417)
T PF00890_consen 160 FNTRVTDLITE-DG---RVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAMALR 235 (417)
T ss_dssp ESEEEEEEEEE-TT---EEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHHHHH
T ss_pred ccceeeeEEEe-CC---ceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhhhhc
Confidence 99999999997 66 99999999777899999999999999999997 444566778999999999999
Q ss_pred cCCeecc--cccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHH-
Q 006397 304 AQAVISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSID- 380 (647)
Q Consensus 304 aGa~l~~--~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~- 380 (647)
+||.+.+ |++.+++|..+..... + ...++...+...++++||.+|+||++ |..+++.+..++.
T Consensus 236 aGa~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~g~i~vn~~G~Rf~~------e~~~~~~~~~~~~~ 301 (417)
T PF00890_consen 236 AGAALSNDPMEFIQWGPPSVPGIRD---P-----SGILITEALPGPGGIWVNADGERFMN------EDASYDDVAQAILQ 301 (417)
T ss_dssp TTCCEESTTTTCEEEEEEEETSTCC---T-----TTSBHHTHHHHTT-EEEETTSSBTHG------GGS-HHHHHHHHH-
T ss_pred cCccccCccchhhccCCcccccccc---c-----ccchhhhhhccceeEEEcCCCcCccc------ccccccHHHHHHHH
Confidence 9999999 9999999987763211 1 02233445666789999999999996 4456777888887
Q ss_pred HHHHhcCC-ceEEEeCCC-CChhHHHhhChhHHHHHHHcCCC--------CCCCcE-------EEeeeeceecceeEeCC
Q 006397 381 DQLKKRNE-KYVLLDISH-KPTEKILSHFPNIAAECLKYGLD--------ITSQPI-------PVVPAAHYMCGGVRAGL 443 (647)
Q Consensus 381 ~~~~~~~~-~~v~lD~~~-~~~~~~~~~~~~~~~~~~~~G~d--------~~~~~i-------~v~p~~~~~~GGi~vD~ 443 (647)
.++..... ..+|+++++ ++.+.+.+.+..+...+.. |.| +.+.+. ++.|..|+++|||+||+
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~~L~~tv~~yn~~~~~-g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~vd~ 380 (417)
T PF00890_consen 302 REIREPRGDAYVYLIFDGGIDPEGLAATVERYNEECEA-GVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKVDE 380 (417)
T ss_dssp HHHHTTTSECBEEEEETTTSHHHHHHHHCHHHHHHHHH-TSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEBET
T ss_pred HhhhcccCCcceEEeeccccChhhhhhhhhHHHHhhhc-ccccccccccccccCcccccccccccccccceeeEEeeeCc
Confidence 44444333 467899887 8888888888766665543 333 444433 48899999999999999
Q ss_pred CCcc------cccCcccccccccCCCCCCCccCchhh
Q 006397 444 QGET------NVRGLYVAGEVACTGLHGANRLASNSL 474 (647)
Q Consensus 444 ~~~T------~ipGLyAaGe~a~gG~~Ga~rl~g~sl 474 (647)
++|+ +|||||||||++|+++||+++++|++|
T Consensus 381 ~~~vl~~~g~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 381 DAQVLDADGQPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp TSEEETTTCEEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CcCccCCCCCEeCCEEEEEcccccccCCccCCcccCC
Confidence 9998 999999999999789999999999986
No 41
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=100.00 E-value=1.6e-44 Score=393.21 Aligned_cols=366 Identities=36% Similarity=0.510 Sum_probs=277.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCCccccccCCeeeecC-------CCCCHHHHHHHHHHhcCCCCCH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g~s~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
||||||+|+||++||+.|+++| +|+||||.+..+|+|.++.|+++.... ..++++.++.+++..+.+..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 899999999988888888888875532 3578888999999888889999
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCC--CcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006397 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~--~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
++++.+++.+.+.++|++ +++.+.... ....+++..++..++.+ ..+..+...|.+.+++. |++++++++|
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~-gv~i~~~~~v 153 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDD-----LIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKE-GIDTRLNSKV 153 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeecc-----ccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHc-CCEEEeCCEe
Confidence 999999999999999999 666654321 11223344444443332 35778899999999875 9999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc------cC-C-----CCCCCCCCcchhHHHHHHcCC
Q 006397 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH------IY-P-----STTNPLVATGDGMAMAHRAQA 306 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~------~~-~-----~~~~~~~~~Gdg~~~a~~aGa 306 (647)
++|+.++++ +|+||.+.+ .+++...+.++.||+|||+++. .| | .+.+++.++|||+.|++++||
T Consensus 154 ~~l~~~~~g---~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~~aGa 229 (439)
T TIGR01813 154 EDLIQDDQG---TVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAEKIGA 229 (439)
T ss_pred eEeEECCCC---cEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHHHcCC
Confidence 999987566 899998875 4566667899999999999997 33 2 345667899999999999999
Q ss_pred eecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhc
Q 006397 307 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 386 (647)
Q Consensus 307 ~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~ 386 (647)
.+.+|+++|+||......+ .++..+.++..++++||.+|+||+++ ..+++.+++++..+..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~vn~~G~RF~~E------~~~~~~~~~~~~~~~~-- 290 (439)
T TIGR01813 230 ALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFMNE------LATRDTVSDAILAQPG-- 290 (439)
T ss_pred CccCCchhheecccccCCc-----------ceeehhhcccCcEEEECCCCCCcccc------CCcHHHHHHHHHhCCC--
Confidence 9999999999987553211 23344455667789999999999984 4556667776655432
Q ss_pred CCceEEEeCCCCCh----hHH-----HhhChhHHHHHHHc--------------------CCCC------------CCCc
Q 006397 387 NEKYVLLDISHKPT----EKI-----LSHFPNIAAECLKY--------------------GLDI------------TSQP 425 (647)
Q Consensus 387 ~~~~v~lD~~~~~~----~~~-----~~~~~~~~~~~~~~--------------------G~d~------------~~~~ 425 (647)
...++++|...... +.. ..+.+++.+++.+. |.|+ .+.|
T Consensus 291 ~~~~~i~d~~~~~~~~~~~~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~~g~D~~f~r~~~~~~~i~~~P 370 (439)
T TIGR01813 291 KSAYLIFDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYNEYVASGKDTPFGRPMDMPDDLSKSP 370 (439)
T ss_pred CceEEEECHHHHHhhhhHHHHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCCC
Confidence 12345555321100 000 00112222222222 4443 2456
Q ss_pred ---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHH
Q 006397 426 ---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 426 ---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
+++.|..|+|+|||+||+++| ++|||||||||++ +|+||.||++|+++++|++|||+||+
T Consensus 371 fya~~~~~~~~~t~GGl~~d~~~~vl~~~g~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 371 YYAIKVTPGVHHTMGGVKINTKAEVLDAQGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EEEEEEEcCccccccCeEECCCCeEECCCCCEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 889999999999999999999 5899999999998 79999999999999999999999984
No 42
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=6.8e-43 Score=384.70 Aligned_cols=372 Identities=24% Similarity=0.281 Sum_probs=269.9
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeee--------cCCCCCHHHHHHHHHHhcC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV--------LCPSDSVESHMQDTIVAGA 155 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~--------~~~~d~~~~~~~~~~~~g~ 155 (647)
++.++||||||+|.||++||++|++.| +|+||||....+|++..+.|.+... .+..++++.++.++...+.
T Consensus 17 ~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~ 96 (492)
T PRK07121 17 WDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVG 96 (492)
T ss_pred cCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999999 9999999998888777765444321 1235788888888888888
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCccc--------ccccC--------C--ccccceeec---CCC-cH
Q 006397 156 YLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLH--------LAREG--------G--HSHHRIVHA---ADM-TG 213 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~--------~~~~g--------g--~~~~r~~~~---~~~-~g 213 (647)
+.+++++++.+++++.+.++||+++|++|.....+.+. ....+ . +..++.... ... .+
T Consensus 97 ~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 176 (492)
T PRK07121 97 PGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGG 176 (492)
T ss_pred CCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCch
Confidence 88999999999999999999999999998653211100 00000 0 011121111 111 47
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------C-C
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-P 285 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------~-~ 285 (647)
..+...|.+.+++. |++|+++++|++|+.+++| +|+||++.+ +++...|+| +.||+||||++.. | +
T Consensus 177 ~~~~~~L~~~~~~~-gv~i~~~~~v~~l~~~~~g---~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~p 250 (492)
T PRK07121 177 AMLMDPLAKRAAAL-GVQIRYDTRATRLIVDDDG---RVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARYAP 250 (492)
T ss_pred HHHHHHHHHHHHhC-CCEEEeCCEEEEEEECCCC---CEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHhCC
Confidence 78899999989874 9999999999999987556 899998853 455668999 9999999999862 1 1
Q ss_pred -----CCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccc
Q 006397 286 -----STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 360 (647)
Q Consensus 286 -----~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~ 360 (647)
.+.+++.++|||+.||+++||.+.+|+++|+++.... | .. + .++++||.+|+||+
T Consensus 251 ~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~-------~------~~-----~--~~~i~Vn~~G~RF~ 310 (492)
T PRK07121 251 AYAGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYP-------P------SA-----L--LRGILVNARGQRFV 310 (492)
T ss_pred cccCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccC-------C------CC-----c--CCeEEECCCCCEee
Confidence 2445668999999999999999999999987643211 1 00 1 25799999999999
Q ss_pred cccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCCChh------HH------HhhChhHHHHHHHcCCCCC------
Q 006397 361 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTE------KI------LSHFPNIAAECLKYGLDIT------ 422 (647)
Q Consensus 361 ~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~~~~------~~------~~~~~~~~~~~~~~G~d~~------ 422 (647)
++. .+++.++.++..+. .+..++++|....... .. ..+.+++.+++++.|+|+.
T Consensus 311 nE~------~~~~~~~~~~~~~~--~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~tv 382 (492)
T PRK07121 311 NED------TYGARIGQFILEQP--GGTAYLIVDEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQATV 382 (492)
T ss_pred cCC------CcHHHHHHHHHhcc--CCcEEEEEeHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHHH
Confidence 853 34455555554432 1224555664321100 00 0123445555555554422
Q ss_pred --------------------------CCc---EEEee----eeceecceeEeCCC-Ccc------cccCcccccccccCC
Q 006397 423 --------------------------SQP---IPVVP----AAHYMCGGVRAGLQ-GET------NVRGLYVAGEVACTG 462 (647)
Q Consensus 423 --------------------------~~~---i~v~p----~~~~~~GGi~vD~~-~~T------~ipGLyAaGe~a~gG 462 (647)
+.| +++.| ..++|+||++||++ +|+ +|||||||||++ +|
T Consensus 383 ~~yN~~~~~G~D~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~-gg 461 (492)
T PRK07121 383 DAYNRAAAGGEDPPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCA-SG 461 (492)
T ss_pred HHHHHHhhcCCCcccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECCCCCCcCceEeccccc-cc
Confidence 122 34555 89999999999999 984 699999999997 79
Q ss_pred CCCCCccCchhhHHHHHHHHHHHHHHHHh
Q 006397 463 LHGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 463 ~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
+||.+|++|++|++|++|||+||++|++.
T Consensus 462 ~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 462 IASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 99999999999999999999999998764
No 43
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=2.9e-42 Score=378.11 Aligned_cols=378 Identities=22% Similarity=0.255 Sum_probs=264.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC--CCCccccccCCeeeecC-------CCCCHHHHHHHHHHhcCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAVLC-------PSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~--~~g~s~~a~Ggi~~~~~-------~~d~~~~~~~~~~~~g~~ 156 (647)
.++||||||+|+||++||+.|+++| +|+||||.+. .+|++.++.| +..... ..++++.++.+++..+.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 4689999999999999999999999 9999999874 4666666655 543322 235678889999988888
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcce
Q 006397 157 LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHH 236 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~ 236 (647)
..++++++.+++.+.+.++|+.++|++|.....+...... .+..... .+..+...|.+.+++. |+++++++
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~------~~~~~~g--~g~~l~~~l~~~~~~~-gv~i~~~t 152 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVAR------TNAFFWG--GGKALVNALYRSAERL-GVEIRYDA 152 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCC------CCeeecC--CHHHHHHHHHHHHHHC-CCEEEcCC
Confidence 8999999999999999999999999998764443221100 1111111 2677888999888874 99999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc-------CCC------CCCCCCCcchhHHHHHH
Q 006397 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHR 303 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~-------~~~------~~~~~~~~Gdg~~~a~~ 303 (647)
+|++|+.+ ++ +|+||.+.+ .+++...++|+.||+|||+++.. ++. ..+++.++|||+.|+++
T Consensus 153 ~v~~l~~~-~g---~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~ 227 (466)
T PRK08274 153 PVTALELD-DG---RFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLLKALLD 227 (466)
T ss_pred EEEEEEec-CC---eEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHHHHHHH
Confidence 99999986 56 899998753 34556679999999999998763 221 24567799999999999
Q ss_pred cCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchh--HHHHHHHH
Q 006397 304 AQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRD--VVARSIDD 381 (647)
Q Consensus 304 aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd--~~~~~i~~ 381 (647)
+||.+.+ ++.|+||+.+.... |... ..+ ........++++||.+|+||+++... +.+++ ....++..
T Consensus 228 ~Ga~~~~-~~~~~~~~~~~~~~----~~~~--~~~-~~~~~~~~~~i~vn~~G~RF~nE~~~---~~~~~~~~~~~~~~~ 296 (466)
T PRK08274 228 AGADRIG-DPSQCHAVAIDARA----PLYD--GGI-CTRIDCVPLGIVVNRDGERFYDEGED---FWPKRYAIWGRLVAQ 296 (466)
T ss_pred cCCCccC-CccceeeEeecCCC----CccC--Ccc-eeeecccceEEEEcCCCcEEEecCCc---cccchHHHHHHHHHc
Confidence 9999886 56788887553211 1000 011 11122234579999999999986422 11211 22222222
Q ss_pred HHHhcCCceEEEeCCCCCh---hHH-HhhChhHHHHHHHcCCCC----------------------------------CC
Q 006397 382 QLKKRNEKYVLLDISHKPT---EKI-LSHFPNIAAECLKYGLDI----------------------------------TS 423 (647)
Q Consensus 382 ~~~~~~~~~v~lD~~~~~~---~~~-~~~~~~~~~~~~~~G~d~----------------------------------~~ 423 (647)
+ .....++++|...... ... ..+..++.+++++.|+|+ .+
T Consensus 297 ~--~~~~~~~i~d~~~~~~~~~~~~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~~g~~~~~~~d~~~~~~~~~~~ 374 (466)
T PRK08274 297 Q--PGQIAYQIFDAKAIGRFMPPVFPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVRPGPFDPTVLDDCGTEGLTPPK 374 (466)
T ss_pred C--CCceEEEEeCchhHhhcCcccCCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhccccCCCcccccccccccCCCCc
Confidence 1 1111234455432110 000 001122233333222221 11
Q ss_pred ----Cc--------EEEeeeeceecceeEeCCCCcc------cccCcccccccccCC-CCCCCccCchhhHHHHHHHHHH
Q 006397 424 ----QP--------IPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTG-LHGANRLASNSLLEALVFARRA 484 (647)
Q Consensus 424 ----~~--------i~v~p~~~~~~GGi~vD~~~~T------~ipGLyAaGe~a~gG-~~Ga~rl~g~sl~~a~v~G~~A 484 (647)
.| +++.|..|+|+||++||+++|+ +|||||||||++ +| +||+||++|++|++|++||++|
T Consensus 375 ~~~~~~i~~~Pfya~~~~p~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~-gg~~~g~~y~~g~~l~~~~~~G~ia 453 (466)
T PRK08274 375 SHWARPIDTPPFYAYPVRPGITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMM-AGNVLGKGYPAGVGLTIGAVFGRIA 453 (466)
T ss_pred ccccCccCCCCeEEEEeccceeeecccEEECCCceEECCCCCCCCCceeccccc-ccccccCCCccccchhhhhhhHHHH
Confidence 12 4889999999999999999997 899999999998 57 9999999999999999999999
Q ss_pred HHHHHHhhh
Q 006397 485 VQPSIDHKK 493 (647)
Q Consensus 485 g~~a~~~~~ 493 (647)
|++|+++++
T Consensus 454 g~~aa~~~~ 462 (466)
T PRK08274 454 GEEAARHAQ 462 (466)
T ss_pred HHHHHHHhh
Confidence 999998764
No 44
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-42 Score=376.34 Aligned_cols=379 Identities=21% Similarity=0.244 Sum_probs=268.5
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC-Ceeeec-------CCCCCHHHHHHHHHHhcC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG-GVSAVL-------CPSDSVESHMQDTIVAGA 155 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~G-gi~~~~-------~~~d~~~~~~~~~~~~g~ 155 (647)
++.++||||||+| +|++||++|++.| +|+||||....+|++.++.| |+.... ...++.+..+.++.....
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 82 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVG 82 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhc
Confidence 3457999999999 9999999999999 99999999887888877665 453321 124566666666655555
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHH-cCCccccCC----CCcccccccCCc--cccc------------eee---------
Q 006397 156 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGE----DGNLHLAREGGH--SHHR------------IVH--------- 207 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~~----~g~~~~~~~gg~--~~~r------------~~~--------- 207 (647)
...++++++.+++.+.+.++||++ .|+.|.... .+.......+++ ..+. .++
T Consensus 83 ~~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (513)
T PRK12837 83 DRTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLG 162 (513)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhc
Confidence 667899999999999999999987 599886421 110000000110 0000 000
Q ss_pred -c-CC--CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcC-eEEECCCcccc
Q 006397 208 -A-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGH 282 (647)
Q Consensus 208 -~-~~--~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~ 282 (647)
. .. ..|..+...|.+.+.+..|++|+++++|++|+.+ ++ +|+||++.. +|+...|+|+ .|||||||+++
T Consensus 163 ~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g---~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 163 APPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVE-DG---RVVGAVVER--GGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred cCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CC---EEEEEEEEE--CCcEEEEEeCceEEEeCCCccC
Confidence 0 00 1255677788887776569999999999999986 56 899998753 5667789995 89999999987
Q ss_pred c------CC------CCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcE
Q 006397 283 I------YP------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGI 350 (647)
Q Consensus 283 ~------~~------~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~ 350 (647)
+ |. .+.+++.+||||+.||+++||.+.+|+++|++|......+. ....+...+++
T Consensus 237 n~~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~-------------~~~~~~~~~~i 303 (513)
T PRK12837 237 NDDMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGR-------------SAFALWFTGGI 303 (513)
T ss_pred CHHHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCc-------------ceeccccCceE
Confidence 5 42 45677889999999999999999999999999855422110 01122345789
Q ss_pred EEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC---ceEEEeCCCC-------------C-hhHHH----hhChh
Q 006397 351 LYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE---KYVLLDISHK-------------P-TEKIL----SHFPN 409 (647)
Q Consensus 351 ~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~---~~v~lD~~~~-------------~-~~~~~----~~~~~ 409 (647)
+||.+|+||++ |..+++.+++++..+...+.. .++.+|.... . .+.+. .+..+
T Consensus 304 ~Vn~~GkRF~n------E~~~~~~~~~a~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDT 377 (513)
T PRK12837 304 FVDQHGERFVN------ESAPYDRLGRAVIAEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADT 377 (513)
T ss_pred EECCCCCCccc------CCCcHhHHHHHHHhhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCC
Confidence 99999999997 456778888888776543321 2355564310 0 00011 12234
Q ss_pred HHHHHHHcCCCC--------------------C-----------------------CCc---EEEeeeeceecceeEeCC
Q 006397 410 IAAECLKYGLDI--------------------T-----------------------SQP---IPVVPAAHYMCGGVRAGL 443 (647)
Q Consensus 410 ~~~~~~~~G~d~--------------------~-----------------------~~~---i~v~p~~~~~~GGi~vD~ 443 (647)
+.+++++.|+|+ + +.| +++.|..++|+||++||+
T Consensus 378 leELA~k~gid~~~L~~Tv~~yN~~~~~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~ 457 (513)
T PRK12837 378 LEELAAKIGVPADALTATVARFNGFAAAGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDT 457 (513)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECC
Confidence 444444444331 1 122 466778899999999999
Q ss_pred CCc------ccccCcccccccccCCCCCCCccC-chhhHHHHHHHHHHHHHHHH
Q 006397 444 QGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 444 ~~~------T~ipGLyAaGe~a~gG~~Ga~rl~-g~sl~~a~v~G~~Ag~~a~~ 490 (647)
++| .+|||||||||++ +|++|.+|++ |+++++|++|||+||++|+.
T Consensus 458 ~~qVl~~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 458 AARVLDTDGRPIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred CceEECCCCCEeCCceeccccc-ccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 998 4899999999998 7999999986 89999999999999999864
No 45
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=3.4e-41 Score=372.77 Aligned_cols=383 Identities=19% Similarity=0.260 Sum_probs=267.8
Q ss_pred CccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcC
Q 006397 84 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 155 (647)
Q Consensus 84 ~~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~ 155 (647)
..+.++||||||+| +|++||+.+++.| +|+||||.+..+|++.++.|+++... +..|+.+..+.++.....
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~~~g~~ds~e~~~~y~~~~~~ 90 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLDEAGAGDTLERARTYLDSVVG 90 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHHHhCcchhHHHHHHHHHHHhC
Confidence 35668999999999 8999999999999 99999999888898888877776432 236889999998888888
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHH-cCCccccCCC-CcccccccCCccccceeec-------------------------
Q 006397 156 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHLAREGGHSHHRIVHA------------------------- 208 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~~~-g~~~~~~~gg~~~~r~~~~------------------------- 208 (647)
+..++++++.+++++++.++||++ .++.|..... ..+.....++....|.+++
T Consensus 91 ~~~~~~li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 170 (564)
T PRK12845 91 GSAPAERSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVSIP 170 (564)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCcccccccc
Confidence 889999999999999999999998 6677632211 0000001111100000000
Q ss_pred -----------------------------------------CCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 209 -----------------------------------------ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 209 -----------------------------------------~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
....|..+...|.+.+++ .||+|+.+++|++|+.+ +|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~-~Gv~i~~~t~v~~Li~~-~g 248 (564)
T PRK12845 171 MPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLR-AGIPIWTETSLVRLTDD-GG 248 (564)
T ss_pred ccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHH-CCCEEEecCEeeEEEec-CC
Confidence 002356777888888887 49999999999999975 56
Q ss_pred CCceEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------C-C------CCCCCCCCcchhHHHHHHcCCeeccccc
Q 006397 248 PDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------Y-P------STTNPLVATGDGMAMAHRAQAVISNMEF 313 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------~-~------~~~~~~~~~Gdg~~~a~~aGa~l~~~ef 313 (647)
+|+||++.+ +|+...|.| +.||||||||+++ | + .+.+++.++|||+.|++++||.+.+|++
T Consensus 249 ---~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~ 323 (564)
T PRK12845 249 ---RVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQ 323 (564)
T ss_pred ---EEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCcc
Confidence 899998764 455556777 6999999999985 3 2 2567788999999999999999999999
Q ss_pred ccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh---cCCce
Q 006397 314 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK---RNEKY 390 (647)
Q Consensus 314 ~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~---~~~~~ 390 (647)
.|++|+.....+. .| .+++.+. ...|+++||.+|+||+++.. ++..+.+++..+... ....+
T Consensus 324 ~~~~p~~~~~~~~--~~------~~~~~~~-~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~~~~~~~~ 388 (564)
T PRK12845 324 AWWFPAVAPLPGG--AP------AVMLAER-SLPGSLIVDQTGRRFVNEAT------DYMSFGQRVLERERAGDPVESMW 388 (564)
T ss_pred ceEecccccCCCC--Cc------ccchhhh-ccCceEEECCCCCEecCCCC------chhHHHHHHHhhhccCCCCceEE
Confidence 9999975532110 01 1222221 12578999999999998642 333344444432111 01123
Q ss_pred EEEeCCCCC---------------hhHHH----hhChhHHHHHHHc--------------------CCCCC---------
Q 006397 391 VLLDISHKP---------------TEKIL----SHFPNIAAECLKY--------------------GLDIT--------- 422 (647)
Q Consensus 391 v~lD~~~~~---------------~~~~~----~~~~~~~~~~~~~--------------------G~d~~--------- 422 (647)
+.+|..... .+.+. .+..++.+++++. |.|++
T Consensus 389 ~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr~~~~~~ 468 (564)
T PRK12845 389 IVFDQQYRNSYVFAAELFPRMPIPQAWYDAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAAAGVDSDFGRGRSAYD 468 (564)
T ss_pred EEECchhhhhcccccccCCCCcccHhHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCchhh
Confidence 444432100 00000 0122333333333 33321
Q ss_pred ------------------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccC-chhh
Q 006397 423 ------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSL 474 (647)
Q Consensus 423 ------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~-g~sl 474 (647)
+.| +++.|..++|+||++||+++| ++||||||||+++ +|++|.+|++ |+++
T Consensus 469 ~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~id~~~qVLd~dg~pI~GLYAaG~~~-gg~~g~~Y~g~G~~l 547 (564)
T PRK12845 469 RYYGDPTVTPNPNLRPLDKGPFYAVKMVLSDLGTCGGLRADERARVLREDGSVIDGLYAIGNTA-ANAFGATYPGAGATI 547 (564)
T ss_pred hhcCCCcCCCCcccCccccCCEEEEEeccccceecCCeeECCCceEECCCCCCCCCeeEeeeec-cccccCCCCCcchhh
Confidence 122 577788899999999999988 4899999999998 7999999997 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006397 475 LEALVFARRAVQPSID 490 (647)
Q Consensus 475 ~~a~v~G~~Ag~~a~~ 490 (647)
+.|++|||+||++|++
T Consensus 548 g~a~~fGriAg~~aa~ 563 (564)
T PRK12845 548 GQGLVYGYIAAQDAAA 563 (564)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999864
No 46
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-41 Score=373.37 Aligned_cols=383 Identities=22% Similarity=0.291 Sum_probs=263.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHh---c
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVA---G 154 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~---g 154 (647)
+.++||||||+|.+|++||+.|++.| +|+||||....+|++.+++|++.... +..++.+.++.+.... .
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 83 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQ 83 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhccc
Confidence 45799999999999999999999999 99999999888888888887765432 1235555543333222 2
Q ss_pred CCCCCHHHHHHHHHhhHHHHHHHHHcCCccccCCC-CcccccccCCccccceeecC------------------------
Q 006397 155 AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGED-GNLHLAREGGHSHHRIVHAA------------------------ 209 (647)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~-g~~~~~~~gg~~~~r~~~~~------------------------ 209 (647)
....++++++.+++.+++.++||+++|++|...+. ..++....+++...|.+++.
T Consensus 84 ~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (557)
T PRK12844 84 GPASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGT 163 (557)
T ss_pred ccCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCcccccccc
Confidence 22377889999999999999999999999964321 01111122222222221110
Q ss_pred ----------------------------------------CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006397 210 ----------------------------------------DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 249 (647)
Q Consensus 210 ----------------------------------------~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 249 (647)
...|..+...|.+.+++. |++++.++.|++|+.+ ++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~-gv~i~~~~~v~~Li~~-~g-- 239 (557)
T PRK12844 164 VVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAA-GVPLWTNTPLTELIVE-DG-- 239 (557)
T ss_pred cccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEe-CC--
Confidence 113667888888888874 9999999999999987 56
Q ss_pred ceEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------CCC-------CCCCCCCcchhHHHHHHcCCeeccccccc
Q 006397 250 AVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------YPS-------TTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 250 ~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------~~~-------~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q 315 (647)
+|+||++.. +|+...|.| +.|||||||++.. |.. +.+++.++|||+.|++++||.+.+|++.|
T Consensus 240 -~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~~ 316 (557)
T PRK12844 240 -RVVGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAW 316 (557)
T ss_pred -EEEEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCcccccccc
Confidence 899998864 566778999 5899999999972 321 34467799999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeC
Q 006397 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDI 395 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~ 395 (647)
++|+.+...+.+. ..+........++++||.+|+||+++.. ++..+..++..+. +...++.+|.
T Consensus 317 ~~p~~~~~~~~~~--------~~~~~~~~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~--~~~~~~I~D~ 380 (557)
T PRK12844 317 WVPGAPLPNGGPR--------PYMHNSERSKPGSIIVDRAGRRFVNEAG------SYMEVGRAMYAQD--AVPAWMIMDS 380 (557)
T ss_pred ccCccccCCCCcc--------cccccccccCCcEEEECCCCCccccCCC------cHHHHHHHHHhCC--CceEEEEECc
Confidence 9997664322110 0111122234678999999999998643 3333444443321 1112233342
Q ss_pred CCCC------------hhHHH-----hhChhHHHHHHHc--------------------CCCCC----------------
Q 006397 396 SHKP------------TEKIL-----SHFPNIAAECLKY--------------------GLDIT---------------- 422 (647)
Q Consensus 396 ~~~~------------~~~~~-----~~~~~~~~~~~~~--------------------G~d~~---------------- 422 (647)
.... .+... .+..++.+++++. |.|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~~G~D~dFgr~~~~~~~~~~~~~ 460 (557)
T PRK12844 381 RYRKRYLFGTIPPGPTPQEWLDSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAATGTDPDFHRGESAYDRYYGDPT 460 (557)
T ss_pred hHHhhcCccccCCccChHHHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccCCCcchhhccccCCc
Confidence 1100 00000 0112222222222 32321
Q ss_pred -----------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccC-chhhHHHHHHH
Q 006397 423 -----------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNSLLEALVFA 481 (647)
Q Consensus 423 -----------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~-g~sl~~a~v~G 481 (647)
+.| +++.|..++|+||++||+++| .+||||||||+++ +|++|.+|++ |+++++|++||
T Consensus 461 ~~~~~~l~pi~~~PfYA~~~~~~~~~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~G 539 (557)
T PRK12844 461 NKPNPSLGPLDKPPFYAVRMVPGDVGTSGGLLTDEHARVLREDGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFG 539 (557)
T ss_pred CCCCcccCcCCCCCeEEEEEeccccEECCCccCCCCceEECCCCCCccceeeccccc-cccccCCCCcCccchHHHHHHH
Confidence 123 567788899999999999998 4899999999997 7999999998 89999999999
Q ss_pred HHHHHHHHHhh
Q 006397 482 RRAVQPSIDHK 492 (647)
Q Consensus 482 ~~Ag~~a~~~~ 492 (647)
|+||++|+++.
T Consensus 540 riAg~~aa~~~ 550 (557)
T PRK12844 540 YIAALHAAGAR 550 (557)
T ss_pred HHHHHHHHhcc
Confidence 99999998865
No 47
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=6e-40 Score=365.22 Aligned_cols=387 Identities=18% Similarity=0.211 Sum_probs=263.0
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
++.++||||||+|+||++||+.|++.| +|+||||....+|+|.+++|++.... +..++++.++.++...+.+
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~~~ 87 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQITGG 87 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHhcc
Confidence 456799999999999999999999999 99999999988898999998886543 2368899999888888888
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHcC--CccccCCCC-cccccccCCccccceee--------------------------
Q 006397 157 LCDDETVRVVCTEGPDRIRELIAIG--ASFDRGEDG-NLHLAREGGHSHHRIVH-------------------------- 207 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~G--~~~~~~~~g-~~~~~~~gg~~~~r~~~-------------------------- 207 (647)
..++++++.+++++++.++||++.+ +.|.....- .+.....+.....+...
T Consensus 88 ~~d~~~v~~~~~~s~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 167 (584)
T PRK12835 88 LVSAARLRAYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAPKG 167 (584)
T ss_pred cCCHHHHHHHHHHhHHHHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhccccccccccc
Confidence 8999999999999999999999875 333221100 00000000000000000
Q ss_pred ---------------------------------------cCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006397 208 ---------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 208 ---------------------------------------~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
.....|..+...|.+.+++ .|++|++++.+++|+.+++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~gv~i~~~~~~~~Li~d~~g- 245 (584)
T PRK12835 168 IWFTPKDLRLFYMVRQTWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKD-AGVPLWLDSPMTELITDPDG- 245 (584)
T ss_pred ccccHHHHHHHHhhccCcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHh-CCceEEeCCEEEEEEECCCC-
Confidence 0001244566667777766 59999999999999997667
Q ss_pred CceEEEEEEEecCCCeEEEEEcC-eEEECCCccccc-------CC------CCCCCCCCcchhHHHHHHcCCeecccccc
Q 006397 249 DAVCHGVDTLNVETQEVVRFISK-VTLLASGGAGHI-------YP------STTNPLVATGDGMAMAHRAQAVISNMEFV 314 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~~-------~~------~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~ 314 (647)
+|+||++.. +++...|.|+ .||||||||++. .+ .+.++..++|||+.|++++||.+.+|+..
T Consensus 246 --~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~~ 321 (584)
T PRK12835 246 --AVVGAVVER--EGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDEA 321 (584)
T ss_pred --cEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCccc
Confidence 899998853 5666789996 799999999962 12 23456779999999999999999999887
Q ss_pred cccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhc--C-CceE
Q 006397 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR--N-EKYV 391 (647)
Q Consensus 315 q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~--~-~~~v 391 (647)
+++|......+.. .+.+.+... .++++||.+|+||+++..+ +..+..++......+ . ..++
T Consensus 322 ~~~~~~~~~~~~~---------~~~~~~~~~-~~~i~VN~~G~RF~nE~~~------~~~~~~~~~~~~~~~~~~~~~~~ 385 (584)
T PRK12835 322 WWFPAICWPDGRM---------QFMLNERMM-PAQFIVNGAGKRFINEAAP------YMDFVHAMIAGQRSGVGHIPCWL 385 (584)
T ss_pred eecceeecCCCce---------eeeeeccCC-CceEEECCCCCcCcCCcCc------hhhHHHHHHhhccCCCCCcceEE
Confidence 7766543221100 111222111 3579999999999986432 222333332211100 0 1223
Q ss_pred EEeCCCC-------------------------ChhHHH----hhChhHHHHHHHc--------------------CCCCC
Q 006397 392 LLDISHK-------------------------PTEKIL----SHFPNIAAECLKY--------------------GLDIT 422 (647)
Q Consensus 392 ~lD~~~~-------------------------~~~~~~----~~~~~~~~~~~~~--------------------G~d~~ 422 (647)
.+|.... +.+.+. .+..++.+++++. |.|++
T Consensus 386 I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~~G~D~d 465 (584)
T PRK12835 386 VTDIRSFSRYVFGGHLPIPKIPFAPVPTGRKFPQAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLARKGHDDD 465 (584)
T ss_pred EEChHHHhhcCcccccCCCccccccccccccCcHHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcCcc
Confidence 3342110 000000 0112222222222 22211
Q ss_pred --------------------------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCC
Q 006397 423 --------------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGAN 467 (647)
Q Consensus 423 --------------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~ 467 (647)
+.| +++.|..+.|+||++||+++| ++|||||||||++ +|++|.+
T Consensus 466 Fgr~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~-Gg~~g~~ 544 (584)
T PRK12835 466 FNRGDSAYDNYYGDPTLPNPNLDPLGKPPYYAFRIELGDLGTSGGLRTDEHARVLREDDSVIPGLYAVGNTS-ASVMGRS 544 (584)
T ss_pred cCCCCcchhcccCCCCCCCccccccccCCeEEEEecccccccCcCccCCCCceEECCCCCCccceeeeeecc-cccccCC
Confidence 122 566788899999999999998 5899999999998 7999999
Q ss_pred ccC-chhhHHHHHHHHHHHHHHHHhhhc
Q 006397 468 RLA-SNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 468 rl~-g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
|++ |+++++|++|||+||++|++.++.
T Consensus 545 Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 545 YAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred CCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 987 788999999999999999987644
No 48
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=3.9e-39 Score=358.41 Aligned_cols=384 Identities=21% Similarity=0.281 Sum_probs=257.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCCeeeecCC-------CCCHHHHHHHHHHhcCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGAY 156 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~--~~~g~s~~a~Ggi~~~~~~-------~d~~~~~~~~~~~~g~~ 156 (647)
.++||||||+|.|||+||+.|++.| +|+||||.+ ..+|++.+++|++...... .|+++.++.+++..+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 5699999999999999999999999 999999999 6778888888888765432 68999999999988877
Q ss_pred CCCHH-----HHHHHHHh-hHHHHHHHHHcCCccccCC----CCcccccccC--CccccceeecCCCcHHHHHHHHHHHH
Q 006397 157 LCDDE-----TVRVVCTE-GPDRIRELIAIGASFDRGE----DGNLHLAREG--GHSHHRIVHAADMTGREIERALLEAV 224 (647)
Q Consensus 157 ~~~~~-----~~~~~~~~-~~~~~~~l~~~G~~~~~~~----~g~~~~~~~g--g~~~~r~~~~~~~~g~~~~~~L~~~~ 224 (647)
..++. ++..+++. +++.++||+++|++|.... ++.. ..+ ++..+| .+..+.+|..+...|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~~~~~~r-~~~~~~~G~~~~~~l~~~~ 158 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGHGNSVPR-FHITWGTGPGVVEPFERRV 158 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCcccccCc-eecCCCCcHHHHHHHHHHH
Confidence 66654 35667775 7999999999999996532 1211 112 224445 3444456777888887776
Q ss_pred H---cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCC-------------CeEEEEEcCeEEECCCccccc-----
Q 006397 225 V---SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVET-------------QEVVRFISKVTLLASGGAGHI----- 283 (647)
Q Consensus 225 ~---~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~-------------G~~~~i~A~~VVlAtGg~~~~----- 283 (647)
+ +..+|+|++++++++|+.+ +| +|+||++.+..+ ++...|.||.|||||||++.+
T Consensus 159 ~~~~~~~gv~i~~~t~~~~Li~~-~g---~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~em~~ 234 (549)
T PRK12834 159 REAAARGLVRFRFRHRVDELVVT-DG---AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNHELVR 234 (549)
T ss_pred HHHHHhCCceEEecCEeeEEEEe-CC---EEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCHHHHH
Confidence 4 2346999999999999986 57 899998743211 234678999999999999975
Q ss_pred --CCC----------CCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEE
Q 006397 284 --YPS----------TTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 351 (647)
Q Consensus 284 --~~~----------~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~ 351 (647)
++. +.++..++|||+.||+++||.+.+|+.++.+|..+...+ +..+.. ... .....++++
T Consensus 235 ~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~-~~~~~~----~~~---~~~~~~~i~ 306 (549)
T PRK12834 235 RNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWD-PIWPNH----GIR---ILPGPSSLW 306 (549)
T ss_pred HhCccccCCCccccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCC-CcCccc----cce---eccCCCEEE
Confidence 231 345556899999999999999999998876654432211 000100 010 112345799
Q ss_pred EeCCCCcccccccc-ccccC--------c----hhHHHHHHHHH-----------------------------------H
Q 006397 352 YNLGMERFMPLYDE-RAELA--------P----RDVVARSIDDQ-----------------------------------L 383 (647)
Q Consensus 352 vn~~G~rf~~~y~~-~~~l~--------~----rd~~~~~i~~~-----------------------------------~ 383 (647)
||.+|+||+++..+ ..... + .-+.-..+.+. .
T Consensus 307 Vn~~GkRF~nE~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (549)
T PRK12834 307 FDATGNRLPAPLFPGFDTLGTLKHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGAPGPVEAF 386 (549)
T ss_pred ECCCCCCCCCCccccccHHHHHHHHhccCCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCCCccHHHH
Confidence 99999999987421 00000 0 00000000000 0
Q ss_pred HhcCCceEEEeCCCCChhHHHhhCh-----------hHHHHHHH--------cCCCC-----------------------
Q 006397 384 KKRNEKYVLLDISHKPTEKILSHFP-----------NIAAECLK--------YGLDI----------------------- 421 (647)
Q Consensus 384 ~~~~~~~v~lD~~~~~~~~~~~~~~-----------~~~~~~~~--------~G~d~----------------------- 421 (647)
.+. +..++.. -+.++|.+++. .+....+. +|.|+
T Consensus 387 ~~~--g~~~~kA--dTleELA~k~g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~~~~ 462 (549)
T PRK12834 387 KDH--GEDFVVA--DDLEELVAGMNALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPH 462 (549)
T ss_pred Hhc--CCcEEEe--CCHHHHHHHhcccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhcccCCc
Confidence 000 0000100 01222222110 01111110 12221
Q ss_pred -----CCCc---EEEeeeeceecceeEeCCCCc------ccccCccccccccc---CCCCCCCccCchhhHHHHHHHHHH
Q 006397 422 -----TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVAC---TGLHGANRLASNSLLEALVFARRA 484 (647)
Q Consensus 422 -----~~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~---gG~~Ga~rl~g~sl~~a~v~G~~A 484 (647)
.+.| +++.|..+.|+||++||+++| ++|||||||||+++ +|++|.++++|+++++|++|||+|
T Consensus 463 ~~~~~~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriA 542 (549)
T PRK12834 463 RLLDPAAGPLIAVRLHILTRKTLGGLETDLDSRVLGADGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAA 542 (549)
T ss_pred cccCCCCCCEEEEEEeccccEEccCEeECCCCceeCCCCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHH
Confidence 2344 677888999999999999998 48999999999983 378898999999999999999999
Q ss_pred HHHHHH
Q 006397 485 VQPSID 490 (647)
Q Consensus 485 g~~a~~ 490 (647)
|++|++
T Consensus 543 g~~aa~ 548 (549)
T PRK12834 543 GRAAAR 548 (549)
T ss_pred HHHHhh
Confidence 999875
No 49
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=100.00 E-value=3.2e-38 Score=342.42 Aligned_cols=372 Identities=20% Similarity=0.207 Sum_probs=254.1
Q ss_pred EECCcHHHHHHHHHHHhcC-CeEEEEecCC--CCCccccccCCeeee-------cCCCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEP--HESNTNYAQGGVSAV-------LCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 93 IIGgG~AGl~aA~~la~~G-~V~vlEk~~~--~~g~s~~a~Ggi~~~-------~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
|||+|+||++||+.|+++| +|+||||.+. .+|++... +++... ....++++.++.+++..+.+.+++++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHG-RNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccc-cchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 7999999999999999999 9999999875 24444332 222111 11235677888999988888999999
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
++.+++++.+.++|++++|++|....++.... ..+..+. ...+..+...|.+.+++. |++|+++++|++|+
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~-------~~~~~~~-~~~g~~l~~~L~~~a~~~-Gv~i~~~~~v~~l~ 150 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPY-------SRRTAFL-RGGGKALTNALYSSAERL-GVEIRYGIAVDRIP 150 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccc-------cCceeee-cCCHHHHHHHHHHHHHHc-CCEEEeCCEEEEEE
Confidence 99999999999999999999987543332110 0111122 134678899999999874 99999999999999
Q ss_pred ecC-CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc-------CCC------CCCCCCCcchhHHHHHHcCCee
Q 006397 243 TTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI-------YPS------TTNPLVATGDGMAMAHRAQAVI 308 (647)
Q Consensus 243 ~~~-~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~-------~~~------~~~~~~~~Gdg~~~a~~aGa~l 308 (647)
.++ ++ +|+||...+ ++ ..|.|+.||+||||++.. ++. ..+.+.++|||+.|++++||.+
T Consensus 151 ~~~~~g---~v~gv~~~~--~~--~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~Ga~~ 223 (432)
T TIGR02485 151 PEAFDG---AHDGPLTTV--GT--HRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEGAQA 223 (432)
T ss_pred ecCCCC---eEEEEEEcC--Cc--EEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcCccc
Confidence 863 45 788887631 22 478999999999999863 111 2244578999999999999998
Q ss_pred cccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCC
Q 006397 309 SNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 388 (647)
Q Consensus 309 ~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~ 388 (647)
.++. .++|+.... +.. |.. ............++++||.+|+||+++..+... ..+......+..+ .+..
T Consensus 224 ~~~~-~~~~~~~~~-~~~---~~~---~~~~~~~~~~~~~~i~vn~~G~RF~~E~~~~~~-~~~~~~~~~~~~~--~~~~ 292 (432)
T TIGR02485 224 IGDP-TDGHVVAVD-ARA---PFH---DGGIVTRIDGMQLGIVVGRDGRRFADEGAIRGP-ERYAVWGRQLASR--PGQR 292 (432)
T ss_pred cCCC-CcceeEeec-CCC---CcC---CCceeeeecccccEEEECCCCCEeeecCCcccc-chHHHHHHHHHhC--CCCe
Confidence 7665 345554332 110 100 011122222335679999999999986432100 0111222222211 1112
Q ss_pred ceEEEeCCCCCh---hH-HHhhChhHHHHHHHcCCCCC---------------------CCc---EEEeeeeceecceeE
Q 006397 389 KYVLLDISHKPT---EK-ILSHFPNIAAECLKYGLDIT---------------------SQP---IPVVPAAHYMCGGVR 440 (647)
Q Consensus 389 ~~v~lD~~~~~~---~~-~~~~~~~~~~~~~~~G~d~~---------------------~~~---i~v~p~~~~~~GGi~ 440 (647)
.++++|....+. .. ...+..++.+++++.|+|+. +.| +++.|..|+|+||++
T Consensus 293 ~~~i~D~~~~~~~~~~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~~g~~~i~~~PfYa~~~~p~~~~T~GGl~ 372 (432)
T TIGR02485 293 AYILLDADAAKRLPPMACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPRTGARMILVVPFHAYPMIPGITFTRYGLV 372 (432)
T ss_pred EEEEecchhhhhcccccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeecccceeccceE
Confidence 346667543210 00 00122345555555555532 334 788999999999999
Q ss_pred eCCCCcc------cccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 441 AGLQGET------NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 441 vD~~~~T------~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
||+++|+ +|||||||||++++++||.+|++|+++++|++|||+||++|++++
T Consensus 373 id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 373 VDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred ECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 9999983 899999999997668999999999999999999999999998764
No 50
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=4.4e-38 Score=349.03 Aligned_cols=387 Identities=21% Similarity=0.213 Sum_probs=255.1
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
.+.++||+|||+|++|++||+.|++.| +|+||||....+|.+.++.|+++... +..++.+..+.++......
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 84 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGE 84 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCC
Confidence 456799999999999999999999999 99999999888888888777765432 2246777777777777778
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHH-cCCccccCCCC-cccccccCCcccccee----------------------------
Q 006397 157 LCDDETVRVVCTEGPDRIRELIA-IGASFDRGEDG-NLHLAREGGHSHHRIV---------------------------- 206 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~~~g-~~~~~~~gg~~~~r~~---------------------------- 206 (647)
.+++++++.+++.+++.++||++ .+++|.....- .++....++....|.+
T Consensus 85 ~~~~~~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 164 (572)
T PRK12839 85 NYDADKVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFL 164 (572)
T ss_pred CCCHHHHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCccccccc
Confidence 89999999999999999999998 56666311000 0000000000000000
Q ss_pred ---------------------------------------ecC---CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 207 ---------------------------------------HAA---DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 207 ---------------------------------------~~~---~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
+.. ...|..++..|.+.+++. |++|+.++.|++|+.+
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~-Gv~i~~~t~v~~Li~~ 243 (572)
T PRK12839 165 GMGIMAGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADDL-GVDLRVSTSATSLTTD 243 (572)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEEC
Confidence 000 013667788888888874 9999999999999986
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc-------cCCCC--------CCCCCCcchhHHHHHHcCCeec
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH-------IYPST--------TNPLVATGDGMAMAHRAQAVIS 309 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~-------~~~~~--------~~~~~~~Gdg~~~a~~aGa~l~ 309 (647)
++| +|+||.+.+ .+++...+.++.|||||||+++ .++.. .+++.++|||+.|++++||.+.
T Consensus 244 ~~g---~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l~ 319 (572)
T PRK12839 244 KNG---RVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARLD 319 (572)
T ss_pred CCC---cEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCccc
Confidence 566 899998865 3565444556999999999997 45532 3567899999999999999998
Q ss_pred ccc--cccccceeccCCCCCCCCCCCCCccceeeeccc-CCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhc
Q 006397 310 NME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVR-GDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 386 (647)
Q Consensus 310 ~~e--f~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~-~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~ 386 (647)
++. ..+++|..+..... +. . ..+.....+ ..+.++||.+|+||+++.. ++..+..++..+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~---~~---~-~~~~~~~~~~~~g~i~VN~~GkRF~nE~~------~~~~~~~~~~~~~~~~ 386 (572)
T PRK12839 320 RDLASPAAWCPVSLVPYRN---GK---V-GTFPHIMDRGKPGSIGVLATGKRFVNEAN------GYYDYTLAMVKAAPEG 386 (572)
T ss_pred cCCcccccccceecccCCC---Cc---c-ccccccccccCCceEEECCCCCcCCCCCC------ccccHHHHHHHhccCC
Confidence 743 33455543321100 00 0 000000011 2467999999999998642 2222334443322111
Q ss_pred C--CceEEEeCCCC-------------ChhH-HH----hhChhHHHHHHHc--------------------CCCCC----
Q 006397 387 N--EKYVLLDISHK-------------PTEK-IL----SHFPNIAAECLKY--------------------GLDIT---- 422 (647)
Q Consensus 387 ~--~~~v~lD~~~~-------------~~~~-~~----~~~~~~~~~~~~~--------------------G~d~~---- 422 (647)
. ..++.+|.... +.+. +. .+..++.+++++. |.|++
T Consensus 387 ~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~~G~D~dFgr~ 466 (572)
T PRK12839 387 EPVCSWLIADSRFVRKYPLGMAKPLPVPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENARDGEDPEFGRG 466 (572)
T ss_pred CCccEEEEeChHHHhhccccccCCCCCccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcCcCCC
Confidence 0 12333443200 0000 00 0112222222222 33221
Q ss_pred -----------------------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCc-c
Q 006397 423 -----------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR-L 469 (647)
Q Consensus 423 -----------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~r-l 469 (647)
+.| +++.|..++|+||++||+++| ++||||||||+++ +|++|.++ +
T Consensus 467 ~~~~~~~~gd~~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~pIpGLYAAG~~~-gg~~g~~Y~~ 545 (572)
T PRK12839 467 TTPFNRGSGDPDNGPNPSLAPLEKGPFYAVKVVPGSFGTFAGLVADGKSRVLRDDDTPIDGLYAAGNDQ-ASVMGGHYPS 545 (572)
T ss_pred cchhhcccCCcccCCCcccccCCCCCeEEEEEeccccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCCC
Confidence 123 577788999999999999998 5899999999998 78888765 6
Q ss_pred CchhhHHHHHHHHHHHHHHHH
Q 006397 470 ASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 470 ~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
+|++++.|++|||+||++|++
T Consensus 546 ~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 546 GGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred cccchhHHHHHHHHHHHHHHh
Confidence 799999999999999999876
No 51
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-37 Score=345.29 Aligned_cols=381 Identities=23% Similarity=0.306 Sum_probs=253.6
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAY 156 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~ 156 (647)
++.++||||||+|++|++||+.|++.| +|+||||....+|++..+.|++.... +..++.+....+.......
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVGD 83 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 455799999999999999999999999 99999999888888888777765432 2234555555555555555
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHHc-CCccccCCC-CcccccccCCccccceee---------------------------
Q 006397 157 LCDDETVRVVCTEGPDRIRELIAI-GASFDRGED-GNLHLAREGGHSHHRIVH--------------------------- 207 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~-G~~~~~~~~-g~~~~~~~gg~~~~r~~~--------------------------- 207 (647)
..++..++.+.+...+.++|+.+. +..+..... +.+.....++....+.+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~ 163 (557)
T PRK07843 84 VVPPERIDAYLDRGPEMLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLNM 163 (557)
T ss_pred hcCHHhhhhHHhcChHHHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhccccccccccc
Confidence 677888888888888889998764 433321110 000000000000000000
Q ss_pred --------------------------------------cCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCC
Q 006397 208 --------------------------------------AADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPD 249 (647)
Q Consensus 208 --------------------------------------~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~ 249 (647)
.....+..+...|.+.+++ .|+++++++.|++|+.+ ++
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~-~gv~v~~~t~v~~l~~~-~g-- 239 (557)
T PRK07843 164 VVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQR-AGVPVLLNTPLTDLYVE-DG-- 239 (557)
T ss_pred cccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHc-CCCEEEeCCEEEEEEEe-CC--
Confidence 0001244566777777776 49999999999999986 56
Q ss_pred ceEEEEEEEecCCCeEEEEEcC-eEEECCCcccc------cCC-------CCCCCCCCcchhHHHHHHcCCeeccccccc
Q 006397 250 AVCHGVDTLNVETQEVVRFISK-VTLLASGGAGH------IYP-------STTNPLVATGDGMAMAHRAQAVISNMEFVQ 315 (647)
Q Consensus 250 ~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~------~~~-------~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q 315 (647)
+|+||++.. +++...|.|+ .|||||||+.. .|. .+.++..++|||+.|++++||.+.+|++.|
T Consensus 240 -~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~ 316 (557)
T PRK07843 240 -RVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAW 316 (557)
T ss_pred -EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhc
Confidence 899998853 4666789996 79999999987 232 245667899999999999999999999999
Q ss_pred ccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHH----HHHh-cC--C
Q 006397 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD----QLKK-RN--E 388 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~----~~~~-~~--~ 388 (647)
++|+.....+ + .+.+.+. ...++++||.+|+||++++. +++....++.. +... +. .
T Consensus 317 ~~p~~~~~~~----~------~~~~~~~-~~~g~i~VN~~G~RF~nE~~------~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (557)
T PRK07843 317 WGPTIPLPGG----P------WFALSER-NLPGSIIVNMSGKRFMNESA------PYVEAVHHMYGGEYGQGPGPGENIP 379 (557)
T ss_pred cCCccccCCC----c------chhhhhh-ccCCeEEECCCCCcccCCCC------cHHHHHHHHHhhccccccCCCCCce
Confidence 9987542111 1 1222221 12578999999999998643 34444444441 1100 00 1
Q ss_pred ceEEEeCCCC--------------ChhHHH----hhChhHHHHHHHcC--------------------CCCC--------
Q 006397 389 KYVLLDISHK--------------PTEKIL----SHFPNIAAECLKYG--------------------LDIT-------- 422 (647)
Q Consensus 389 ~~v~lD~~~~--------------~~~~~~----~~~~~~~~~~~~~G--------------------~d~~-------- 422 (647)
.++.+|.... +.+.+. .+..++.+++.+.| .|++
T Consensus 380 ~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~~G~D~~Fgr~~~~~ 459 (557)
T PRK07843 380 AWLVFDQRYRDRYLFAGLQPRQPIPSRWLESGVIVKADTLAELAAKIGVPADALTATVQRFNGFARSGVDEDFHRGESAY 459 (557)
T ss_pred EEEEECchHHhhcCcCcCCCCCCCcHHHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCcccCCCCccc
Confidence 2334443210 000000 01223333333333 2221
Q ss_pred -------------------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccC-chh
Q 006397 423 -------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-SNS 473 (647)
Q Consensus 423 -------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~-g~s 473 (647)
+.| +++.|..++|+||++||+++| .+|||||||||++ +|++|.+|++ |++
T Consensus 460 ~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~ 538 (557)
T PRK07843 460 DRYYGDPTNKPNPNLGELSHAPFYAAKMVPGDLGTKGGLRTDVRGRVLRDDGSVIEGLYAAGNVS-APVMGHTYAGPGAT 538 (557)
T ss_pred ccccCCCCCCCCcccccccCCCeEEEEEecccceeCCCceECCCceEECCCCCCcCCceeccccc-cccccCCcCccccc
Confidence 122 577788899999999999998 4899999999998 7999999997 889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 006397 474 LLEALVFARRAVQPSID 490 (647)
Q Consensus 474 l~~a~v~G~~Ag~~a~~ 490 (647)
+++|++|||+||++|++
T Consensus 539 ~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 539 IGPAMTFGYLAALDIAA 555 (557)
T ss_pred hhhHHHHHHHHHHHHhh
Confidence 99999999999999875
No 52
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1e-36 Score=340.08 Aligned_cols=390 Identities=21% Similarity=0.208 Sum_probs=258.8
Q ss_pred CccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcC
Q 006397 84 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 155 (647)
Q Consensus 84 ~~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~ 155 (647)
.++.++||||||+|++|++||+.|+++| +|+||||....+|++..+.|++.... +..|+++.++.++.....
T Consensus 12 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~~~~ 91 (578)
T PRK12843 12 RWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDALVG 91 (578)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHHhhC
Confidence 3556799999999999999999999999 99999999988888888888776432 235788887777666555
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHH-cCCccccC---CC-----------Cccc-----------------------cccc
Q 006397 156 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRG---ED-----------GNLH-----------------------LARE 197 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~---~~-----------g~~~-----------------------~~~~ 197 (647)
...++++++.+++++.+.++||++ .|+.|... ++ +... ....
T Consensus 92 ~~~d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (578)
T PRK12843 92 DRSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEFTVL 171 (578)
T ss_pred CCCcHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhcccccccccc
Confidence 667999999999999999999996 78887421 11 0000 0001
Q ss_pred CCccccce------------------------------eec-CC--CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 198 GGHSHHRI------------------------------VHA-AD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 198 gg~~~~r~------------------------------~~~-~~--~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
+++...+. .+. .. ..|..+...|.+.+++. |++++.++.|++|+.+
T Consensus 172 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~-Gv~i~~~t~v~~Li~~ 250 (578)
T PRK12843 172 GGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRAR-GVRILTQTDVESLETD 250 (578)
T ss_pred ccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhC-CCEEEeCCEEEEEEee
Confidence 11111110 000 00 13667888899999874 9999999999999986
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEc-CeEEECCCccccc------------CCCCCCCCCCcchhHHHHHHcCCeeccc
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGHI------------YPSTTNPLVATGDGMAMAHRAQAVISNM 311 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------------~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ 311 (647)
++ +|+||.+.+ +|+...|.| +.|||||||++.. +..++++..++|||+.|++++||.+.++
T Consensus 251 -~g---~V~GV~~~~--~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~~ 324 (578)
T PRK12843 251 -HG---RVIGATVVQ--GGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGRG 324 (578)
T ss_pred -CC---EEEEEEEec--CCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCcccc
Confidence 56 899998753 566667887 7999999999984 3345677889999999999999999775
Q ss_pred cccc--ccceeccCCCCCCCCCCCCCccceeeecccC-CCcEEEeCCCCccccccccccccCchhHHHHHHHHHHH-hc-
Q 006397 312 EFVQ--FHPTALADEGLPIKPKKTRENSFLITEAVRG-DGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLK-KR- 386 (647)
Q Consensus 312 ef~q--~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~-~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~-~~- 386 (647)
...+ +.|....... ......+......++ .++++||.+|+||+++. ..++.+..++..... ..
T Consensus 325 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~I~VN~~GkRF~nE~------~~~~~~~~~~~~~~~~~~~ 392 (578)
T PRK12843 325 LLSNAFWAPVSVRRRA------DGSTAVFPHFYLDRGKPGTIAVNQQGRRFVNES------TSYHLFGTAMFAAGKTSPG 392 (578)
T ss_pred CcccceecccccccCC------CCccccccchhhhccCCCeEEECCCCCccccCC------ccHHHHHHHHHhhccCCCC
Confidence 3211 2232211100 000000000000122 46799999999999853 334444444433211 00
Q ss_pred CCceEEEeCCCCC-------------hhHH-----HhhChhHHHHHHHc--------------------CCCCC------
Q 006397 387 NEKYVLLDISHKP-------------TEKI-----LSHFPNIAAECLKY--------------------GLDIT------ 422 (647)
Q Consensus 387 ~~~~v~lD~~~~~-------------~~~~-----~~~~~~~~~~~~~~--------------------G~d~~------ 422 (647)
...++.+|..... .+.. ..+..++.+++.+. |.|++
T Consensus 393 ~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~~G~D~dFgr~~~ 472 (578)
T PRK12843 393 IPAYLITDAEFLRKYGLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYARTGIDPDFGRGAT 472 (578)
T ss_pred ccEEEEEChHHHhhcCcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 1122333322100 0000 00112222222222 33321
Q ss_pred ---------------------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccC-c
Q 006397 423 ---------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA-S 471 (647)
Q Consensus 423 ---------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~-g 471 (647)
+.| +++.|..++|+||++||+++| ++||||||||+++ +|++|.++++ |
T Consensus 473 ~~~~~~~~~~~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVld~dg~pIpGLYAaG~~~-gg~~g~~y~~~G 551 (578)
T PRK12843 473 AYQRMNGDAMIGPNPNLGPIETAPFYAVRLYPGDIGAATGLVTDASARVLNADGQPISGLYACGNDM-ASIMGGTYPGPG 551 (578)
T ss_pred hhhcccCCcccCCCCcccccCCCCeEEEEecCCccccCCCccCCCCceEECCCCCCcCCceeccccc-cccccCCCCCcc
Confidence 122 567788899999999999988 4899999999998 7999988875 7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh
Q 006397 472 NSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 472 ~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
+++++|++|||+||++|++++.
T Consensus 552 ~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 552 ITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred cchHHHHHHHHHHHHHHHHhhh
Confidence 8899999999999999998753
No 53
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-36 Score=339.22 Aligned_cols=388 Identities=20% Similarity=0.227 Sum_probs=250.5
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGAYL 157 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~~~ 157 (647)
+.++||||||+|++|++||+.|+++| +|+||||....+|++.++.|.+.... +..++++.++.+......+.
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~ 86 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGAF 86 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCCC
Confidence 45799999999999999999999999 99999999988888887766544321 23577777777666666677
Q ss_pred CCHHHHHHHHHhhHHHHHHHHH-cCCccccCCCCcccccccCCccccceee-----------------------------
Q 006397 158 CDDETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVH----------------------------- 207 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~~~g~~~~~~~gg~~~~r~~~----------------------------- 207 (647)
.++++++.+++++.+.++||++ .|+.|.......+.....++....+.++
T Consensus 87 ~~~~~~~~~~~~~~~~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~~ 166 (574)
T PRK12842 87 FDAAAVEAFLDNGPEMVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGMM 166 (574)
T ss_pred CCHHHHHHHHhccHHHHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCccccccccee
Confidence 8999999999999999999986 5888743210000000001000000000
Q ss_pred --------------------------------------cC---CCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006397 208 --------------------------------------AA---DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 208 --------------------------------------~~---~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
.. ...|..+...|.+.+++ .|++|+.++.|++|+.+ +
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~-~Gv~i~~~~~v~~l~~~-~ 244 (574)
T PRK12842 167 FNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD-LGIPILTGTPARELLTE-G 244 (574)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEee-C
Confidence 00 01355677788888877 49999999999999986 5
Q ss_pred CCCceEEEEEEEecCCCeEEEEEc-CeEEECCCccc-------ccCCC--------CCCCCCCcchhHHHHHHcCCeecc
Q 006397 247 GPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAG-------HIYPS--------TTNPLVATGDGMAMAHRAQAVISN 310 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~-------~~~~~--------~~~~~~~~Gdg~~~a~~aGa~l~~ 310 (647)
+ +|+||++.+ .++ ...+.+ +.||+|||+++ ..|+. ++++..++|||+.|++++||.+.+
T Consensus 245 g---~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~ 319 (574)
T PRK12842 245 G---RVVGARVID-AGG-ERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDI 319 (574)
T ss_pred C---EEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCccc
Confidence 6 899998875 233 346788 58999999999 34443 456778999999999999999864
Q ss_pred cc--cccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh--c
Q 006397 311 ME--FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK--R 386 (647)
Q Consensus 311 ~e--f~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~--~ 386 (647)
+. ...++|....... . .+.. .. ..+. .....+.++||.+|+||+++..+ ++.+..++...... +
T Consensus 320 ~~~~~~~~~~~~~~~~~-~-~~~~-~~-~~~~--~~~~~g~i~Vn~~G~RF~nE~~~------~~~~~~~~~~~~~~~~~ 387 (574)
T PRK12842 320 RFPDAAAWMPVSKVPLG-G-GRTG-VF-PHLL--DRYKPGVIGVLRNGKRFTNESNS------YHDVGAAMIRACEGQKE 387 (574)
T ss_pred CCcccccccccccccCC-C-Cccc-cc-cccc--cccCCceEEECCCCCCccCCCCc------HhHHHHHHHHhcccCCC
Confidence 31 1112222110000 0 0000 00 0000 01124679999999999986432 22233333221110 1
Q ss_pred CCceEEEeCCC----------------------------CChhHHHhhC-----------hhHHHHHHHcCCCC------
Q 006397 387 NEKYVLLDISH----------------------------KPTEKILSHF-----------PNIAAECLKYGLDI------ 421 (647)
Q Consensus 387 ~~~~v~lD~~~----------------------------~~~~~~~~~~-----------~~~~~~~~~~G~d~------ 421 (647)
...++.+|... -+.++|.+++ ..+.+.+ +.|.|+
T Consensus 388 ~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~-~~G~D~~Fgr~~ 466 (574)
T PRK12842 388 TAMWLICDRATLRKYGLGYAKPAPMPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGA-VKGIDPAFGRGS 466 (574)
T ss_pred ccEEEEEcHHHHhhcCcccCCCCCCChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCCcccCCCc
Confidence 11223333210 0111221111 1111111 123321
Q ss_pred ---------------------CCCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCccC-
Q 006397 422 ---------------------TSQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLA- 470 (647)
Q Consensus 422 ---------------------~~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~rl~- 470 (647)
.+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++.+
T Consensus 467 ~~~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y~~~ 545 (574)
T PRK12842 467 TSFNRYLGDPDHKPNPCVAPIGSGPFYAVKVIMGDLGTFDGLRTDVTGEVLDADGTPIAGLYAVGNDR-ASIMGGNYPGA 545 (574)
T ss_pred chhhhhcCCcccCCCcccccCCCCCEEEEEecccccccCCCcCCCCCceEECCCCCCcCCceeccccc-ccCccCCCCCC
Confidence 1223 577788899999999999998 5899999999998 7999999987
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhc
Q 006397 471 SNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 471 g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
|+++++|++|||+||++|++.+..
T Consensus 546 G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 546 GITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred cccHHHHHHHHHHHHHHHHhhhcc
Confidence 899999999999999999987644
No 54
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=331.25 Aligned_cols=388 Identities=21% Similarity=0.252 Sum_probs=252.3
Q ss_pred CccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec-------CCCCCHHHHHHHHHHhcC
Q 006397 84 GSVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-------CPSDSVESHMQDTIVAGA 155 (647)
Q Consensus 84 ~~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~-------~~~d~~~~~~~~~~~~g~ 155 (647)
.++.++||+|||+|++|+++|+.|++.| +|+||||....+|++..+.|.++... +..++.+..+.++.....
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELG 87 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhC
Confidence 3566899999999999999999999999 99999999877887777766554332 224566666666655556
Q ss_pred CCCCHHHHHHHHHhhHHHHHHHHH-cCCccccCCC-Ccccc----cccCCccc---------------------cce---
Q 006397 156 YLCDDETVRVVCTEGPDRIRELIA-IGASFDRGED-GNLHL----AREGGHSH---------------------HRI--- 205 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~~~~~-g~~~~----~~~gg~~~---------------------~r~--- 205 (647)
...++++++.+++++.+.++||++ .|++|..... ..+.. ...++... .+.
T Consensus 88 ~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (581)
T PRK06134 88 ARYDAARIDAFLEAGPHMVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFM 167 (581)
T ss_pred cCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhcccccccccc
Confidence 678999999999999999999987 4787742110 00000 00000000 000
Q ss_pred --------------------------------------ee-c--CCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 206 --------------------------------------VH-A--ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 206 --------------------------------------~~-~--~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.+ . ....|..++..|.+.+++. |++|+++++|++|+.+
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~-Gv~i~~~t~v~~l~~~ 246 (581)
T PRK06134 168 GMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDL-GVRIWESAPARELLRE 246 (581)
T ss_pred ccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEe
Confidence 00 0 0023566778888888875 9999999999999986
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEc-CeEEECCCcccc-------cCCC--------CCCCCCCcchhHHHHHHcCCee
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH-------IYPS--------TTNPLVATGDGMAMAHRAQAVI 308 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~-------~~~~--------~~~~~~~~Gdg~~~a~~aGa~l 308 (647)
++ +|+||.+.+ ++....|+| +.||+|||+++. +++. +.++..++|||+.|++++||.+
T Consensus 247 -~g---~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~ 320 (581)
T PRK06134 247 -DG---RVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVV 320 (581)
T ss_pred -CC---EEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCc
Confidence 56 899998864 244457899 999999999986 3442 3456789999999999999998
Q ss_pred cc-c-ccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHh-
Q 006397 309 SN-M-EFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK- 385 (647)
Q Consensus 309 ~~-~-ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~- 385 (647)
.. + .+.+++|+........ .. .....++. ....++++||.+|+||+++.. ++..+..++......
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g--~~--~~~~~~~~--~~~~g~i~VN~~G~RF~nE~~------~~~~~~~~~~~~~~~~ 388 (581)
T PRK06134 321 ATDLASPVAWAPVSLVPHADG--SV--GHFPHIIE--RGKPGLIGVLANGKRFVNEAD------SYHDYVAAMFAATPPG 388 (581)
T ss_pred cCCCCcccccccccccCCCCC--cc--cccccccc--cCCCCeEEECCCCCcccCCCc------chhhHHHHHHHhcCCC
Confidence 63 3 4567787654321000 00 00001111 112467999999999998642 222223333322111
Q ss_pred cC-CceEEEeCCC----------------------------CChhHHHhhC-----------hhHHHHHHHcCCCCC---
Q 006397 386 RN-EKYVLLDISH----------------------------KPTEKILSHF-----------PNIAAECLKYGLDIT--- 422 (647)
Q Consensus 386 ~~-~~~v~lD~~~----------------------------~~~~~~~~~~-----------~~~~~~~~~~G~d~~--- 422 (647)
.+ ..++.+|... -+.++|.+++ ..+.+.+ +.|.|++
T Consensus 389 ~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~-~~G~D~dFgr 467 (581)
T PRK06134 389 QPVRSWLICDHRFLRRYGLGHIRPAPLPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHA-RNGQDPDFGR 467 (581)
T ss_pred CCccEEEEECHHHHhhcCccccCCCCCChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCCcccCC
Confidence 11 1233334221 0111222211 1111111 1233221
Q ss_pred -------------------------CCc---EEEeeeeceecceeEeCCCCc------ccccCcccccccccCCCCCCCc
Q 006397 423 -------------------------SQP---IPVVPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANR 468 (647)
Q Consensus 423 -------------------------~~~---i~v~p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a~gG~~Ga~r 468 (647)
+.| +++.|..+.|+||++||+++| ++||||||||+++ +|++|.++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~~g~pIpGLYAaG~~~-gg~~g~~y 546 (581)
T PRK06134 468 GSTPYNRKQGDPAHGGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQAGQPIPGLYAAGNDM-ASVMGGFY 546 (581)
T ss_pred CCchhhcccCCcccCCCCcccCcCCCCCeEEEEeeccccccCCCccCCCCCceECCCCCCcCcceeccccc-cccccCCc
Confidence 223 577788999999999999998 5899999999998 68877655
Q ss_pred -cCchhhHHHHHHHHHHHHHHHHhh
Q 006397 469 -LASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 469 -l~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.+|+++++|++|||+||++|++..
T Consensus 547 ~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 547 PSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CCcchhHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999998754
No 55
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=225.65 Aligned_cols=346 Identities=21% Similarity=0.264 Sum_probs=217.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
..+||+|||||+|||+||+.++++| +|+|+|+++..+-.-..+.||-+...+... +..++... ..+...++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~-~~~~ls~~------p~~~~fl~s 74 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA-PDEFLSRN------PGNGHFLKS 74 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc-HHHHHHhC------CCcchHHHH
Confidence 3589999999999999999999999 999999999877666677777777766555 55554321 112222222
Q ss_pred -HHHhh-HHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 166 -VCTEG-PDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 166 -~~~~~-~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+.... .+.+.|.+.+|+++.....|++. +.......+++.|..++++. ||+++++++|.++..
T Consensus 75 al~~ft~~d~i~~~e~~Gi~~~e~~~Gr~F--------------p~sdkA~~Iv~~ll~~~~~~-gV~i~~~~~v~~v~~ 139 (408)
T COG2081 75 ALARFTPEDFIDWVEGLGIALKEEDLGRMF--------------PDSDKASPIVDALLKELEAL-GVTIRTRSRVSSVEK 139 (408)
T ss_pred HHHhCCHHHHHHHHHhcCCeeEEccCceec--------------CCccchHHHHHHHHHHHHHc-CcEEEecceEEeEEe
Confidence 22222 35678889999999877776543 23344678999999999985 999999999999998
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccC
Q 006397 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~ 323 (647)
++++ .. +++.+|+ +|+|+.+|+||||.+ ||.+ ++||+|+..|...|..+... .|+.+.-
T Consensus 140 ~~~~-------f~-l~t~~g~--~i~~d~lilAtGG~S--~P~l----Gstg~gy~iA~~~G~~I~~~-----rpalvpf 198 (408)
T COG2081 140 DDSG-------FR-LDTSSGE--TVKCDSLILATGGKS--WPKL----GSTGFGYPIARQFGHTITPL-----RPALVPF 198 (408)
T ss_pred cCce-------EE-EEcCCCC--EEEccEEEEecCCcC--CCCC----CCCchhhHHHHHcCCccccC-----ccccCCc
Confidence 7422 22 2445665 699999999999988 7766 78999999999999887543 3332211
Q ss_pred CCCCCCCCCCCCccceeeecccC---CC--cEEEeCCCCccccccc--cccccCch-hHHHHHHHHHHHhcCCceEEEeC
Q 006397 324 EGLPIKPKKTRENSFLITEAVRG---DG--GILYNLGMERFMPLYD--ERAELAPR-DVVARSIDDQLKKRNEKYVLLDI 395 (647)
Q Consensus 324 ~g~~~~p~~~~~~~~l~~e~~~~---~g--~~~vn~~G~rf~~~y~--~~~~l~~r-d~~~~~i~~~~~~~~~~~v~lD~ 395 (647)
. ..+ .++ +.+.+ .. ..+.+.+|..|-.+.- .++--.|- -.++..... ..+.++..+.+|+
T Consensus 199 t--------~~~-~~~--~~l~gls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~~-~~~~~~~~i~iDl 266 (408)
T COG2081 199 T--------LDE-SFL--ERLAGLSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWRL-LEKKGGATLSIDL 266 (408)
T ss_pred c--------CCH-HHH--HHhcCCcccceEEEEecCCCceeecceEEEecCCcHHHHHHHHHHHHH-hccCCCceEEEec
Confidence 0 000 000 11111 11 1122222222221100 00101111 012322222 3333346788887
Q ss_pred CC-CChhHHHhh-----------------Chh--HHHHHHHcCCCCCCC-----------------cEEEee-------e
Q 006397 396 SH-KPTEKILSH-----------------FPN--IAAECLKYGLDITSQ-----------------PIPVVP-------A 431 (647)
Q Consensus 396 ~~-~~~~~~~~~-----------------~~~--~~~~~~~~G~d~~~~-----------------~i~v~p-------~ 431 (647)
.. .+.+.+... +|. +.-++++.|+ +++. ..++.| .
T Consensus 267 lP~~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~ 345 (408)
T COG2081 267 LPDVDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYRE 345 (408)
T ss_pred CCCCCHHHHHHHHHhhChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccce
Confidence 63 444433211 111 1122345566 3210 123332 2
Q ss_pred eceecceeEe---CCC-Cc-ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 432 AHYMCGGVRA---GLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 432 ~~~~~GGi~v---D~~-~~-T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
+..|.|||.+ |.+ ++ ..+||||.|||+. .++| ++||.++.+|+++|+.||+.++++.
T Consensus 346 A~VT~GGV~~~eid~kTmesk~vPGLyf~GEvl--Dv~g--~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 346 AEVTAGGVDTKEIDSKTMESKKVPGLYFAGEVL--DVTG--WTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred eEEecCceehhhcCHHHHHhhcCCCcEEEEEEE--Eecc--CCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5678999985 444 33 3799999999997 7776 5789999999999999999988764
No 56
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.92 E-value=1.6e-24 Score=229.49 Aligned_cols=340 Identities=22% Similarity=0.252 Sum_probs=179.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH-H
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV-V 166 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~ 166 (647)
|||+|||||+|||+||+.|++.| +|+|+||+...+-....+++|-+...+...++..+.... ..++..++. +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~------~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGY------GRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-------TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhc------ccchHHHHHHH
Confidence 79999999999999999999999 999999998764333333345544443222222221110 011111111 1
Q ss_pred HHh-hHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 167 CTE-GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 167 ~~~-~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
... ..+.+.+++++|+++...++|+++ +.......+...|.+.+++. ||+|+++++|.+|..++
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~~~~~~gr~f--------------P~s~~a~~Vv~~L~~~l~~~-gv~i~~~~~V~~i~~~~ 139 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPTKIEEDGRVF--------------PKSDKASSVVDALLEELKRL-GVEIHFNTRVKSIEKKE 139 (409)
T ss_dssp HHS-HHHHHHHHHHTT--EEE-STTEEE--------------ETT--HHHHHHHHHHHHHHH-T-EEE-S--EEEEEEET
T ss_pred hcCCHHHHHHHHHhcCCeEEEcCCCEEC--------------CCCCcHHHHHHHHHHHHHHc-CCEEEeCCEeeeeeecC
Confidence 111 235678999999998766666443 33334678999999999885 99999999999999874
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCC
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g 325 (647)
+ .+..|.+ .+++ .+.||.|||||||.+ ||.+ +++|+|+.+|.+.|..++. ..|..+.-.
T Consensus 140 ~----~~f~v~~---~~~~--~~~a~~vILAtGG~S--~p~~----GS~G~gy~~a~~lGh~i~~-----~~PaL~~l~- 198 (409)
T PF03486_consen 140 D----GVFGVKT---KNGG--EYEADAVILATGGKS--YPKT----GSDGSGYRIAKKLGHTITP-----PYPALVPLK- 198 (409)
T ss_dssp T----EEEEEEE---TTTE--EEEESEEEE----SS--SGGG----T-SSHHHHHHHHTT--EEE-----EEEES--EE-
T ss_pred C----ceeEeec---cCcc--cccCCEEEEecCCCC--cccc----CCCcHHHHHHHHCCCcEec-----CCCccCCee-
Confidence 3 4556655 2333 799999999999988 6655 7899999999999988754 334322100
Q ss_pred CCCCCCCCCCccc--eeeecccCCCcE-EEeCCCCccccccccccccCch---------hHHHHHHHHHHHhcCCceEEE
Q 006397 326 LPIKPKKTRENSF--LITEAVRGDGGI-LYNLGMERFMPLYDERAELAPR---------DVVARSIDDQLKKRNEKYVLL 393 (647)
Q Consensus 326 ~~~~p~~~~~~~~--l~~e~~~~~g~~-~vn~~G~rf~~~y~~~~~l~~r---------d~~~~~i~~~~~~~~~~~v~l 393 (647)
..+... .-...++-...+ ++ ++..-... .+++.-+ --+|+.+...+.+.....+.+
T Consensus 199 -------~~~~~~~~~~l~Gv~~~~~~~~~--~~~~~~~~---~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~i 266 (409)
T PF03486_consen 199 -------CDEPWLFFKELSGVRLKAVISLL--DGKKKASE---TGELLFTHYGISGPAILQLSRFIARALNKKKKVEISI 266 (409)
T ss_dssp ---------HHHHHTGGGTT-EEEEEEEEE---ECTCEEE---EEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEE
T ss_pred -------ecchhhhhhhhCCCceeeEEEEe--ccCCccce---eeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEE
Confidence 000000 000000001111 11 11111111 1121111 113444444445445567888
Q ss_pred eCCC-CChhHHHhh--------------------Chh--HHHHHHHcCC-CCCCC-------------------cEEEee
Q 006397 394 DISH-KPTEKILSH--------------------FPN--IAAECLKYGL-DITSQ-------------------PIPVVP 430 (647)
Q Consensus 394 D~~~-~~~~~~~~~--------------------~~~--~~~~~~~~G~-d~~~~-------------------~i~v~p 430 (647)
|+-. .+.+++.+. +|. ...++...++ ++.+. ++++..
T Consensus 267 d~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g 346 (409)
T PF03486_consen 267 DFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTG 346 (409)
T ss_dssp ESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESE
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecc
Confidence 9763 343433221 111 1234566788 66421 233332
Q ss_pred -----eeceecceeE---eCCC-Cc-ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHH
Q 006397 431 -----AAHYMCGGVR---AGLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 431 -----~~~~~~GGi~---vD~~-~~-T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
.++.|.|||. ||.+ ++ ..+||||+|||+. .++| ..||.+|.+|+.+|++||+
T Consensus 347 ~~~~~~A~VT~GGV~~~eid~~TmeSk~~~gLyf~GEvL--DvdG--~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 347 TGGFDKAQVTAGGVDLKEIDPKTMESKLVPGLYFAGEVL--DVDG--PCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp E--TTT-SEEEEEE-GGGB-TTT-BBSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCcCHHHCCHhhhcccCCCCeEEEEEEE--Eecc--CcCchhHhHHHHHHHHhhC
Confidence 2567899998 5554 44 3699999999997 6665 4688899999999999986
No 57
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=201.45 Aligned_cols=389 Identities=22% Similarity=0.257 Sum_probs=235.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC--CCCCccccccCCeeeecCC-------CCCHHHHHHHHHHhcCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE--PHESNTNYAQGGVSAVLCP-------SDSVESHMQDTIVAGAY 156 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~--~~~g~s~~a~Ggi~~~~~~-------~d~~~~~~~~~~~~g~~ 156 (647)
.++||||||+|.|||.||.+||.+| +|+|+|+.. ..+|...|+.||+-.+.++ .|+.+...+|++....+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F 83 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF 83 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence 4689999999999999999999999 999999865 4578889999998766543 35555555666543322
Q ss_pred C-----CCHHHHHHHHHh-hHHHHHHHHHcCCccccC----CCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHc
Q 006397 157 L-----CDDETVRVVCTE-GPDRIRELIAIGASFDRG----EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVS 226 (647)
Q Consensus 157 ~-----~~~~~~~~~~~~-~~~~~~~l~~~G~~~~~~----~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~ 226 (647)
- ....+.+.+.+. +.+.-.||...|+.+... +.|-. .....+.+.+|.. ....+|..+...+.+++++
T Consensus 84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~-~A~ghGNSVPRFH-iTWGTGPgvl~pFvr~~re 161 (552)
T COG3573 84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGS-DAQGHGNSVPRFH-ITWGTGPGVLEPFVRRLRE 161 (552)
T ss_pred CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCc-ccCCCCCCCcceE-EeecCCcchhhHHHHHHHH
Confidence 1 112333333333 235567888888876532 11111 1122234555532 2333454455444444433
Q ss_pred ---CCCcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCeEEECCCccccc------
Q 006397 227 ---DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAGHI------ 283 (647)
Q Consensus 227 ---~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~G~~~~i~A~~VVlAtGg~~~~------ 283 (647)
..-|++.+.++|..|.+. ++ +|+||...-. ..|+ +.|.|.+||+++||++..
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t-~g---rvtGv~GdVLeps~v~RG~~SSR~~~Gd-Fef~A~aviv~SGGIGGnhelVRr 236 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTT-GG---RVTGVRGDVLEPSDVERGQPSSREVVGD-FEFSASAVIVASGGIGGNHELVRR 236 (552)
T ss_pred HHhCCceEEEeeeeccceEee-CC---eEeeecccccCCCccccCCCccceeecc-eEEeeeeEEEecCCcCCCHHHHHh
Confidence 467999999999999987 56 8888864211 1132 478999999999999863
Q ss_pred -CC-----------CCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccceeeecccCCCcEE
Q 006397 284 -YP-----------STTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL 351 (647)
Q Consensus 284 -~~-----------~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~ 351 (647)
|| .+..|.-.+|-.+.++..+|+.++|.+-+..+.-++.+. .|++|.+ .. .-+.|+...+
T Consensus 237 nWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNw-dPiWp~H----gI---RIlPGPSSlW 308 (552)
T COG3573 237 NWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNW-DPIWPNH----GI---RILPGPSSLW 308 (552)
T ss_pred cCchhhcCCChHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccC-CCcCccc----ce---eeccCCccee
Confidence 44 123344578889999999999999988776555555543 3566643 22 2356777899
Q ss_pred EeCCCCccc----cccccccccC---------chhHHHHHHHH-HHHh---------------------cCC--ce--EE
Q 006397 352 YNLGMERFM----PLYDERAELA---------PRDVVARSIDD-QLKK---------------------RNE--KY--VL 392 (647)
Q Consensus 352 vn~~G~rf~----~~y~~~~~l~---------~rd~~~~~i~~-~~~~---------------------~~~--~~--v~ 392 (647)
++..|+|.- +.++..+.|. ..-++.+.|.+ |..- +.+ ++ .|
T Consensus 309 lDa~G~RLp~P~~PGfdtlgTL~hi~~~G~~ysWFiLt~kiI~kEFaLSGsEQNPDLTGkd~rlll~Ra~k~pPgPV~AF 388 (552)
T COG3573 309 LDAAGKRLPVPLFPGFDTLGTLKHITSTGYDYSWFILTRKIIKKEFALSGSEQNPDLTGKDLRLLLRRAGKGPPGPVQAF 388 (552)
T ss_pred ECCCCCcCCCCcCCCcchhhHHHHHhhcCCCceeeeeeHHHHHHHhcccccccCCCccchhHHHHHHHhcCCCCccHHHH
Confidence 999999852 2333221110 00122222222 1100 000 00 11
Q ss_pred EeCC----C-------------------CChhHHH-----------hhCh---hHHHH--HHH-------------cCCC
Q 006397 393 LDIS----H-------------------KPTEKIL-----------SHFP---NIAAE--CLK-------------YGLD 420 (647)
Q Consensus 393 lD~~----~-------------------~~~~~~~-----------~~~~---~~~~~--~~~-------------~G~d 420 (647)
+|-- . ++.+.+. ..+. ++..+ ... .=+|
T Consensus 389 mdrGeDFvv~~~L~eLVa~MN~l~g~~~Ld~a~v~r~i~aRDrev~N~~sKDaQitairgARaylgdrl~R~akph~llD 468 (552)
T COG3573 389 MDRGEDFVVADTLRELVAGMNELTGGEPLDYATVEREIEARDREVVNKYSKDAQITAIRGARAYLGDRLTRVAKPHRLLD 468 (552)
T ss_pred HhcCcceehhhhHHHHHHHhhccCCCCcccHHHHHHHHHhhhhhhhcccccchhhhhHHHHHHHhhhhhhhccCcccccC
Confidence 1100 0 0000000 0000 00000 000 0134
Q ss_pred CCCCc-EEEe--eeeceecceeEeCCCCc------ccccCcccccccc---cCCCCCCCccCchhhHHHHHHHHHHHHHH
Q 006397 421 ITSQP-IPVV--PAAHYMCGGVRAGLQGE------TNVRGLYVAGEVA---CTGLHGANRLASNSLLEALVFARRAVQPS 488 (647)
Q Consensus 421 ~~~~~-i~v~--p~~~~~~GGi~vD~~~~------T~ipGLyAaGe~a---~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a 488 (647)
|...| |.|. --..-+.||+.+|.+.+ +++|||||+||++ .||+||-|.|-|.-|..|+.+|+.||+.+
T Consensus 469 Pa~GPLIAVrLhiLTRKtLGGl~TdL~~rVl~A~GqPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaa 548 (552)
T COG3573 469 PANGPLIAVRLHILTRKTLGGLETDLDARVLGADGQPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGRAA 548 (552)
T ss_pred cccCceEEEEEEeeeehhccCcccchhhhhhCCCCCCCcchhhcchhcccCCCcccchhhhccceecceeecchhhhhhh
Confidence 44445 2332 22345789999998876 5999999999998 46899999999999999999999999887
Q ss_pred HH
Q 006397 489 ID 490 (647)
Q Consensus 489 ~~ 490 (647)
+.
T Consensus 549 a~ 550 (552)
T COG3573 549 AG 550 (552)
T ss_pred cc
Confidence 64
No 58
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=99.92 E-value=3.4e-25 Score=196.93 Aligned_cols=112 Identities=37% Similarity=0.567 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHHHhhh-ccCcccccchHHHHHHHHHHHHHHHHHHHHHhcccCccc
Q 006397 530 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF-EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGL 608 (647)
Q Consensus 530 ~~~l~~~m~~~~g~~r~~~~L~~al~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~ 608 (647)
+++||++||+++||+|++++|++|+++|++|++++.++.. ......++++.+++|++||+++|++++.|||.|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 4789999999999999999999999999999988854322 123345788899999999999999999999999999999
Q ss_pred ccccCCCCCccCCCCCeeecC--CCcccccccccc
Q 006397 609 HYMVDFPHVEENKRLPTIILP--SLVNCTWSSRQL 641 (647)
Q Consensus 609 h~R~D~P~~~~~~~~~~~~~~--~~~~~~~~~~~~ 641 (647)
|||.|||++||++|.+++++. +..+..+...|+
T Consensus 81 H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~pv 115 (129)
T PF02910_consen 81 HYREDYPERDDENWLKHIIVRLDGGGEMRISYEPV 115 (129)
T ss_dssp BEBTTSSSCETTTCSEEEEEEEETTTEEEEEEEE-
T ss_pred chhccccccccccccEEEEEEEcCCCceEEEEecC
Confidence 999999999988888876652 322355555554
No 59
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.89 E-value=5.6e-21 Score=204.59 Aligned_cols=336 Identities=21% Similarity=0.270 Sum_probs=199.5
Q ss_pred EEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH-HHH-
Q 006397 92 SVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV-VCT- 168 (647)
Q Consensus 92 vIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~- 168 (647)
+|||||+||++||+.|+++| +|+|+||.+..++....+.+|.+......+ ...++... ..++..+.. +..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~-~~~~~~~~------~~~~~~~~~~l~~~ 73 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCP-TPEFVAYY------PRNGKFLRSALSRF 73 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCc-chhHHHhc------CCCcHHHHHHHHhC
Confidence 69999999999999999999 999999998776655555566655443322 22221111 112222222 211
Q ss_pred hhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006397 169 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 169 ~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
...+.++|+.++|+++....+|.++ +.......+...|.+.+++. |++++.++.|+++..+ ++
T Consensus 74 ~~~d~~~~~~~~Gv~~~~~~~g~~~--------------p~~~~a~~v~~~L~~~l~~~-gv~i~~~~~V~~i~~~-~~- 136 (400)
T TIGR00275 74 SNKDLIDFFESLGLELKVEEDGRVF--------------PCSDSAADVLDALLNELKEL-GVEILTNSKVKSIKKD-DN- 136 (400)
T ss_pred CHHHHHHHHHHcCCeeEEecCCEeE--------------CCCCCHHHHHHHHHHHHHHC-CCEEEeCCEEEEEEec-CC-
Confidence 2356678889999988754444221 12223567888899888874 9999999999999764 32
Q ss_pred CceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCC
Q 006397 249 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 328 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~ 328 (647)
...+.. . ++ .+.|+.||+|+|+++ |+. .+++|+|+.++.++|+.+.. ++|..+...-.
T Consensus 137 ---~~~v~~---~-~~--~i~ad~VIlAtG~~s--~p~----~gs~G~g~~la~~lG~~i~~-----~~P~l~~l~~~-- 194 (400)
T TIGR00275 137 ---GFGVET---S-GG--EYEADKVILATGGLS--YPQ----LGSTGDGYEIAESLGHTIVP-----PVPALVPLTLD-- 194 (400)
T ss_pred ---eEEEEE---C-Cc--EEEcCEEEECCCCcc--cCC----CCCCcHHHHHHHHCCCCEec-----ccceEeEEEeC--
Confidence 223432 2 33 589999999999987 443 37899999999999998753 34443321100
Q ss_pred CCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchh---------HHHHHHHHHHHhcCCceEEEeCCC-C
Q 006397 329 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRD---------VVARSIDDQLKKRNEKYVLLDISH-K 398 (647)
Q Consensus 329 ~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd---------~~~~~i~~~~~~~~~~~v~lD~~~-~ 398 (647)
.| .+.....++-...+.+..+|++|.++. +++...+ -+++.+.+.+.......+++|+-. .
T Consensus 195 ~~------~~~~l~Gv~~~~~~~~~~~~~~~~~~~---g~llft~~gisG~~vl~~s~~~~~~~~~~~~~~~~id~~p~~ 265 (400)
T TIGR00275 195 ES------FLKELSGISLDGVVLSLVNGKKVLEEF---GDLLFTHFGLSGPAILDLSAFAARALLKHKGVELEIDLLPDL 265 (400)
T ss_pred Cc------ccccCCCCcCccEEEEecCCcEEEeec---ccEEEECCCcCHHHHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 00 000001111112222334455554321 1211110 123333333322333568889864 3
Q ss_pred ChhHHHhh--------------------Chh--HHHHHHHcCCCCCCC-------------------cEEEee-----ee
Q 006397 399 PTEKILSH--------------------FPN--IAAECLKYGLDITSQ-------------------PIPVVP-----AA 432 (647)
Q Consensus 399 ~~~~~~~~--------------------~~~--~~~~~~~~G~d~~~~-------------------~i~v~p-----~~ 432 (647)
+.+++... +|. +..+++..|+++++. ++++.. .+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a 345 (400)
T TIGR00275 266 SEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEA 345 (400)
T ss_pred CHHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCcccee
Confidence 44443211 111 122345568875531 233322 35
Q ss_pred ceecceeEe---CCC-Cc-ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHH
Q 006397 433 HYMCGGVRA---GLQ-GE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQ 486 (647)
Q Consensus 433 ~~~~GGi~v---D~~-~~-T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~ 486 (647)
+.|.|||.+ |.+ ++ .-+||||.|||+. .+.| ..||.+|.+|+.+|+.||+
T Consensus 346 ~vt~GGv~~~ei~~~~m~~k~~~gly~~GE~l--Dv~g--~~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 346 EVTAGGVSLKEINPKTMESKLVPGLYFAGEVL--DVDG--DTGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred EEecCcccchhcChhhhhhcCCCCeEEEEEEE--ecCC--CCCchHHHHHHHHHHHhcC
Confidence 678999984 443 44 4689999999997 6665 4688999999999999973
No 60
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.79 E-value=3.8e-19 Score=189.79 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=163.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+||++|||+|++|..||++|++.| +|+|+|+... -|+++.+.|.+. .....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~-lGGtCln~GCIP--------------------------sK~Ll 55 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER-LGGTCLNVGCIP--------------------------SKALL 55 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC-cCceEEeeCccc--------------------------cHHHH
Confidence 4799999999999999999999999 9999999963 355666655443 22111
Q ss_pred HHHhhHHHHHHHH-HcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 166 VCTEGPDRIRELI-AIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 166 ~~~~~~~~~~~l~-~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
...+....+.... .+|+..... .+. +.......+.....+...+ +.+.+..||+++.++-- + .+
T Consensus 56 ~~a~~~~~~~~~~~~~Gi~~~~~---~id--------~~~~~~~k~~v~~~~~~~~-~~l~~~~~V~vi~G~a~--f-~~ 120 (454)
T COG1249 56 HAAEVIEEARHAAKEYGISAEVP---KID--------FEKLLARKDKVVRLLTGGV-EGLLKKNGVDVIRGEAR--F-VD 120 (454)
T ss_pred HHHHHHHHHhhcccccceecCCC---CcC--------HHHHHHHHHHHHHHHhhhH-HHHHhhCCCEEEEEEEE--E-CC
Confidence 1211111122221 244443321 000 0000000000011122222 23333459999988532 2 12
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCC--CCCCCCCCcchhHHHHHH-------cCCeeccccccc
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP--STTNPLVATGDGMAMAHR-------AQAVISNMEFVQ 315 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~--~~~~~~~~~Gdg~~~a~~-------aGa~l~~~ef~q 315 (647)
+. + |.+.. . +..+++|+.+|+|||+.+...+ ...+....+.++.....+ +|+.++++||.+
T Consensus 121 -~~---~---v~V~~-~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~ 190 (454)
T COG1249 121 -PH---T---VEVTG-E--DKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFAS 190 (454)
T ss_pred -CC---E---EEEcC-C--CceEEEeCEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHH
Confidence 22 2 23322 1 2347999999999999987655 223333344444333333 688999999998
Q ss_pred ccceeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEE---
Q 006397 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL--- 392 (647)
Q Consensus 316 ~~p~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~--- 392 (647)
++.. |-+ -+.+-..+.++++.+|+. +++.+.+.+.+++ ..++
T Consensus 191 ~~~~-------------------LG~-------~VTiie~~~~iLp~~D~e--------i~~~~~~~l~~~g-v~i~~~~ 235 (454)
T COG1249 191 VFAA-------------------LGS-------KVTVVERGDRILPGEDPE--------ISKELTKQLEKGG-VKILLNT 235 (454)
T ss_pred HHHH-------------------cCC-------cEEEEecCCCCCCcCCHH--------HHHHHHHHHHhCC-eEEEccc
Confidence 7622 111 155566778888866654 5666666665521 1122
Q ss_pred -------------EeCCCCChhHHHhhChhHHHHHHHcCCCCCCCcEEEe--eeeceecceeEeCCCCcccccCcccccc
Q 006397 393 -------------LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVV--PAAHYMCGGVRAGLQGETNVRGLYVAGE 457 (647)
Q Consensus 393 -------------lD~~~~~~~~~~~~~~~~~~~~~~~G~d~~~~~i~v~--p~~~~~~GGi~vD~~~~T~ipGLyAaGe 457 (647)
+.+.......+ ..+.++...|..|+.+.+-+. .-.....|+|.||..++|++||+||+||
T Consensus 236 ~v~~~~~~~~~v~v~~~~g~~~~~-----~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GD 310 (454)
T COG1249 236 KVTAVEKKDDGVLVTLEDGEGGTI-----EADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGD 310 (454)
T ss_pred eEEEEEecCCeEEEEEecCCCCEE-----EeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeec
Confidence 11111100000 112223344555544421111 1111123899999778888999999999
Q ss_pred cccCCCCCCCccCchhhHHHHHHHHHHHHHHHH
Q 006397 458 VACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 458 ~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|+ +|.. |+. -|.-.|++|+++++.
T Consensus 311 V~-~~~~----Lah----~A~~eg~iaa~~i~g 334 (454)
T COG1249 311 VI-GGPM----LAH----VAMAEGRIAAENIAG 334 (454)
T ss_pred cC-CCcc----cHh----HHHHHHHHHHHHHhC
Confidence 97 3431 333 355568889988875
No 61
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.69 E-value=1.1e-14 Score=151.83 Aligned_cols=323 Identities=15% Similarity=0.110 Sum_probs=184.0
Q ss_pred CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHh--hHHHHHHHHHcCCccccCCC
Q 006397 112 TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTE--GPDRIRELIAIGASFDRGED 189 (647)
Q Consensus 112 ~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~l~~~G~~~~~~~~ 189 (647)
+|+|+||....+-.-..+++|-|...+.... ..++. .+..++..++..... ..+.++|++++|+++....+
T Consensus 3 ~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~-~~~~~------~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~ 75 (376)
T TIGR03862 3 EVDVFEAKPSVGRKFLMAGKSGLNLTHSEPL-PRFIE------RYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSS 75 (376)
T ss_pred eEEEEeCCCCccceeEEcCCCCcccCCCCch-HHHHH------hcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCC
Confidence 7999999987765555566677766553322 22211 122344544433332 24678899999999887777
Q ss_pred CcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEE
Q 006397 190 GNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 269 (647)
Q Consensus 190 g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~ 269 (647)
|+++ +.......+..+|...+++ .||+|+.++.|++| + ++ . .++.+ .++. ..++
T Consensus 76 grvf--------------P~S~~A~sVv~~L~~~l~~-~gV~i~~~~~V~~i--~-~~---~-~~v~~---~~~~-~~~~ 129 (376)
T TIGR03862 76 GRVF--------------PVEMKAAPLLRAWLKRLAE-QGVQFHTRHRWIGW--Q-GG---T-LRFET---PDGQ-STIE 129 (376)
T ss_pred CEEC--------------CCCCCHHHHHHHHHHHHHH-CCCEEEeCCEEEEE--e-CC---c-EEEEE---CCCc-eEEe
Confidence 6543 3334567899999999988 49999999999998 3 22 2 23433 2221 2589
Q ss_pred cCeEEECCCcccccCCCCCCCCCCcchhHHHHHHcCCeecccccccccceeccCCCCCCCCCCCCCccce-eeecccCCC
Q 006397 270 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFL-ITEAVRGDG 348 (647)
Q Consensus 270 A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~aGa~l~~~ef~q~~p~~~~~~g~~~~p~~~~~~~~l-~~e~~~~~g 348 (647)
|+.||+||||.+ ||.+ +.+|+|+.+|...|..++. .+|..+.-.-. .+. .+. ....++-..
T Consensus 130 a~~vIlAtGG~s--~p~~----Gs~g~gy~la~~lGh~i~~-----~~PaL~pl~~~--~~~-----~~~~~L~Gv~~~~ 191 (376)
T TIGR03862 130 ADAVVLALGGAS--WSQL----GSDGAWQQVLDQRGVSVAP-----FAPANCGFLVD--WSA-----HFASRFAGEPLKR 191 (376)
T ss_pred cCEEEEcCCCcc--cccc----CCCcHHHHHHHHCCCcccC-----CcCeeceEEcc--Cch-----hhHhhcCCCcccc
Confidence 999999999988 6655 6799999999999988764 34433321000 000 000 000011111
Q ss_pred c-EEEeC---CCCccccccccccccCch-hHHHHHHHHHHHhcCCceEEEeCCC-CChhHHHhhC----h--hHHHHHH-
Q 006397 349 G-ILYNL---GMERFMPLYDERAELAPR-DVVARSIDDQLKKRNEKYVLLDISH-KPTEKILSHF----P--NIAAECL- 415 (647)
Q Consensus 349 ~-~~vn~---~G~rf~~~y~~~~~l~~r-d~~~~~i~~~~~~~~~~~v~lD~~~-~~~~~~~~~~----~--~~~~~~~- 415 (647)
. +.++. .|+-.+..|. --.|- --+++.+...+.......+.+|+-. .+.+++...+ + .+...+.
T Consensus 192 ~~~~~~~~~~~GellFTh~G---iSGpavl~lS~~~~~~~~~~~~~~i~idf~P~~~~~~l~~~l~~~~~~k~l~~~L~~ 268 (376)
T TIGR03862 192 VNATAGTQQTRGEIVITARG---LEGGLIYALSAALREQIKAGGSANLFLDLLPDLSLEQVTKRLAAPRGKQSLSNHLRK 268 (376)
T ss_pred eEEEeCCeeEeeeEEEECCC---ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHhhcccchHHHHHHH
Confidence 1 11110 1111111110 00010 0134433333232333458888753 3444443211 1 1111111
Q ss_pred HcCCCCC-------------------------CCcEEEee-----eeceecceeE---eCCCCcc-cccCcccccccccC
Q 006397 416 KYGLDIT-------------------------SQPIPVVP-----AAHYMCGGVR---AGLQGET-NVRGLYVAGEVACT 461 (647)
Q Consensus 416 ~~G~d~~-------------------------~~~i~v~p-----~~~~~~GGi~---vD~~~~T-~ipGLyAaGe~a~g 461 (647)
..|+++. .-++++.. .+..|.|||. ||.+++. -+||||.|||+.
T Consensus 269 ~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~~~Sk~~pgLYf~GEvL-- 346 (376)
T TIGR03862 269 ALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDESLMLKARPGVFCAGEML-- 346 (376)
T ss_pred HhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChhhhcccCCCeEEEEEEE--
Confidence 1122210 11233332 3567899997 5666663 599999999997
Q ss_pred CCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 462 GLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 462 G~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.+.| ..||.+|.+|+..|++||++++.|+
T Consensus 347 DvdG--~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 347 DWEA--PTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred eecc--CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 6665 4688999999999999999998775
No 62
>PLN02546 glutathione reductase
Probab=99.67 E-value=3.5e-16 Score=172.95 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEe
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITK 118 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk 118 (647)
...+|||+|||+|++|+.||+.|++.| +|+|+|+
T Consensus 76 ~~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 76 RHYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 355799999999999999999999999 9999996
No 63
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.67 E-value=5.7e-16 Score=168.86 Aligned_cols=42 Identities=33% Similarity=0.482 Sum_probs=34.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~G 131 (647)
+|||+|||||+||++||+.|+++| +|+|+|+... |+++.+.|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~--GG~c~~~g 44 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRV--GGTCVIRG 44 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCcc--CceeecCC
Confidence 599999999999999999999999 9999999643 33444444
No 64
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.67 E-value=3.8e-16 Score=170.12 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=35.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Gg 132 (647)
+|||+|||||+||+.||+.|++.| +|+|+||... |+++.+.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~--GG~c~~~gc 45 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKL--GGTCVNVGC 45 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccccc--ccceeccCc
Confidence 589999999999999999999999 9999999653 444444443
No 65
>PLN02507 glutathione reductase
Probab=99.67 E-value=8.5e-16 Score=169.07 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=31.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEe
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITK 118 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk 118 (647)
..+|||+|||||++|+.||+.|++.| +|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 45799999999999999999999999 9999997
No 66
>PTZ00058 glutathione reductase; Provisional
Probab=99.66 E-value=6.4e-16 Score=170.78 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=39.2
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
...+|||+|||||+||+.||+.|++.| +|+||||... |+++.+.|.+
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~--GGtCln~GCi 92 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYL--GGTCVNVGCV 92 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccc--cccccccCCC
Confidence 346799999999999999999999999 9999999743 5565666654
No 67
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.63 E-value=1.6e-15 Score=166.24 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=36.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Gg 132 (647)
.+|||+|||||++|+.||..|++.| +|+|+|+.+.. |+++.+.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~-GG~c~n~gc 48 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTL-GGVCLNVGC 48 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcc-cccccCCCc
Confidence 3599999999999999999999999 99999997544 344444443
No 68
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.63 E-value=2.1e-15 Score=165.04 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhc-C-CeEEEEec
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKA 119 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~-G-~V~vlEk~ 119 (647)
+|||+|||||++|..||+.|++. | +|+|||+.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 59999999999999999999997 8 99999984
No 69
>PRK06116 glutathione reductase; Validated
Probab=99.62 E-value=2.7e-15 Score=164.01 Aligned_cols=34 Identities=38% Similarity=0.544 Sum_probs=31.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.+|||+|||||+||++||+.|+++| +|+|+|+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 3599999999999999999999999 999999964
No 70
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.62 E-value=3e-15 Score=164.01 Aligned_cols=45 Identities=24% Similarity=0.384 Sum_probs=35.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
+|||+||||||||+.||+.|+++| +|+|+|+....| +++.+.|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~G-G~c~~~gci 48 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLG-GTCLNVGCM 48 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcee-eeeccCccc
Confidence 489999999999999999999999 999999854333 334444433
No 71
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.61 E-value=5.8e-15 Score=161.89 Aligned_cols=49 Identities=33% Similarity=0.503 Sum_probs=37.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeee
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAV 136 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~ 136 (647)
+|||||||+|++|+.+|+.|++.| +|+|||+..+..+++.+..||.+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 589999999999999999999999 9999998543222222334555433
No 72
>PRK06370 mercuric reductase; Validated
Probab=99.60 E-value=1.7e-14 Score=158.36 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=33.0
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
+.+|||+|||||+||++||+.|++.| +|+|+|+...
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~ 39 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL 39 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 44699999999999999999999999 9999999754
No 73
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=7.1e-15 Score=144.43 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=151.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+||.+|||||..|+.+|.++++.| +|.|+|..... |+|+.+.|. -|..+..
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l-GGTCVn~GC--------------------------VPKKvm~ 71 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL-GGTCVNVGC--------------------------VPKKVMW 71 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc-CceEEeecc--------------------------ccceeEE
Confidence 4799999999999999999999999 99999987433 344444332 2332222
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
++....+.++...++|++.....+ + .+..+....+.. -.-...+++......+|+++.+.. .+. +
T Consensus 72 ~~a~~~~~~~da~~yG~~~~~~~~--f--------dW~~ik~krday-i~RLngIY~~~L~k~~V~~i~G~a--~f~-~- 136 (478)
T KOG0405|consen 72 YAADYSEEMEDAKDYGFPINEEGS--F--------DWKVIKQKRDAY-ILRLNGIYKRNLAKAAVKLIEGRA--RFV-S- 136 (478)
T ss_pred ehhhhhHHhhhhhhcCCccccccC--C--------cHHHHHhhhhHH-HHHHHHHHHhhccccceeEEeeeE--EEc-C-
Confidence 333333334444556665532211 1 111110001100 012234555555556899888753 222 1
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCCCCCCCcchhHHHHHH-------cCCeecccccccccc
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHR-------AQAVISNMEFVQFHP 318 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~~Gdg~~~a~~-------aGa~l~~~ef~q~~p 318 (647)
++ .| -|.. .+|+...+.|+.+++|+||.+............+.||..-..+ +||.++..||...+.
T Consensus 137 ~~---~v-~V~~---~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~ 209 (478)
T KOG0405|consen 137 PG---EV-EVEV---NDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA 209 (478)
T ss_pred CC---ce-EEEe---cCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEEccceEEEEhhhHHh
Confidence 33 22 2332 4566667999999999999875432222223466677655443 677778777766431
Q ss_pred eeccCCCCCCCCCCCCCccceeeecccCCCcEEEeCCCCccccccccccccCchhHHHHHHHHHHHhcCCceEEEeCCCC
Q 006397 319 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHK 398 (647)
Q Consensus 319 ~~~~~~g~~~~p~~~~~~~~l~~e~~~~~g~~~vn~~G~rf~~~y~~~~~l~~rd~~~~~i~~~~~~~~~~~v~lD~~~~ 398 (647)
. |.++ .-+-.+.+.++..+|+. ++..+.+++...+ +-+.....
T Consensus 210 g-------------------Lgse-------thlfiR~~kvLR~FD~~--------i~~~v~~~~~~~g---invh~~s~ 252 (478)
T KOG0405|consen 210 G-------------------LGSE-------THLFIRQEKVLRGFDEM--------ISDLVTEHLEGRG---INVHKNSS 252 (478)
T ss_pred h-------------------cCCe-------eEEEEecchhhcchhHH--------HHHHHHHHhhhcc---eeeccccc
Confidence 1 1111 11112345566655542 3444444444322 11111000
Q ss_pred Ch------hHH------HhhChhHHHHHHHcCCCCCCCcEEEe--eeeceecceeEeCCCCcccccCcccccccc
Q 006397 399 PT------EKI------LSHFPNIAAECLKYGLDITSQPIPVV--PAAHYMCGGVRAGLQGETNVRGLYVAGEVA 459 (647)
Q Consensus 399 ~~------~~~------~~~~~~~~~~~~~~G~d~~~~~i~v~--p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a 459 (647)
.. +.+ ...++.++.++...|.+|....+.+. ..-....|-|.||++.+|+||++||+||++
T Consensus 253 ~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~ 327 (478)
T KOG0405|consen 253 VTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVT 327 (478)
T ss_pred ceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEecccc
Confidence 00 000 00112223333445666554332211 111223588999999999999999999996
No 74
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.57 E-value=4.1e-14 Score=155.37 Aligned_cols=40 Identities=40% Similarity=0.490 Sum_probs=34.9
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
+..|||+|||||++|+.||+.|++.| +|+|+|+....+|.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 34699999999999999999999999 99999997655443
No 75
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.56 E-value=3.9e-14 Score=155.69 Aligned_cols=31 Identities=42% Similarity=0.620 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEe
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITK 118 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk 118 (647)
+|||+|||||+||++||+.|++.| +|+|||+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 599999999999999999999999 9999998
No 76
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.56 E-value=2.2e-14 Score=157.43 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=32.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.+|||+|||||+||+.||+.|+++| +|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 3699999999999999999999999 999999977
No 77
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.56 E-value=4e-14 Score=155.65 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=36.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Gg 132 (647)
..|||+|||||+||+.||+.|++.| +|+|+|+... |+++.+.|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~--GG~c~~~gc 47 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKL--GGTCLHKGC 47 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC--CcceEcCCc
Confidence 3699999999999999999999999 9999999743 444444443
No 78
>PRK14694 putative mercuric reductase; Provisional
Probab=99.55 E-value=4.4e-14 Score=155.05 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=37.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Gg 132 (647)
...|||+|||||+||++||+.|++.| +|+|+|++.. |+++.+.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~--GGtc~n~Gc 49 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTI--GGTCVNIGC 49 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcccc--ccceecCCc
Confidence 45799999999999999999999999 9999999753 344455443
No 79
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.55 E-value=7.6e-14 Score=139.78 Aligned_cols=144 Identities=22% Similarity=0.249 Sum_probs=101.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.++||+|||||+||++||+.|++.| +|+|+||....+|... .||.. .+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~--~gg~~-----------------------~~~~~v-- 76 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW--GGGML-----------------------FNKIVV-- 76 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--cCccc-----------------------cccccc--
Confidence 4689999999999999999999999 9999999876654321 12211 000000
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
.....+++.++|+++....++.+ .. .+..+...|.+.+.+. |+++++++.|+++..++
T Consensus 77 ----~~~~~~~l~~~gv~~~~~~~g~~---------------~v--d~~~l~~~L~~~A~~~-Gv~I~~~t~V~dl~~~~ 134 (257)
T PRK04176 77 ----QEEADEILDEFGIRYKEVEDGLY---------------VA--DSVEAAAKLAAAAIDA-GAKIFNGVSVEDVILRE 134 (257)
T ss_pred ----hHHHHHHHHHCCCCceeecCcce---------------ec--cHHHHHHHHHHHHHHc-CCEEEcCceeceeeEeC
Confidence 11345677888988765333211 11 2457888899999874 99999999999998865
Q ss_pred CCCCceEEEEEEEecC------CCeEEEEEcCeEEECCCcccc
Q 006397 246 DGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~------~G~~~~i~A~~VVlAtGg~~~ 282 (647)
++ +|.|+.+.+.. ..+...|+|+.||+|||+.+.
T Consensus 135 ~g---~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 135 DP---RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred CC---cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 55 78898875321 123468999999999997764
No 80
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.55 E-value=3.5e-14 Score=154.90 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=36.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Gg 132 (647)
+|||+|||||+||+.||+.|+++| +|+|+|+.+...|+++.+.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gc 48 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGC 48 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccc
Confidence 599999999999999999999999 999999976433444444443
No 81
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.55 E-value=5e-14 Score=154.62 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=36.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
+|||+|||||+||+.||+.|++.| +|+|+|++.. |+++.+.|.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~--GG~c~~~gci 48 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW--GGVCLNVGCI 48 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC--CCceecCCcc
Confidence 589999999999999999999999 9999999754 3444444433
No 82
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-14 Score=146.39 Aligned_cols=50 Identities=24% Similarity=0.174 Sum_probs=38.8
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|-|.||++++|||||+|||||++. .. .| .+..|+-.|.+|+.+|.+|+.
T Consensus 252 ~g~I~v~~~~~TsvpGifAaGDv~~-~~---~r----qi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 252 NGYIVVDEEMETSVPGIFAAGDVAD-KN---GR----QIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CCcEEcCCCcccCCCCEEEeEeecc-Cc---cc----EEeehhhhHHHHHHHHHHHhh
Confidence 4779999999999999999999972 22 23 334456668889998888864
No 83
>PLN02661 Putative thiazole synthesis
Probab=99.54 E-value=1.9e-13 Score=139.85 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=98.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhc-C-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~-G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
..++||+|||||++|++||+.|++. | +|+||||....+|+... .|.+. +.-.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~-gg~l~------------------------~~~v- 143 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWL-GGQLF------------------------SAMV- 143 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceee-Ccccc------------------------cccc-
Confidence 3468999999999999999999986 7 99999998776553321 11110 0000
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
++. ...++++++|++|+.. ++ +.. .. ....+...|.+++.++.|+++++++.+++|+.
T Consensus 144 ---v~~--~a~e~LeElGV~fd~~-dg-y~v----------v~-----ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~ 201 (357)
T PLN02661 144 ---VRK--PAHLFLDELGVPYDEQ-EN-YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 201 (357)
T ss_pred ---ccc--HHHHHHHHcCCCcccC-CC-eeE----------ec-----chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe
Confidence 000 1234678899998653 22 111 00 12356678888887667999999999999998
Q ss_pred cCCCCCceEEEEEEEe------cCC---CeEEEEEcCeEEECCCccc
Q 006397 244 TLDGPDAVCHGVDTLN------VET---QEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~------~~~---G~~~~i~A~~VVlAtGg~~ 281 (647)
+ ++ +|.||.+.. ..+ .+...|+|++||+|||+.+
T Consensus 202 ~-~g---rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 202 K-GD---RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred c-CC---EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 7 55 899998631 112 2345799999999999544
No 84
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7.8e-14 Score=129.44 Aligned_cols=139 Identities=22% Similarity=0.255 Sum_probs=101.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
+.||+|||+||+||+||++||++| +|+|+|+.-..+|+... ||+.. +.-.++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~--GGmlf-----------------------~~iVv~-- 82 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG--GGMLF-----------------------NKIVVR-- 82 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc--ccccc-----------------------ceeeec--
Confidence 579999999999999999999999 99999999877765533 23211 111111
Q ss_pred HHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006397 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
.+.-+.|++.|+++....+|.+.. ....+...|..++.+. |++|++.+.|.+++..++
T Consensus 83 ----~~a~~iL~e~gI~ye~~e~g~~v~-----------------ds~e~~skl~~~a~~a-Gaki~n~~~veDvi~r~~ 140 (262)
T COG1635 83 ----EEADEILDEFGIRYEEEEDGYYVA-----------------DSAEFASKLAARALDA-GAKIFNGVSVEDVIVRDD 140 (262)
T ss_pred ----chHHHHHHHhCCcceecCCceEEe-----------------cHHHHHHHHHHHHHhc-CceeeecceEEEEEEecC
Confidence 112446778899998777764331 1456777888888774 999999999999998755
Q ss_pred CCCceEEEEEEEecC------CCeEEEEEcCeEEECCC
Q 006397 247 GPDAVCHGVDTLNVE------TQEVVRFISKVTLLASG 278 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~------~G~~~~i~A~~VVlAtG 278 (647)
. +|.||++.-+. .=.+.+++|+.||-|||
T Consensus 141 ~---rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTG 175 (262)
T COG1635 141 P---RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATG 175 (262)
T ss_pred C---ceEEEEEecchhhhcccccCcceeeEEEEEeCCC
Confidence 3 79999874211 11345799999999998
No 85
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.53 E-value=3.7e-14 Score=158.86 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=37.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
.+|||+|||+|++|..||+.|++.| +|+|||++...-|+++.+.|.+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCi 162 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCI 162 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCc
Confidence 4799999999999999999999999 9999997532235555555533
No 86
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.52 E-value=1.4e-13 Score=150.84 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=30.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
.||+|||+|++|+.+|..|+++| +|+|+||...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~ 35 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGL 35 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 38999999999999999999999 9999999764
No 87
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.51 E-value=3.1e-14 Score=157.80 Aligned_cols=114 Identities=25% Similarity=0.309 Sum_probs=75.6
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...|||+|||||+||++||+.|++.| +|+|++.. .+|...... +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~-~-------------------------------- 254 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTV-G-------------------------------- 254 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCc-C--------------------------------
Confidence 45699999999999999999999999 99999752 222110000 0
Q ss_pred HHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
+..+ .+. ....+..+...+.+.+++. |++++.+++|+++..+
T Consensus 255 ---------~~~~--~~~--------------------------~~~~~~~l~~~l~~~l~~~-gv~i~~~~~V~~I~~~ 296 (515)
T TIGR03140 255 ---------IENL--ISV--------------------------PYTTGSQLAANLEEHIKQY-PIDLMENQRAKKIETE 296 (515)
T ss_pred ---------cccc--ccc--------------------------CCCCHHHHHHHHHHHHHHh-CCeEEcCCEEEEEEec
Confidence 0000 000 0112456777777788775 9999999999999765
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
++. . .+.. .+|+ .+.++.+|+|||+..+
T Consensus 297 ~~~----~-~v~~---~~g~--~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 297 DGL----I-VVTL---ESGE--VLKAKSVIVATGARWR 324 (515)
T ss_pred CCe----E-EEEE---CCCC--EEEeCEEEECCCCCcC
Confidence 322 1 2222 3454 6899999999998754
No 88
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.50 E-value=2.8e-13 Score=148.76 Aligned_cols=42 Identities=36% Similarity=0.499 Sum_probs=34.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~G 131 (647)
.|||+|||||+||+.||+.|++.| +|+|+|+ ...+| ++.+.|
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG-~~~~~g 43 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGG-TCLNVG 43 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCC-ceeecC
Confidence 389999999999999999999999 9999999 43333 333333
No 89
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.50 E-value=3.6e-13 Score=126.26 Aligned_cols=141 Identities=23% Similarity=0.293 Sum_probs=90.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCee--eecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS--AVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~--~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.++||+|||+|++||+||++|++.| +|+|+|+....+|.... ||+. ...-
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~--Gg~lf~~iVV------------------------- 68 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG--GGMLFNKIVV------------------------- 68 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---CTT---EEE-------------------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc--cccccchhhh-------------------------
Confidence 4699999999999999999999999 99999998876654422 2221 1100
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+ .+....|+++|+++....+|.+. . .+..+...|..++.+ .|++|++.+.|.+++.
T Consensus 69 ----q--~~a~~iL~elgi~y~~~~~g~~v---------------~--d~~~~~s~L~s~a~~-aGakifn~~~vEDvi~ 124 (230)
T PF01946_consen 69 ----Q--EEADEILDELGIPYEEYGDGYYV---------------A--DSVEFTSTLASKAID-AGAKIFNLTSVEDVIV 124 (230)
T ss_dssp ----E--TTTHHHHHHHT---EE-SSEEEE---------------S---HHHHHHHHHHHHHT-TTEEEEETEEEEEEEE
T ss_pred ----h--hhHHHHHHhCCceeEEeCCeEEE---------------E--cHHHHHHHHHHHHhc-CCCEEEeeeeeeeeEE
Confidence 0 01134567788988765554222 1 245777888888887 6999999999999998
Q ss_pred cCCCCCceEEEEEEEecC------CCeEEEEEcCeEEECCCccc
Q 006397 244 TLDGPDAVCHGVDTLNVE------TQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~------~G~~~~i~A~~VVlAtGg~~ 281 (647)
.+++ +|.|+++.-+. .=.+.+|+|+.||-|||--+
T Consensus 125 r~~~---rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 125 REDD---RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp ECSC---EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred EcCC---eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 7545 99999885310 12456899999999999443
No 90
>PRK13748 putative mercuric reductase; Provisional
Probab=99.50 E-value=2.9e-13 Score=152.30 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=35.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~G 131 (647)
.+|||+|||||++|+.||+.|++.| +|+|||++.. |+++.+.|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~--GG~c~n~g 140 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTI--GGTCVNVG 140 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcc--eeeccccC
Confidence 3699999999999999999999999 9999999743 34444444
No 91
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.48 E-value=3.9e-13 Score=147.62 Aligned_cols=34 Identities=44% Similarity=0.586 Sum_probs=31.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.+|||+|||||++|++||+.|++.| +|+|||++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 3599999999999999999999999 999999943
No 92
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.48 E-value=2e-13 Score=148.72 Aligned_cols=46 Identities=30% Similarity=0.435 Sum_probs=37.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
+|||+|||||+||++||..|++.| +|+|+||....-|+++.+.|.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gci 49 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCI 49 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccc
Confidence 599999999999999999999999 9999999863234444444433
No 93
>PRK14727 putative mercuric reductase; Provisional
Probab=99.48 E-value=2.2e-13 Score=149.82 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=36.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG 131 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~G 131 (647)
..|||+|||+|++|+.+|+.|++.| +|+|+|++...|| ++.+.|
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG-~c~n~G 59 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGG-CCVNVG 59 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccee-Eecccc
Confidence 4699999999999999999999999 9999999754443 444444
No 94
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.48 E-value=1.5e-13 Score=150.94 Aligned_cols=42 Identities=31% Similarity=0.532 Sum_probs=35.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGG 132 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Gg 132 (647)
|||+|||||++|++||+.|+++| +|+|+||... |+++.+.|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~--GG~c~n~gc 43 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPL--GGTCVNVGC 43 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcc--cCCeeeecE
Confidence 79999999999999999999999 9999999763 334444443
No 95
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.47 E-value=2.7e-13 Score=149.43 Aligned_cols=33 Identities=39% Similarity=0.615 Sum_probs=31.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
..|||+|||||+||+.||+.|+++| +|+|||+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 3589999999999999999999999 99999974
No 96
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.47 E-value=6.2e-13 Score=157.50 Aligned_cols=123 Identities=17% Similarity=0.084 Sum_probs=74.1
Q ss_pred cchhhhhhccccccc-ceeeeccccccCccccccccccccc-c----cccccccccee-----ecccc-CCCC-------
Q 006397 2 GRKIAMATGVAARTS-NFHFGGIRCKGQSCQQASLVSSLTF-N----GCIQRELSWFL-----RFQRF-NFSH------- 62 (647)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~-----~~~~~-~~~~------- 62 (647)
|++||+|+.+.+... ..++-..++|+.+|....|..|+.. . ..++.+.|... .+... ..|.
T Consensus 27 g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~~~ac~~~~~~gm~~~~~~~~~~~~~d~~~ 106 (985)
T TIGR01372 27 GDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPNTRATTQELYDGLVATSQNRWPSLAFDIGA 106 (985)
T ss_pred CCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCCCCCccceeEEcccCCEEecccCCCccccchhh
Confidence 899999999987653 3445466788889987777767544 2 13555556553 11110 0110
Q ss_pred -----------------Cch-hHhHhhhcc----c-------cc--ccccCCCccccccEEEECCcHHHHHHHHHHHhcC
Q 006397 63 -----------------SPV-SENWKSLRT----V-------PV--LSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHG 111 (647)
Q Consensus 63 -----------------~~~-~~~~~~~~~----~-------~~--~~~~~~~~~~~~DVvIIGgG~AGl~aA~~la~~G 111 (647)
... ...|+.... . .. .....+.....+||+|||||+|||+||+.|++.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~ir~~ag~g~~~~~~~p~~~~~~~~~~dVvIIGaGPAGLaAA~~aar~G 186 (985)
T TIGR01372 107 FNDLFAPLLSAGFYYKTFMWPAAFWWKIYEPFIRRAAGLGVADTETDPDTYDKVNAHCDVLVVGAGPAGLAAALAAARAG 186 (985)
T ss_pred hhhhhhhcccccccccccCCcHHHHHHHhhHHhHHhccCCcCCCCCCCccchhhcccCCEEEECCCHHHHHHHHHHHhCC
Confidence 000 122322110 0 00 0000111124689999999999999999999999
Q ss_pred -CeEEEEecCCCCC
Q 006397 112 -TVAVITKAEPHES 124 (647)
Q Consensus 112 -~V~vlEk~~~~~g 124 (647)
+|+|+|+.+..+|
T Consensus 187 ~~V~liD~~~~~GG 200 (985)
T TIGR01372 187 ARVILVDEQPEAGG 200 (985)
T ss_pred CcEEEEecCCCCCC
Confidence 9999999876554
No 97
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.47 E-value=8.7e-13 Score=131.67 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=99.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.++||+|||||++|++||+.|+++| +|+||||....++++. .+|..... ....
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~gg~~~~~------------------~~~~------ 73 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GGGMLFSK------------------IVVE------ 73 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CCCcceec------------------cccc------
Confidence 3699999999999999999999999 9999999987665432 12211000 0000
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
....++++++|+++....++.+. . ....+...|.+++.+. |+++++++.|.+|+.++
T Consensus 74 -----~~~~~~l~~~gi~~~~~~~g~~~---------------~--~~~el~~~L~~~a~e~-GV~I~~~t~V~dli~~~ 130 (254)
T TIGR00292 74 -----KPAHEILDEFGIRYEDEGDGYVV---------------A--DSAEFISTLASKALQA-GAKIFNGTSVEDLITRD 130 (254)
T ss_pred -----chHHHHHHHCCCCeeeccCceEE---------------e--eHHHHHHHHHHHHHHc-CCEEECCcEEEEEEEeC
Confidence 12245667788887654332111 1 1346788888888875 99999999999999864
Q ss_pred CCCCceEEEEEEEecC---C---CeEEEEEcCeEEECCCccc
Q 006397 246 DGPDAVCHGVDTLNVE---T---QEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~---~---G~~~~i~A~~VVlAtGg~~ 281 (647)
++ .+|.||++.... . .+...++|+.||.|||..+
T Consensus 131 ~~--~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 131 DT--VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred CC--CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 42 268898873210 1 1356899999999999665
No 98
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.46 E-value=4.2e-13 Score=146.95 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=35.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
+|+|||||+||+.||..|++.| +|+|+||+.. |+++.+.|.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~--GG~c~n~gci 44 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL--GGTCLNEGCM 44 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc--cccCCCCccc
Confidence 7999999999999999999999 9999999764 4455555543
No 99
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.46 E-value=1.3e-12 Score=140.42 Aligned_cols=152 Identities=21% Similarity=0.244 Sum_probs=87.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|||+||||||||++||+.|++.| +|+|+||...++..... .+++.... .+... .....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~~~~~~~-----l~~l~--------~~~~~~---- 63 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GGGLSPRA-----LEELI--------PDFDEE---- 63 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cceechhh-----HHHhC--------CCcchh----
Confidence 4699999999999999999999999 99999998876643332 12221100 00000 000000
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
...... +..+... .......... ...+. .....+.+.|.+.+.+. |++++.++.++++..++
T Consensus 64 -------i~~~v~--~~~~~~~-~~~~~~~~~~-----~~~y~--v~R~~fd~~La~~A~~a-Gae~~~~~~~~~~~~~~ 125 (396)
T COG0644 64 -------IERKVT--GARIYFP-GEKVAIEVPV-----GEGYI--VDRAKFDKWLAERAEEA-GAELYPGTRVTGVIRED 125 (396)
T ss_pred -------hheeee--eeEEEec-CCceEEecCC-----CceEE--EEhHHhhHHHHHHHHHc-CCEEEeceEEEEEEEeC
Confidence 000000 0000000 0000000000 00000 01346778888889885 99999999999999886
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
++ .+.++.. +. .+++|+.||.|+|..+.+
T Consensus 126 ~~---~~~~~~~-----~~-~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 126 DG---VVVGVRA-----GD-DEVRAKVVIDADGVNSAL 154 (396)
T ss_pred Cc---EEEEEEc-----CC-EEEEcCEEEECCCcchHH
Confidence 55 4444322 22 579999999999977643
No 100
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.45 E-value=2.1e-13 Score=152.30 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=41.4
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcc
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
.|.|.||++++|++||+||+|||++.++ ..+..|+-.|++||.++.+|+...
T Consensus 260 ~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--------~~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 260 RGYIPTNEDMETNVPGVYAAGDLRPKEL--------RQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCeEEeCCccccCCCCEEEceeccCCCc--------chheeHHhhHHHHHHHHHHHHHhh
Confidence 4779999999999999999999962111 124568888999999999998653
No 101
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.45 E-value=2.6e-13 Score=150.53 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=77.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...|||+|||||+||++||++|++.| +|+|+++. .+|...... +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~-~-------------------------------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTM-G-------------------------------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccC-c--------------------------------
Confidence 44699999999999999999999999 99999764 222110000 0
Q ss_pred HHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
++. -.++ ....+..+...|.+.+++. |++++.+++|+++..+
T Consensus 254 ---------~~~--~~~~--------------------------~~~~~~~l~~~l~~~~~~~-gv~i~~~~~V~~I~~~ 295 (517)
T PRK15317 254 ---------IEN--FISV--------------------------PETEGPKLAAALEEHVKEY-DVDIMNLQRASKLEPA 295 (517)
T ss_pred ---------ccc--cCCC--------------------------CCCCHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEec
Confidence 000 0000 0112556778888888875 8999999999999875
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
++. . .+.+ .+|+ .+.++.||+|||+..+.
T Consensus 296 ~~~----~-~V~~---~~g~--~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 296 AGL----I-EVEL---ANGA--VLKAKTVILATGARWRN 324 (517)
T ss_pred CCe----E-EEEE---CCCC--EEEcCEEEECCCCCcCC
Confidence 321 1 2222 3454 58999999999986543
No 102
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.44 E-value=1.8e-11 Score=133.79 Aligned_cols=152 Identities=24% Similarity=0.273 Sum_probs=87.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC--ccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES--NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g--~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
|||+|||||+||+.+|..+++.| +|+|+|+.....| .+..+.||+.... +..++ ..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~--------l~rEi-da------------ 59 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI--------LVKEI-DA------------ 59 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch--------hhhhh-hc------------
Confidence 69999999999999999999999 9999998743222 2222334432110 00000 00
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+ ...........++.|..... ........+| .......+...+.+.+++.+|++++.+ .|++++.++
T Consensus 60 L---GG~~~~~~d~~~i~~r~ln~-----skgpAV~~~R----aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~ 126 (617)
T TIGR00136 60 L---GGLMGKAADKAGLQFRVLNS-----SKGPAVRATR----AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILED 126 (617)
T ss_pred c---cchHHHHHHhhceeheeccc-----CCCCcccccH----HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEec
Confidence 0 00001111222222221100 0000000011 111245677788888888779999866 788887653
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
++ ++.||.+. +|. .|.|+.||+|||.|.+
T Consensus 127 ~g---~V~GV~t~---~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 127 ND---EIKGVVTQ---DGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred CC---cEEEEEEC---CCC--EEECCEEEEccCcccC
Confidence 45 78888773 354 6999999999999964
No 103
>PRK07846 mycothione reductase; Reviewed
Probab=99.44 E-value=7.8e-13 Score=144.15 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=32.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
+|||+|||||++|..||..+ .| +|+|+|+... |+++.+.|.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~~--GGtC~n~GCi 43 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTF--GGTCLNVGCI 43 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCCC--CCcccCcCcc
Confidence 38999999999999998764 59 9999999654 4555555533
No 104
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.43 E-value=1.5e-12 Score=145.15 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=109.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecC--CCCC--HHHHHH--HHHHh-c----
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC--PSDS--VESHMQ--DTIVA-G---- 154 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~--~~d~--~~~~~~--~~~~~-g---- 154 (647)
.+|||+|||||+.|+++|++|+++| +|+||||.....|.|..+.|-+..... ..+. ....+. ..+.. .
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 4699999999999999999999999 999999998877777777665543211 0110 110000 00000 0
Q ss_pred ---CC--CCCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCc-------ccccccCCccccceeecCCCcHHHHHHHHHH
Q 006397 155 ---AY--LCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------LHLAREGGHSHHRIVHAADMTGREIERALLE 222 (647)
Q Consensus 155 ---~~--~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~-------~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~ 222 (647)
.+ +..+.. .+ ......+..+...|++........ +.....++..++. +...+..+...+..
T Consensus 85 ~~~g~l~~~~~~~--~~-~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~d----g~vdp~rl~~al~~ 157 (546)
T PRK11101 85 EPTDGLFITLPED--DL-AFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPD----GTVDPFRLTAANML 157 (546)
T ss_pred cccCCceEEeccc--cH-HHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecC----cEECHHHHHHHHHH
Confidence 00 000000 00 001112233445565432211000 0000011111111 11235678888888
Q ss_pred HHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 223 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 223 ~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
.+.+. |++++++++|+++..+ ++ ++.||.+.+..+++...|.|+.||+|+|.|+.
T Consensus 158 ~A~~~-Ga~i~~~t~V~~i~~~-~~---~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 158 DAKEH-GAQILTYHEVTGLIRE-GD---TVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HHHhC-CCEEEeccEEEEEEEc-CC---eEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 88875 9999999999999886 45 78899988766676668999999999998874
No 105
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.42 E-value=2.4e-12 Score=128.52 Aligned_cols=183 Identities=16% Similarity=0.205 Sum_probs=98.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|||+|||+||+|..||+.+++.| +.+++||.... |+++.+.|.+..-.-...+ |+ ..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L-GGTcLnvGcIPSKALL~nS---h~----------------yh 97 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL-GGTCLNVGCIPSKALLNNS---HL----------------YH 97 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc-CceeeeccccccHHHhhhh---HH----------------HH
Confidence 4799999999999999999999999 99999997765 4566666655421100000 00 00
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTL 245 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~ 245 (647)
+.. .+.++..|+...... +.+. .+....+..-..+...+...+++ .+|+++.++-- ..+.
T Consensus 98 ~~q-----~~~~~~rGi~vs~~~---~dl~--------~~~~~k~~~vk~Lt~gi~~lfkk-nkV~~~kG~gs---f~~p 157 (506)
T KOG1335|consen 98 EAQ-----HEDFASRGIDVSSVS---LDLQ--------AMMKAKDNAVKQLTGGIENLFKK-NKVTYVKGFGS---FLDP 157 (506)
T ss_pred HHh-----hhHHHhcCcccccee---cCHH--------HHHHHHHHHHHHHhhHHHHHhhh-cCeEEEeeeEe---ecCC
Confidence 000 013455666554210 0000 00001111122333444444444 58888877532 2222
Q ss_pred CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCCC--CCCCCcchhHHHHHH-------cCCeecccccccc
Q 006397 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTT--NPLVATGDGMAMAHR-------AQAVISNMEFVQF 316 (647)
Q Consensus 246 ~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~--~~~~~~Gdg~~~a~~-------aGa~l~~~ef~q~ 316 (647)
+ + |.+ ...+|+..+|.||.+|+|||.--..||.-+ +....+.+|..-... .|+.++++|+...
T Consensus 158 ~----~---V~v-~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV 229 (506)
T KOG1335|consen 158 N----K---VSV-KKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSV 229 (506)
T ss_pred c----e---EEE-eccCCCceEEeeeeEEEEeCCccCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhH
Confidence 2 2 233 224677889999999999997544455211 111222333222211 5777777777654
Q ss_pred c
Q 006397 317 H 317 (647)
Q Consensus 317 ~ 317 (647)
+
T Consensus 230 ~ 230 (506)
T KOG1335|consen 230 W 230 (506)
T ss_pred H
Confidence 4
No 106
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.40 E-value=1.5e-12 Score=142.13 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=32.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCe
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi 133 (647)
+|||+|||+|++|..||.. ..| +|+|+|+... |+++.+.|.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~--GGtC~n~GCi 44 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTF--GGTCLNVGCI 44 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCC--CCeeeccCcc
Confidence 4899999999999998654 469 9999998654 4555555533
No 107
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.38 E-value=1.5e-12 Score=134.56 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=39.0
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHh
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
.|.+.||++++|++|++||+|||+ +. .......|+..|+.||.+++++
T Consensus 252 ~g~i~v~~~~~t~~~~vya~GD~~--~~------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 252 GGYIVTDEGMRTSVPGVFAAGDVR--DK------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCcEEECCCCccCCCCEEEeeccc--Cc------chhhhhhhhhhHHHHHHHHHhh
Confidence 478999999999999999999997 32 1134567888899999998775
No 108
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.37 E-value=2.5e-12 Score=139.86 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC---CeEEEEecCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 121 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~ 121 (647)
+|||||||+||+.||..|++.+ +|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 6999999999999999999874 8999999864
No 109
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.9e-11 Score=117.91 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=59.7
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
...+||.||||||.+||+||-+++..| +|.++|--.+..-++.|--||.+...+ |-|..+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVG-------------------CIPKKL 76 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVG-------------------CIPKKL 76 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecc-------------------cccHHH
Confidence 456899999999999999999999999 999999766544556677777776554 334443
Q ss_pred HHHHHhhHHHHHHHHHcCCcccc
Q 006397 164 RVVCTEGPDRIRELIAIGASFDR 186 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~ 186 (647)
..-+.-..+.+.....+|+..+.
T Consensus 77 MHQAallG~al~da~kyGW~~~e 99 (503)
T KOG4716|consen 77 MHQAALLGEALHDARKYGWNVDE 99 (503)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcc
Confidence 33333344556666677776653
No 110
>PRK10015 oxidoreductase; Provisional
Probab=99.35 E-value=1.2e-11 Score=133.81 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=86.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.+|||||||||+||++||+.|++.| +|+||||...++... . .||.... ...+.++.+ +.....+.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~-~gg~i~~----~~~~~l~~~-------~~~~~~i~- 69 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-M-TGGRLYA----HTLEAIIPG-------FAASAPVE- 69 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-c-cCceeec----ccHHHHccc-------ccccCCcc-
Confidence 4699999999999999999999999 999999988654322 2 2332211 111111100 00000000
Q ss_pred HHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc-c-cceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 166 VCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-H-HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 166 ~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~-~-~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
.......+.+.. .++........... . ....+ ......+...|.+++++ .|++++.++.|+++..
T Consensus 70 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~v~R~~fd~~L~~~a~~-~Gv~i~~~~~V~~i~~ 136 (429)
T PRK10015 70 ---------RKVTREKISFLT-EESAVTLDFHREQPDVPQHASY--TVLRNRLDPWLMEQAEQ-AGAQFIPGVRVDALVR 136 (429)
T ss_pred ---------ccccceeEEEEe-CCCceEeecccCCCCCCCcCce--EeehhHHHHHHHHHHHH-cCCEEECCcEEEEEEE
Confidence 000000000100 00000000000000 0 00000 01134566778888887 4999999999999987
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
+ ++ ++.++.. . + ..+.|+.||+|+|..+.+
T Consensus 137 ~-~~---~v~~v~~---~-~--~~i~A~~VI~AdG~~s~v 166 (429)
T PRK10015 137 E-GN---KVTGVQA---G-D--DILEANVVILADGVNSML 166 (429)
T ss_pred e-CC---EEEEEEe---C-C--eEEECCEEEEccCcchhh
Confidence 6 44 5666642 1 2 269999999999987654
No 111
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.34 E-value=4.9e-12 Score=135.65 Aligned_cols=185 Identities=19% Similarity=0.194 Sum_probs=109.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCcccccc----CCeeeecCCCCC-HHHHHHH---HHHhcCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCPSDS-VESHMQD---TIVAGAYL 157 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~----Ggi~~~~~~~d~-~~~~~~~---~~~~g~~~ 157 (647)
.++||+|||||+.|+.+|+.|+.+| +|+|+|++++.+|.|+.++ ||.......+.+ ..+-+.+ +......+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 6799999999999999999999999 9999999999988887765 455544332222 1111110 11122222
Q ss_pred CCHHHH----------HHHHHhhHHHHHHHHHcCCc----cccCCCCc--c----cccc---cCCccccceeecCCCcHH
Q 006397 158 CDDETV----------RVVCTEGPDRIRELIAIGAS----FDRGEDGN--L----HLAR---EGGHSHHRIVHAADMTGR 214 (647)
Q Consensus 158 ~~~~~~----------~~~~~~~~~~~~~l~~~G~~----~~~~~~g~--~----~~~~---~gg~~~~r~~~~~~~~g~ 214 (647)
+.|... ..+........+.+. |+. -.+.-+.. . .+.. .|+..++. ......
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~la--g~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D----~~vdda 164 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLA--GIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPD----GVVDDA 164 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhh--cccccCCcceecchhhhhhcCcccchhhccceEEEcc----ceechH
Confidence 221100 000111111111111 110 00000000 0 0000 01111111 111234
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+...+...+.++ |.++++.++|+.+..+ + .|.||.+.|..+|+.+.|+|+.||+|||.|...
T Consensus 165 RLv~~~a~~A~~~-Ga~il~~~~v~~~~re-~----~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEH-GAEILTYTRVESLRRE-G----GVWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhc-ccchhhcceeeeeeec-C----CEEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 5666677777775 9999999999999986 3 388999999999999999999999999999854
No 112
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.33 E-value=4.3e-13 Score=139.19 Aligned_cols=187 Identities=17% Similarity=0.182 Sum_probs=111.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccc----cCCeeeec----CCCCCHHHHHHHHH-----
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYA----QGGVSAVL----CPSDSVESHMQDTI----- 151 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a----~Ggi~~~~----~~~d~~~~~~~~~~----- 151 (647)
+.+|||+|||||..|..||+.++-+| +|.|+|++++.+|.|+.+ .||+...- .-+......+.+.+
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999 999999999988877654 57765321 11111111111111
Q ss_pred --HhcCCCCCHHHHHHHHHhhHHHHHHHHH----cCCccccCCCCcccccccCC----------------ccc-cceeec
Q 006397 152 --VAGAYLCDDETVRVVCTEGPDRIRELIA----IGASFDRGEDGNLHLAREGG----------------HSH-HRIVHA 208 (647)
Q Consensus 152 --~~g~~~~~~~~~~~~~~~~~~~~~~l~~----~G~~~~~~~~g~~~~~~~gg----------------~~~-~r~~~~ 208 (647)
+....++.+-.+. ...+.|++. .|+++...-.|.-.+...-. .-. .-..+.
T Consensus 145 lle~APhLs~~lPIm------lPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyD 218 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIM------LPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYD 218 (680)
T ss_pred HhhcCccccCCccee------eehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEec
Confidence 1122222111000 011222221 13333222111110000000 000 001122
Q ss_pred CCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 209 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 209 ~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+...-..+.-.+.-.+..+ |.++.++.+|.+|+.++++ ++.|+.+.|..+|+.+.|+|+.||.|||.++-
T Consensus 219 GQ~nDaRmnl~vAlTA~r~-GA~v~Nh~ev~~Llkd~~~---kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 219 GQHNDARMNLAVALTAARN-GATVLNHVEVVSLLKDKDG---KVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred CCCchHHHHHHHHHHHHhc-chhhhhHHHHHHHhhCCCC---ceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 2223344555555555554 9999999999999998777 89999999999999999999999999999874
No 113
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.33 E-value=3.9e-11 Score=131.52 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=99.3
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHH---------------
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH--------------- 146 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~--------------- 146 (647)
.+.++||+|||||++|+++|++|+++ | +|+|||++....|.|..+.|.+.............
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 100 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQ 100 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHH
Confidence 34568999999999999999999998 8 99999999887888888776443221110100000
Q ss_pred ----HHHHHHhcCCCCCHHH---H-----HHHHHhhHHHHHHHHHcCCc-cccCCCCcccccccCCccccc-eeec--CC
Q 006397 147 ----MQDTIVAGAYLCDDET---V-----RVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHR-IVHA--AD 210 (647)
Q Consensus 147 ----~~~~~~~g~~~~~~~~---~-----~~~~~~~~~~~~~l~~~G~~-~~~~~~g~~~~~~~gg~~~~r-~~~~--~~ 210 (647)
+.+.......-++-.. + ..-.+......+.+.++|++ +.......+ ....+...... .+.+ ..
T Consensus 101 ~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~-~~~~~~~~~~~g~~~~~~g~ 179 (460)
T TIGR03329 101 AVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGEL-ARRTGSARHLEGFYSPVAAS 179 (460)
T ss_pred HHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHH-HHHhCCCcceEEEEeCCCeE
Confidence 1111111000010000 0 00001111223334445543 111100000 00001100101 1111 11
Q ss_pred CcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 211 MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 211 ~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
..+..++..|.+.+++. |++|++++.|+++... + ...|.+ .+| .|.|+.||+|+|+++.
T Consensus 180 i~P~~l~~~L~~~a~~~-Gv~i~~~t~V~~i~~~--~----~~~v~t---~~g---~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 180 VQPGLLVRGLRRVALEL-GVEIHENTPMTGLEEG--Q----PAVVRT---PDG---QVTADKVVLALNAWMA 238 (460)
T ss_pred ECHHHHHHHHHHHHHHc-CCEEECCCeEEEEeeC--C----ceEEEe---CCc---EEECCEEEEccccccc
Confidence 24677889999888875 9999999999998642 2 223332 345 4899999999999864
No 114
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.32 E-value=2.8e-11 Score=128.10 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=100.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCC--HHH-------HHHHHHHhcCCC--
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDS--VES-------HMQDTIVAGAYL-- 157 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~--~~~-------~~~~~~~~g~~~-- 157 (647)
||+|||||++|+++|++|+++| +|+|||++.+.++.|..+.|-+......... ... .+.+........
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 8999999999999999999999 9999999977766676665444333111111 111 111111111100
Q ss_pred ---------C-CHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccc-cCCccccceeecCC---CcHHHHHHHHHHH
Q 006397 158 ---------C-DDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR-EGGHSHHRIVHAAD---MTGREIERALLEA 223 (647)
Q Consensus 158 ---------~-~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~-~gg~~~~r~~~~~~---~~g~~~~~~L~~~ 223 (647)
. ++.... ........+...++++.......+.... .........++... .....+...|.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~ 156 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAE----SLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAE 156 (358)
T ss_dssp EEECEEEEEESSHHHHH----HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred cccccccccccchhhhh----hccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHH
Confidence 0 111111 1122334445555533211100000000 00000001111111 1357899999999
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 224 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 224 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
+++. |++|+++++|++|..+ ++ ++.||.+ .+| .+.||.||+|+|.++..
T Consensus 157 ~~~~-Gv~i~~~~~V~~i~~~-~~---~v~gv~~---~~g---~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 157 AQRA-GVEIRTGTEVTSIDVD-GG---RVTGVRT---SDG---EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHT-T-EEEESEEEEEEEEE-TT---EEEEEEE---TTE---EEEECEEEE--GGGHHH
T ss_pred HHHh-hhhccccccccchhhc-cc---ccccccc---ccc---ccccceeEeccccccee
Confidence 9885 9999999999999987 44 6777765 445 49999999999987754
No 115
>PRK10262 thioredoxin reductase; Provisional
Probab=99.32 E-value=5.9e-12 Score=131.51 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=32.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
+..+||+|||||+||++||+.|+++| +|+++|+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC
Confidence 45689999999999999999999999 9999997643
No 116
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.31 E-value=3.2e-11 Score=136.03 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecC-CCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTL-DGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~-~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+..+...|.+.+.+. |++++++++|++|..++ ++ ++.||.+.+..+++.+.|.|+.||+|+|+|+..
T Consensus 230 dp~rl~~al~~~A~~~-Ga~i~~~~~V~~l~~~~~~g---~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 230 NDSRLNVALACTAALA-GAAVLNYAEVVSLIKDESTG---RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred cHHHHHHHHHHHHHhC-CcEEEeccEEEEEEEecCCC---cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 3667888999999885 99999999999998764 35 788998887667776679999999999999753
No 117
>PRK12831 putative oxidoreductase; Provisional
Probab=99.30 E-value=8.6e-12 Score=136.17 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=41.6
Q ss_pred cceeEeCCC-CcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 436 CGGVRAGLQ-GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~~-~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|.|.||++ ++|++||+||+|||+ +|. ..+..|+..|+.||.++.+|+.
T Consensus 412 ~G~i~vd~~~~~Ts~pgVfAaGD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 412 RGCIVADEETGLTSKEGVFAGGDAV-TGA--------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCcEEECCCCCccCCCCEEEeCCCC-CCc--------hHHHHHHHHHHHHHHHHHHHhc
Confidence 477999998 999999999999997 332 2467899999999999999874
No 118
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.30 E-value=6.1e-11 Score=131.13 Aligned_cols=183 Identities=13% Similarity=0.110 Sum_probs=99.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCcccccc----CCeeeecCCCCCHHHHHHHH-------HHhc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQ----GGVSAVLCPSDSVESHMQDT-------IVAG 154 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~----Ggi~~~~~~~d~~~~~~~~~-------~~~g 154 (647)
.+|||||||||++|+++|+.|+++| +|+||||+++.+|.|..+. ||+..... . . .....+. ....
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~-~-~-~~l~~e~l~er~~l~~~~ 81 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH-Y-E-FRLVREALAEREVLLRMA 81 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhh-c-c-HHHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999 9999999988877776655 34322111 0 0 0111111 1111
Q ss_pred CCCCCHH---------HH-HHHHHhhHHHHHHHHHc-CCc------cccCCCC-cccccccCCccccceeecCCCcHHHH
Q 006397 155 AYLCDDE---------TV-RVVCTEGPDRIRELIAI-GAS------FDRGEDG-NLHLAREGGHSHHRIVHAADMTGREI 216 (647)
Q Consensus 155 ~~~~~~~---------~~-~~~~~~~~~~~~~l~~~-G~~------~~~~~~g-~~~~~~~gg~~~~r~~~~~~~~g~~~ 216 (647)
..++.+- .. ...........+.+... .+. +...... .+.....++.. ...+......+
T Consensus 82 p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~----~~dg~vd~~rl 157 (508)
T PRK12266 82 PHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFE----YSDCWVDDARL 157 (508)
T ss_pred CCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEE----EcCcccCHHHH
Confidence 1111110 00 00000000001110000 000 0000000 00000001100 01111235667
Q ss_pred HHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 217 ERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 217 ~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
...+.+.+.+. |++++++++|+++..+ ++ ..++.+.+..+|+...|.|+.||+|+|.|+.
T Consensus 158 ~~~l~~~A~~~-Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 158 VVLNARDAAER-GAEILTRTRVVSARRE-NG----LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHc-CCEEEcCcEEEEEEEe-CC----EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 77787788775 9999999999999875 33 3467776655676678999999999999874
No 119
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.27 E-value=4.2e-10 Score=120.14 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.+...|.+.+++ .|++++.++.|+++..+ ++ ++.++.. .+|+...+.||.||+|+|.+.
T Consensus 260 rL~~aL~~~l~~-~Gv~I~~g~~V~~v~~~-~~---~V~~v~~---~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFER-LGGRIMPGDEVLGAEFE-GG---RVTAVWT---RNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHh-CCCEEEeCCEEEEEEEe-CC---EEEEEEe---eCCceEEEECCEEEEeCCCcc
Confidence 344667777776 49999999999999876 34 5655542 345556799999999999764
No 120
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.2e-13 Score=130.83 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC-CCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLD-GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~-g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
|..+...|.+.++++ .|+++.-.++++|..... + ...-|.+ .+|. .++++.||++||+.-+
T Consensus 265 Gpkl~~ale~Hv~~Y-~vDimn~qra~~l~~a~~~~---~l~ev~l---~nGa--vLkaktvIlstGArWR 326 (520)
T COG3634 265 GPKLAAALEAHVKQY-DVDVMNLQRASKLEPAAVEG---GLIEVEL---ANGA--VLKARTVILATGARWR 326 (520)
T ss_pred chHHHHHHHHHHhhc-CchhhhhhhhhcceecCCCC---ccEEEEe---cCCc--eeccceEEEecCcchh
Confidence 667888898889886 899999999999986321 2 2333433 4565 6899999999997644
No 121
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.25 E-value=1.5e-11 Score=123.91 Aligned_cols=163 Identities=24% Similarity=0.302 Sum_probs=105.4
Q ss_pred cccccEEEECCcHHHHHHHHHHHhc----C---CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKH----G---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLC 158 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~----G---~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~ 158 (647)
..++||+|||||+|||+||++|.+. + +|+|+||....+|++.. | ..-....+.+++.++...+..++
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--G----aviep~aldEL~P~wke~~apl~ 147 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--G----AVIEPGALDELLPDWKEDGAPLN 147 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec--c----eeeccchhhhhCcchhhcCCccc
Confidence 4579999999999999999999763 3 79999999988887632 1 11122334444444444444333
Q ss_pred CHHHHHHHHHhhHHHHHHHHH-cCCcc----ccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEE
Q 006397 159 DDETVRVVCTEGPDRIRELIA-IGASF----DRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVF 233 (647)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~-~G~~~----~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~ 233 (647)
.+..-+ .+.+|.. +-+++ ..+..|++... =..+++.|-+++++. ||+|+
T Consensus 148 t~vT~d--------~~~fLt~~~~i~vPv~~pm~NhGNYvv~-----------------L~~~v~wLg~kAEe~-GvEiy 201 (621)
T KOG2415|consen 148 TPVTSD--------KFKFLTGKGRISVPVPSPMDNHGNYVVS-----------------LGQLVRWLGEKAEEL-GVEIY 201 (621)
T ss_pred cccccc--------ceeeeccCceeecCCCcccccCCcEEEE-----------------HHHHHHHHHHHHHhh-Cceec
Confidence 222111 1111111 11111 11122222211 136888999999884 99999
Q ss_pred cceEEEEEEecCCCCCceEEEEEEEec---CCCe-------EEEEEcCeEEECCCccccc
Q 006397 234 EHHFAIDLLTTLDGPDAVCHGVDTLNV---ETQE-------VVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 234 ~~~~v~~l~~~~~g~~~~v~Gv~~~~~---~~G~-------~~~i~A~~VVlAtGg~~~~ 283 (647)
.+..+.+++.+++| .|.|+.+.|. ++|. -+.|.|+..|+|-|..+.+
T Consensus 202 Pg~aaSevly~edg---sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 202 PGFAASEVLYDEDG---SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred cccchhheeEcCCC---cEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 99999999999888 8999988663 1221 2579999999999999875
No 122
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.25 E-value=1.3e-10 Score=127.17 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPH 122 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~ 122 (647)
+|||||||+||+++|..|++.+ +|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 6999999999999999999875 79999998753
No 123
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.25 E-value=8.5e-11 Score=121.35 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCC-eEEEEEcCeEEECCCccc
Q 006397 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G-~~~~i~A~~VVlAtGg~~ 281 (647)
..++..+.+++|++|+.++.|++|+.++++ .+++||.+.+..+. ....+.++.||||+|++.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~--~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDG--GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTS--TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccc--cceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 344455556679999999999999885333 38999999986555 356778899999999876
No 124
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.23 E-value=2.3e-10 Score=123.09 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=37.2
Q ss_pred ceeEeCCCCcccccCcccccccccCCC-CCCC-ccCchhhHHHHHHHHHHHHHHHH
Q 006397 437 GGVRAGLQGETNVRGLYVAGEVACTGL-HGAN-RLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~gG~-~Ga~-rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|||.||++++|++|++||+|||+.... .|.. |+ .....|.-.|++||++++.
T Consensus 255 ~gi~vd~~~~ts~~~IyA~GD~a~~~~~~g~~~~~--~~~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 255 NGIVIDEACRTCDPAIFAGGDVAITRLDNGALHRC--ESWENANNQAQIAAAAMLG 308 (396)
T ss_pred CCEEECCCCccCCCCEEEccceEeeeCCCCCEEEE--CcHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999972111 1110 11 1235678889999988864
No 125
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.22 E-value=1.1e-10 Score=126.11 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=103.2
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhc-C--CeEEEEecCCCCCccccccCCeeeecCCCCCHH------HHHHHHHHh-c
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVE------SHMQDTIVA-G 154 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~-G--~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~------~~~~~~~~~-g 154 (647)
...++||+|||||++|+++|++|+++ | +|+||||..+..|.|..+.|.+........... ..+.++... +
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~ 106 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLN 106 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhC
Confidence 34579999999999999999999995 8 799999998877777777666543322111110 111111111 1
Q ss_pred CC--C---------CCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc--------ccceeec---CCCc
Q 006397 155 AY--L---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS--------HHRIVHA---ADMT 212 (647)
Q Consensus 155 ~~--~---------~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~--------~~r~~~~---~~~~ 212 (647)
.. + .+++... .....++.+...|++........+. ..+.... ....++. ....
T Consensus 107 ~~~~~~~~G~l~~a~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~el~-~~~P~l~~~~~~~~~~~ga~~~~~~g~v~ 181 (407)
T TIGR01373 107 YNVMFSQRGVLNLCHSTADMD----DGARRVNAMRLNGVDAELLSPEQVR-RVIPILDFSPDARFPVVGGLLQRRGGTAR 181 (407)
T ss_pred CCcCEEeccEEEEeCCHHHHH----HHHHHHHHHHHcCCCeEEeCHHHHH-HhCCCCccccccccceeEEEEcCCCCcCC
Confidence 00 0 0111111 1112233344556654321110100 0000000 0011111 1122
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
...+...|.+.+.+. |++++++++|+++..++++ .+.+|.+ .+| .+.|+.||+|+|++..
T Consensus 182 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~---~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 182 HDAVAWGYARGADRR-GVDIIQNCEVTGFIRRDGG---RVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCC---cEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 455777788888875 9999999999999764344 5656644 345 5899999999999874
No 126
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.21 E-value=5e-11 Score=131.91 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=99.7
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeec---CCCC--CHHHHH---HHHHHhcCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL---CPSD--SVESHM---QDTIVAGAY 156 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~---~~~d--~~~~~~---~~~~~~g~~ 156 (647)
..++||+|||||++|+++|+.|+++| +|+||||+.+.+|.|+.+.+-+.... ...+ ...+-+ ...+.....
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~ 83 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPH 83 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCc
Confidence 44699999999999999999999999 99999999988777776654332111 0000 000000 011111211
Q ss_pred CCCHHH---------HHHHHHhhHHHHHHHHHcCCccccCCCCc-cccc----ccCC-ccccceee--cCCCcHHHHHHH
Q 006397 157 LCDDET---------VRVVCTEGPDRIRELIAIGASFDRGEDGN-LHLA----REGG-HSHHRIVH--AADMTGREIERA 219 (647)
Q Consensus 157 ~~~~~~---------~~~~~~~~~~~~~~l~~~G~~~~~~~~g~-~~~~----~~gg-~~~~r~~~--~~~~~g~~~~~~ 219 (647)
+..+.. ...+.. ...+..+..++..- ..+... +... ...- ........ ........+...
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~--~~g~~ly~~~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~ 160 (502)
T PRK13369 84 IIWPMRFVLPHSPEDRPAWLV--RLGLFLYDHLGGRK-RLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVL 160 (502)
T ss_pred cccccceEEecccccccHHHH--HHHHHHHHhccCCC-CCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHH
Confidence 111100 000000 00001111111100 000000 0000 0000 00000111 111235677778
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+...+.+. |++++++++|+++..+ ++ ..+|.+.+.. |+...|.|+.||+|+|.|+.
T Consensus 161 l~~~a~~~-Ga~i~~~~~V~~i~~~-~~----~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 161 NALDAAER-GATILTRTRCVSARRE-GG----LWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHC-CCEEecCcEEEEEEEc-CC----EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 88888875 9999999999999875 33 3467666543 66678999999999999874
No 127
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.21 E-value=2.1e-09 Score=110.88 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
-..++..+.+.+.+. |++|+++++|.++..++ + .+.+|.. .+|+ +|.|+.||+|.|-.++.
T Consensus 172 l~~vvkni~~~l~~~-G~ei~f~t~VeDi~~~~-~---~~~~v~~---~~g~--~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 172 LPKVVKNIREYLESL-GGEIRFNTEVEDIEIED-N---EVLGVKL---TKGE--EIEADYVVLAPGRSGRD 232 (486)
T ss_pred hHHHHHHHHHHHHhc-CcEEEeeeEEEEEEecC-C---ceEEEEc---cCCc--EEecCEEEEccCcchHH
Confidence 356778888889885 99999999999999874 3 4666654 3454 69999999999976653
No 128
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.20 E-value=3.8e-11 Score=130.91 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=40.1
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.|+|.||++++|++||+||+||++ +|. ..+..|+..|+.||.++.+|+
T Consensus 402 ~G~i~vd~~~~Ts~~~VfA~GD~~-~g~--------~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 402 RGTIVVDEDQRTSIPGVFAGGDII-LGA--------ATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCeEEeCCCCccCCCCEEEecCCC-CCc--------HHHHHHHHHHHHHHHHHHhhC
Confidence 378999999999999999999997 332 356788999999999987763
No 129
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.19 E-value=1e-09 Score=117.70 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEec---CCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---ETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+.+. |++++.. .|+++..++ + .+ .+.+.+. .+|+..++.|+.||.|+|..+.+
T Consensus 91 r~~fd~~L~~~a~~~-G~~v~~~-~v~~v~~~~-~---~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 91 REVFDSYLRERAQKA-GAELIHG-LFLKLERDR-D---GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred HHHHHHHHHHHHHhC-CCEEEee-EEEEEEEcC-C---eE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 346777888888774 9999866 589987653 3 23 3444321 12344579999999999988754
No 130
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.18 E-value=4.5e-10 Score=123.18 Aligned_cols=153 Identities=24% Similarity=0.305 Sum_probs=87.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC-CCCCcc-ccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNT-NYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~-~~~g~s-~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+|||||||||+||+.||+.|++.| +|+|||+.. ..++-+ ..+.||+.. ..++.+ +..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak--------g~lvrE-ida---------- 63 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK--------GHLVRE-IDA---------- 63 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh--------hHHHHH-HHh----------
Confidence 3599999999999999999999999 999999874 222111 112222210 000110 000
Q ss_pred HHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 164 RVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
............++.+..... .........+ .......+...+.+.+.+.+|++++ ...|++++.
T Consensus 64 -----lGg~~g~~~d~~giq~r~ln~-----skGpAV~s~R----aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~ 128 (618)
T PRK05192 64 -----LGGEMGKAIDKTGIQFRMLNT-----SKGPAVRALR----AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV 128 (618)
T ss_pred -----cCCHHHHHHhhccCceeeccc-----CCCCceeCcH----HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe
Confidence 000011222333443321110 0000000000 0112345677787888776799986 457899987
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+ ++ +|.||.+. +|. .|.|+.||+|||.|.+
T Consensus 129 e-~g---rV~GV~t~---dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 129 E-NG---RVVGVVTQ---DGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred c-CC---EEEEEEEC---CCC--EEECCEEEEeeCcchh
Confidence 6 45 78898773 353 6999999999998764
No 131
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.18 E-value=6.8e-10 Score=120.17 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=38.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCCee
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVS 134 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~-~~~g~s~~a~Ggi~ 134 (647)
+||+|||||++|+++|++|++.| +|+||||+. ...+.|..+.|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as~~~~g~~~ 49 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETSFANGGQLS 49 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcccccCCEEe
Confidence 59999999999999999999999 999999997 45566666655443
No 132
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.18 E-value=4.7e-10 Score=118.25 Aligned_cols=184 Identities=19% Similarity=0.139 Sum_probs=101.8
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCCCC-ccccccCCeeeecCCCCCHHHHHHHHHHhcCCCC----
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES-NTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLC---- 158 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~~g-~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~---- 158 (647)
..|||+|||||+.|+++|++|++.+ +|+||||....+. +|..++|-+.+... .++...-.+....+....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~--y~p~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLY--YTPGSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceecccc--CCCcchhhHHHHHHHHHHHHHH
Confidence 3689999999999999999999987 8999999876553 44444444433221 111111111111111000
Q ss_pred ---------CHHHH----HHHHHhhHHHHHHHHHcCCc-cccCCCCcccccccC-----CccccceeecCCCcHHHHHHH
Q 006397 159 ---------DDETV----RVVCTEGPDRIRELIAIGAS-FDRGEDGNLHLAREG-----GHSHHRIVHAADMTGREIERA 219 (647)
Q Consensus 159 ---------~~~~~----~~~~~~~~~~~~~l~~~G~~-~~~~~~g~~~~~~~g-----g~~~~r~~~~~~~~g~~~~~~ 219 (647)
.+.++ ..-.+.....++.+...|+. +... +..-....+. ....-............++..
T Consensus 80 kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 80 KQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeec-CHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 00000 00011112223333444554 1111 1000000000 000000001122235678899
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
|.+.+.++ |+++..+++|++|..+++| +.+.++.+|+.. ++|+.||+|+|+++-
T Consensus 159 l~e~a~~~-g~~i~ln~eV~~i~~~~dg-------~~~~~~~~g~~~-~~ak~Vin~AGl~Ad 212 (429)
T COG0579 159 LAEEAQAN-GVELRLNTEVTGIEKQSDG-------VFVLNTSNGEET-LEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHc-CCEEEecCeeeEEEEeCCc-------eEEEEecCCcEE-EEeeEEEECCchhHH
Confidence 99999986 9999999999999987543 455555677655 999999999998873
No 133
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.17 E-value=1.4e-09 Score=124.08 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=34.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
...+|+|||||+|||++|..|++.| +|+|+|+....+|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~ 365 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGL 365 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCce
Confidence 3579999999999999999999999 99999998766553
No 134
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.17 E-value=5.3e-10 Score=121.28 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
....+...|.+.+.+. |++|+++++|+++..+ ++ .+.+|.. .++ .+.|+.||+|+|.++.
T Consensus 199 ~p~~~~~~l~~~~~~~-G~~i~~~~~V~~i~~~-~~---~~~~v~t---~~~---~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 199 DCQLFTQRLAAMAEQL-GVKFRFNTPVDGLLVE-GG---RITGVQT---GGG---VITADAYVVALGSYST 258 (416)
T ss_pred CHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEec-CC---EEEEEEe---CCc---EEeCCEEEECCCcchH
Confidence 3567888888888874 9999999999999876 34 5555543 334 5899999999998864
No 135
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.16 E-value=8.2e-11 Score=117.78 Aligned_cols=160 Identities=24% Similarity=0.311 Sum_probs=99.2
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
.+..+||||||+|.+|.+.|+.|++.| +|.||||+-. .++..+.+.+..|.++
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~--------------------EPdRivGEllQPGG~~------ 95 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS--------------------EPDRIVGELLQPGGYL------ 95 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccc--------------------cchHHHHHhcCcchhH------
Confidence 456799999999999999999999999 9999999753 1233333333333221
Q ss_pred HHHHHh-hHHHHHHHH---HcCCccccCCCCccc---c--cccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEc
Q 006397 164 RVVCTE-GPDRIRELI---AIGASFDRGEDGNLH---L--AREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFE 234 (647)
Q Consensus 164 ~~~~~~-~~~~~~~l~---~~G~~~~~~~~g~~~---~--~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~ 234 (647)
.+.+- ..+.++.++ -.|..... +|+-. + ..+......|..|. -.++..|.+++...+||++.+
T Consensus 96 -~L~~LGl~Dcve~IDAQ~v~Gy~ifk--~gk~v~~pyP~~~f~~d~~GrsFhn-----GRFvq~lR~ka~slpNV~~ee 167 (509)
T KOG1298|consen 96 -ALSKLGLEDCVEGIDAQRVTGYAIFK--DGKEVDLPYPLKNFPSDPSGRSFHN-----GRFVQRLRKKAASLPNVRLEE 167 (509)
T ss_pred -HHHHhCHHHHhhcccceEeeeeEEEe--CCceeeccCCCcCCCCCcccceeec-----cHHHHHHHHHHhcCCCeEEee
Confidence 11100 011122221 12222211 11110 0 00111111111111 247788999888889999988
Q ss_pred ceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006397 235 HHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 235 ~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 284 (647)
+ .|.+|+.+ +| .|.||.+.+.. |+..+..|...|+|.|.|+++-
T Consensus 168 G-tV~sLlee-~g---vvkGV~yk~k~-gee~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 168 G-TVKSLLEE-EG---VVKGVTYKNKE-GEEVEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred e-eHHHHHhc-cC---eEEeEEEecCC-CceEEEecceEEEecchhHHHH
Confidence 8 58888876 56 89999998754 5558899999999999999753
No 136
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.16 E-value=1.5e-09 Score=118.89 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
....+...|.+.+++. |++|+++++|+++..++++ .+ .+.+.+..+|+..+++|+.||+|+|+++.
T Consensus 176 dp~~l~~aL~~~a~~~-Gv~i~~~t~V~~i~~~~~~---~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 176 DFGALTKQLLGYLVQN-GTTIRFGHEVRNLKRQSDG---SW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCC---eE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence 4678899999999875 9999999999999875443 23 23443444554456899999999999874
No 137
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.16 E-value=3.1e-10 Score=123.09 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=86.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
..|||||||||+||++||+.|+++| +|+||||...++... ..||.... ...+..+.+...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~--~~gg~l~~----~~~e~l~~~~~~------------- 64 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN--VTGGRLYA----HSLEHIIPGFAD------------- 64 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc--cccceech----hhHHHHhhhhhh-------------
Confidence 3599999999999999999999999 999999987654322 12332211 111111111000
Q ss_pred HHHhhHHHHHHH-HHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 166 VCTEGPDRIREL-IAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 166 ~~~~~~~~~~~l-~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
..+ ++.. ....+.+. ..++.........................+...|.+.+++ .|++++.++.|+++..+
T Consensus 65 ---~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~-~Gv~i~~~~~V~~i~~~ 137 (428)
T PRK10157 65 ---SAP--VERLITHEKLAFM-TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE-AGAQLITGIRVDNLVQR 137 (428)
T ss_pred ---cCc--ccceeeeeeEEEE-cCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEe
Confidence 000 0000 00000110 0111110000000000000000001234677788888887 49999999999999876
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
++ ++.++.. +|+ .+.|+.||+|+|..+.
T Consensus 138 -~g---~v~~v~~----~g~--~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 138 -DG---KVVGVEA----DGD--VIEAKTVILADGVNSI 165 (428)
T ss_pred -CC---EEEEEEc----CCc--EEECCEEEEEeCCCHH
Confidence 44 5655431 343 5899999999997654
No 138
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.16 E-value=2e-10 Score=132.51 Aligned_cols=47 Identities=28% Similarity=0.481 Sum_probs=39.1
Q ss_pred ceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
|.|.||+.++|++||+||+||++ +|. ..+..|+..|+.||.+++...
T Consensus 795 G~I~VDetlqTs~pgVFAaGD~a-~Gp--------~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 795 GWPVVDANGETSLTNVYMIGDVQ-RGP--------STIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCEEeCCCcccCCCCEEEEeccc-cCc--------hHHHHHHHHHHHHHHHHhhhc
Confidence 67899999999999999999997 332 256788999999999987654
No 139
>PRK06126 hypothetical protein; Provisional
Probab=99.15 E-value=1.3e-09 Score=122.33 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.++++|++++.|+++..+++ .|. +.+.+..+|+..+++||.||.|+|+.+.+
T Consensus 126 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~----~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 126 KYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD----GVT-ATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHHHHHHHHhCCCceEEeccEEEEEEECCC----eEE-EEEEECCCCcEEEEEEEEEEecCCcchHH
Confidence 456677888887666999999999999987643 344 55556566776789999999999998853
No 140
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.15 E-value=2.4e-09 Score=115.03 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=35.9
Q ss_pred ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 447 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 447 T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
+.-+|+..+||++ |+ .+.+.|.++..|+..|++||+.+++.+.
T Consensus 267 ~~~~~~llvGDAA--g~--v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 267 RVVGRVALVGDAA--GY--VTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred EECCCEEEEEcCC--CC--CCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 4458999999998 33 2678899999999999999999988764
No 141
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.14 E-value=1.2e-09 Score=119.64 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
...+...|.+.+++..|++++++++|+++..++++ .+ .+.+.+..+|+..+|.|+.||+|+|+++.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg---~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG---SW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC---CE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 46788899999887534999999999999875444 33 24443334564446899999999999874
No 142
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.14 E-value=1.5e-10 Score=112.21 Aligned_cols=31 Identities=48% Similarity=0.743 Sum_probs=28.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
||+|||||+||+.||.+|++.+ +|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 7999999999999999999999 999997754
No 143
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.12 E-value=2.8e-10 Score=124.63 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=41.4
Q ss_pred cceeEeCC-CCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|+|.||. .++|++||+||+||++ +|. .....|+..|+.||.++.+++.+
T Consensus 403 ~g~i~vd~~~~~Ts~~~VfA~GD~~-~~~--------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 403 WGTIIADDETGRTSLPGVFAGGDIV-TGA--------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCEEeCCCCCccCCCCEEEeCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899998 7899999999999997 331 24567899999999999988754
No 144
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.12 E-value=2.8e-09 Score=126.01 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
...+|+|||||+|||+||+.|+++| +|+|+|+....+|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG 467 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGG 467 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcc
Confidence 3579999999999999999999999 9999999876654
No 145
>PLN02697 lycopene epsilon cyclase
Probab=99.12 E-value=7.3e-09 Score=113.77 Aligned_cols=142 Identities=26% Similarity=0.289 Sum_probs=79.7
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
...+||+|||||+||+++|+.|++.| +|+|||+......+ .|+. ...+.+. ++ .+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-----~GvW---------~~~l~~l-----gl--~~~-- 162 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-----YGVW---------EDEFKDL-----GL--EDC-- 162 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-----cccc---------hhHHHhc-----Cc--HHH--
Confidence 34699999999999999999999999 99999986432211 1111 1111100 00 000
Q ss_pred HHHHhhHHHHHHHHHc-CCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEe
Q 006397 165 VVCTEGPDRIRELIAI-GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLT 243 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~-G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~ 243 (647)
+. ..| +..+.. +++.... .+..+ .......+...|.+++.+ .|+++ .++.|+++..
T Consensus 163 ---------i~--~~w~~~~v~~-~~~~~~~---~~~~Y------g~V~R~~L~~~Ll~~a~~-~GV~~-~~~~V~~I~~ 219 (529)
T PLN02697 163 ---------IE--HVWRDTIVYL-DDDKPIM---IGRAY------GRVSRTLLHEELLRRCVE-SGVSY-LSSKVDRITE 219 (529)
T ss_pred ---------HH--hhcCCcEEEe-cCCceee---ccCcc------cEEcHHHHHHHHHHHHHh-cCCEE-EeeEEEEEEE
Confidence 00 001 111110 1111100 00000 011245677888888877 49998 5678999877
Q ss_pred cCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 244 TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 244 ~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
++++ +..+.. .+|. ++.|+.||.|+|..+.
T Consensus 220 ~~~~----~~vv~~---~dG~--~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 220 ASDG----LRLVAC---EDGR--VIPCRLATVASGAASG 249 (529)
T ss_pred cCCc----EEEEEE---cCCc--EEECCEEEECCCcChh
Confidence 5332 322222 2343 6899999999998884
No 146
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.12 E-value=2e-09 Score=115.07 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.5
Q ss_pred ceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHH
Q 006397 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
+||.||++++|++|++||+|||+ .+.|. .++ .+..|...|+.||++++.
T Consensus 253 ~gi~vd~~l~ts~~~VyA~GD~a--~~~~~-~~~--~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 253 RGIVVDSYLQTSAPDIYALGDCA--EINGQ-VLP--FLQPIQLSAMALAKNLLG 301 (377)
T ss_pred CCEEECCCcccCCCCEEEeeecE--eECCc-eee--hHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999997 33332 111 245577788888888764
No 147
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.11 E-value=7.7e-10 Score=121.50 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=41.1
Q ss_pred cceeEeC-CCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 436 CGGVRAG-LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD-~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|.|++| ++++|++||+||+|||+ +|. ..+..|+..|+.||.++.+|+..
T Consensus 416 ~g~i~vd~~~~~Ts~~gVfa~GD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 416 RGRVAAPDNAYQTSNPKVFAAGDMR-RGQ--------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEeCCCcccCCCCCEEEccccC-CCc--------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 4778998 78999999999999998 332 23567899999999999998854
No 148
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.11 E-value=1.3e-09 Score=113.52 Aligned_cols=150 Identities=28% Similarity=0.351 Sum_probs=84.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEE-ecCCCCCcc-ccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVIT-KAEPHESNT-NYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlE-k~~~~~g~s-~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
||+|||||.||+.||+.+|+.| +|+|+. +....+.-+ .-+-||+ ...+ +++.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~---------~kg~---------------L~~Ei 56 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGI---------AKGH---------------LVREI 56 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEEST---------THHH---------------HHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccc---------cccc---------------hhHHH
Confidence 8999999999999999999999 999993 322222111 1111222 0111 11111
Q ss_pred HHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006397 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
-..........+..++.+......+- ..++. .|. ..| ...+...+.+.+++.++++|+. .+|++|+.+ +
T Consensus 57 dalgg~m~~~aD~~~i~~~~lN~skG----pav~a-~r~--qvD--r~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e-~ 125 (392)
T PF01134_consen 57 DALGGLMGRAADETGIHFRMLNRSKG----PAVHA-LRA--QVD--RDKYSRAMREKLESHPNLTIIQ-GEVTDLIVE-N 125 (392)
T ss_dssp HHTT-SHHHHHHHHEEEEEEESTTS-----GGCTE-EEE--EE---HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEEC-T
T ss_pred hhhhhHHHHHHhHhhhhhhcccccCC----CCccc-hHh--hcc--HHHHHHHHHHHHhcCCCeEEEE-cccceEEec-C
Confidence 11111222333444554432211000 00110 111 112 3457777888888878999975 589999987 5
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+ +|.||.+ .+|+ .|.|+.||+|||.|.+
T Consensus 126 ~---~v~GV~~---~~g~--~~~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 126 G---KVKGVVT---KDGE--EIEADAVVLATGTFLN 153 (392)
T ss_dssp T---EEEEEEE---TTSE--EEEECEEEE-TTTGBT
T ss_pred C---eEEEEEe---CCCC--EEecCEEEEecccccC
Confidence 5 8999877 4576 6999999999998654
No 149
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.11 E-value=1.5e-09 Score=116.61 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=94.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecC-CCCCccccccCCeeeecC-CCCC-HHHH-------HHHHHHh-
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAE-PHESNTNYAQGGVSAVLC-PSDS-VESH-------MQDTIVA- 153 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~-~~~g~s~~a~Ggi~~~~~-~~d~-~~~~-------~~~~~~~- 153 (647)
.+||+|||||++|+++|++|+++ | +|+||||.. ...++|..+.|.+..... ...+ ...+ +.+....
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 38999999999999999999999 9 999999986 444555555443332211 1111 0110 1111111
Q ss_pred cCCC---------CCHHHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCcc-ccceeecC--CCcHHHHHHHHH
Q 006397 154 GAYL---------CDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS-HHRIVHAA--DMTGREIERALL 221 (647)
Q Consensus 154 g~~~---------~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~-~~r~~~~~--~~~g~~~~~~L~ 221 (647)
+..+ .+.+... ......+++...|+++.......+. ..+.... ......+. ......+...|.
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~el~-~~~P~l~~~~al~~p~~g~vd~~~l~~aL~ 156 (393)
T PRK11728 82 GIPYEECGKLLVATSELELE----RMEALYERARANGIEVERLDAEELR-EREPNIRGLGAIFVPSTGIVDYRAVAEAMA 156 (393)
T ss_pred CCCcccCCEEEEEcCHHHHH----HHHHHHHHHHHCCCcEEEeCHHHHH-HhCCCccccceEEcCCceEECHHHHHHHHH
Confidence 0000 0111110 1111223333445443211100000 0000000 00011111 112567888999
Q ss_pred HHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 222 EAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 222 ~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+.+++. |+++++++.|+++..+ ++ .+ .|.. .+| .+.|+.||+|+|.++.
T Consensus 157 ~~~~~~-Gv~i~~~~~V~~i~~~-~~---~~-~V~~---~~g---~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 157 ELIQAR-GGEIRLGAEVTALDEH-AN---GV-VVRT---TQG---EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHhC-CCEEEcCCEEEEEEec-CC---eE-EEEE---CCC---EEEeCEEEECCCcchH
Confidence 988874 9999999999998765 33 23 3332 344 5899999999998863
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.11 E-value=8.9e-10 Score=117.30 Aligned_cols=46 Identities=28% Similarity=0.532 Sum_probs=40.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCee
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVS 134 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~ 134 (647)
+||+|||||++|+++|++|+++| +|+|||+.....|+|..+.|.+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~ 47 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVW 47 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEE
Confidence 69999999999999999999999 99999999877777777766554
No 151
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.11 E-value=2.4e-09 Score=116.57 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
....+...|.+.+.+..|++++++++|++|..++++ .+. +.+.++.+++..++.|+.||+|+|+++.
T Consensus 182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 356788889888865459999999999999875333 222 3332334453336899999999999985
No 152
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.10 E-value=4.1e-10 Score=130.54 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=37.2
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHH
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
.|||.||++++|++|++||+|||+ +.++ .+-| ....|.-.|++|+.+++.
T Consensus 260 ~G~I~VD~~l~Ts~p~IYAiGD~a--~~~~--~~~g-l~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 260 RGGIVINDSCQTSDPDIYAIGECA--SWNN--RVFG-LVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CCcEEECCCCcCCCCCEEEeecce--eEcC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999998 3332 1111 235677778888887764
No 153
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.10 E-value=9.8e-10 Score=117.67 Aligned_cols=181 Identities=16% Similarity=0.157 Sum_probs=92.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCC-CccccccCCeeeecCCCCCHHH-------HHHHHHHh-cCCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE-SNTNYAQGGVSAVLCPSDSVES-------HMQDTIVA-GAYLC 158 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~-g~s~~a~Ggi~~~~~~~d~~~~-------~~~~~~~~-g~~~~ 158 (647)
|||+|||||++|+++|++|+++| +|+|||+..... +.+....+++.......+.... ++.++... +....
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 69999999999999999999999 999999987542 2222222233221111111111 11111111 10000
Q ss_pred CHHHHHHHH----HhhHHHHHHHHHcCCccccCCCCcccccccCCcc---ccceee-c--CCCcHHHHHHHHHHHHHcCC
Q 006397 159 DDETVRVVC----TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---HHRIVH-A--ADMTGREIERALLEAVVSDP 228 (647)
Q Consensus 159 ~~~~~~~~~----~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~---~~r~~~-~--~~~~g~~~~~~L~~~~~~~~ 228 (647)
.+.-...+. +......+.+...|++........+. ..+.... ....++ + .......+...|.+.+++.
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~-~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~- 158 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLK-QRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAH- 158 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHH-HhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHc-
Confidence 000000000 11122234445556543211110000 0000000 000111 1 1113557788888888774
Q ss_pred CcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 229 NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 229 gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
|++++.+++|+++..+ ++ .+ .|.+ .++ .|.|+.||+|+|++..
T Consensus 159 g~~~~~~~~V~~i~~~-~~---~~-~v~~---~~~---~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 159 GATVRDGTKVVEIEPT-EL---LV-TVKT---TKG---SYQANKLVVTAGAWTS 201 (380)
T ss_pred CCEEECCCeEEEEEec-CC---eE-EEEe---CCC---EEEeCEEEEecCcchH
Confidence 9999999999999875 33 33 2332 334 5899999999998864
No 154
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.08 E-value=3.1e-09 Score=121.75 Aligned_cols=51 Identities=31% Similarity=0.543 Sum_probs=42.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC-CCCCccccccCCeeeecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE-PHESNTNYAQGGVSAVLC 138 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~-~~~g~s~~a~Ggi~~~~~ 138 (647)
.+||+|||||++|+++|++|+++| +|+|||+.. +..|+|..+.|.+.....
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~ 312 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLS 312 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccC
Confidence 479999999999999999999999 999999985 556777776665554443
No 155
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.08 E-value=9.5e-10 Score=117.57 Aligned_cols=182 Identities=13% Similarity=0.066 Sum_probs=92.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCC--CccccccCCeeeecCCCCCHH-------HHHHHHHHh-cCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE--SNTNYAQGGVSAVLCPSDSVE-------SHMQDTIVA-GAY 156 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~--g~s~~a~Ggi~~~~~~~d~~~-------~~~~~~~~~-g~~ 156 (647)
++||+|||||++|+++|++|+++| +|+||||+.... +++..+.+.+........... ..+.+.... +..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~ 82 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGEP 82 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCCc
Confidence 589999999999999999999999 999999987653 222222121221111111110 111111111 100
Q ss_pred CCCHHHHHHH----HHhhHHHHHHHHHcCCccccCCCCcccccccCC---ccccce-eecC--CCcHHHHHHHHHHHHHc
Q 006397 157 LCDDETVRVV----CTEGPDRIRELIAIGASFDRGEDGNLHLAREGG---HSHHRI-VHAA--DMTGREIERALLEAVVS 226 (647)
Q Consensus 157 ~~~~~~~~~~----~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg---~~~~r~-~~~~--~~~g~~~~~~L~~~~~~ 226 (647)
.....-...+ .+......+.+++.|++........+. ..+.. ...... +.+. ......+...+.+.+.+
T Consensus 83 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~-~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~ 161 (376)
T PRK11259 83 LFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIR-RRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLARE 161 (376)
T ss_pred cEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHH-HhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence 0000000000 001112233445566543211100000 00000 000001 1111 12345677778888776
Q ss_pred CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 227 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 227 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
. |++++.+++|+++..+ ++ .+ .+.. .+| .+.|+.||+|+|+++.
T Consensus 162 ~-gv~i~~~~~v~~i~~~-~~---~~-~v~~---~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 162 A-GAELLFNEPVTAIEAD-GD---GV-TVTT---ADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred C-CCEEECCCEEEEEEee-CC---eE-EEEe---CCC---EEEeeEEEEecCcchh
Confidence 4 9999999999999875 33 22 2322 345 5899999999998864
No 156
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.08 E-value=9.4e-11 Score=126.99 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=35.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 168 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 168 (647)
||||||||+||++||+.+|+.| +|+|||+....||.. ..+++....... ...... .-+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~--t~~~~~~~~~~~-~~~~~~----------------~gi~- 60 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMA--TSGGVSPFDGNH-DEDQVI----------------GGIF- 60 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGG--GGSSS-EETTEE-HHHHHH----------------HHHH-
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcc--eECCcCChhhcc-hhhccC----------------CCHH-
Confidence 8999999999999999999999 999999999877644 223333222211 000000 0000
Q ss_pred hhHHHHHHHHHcCCc-cccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 169 EGPDRIRELIAIGAS-FDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 169 ~~~~~~~~l~~~G~~-~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
.+..+.+...+.. .. ...+... . .......+...|.+.+.+ .|++++.++.|++++.+ ++
T Consensus 61 --~e~~~~~~~~~~~~~~-~~~~~~~----------~----~~~~~~~~~~~l~~~l~e-~gv~v~~~t~v~~v~~~-~~ 121 (428)
T PF12831_consen 61 --REFLNRLRARGGYPQE-DRYGWVS----------N----VPFDPEVFKAVLDEMLAE-AGVEVLLGTRVVDVIRD-GG 121 (428)
T ss_dssp --HHHHHST-----------------------------------------------------------------------
T ss_pred --HHHHHHHhhhcccccc-ccccccc----------c----cccccccccccccccccc-ccccccccccccccccc-cc
Confidence 0111111111100 00 0000000 0 000011233344444544 59999999999999997 55
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 279 (647)
+|.||.+.+.. | ..+|+|+.||.|||-
T Consensus 122 ---~i~~V~~~~~~-g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 122 ---RITGVIVETKS-G-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------
T ss_pred ---ccccccccccc-c-ccccccccccccccc
Confidence 89999987643 5 568999999999993
No 157
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.07 E-value=1.9e-09 Score=125.09 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=34.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
...||+|||||+||++||+.|++.| +|+|+|+.+..+|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 3579999999999999999999999 9999999876543
No 158
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.07 E-value=3.6e-10 Score=132.24 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=40.6
Q ss_pred cceeEeCC-CCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|.|.||+ .++|++||+||+|||+ .| .....+|+-.|+.||.++.+|+.
T Consensus 578 ~G~I~vd~~~~~Ts~pgVFAaGD~~-~G--------~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 578 WGTIEVEKGSQRTSIKGVYSGGDAA-RG--------GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCEEECCCCCccCCCCEEEEEcCC-CC--------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789996 4899999999999997 32 23567899999999999998864
No 159
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.07 E-value=3.4e-09 Score=114.91 Aligned_cols=62 Identities=23% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+.+.|.+.+.+.+++++++++.++++..++++ + .|.+.+ +++..+++||.||.|+|..+.+
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~----~-~v~~~~--~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA----A-TVTLEI--EGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe----e-EEEEcc--CCcceEEeeeEEEEeCCCCchh
Confidence 467778888877668999999999999776332 2 233322 3333479999999999988854
No 160
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.05 E-value=7.6e-09 Score=120.10 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=40.9
Q ss_pred ceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
|.|.||++++|++||+||+|||+ +| ...+..|+..|+.||.++.+|+.
T Consensus 703 G~i~vd~~~~Ts~~gVfA~GD~~-~g--------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 703 GTIVVDEEMQSSIPGIYAGGDIV-RG--------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCEEeCCCCCCCCCCEEEeCCcc-CC--------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 67889999999999999999998 33 23467899999999999998874
No 161
>PRK06185 hypothetical protein; Provisional
Probab=99.05 E-value=2.6e-09 Score=115.48 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+|++++.++.|+++..+ ++ .+.+|.+.. .+|+ .+++|+.||.|+|+++.+
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~---~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~v 171 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GG---RVTGVRART-PDGP-GEIRADLVVGADGRHSRV 171 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CC---EEEEEEEEc-CCCc-EEEEeCEEEECCCCchHH
Confidence 4577788888876669999999999999886 44 677776643 3343 479999999999999853
No 162
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.03 E-value=2.7e-08 Score=108.98 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=34.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
...+|+|||+|++|+++|..|++.| +|+|+|+.+..+|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 4579999999999999999999999 9999999876654
No 163
>PLN02985 squalene monooxygenase
Probab=99.02 E-value=4.7e-09 Score=115.87 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+||+++.+ .+++++.+ ++ .+.||.+.+ .+|+..++.|+.||.|+|.++.+
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~---~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KG---VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CC---EEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 4678889888887678999866 57888765 45 678888754 45766678999999999999864
No 164
>PLN02463 lycopene beta cyclase
Probab=99.02 E-value=3.9e-08 Score=106.38 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=32.7
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
....|||+|||||+||+++|+.|++.| +|+|||+.+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 344689999999999999999999999 999999865
No 165
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2e-09 Score=100.19 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=77.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
.....|+|||+|||+-+||+++++.- +-+|+|-....+ .+.||.......
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~----i~pGGQLtTTT~------------------------- 56 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG----IAPGGQLTTTTD------------------------- 56 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC----cCCCceeeeeec-------------------------
Confidence 44568999999999999999999998 999999644311 111222111000
Q ss_pred HHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
+ -.|... +...+|..++..+.++..+. |.+|+.. .|.++..+
T Consensus 57 ---------v-------eNfPGF--------------------Pdgi~G~~l~d~mrkqs~r~-Gt~i~tE-tVskv~~s 98 (322)
T KOG0404|consen 57 ---------V-------ENFPGF--------------------PDGITGPELMDKMRKQSERF-GTEIITE-TVSKVDLS 98 (322)
T ss_pred ---------c-------ccCCCC--------------------CcccccHHHHHHHHHHHHhh-cceeeee-ehhhcccc
Confidence 0 011111 12335778888888888875 9999887 47777654
Q ss_pred CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 245 LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 245 ~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
. ++.-+.. +.+ .+.|++||+|||+.++
T Consensus 99 s-----kpF~l~t---d~~---~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 99 S-----KPFKLWT---DAR---PVTADAVILATGASAK 125 (322)
T ss_pred C-----CCeEEEe---cCC---ceeeeeEEEeccccee
Confidence 2 3333332 222 5899999999998875
No 166
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.01 E-value=3.5e-09 Score=108.92 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=81.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
|||+|||||++|+++|+.|++.| +|+|+||....+. .....++.. ...+. + .... .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~-----~~~~~-----l---~~~~-~------- 57 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY--KPCGGALSP-----RVLEE-----L---DLPL-E------- 57 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc--ccccCccCH-----hHHHH-----h---cCCc-h-------
Confidence 69999999999999999999999 9999999876432 111111110 00000 0 0000 0
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
...... ....+. ..++.... ... . .... + ......+...|.+.+.+ .|++++.+++|+++..+++
T Consensus 58 ----~~~~~~--~~~~~~-~~~~~~~~-~~~-~-~~~~-~--~i~r~~l~~~l~~~~~~-~gv~~~~~~~v~~~~~~~~- 122 (295)
T TIGR02032 58 ----LIVNLV--RGARFF-SPNGDSVE-IPI-E-TELA-Y--VIDRDAFDEQLAERAQE-AGAELRLGTTVLDVEIHDD- 122 (295)
T ss_pred ----hhhhhe--eeEEEE-cCCCcEEE-ecc-C-CCcE-E--EEEHHHHHHHHHHHHHH-cCCEEEeCcEEeeEEEeCC-
Confidence 000000 001111 11111000 000 0 0000 0 01234677888888877 4999999999999987633
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+ .+.+ .++ ..+++|+.||+|+|..+.+
T Consensus 123 ---~~-~~~~---~~~-~~~~~a~~vv~a~G~~s~~ 150 (295)
T TIGR02032 123 ---RV-VVIV---RGG-EGTVTAKIVIGADGSRSIV 150 (295)
T ss_pred ---EE-EEEE---cCc-cEEEEeCEEEECCCcchHH
Confidence 22 1222 122 2368999999999988753
No 167
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.01 E-value=9.7e-10 Score=116.15 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+.+.|.+.+++. |+++++++.++++..+.+ .+.. .+.+..+|+..+|+||.||.|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~-gv~i~~~~~v~~~~~d~~----~~~~-~~~~~~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 111 PELDRALREEAEER-GVDIRFGTRVVSIEQDDD----GVTV-VVRDGEDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHHHHHH-TEEEEESEEEEEEEEETT----EEEE-EEEETCTCEEEEEEESEEEE-SGTT-HH
T ss_pred HHHHHhhhhhhhhh-hhhheeeeeccccccccc----cccc-ccccccCCceeEEEEeeeecccCcccch
Confidence 46778888888875 799999999999988744 3443 3445556887789999999999988853
No 168
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.01 E-value=4.3e-09 Score=112.93 Aligned_cols=184 Identities=20% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCC-C--H-------HHHHHHHHHhcC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSD-S--V-------ESHMQDTIVAGA 155 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d-~--~-------~~~~~~~~~~g~ 155 (647)
.++||+|||||++|+++|++|+++| +|+|+|+.....|+|..+.+++........ + . ..++........
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 999999999888888888887765544311 1 0 011111111110
Q ss_pred ---CCCCHHHHHHHHH-------hhHHHHHHHHHcCCcc---ccCCCCcccccccCCcccc-ceee--cCCCcHHHHHHH
Q 006397 156 ---YLCDDETVRVVCT-------EGPDRIRELIAIGASF---DRGEDGNLHLAREGGHSHH-RIVH--AADMTGREIERA 219 (647)
Q Consensus 156 ---~~~~~~~~~~~~~-------~~~~~~~~l~~~G~~~---~~~~~g~~~~~~~gg~~~~-r~~~--~~~~~g~~~~~~ 219 (647)
.+.....+..... ......+.++...... ......... ...+..... .... ........++..
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~l~~~~~~~a~~~~~~~~~~p~~~~~~ 161 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELE-PALGPDFVCGGLFDPTGGHLDPRLLTRA 161 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhC-CCCCcccceeeEecCCCCcCCHHHHHHH
Confidence 0111111111111 1111222222222221 000000000 000000000 0111 122235678899
Q ss_pred HHHHHHcCCC-cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 220 LLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 220 L~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
|.+.+.+. | ..+..++.++.+..+. + +.+|.+ ..| .|.|+.||+|+|+++..
T Consensus 162 l~~~~~~~-G~~~~~~~~~~~~~~~~~-~----~~~v~t---~~g---~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 162 LAAAAEEL-GVVIIEGGTPVTSLERDG-R----VVGVET---DGG---TIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHhc-CCeEEEccceEEEEEecC-c----EEEEEe---CCc---cEEeCEEEEcCchHHHH
Confidence 99999885 6 6777799999887641 2 334443 345 39999999999998754
No 169
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.00 E-value=1.5e-09 Score=123.40 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=42.3
Q ss_pred cceeEeCC-CCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhccc
Q 006397 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTS 496 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~~ 496 (647)
.|.|.||+ .++|++||+||+||++ +|. .....|+..|++||.++.+|+....
T Consensus 452 ~G~I~vd~~~~~Ts~pgVfA~GDv~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 452 NGTVKVDPETLQTSVAGVFAGGDCV-TGA--------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCcEeeCCCCCcCCCCCEEEcCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 36799997 5889999999999997 332 2457889999999999999987543
No 170
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.00 E-value=2e-09 Score=113.92 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=39.6
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
.|.|.||++.+|++||+||+|||+ ++. ..+..|+..|+.|+.++.+++
T Consensus 302 ~g~i~vd~~~~t~~~~vyaiGD~~-~~~--------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 302 KGEIVVDEKHMTSREGVFAAGDVV-TGP--------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCcEeeCCCcccCCCCEEEEcccc-cCc--------chHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999997 332 135678888999999988876
No 171
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.99 E-value=1.2e-08 Score=116.21 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=34.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
...+|+|||||++||++|..|++.| +|+|+|+.+..+|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 3578999999999999999999999 9999999887654
No 172
>PRK13984 putative oxidoreductase; Provisional
Probab=98.98 E-value=1.3e-09 Score=123.77 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=41.3
Q ss_pred cceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.|.|.||++++|++||+||+||++ +| .++..|+-.|+.||.++.+|+.
T Consensus 555 ~G~i~vd~~~~Ts~~gVfAaGD~~-~~---------~~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 555 RGRILTNEYGQTSIPWLFAGGDIV-HG---------PDIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCeEEeCCCCccCCCCEEEecCcC-Cc---------hHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999997 22 2467899999999999998874
No 173
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.98 E-value=3.6e-08 Score=107.39 Aligned_cols=69 Identities=7% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeE-EEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV-VRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~-~~i~A~~VVlAtGg~~~~ 283 (647)
..++..|.+.++++ ||+|++++.|++|+.+.++...+|+|+.+.....++. ....+|.||+++|++...
T Consensus 226 eSLV~PL~~~Le~~-GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDH-GVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhC-CCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 57888999999986 9999999999999985222123899998864222222 234569999999999753
No 174
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.97 E-value=9.1e-09 Score=119.49 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=36.8
Q ss_pred ceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHH
Q 006397 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|||.||++++|+.|++||+|||+ ...+ .+.+ ....|.-.|+.||.++..
T Consensus 252 ggI~Vd~~~~Ts~p~IyA~GD~a--~~~~--~~~g-l~~~a~~qa~vaA~ni~g 300 (785)
T TIGR02374 252 RGIIVNDSMQTSDPDIYAVGECA--EHNG--RVYG-LVAPLYEQAKVLADHICG 300 (785)
T ss_pred CCEEECCCcccCCCCEEEeeecc--eeCC--cccc-cHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999997 3322 1111 245567788888888764
No 175
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.97 E-value=5.4e-09 Score=114.22 Aligned_cols=60 Identities=8% Similarity=0.130 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHc----CCC--cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 212 TGREIERALLEAVVS----DPN--ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~----~~g--v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
....+...|.+.+++ . | ++|+++++|++|..+++ .+..|.+ .+| .|.|+.||+|+|+++.
T Consensus 209 d~~~L~~al~~~a~~~~~~~-G~~v~i~~~t~V~~I~~~~~----~~~~V~T---~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVP-GKKISINLNTEVLNIERSND----SLYKIHT---NRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhc-CCCEEEEeCCEEEEEEecCC----CeEEEEE---CCC---EEEeCEEEECcChhHH
Confidence 356788889888876 4 5 89999999999987633 2333432 445 5899999999999985
No 176
>PRK07045 putative monooxygenase; Reviewed
Probab=98.96 E-value=9.6e-09 Score=110.32 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
..+.+.|.+.+.+.+|++++++++|+++..++++ .++.|.. .+|+ ++.++.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADG---TVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCC---cEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 3577788888876679999999999999887555 4445544 3454 6899999999998884
No 177
>PRK06834 hypothetical protein; Provisional
Probab=98.95 E-value=1.5e-08 Score=111.47 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+++. |++++.+++|+++..++++ +.+.. .+|+ +++|+.||.|+|+.+.+
T Consensus 100 ~~le~~L~~~l~~~-gv~i~~~~~v~~v~~~~~~-------v~v~~-~~g~--~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 100 NHIERILAEWVGEL-GVPIYRGREVTGFAQDDTG-------VDVEL-SDGR--TLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCCe-------EEEEE-CCCC--EEEeCEEEEecCCCCCc
Confidence 45677788888774 9999999999999886432 22222 3454 68999999999998853
No 178
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.95 E-value=3.3e-08 Score=107.21 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=39.9
Q ss_pred cceeEeCCCCc-ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 436 CGGVRAGLQGE-TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~~~~-T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|+|.||++++ |+.||+||+|||+ .+.+. ........|.-.|+.+|+++...+..
T Consensus 294 ~G~I~Vd~~l~~~~~~~IfAiGD~a--~~~~~--~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 294 RGRISVDDHLRVKPIPNVFALGDCA--ANEER--PLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCcEEeCCCcccCCCCCEEEEeccc--cCCCC--CCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 48999999998 6999999999997 33221 11122345677889999888887644
No 179
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.95 E-value=1.4e-08 Score=113.73 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=89.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
+.++||+|||||++|+++|+.|+++| +|+|+||........ . ++. + ++...+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~-r---a~~--l---------------------~~~~~~ 60 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP-R---AVG--I---------------------DDEALR 60 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCC-c---eee--e---------------------CHHHHH
Confidence 45689999999999999999999999 999999987432211 0 111 0 011111
Q ss_pred HHHHhhHHHHHHHHHc-----CCccccCCCCccccccc----CCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcc
Q 006397 165 VVCTEGPDRIRELIAI-----GASFDRGEDGNLHLARE----GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEH 235 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~-----G~~~~~~~~g~~~~~~~----gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~ 235 (647)
.+..-. ..+.+... ++.+.. .+|....... +...++. ........+...|.+.+.+.+|++++.+
T Consensus 61 ~L~~lG--l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~---~~~~~q~~le~~L~~~~~~~~gv~v~~g 134 (538)
T PRK06183 61 VLQAIG--LADEVLPHTTPNHGMRFLD-AKGRCLAEIARPSTGEFGWPR---RNAFHQPLLEAVLRAGLARFPHVRVRFG 134 (538)
T ss_pred HHHHcC--ChhHHHhhcccCCceEEEc-CCCCEEEEEcCCCCCCCCCCh---hccCChHHHHHHHHHHHHhCCCcEEEcC
Confidence 000000 00111111 112211 1221111000 0000110 0111233566778887776569999999
Q ss_pred eEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 236 ~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
++|+++..++++ +. +.+.+ .+|+..+++|+.||.|+|..+.+
T Consensus 135 ~~v~~i~~~~~~----v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 135 HEVTALTQDDDG----VT-VTLTD-ADGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CEEEEEEEcCCe----EE-EEEEc-CCCCEEEEEEEEEEecCCCchhH
Confidence 999999887443 32 33332 25655689999999999998854
No 180
>PRK06184 hypothetical protein; Provisional
Probab=98.94 E-value=8.7e-09 Score=114.42 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+. |++++.+++|+++..++++ +. +.+.+..++ .+++|+.||.|+|+.+.+
T Consensus 109 ~~le~~L~~~l~~~-gv~i~~~~~v~~i~~~~~~----v~-v~~~~~~~~--~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 109 WRTERILRERLAEL-GHRVEFGCELVGFEQDADG----VT-ARVAGPAGE--ETVRARYLVGADGGRSFV 170 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCcEEEEEEEcCCc----EE-EEEEeCCCe--EEEEeCEEEECCCCchHH
Confidence 34667788888775 9999999999999876443 32 223222222 379999999999999854
No 181
>PRK09126 hypothetical protein; Provisional
Probab=98.94 E-value=1.8e-08 Score=108.44 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+.+.|.+.+.+..|+++++++.|+++..++ + .+ .|.+ .+|+ ++.||.||.|+|..+.+
T Consensus 110 ~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~---~~-~v~~---~~g~--~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 110 HLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-D---GA-QVTL---ANGR--RLTARLLVAADSRFSAT 169 (392)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-C---eE-EEEE---cCCC--EEEeCEEEEeCCCCchh
Confidence 35667777777655699999999999997753 3 22 2333 3454 68999999999987754
No 182
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.93 E-value=1.1e-08 Score=109.58 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
-..+...|.+.+.+.++|+++.++.|+.+..+++ .+. +.+. . +|+ ++.|+.||-|.|..|.+
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~----~v~-v~l~-~-dG~--~~~a~llVgADG~~S~v 164 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD----GVT-VTLS-F-DGE--TLDADLLVGADGANSAV 164 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC----ceE-EEEc-C-CCc--EEecCEEEECCCCchHH
Confidence 3578889999998877799999999999998754 354 4442 2 566 89999999999988853
No 183
>PRK08244 hypothetical protein; Provisional
Probab=98.92 E-value=1.7e-08 Score=111.93 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+++. |++++.+++++++..++++ +. +.+.+ .+| ..+++|+.||.|+|..+.+
T Consensus 100 ~~le~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~----v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 100 AETEKVLEEHARSL-GVEIFRGAEVLAVRQDGDG----VE-VVVRG-PDG-LRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HHHHHHHHHHHHHc-CCeEEeCCEEEEEEEcCCe----EE-EEEEe-CCc-cEEEEeCEEEECCCCChHH
Confidence 35666777777764 9999999999999876432 32 33333 234 2478999999999998853
No 184
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.90 E-value=7e-09 Score=114.05 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.9
Q ss_pred cceeE-eCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 436 CGGVR-AGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~-vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|.+. +|++++|++||+||+|||+ +|. .....|+..|++||.++.+|+.+
T Consensus 430 ~G~i~~~~~~~~Ts~~gVfAaGD~~-~g~--------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 430 RGNISAGYDDYSTSIPGVFAAGDCR-RGQ--------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCCEEecCCCceECCCCEEEeeccC-CCc--------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 36664 4678999999999999997 332 24567899999999999999854
No 185
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.89 E-value=6.7e-08 Score=102.87 Aligned_cols=55 Identities=15% Similarity=0.047 Sum_probs=40.7
Q ss_pred cceeEeCCCCcc-cccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 436 CGGVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~~~~T-~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|+|.||++++| ++|++||+|||+ .+... ........|...|+.+|.++...+..
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~--~~~~~--~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCA--VITDA--PRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeee--ecCCC--CCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 488999999998 999999999997 33221 11122345788899999998887654
No 186
>PRK07190 hypothetical protein; Provisional
Probab=98.89 E-value=3.1e-08 Score=108.95 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+. |++++.+++|+++..++++ +.+.. .+|+ +++|+.||.|+|+.+.+
T Consensus 110 ~le~~L~~~~~~~-Gv~v~~~~~v~~l~~~~~~-------v~v~~-~~g~--~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 110 YVEKLLDDKLKEA-GAAVKRNTSVVNIELNQAG-------CLTTL-SNGE--RIQSRYVIGADGSRSFV 167 (487)
T ss_pred HHHHHHHHHHHHC-CCEEEeCCEEEEEEEcCCe-------eEEEE-CCCc--EEEeCEEEECCCCCHHH
Confidence 4666777778774 9999999999999887443 22222 3454 79999999999988743
No 187
>PRK08013 oxidoreductase; Provisional
Probab=98.89 E-value=2.5e-08 Score=107.45 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+|++++.++.|+++..++++ + -+.+ .+|+ +++|+.||-|.|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~----v-~v~~---~~g~--~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENE----A-FLTL---KDGS--MLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe----E-EEEE---cCCC--EEEeeEEEEeCCCCcHH
Confidence 4677888888887668999999999999876433 2 1222 3454 68999999999988854
No 188
>PRK02106 choline dehydrogenase; Validated
Probab=98.89 E-value=2.9e-08 Score=111.59 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
.++..+.+..|++|+.++.|++|+.+ ++ +++||.+.+. .+....+.|+.||||+|++..
T Consensus 205 ~~l~~a~~~~nl~i~~~a~V~rI~~~-~~---~a~GV~~~~~-~~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 205 AYLDPALKRPNLTIVTHALTDRILFE-GK---RAVGVEYERG-GGRETARARREVILSAGAINS 263 (560)
T ss_pred HhhccccCCCCcEEEcCCEEEEEEEe-CC---eEEEEEEEeC-CcEEEEEeeeeEEEccCCCCC
Confidence 34444545579999999999999997 44 8999999763 355556789999999998863
No 189
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.88 E-value=2.9e-08 Score=106.80 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
..+...|.+.+.+. |++++.++.|+++..+++ .+. +.+ .+|+ ++.|+.||.|+|..+.
T Consensus 113 ~~l~~~L~~~~~~~-gv~i~~~~~v~~i~~~~~----~v~-v~~---~~g~--~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHAA-GVQLHCPARVVALEQDAD----RVR-LRL---DDGR--RLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHhC-CCEEEcCCeEEEEEecCC----eEE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 46778888888874 999999999999987633 232 322 3454 6899999999998874
No 190
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.86 E-value=3.5e-08 Score=103.97 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=31.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~ 122 (647)
.||+|||||++|+.+|+.|+++| +|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 49999999999999999999999 99999987653
No 191
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=2.8e-08 Score=98.52 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEec-CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCCCC
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTT-LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPST 287 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~-~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~ 287 (647)
....++.|...+++. |+.|+.+..|+.+... +++ ..++|.+ .+|. .+.||.+|+++|+|-.-+..+
T Consensus 152 a~kslk~~~~~~~~~-G~i~~dg~~v~~~~~~~e~~---~~v~V~T---t~gs--~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKAREL-GVIFRDGEKVKFIKFVDEEG---NHVSVQT---TDGS--IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHHc-CeEEecCcceeeEeeccCCC---ceeEEEe---ccCC--eeecceEEEEecHHHHhhcCc
Confidence 345677888888875 9999999999888643 233 4445554 3454 589999999999998765543
No 192
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.85 E-value=3.9e-08 Score=105.45 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+.+|++++.+++|+++..++++ +. +.+ .+|+ +++|+.||.|+|..+.+
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~----~~-v~~---~~g~--~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG----NR-VTL---ESGA--EIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe----EE-EEE---CCCC--EEEeeEEEEecCCCchh
Confidence 466677787777678999999999999876443 21 332 3454 78999999999988854
No 193
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.85 E-value=5e-08 Score=109.51 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.++++++.+++|+++..++++ +. +.+.+ .+| ..+++|+.||.|+|..+.+
T Consensus 125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~----v~-v~~~~-~~g-~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG----VT-LTVET-PDG-PYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE----EE-EEEEC-CCC-cEEEEeCEEEECCCCCcHH
Confidence 3566778888877668999999999999876432 21 33322 233 2468999999999998853
No 194
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.85 E-value=6.7e-08 Score=103.79 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+++..+++++ ++.|+++..+++ .+ .+.+ .+|+ ++.|+.||.|+|.++.+
T Consensus 110 ~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~----~~-~v~~---~~g~--~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 110 SSLIERALWAALRFQPNLTWF-PARAQGLEVDPD----AA-TLTL---ADGQ--VLRADLVVGADGAHSWV 169 (388)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC----eE-EEEE---CCCC--EEEeeEEEEeCCCCchH
Confidence 456788898888876349999 889999976533 22 2332 3353 68999999999998753
No 195
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.85 E-value=4.1e-08 Score=105.61 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.+|++++.++.|+++..++++ + .|.+ .+|+ +++|+.||.|+|..+.+
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDDDG----W-ELTL---ADGE--EIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCchh
Confidence 4577788888877669999999999999765332 2 2322 3454 68999999999988854
No 196
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.85 E-value=4.8e-08 Score=105.03 Aligned_cols=63 Identities=16% Similarity=0.015 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|++.+.+ .|+++++++.++++...++. ...|.+. .+|+..+++||.||.|.|..+.+
T Consensus 103 ~~l~~~Ll~~a~~-~gv~v~~~~~v~~i~~~~~~----~~~V~~~--~~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 103 TEVTRDLMAARLA-AGGPIRFEASDVALHDFDSD----RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred HHHHHHHHHHHHh-CCCeEEEeeeEEEEEecCCC----ceEEEEE--cCCeEEEEEeCEEEECCCCCCch
Confidence 3566777777766 49999999999998752122 2234442 35766789999999999988853
No 197
>PRK06847 hypothetical protein; Provisional
Probab=98.84 E-value=8e-08 Score=102.70 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=84.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
..||+|||||++|+++|+.|++.| +|+|+|+....... ..|+.. . +...+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~----g~g~~l--~---------------------~~~~~~l 56 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY----GAGITL--Q---------------------GNALRAL 56 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC----Cceeee--c---------------------HHHHHHH
Confidence 469999999999999999999999 99999997643210 111211 0 0000000
Q ss_pred HHhhHHHHHHHHHcCCccc----cCCCCccccccc----CCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEE
Q 006397 167 CTEGPDRIRELIAIGASFD----RGEDGNLHLARE----GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFA 238 (647)
Q Consensus 167 ~~~~~~~~~~l~~~G~~~~----~~~~g~~~~~~~----gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v 238 (647)
..- ...+.+.+.+.+.. ...+|....... .+..++ .........+...|.+.+.+. |++++.++.|
T Consensus 57 ~~~--gl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~i~r~~l~~~L~~~~~~~-gv~v~~~~~v 130 (375)
T PRK06847 57 REL--GVLDECLEAGFGFDGVDLFDPDGTLLAELPTPRLAGDDLP---GGGGIMRPALARILADAARAA-GADVRLGTTV 130 (375)
T ss_pred HHc--CCHHHHHHhCCCccceEEECCCCCEEEecCcccccccCCC---CcccCcHHHHHHHHHHHHHHh-CCEEEeCCEE
Confidence 000 00111111121111 011222111000 000000 011123456778888888764 9999999999
Q ss_pred EEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 239 IDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 239 ~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
+++..++ + .+ .+.+ .+|+ ++.||.||.|+|..+..
T Consensus 131 ~~i~~~~-~---~~-~v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 131 TAIEQDD-D---GV-TVTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred EEEEEcC-C---EE-EEEE---cCCC--EEEcCEEEECcCCCcch
Confidence 9997653 3 22 2332 3454 58999999999988754
No 198
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.84 E-value=6.8e-08 Score=103.17 Aligned_cols=60 Identities=10% Similarity=0.342 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+.+.++++++.++.++++..++++ +. +.+ .++ +++||.||.|.|..+.+
T Consensus 103 r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~----v~-v~~---~~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 103 NSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY----SI-IKF---DDK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe----EE-EEE---cCC---EEeeCEEEEeCCCCchh
Confidence 35788899999888667999999999999876432 22 332 233 69999999999988854
No 199
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.83 E-value=3.5e-08 Score=106.56 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+.+. |++++.++.|+++..+++ .+ .+.+ .+|+ .+.||.||.|+|..+.+
T Consensus 110 r~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~----~v-~v~~---~~g~--~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 110 NRVLINALRKRAEAL-GIDLREATSVTDFETRDE----GV-TVTL---SDGS--VLEARLLVAADGARSKL 169 (403)
T ss_pred hHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEcCC----EE-EEEE---CCCC--EEEeCEEEEcCCCChHH
Confidence 457888899888874 999999999999987633 22 2332 3454 68999999999987753
No 200
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.83 E-value=4.8e-08 Score=105.22 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+.+..+++++.++.++++..++++ +.+.. .+|+ ++.||.||.|+|..+.+
T Consensus 108 r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-------v~v~~-~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 108 RADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-------VTVFD-QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-------eEEEE-cCCC--EEecCEEEECCCcChHH
Confidence 34577788888877656999999999999865332 33322 3454 58999999999998865
No 201
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.82 E-value=1.1e-07 Score=106.25 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
..++..++++.|++|+.++.|++|+.+ ++ +++||.+.+. ++....+.|+.||+|+|++.
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~---ra~GV~~~~~-~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GN---RATGVEFKKG-GRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CC---eEEEEEEEeC-CcEEEEEEeeeEEEccCCCC
Confidence 344455555579999999999999997 55 8999998752 23344568899999999865
No 202
>PRK07538 hypothetical protein; Provisional
Probab=98.81 E-value=6.2e-08 Score=104.96 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCC-cEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~g-v~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+.+..| ++++.+++|+++..++++ .++ .+.+..+|+..+++||.||.|.|..+.+
T Consensus 101 R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~---~~~--~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 101 RGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV---TVV--FLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc---eEE--EEeccCCCccceEEeeEEEECCCCCHHH
Confidence 34677788888765435 579999999999876444 332 2333334555689999999999988853
No 203
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.81 E-value=6.4e-08 Score=103.77 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+..+++++.++.|+++..++ + .+ .+.. .+|+ .+.+|.||.|+|..+.+
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~---~~-~v~~---~~g~--~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-D---HV-ELTL---DDGQ--QLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-C---ee-EEEE---CCCC--EEEeeEEEEeCCCCCHH
Confidence 46778899888876349999999999998763 3 23 2322 3454 58999999999988753
No 204
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.81 E-value=6.1e-08 Score=104.10 Aligned_cols=37 Identities=38% Similarity=0.629 Sum_probs=33.7
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
.+..+||+|||||++|+++|+.|+++| +|+|+|+.+.
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 345689999999999999999999999 9999999864
No 205
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.81 E-value=1.2e-07 Score=103.12 Aligned_cols=37 Identities=35% Similarity=0.478 Sum_probs=33.5
Q ss_pred ccccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 85 SVKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 85 ~~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
....|||+||||||||++||+.|+++| +|+|+||...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 345699999999999999999999999 9999999753
No 206
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.79 E-value=3.1e-07 Score=97.12 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc-c
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA-G 281 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~-~ 281 (647)
|..+...|.+.+++. |++++.++.|+++..+ ++ ++.++.+. ++....+.||.||||+|+| +
T Consensus 262 G~RL~~aL~~~~~~~-Gg~il~g~~V~~i~~~-~~---~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 262 GIRLEEALKHRFEQL-GGVMLPGDRVLRAEFE-GN---RVTRIHTR---NHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHHHHHC-CCEEEECcEEEEEEee-CC---eEEEEEec---CCccceEECCEEEEccCCCcC
Confidence 455667788888875 9999999999999876 44 67776542 2323469999999999998 5
No 207
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=1e-08 Score=107.98 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=90.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc--cccccCCeeee--cCCCCCHHHHHHHHHHhcCCCCCHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN--TNYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDDET 162 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~--s~~a~Ggi~~~--~~~~d~~~~~~~~~~~~g~~~~~~~~ 162 (647)
.|||+|||||.||+-||+.+|+.| +++|+.-....-|. +.-+-||+.-. ...-|...-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG----------------- 66 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGG----------------- 66 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccc-----------------
Confidence 499999999999999999999999 99999876543232 22233554311 001010000
Q ss_pred HHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEE
Q 006397 163 VRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLL 242 (647)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~ 242 (647)
..-......++.|...... .......+| .......+...+.+.+...+|+.++.+ .|.+|+
T Consensus 67 ---------~Mg~~~D~~~IQ~r~LN~s-----KGPAVra~R----aQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli 127 (621)
T COG0445 67 ---------LMGKAADKAGIQFRMLNSS-----KGPAVRAPR----AQADKWLYRRAMKNELENQPNLHLLQG-EVEDLI 127 (621)
T ss_pred ---------hHHHhhhhcCCchhhccCC-----Ccchhcchh----hhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHh
Confidence 0011122344554321110 000111111 011123455666777777789999887 789998
Q ss_pred ecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 243 ~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
.+++. +|+||++. .|. .|.|++||++||.|=+
T Consensus 128 ~e~~~---~v~GV~t~---~G~--~~~a~aVVlTTGTFL~ 159 (621)
T COG0445 128 VEEGQ---RVVGVVTA---DGP--EFHAKAVVLTTGTFLR 159 (621)
T ss_pred hcCCC---eEEEEEeC---CCC--eeecCEEEEeeccccc
Confidence 86443 69999874 464 6999999999998743
No 208
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.79 E-value=7.6e-08 Score=105.65 Aligned_cols=56 Identities=11% Similarity=0.181 Sum_probs=46.9
Q ss_pred cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 226 SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 226 ~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+..+++|+.++.|++|+.++++ ..+|.||.+.+..+|+..+++|+.||||+|+...
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETN-ESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCC-CceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 3568999999999999987432 1279999999876788889999999999999875
No 209
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.79 E-value=7.6e-08 Score=103.64 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+.+.|.+.+.+..|++++.+++|+++..+++ .+ .+.+ .+|. .+.|+.||.|+|..+.+
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~----~~-~v~~---~~g~--~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQG----SV-RVTL---DDGE--TLTGRLLVAADGSHSAL 171 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC----eE-EEEE---CCCC--EEEeCEEEEecCCChhh
Confidence 45677777777666899999999999976533 22 1332 3343 58999999999988754
No 210
>PRK11445 putative oxidoreductase; Provisional
Probab=98.78 E-value=1.5e-07 Score=99.62 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+ + .|++++.++.++++..++++ + .+.+. .+|+..+++|+.||.|+|..+.+
T Consensus 99 ~~~~~~L~~~~-~-~gv~v~~~~~v~~i~~~~~~----~-~v~~~--~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 99 HKFDLWLKSLI-P-ASVEVYHNSLCRKIWREDDG----Y-HVIFR--ADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred HHHHHHHHHHH-h-cCCEEEcCCEEEEEEEcCCE----E-EEEEe--cCCcEEEEEeCEEEECCCCCcHH
Confidence 44555565543 4 48999999999999876432 2 23332 34654579999999999998754
No 211
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.78 E-value=5e-08 Score=105.40 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+. |++++.++.++++..++++ + .|.+ .+|+ ++.|+.||.|+|..+.+
T Consensus 112 ~~l~~~L~~~~~~~-gv~v~~~~~v~~i~~~~~~----v-~v~~---~~g~--~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 112 RVVQDALLERLHDS-DIGLLANARLEQMRRSGDD----W-LLTL---ADGR--QLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHHhcC-CCEEEcCCEEEEEEEcCCe----E-EEEE---CCCC--EEEeCEEEEecCCCchh
Confidence 35667888888774 9999999999999876432 2 1322 3454 68999999999998853
No 212
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.78 E-value=1.1e-08 Score=94.45 Aligned_cols=143 Identities=20% Similarity=0.249 Sum_probs=91.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVR 164 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~ 164 (647)
+.||+|||+|.+||+|||..+++. +|.|||..-.++|+++.- | .. ..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLG-G-QL-----------------------FS----- 125 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLG-G-QL-----------------------FS----- 125 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccccc-c-hh-----------------------hh-----
Confidence 579999999999999999999654 899999988777655431 1 10 00
Q ss_pred HHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEec
Q 006397 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT 244 (647)
Q Consensus 165 ~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~ 244 (647)
.+.-.. .+.-+|.+.|++++...+ +.... ....+......++...+||++++-+.|.+|+..
T Consensus 126 AMvvRK-PAhLFL~EigvpYedegd--YVVVK---------------HAALFtSTvmsk~LalPNVKLFNAtavEDLivk 187 (328)
T KOG2960|consen 126 AMVVRK-PAHLFLQEIGVPYEDEGD--YVVVK---------------HAALFTSTVMSKVLALPNVKLFNATAVEDLIVK 187 (328)
T ss_pred hhhhcC-hHHHHHHHhCCCcccCCC--EEEEe---------------eHHHHHHHHHHHHhcCCcceeechhhhhhhhcc
Confidence 001011 123367788999875433 32211 133566666777777899999999999999875
Q ss_pred CC-CCCceEEEEEEEe----cCCC-----eEEEEEcCeEEECCC
Q 006397 245 LD-GPDAVCHGVDTLN----VETQ-----EVVRFISKVTLLASG 278 (647)
Q Consensus 245 ~~-g~~~~v~Gv~~~~----~~~G-----~~~~i~A~~VVlAtG 278 (647)
+. .+.-+|.||++.- ...| .+.+|.|..||-+||
T Consensus 188 ~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 188 PGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred cCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 32 1123677776421 1112 123678877777776
No 213
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.76 E-value=9e-08 Score=103.41 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+..|++++.++.|+++..++++ + .|.+ .+|+ .+.||.||.|+|..+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE----A-WLTL---DNGQ--ALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe----E-EEEE---CCCC--EEEeCEEEEeCCCCChh
Confidence 3466778888877668999999999999876432 2 2333 3454 68999999999987754
No 214
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.76 E-value=4.4e-07 Score=100.57 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
..+...|.+.+++. |++|+.+++|.+|..+ ++ ++.||.+. +|+ .+.|+.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~-G~~i~~~~~V~~I~~~-~~---~~~gv~~~---~g~--~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKH-GGQIRYRARVTKIILE-NG---KAVGVKLA---DGE--KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHC-CCEEEeCCeeeEEEec-CC---cEEEEEeC---CCC--EEEcCEEEECCChHH
Confidence 45788899999885 9999999999999886 45 67788663 454 588999999999764
No 215
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.74 E-value=1.6e-07 Score=100.77 Aligned_cols=63 Identities=17% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+. |+.++.++.++.+...++. ..+|.+. .+|+...++||.||-|.|..+.+
T Consensus 103 ~~l~~~L~~~~~~~-g~~~~~~~~~v~~~~~~~~----~~~V~~~--~~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 103 TEVTRDLMEAREAA-GLTTVYDADDVRLHDLAGD----RPYVTFE--RDGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred HHHHHHHHHHHHhc-CCeEEEeeeeEEEEecCCC----ccEEEEE--ECCeEEEEEeCEEEECCCCchhh
Confidence 35667788887764 8899999888887652222 1245442 25665679999999999988854
No 216
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.73 E-value=1.5e-07 Score=93.28 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=46.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhc----C-CeEEEEecCCC-CCccccccCCeeeecCCCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPH-ESNTNYAQGGVSAVLCPSDS 142 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~----G-~V~vlEk~~~~-~g~s~~a~Ggi~~~~~~~d~ 142 (647)
.++||+|||||..|+++|+.|.++ | +|+|+|++... .++|..+.||++...+..+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEn 146 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPEN 146 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchh
Confidence 579999999999999999999863 5 99999998754 45677788999987654433
No 217
>PLN02785 Protein HOTHEAD
Probab=98.70 E-value=4.1e-07 Score=101.82 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=41.2
Q ss_pred cCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEE-----EcCeEEECCCcccc
Q 006397 226 SDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF-----ISKVTLLASGGAGH 282 (647)
Q Consensus 226 ~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i-----~A~~VVlAtGg~~~ 282 (647)
+..|++|+.++.|++|+.+++++..+++||.+.+. +|....+ .++.||+|+|+++.
T Consensus 231 ~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~-~g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 231 NPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDE-NGNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred CCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEEC-CCceEEEEeecccCceEEecccccCC
Confidence 34689999999999999974322237999999874 3543332 24899999999873
No 218
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.70 E-value=1.9e-07 Score=100.06 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
...+...|.+.+.+..|++++.++.|+++..++++ + .+.+ .+|+ .+.||.||.|+|..+.
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~----~-~v~~---~~g~--~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY----V-RVTL---DNGQ--QLRAKLLIAADGANSK 163 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe----E-EEEE---CCCC--EEEeeEEEEecCCChH
Confidence 34678888888876459999999999999876332 2 2322 3454 6899999999998875
No 219
>PRK07236 hypothetical protein; Provisional
Probab=98.70 E-value=2.3e-07 Score=99.62 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
..||+|||||++||++|+.|++.| +|+|+||.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 479999999999999999999999 9999999763
No 220
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.70 E-value=4.6e-08 Score=110.00 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=42.5
Q ss_pred cceeEeCC-CCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhcc
Q 006397 436 CGGVRAGL-QGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKST 495 (647)
Q Consensus 436 ~GGi~vD~-~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~~ 495 (647)
.|.|.||. .++|++||+||+||++ .|. ..+..|+..|+.||.++.+++...
T Consensus 395 ~G~i~vd~~~~~ts~~~Vfa~GD~~-~g~--------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 395 RGVVQVDPNFMMTGRPGVFAGGDMV-PGP--------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCEEeCCCCccCCCCCEEeccCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46789998 6789999999999997 332 367889999999999999998654
No 221
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.70 E-value=2.3e-07 Score=99.55 Aligned_cols=181 Identities=18% Similarity=0.172 Sum_probs=96.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-C-eEEEEecCCCCCccccccCCeeeecCCCCCHHHHH-HH-------HHHhcC-
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHM-QD-------TIVAGA- 155 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~-~~-------~~~~g~- 155 (647)
...||+|||||..|+++|++||++| + ++++|+.....|++..+.| .....-+.|...+.+ .+ ......
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtag-l~~~lr~~dv~~qlia~~~~~l~~~leeEtgl 116 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAG-LLWQLFPSDVELQLIAHTSRVLYRELEEETGL 116 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccccccc-ceeeccCCchhHHHHHHHHHHHHHHHHHhcCC
Confidence 4589999999999999999999999 7 5666777666666655544 433333333322221 11 111100
Q ss_pred ---CCCCHHHHHHHHHhhHH---HHHHHH----HcCCccccCCCCcc--cccccCCccc-cceeecCC--CcHHHHHHHH
Q 006397 156 ---YLCDDETVRVVCTEGPD---RIRELI----AIGASFDRGEDGNL--HLAREGGHSH-HRIVHAAD--MTGREIERAL 220 (647)
Q Consensus 156 ---~~~~~~~~~~~~~~~~~---~~~~l~----~~G~~~~~~~~g~~--~~~~~gg~~~-~r~~~~~~--~~g~~~~~~L 220 (647)
++.+-. .+...+.. .++.+. .+|++..-....+. ......-... -..+.+.| ..+..++.+|
T Consensus 117 ~tGwiq~G~---~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~al 193 (856)
T KOG2844|consen 117 HTGWIQNGG---IFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQAL 193 (856)
T ss_pred CcceecCCc---eEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHH
Confidence 000000 00000111 111121 12222110000000 0000000000 00111222 2367788999
Q ss_pred HHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 221 LEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 221 ~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
...+.+. |+.|++++.|++|....+ ++.||.+ .-| .|++..||.|+|-|++
T Consensus 194 a~~A~~~-GA~viE~cpV~~i~~~~~----~~~gVeT---~~G---~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 194 ARAASAL-GALVIENCPVTGLHVETD----KFGGVET---PHG---SIETECVVNAAGVWAR 244 (856)
T ss_pred HHHHHhc-CcEEEecCCcceEEeecC----Cccceec---cCc---ceecceEEechhHHHH
Confidence 9999875 999999999999987644 3447754 346 5999999999998875
No 222
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.70 E-value=7.4e-08 Score=93.39 Aligned_cols=58 Identities=16% Similarity=0.079 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
+..+...|...+++. ++++..++.|+++..++++ ..+ ...++ ..+.|+.||+|||.++
T Consensus 81 ~~~v~~yl~~~~~~~-~l~i~~~~~V~~v~~~~~~-------w~v-~~~~~--~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 81 GEEVLDYLQEYAERF-GLEIRFNTRVESVRRDGDG-------WTV-TTRDG--RTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHHHHT-TGGEETS--EEEEEEETTT-------EEE-EETTS---EEEEEEEEE---SSC
T ss_pred HHHHHHHHHHHHhhc-CcccccCCEEEEEEEeccE-------EEE-EEEec--ceeeeeeEEEeeeccC
Confidence 556777776777664 9999999999999988543 222 22455 3688999999999765
No 223
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.69 E-value=3.2e-07 Score=98.91 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
...+...|.+.+.+.++++++++++|+++..++ + .+ .+.+.+..+++ ++.||.||.|.|..+.+
T Consensus 106 r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~---~v-~v~~~~~~~~~--~~~adlvIgADG~~S~v 169 (400)
T PRK06475 106 RADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-N---SI-TATIIRTNSVE--TVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-C---ce-EEEEEeCCCCc--EEecCEEEECCCccHhH
Confidence 356778888888765689999999999998753 3 23 23333322232 68999999999999854
No 224
>PRK06996 hypothetical protein; Provisional
Probab=98.66 E-value=3.4e-07 Score=98.67 Aligned_cols=58 Identities=19% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecC-CCeEEEEEcCeEEECCCcc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE-TQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~-~G~~~~i~A~~VVlAtGg~ 280 (647)
..+...|.+.+.+. +++++.++.++++..+.++ |.+.... +|+ ..++|+.||.|+|+.
T Consensus 115 ~~l~~~L~~~~~~~-g~~~~~~~~v~~~~~~~~~-------v~v~~~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGT-PVRWLTSTTAHAPAQDADG-------VTLALGTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhC-CCEEEcCCeeeeeeecCCe-------EEEEECCCCcc-eEEeeeEEEECCCCC
Confidence 46788899998875 8999999999999765332 3332211 232 479999999999964
No 225
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.66 E-value=3.2e-07 Score=99.99 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCC--CcEEEcceEEEEEEec-----CCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 214 REIERALLEAVVSDP--NISVFEHHFAIDLLTT-----LDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~--gv~i~~~~~v~~l~~~-----~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
..+...|.+.+.+.. +++++.+++|+++..+ +++ .-+.|.+ .+|+ +++|+.||.|.|..+.+
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~---~~v~v~~---~~g~--~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNS---NWVHITL---SDGQ--VLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCC---CceEEEE---cCCC--EEEeeEEEEecCCCChh
Confidence 457788888887765 6999999999999752 111 1122332 3464 69999999999999854
No 226
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.64 E-value=3.7e-07 Score=100.53 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 279 (647)
..+.++|.+.+++. |++|+++++|.+|+.+ +| +.+++.. ..| ..+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~-Gg~I~~~~~V~~I~v~-~g---~g~~~~~---~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREH-GGEIRTGAEVSQILVE-GG---KGVGVRT---SDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHc-CCEEECCCceEEEEEe-CC---cceEEec---ccc--ceeccceeEecCch
Confidence 46889999999985 9999999999999997 45 4334433 334 46889999988875
No 227
>PTZ00367 squalene epoxidase; Provisional
Probab=98.64 E-value=5.6e-07 Score=100.10 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=32.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.++||+|||||++|+++|+.|+++| +|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 4689999999999999999999999 999999975
No 228
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.63 E-value=5.3e-07 Score=98.23 Aligned_cols=39 Identities=33% Similarity=0.461 Sum_probs=35.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
...+|+|||||++||+||.+|.+.| +|+|+|++...||.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 3579999999999999999999999 99999998876543
No 229
>PRK09897 hypothetical protein; Provisional
Probab=98.63 E-value=9.2e-07 Score=97.37 Aligned_cols=36 Identities=11% Similarity=0.381 Sum_probs=31.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 124 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~~g 124 (647)
.+|+|||||++|+++|..|.+.+ +|+|+|+....|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence 47999999999999999998865 8999999765553
No 230
>PRK07588 hypothetical protein; Provisional
Probab=98.63 E-value=4.4e-07 Score=97.57 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
||+|||||++|+++|+.|+++| +|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 8999999999999999999999 9999999864
No 231
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=98.43 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=48.9
Q ss_pred cCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccccCCCCCCCccCc-hhhHHHHHHHHHHHHHH
Q 006397 417 YGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLAS-NSLLEALVFARRAVQPS 488 (647)
Q Consensus 417 ~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g-~sl~~a~v~G~~Ag~~a 488 (647)
.|+.|.....+. ....-..|+|.||+.+||++||+||+||++..-+++-+.... --...|..+|+.|+.++
T Consensus 309 iG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai 380 (478)
T KOG1336|consen 309 IGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAI 380 (478)
T ss_pred eccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhh
Confidence 356666655554 223346799999999999999999999999655665443332 33456777777766554
No 232
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.60 E-value=5.1e-07 Score=96.97 Aligned_cols=34 Identities=47% Similarity=0.725 Sum_probs=31.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 123 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~ 123 (647)
||+|||||+||+++|+.|++.| +|+|||+.+..+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~ 35 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIP 35 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 8999999999999999999999 999999986543
No 233
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.59 E-value=1.2e-06 Score=99.35 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCC-CcEEEcceEEEEEEecCCCCCceEEEEEEEec---CCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDP-NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---ETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~-gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+...|.+.+.+.. ++++..+++++++..++++. ..| -|.+.+. .+|+..+++||.||-|.|+.+.+
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~-~~V-~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGE-YPV-TVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCC-CCE-EEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 46677888887642 26888999999998763220 113 3445443 14655689999999999999864
No 234
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.58 E-value=7.5e-07 Score=99.10 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCC-eEEEEEcCeEEECCCcccc
Q 006397 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ-EVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G-~~~~i~A~~VVlAtGg~~~ 282 (647)
..+...+.+.+|++|.+++.|++|+.++ + +++|+.+.....+ ....+.++.||||+|++..
T Consensus 206 ~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~---r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 206 RAYLKPALKRPNLTLLTGARVRRILLEG-D---RAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hhcchhHhcCCceEEecCCEEEEEEEEC-C---eeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 3444556667899999999999999984 4 7888888754433 3556778999999999874
No 235
>PRK06753 hypothetical protein; Provisional
Probab=98.55 E-value=8.9e-07 Score=94.56 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=31.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~ 122 (647)
||+|||||++|+++|+.|+++| +|+|+||.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999 99999998754
No 236
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.55 E-value=2.9e-06 Score=88.88 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
-.+.+.|.+.+.+.+|++++.+++|++|...++| + .-|.+.+..+|+...++|+.|++.+||.+-
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg---~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG---R-WEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCC---C-EEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 3577888888888779999999999999988665 2 236666777888889999999999999873
No 237
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=5e-07 Score=93.35 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=88.0
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC--ccccccCCeeee--cCCCCCHHHHHHHHHHhcCCCCCH
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES--NTNYAQGGVSAV--LCPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g--~s~~a~Ggi~~~--~~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
+..|||||||||-||+-||..+++.| +.+||...-..-| +..-+.||+.-. ....|...-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl-------------- 91 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGL-------------- 91 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcch--------------
Confidence 45799999999999999999999999 9999987653222 333345666421 1111111111
Q ss_pred HHHHHHHHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEE
Q 006397 161 ETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~ 240 (647)
....++.+.--+..|... .| ....-+| +......+.+.+.+.+...++.+|.++ .|.+
T Consensus 92 --~~rvcD~s~vq~k~LNrs--------~G-------PAVwg~R----AQiDR~lYkk~MQkei~st~nL~ire~-~V~d 149 (679)
T KOG2311|consen 92 --CSRVCDQSGVQYKVLNRS--------KG-------PAVWGLR----AQIDRKLYKKNMQKEISSTPNLEIREG-AVAD 149 (679)
T ss_pred --HhhhhhhhhhhHHHhhcc--------CC-------CcccChH----HhhhHHHHHHHHHHHhccCCcchhhhh-hhhh
Confidence 111122221112222110 00 0000001 011123445555556666678999888 5777
Q ss_pred EEecCCC-CCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 241 LLTTLDG-PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 241 l~~~~~g-~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
|+..+.+ ...+|.||+..| |. .|.|+.||+.||.|=
T Consensus 150 liv~~~~~~~~~~~gV~l~d---gt--~v~a~~VilTTGTFL 186 (679)
T KOG2311|consen 150 LIVEDPDDGHCVVSGVVLVD---GT--VVYAESVILTTGTFL 186 (679)
T ss_pred eeeccCCCCceEEEEEEEec---Cc--EeccceEEEeeccce
Confidence 7654322 234688998864 54 799999999999874
No 238
>PRK07208 hypothetical protein; Provisional
Probab=98.52 E-value=5.8e-06 Score=91.46 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 280 (647)
..+...|.+.+.+. |++|+.+++|++|..++++ .+.++.. +..+|+...+.||.||.|+-..
T Consensus 218 ~~l~~~L~~~l~~~-g~~i~~~~~V~~I~~~~~~---~v~~~~~-~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEAL-GGKVVLNAKVVGLHHDGDG---RIAVVVV-NDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHc-CCEEEeCCEEEEEEEcCCc---EEEEEEE-EcCCCCEEEEEcCEEEECCCHH
Confidence 35778888888774 8999999999999987544 4444433 3234554568999999998754
No 239
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.51 E-value=1e-05 Score=86.32 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHH--HhcC-CeEEEEecCCC
Q 006397 90 DFSVIGSGVAGLCYALEV--AKHG-TVAVITKAEPH 122 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~l--a~~G-~V~vlEk~~~~ 122 (647)
||||||||+||+++|+.| ++.| +|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 7778 99999987654
No 240
>PRK05868 hypothetical protein; Validated
Probab=98.50 E-value=1.9e-06 Score=91.94 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=31.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~ 122 (647)
.||+|||||++|+++|+.|+++| +|+|+||.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 38999999999999999999999 99999998653
No 241
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.50 E-value=9.6e-06 Score=90.00 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 280 (647)
..+..+|.+.+++. |++|+.+++|++|..+ ++ ++.||.+.+..+|+...+.||.||.++-..
T Consensus 232 ~~l~~aL~~~~~~~-G~~i~~~~~V~~I~~~-~~---~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRD-GGNLLTGQRVTAIHTK-GG---RAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCceEEEEEEe-CC---eEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 56888999999874 9999999999999987 44 677887755323333468999999998753
No 242
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.45 E-value=2.9e-06 Score=95.18 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
....+|+|||||++||++|+.|+++| +|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45689999999999999999999999 999999975
No 243
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.45 E-value=4.6e-06 Score=87.69 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=37.9
Q ss_pred cceeEeCCCCcc-cccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 436 CGGVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 436 ~GGi~vD~~~~T-~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
.|.+.||.+.++ +-|++||+|||+ .-.+. +.+.. .---|.-.|..+++.+.+.+..
T Consensus 277 ~Grl~V~~~L~~~~~~~IFa~GD~A-~~~~~-~p~P~-tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 277 RGRLVVNPTLQVPGHPDIFAAGDCA-AVIDP-RPVPP-TAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCEEeCCCcccCCCCCeEEEeccc-cCCCC-CCCCC-hhHHHHHHHHHHHHHHHHHhcC
Confidence 488999999884 799999999998 22322 21222 2234555677778877777655
No 244
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.44 E-value=2.2e-06 Score=93.14 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=47.8
Q ss_pred HHHHHHHHc-CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEc-CeEEECCCcccc
Q 006397 218 RALLEAVVS-DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS-KVTLLASGGAGH 282 (647)
Q Consensus 218 ~~L~~~~~~-~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~ 282 (647)
+++.+.+.. ++|+.+..++.|+.++.|..+ ++..||.+.. +.|+.+++.| |-|||++|+++.
T Consensus 256 ~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~--~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~S 319 (623)
T KOG1238|consen 256 KAYLKPIRLTRPNLHISRNAAVTRVLIDPAG--KRAKGVEFVR-DGGKEHTVKARKEVILSAGAINS 319 (623)
T ss_pred hhhhhhhhccCccccccccceEEEEEEcCCC--ceEEEEEEEe-cCceeeeecccceEEEeccccCC
Confidence 445555554 568999999999999998666 4788998864 3367778888 789999998873
No 245
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.42 E-value=7.3e-06 Score=89.94 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 279 (647)
..+...|.+.+.+. |++|+.++.|++|..++++ +++||.+.+...++..++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~-g~~i~l~~~V~~I~~~~~~---~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSR-GGEVRLNSRLKEIVLNEDG---SVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhc-CCEEeCCCeeEEEEECCCC---CEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45778888888774 9999999999999876555 68888875432223336899999999965
No 246
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.42 E-value=7.3e-07 Score=86.62 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=98.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-------CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-------TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDD 160 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-------~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~ 160 (647)
...|+|||||+.|.++||+|++.+ .|+|+|+....+|+|..+.|-+..+- ++
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc---------------------~~ 68 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWC---------------------QP 68 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhh---------------------CC
Confidence 468999999999999999999864 69999999998888877665443221 11
Q ss_pred HHHHHHHHhhHHHHHHH-------HHcCCc--------cccCCCCcccccccCCccccc--------e---eecCCCcHH
Q 006397 161 ETVRVVCTEGPDRIREL-------IAIGAS--------FDRGEDGNLHLAREGGHSHHR--------I---VHAADMTGR 214 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~l-------~~~G~~--------~~~~~~g~~~~~~~gg~~~~r--------~---~~~~~~~g~ 214 (647)
..+..++..+....+.| +.||.. .+.+ +-.......|-....| + -..+...++
T Consensus 69 s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~e-n~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~ 147 (380)
T KOG2852|consen 69 SIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWE-NTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPY 147 (380)
T ss_pred cccchhhHHHHHHHHHHHHhhcCcccccceeeeEEEEEeecc-cCCcccCCcchhhhhhHHhhhheeccCCCccceeCHH
Confidence 11111222221122222 123221 1100 0000000111000000 0 001223467
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCC
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 285 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~ 285 (647)
.+++.++..+++..||+++.+ .|.++..+ .+ ++.++.... ..+..+...++.||++.|.|...+.
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~dE-k~---r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskll 212 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSDE-KH---RINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLL 212 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeecc-cc---cccccchhh-hcCceEEeeeeEEEEecCCCchhhc
Confidence 899999999999878999998 57777533 44 676665432 1233456778999999999986543
No 247
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.38 E-value=6.4e-07 Score=86.52 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
+|+|||+|+||++||+.|++.| +|+|+||+.-.+|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCccc
Confidence 7999999999999999999999 9999999875544
No 248
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.38 E-value=7.6e-06 Score=91.08 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 280 (647)
..+...|.+.+++. |++|+.++.|++|..+ ++ ++++|.+ .+|+ .+.|+.||+|++..
T Consensus 219 ~~l~~al~~~~~~~-G~~i~~~~~V~~i~~~-~~---~~~~V~~---~~g~--~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDL-GGELRLNAEVIRIETE-GG---RATAVHL---ADGE--RLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHC-CCEEEECCeEEEEEee-CC---EEEEEEE---CCCC--EEECCEEEECCcHH
Confidence 56788898888875 9999999999999876 45 6777765 3454 58999999998853
No 249
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.33 E-value=5e-06 Score=90.22 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=34.9
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-C-eEEEEecCCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~~~~~g 124 (647)
...+||+|||||++|+++|++|.++| . ++|+||....+|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg 46 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC
Confidence 45689999999999999999999999 6 999999986554
No 250
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.33 E-value=3.6e-06 Score=91.23 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
+|+|||||++||++|+.|++.| +|+|+||.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 6999999999999999999986 89999997643
No 251
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.32 E-value=9.9e-06 Score=88.30 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccCC
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYP 285 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~ 285 (647)
...+...|.+.+.+. ||+++.++ |+++..+++| .|.+|.. .+|+ +|.||.||-|||-.+.+..
T Consensus 153 R~~fd~~L~~~A~~~-Gv~~~~g~-V~~v~~~~~g---~i~~v~~---~~g~--~i~ad~~IDASG~~s~L~~ 215 (454)
T PF04820_consen 153 RAKFDQFLRRHAEER-GVEVIEGT-VVDVELDEDG---RITAVRL---DDGR--TIEADFFIDASGRRSLLAR 215 (454)
T ss_dssp HHHHHHHHHHHHHHT-T-EEEET--EEEEEE-TTS---EEEEEEE---TTSE--EEEESEEEE-SGGG-CCCC
T ss_pred HHHHHHHHHHHHhcC-CCEEEeCE-EEEEEEcCCC---CEEEEEE---CCCC--EEEEeEEEECCCccchhhH
Confidence 456778888888886 99999985 7888777677 7877765 3464 7999999999997775543
No 252
>PLN02612 phytoene desaturase
Probab=98.30 E-value=2.5e-05 Score=87.78 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGG 279 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 279 (647)
..+...|.+.+++. |++|+.+++|++|..++++ ++.++.+ .+|+ .+.||.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~-G~~I~l~~~V~~I~~~~~g---~v~~v~~---~~G~--~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSL-GGEVRLNSRIKKIELNDDG---TVKHFLL---TNGS--VVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhc-CCEEEeCCeeeEEEECCCC---cEEEEEE---CCCc--EEECCEEEECCCH
Confidence 45778888888774 9999999999999986565 6767665 3464 5899999999864
No 253
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.29 E-value=2.1e-05 Score=78.15 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006397 216 IERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 216 ~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 280 (647)
+...|..+.++ .|.-++.+-+|.+.... ++ +|..+.+.+ ...+.++|+..|+|+|++
T Consensus 260 l~~~L~~~f~~-~Gg~~m~Gd~V~~a~~~-~~---~v~~i~trn---~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 260 LHNQLQRQFEQ-LGGLWMPGDEVKKATCK-GG---RVTEIYTRN---HADIPLRADFYVLASGSF 316 (421)
T ss_pred HHHHHHHHHHH-cCceEecCCceeeeeee-CC---eEEEEEecc---cccCCCChhHeeeecccc
Confidence 34566667766 48889999999998876 45 788877653 444578999999999976
No 254
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.29 E-value=1.3e-05 Score=89.31 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
.+..++..+.+.+.+. |++|+++++|+++..+ ++ ++.||.+.+..+|+...|.|+.||+|+|.|+.
T Consensus 126 dp~~l~~al~~~A~~~-Ga~i~~~t~V~~i~~~-~~---~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 126 DPFRLVAANVLDAQEH-GARIFTYTKVTGLIRE-GG---RVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred CHHHHHHHHHHHHHHc-CCEEEcCcEEEEEEEE-CC---EEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 3677888898888875 9999999999999886 45 78899887766777678999999999998874
No 255
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.27 E-value=1.5e-05 Score=85.99 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 278 (647)
..+..+|.+.++.. |.+++.+++|.+|..++++ ++.+|.. .+|+ +++|+.||....
T Consensus 232 g~L~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~g---~~~~V~~---~~Ge--~i~a~~VV~~~s 287 (443)
T PTZ00363 232 GGLPQAFSRLCAIY-GGTYMLNTPVDEVVFDENG---KVCGVKS---EGGE--VAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHHHc-CcEEEcCCeEEEEEEcCCC---eEEEEEE---CCCc--EEECCEEEECcc
Confidence 46888888888875 9999999999999987556 7777765 3465 689999998544
No 256
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.25 E-value=6.2e-06 Score=84.92 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=33.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
-+|+|||||++||++|+.|.+.| +|+|+|+...+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 48999999999999999999999 99999998766554
No 257
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.22 E-value=1.3e-06 Score=68.12 Aligned_cols=35 Identities=34% Similarity=0.564 Sum_probs=31.0
Q ss_pred EECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006397 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 127 (647)
Q Consensus 93 IIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~ 127 (647)
|||||++||++|+.|+++| +|+|+|+.+..+|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 8999999999999999999 9999999998776543
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.15 E-value=1.5e-05 Score=73.65 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.7
Q ss_pred EEECCcHHHHHHHHHHHhc-----C-CeEEEEecCC
Q 006397 92 SVIGSGVAGLCYALEVAKH-----G-TVAVITKAEP 121 (647)
Q Consensus 92 vIIGgG~AGl~aA~~la~~-----G-~V~vlEk~~~ 121 (647)
+|||+|++|++++.+|.++ . +|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999877 3 8999999766
No 259
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.13 E-value=8.1e-05 Score=81.89 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC--CCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLD--GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 213 g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~--g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
+..+...|.+.+++. |++|+.++.|++|..+++ + ..+++++.+.+. ++ ...+.||+||+|+....
T Consensus 218 ~~~l~~pl~~~L~~~-Gg~i~~~~~V~~I~~~~~~~~-~~~v~~v~~~~g-~~-~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 218 DKYLTKPILEYIEAR-GGKFHLRHKVREIKYEKSSDG-STRVTGLIMSKP-EG-KKVIKADAYVAACDVPG 284 (474)
T ss_pred chhHHHHHHHHHHHC-CCEEECCCEEEEEEEecCCCC-ceeEEEEEEecC-Cc-ceEEECCEEEECCChHH
Confidence 444667788888884 999999999999987632 2 113777766321 11 12588999999998653
No 260
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.11 E-value=1.9e-05 Score=83.96 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=32.8
Q ss_pred cEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc
Q 006397 90 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT 126 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s 126 (647)
||+|||||+||+++|+.|++. | +|+|+|+.+..+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~ 40 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNH 40 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcc
Confidence 899999999999999999987 8 999999987655543
No 261
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.04 E-value=9.3e-06 Score=84.53 Aligned_cols=39 Identities=36% Similarity=0.427 Sum_probs=35.5
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
+.+-+++|||||+||++||+.|++.| +|.|+||.+..||
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 34568999999999999999999999 9999999998765
No 262
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.02 E-value=2.5e-05 Score=86.42 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=77.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccC---CeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG---GVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRV 165 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~G---gi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~ 165 (647)
.|+|||||++||++|..|.+.| +|+++||.+..||.=.+... |..... ++.. .+.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y---~sl~------------~n~sk---- 63 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVY---DSLH------------TNTSK---- 63 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGS---TT-B-------------SS-G----
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccc---cceE------------EeeCc----
Confidence 5999999999999999999999 99999999877653221110 000000 0000 00000
Q ss_pred HHHhhHHHHHHHHH-cCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCc--EEEcceEEEEEE
Q 006397 166 VCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNI--SVFEHHFAIDLL 242 (647)
Q Consensus 166 ~~~~~~~~~~~l~~-~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv--~i~~~~~v~~l~ 242 (647)
++.. ...++.. . . +.-.+..++...|...++.. ++ .|.++|+|+++.
T Consensus 64 ----------~~~~fsdfp~p~---~-----------~-----p~f~~~~~v~~Yl~~Ya~~f-~L~~~I~fnt~V~~v~ 113 (531)
T PF00743_consen 64 ----------EMMAFSDFPFPE---D-----------Y-----PDFPSHSEVLEYLESYAEHF-GLRKHIRFNTEVVSVE 113 (531)
T ss_dssp ----------GGSCCTTS-HCC---C-----------C-----SSSEBHHHHHHHHHHHHHHT-TGGGGEETSEEEEEEE
T ss_pred ----------hHhcCCCcCCCC---C-----------C-----CCCCCHHHHHHHHHHHHhhh-CCcceEEEccEEeEee
Confidence 0000 0011110 0 0 00113557777777777763 54 688999999998
Q ss_pred ecCCCCCceEE-EEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 243 TTLDGPDAVCH-GVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 243 ~~~~g~~~~v~-Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
..++. ... ...+....+|+..+-..|+||+|||.+..
T Consensus 114 ~~~d~---~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 114 RDPDF---SATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp EETTT---T-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred ecccc---CCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 75442 111 12333334566555567999999998763
No 263
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=2.2e-05 Score=84.35 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=34.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
.-+|+|||+|+|||.+|..|.+.| .|+|+||....+|
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG 43 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc
Confidence 469999999999999999999999 9999999987654
No 264
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.97 E-value=8.1e-05 Score=85.81 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=31.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
....|+||||||||++||+.|+++| +|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4578999999999999999999999 999999854
No 265
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.96 E-value=3.7e-05 Score=89.49 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=30.0
Q ss_pred cEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEP 121 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~ 121 (647)
+|+|||||+|||++|+.|++. | +|+|+||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 8 9999999874
No 266
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.95 E-value=0.00021 Score=76.52 Aligned_cols=35 Identities=29% Similarity=0.534 Sum_probs=31.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHES 124 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~~g 124 (647)
.|+|||||++||+||++|++++ .|+|+|+++..||
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 4899999999999999999998 7999999876655
No 267
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.94 E-value=0.00013 Score=59.00 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=29.4
Q ss_pred EEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
|+|||||..|+-.|..|++.| +|+|+++.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 799999999999999999999 9999999775
No 268
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.93 E-value=9.3e-05 Score=77.66 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 284 (647)
....+...|.+.+.+. |++++.+++|++|..+ ++ .+.+|.+ .+| ++.|+.||+|+|.++..+
T Consensus 135 ~p~~l~~~l~~~~~~~-g~~~~~~~~v~~i~~~-~~---~~~~v~~---~~g---~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 135 DPRALLKALEKALEKL-GVEIIEHTEVQHIEIR-GE---KVTAIVT---PSG---DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred ChHHHHHHHHHHHHHc-CCEEEccceEEEEEee-CC---EEEEEEc---CCC---EEECCEEEEcCChhhhhc
Confidence 3578889999999885 9999999999999875 44 5666643 344 589999999999988644
No 269
>PLN02487 zeta-carotene desaturase
Probab=97.88 E-value=0.00035 Score=77.95 Aligned_cols=67 Identities=7% Similarity=0.034 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC-CceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP-DAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~-~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.+..+...+.+.++++ |++|+.++.|.+|..+.++. ..+++|+.+.+ .++...+.||.||+|++...
T Consensus 293 ~~~~l~~pl~~~L~~~-Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 293 PDVRLSGPIAKYITDR-GGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred chHHHHHHHHHHHHHc-CCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 3445788888999885 99999999999999863211 12478887732 23333588999999999653
No 270
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.86 E-value=8.5e-05 Score=76.95 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.+..++.+.+++. |.+|++...|.+|+.| +| +++||.+. +|. .++++.||--++-|-
T Consensus 265 avs~aia~~~~~~-GaeI~tka~Vq~Illd-~g---ka~GV~L~---dG~--ev~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 265 AVSFAIAEGAKRA-GAEIFTKATVQSILLD-SG---KAVGVRLA---DGT--EVRSKIVVSNATPWD 321 (561)
T ss_pred HHHHHHHHHHHhc-cceeeehhhhhheecc-CC---eEEEEEec---CCc--EEEeeeeecCCchHH
Confidence 4667888888875 9999999999999998 47 89999885 465 578888887777553
No 271
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.83 E-value=0.0004 Score=74.39 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccccC
Q 006397 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY 284 (647)
Q Consensus 212 ~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 284 (647)
....++..|.+.+.+ |++++++++|++|..+ ++ . .++.+ .+|. .+.|+.||+|+|.++...
T Consensus 133 dp~~~~~~l~~~~~~--G~~i~~~~~V~~i~~~-~~---~-~~v~t---~~g~--~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 133 SPPQLCRALLAHAGI--RLTLHFNTEITSLERD-GE---G-WQLLD---ANGE--VIAASVVVLANGAQAGQL 193 (381)
T ss_pred ChHHHHHHHHhccCC--CcEEEeCCEEEEEEEc-CC---e-EEEEe---CCCC--EEEcCEEEEcCCcccccc
Confidence 456788888888764 9999999999999875 33 3 23332 3453 489999999999988543
No 272
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.78 E-value=0.00017 Score=79.38 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=35.2
Q ss_pred eeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHH
Q 006397 438 GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 438 Gi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
||.||..++|++|.+||+|||+ -..|.++ .-...++-.++.++.|+..
T Consensus 258 GIvvnd~mqTsdpdIYAvGEca--e~~g~~y---GLVaP~yeq~~v~a~hl~~ 305 (793)
T COG1251 258 GIVVNDYMQTSDPDIYAVGECA--EHRGKVY---GLVAPLYEQAKVLADHLCG 305 (793)
T ss_pred CeeecccccccCCCeeehhhHH--HhcCccc---eehhHHHHHHHHHHHHhcc
Confidence 8999999999999999999998 2323221 1245666677777777654
No 273
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=0.00031 Score=77.50 Aligned_cols=33 Identities=33% Similarity=0.565 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
-.|+|||||.+|+-+|..|++.| +|+|+|+.+.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 47999999999999999999999 9999998653
No 274
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.73 E-value=3.1e-05 Score=81.75 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=35.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 127 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~ 127 (647)
+||+|||||++|+++|..|++.| +|+|+|+....+|.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 69999999999999999999999 9999999887766543
No 275
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.69 E-value=4.1e-05 Score=83.73 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=35.7
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
....+|||||||+|||+||..|.+.| +|+|+|.....||
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 34679999999999999999999999 9999999887776
No 276
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.67 E-value=0.0013 Score=70.07 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEE---cCeEEECCCccc
Q 006397 214 REIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI---SKVTLLASGGAG 281 (647)
Q Consensus 214 ~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~---A~~VVlAtGg~~ 281 (647)
..++..|.+.++++ ||++.+++.|++|..+.++..+++.++.+. .+|+...|. -|.|++..|...
T Consensus 207 eSii~Pl~~~L~~~-GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQ-GVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHC-CCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccc
Confidence 46788899999886 999999999999998654434567777665 345554553 378888888654
No 277
>PLN02576 protoporphyrinogen oxidase
Probab=97.65 E-value=5.5e-05 Score=84.08 Aligned_cols=39 Identities=33% Similarity=0.484 Sum_probs=35.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhc-C-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKH-G-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~-G-~V~vlEk~~~~~g~ 125 (647)
.++||+|||||++||+||++|++. | +|+|+|+....||-
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 457999999999999999999999 9 99999999877664
No 278
>PRK07233 hypothetical protein; Provisional
Probab=97.63 E-value=5.7e-05 Score=82.33 Aligned_cols=37 Identities=30% Similarity=0.537 Sum_probs=34.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s 126 (647)
+|+|||||++||+||+.|+++| +|+|+|+....||..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 5899999999999999999999 999999999877743
No 279
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.61 E-value=0.00058 Score=71.52 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 215 EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 215 ~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
.+...+.-.+.+ ..-.+.++.+|++|..+.++.. ...-|.+.+ .+|+..++.|+.||+|+|..+.+
T Consensus 96 ef~dYl~Wva~~-~~~~v~~~~~V~~I~~~~~~~~-~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 96 EFNDYLRWVAEQ-LDNQVRYGSEVTSIEPDDDGDE-DLFRVTTRD-SDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHHHHHHCC-GTTTEEESEEEEEEEEEEETTE-EEEEEEEEE-TTS-EEEEEESEEEE----EE--
T ss_pred HHHHHHHHHHHh-CCCceEECCEEEEEEEecCCCc-cEEEEEEee-cCCCeeEEEeCeEEECcCCCCCC
Confidence 444444443433 3444778999999987643211 344555555 56777799999999999966543
No 280
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.59 E-value=0.00028 Score=69.90 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=33.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHE 123 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~ 123 (647)
..+||.||||||+.|++.|.+|.-+ + +|+|+||.....
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4579999999999999999999876 6 999999987543
No 281
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0011 Score=70.27 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=33.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC----CeEEEEecCCCCCcccc
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNY 128 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G----~V~vlEk~~~~~g~s~~ 128 (647)
++|+|||||++|+++|.+|.+.- .|.|+|+.+..+++..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 68999999999999999998853 59999998876654444
No 282
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.00086 Score=73.80 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
-.|+|||||..|+-+|..+++.| +|+|+++.+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 47999999999999999999999 9999998653
No 283
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.56 E-value=0.00093 Score=73.53 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.+|+|||||.+|+.+|..|++.| +|+|+|+.+
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999865
No 284
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.55 E-value=0.00092 Score=74.48 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=39.2
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.||+++.++.++++..+ ++ ++.+|.+.+..+|+...+.+|.||+|+|..+
T Consensus 401 ~gV~i~~~~~v~~i~~~-~~---~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGD-GD---KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred CCCEEEECCeeEEEEcC-CC---EEEEEEEEECCCCcEEEEEcCEEEEEeCCcC
Confidence 49999999999999754 34 6778887765556666899999999998443
No 285
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=9.2e-05 Score=73.64 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=37.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCcccc
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 128 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~ 128 (647)
+|++|||+|.+|+..|..|++.| +|+||||.+..||+..-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999 99999999988887654
No 286
>PLN02268 probable polyamine oxidase
Probab=97.54 E-value=7.9e-05 Score=81.36 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=34.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s 126 (647)
+|+|||||++||+||+.|.+.| +|+|||+.+..||..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 7999999999999999999999 999999999887754
No 287
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.54 E-value=8e-05 Score=81.98 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=34.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhc----C-CeEEEEecCCCCCc
Q 006397 89 FDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPHESN 125 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~----G-~V~vlEk~~~~~g~ 125 (647)
.||+|||||++||+||+.|+++ | +|+|+|+.+..||.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 5899999999999999999998 9 99999999877664
No 288
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.54 E-value=0.00011 Score=79.96 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=34.6
Q ss_pred cceeEeCCCCcccccCcccccccccCCC---CCCCccCchhhHHHHHHHHHHHHHHHH
Q 006397 436 CGGVRAGLQGETNVRGLYVAGEVACTGL---HGANRLASNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 436 ~GGi~vD~~~~T~ipGLyAaGe~a~gG~---~Ga~rl~g~sl~~a~v~G~~Ag~~a~~ 490 (647)
.|+|.||++++|+.|++||+|||+ +.. .|...... ....|.-.|+.|+++++.
T Consensus 248 ~G~i~vd~~~~t~~~~Vya~GD~~-~~~~~~~~~~~~~~-~~~~A~~~g~~~a~ni~g 303 (427)
T TIGR03385 248 TGAIWVNEKFQTSVPNIYAAGDVA-ESHNIITKKPAWVP-LAWGANKMGRIAGENIAG 303 (427)
T ss_pred CCCEEECCCcEeCCCCEEEeeeeE-EeeeccCCCceeee-chHHHHHHHHHHHHHhcC
Confidence 378999999999999999999997 221 11110001 123455667777777653
No 289
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=0.001 Score=73.08 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-+|+|||||.+|+-+|..+++.| +|+|+++.+
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 290
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.51 E-value=0.0013 Score=72.40 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+|+.+
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999999999999999999 999999855
No 291
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.48 E-value=0.00093 Score=74.51 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=40.2
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006397 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 280 (647)
.||+++.++.++++..+ ++ ++.++.+.+..+|+..++.+|.|++|+|-.
T Consensus 400 ~gI~i~~~~~v~~i~~~-~g---~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 400 PNVTIITNAQTTEVTGD-GD---KVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CCcEEEECcEEEEEEcC-CC---cEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 59999999999999864 34 788888877666776789999999999844
No 292
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.47 E-value=0.0016 Score=71.80 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..+++.| +|+|+|+.+
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~ 205 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD 205 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999754
No 293
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.47 E-value=0.0012 Score=72.65 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-+|+|||+|..|+-+|..|++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 47999999999999999999999 999999865
No 294
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00012 Score=78.25 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=33.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
.|+|+|||+|||+||++|+++| +|+|+|+++..||
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 5899999999999999999999 9999999998776
No 295
>PRK06370 mercuric reductase; Validated
Probab=97.45 E-value=0.0014 Score=72.19 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
-.|+|||||..|+-+|..+++.| +|+|+++.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 47999999999999999999999 9999998653
No 296
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.44 E-value=0.00013 Score=80.08 Aligned_cols=36 Identities=22% Similarity=0.538 Sum_probs=32.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCCCCc
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESN 125 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~~g~ 125 (647)
+|+|||||+|||+||+.|++.| +|+|+|+....||.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 6999999999999999999976 79999999877763
No 297
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.43 E-value=0.00099 Score=72.89 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..|.+.| +|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 47999999999999999999999 999999864
No 298
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.40 E-value=0.0015 Score=67.24 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcc
Q 006397 228 PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGA 280 (647)
Q Consensus 228 ~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 280 (647)
.||+++.++.++++..+ + ++.++.+.+..+++...+.+|.||+|+|-.
T Consensus 190 ~gv~~~~~~~v~~i~~~--~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 237 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD--N---KVEGVKIKNTVTGEEEELKVDGVFIAIGHE 237 (300)
T ss_pred CCeEEEeccEEEEEEcc--C---cEEEEEEEecCCCceEEEEccEEEEeeCCC
Confidence 49999999999999754 2 566676665555666789999999999944
No 299
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.36 E-value=0.0016 Score=68.34 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=75.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC---CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHH
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 163 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~ 163 (647)
....|+|||||..+.-++..|.+++ +|.++-|+..... .++++- ...+.+|+.+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~--------------~d~s~f---------~ne~f~P~~v 245 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFP--------------MDDSPF---------VNEIFSPEYV 245 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB------------------CC---------HHGGGSHHHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCC--------------Cccccc---------hhhhcCchhh
Confidence 4568999999999999999999887 6889998763210 000000 0112456666
Q ss_pred HHHHHhhHHHHHHHH-HcC-CccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHH-----HHHcCCCcEEEcce
Q 006397 164 RVVCTEGPDRIRELI-AIG-ASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLE-----AVVSDPNISVFEHH 236 (647)
Q Consensus 164 ~~~~~~~~~~~~~l~-~~G-~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~-----~~~~~~gv~i~~~~ 236 (647)
..+.....+.-..+. +.. ..+. + ....+...|++ .+.....++++.++
T Consensus 246 ~~f~~l~~~~R~~~l~~~~~~ny~-------------~------------i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~ 300 (341)
T PF13434_consen 246 DYFYSLPDEERRELLREQRHTNYG-------------G------------IDPDLLEAIYDRLYEQRVSGRGRLRLLPNT 300 (341)
T ss_dssp HHHHTS-HHHHHHHHHHTGGGTSS-------------E------------B-HHHHHHHHHHHHHHHHHT---SEEETTE
T ss_pred hhhhcCCHHHHHHHHHHhHhhcCC-------------C------------CCHHHHHHHHHHHHHHHhcCCCCeEEeCCC
Confidence 555544433322222 110 0000 0 01233333333 33334479999999
Q ss_pred EEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006397 237 FAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 237 ~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 278 (647)
+|+++..+++| .+ -+.+.+..+++...+.+|.||+|||
T Consensus 301 ~v~~~~~~~~~---~~-~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 301 EVTSAEQDGDG---GV-RLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEEEEEEES-S---SE-EEEEEETTT--EEEEEESEEEE---
T ss_pred EEEEEEECCCC---EE-EEEEEECCCCCeEEEecCEEEEcCC
Confidence 99999887654 33 3566676778888999999999999
No 300
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.36 E-value=0.0024 Score=70.48 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=29.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|..|+-+|..+++.| +|+|+++.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999999999999999999 999999865
No 301
>PRK12831 putative oxidoreductase; Provisional
Probab=97.35 E-value=0.0018 Score=71.13 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..|.+.| +|+|+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 48999999999999999999999 999998754
No 302
>PRK06116 glutathione reductase; Validated
Probab=97.35 E-value=0.0021 Score=70.50 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..|++.| +|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 303
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.33 E-value=0.0022 Score=70.02 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
-.|+|||||.+|+.+|..+++.| +|+|+|+.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 37999999999999999999999 9999998653
No 304
>PRK10262 thioredoxin reductase; Provisional
Probab=97.31 E-value=0.0027 Score=66.26 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=69.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-.|+|||+|..|+-.|..|++.| +|+++++.+.... ++
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~----------------------------------~~------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA----------------------------------EK------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC----------------------------------CH-------
Confidence 47999999999999999999999 9999998652100 00
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
.+...+.+.+++ .||+++.++.++++..+ ++
T Consensus 186 -----------------------------------------------~~~~~~~~~l~~-~gV~i~~~~~v~~v~~~-~~ 216 (321)
T PRK10262 186 -----------------------------------------------ILIKRLMDKVEN-GNIILHTNRTLEEVTGD-QM 216 (321)
T ss_pred -----------------------------------------------HHHHHHHhhccC-CCeEEEeCCEEEEEEcC-Cc
Confidence 011223344445 49999999999999754 33
Q ss_pred CCceEEEEEEEecC-CCeEEEEEcCeEEECCCc
Q 006397 248 PDAVCHGVDTLNVE-TQEVVRFISKVTLLASGG 279 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~-~G~~~~i~A~~VVlAtGg 279 (647)
.+.++.+.+.. +++..++.+|.||+|+|-
T Consensus 217 ---~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 217 ---GVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred ---cEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 46677765432 234457999999999983
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.28 E-value=0.0023 Score=68.46 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=29.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.+|+|||||..|+-+|..|++.| +|+++++.+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 306
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.27 E-value=0.0021 Score=69.24 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
-+|+|||||..|+-+|..|++.| +|+|+|+.+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 46999999999999999999999 9999998653
No 307
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.25 E-value=0.003 Score=69.54 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 47999999999999999999999 999999865
No 308
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.25 E-value=0.00028 Score=77.67 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.3
Q ss_pred cEEEECCcHHHHHHHHHHHhc------C-CeEEEEecCCCCCc
Q 006397 90 DFSVIGSGVAGLCYALEVAKH------G-TVAVITKAEPHESN 125 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~------G-~V~vlEk~~~~~g~ 125 (647)
+|+|||||++||+||+.|++. | +|+|+|+.+..||.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 699999999999999999985 5 89999999877764
No 309
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.24 E-value=0.00024 Score=72.75 Aligned_cols=54 Identities=28% Similarity=0.402 Sum_probs=40.4
Q ss_pred ecceeEeCCCCcccccCccccccccc--CCCCCCCccCchhhHHHHHHHHHHHHHHHHh
Q 006397 435 MCGGVRAGLQGETNVRGLYVAGEVAC--TGLHGANRLASNSLLEALVFARRAVQPSIDH 491 (647)
Q Consensus 435 ~~GGi~vD~~~~T~ipGLyAaGe~a~--gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~ 491 (647)
..||++||...+ .-.+||+|||++| .|+-|+-|.-. .-.|+|+||+||+++...
T Consensus 464 ~lGGfrvnaeL~-ar~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgA 519 (659)
T KOG1346|consen 464 KLGGFRVNAELK-ARENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGA 519 (659)
T ss_pred ccCcEEeeheee-cccceeeecchhhhhcccccceeccc--cccceeeceecccccccc
Confidence 357888877655 3468999999997 56677766653 456899999999987653
No 310
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00036 Score=73.25 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=37.2
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccc
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN 127 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~ 127 (647)
...+||||||+|.+||++|++|.+.| +|+|+|..+..+|-+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 34689999999999999999999999 9999999887776443
No 311
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.22 E-value=0.0004 Score=75.86 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=33.2
Q ss_pred cccEEEECCcHHHHHHHHHHHh--cC-CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAK--HG-TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~--~G-~V~vlEk~~~~~g 124 (647)
..+|+||||||||+.||..|++ .| +|+|+|+.+.++|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG 65 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence 4689999999999999999987 68 9999999987655
No 312
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.18 E-value=0.0045 Score=67.81 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47999999999999999999999 999999865
No 313
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.17 E-value=0.00039 Score=74.17 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=30.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
+||+|||||.+|+.+|+.|+++| +|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 48999999999999999999999 9999998764
No 314
>PLN02676 polyamine oxidase
Probab=97.16 E-value=0.0004 Score=76.55 Aligned_cols=39 Identities=13% Similarity=0.347 Sum_probs=35.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-C-eEEEEecCCCCCcc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~~~~~g~s 126 (647)
.+||+|||||++||+||+.|++.| + |+|+|+....+|..
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 579999999999999999999999 5 99999998777643
No 315
>PTZ00058 glutathione reductase; Provisional
Probab=97.14 E-value=0.0057 Score=68.42 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+++++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 47999999999999999999999 999999865
No 316
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.13 E-value=0.0047 Score=66.85 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=71.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-.++|||||..|+--|..+++.| +|+|||+.+..-. ..|
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------------------~~D-------- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------------------GED-------- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------------------cCC--------
Confidence 46999999999999999999999 9999999764210 001
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
..+...+.+.+++ .|+++++++.++.+..++ +
T Consensus 214 ----------------------------------------------~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~~~-~ 245 (454)
T COG1249 214 ----------------------------------------------PEISKELTKQLEK-GGVKILLNTKVTAVEKKD-D 245 (454)
T ss_pred ----------------------------------------------HHHHHHHHHHHHh-CCeEEEccceEEEEEecC-C
Confidence 1344556666766 599999999999997753 2
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
. ..+.+. +|+...+.|+.|++|+|-.+
T Consensus 246 ---~-v~v~~~---~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 246 ---G-VLVTLE---DGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred ---e-EEEEEe---cCCCCEEEeeEEEEccCCcc
Confidence 2 234333 33322689999999999665
No 317
>PLN02568 polyamine oxidase
Probab=97.07 E-value=0.00059 Score=75.94 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=33.6
Q ss_pred ccccEEEECCcHHHHHHHHHHHhc-----C-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKH-----G-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~-----G-~V~vlEk~~~~~g~ 125 (647)
...||+|||||++||+||..|++. | +|+|+|+....||.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 347999999999999999999965 4 79999998877663
No 318
>PLN02529 lysine-specific histone demethylase 1
Probab=97.07 E-value=0.00064 Score=77.64 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=35.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
...||+|||||++|++||..|+++| +|+|+|+....||.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4579999999999999999999999 99999998766653
No 319
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.06 E-value=0.0066 Score=66.44 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 36999999999999999999999 999999865
No 320
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.06 E-value=0.00068 Score=77.86 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=35.4
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
...+|+|||||++|++||+.|++.| +|+|+|+....||.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 4579999999999999999999999 99999998877664
No 321
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.05 E-value=0.0065 Score=66.51 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..+++.| +|+++++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 47999999999999999999999 999998754
No 322
>PLN02507 glutathione reductase
Probab=97.02 E-value=0.0077 Score=66.76 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 47999999999999999999999 999999865
No 323
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.99 E-value=0.006 Score=71.57 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=69.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCT 168 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~ 168 (647)
.++|||||..|+-+|..|++.| +|+|+|..+..-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------------------------------- 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------------------------------- 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh--------------------------------------------
Confidence 6899999999999999999999 9999998652100
Q ss_pred hhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCCC
Q 006397 169 EGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGP 248 (647)
Q Consensus 169 ~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~ 248 (647)
..++ ......+.+.+++. ||+++.++.+.++..++++
T Consensus 183 -------------~~ld----------------------------~~~~~~l~~~L~~~-GV~v~~~~~v~~I~~~~~~- 219 (847)
T PRK14989 183 -------------EQLD----------------------------QMGGEQLRRKIESM-GVRVHTSKNTLEIVQEGVE- 219 (847)
T ss_pred -------------hhcC----------------------------HHHHHHHHHHHHHC-CCEEEcCCeEEEEEecCCC-
Confidence 0000 01223445556664 9999999999999754323
Q ss_pred CceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 249 DAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 249 ~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
.+..+.+ .+|+ .+.+|.||+|+|-.++
T Consensus 220 --~~~~v~~---~dG~--~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 220 --ARKTMRF---ADGS--ELEVDFIVFSTGIRPQ 246 (847)
T ss_pred --ceEEEEE---CCCC--EEEcCEEEECCCcccC
Confidence 3444443 3455 6899999999996654
No 324
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.98 E-value=0.0083 Score=66.10 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-+|+|||||..|+-.|..+++.| +|+|||+.+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 47999999999999999999999 999999865
No 325
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.98 E-value=0.0068 Score=65.99 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||.+|+-+|..|++.| +|+++++.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 47999999999999999999999 999999865
No 326
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.98 E-value=0.0088 Score=68.01 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
-.|+|||||..|+-.|..+++.| +|+|+|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 37999999999999999999999 9999998653
No 327
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.97 E-value=0.0058 Score=65.85 Aligned_cols=35 Identities=37% Similarity=0.453 Sum_probs=32.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 123 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~ 123 (647)
.+|+|||+|.+|+.+|..|+++| +|+++|+.+..+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~ 172 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG 172 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence 69999999999999999999999 999999987643
No 328
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.97 E-value=0.009 Score=65.31 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 37999999999999999999999 999999864
No 329
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.96 E-value=0.0093 Score=65.64 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|..|+-.|..|++.| +|+++++.+
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 37999999999999999999999 999999765
No 330
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.94 E-value=0.009 Score=65.96 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=28.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
.++|||||..|+-.|..+++.| +|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6999999999999999999999 99999874
No 331
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.93 E-value=0.011 Score=64.87 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=29.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.+
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 47999999999999999999999 999999865
No 332
>PRK14727 putative mercuric reductase; Provisional
Probab=96.91 E-value=0.012 Score=65.09 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
-.|+|||+|..|+-.|..+++.| +|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 37999999999999999999999 99999864
No 333
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.90 E-value=0.0064 Score=71.16 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..|++.| +|+|+|+.+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 36999999999999999999999 999999754
No 334
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.90 E-value=0.0092 Score=65.82 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
..+.+.+++. ||+++.++.++++..++++ ...+.+ .+|+ .+.+|.||+|+|-.+
T Consensus 235 ~~l~~~L~~~-GI~i~~~~~v~~i~~~~~~----~~~v~~---~~g~--~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 235 KELTKQLRAN-GINIMTNENPAKVTLNADG----SKHVTF---ESGK--TLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHc-CCEEEcCCEEEEEEEcCCc----eEEEEE---cCCC--EEEcCEEEEeeCCCc
Confidence 4455566664 9999999999999765333 223333 2344 689999999999443
No 335
>PRK14694 putative mercuric reductase; Provisional
Probab=96.90 E-value=0.012 Score=64.96 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
-.|+|||+|..|+-.|..|++.| +|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 47999999999999999999999 99999864
No 336
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.86 E-value=0.0087 Score=61.91 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=30.3
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-----CeEEEEecCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-----TVAVITKAEP 121 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-----~V~vlEk~~~ 121 (647)
...|||||||||++|++.|..|...- +|+|+|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 34799999999999999999988643 8999998743
No 337
>PRK07846 mycothione reductase; Reviewed
Probab=96.85 E-value=0.012 Score=64.43 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=29.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-+|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 47999999999999999999999 999999865
No 338
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.84 E-value=0.0013 Score=68.14 Aligned_cols=39 Identities=23% Similarity=0.463 Sum_probs=33.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-C--eEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-T--VAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~--V~vlEk~~~~~g~ 125 (647)
...+|+|||||++||++|++|++++ + |+|+|+.+..||.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 4579999999999999999999998 5 5679999877664
No 339
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.82 E-value=0.0064 Score=62.15 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=77.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-..+|||+|..||-.+---.+.| +|+++|-.+..++. .|.
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~--------------------------------mD~------- 252 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV--------------------------------MDG------- 252 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc--------------------------------cCH-------
Confidence 46899999999998888888999 99999975533210 111
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
++...+.+-+.+ .|++|+.++.|+....+.+|
T Consensus 253 -----------------------------------------------Eisk~~qr~L~k-QgikF~l~tkv~~a~~~~dg 284 (506)
T KOG1335|consen 253 -----------------------------------------------EISKAFQRVLQK-QGIKFKLGTKVTSATRNGDG 284 (506)
T ss_pred -----------------------------------------------HHHHHHHHHHHh-cCceeEeccEEEEeeccCCC
Confidence 223333344444 49999999999999988765
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.| -+.+.+..+++..+++||.+.+|+|-.+
T Consensus 285 ---~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 285 ---PV-EIEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred ---ce-EEEEEecCCCceeEEEeeEEEEEccCcc
Confidence 33 4777888899999999999999999665
No 340
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.81 E-value=0.011 Score=64.87 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..|++.| +|+++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999998 699998753
No 341
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.75 E-value=0.012 Score=64.26 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..|++.| +|+|+++.+
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 37999999999999999999999 999999865
No 342
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.74 E-value=0.0013 Score=66.23 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=36.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCCcccc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNY 128 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G~V~vlEk~~~~~g~s~~ 128 (647)
..+|.|||+|++||+||+.|+++-+|+|+|.+...||++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANT 48 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccce
Confidence 45899999999999999999998899999999988887654
No 343
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.72 E-value=0.01 Score=65.40 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEec---------CCCeEEEEEcCeEEECCCccc
Q 006397 222 EAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV---------ETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 222 ~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~---------~~G~~~~i~A~~VVlAtGg~~ 281 (647)
+.+.+ .||++++++.++++..+ ++ ++.+|.+... ..|+..++.+|.||+|+|-..
T Consensus 337 ~~~~~-~GV~i~~~~~~~~i~~~-~g---~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 337 SNAHE-EGVEREFNVQTKEFEGE-NG---KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred HHHHH-cCCeEEeccCceEEEcc-CC---EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCC
Confidence 33445 49999999999999754 55 7888876421 124556899999999999554
No 344
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.71 E-value=0.0047 Score=66.57 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=35.5
Q ss_pred ceeEeCCCCccc-ccCcccccccccCCCCCC-CccC-chhhHHHHHHHHHHHHHHHH
Q 006397 437 GGVRAGLQGETN-VRGLYVAGEVACTGLHGA-NRLA-SNSLLEALVFARRAVQPSID 490 (647)
Q Consensus 437 GGi~vD~~~~T~-ipGLyAaGe~a~gG~~Ga-~rl~-g~sl~~a~v~G~~Ag~~a~~ 490 (647)
|.|.||++++|+ .+++||+||++. -.+.. .+.+ .-....+...+++++..+..
T Consensus 254 g~i~v~~~~~~~~~~~v~a~GD~~~-~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 254 GAVLVDERGGTSKDPDVYAAGDVAE-IPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred CCEEEccccccCCCCCEEeccceEe-eecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 559999999998 999999999972 22211 1111 22234566778888877764
No 345
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.70 E-value=0.0098 Score=62.93 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=28.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-C-eEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~~ 120 (647)
-.|+|||+|..|+-+|..|.+.| + |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36999999999999999999999 6 99998753
No 346
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.69 E-value=0.002 Score=67.90 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=33.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
+..|+|||||+||++||.+|-+.| +|+|+|.....||
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 458999999999999999999888 8999999887666
No 347
>PRK13748 putative mercuric reductase; Provisional
Probab=96.69 E-value=0.017 Score=65.38 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=28.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
-.|+|||||..|+-.|..|++.| +|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 37999999999999999999999 99999974
No 348
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.68 E-value=0.012 Score=66.11 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=29.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..|++.| +|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 47999999999999999999999 999999864
No 349
>PLN02546 glutathione reductase
Probab=96.63 E-value=0.021 Score=63.94 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-+|+|||||..|+-.|..+++.| +|+|+++.+
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 47999999999999999999999 999999865
No 350
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.57 E-value=0.024 Score=62.93 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=28.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
+|+|||||..|+-.|..|++.| +|+|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999 99999863
No 351
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.55 E-value=0.028 Score=61.62 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||||..|+-.|..|++.| +|+|+++.+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 47999999999999999999999 999999864
No 352
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.54 E-value=0.003 Score=68.27 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.6
Q ss_pred cccEEEECCcHHHHHHHHHHH-hcC-CeEEEEecCCCCCc
Q 006397 88 YFDFSVIGSGVAGLCYALEVA-KHG-TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la-~~G-~V~vlEk~~~~~g~ 125 (647)
...|+||||||||+.||.+|. +.| +|.|+||.+.++|.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGL 78 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGL 78 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccE
Confidence 357999999999999999764 678 99999999987653
No 353
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.50 E-value=0.017 Score=61.16 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccccc
Q 006397 216 IERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHI 283 (647)
Q Consensus 216 ~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 283 (647)
+.....+.+++ .||+++.++.|+++..+ +|.+. +|+. .|.++.||.|+|-.+..
T Consensus 211 l~~~a~~~L~~-~GV~v~l~~~Vt~v~~~---------~v~~~---~g~~-~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 211 LSKYAERALEK-LGVEVLLGTPVTEVTPD---------GVTLK---DGEE-EIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHHHHH-CCCEEEcCCceEEECCC---------cEEEc---cCCe-eEecCEEEEcCCCcCCh
Confidence 33444445555 59999999999999643 35553 3443 69999999999977643
No 354
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.46 E-value=0.027 Score=66.95 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
-.|+|||||..|+-+|..+.+.| +|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 47999999999999999999999 99999875
No 355
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.44 E-value=0.023 Score=61.70 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
..+.+.+++ .||+++.++.|.++..+ ++.+ .+|+ ++.+|.||+|+|-.+
T Consensus 232 ~~~~~~L~~-~gV~v~~~~~v~~v~~~---------~v~~---~~g~--~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 232 KYGQRRLRR-LGVDIRTKTAVKEVLDK---------EVVL---KDGE--VIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHH-CCCEEEeCCeEEEEeCC---------EEEE---CCCC--EEEccEEEEccCCCC
Confidence 334455555 49999999999988532 2333 3455 689999999998443
No 356
>PLN02976 amine oxidase
Probab=96.44 E-value=0.004 Score=74.40 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=35.8
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
...+||+|||+|++|+.+|+.|++.| +|+|+|+....||.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 34589999999999999999999999 99999998776664
No 357
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.021 Score=57.65 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=37.7
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcC
Q 006397 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 271 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~ 271 (647)
.|.++++..+|++|+.+..-+++.-++ . +|.|..+.|..+|+.+.+.=.
T Consensus 394 VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~---kV~Gl~Y~dr~sge~~~l~Le 442 (520)
T COG3634 394 VLQDKLRSLPNVTIITNAQTTEVKGDG-D---KVTGLEYRDRVSGEEHHLELE 442 (520)
T ss_pred HHHHHHhcCCCcEEEecceeeEEecCC-c---eecceEEEeccCCceeEEEee
Confidence 455667777899999999999998653 2 899999999888876554433
No 358
>PLN03000 amine oxidase
Probab=96.33 E-value=0.0043 Score=71.53 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=35.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
..||+|||||++|+.+|..|++.| +|+|+|+....+|.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 579999999999999999999999 99999998877764
No 359
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.23 E-value=0.07 Score=55.70 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=28.2
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
....|||+|+|-+|.+..-.+-..- +|+||.-..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 4568999999999999988887766 899998543
No 360
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.18 E-value=0.037 Score=58.61 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=75.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVV 166 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~ 166 (647)
.--|+|||+|..|+-+|-.|...+ +|+++++.+.+-- . .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------------------------------------~---l- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------------------------------------R---L- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------------------------------------h---h-
Confidence 345999999999999999999989 9999998653210 0 0
Q ss_pred HHhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCC
Q 006397 167 CTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLD 246 (647)
Q Consensus 167 ~~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~ 246 (647)
| +..+.+.+.+.+++ .||+++.++.+.++..+.+
T Consensus 253 -----------------f----------------------------~~~i~~~~~~y~e~-kgVk~~~~t~~s~l~~~~~ 286 (478)
T KOG1336|consen 253 -----------------F----------------------------GPSIGQFYEDYYEN-KGVKFYLGTVVSSLEGNSD 286 (478)
T ss_pred -----------------h----------------------------hHHHHHHHHHHHHh-cCeEEEEecceeecccCCC
Confidence 0 11233344445555 5999999999999998877
Q ss_pred CCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 247 GPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 247 g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
| +++-|.+. +|+ ++.||.||+.+|..+.
T Consensus 287 G---ev~~V~l~---dg~--~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 287 G---EVSEVKLK---DGK--TLEADLVVVGIGIKPN 314 (478)
T ss_pred C---cEEEEEec---cCC--EeccCeEEEeeccccc
Confidence 7 77777664 454 7999999999997763
No 361
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.07 E-value=0.0071 Score=65.52 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=33.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
-.|.|||||||||++|..|++.| +|++.|+.+..+|
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 68999999999999999999999 9999999887654
No 362
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.76 E-value=0.075 Score=63.95 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=37.6
Q ss_pred HHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 224 VVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 224 ~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
+++ .||+++.++.++++..+ + ++.+|.+... +|+..++.+|.|+++.|-.++
T Consensus 361 L~~-~GV~i~~~~~v~~i~g~--~---~v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 361 ARE-LGIEVLTGHVVAATEGG--K---RVSGVAVARN-GGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred HHH-cCCEEEcCCeEEEEecC--C---cEEEEEEEec-CCceEEEECCEEEEcCCcCch
Confidence 444 49999999999998643 3 5677776532 344457999999999996553
No 363
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.12 Score=53.17 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=72.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCccccccCCeeeecCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVC 167 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~ 167 (647)
-||+|||||-+.+-.|+.|++.+ +|.|+=|.+....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------- 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------- 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------------------------------------------
Confidence 49999999999999999999999 8999988654211
Q ss_pred HhhHHHHHHHHHcCCccccCCCCcccccccCCccccceeecCCCcHHHHHHHHHHHHHcCCCcEEEcceEEEEEEecCCC
Q 006397 168 TEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDG 247 (647)
Q Consensus 168 ~~~~~~~~~l~~~G~~~~~~~~g~~~~~~~gg~~~~r~~~~~~~~g~~~~~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g 247 (647)
...+.+.+++..++.+++++.+.++.-+
T Consensus 181 -------------------------------------------------~~~~~~~l~~~~~i~~~~~~~i~ei~G~--- 208 (305)
T COG0492 181 -------------------------------------------------EEILVERLKKNVKIEVLTNTVVKEILGD--- 208 (305)
T ss_pred -------------------------------------------------CHHHHHHHHhcCCeEEEeCCceeEEecC---
Confidence 0123344555458999999999999754
Q ss_pred CCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 248 PDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 248 ~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.+.+|.+.+.. |+...+..+.|.++.|...
T Consensus 209 ---~v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 209 ---DVEGVVLKNVK-GEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred ---ccceEEEEecC-CceEEEEeceEEEecCCCC
Confidence 25678887755 6677899999999999655
No 364
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.49 E-value=0.15 Score=58.67 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..+.+.| +|+|+.+..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999999 599998754
No 365
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.34 E-value=0.21 Score=52.09 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHc--CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006397 215 EIERALLEAVVS--DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 215 ~~~~~L~~~~~~--~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 278 (647)
.+-..|+++-.. .+++.++..++|..+...++| + .-+.+.+..+|+..++..|+||+|||
T Consensus 276 ~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g---~-~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 276 EIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDG---R-YRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred HHHHHHHHHHhcCCCCCeeeccccceeeeecCCCc---e-EEEEEeeccCCCceEEEeeEEEEecc
Confidence 344555555322 368999999999999887666 5 45666666788888999999999999
No 366
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.021 Score=58.56 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.8
Q ss_pred ccEEEECCcHHHHHHHHHHHhc--C-CeEEEEecCCCCCcc
Q 006397 89 FDFSVIGSGVAGLCYALEVAKH--G-TVAVITKAEPHESNT 126 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~--G-~V~vlEk~~~~~g~s 126 (647)
..|+|||+||||+.+|..|-++ + +|.|+||.+.+.|-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLv 61 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLV 61 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccccee
Confidence 3799999999999999999885 4 999999999877633
No 367
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.06 E-value=0.093 Score=52.21 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=31.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhc----C----CeEEEEecCCCCCccccccCCee
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKH----G----TVAVITKAEPHESNTNYAQGGVS 134 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~----G----~V~vlEk~~~~~g~s~~a~Ggi~ 134 (647)
..+|+|||+|+.||++|+.+.+. . +|.|++-.....- +++...|+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T-~s~~~AGl~ 56 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT-TSDVAAGLF 56 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc-cccccccee
Confidence 35899999999999999887762 2 6778776554433 333333443
No 368
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.87 E-value=0.24 Score=52.59 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
.+.+.+++ .||+++.++.++++. ++ ++.+ .+|+ .+.+|.||+|+|..+
T Consensus 196 ~~~~~l~~-~gV~v~~~~~v~~i~---~~------~v~~---~~g~--~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 196 LVLRLLAR-RGIEVHEGAPVTRGP---DG------ALIL---ADGR--TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHH-CCCEEEeCCeeEEEc---CC------eEEe---CCCC--EEecCEEEEccCCCh
Confidence 34445555 499999999998873 22 2333 2454 689999999999654
No 369
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.85 E-value=0.59 Score=48.90 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=32.7
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
+..+|++.||-||+-|+.|+.|.+.+ +++.+||.+..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 45689999999999999999999987 89999998743
No 370
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.79 E-value=0.26 Score=55.71 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=27.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
.-.|+|||+|..|+-+|..+.+.| +|+|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 347999999999999999888888 588887754
No 371
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.62 E-value=0.04 Score=59.24 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=32.1
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
+.+|||||+|.|..-+..|-.|++.| +|+.+|+++..||.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~ 42 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGE 42 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGG
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCc
Confidence 35799999999999999999999999 99999999987663
No 372
>PRK13984 putative oxidoreductase; Provisional
Probab=94.49 E-value=0.32 Score=55.46 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=33.6
Q ss_pred CcEEEcceEEEEEEecCCCCCceEEEEEEEec--------------CCCeEEEEEcCeEEECCCccc
Q 006397 229 NISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--------------ETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 229 gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~--------------~~G~~~~i~A~~VVlAtGg~~ 281 (647)
||++++++.++++..+ ++ ++.++.+.+. .+|+...+.+|.||+|.|-.+
T Consensus 476 GV~i~~~~~~~~i~~~-~g---~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 476 GVVIYPGWGPMEVVIE-ND---KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred CCEEEeCCCCEEEEcc-CC---EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 8888888877777553 44 6777655321 123456799999999999554
No 373
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.42 E-value=0.04 Score=63.47 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=35.0
Q ss_pred cccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 86 ~~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
..-..|.|||+|||||.||-.|-+.| .|+|.||....+|
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 34578999999999999999999999 9999999987654
No 374
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.29 E-value=0.37 Score=53.26 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=27.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..+.+.| +|+++|..+
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~ 317 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMP 317 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 47999999999999988888887 699998764
No 375
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.23 Score=47.32 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=43.0
Q ss_pred HHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCC
Q 006397 219 ALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASG 278 (647)
Q Consensus 219 ~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 278 (647)
.+.+++++.++|++++++.+++..-+ .+ .+.|+.+.+..+|+...+..+-+..+.|
T Consensus 197 ~Mq~ra~~npnI~v~~nt~~~ea~gd-~~---~l~~l~ikn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 197 IMQQRAEKNPNIEVLYNTVAVEALGD-GK---LLNGLRIKNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred HHHHHHhcCCCeEEEechhhhhhccC-cc---cccceEEEecccCcccccccceeEEEec
Confidence 34566667789999999998888755 22 6778888888889877788777776665
No 376
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.06 E-value=0.045 Score=55.09 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=30.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
.-|.|||||.||.-||+.++++| .|.|.|-.+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 46899999999999999999999 9999998764
No 377
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.94 E-value=0.47 Score=56.42 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhc-C--CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~-G--~V~vlEk~~ 120 (647)
.-.|+|||||..|+-+|..+.+. | +|+|+.+..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35799999999999999998876 7 799999764
No 378
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.71 E-value=0.051 Score=59.58 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=37.4
Q ss_pred ceeEeCCCCcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 437 GGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 437 GGi~vD~~~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
|-|.+|.+++|++|||||+|||. .|-.| + +..++..++.++.++.+++..
T Consensus 374 G~V~~d~~~~T~ipGvyAaGDi~-~Gp~g---v----I~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 374 GRVLSSASGADTEPGLYVVGWLK-RGPTG---I----IGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred ceEEeCCCCccCCCCEEEeeeEe-cCCCC---e----eeecHhhHHHHHHHHHHHHHc
Confidence 67888888899999999999998 34332 3 334455577888888887644
No 379
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.99 E-value=0.66 Score=55.05 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhc-C--CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~-G--~V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..+.+. | +|+|+.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999998877 5 799999864
No 380
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=91.97 E-value=0.098 Score=51.07 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred HcCCCCCCCcEEEeeeeceecceeEeCCCCcccccCcccccccc
Q 006397 416 KYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVA 459 (647)
Q Consensus 416 ~~G~d~~~~~i~v~p~~~~~~GGi~vD~~~~T~ipGLyAaGe~a 459 (647)
+.|+.|+.+..-..+......||++||..++|+.|.+|||||+.
T Consensus 277 atgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvc 320 (334)
T KOG2755|consen 277 ATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVC 320 (334)
T ss_pred ccccCcCceEEecChhhhccccCeeehhhccccccceeeeccee
Confidence 44666766633344555567899999999999999999999984
No 381
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.73 E-value=0.16 Score=49.61 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=27.0
Q ss_pred EEEECCcHHHHHHHHHHHhcC---CeEEEEecCC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG---TVAVITKAEP 121 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G---~V~vlEk~~~ 121 (647)
.+|||||+||.+||-.|+..- .|+|+...+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 589999999999999999865 7999987654
No 382
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.50 E-value=0.68 Score=51.98 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.9
Q ss_pred HHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCcccc
Q 006397 220 LLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282 (647)
Q Consensus 220 L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 282 (647)
|...+.+ .|++++.+....++..+ + ++.++... +|. .+.|+.||+|+|-..+
T Consensus 193 L~~~le~-~Gi~~~l~~~t~ei~g~--~---~~~~vr~~---DG~--~i~ad~VV~a~GIrPn 244 (793)
T COG1251 193 LRRKLED-LGIKVLLEKNTEEIVGE--D---KVEGVRFA---DGT--EIPADLVVMAVGIRPN 244 (793)
T ss_pred HHHHHHh-hcceeecccchhhhhcC--c---ceeeEeec---CCC--cccceeEEEecccccc
Confidence 3444555 49999998887777653 3 67788764 454 5899999999997665
No 383
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.46 E-value=0.32 Score=44.34 Aligned_cols=30 Identities=30% Similarity=0.636 Sum_probs=28.3
Q ss_pred EEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
|+|||+|..|+..|..|++.| +|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 689999999999999999999 999999876
No 384
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.28 E-value=0.29 Score=45.08 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||||..|.+.|..|+++| +|.|..+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 3789999999999999999999 999998753
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.17 E-value=0.31 Score=53.87 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=29.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|.+|+.+|..|+++| +|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 36999999999999999999999 999999754
No 386
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=0.54 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE 123 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~ 123 (647)
.-+|||+|-.+|-||-.|+--| .|+|+-|+-...
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr 234 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR 234 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc
Confidence 5799999999999999999999 999988865543
No 387
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=89.96 E-value=1.3 Score=46.69 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=33.0
Q ss_pred CCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 227 DPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 227 ~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
+.+|++..++.|.++.-+ . +.+. ..+|+...|....+|.|||-.+
T Consensus 285 ~~~I~~~~~t~Vk~V~~~------~---I~~~-~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 285 RDGIDLDTGTMVKKVTEK------T---IHAK-TKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred hccceeecccEEEeecCc------E---EEEE-cCCCceeeecceEEEecCCCCC
Confidence 369999999999887532 2 2332 2478888899999999998554
No 388
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.74 E-value=0.32 Score=46.67 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
...|+|||+|.++.-+|..|++.| +|.++-|.+.
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 468999999999999999999999 9999998753
No 389
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.71 E-value=0.3 Score=53.63 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
.|+|||.|++|+++|..|+++| +|++.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 4899999999999999999999 9999998754
No 390
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=89.65 E-value=0.28 Score=49.30 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=29.3
Q ss_pred ccccEEEECCcHHHHHHHHHHHhc-C--CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKH-G--TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~-G--~V~vlEk~~ 120 (647)
.++.|+|||||.+|++.|..+.++ | +|.|||-..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 579999999999999999988764 4 899999654
No 391
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=89.63 E-value=0.28 Score=52.81 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006397 98 VAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 98 ~AGl~aA~~la~~G-~V~vlEk~~~~~g~s 126 (647)
+|||+||++|+++| +|+|+|+....||..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcce
Confidence 69999999999999 999999999877743
No 392
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.60 E-value=0.39 Score=47.12 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=29.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
+++|||+|-.|...|..|.+.| .|+++|+.+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 5899999999999999999999 999999876
No 393
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.19 E-value=0.38 Score=45.48 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=26.1
Q ss_pred EEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
|.|||+|..|...|..++..| +|+++|..+
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 789999999999999999999 999999754
No 394
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=88.66 E-value=0.55 Score=49.74 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=35.0
Q ss_pred eCCCCccc-ccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 441 AGLQGETN-VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 441 vD~~~~T~-ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
++...+|. +||||+||+.+ |+.| ..||...|.+||.+|+.++++
T Consensus 346 l~~~l~~k~~~~lf~AGqi~--G~~G--------y~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 346 LLNTLETKKIPGLFFAGQIN--GTEG--------YEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp BBTTSBBSSSBTEEE-GGGG--TB-S--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred cccceEECCCCCceECCCCc--chhH--------HHHHHHHHHHHHHHHHHHHcC
Confidence 44577875 99999999997 6644 689999999999999998754
No 395
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.43 E-value=0.58 Score=47.03 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=32.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
...|+|||.|..|..+|..|++.| +++|+|......+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~s 68 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVT 68 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccc
Confidence 468999999999999999999999 8999998776433
No 396
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.05 E-value=0.42 Score=40.54 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=29.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|||||..|..-+..|.+.| +|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 357999999999999999999999 999998763
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=87.93 E-value=0.73 Score=41.24 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-C-eEEEEec
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-T-VAVITKA 119 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~ 119 (647)
...|+|||+|.+|-.++..|++.| + |.|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 457999999999999999999999 4 9999875
No 398
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=87.80 E-value=0.65 Score=44.87 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=28.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
-.|+|||||..|...+..|.+.| +|+|++..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999 99999864
No 399
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.87 E-value=0.6 Score=48.57 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=35.1
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESN 125 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~ 125 (647)
.+|||||||.|.-=...|...++.| +|+=||.+...||+
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 4699999999999999999999999 99999999887653
No 400
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.72 E-value=0.77 Score=41.00 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
..|+|||+|..|...|..|++.| +++|+|.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence 57999999999999999999999 89999987753
No 401
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.48 E-value=0.81 Score=43.99 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=31.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
...|+|||+|..|..+|..|++.| +++|+|.....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 57 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVE 57 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEc
Confidence 468999999999999999999999 69999987543
No 402
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.30 E-value=0.58 Score=47.04 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...+|+|||||.+|..+|.-+.-.| +|+++|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 3569999999999999999999999 999999874
No 403
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.05 E-value=0.8 Score=50.17 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
..|+|||+|.+|+.+|..|+++| +|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999999999999999 999999854
No 404
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.05 E-value=0.99 Score=42.06 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=29.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|+|+|.+|..||..|...| +|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 468999999999999999999999 999999754
No 405
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.01 E-value=0.65 Score=44.07 Aligned_cols=31 Identities=35% Similarity=0.485 Sum_probs=25.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||.|-.|+.+|..+|+.| +|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 4899999999999999999999 999999754
No 406
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=1 Score=46.38 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=34.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g 124 (647)
.|||+|+|.|+.=+..+..|+..| +|+.+|+++..|+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~ 43 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS 43 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence 699999999999999999999999 9999999997654
No 407
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.93 E-value=1.1 Score=44.51 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=33.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g~ 125 (647)
...|+|||+|..|..+|..|++.| +++|+|.+....++
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN 63 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSN 63 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccC
Confidence 468999999999999999999999 89999988765443
No 408
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.81 E-value=1 Score=46.50 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
..|+|||+|..|...|..|++.| +|+++.++.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 36999999999999999999999 999999853
No 409
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.66 E-value=0.84 Score=47.23 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
+|.|||+|..|...|..|+++| +|+++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 5999999999999999999999 999999864
No 410
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.43 E-value=1 Score=43.40 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
...|+|||||-.|...|..|.+.| +|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999999999 99999753
No 411
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.27 E-value=1.1 Score=41.37 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=27.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEE
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVIT 117 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlE 117 (647)
-.|+|||||..|..-|..|.+.| +|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 57999999999999999999999 999995
No 412
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.23 E-value=0.92 Score=48.16 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=29.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
..+|+|||+|.+|+.+|..|...| +|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 457999999999999999999999 999999753
No 413
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.06 E-value=1.2 Score=41.82 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=29.3
Q ss_pred EEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
|+|||+|..|...|..|++.| +++|+|.+...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVE 35 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEc
Confidence 899999999999999999999 79999987653
No 414
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=84.84 E-value=0.45 Score=49.44 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=35.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCCCCcc
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNT 126 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~~~g~s 126 (647)
.+|||+|+|.|..=+..+..|+..| +|+.+||++..||.+
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~s 43 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGES 43 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccc
Confidence 3599999999999999999999999 999999999876544
No 415
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.70 E-value=1.3 Score=45.83 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
..|+|||+|..|...|..|++.| +|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 46999999999999999999999 999999864
No 416
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.49 E-value=1.2 Score=46.54 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
...|+|||+|..|..+|..|++.| +++|+|......+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~s 62 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWS 62 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccccc
Confidence 467999999999999999999999 8999999876443
No 417
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.09 E-value=1.2 Score=38.29 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.1
Q ss_pred EEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
|+|+|.|..|...+..|.+.+ +|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 799999999999999999988 899999875
No 418
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.08 E-value=1.3 Score=46.48 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=31.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
...|+|||+|..|..+|..|++.| +++|+|.+...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVE 60 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccC
Confidence 468999999999999999999999 89999997653
No 419
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.86 E-value=1.1 Score=49.44 Aligned_cols=33 Identities=30% Similarity=0.325 Sum_probs=30.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|+|+|++|+.|+..|...| +|.++|..+
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999 999999764
No 420
>PRK08328 hypothetical protein; Provisional
Probab=83.78 E-value=1.4 Score=43.48 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
...|+|||+|..|..+|..|++.| +++|+|.+...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 467999999999999999999999 89999877654
No 421
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=83.73 E-value=1.4 Score=42.70 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=31.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
...|+|||+|..|..+|..|++.| +++|+|.+...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 468999999999999999999999 79999987653
No 422
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=83.64 E-value=1.4 Score=42.52 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
+..|+|||.|..|..+|..|++.| +++|+|.+...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD 57 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEc
Confidence 468999999999999999999999 89999987653
No 423
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=83.45 E-value=1.6 Score=39.32 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
.|+|||.|..|...|..|++.| +++|+|.......
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~ 37 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELS 37 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcc
Confidence 3899999999999999999999 8999998776443
No 424
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.08 E-value=1.3 Score=45.19 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..+++.| +|++++...
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5999999999999999999999 999999653
No 425
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.92 E-value=1.3 Score=45.19 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=28.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~ 119 (647)
..|+|||+|.+|.++|+.|++.| +|+|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 47999999999999999999999 79999875
No 426
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.87 E-value=1.4 Score=47.23 Aligned_cols=33 Identities=24% Similarity=0.114 Sum_probs=29.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.-.|+|+|.|+.|+.+|..|...| +|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 347999999999999999999999 999998764
No 427
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.65 E-value=1.5 Score=43.63 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=31.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
...|+|||.|..|..+|..|+..| +++|+|.+...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVS 68 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEC
Confidence 468999999999999999999999 89999987654
No 428
>PRK08223 hypothetical protein; Validated
Probab=82.64 E-value=1.7 Score=44.00 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=32.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
...|+|||.|..|..+|..|+..| ++.|+|.+....+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~S 65 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELR 65 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchh
Confidence 578999999999999999999999 8999998876433
No 429
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.52 E-value=1.5 Score=44.93 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=28.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..|++.| +|+++|+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 4899999999999999999999 999999754
No 430
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=82.45 E-value=0.78 Score=47.24 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=32.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhc----C-CeEEEEecCCCCCc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKH----G-TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~----G-~V~vlEk~~~~~g~ 125 (647)
+..+-|||+|.|||++|..|-+. | ++-|+|.-+..||+
T Consensus 22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS 64 (587)
T COG4716 22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS 64 (587)
T ss_pred cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence 45688999999999999999875 4 89999998876653
No 431
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.39 E-value=1.6 Score=45.00 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=27.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEe
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITK 118 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk 118 (647)
.|+|||+|..|...|..|++.| +|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4899999999999999999999 9999987
No 432
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=81.90 E-value=1.6 Score=46.05 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=29.7
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
.+|+|||+|-.|..+|..|+++| +|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 37999999999999999999999 999999974
No 433
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.71 E-value=1.7 Score=44.92 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=28.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC---CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~ 120 (647)
.|.|||+|..|.++|+.|+.+| .|+++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5899999999999999999998 699999754
No 434
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.44 E-value=1.7 Score=44.62 Aligned_cols=30 Identities=20% Similarity=0.560 Sum_probs=27.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
.|+|||+|..|...|..|++.| +|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999 99999984
No 435
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.29 E-value=1.5 Score=46.26 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
.|+|+|+|+.||.++..+...| +|+++|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 5999999999999988888888 677777644
No 436
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=81.25 E-value=0.7 Score=46.90 Aligned_cols=33 Identities=33% Similarity=0.739 Sum_probs=31.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
+|||+|||||.||++||+.|+++| +++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 589999999999999999999999 999999865
No 437
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=81.19 E-value=2 Score=41.83 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=33.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
+.-|+|||-|..|..++-.|++.| +++|+|.....-.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT 68 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT 68 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc
Confidence 467999999999999999999999 9999999886433
No 438
>PRK04148 hypothetical protein; Provisional
Probab=81.13 E-value=1.2 Score=39.55 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=28.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
..+++||.| .|...|..|++.| +|+.+|..+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 469999999 9999999999999 999999765
No 439
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.90 E-value=1.7 Score=44.46 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=29.0
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..++..| .|+++|..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 6899999999999999999999 999999764
No 440
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.87 E-value=1.7 Score=45.43 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=28.8
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|-.||+.|.-+|+.| .|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5889999999999999999999 999999764
No 441
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.46 E-value=1.9 Score=44.73 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|..-|..++..| +|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 5999999999999999999999 999999754
No 442
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.35 E-value=2.6 Score=40.47 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=32.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
+..|+|||.|..|..+|..|+..| +++|+|......
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~ 56 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVST 56 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCCh
Confidence 478999999999999999999999 899999876543
No 443
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=80.32 E-value=2.3 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=29.1
Q ss_pred ccccEEEECCcH-HHHHHHHHHHhcC-CeEEEEec
Q 006397 87 KYFDFSVIGSGV-AGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 87 ~~~DVvIIGgG~-AGl~aA~~la~~G-~V~vlEk~ 119 (647)
....|+|||+|- +|..+|..|.++| +|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357899999996 6999999999999 99999975
No 444
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.20 E-value=2 Score=42.20 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=31.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
...|+|||.|..|..+|..|++.| +++|+|......
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 58 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVEL 58 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcC
Confidence 468999999999999999999999 899999876533
No 445
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.82 E-value=2 Score=44.05 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=28.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..+++.| +|+++++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5999999999999999999999 999999753
No 446
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.67 E-value=2 Score=42.21 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=32.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
...|+|||.|..|..+|..|++.| +++|+|......
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~ 48 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCV 48 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECc
Confidence 468999999999999999999999 899999877543
No 447
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.64 E-value=2 Score=44.02 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=28.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..+++.| +|+++|+.+
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5899999999999999999999 999999754
No 448
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=79.63 E-value=1.9 Score=43.26 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=36.6
Q ss_pred ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhh
Q 006397 447 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHK 492 (647)
Q Consensus 447 T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~ 492 (647)
--.||||++|=.+ ..+||.+|+|- -+...+.+|++||+.+.+.+
T Consensus 210 ~~~~g~~~~gm~~-~~~~~~~rmgp-~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 210 EVVPNLYVAGMAV-AAVHGLPRMGP-IFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cccCCEEEechhh-hhhcCCCCcCc-hHHHHHHhhHHHHHHHHHHh
Confidence 3699999999988 69999999974 45667788999999887754
No 449
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=79.47 E-value=2.5 Score=41.46 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=28.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-C---eEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-T---VAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~---V~vlEk~~ 120 (647)
..|+|+|+|.+|..+|..|.+.| + |.|+++..
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 47999999999999999999999 7 88999864
No 450
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.00 E-value=2.7 Score=43.04 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=28.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-C-eEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~~ 120 (647)
..++|+|+|.+|.++|+.|++.| + |+|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46899999999999999999999 5 99998753
No 451
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=78.87 E-value=2.8 Score=37.76 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=27.9
Q ss_pred cEEEECC-cHHHHHHHHHHHhcC---CeEEEEecC
Q 006397 90 DFSVIGS-GVAGLCYALEVAKHG---TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGg-G~AGl~aA~~la~~G---~V~vlEk~~ 120 (647)
.|.|||+ |..|.+.|+.|...+ +++|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 999999999999988 599999753
No 452
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.64 E-value=2.5 Score=42.74 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
.|+|+|+|.++.++++.|++.| +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 6999999999999999999999 599998854
No 453
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=78.56 E-value=3 Score=40.00 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=31.5
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 121 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~ 121 (647)
.+..|+|||.|..|+..|..|+..| +++|+|....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 3578999999999999999999999 8999998765
No 454
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=78.45 E-value=2.6 Score=41.57 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.1
Q ss_pred EEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 91 FSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 91 VvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
|+|||+|..|+..+..|+..| +++|+|.+....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~ 36 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDV 36 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcc
Confidence 899999999999999999999 899999887643
No 455
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=78.33 E-value=2.4 Score=43.12 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~ 119 (647)
..|+|+|+|.|+-++++.|++.| +|.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46999999999999999999999 68899874
No 456
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=77.98 E-value=1.8 Score=41.63 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=37.3
Q ss_pred CcccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 445 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 445 ~~T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
.+--.||||++|=.+ .-+||++|+|- -+...+.+|+.||+.+.+.++
T Consensus 214 T~eV~pgL~vaGMa~-~av~G~pRMGP-iFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 214 TGEVYPGLYVAGMAV-NAVHGLPRMGP-IFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cccccCCeEeehhhH-HhhcCCcccCc-hhhhhhhchHHHHHHHHHHhh
Confidence 345789999999988 48999999974 355567789999988877653
No 457
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.90 E-value=2.2 Score=46.58 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=28.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|+|+|+|..|+++|..|++.| +|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5899999999999999999999 999998654
No 458
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.88 E-value=2.5 Score=43.03 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..+++.| +|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 5999999999999999999999 999998653
No 459
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=77.68 E-value=2.7 Score=42.78 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~ 119 (647)
..|+|||+|-++-++++.|++.| +|.|+.|.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 47999999999999999999999 69999874
No 460
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=77.29 E-value=2.7 Score=42.76 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
.|+|||+|.-|..+|..|+..| +++++|.+....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~ 36 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSY 36 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc
Confidence 3899999999999999999999 899999876543
No 461
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.10 E-value=2.9 Score=43.84 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
.|.|||+|..|...|..|++.| +|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999 99999974
No 462
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=77.03 E-value=2.9 Score=44.13 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
+..|+|||.|..|..+|..|+..| +++|+|......+
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~s 66 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLS 66 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccc
Confidence 468999999999999999999999 8999998875433
No 463
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=76.62 E-value=2.9 Score=46.00 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=29.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|+|+|.+|+.++..|...| +|+++|...
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 468999999999999999999999 999999764
No 464
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=76.41 E-value=2 Score=46.10 Aligned_cols=32 Identities=44% Similarity=0.782 Sum_probs=30.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
|||+|||+|++|+++|+.+++.| +|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 69999999999999999999999 999999875
No 465
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=76.00 E-value=2.7 Score=42.15 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=37.3
Q ss_pred ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhh
Q 006397 447 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKK 493 (647)
Q Consensus 447 T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~ 493 (647)
--.||||++|=.+ .-+||.+|+|- -+..-+.+|++||+.+.+.++
T Consensus 211 ~~~~g~~~~gm~~-~~~~~~~rmg~-~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 211 EVYPGLYVAGMAA-NAVHGLPRMGP-IFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred eEcCCEEEeehhh-hhhcCCCccCc-hhHhHHHhHHHHHHHHHHHhh
Confidence 3699999999988 68999999974 456677889999999888764
No 466
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=75.95 E-value=2.9 Score=46.86 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=32.7
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
....|+|||+|.-|+.+|..|+..| +++++|.+...-
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~ 375 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSY 375 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECC
Confidence 3578999999999999999999999 899999876543
No 467
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=75.88 E-value=3.1 Score=44.44 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=30.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|||.|..|..+|..|...| +|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 357999999999999999999999 999999765
No 468
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=75.63 E-value=3.2 Score=44.06 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
...|+|||+|..|..+|..|+..| +++|+|.+....+
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~s 79 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVS 79 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccc
Confidence 468999999999999999999999 8999998875433
No 469
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=75.58 E-value=3.3 Score=48.56 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-C-eEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-T-VAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~-V~vlEk~~ 120 (647)
-.|+|||||..|+-+|..|.+.| + |+|+++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47999999999999999999999 6 99999864
No 470
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=75.52 E-value=3.2 Score=44.45 Aligned_cols=38 Identities=32% Similarity=0.300 Sum_probs=33.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCCc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESN 125 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g~ 125 (647)
...|+|||.|..|..+|..|+..| +++|+|......++
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sN 81 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESN 81 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcc
Confidence 568999999999999999999999 89999987764443
No 471
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=75.05 E-value=3.6 Score=42.41 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=27.2
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEe
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITK 118 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk 118 (647)
.|.|||+|..|...|+.++.+| +|+++|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5899999999999999999988 7999997
No 472
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=74.60 E-value=3.9 Score=39.90 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.5
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
...|+|||||..++.=+..|.+.| +|+|+...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 356999999999999999999999 99999754
No 473
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=74.43 E-value=3.7 Score=43.80 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=32.0
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
....|+|||+|..|..+|..|++.| +++|+|.+...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~ 171 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVD 171 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEec
Confidence 3568999999999999999999999 89999987653
No 474
>PRK06153 hypothetical protein; Provisional
Probab=73.88 E-value=3.2 Score=43.72 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=33.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCCcc
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNT 126 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g~s 126 (647)
...|+|||.|..|..++..|++.| +++|+|.+.....+-
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNL 216 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNA 216 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEeccccc
Confidence 468999999999999999999999 899999887654443
No 475
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=73.69 E-value=4 Score=42.10 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=27.9
Q ss_pred cEEEECCcHHHHHHHHHHHhcC---CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG---TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G---~V~vlEk~~ 120 (647)
.|.|||+|.+|.++|+.|+..| .++|+++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4899999999999999999988 599999854
No 476
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=73.58 E-value=3.6 Score=37.77 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=27.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
..++|+|=|-.|-.+|..|+..| +|+|.|..+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 46999999999999999999999 9999998763
No 477
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=73.45 E-value=3.9 Score=42.14 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=30.1
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPH 122 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~ 122 (647)
.|+|||+|..|+..|..|+..| +++|+|.+...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 3899999999999999999999 89999987754
No 478
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=73.39 E-value=3.4 Score=41.55 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 121 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~ 121 (647)
=|+|||+|..|..++-.|.+.| ++.|+|-...
T Consensus 76 yVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqV 109 (430)
T KOG2018|consen 76 YVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV 109 (430)
T ss_pred EEEEEecCchhHHHHHHHHHhcCceEEEechhhc
Confidence 4899999999999999999999 8999986654
No 479
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.38 E-value=3.9 Score=44.68 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=28.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|+|+|.|.+|+++|..|+++| +|++.|...
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5899999999999999999999 999998654
No 480
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=73.30 E-value=4 Score=41.61 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=30.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHE 123 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~ 123 (647)
.|+|||+|..|+..+..|+..| ++.|+|.+....
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~ 36 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDV 36 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc
Confidence 3899999999999999999999 899999876543
No 481
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=73.12 E-value=4 Score=41.90 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=30.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|||.|.+|..+|..|...| +|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 468999999999999999999999 999999864
No 482
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=72.95 E-value=4.2 Score=42.35 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..|++.| +|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 4899999999999999999999 999998843
No 483
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=72.94 E-value=4.4 Score=41.37 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=28.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~ 120 (647)
..|+|||+|.++.++|..|++.| +|+|+.|..
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46999999999999999999999 799999853
No 484
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=72.94 E-value=4.3 Score=39.02 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=28.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
..|+|+|.|-.|..+|..|.+.| +|++.|..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999 99988753
No 485
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.50 E-value=4.8 Score=41.03 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=28.9
Q ss_pred ccccEEEECCcHHHHHHHHHHHhcC--CeEEEEec
Q 006397 87 KYFDFSVIGSGVAGLCYALEVAKHG--TVAVITKA 119 (647)
Q Consensus 87 ~~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~ 119 (647)
....|+|.|+||.||.+-+.|.-.| +|++.|-.
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 3468999999999999999999889 89998853
No 486
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.48 E-value=4.3 Score=41.98 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..|++.| +|++++...
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5999999999999999999999 999999643
No 487
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.26 E-value=4.1 Score=43.83 Aligned_cols=34 Identities=24% Similarity=0.081 Sum_probs=30.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~~ 121 (647)
...|+|||.|..|..+|..|...| +|+++|..+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 346999999999999999999999 9999997653
No 488
>PRK07411 hypothetical protein; Validated
Probab=72.11 E-value=4.2 Score=43.50 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEPHES 124 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~~~g 124 (647)
...|+|||.|.-|..+|..|+..| +++|+|.+...-+
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~s 76 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSS 76 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEeccc
Confidence 578999999999999999999999 8999998776433
No 489
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=71.92 E-value=5 Score=41.73 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=29.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEecCC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITKAEP 121 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk~~~ 121 (647)
..|.|||+|..|...|+.++..| +|+|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 47999999999999999999988 8999997653
No 490
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=71.71 E-value=8.6 Score=40.45 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCcEEEcceEEEEEEecCCCCCceEEEEEEEecCCCeEEEEEcCeEEECCCccc
Q 006397 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAG 281 (647)
Q Consensus 218 ~~L~~~~~~~~gv~i~~~~~v~~l~~~~~g~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 281 (647)
+.-.+++++ .||.++.+..|.++..+ ++-.+....+|. .++.|.||+|+|--.
T Consensus 397 ~wt~ekir~-~GV~V~pna~v~sv~~~--------~~nl~lkL~dG~--~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 397 QWTIEKIRK-GGVDVRPNAKVESVRKC--------CKNLVLKLSDGS--ELRTDLVVVAVGEEP 449 (659)
T ss_pred HHHHHHHHh-cCceeccchhhhhhhhh--------ccceEEEecCCC--eeeeeeEEEEecCCC
Confidence 344456666 49999999888777554 223333446675 689999999999544
No 491
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=71.67 E-value=4.2 Score=41.67 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=28.5
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||+|..|...|..++..| +|+++|+.+
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 4999999999999999999999 999999754
No 492
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=71.60 E-value=4.4 Score=41.79 Aligned_cols=31 Identities=23% Similarity=0.513 Sum_probs=28.3
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|+|+|..|...|+.|++.| .|+++-|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 4899999999999999999999 898888765
No 493
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=71.57 E-value=4 Score=44.10 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||.|..|+..|..|+++| +|+++|..+
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 5899999999999999999999 999999754
No 494
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.56 E-value=4.4 Score=41.34 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=29.8
Q ss_pred cccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 88 YFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 88 ~~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
...|+|||.|..|...|..|...| +|+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357999999999999999999999 999999853
No 495
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=71.52 E-value=3.9 Score=44.18 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=28.6
Q ss_pred cEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 90 DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
.|.|||.|..|+..|..|++.| +|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 4899999999999999999999 999999754
No 496
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=71.50 E-value=5.7 Score=32.21 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=27.2
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC--CeEEEEe
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG--TVAVITK 118 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G--~V~vlEk 118 (647)
..++|+|.|..|..+|..|.+.+ +|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46999999999999999999984 7888888
No 497
>PLN02661 Putative thiazole synthesis
Probab=71.48 E-value=4 Score=42.70 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=38.8
Q ss_pred ccccCcccccccccCCCCCCCccCchhhHHHHHHHHHHHHHHHHhhhc
Q 006397 447 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKS 494 (647)
Q Consensus 447 T~ipGLyAaGe~a~gG~~Ga~rl~g~sl~~a~v~G~~Ag~~a~~~~~~ 494 (647)
--+||||++|=.+ .-++|.+|+|- -++..+.+|++||+.+.+.++.
T Consensus 284 ev~pgl~~~gm~~-~~~~g~~rmgp-~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 284 EVVPGMIVTGMEV-AEIDGSPRMGP-TFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred cccCCEEEeccch-hhhcCCCccCc-hhHhHHhhhHHHHHHHHHHHcc
Confidence 4699999999887 69999999974 4566788999999999998753
No 498
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=71.43 E-value=3.7 Score=45.01 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=29.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEecC
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~~ 120 (647)
-.|+|||+|..|+-.|..|++.+ +|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 46999999999999999999999 999999854
No 499
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=71.25 E-value=4.2 Score=45.40 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=28.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGgG~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
..|+|+|+|.+|.++|+.|++.| +|+++.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35899999999999999999999 99999863
No 500
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=71.02 E-value=5 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.7
Q ss_pred ccEEEECC-cHHHHHHHHHHHhcC-CeEEEEec
Q 006397 89 FDFSVIGS-GVAGLCYALEVAKHG-TVAVITKA 119 (647)
Q Consensus 89 ~DVvIIGg-G~AGl~aA~~la~~G-~V~vlEk~ 119 (647)
..++|+|| |..|..+|..|++.| +|+++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999997 999999999999999 99999764
Done!