RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 006397
(647 letters)
>gnl|CDD|215436 PLN02815, PLN02815, L-aspartate oxidase.
Length = 594
Score = 1143 bits (2958), Expect = 0.0
Identities = 460/588 (78%), Positives = 499/588 (84%), Gaps = 3/588 (0%)
Query: 63 SPVSENWKSLRT--VPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAE 120
S ++ K + S L D S KYFDF VIGSG+AGL YALEVA++GTVA+ITK E
Sbjct: 2 SAIAATRKPIGAERASSASRLDDESTKYFDFLVIGSGIAGLRYALEVAEYGTVAIITKDE 61
Query: 121 PHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAI 180
PHESNTNYAQGGVSAVL PSDSVESHM+DTIVAGA+LCD+ETVRVVCTEGP+R++ELIA+
Sbjct: 62 PHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAM 121
Query: 181 GASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAID 240
GASFD GEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAV +DPNI+ FEHHFAID
Sbjct: 122 GASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAID 181
Query: 241 LLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAM 300
LLT+ DG VCHG D L+ T EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDG+AM
Sbjct: 182 LLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAM 241
Query: 301 AHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFM 360
AHRAQAV+SNMEFVQFHPTALADEGLPIKP K REN+FLITEAVRGDGGILYNL ERFM
Sbjct: 242 AHRAQAVVSNMEFVQFHPTALADEGLPIKPAKARENAFLITEAVRGDGGILYNLAGERFM 301
Query: 361 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLD 420
PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKP E+ILSHFPNIAAECLK GLD
Sbjct: 302 PLYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREEILSHFPNIAAECLKRGLD 361
Query: 421 ITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 480
IT QPIPVVPAAHYMCGGVR GLQGETNV+GLY AGEVACTGLHGANRLASNSLLEALVF
Sbjct: 362 ITKQPIPVVPAAHYMCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVF 421
Query: 481 ARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRY 540
ARRAVQPSIDH D+SA+ W R V P +L +VM IL T VRKELQ IMW Y
Sbjct: 422 ARRAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRIMWNY 481
Query: 541 VGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 600
VGIVRST L+TAE +++ELEAEWE LF HGW+ T VGLEACEMRNLFC AKLVVSSAL
Sbjct: 482 VGIVRSTERLETAERKLEELEAEWEAILFRHGWKPTMVGLEACEMRNLFCVAKLVVSSAL 541
Query: 601 ARHESRGLHYMVDFPHVEENKRLPTIILPSLV-NCTWSSRQLHKLPVC 647
AR ESRGLHY D+P + E++R PT+I PS+ TWSSR LH+
Sbjct: 542 ARKESRGLHYTTDYPELVESERKPTVIFPSVPTAGTWSSRSLHRPKRG 589
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 605 bits (1561), Expect = 0.0
Identities = 244/543 (44%), Positives = 317/543 (58%), Gaps = 43/543 (7%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 152
+IGSG+AGL AL +A V V+TK ES++ +AQGG++A L DS E H+ DT+
Sbjct: 12 IIGSGLAGLTAALSLAPSFRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLA 71
Query: 153 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 212
AGA LCD+E V + +E P+ I LI +G FDR EDG LHL REGGHS RI+HAAD T
Sbjct: 72 AGAGLCDEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADAT 131
Query: 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 272
G+EI ALL+ V + PNI+V E A+DL+ GV LN E+ F +K
Sbjct: 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIE---DGIGVAGVLVLN-RNGELGTFRAKA 187
Query: 273 TLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKK 332
+LA+GG G +Y TTNP +TGDG+AMA RA A ++++EFVQFHPTAL
Sbjct: 188 VVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTAL---------YI 238
Query: 333 TRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKYVL 392
+ +FLI+EAVRG+G IL N ERFMP Y R ELAPRDVVAR+ID ++K+ V
Sbjct: 239 PQRRAFLISEAVRGEGAILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD-VF 297
Query: 393 LDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGL 452
LDISH P + FP I A CLK G+D T +PIPVVPAAHY GG+ G T++ GL
Sbjct: 298 LDISHIPGDFFERRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGL 357
Query: 453 YVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH---KKSTSIDLSASNWWTRTV 509
Y GEVACTGLHGANRLASNSLLE LVF +RA + + L + + V
Sbjct: 358 YAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRLAPAPREAPTLPVRDDYEENV 417
Query: 510 VPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 569
+ H+ R EL+ +MWRYVGIVR+ L+ A R++ L+ E + Y
Sbjct: 418 LLA-------HD--------RHELRRLMWRYVGIVRTAKGLERAIRRLEPLQQENDEYA- 461
Query: 570 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTIILP 629
+ RNL A L+ +AL R ESRG H+ +D+P + ++
Sbjct: 462 --NFRV--------SNRNLALVALLIARAALLRTESRGAHFRLDYPDTLPEAQRRILVTL 511
Query: 630 SLV 632
+
Sbjct: 512 NDA 514
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 595 bits (1536), Expect = 0.0
Identities = 252/548 (45%), Positives = 327/548 (59%), Gaps = 31/548 (5%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 148
D +IGSG AGL AL +A+H VAV++K E +T YAQGG++AVL +DS+ESH++
Sbjct: 9 CDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVE 68
Query: 149 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN----LHLAREGGHSHHR 204
DT++AGA LCD++ VR + + ++ LI G F E N HL REGGHSH R
Sbjct: 69 DTLIAGAGLCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRR 128
Query: 205 IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTT--LDGPDAVCHGVDTLNVET 262
I+HAAD TG+ ++ L+E + PNI+V E H AIDL+T+ L P G LN
Sbjct: 129 ILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNK 188
Query: 263 QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALA 322
+ V +K +LA+GGA +Y TTNP +A+GDG+AMA RA ++NMEF QFHPT L
Sbjct: 189 ERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRVANMEFNQFHPTCL- 247
Query: 323 DEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQ 382
P + SFLITEA+RG+G L RFMP +DERAELAPRD+VAR+ID +
Sbjct: 248 -----YHP---QARSFLITEALRGEGAYLKLPDGTRFMPDFDERAELAPRDIVARAIDHE 299
Query: 383 LKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 442
+K+ V LDISHKP + I HFP I CL+ G+DIT +PIPVVPAAHY CGGV
Sbjct: 300 MKRLGADCVYLDISHKPADFIRQHFPTIYERCLELGIDITKEPIPVVPAAHYTCGGVMVD 359
Query: 443 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSAS 502
L G T++ GLY GEV+ TGLHGANR+ASNSLLE LV+ R A + + + +
Sbjct: 360 LHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLPKAPMPPTLP 419
Query: 503 NWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEA 562
W V + HN EL+ MW YVGIVR+T L+ A RI L+
Sbjct: 420 AWDESRVTDSDEEVVIQHNW--------HELRLFMWDYVGIVRTTKRLERALHRIRLLQQ 471
Query: 563 EWETYLFEHGWEQTF-VGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENK 621
E + Y F V E+RNL A+L+V A+ R ESRGLHY +D+P +
Sbjct: 472 EIDEYY------ANFRVSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLPEA 525
Query: 622 RLPTIILP 629
PTI+ P
Sbjct: 526 G-PTILSP 532
>gnl|CDD|233018 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the B
protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the pyridine
nucleotide portion of NAD. This model identifies
proteins that cluster as L-aspartate oxidase (a
flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other NadB
but is just one gene away from NadA [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridine
nucleotides].
Length = 488
Score = 496 bits (1279), Expect = e-171
Identities = 237/527 (44%), Positives = 305/527 (57%), Gaps = 41/527 (7%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 148
D VIGSG AGL AL +A G V V++KA E N+ YAQGG++AVL +DS++SH++
Sbjct: 3 CDVVVIGSGAAGLSAALALADQGRVIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVE 62
Query: 149 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 208
DT+ AGA +CD E V V ++ ++ L+ G FDR E G+ L REGGHS+ RI+HA
Sbjct: 63 DTLAAGAGICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHA 122
Query: 209 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 268
AD TGRE+ L++ ++ PNI + E A+DLL GV N ET E
Sbjct: 123 ADATGREVITTLVKKALNHPNIRIIEGENALDLLIE----TGRVVGVWVWNRETVETCHA 178
Query: 269 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 328
+LA+GGAG +Y TTNP ++TGDG+A+A RA + ++EF QFHPTAL
Sbjct: 179 --DAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHPTAL------Y 230
Query: 329 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNE 388
KP+ FLITEAVRG+G L + RFM + R ELAPRD+VAR+ID ++K+
Sbjct: 231 KPRARY---FLITEAVRGEGAYLVDRDGTRFMADFHPRGELAPRDIVARAIDHEMKRGGA 287
Query: 389 KYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETN 448
V LD S E FP I A+CL G+D T +PIPVVPAAHY CGG+ G T
Sbjct: 288 DCVFLDASGI--EAFRQRFPTIYAKCLGAGIDPTREPIPVVPAAHYTCGGISVDDHGRTT 345
Query: 449 VRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRT 508
V GLY GEVACTGLHGANRLASNSLLE LVF A + I + + D+S S W
Sbjct: 346 VPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAE-DISRRPPYASDISTSPPWDE- 403
Query: 509 VVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 568
P+S + + EL+S MW Y GIVR T SL+ A R+ L+ E + Y
Sbjct: 404 --PRSENPDDRVVLQHN----MSELRSFMWDYAGIVRLTKSLERALRRLVMLQQEIDEYE 457
Query: 569 FEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
+RNL AKL+ SAL R ESRG H+ +D+P
Sbjct: 458 ----------------LRNLVQVAKLITRSALMREESRGAHFRLDYP 488
>gnl|CDD|236102 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 492 bits (1269), Expect = e-169
Identities = 240/534 (44%), Positives = 299/534 (55%), Gaps = 48/534 (8%)
Query: 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ 148
D V+GSGVAGL AL + G V V+TKA + +T +AQGG++AVL P DS E+H+
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVA 77
Query: 149 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 208
DT+VAGA LCD + VR + EGP +REL+A+GA FD DG L REGGHS RIVHA
Sbjct: 78 DTLVAGAGLCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHA 137
Query: 209 A-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNV--ETQE- 264
D TG E++RAL AV +DP + + EH A+DLLT DG AV GV TL+V E
Sbjct: 138 GGDATGAEVQRALDAAVRADP-LDIREHALALDLLT--DGTGAVA-GV-TLHVLGEGSPD 192
Query: 265 ---VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 321
V + +LA+GG G +Y +TTNP +TGDG+A+A RA A +S++EFVQFHPT L
Sbjct: 193 GVGAVH--APAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLEFVQFHPTVL 250
Query: 322 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDD 381
LI+EAVRG+G IL + RFM A+LAPRDVVA++ID
Sbjct: 251 ------FLGPAAGGQRPLISEAVRGEGAILVDAQGNRFMAGVHPLADLAPRDVVAKAIDR 304
Query: 382 QLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRA 441
++K + +V LD E FP I A C G+D QPIPV PAAHY CGGV
Sbjct: 305 RMKATGDDHVYLDARG--IEGFARRFPTITASCRAAGIDPVRQPIPVAPAAHYSCGGVVT 362
Query: 442 GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSA 501
+ G T+V GLY AGEVACTG+HGANRLASNSLLE LV RA +A
Sbjct: 363 DVYGRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGA-----------AAAA 411
Query: 502 SNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELE 561
P++ L R ELQ M R G++RS L A D L
Sbjct: 412 HA--AAAGRPRATPAVGPEPGL-LPALDRAELQRAMTRGAGVLRSAAGLARAA---DRLA 465
Query: 562 AEWETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
A + G E NL A+ +V++ALAR ESRG H+ DFP
Sbjct: 466 AGAPA--------RVVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFP 511
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 478 bits (1231), Expect = e-163
Identities = 217/567 (38%), Positives = 303/567 (53%), Gaps = 56/567 (9%)
Query: 87 KYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 146
FD V+GSG AGL AL + H V +ITK S +++AQGG++A + P DS + H
Sbjct: 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLH 67
Query: 147 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 206
+DT+ AGA LCD E VR + + P+ I L+ +G +FDR +L L E HS R++
Sbjct: 68 YEDTLKAGAGLCDPEAVRFLVEQAPEAIASLVEMGVAFDR-HGQHLALTLEAAHSRPRVL 126
Query: 207 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 266
HAAD TGR I L E V+ PNI + A+ L L+ C G+ L +
Sbjct: 127 HAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLW--LEPETGRCQGISLLYQGQITWL 184
Query: 267 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 326
R + +LA+GG G ++ TTNP V+TGDG+A+A RA A + ++EF QFHPTAL G
Sbjct: 185 R--AGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQFHPTALTKPGA 242
Query: 327 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKR 386
P FLI+EAVRG+G L + RF Y ELAPRDVV+R+I L+K
Sbjct: 243 P---------RFLISEAVRGEGAHLVDAQGRRFAFDYHPAGELAPRDVVSRAIFSHLQKT 293
Query: 387 NEK----YVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAG 442
+V LD+ P E+I FPNI C K+G+D+ +PIPV PAAHY GGV
Sbjct: 294 ATDPATAHVWLDLRPIPAERIRRRFPNIIRVCQKWGIDVFQEPIPVAPAAHYWMGGVVTD 353
Query: 443 LQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR--RAVQPSIDH-----KKST 495
L +T++ GLY GE A TG+HGANRLASNSLLE LVFA ++ I+
Sbjct: 354 LNNQTSIPGLYAVGETASTGVHGANRLASNSLLECLVFAAQLAQLELPIEPPASPDLPPI 413
Query: 496 SIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEW 555
S + AS W N + + +R+EL ++W+ GI R +L+ A
Sbjct: 414 SFIIDASQW---------------KNEQEQIQRIRQELPELVWQSAGICREADTLERAIA 458
Query: 556 RIDELEAEW---------------ETYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSAL 600
++++ + + +T F + + L A E RNL A L++ SAL
Sbjct: 459 QVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWA-ETRNLLDIAYLILKSAL 517
Query: 601 ARHESRGLHYMVDFPHVEENKRLPTII 627
R ESRG HY +D+P + ++ T++
Sbjct: 518 FRTESRGGHYRLDYPQTDPAWQVHTLV 544
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 444 bits (1144), Expect = e-150
Identities = 217/536 (40%), Positives = 292/536 (54%), Gaps = 51/536 (9%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 152
+IGSG+A L A E+ V +ITK SN++ AQGG++A + DS H +DT+V
Sbjct: 8 IIGSGIAALTVAKELCHEYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLV 67
Query: 153 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA-ADM 211
AG + ++ VR + EGP I+ELI G FD E G LHL +EG H RI+HA D
Sbjct: 68 AGCHHNNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDA 127
Query: 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 271
TG+ + LL+ +V P+++V E IDL+ + C GV T + E + +
Sbjct: 128 TGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE----NGRCIGVLTKDSEGKLKRYYADY 181
Query: 272 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 331
V +LASGG G +Y T+N TGDG+AMA+RA A + ++EF+QFHPT L G
Sbjct: 182 V-VLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHPTMLYANG------ 234
Query: 332 KTRENSFLITEAVRGDGGILYNLGMERFM----PLYDERAELAPRDVVARSIDDQLKKRN 387
L++EAVRG+G +L N RFM PL D LAPRDVVAR+I ++L
Sbjct: 235 ---RCVGLVSEAVRGEGAVLINEDGRRFMMGIHPLAD----LAPRDVVARAIHEELLSGE 287
Query: 388 EKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGET 447
+ V L+IS + FP I+A C K G+DI ++ IPVVP AH++ GGV+ L GET
Sbjct: 288 K--VYLNISSIQNFE--ERFPTISALCEKNGVDIETKRIPVVPGAHFLMGGVKTNLDGET 343
Query: 448 NVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTR 507
++ GLY GEVACTG+HGANRLASNSLLE LVF +RA + I K + + +
Sbjct: 344 SIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAE-HILTKATKPRLNPFAEKEKK 402
Query: 508 TVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTA-EWRIDELEAEWET 566
+V L TKE E+Q M +YVGIVR+ SL A W
Sbjct: 403 FIVLNHL----------PTKE---EIQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMIL 449
Query: 567 YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 622
E+ E+ ++ AKL+V SAL R ESRG HY D+PH +
Sbjct: 450 DHDALTNEEI-------ELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRNWRGK 498
>gnl|CDD|236036 PRK07512, PRK07512, L-aspartate oxidase; Provisional.
Length = 513
Score = 424 bits (1092), Expect = e-142
Identities = 204/526 (38%), Positives = 267/526 (50%), Gaps = 58/526 (11%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEP--HESNTNYAQGGVSAVLCPSDSVESHMQDT 150
++G G+AGL AL++A V V++ A P +++ +AQGG++A L P DS H DT
Sbjct: 14 IVGGGLAGLMAALKLAPR-PVVVLSPA-PLGEGASSAWAQGGIAAALGPDDSPALHAADT 71
Query: 151 IVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAA- 209
+ AGA LCD ++ E P I +L+ +G FDR DG L L E HS RIVH
Sbjct: 72 LAAGAGLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGG 131
Query: 210 DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFI 269
D G I RAL+ AV + P+I+V E A LL D AV GV L V
Sbjct: 132 DGAGAAIMRALIAAVRATPSITVLEGAEARRLLV--DD-GAVA-GV--LAATAGGPVVLP 185
Query: 270 SKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 329
++ +LA+GG G +Y TTNP A G G+A+A RA AVI++ EFVQFHPTA+ P
Sbjct: 186 ARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFVQFHPTAIDIGRDPAP 245
Query: 330 PKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEK 389
L TEA+RG+G IL N ERFM AELAPRDVVAR++ ++ +
Sbjct: 246 ---------LATEALRGEGAILINEDGERFMADIHPGAELAPRDVVARAVFAEIA--AGR 294
Query: 390 YVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNV 449
LD + FP + A C G+D QPIPV PAAHY GG+ G +++
Sbjct: 295 GAFLDARAALGAHFATRFPTVYAACRSAGIDPARQPIPVAPAAHYHMGGIAVDADGRSSL 354
Query: 450 RGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTV 509
GL+ AGEVA TGLHGANRLASNSLLEA+VFA RA + D++ +
Sbjct: 355 PGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAE-----------DIAGT---PAAA 400
Query: 510 VPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLF 569
+R IM R+VG++R L+ A + LEA
Sbjct: 401 AAPLSAAAAPALDPADLALLRP----IMSRHVGVLRDADGLRRAIAALLPLEA------- 449
Query: 570 EHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
G + A L+ +ALAR ESRG H+ DFP
Sbjct: 450 ---------GAGPA--ADPATVALLIAVAALAREESRGAHFRTDFP 484
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 403 bits (1038), Expect = e-134
Identities = 212/561 (37%), Positives = 287/561 (51%), Gaps = 62/561 (11%)
Query: 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL-----CP 139
+ FD VIG G AGL A+E A+ G VA+++KA P +T AQGG++A L
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVE 63
Query: 140 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGG 199
DS E H DT+ G L D + V E P+ + EL G F R EDG ++ R GG
Sbjct: 64 GDSPELHFYDTVKGGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGG 123
Query: 200 HSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 259
HS R AAD TG E+ L E ++ I +F+ +F +DLL G GV +
Sbjct: 124 HSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGG---VAGVVARD 180
Query: 260 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 319
+ T E+ F +K +LA+GGAG +YP TTN + TGDG+AMA+RA A + +MEFVQFHPT
Sbjct: 181 LRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDMEFVQFHPT 240
Query: 320 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD---ERAELAPRDVVA 376
L G LITEAVRG+GGIL N ERFM Y + ELAPRDVV+
Sbjct: 241 GLVGSG------------ILITEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVS 288
Query: 377 RSIDDQLK------KRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVV 429
R+I +++ YV LD+ H E++ P I K+ G+D +PIPV
Sbjct: 289 RAILMEIREGRGVDGPGGDYVYLDLRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVR 348
Query: 430 PAAHYMCGGVRA-GLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPS 488
P HY GG+ + ET + GL+ AGE A HGANRL NSLL+ +VF R A + +
Sbjct: 349 PTVHYTMGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAA 408
Query: 489 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR-----TKEVRKELQSIMWRYVGI 543
++ K S AS +LRR ++R+ELQ +M VGI
Sbjct: 409 AEYAKEKSGSPPASA-VEAER-------ERFDALLRRGGDENPAQIREELQEVMGDNVGI 460
Query: 544 VRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGL---------EACEMRNLFCCAKL 594
R+ L+ A +++L+ E + +A E+ N+ A+
Sbjct: 461 FRNEEGLEKA---LEKLKELRERL-----KDIRVTDKSELFNTDLRDALELGNMLDVAEA 512
Query: 595 VVSSALARHESRGLHYMVDFP 615
V +SALAR ESRG HY D+P
Sbjct: 513 VAASALARTESRGAHYREDYP 533
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 401 bits (1032), Expect = e-133
Identities = 201/532 (37%), Positives = 289/532 (54%), Gaps = 26/532 (4%)
Query: 90 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESN-TNYAQGGVSAVLCPSDSVESHMQ 148
D +IGSG AG A+E + V +++K +S T A+GG +AVL P DS E H +
Sbjct: 9 DVLIIGSGGAGARAAIEAERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFE 68
Query: 149 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 208
DT+ GAYL D + V ++ E P R+++L GA FDR EDG + GG S +R +A
Sbjct: 69 DTMKGGAYLNDPKLVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYA 128
Query: 209 ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRF 268
D TG E+ L+E ++ + I + E AI L+ + G L++ E+
Sbjct: 129 GDRTGHEMMMGLMEYLIKE-RIKILEEVMAIKLIVD---ENREVIGAIFLDLRNGEIFPI 184
Query: 269 ISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPI 328
+K T+LA+GGAG +YP T+NP+ TGDG A+A+RA A + +ME VQFHPT + +
Sbjct: 185 YAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFHPTGM------V 238
Query: 329 KPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-ERAELAPRDVVARSIDDQLKK-- 385
P R L+TEAVRG+GGILYN ERFM YD ER EL+ RDVVAR+I ++++
Sbjct: 239 YPYSGR--GILVTEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGR 296
Query: 386 -RNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQ 444
N V LD++H P E I + + L G+DI +P+ V P AH+ GG+R
Sbjct: 297 GTNHGGVYLDVTHLPDEVIEEKLETMLEQFLDVGVDIRKEPMEVAPTAHHFMGGIRINED 356
Query: 445 GETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNW 504
ETN+ GL+ GEVA G+HGANRL N+L + VF A + + + ++ + N
Sbjct: 357 CETNIPGLFACGEVA-GGVHGANRLGGNALADTQVFGAIAGKSAAKNAENN--EFKKVNR 413
Query: 505 WTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEW 564
+ + N ++ EL+ MW YV IVR+ L+ A I+EL+ +
Sbjct: 414 SVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKALEEINELKEKL 473
Query: 565 ETYLFEHGWEQTFVGL-EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
+ V +A E+ N+ A+LV+ SAL R ESRG HY D+P
Sbjct: 474 KDLKVN-----GIVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYP 520
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 397 bits (1023), Expect = e-132
Identities = 196/527 (37%), Positives = 265/527 (50%), Gaps = 51/527 (9%)
Query: 113 VAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQDTIVAGAYLCDDETVRVVCTE 169
AVI+K P S+T AQGG++A L P DS E H DT+ YL D + V +C E
Sbjct: 2 TAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEYMCQE 61
Query: 170 GPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVVSDPN 229
P I EL G F R DG + GGHS R +AAD TG + L E +
Sbjct: 62 APKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCLKL-G 120
Query: 230 ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTN 289
+S F +FA+DL+ D GV +++T E+V F +K +LA+GG G IY +TTN
Sbjct: 121 VSFFNEYFALDLIHD----DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTN 176
Query: 290 PLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGG 349
+ TGDGMAMA RA + +MEFVQFHPT L G+ LITE RG+GG
Sbjct: 177 AHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGI------------LITEGCRGEGG 224
Query: 350 ILYNLGMERFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEK 402
L N ERFM Y E+ ELAPRDVV+R++ ++++ YV LD+ H EK
Sbjct: 225 YLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEK 284
Query: 403 ILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVR--AGLQGETNVRGLYVAGEVA 459
I P I + G+D +PIPV P AHY GG+ + + V+GL+ AGE A
Sbjct: 285 IEERLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDVICETRSIVKGLFAAGECA 344
Query: 460 CTGLHGANRLASNSLLEALVFARRA--------VQPSIDHKKSTSIDLSASNWWTRTVVP 511
C +HGANRL NSLLE +VF R A + + A +V
Sbjct: 345 CVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVE 404
Query: 512 KSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFE 570
++ G V ++R+EL M VGI R+ L+ A I+EL ++ + +
Sbjct: 405 RNGGERV--------AKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRERYKNVRIND 456
Query: 571 HG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
+ LEA E+ N+ A++V + AL R ESRG H D+P
Sbjct: 457 KSKVFNTDL--LEALELGNMLDLAEVVAAGALNRKESRGAHAREDYP 501
>gnl|CDD|180442 PRK06175, PRK06175, L-aspartate oxidase; Provisional.
Length = 433
Score = 374 bits (962), Expect = e-124
Identities = 163/406 (40%), Positives = 246/406 (60%), Gaps = 22/406 (5%)
Query: 86 VKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 145
Y D ++GSGVAGL AL + K + +++K + +E NT AQGG+S D + S
Sbjct: 2 NLYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNECNTYLAQGGISVARNKDD-ITS 60
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 205
++DT+ AG Y + E V+++ E + I +LI +G +FD+ E L +EG HS +RI
Sbjct: 61 FVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKE-LSYTKEGAHSVNRI 119
Query: 206 VHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 265
VH D TG+++E+ LL+ V NI++ E+ + +D++ D C G + ++ +
Sbjct: 120 VHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN----DNTCIG--AICLKDNKQ 173
Query: 266 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325
+ SKVT+LA+GG G ++ ++TN + TGDG+A+A R I +++++Q HPTA +E
Sbjct: 174 INIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHPTAFYEE- 232
Query: 326 LPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKK 385
FLI+E+VRG+GG L N ERF+ EL PRDVV ++I +++KK
Sbjct: 233 ------TIEGKKFLISESVRGEGGKLLNSKGERFV------DELLPRDVVTKAILEEMKK 280
Query: 386 RNEKYVLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQG 445
YV LDI+ + + + FP I ECLK G+DIT IPV PA HY GG++ L
Sbjct: 281 TGSNYVYLDITFLDKDFLKNRFPTIYEECLKRGIDITKDAIPVSPAQHYFMGGIKVDLNS 340
Query: 446 ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDH 491
+T+++ LY GEV+CTG+HGANRLASNSLLE LVF++R + I+
Sbjct: 341 KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAE-KINS 385
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 355 bits (912), Expect = e-114
Identities = 196/560 (35%), Positives = 276/560 (49%), Gaps = 58/560 (10%)
Query: 88 YFDFSVIGSGVAGLCYALEVAKHG----TVAVITKAEPHESNTNYAQGGVSAVLCPS--D 141
+D ++GSG+AGL A+ A+ +VAV++K +P S++ A+GG +AVL P D
Sbjct: 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGD 64
Query: 142 SVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS 201
S + H DT+ +L D + V V E P+ IR L G + R DG + GG S
Sbjct: 65 SFDLHAYDTVKGSDFLADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMS 124
Query: 202 HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE 261
R AAD TG I L + NI ++ HF L+ + V GV ++++
Sbjct: 125 FPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVE----NGVFKGVTAIDLK 180
Query: 262 TQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL 321
E F +K ++A+GGAG +Y TT TGDG+A+A+RA + +MEFVQFHPT L
Sbjct: 181 RGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPTGL 240
Query: 322 ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVARSI- 379
G+ LITEA RG+GG L N ERFM Y ++ ELAPRDVV+R+I
Sbjct: 241 VPSGI------------LITEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIM 288
Query: 380 DDQLKKRNEK------YVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAA 432
+ ++ R K YV LD+ H EKI P I KY G+D ++PIPV PAA
Sbjct: 289 TEIMEGRGFKHESGLCYVGLDLRHLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAA 348
Query: 433 HYMCGGVRAGLQGET------NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR---- 482
HY GG+ + G VRGL+ AGE A +HGANRL SNS E LV+ R
Sbjct: 349 HYTMGGIHTDVYGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGE 408
Query: 483 ----RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMW 538
A++ + ++ K G + E+R+EL IM
Sbjct: 409 QAAEYALKRPAPSSPVEKLAEKEEKRIFDKLLKKEGGEP--------SYEIRRELNDIMD 460
Query: 539 RYVGIVRSTTSLQTAEWRIDEL-EAEWETYLFEHG--WEQTFVGLEACEMRNLFCCAKLV 595
+ GI R + L A +I +L E + + + +A E+ + A++V
Sbjct: 461 KNFGIFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLK--DALELDGMLDLAEVV 518
Query: 596 VSSALARHESRGLHYMVDFP 615
AL R ESRG HY +D+P
Sbjct: 519 AIGALLRTESRGAHYRLDYP 538
>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 346 bits (889), Expect = e-111
Identities = 194/560 (34%), Positives = 282/560 (50%), Gaps = 58/560 (10%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLC--PSDSVESH 146
+D ++G+G AG+ A+E AV+TK P S+T AQGG+ A L D+ E H
Sbjct: 6 YDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWH 65
Query: 147 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH---- 202
DT+ G YL D + ++ E D + +L +G F+R +G + R GGH+
Sbjct: 66 TFDTVKGGDYLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGK 125
Query: 203 ---HRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 259
R +AAD TG I + L + V + F + +DLL T V GV
Sbjct: 126 APVRRACYAADRTGHMILQTLYQNCVKH-GVEFFNEFYVLDLLLTETPSGPVAAGVVAYE 184
Query: 260 VETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPT 319
+ T E+ F +K + A+GG+G +Y +T+N TGDGM + R + +MEF QFHPT
Sbjct: 185 LATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQFHPT 244
Query: 320 ALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-----AELAPRDV 374
LA GL I LI+EA RG+GGIL N ERFM ER +LAPRD+
Sbjct: 245 GLA--GLGI----------LISEAARGEGGILRNAEGERFM----ERYAPTIKDLAPRDI 288
Query: 375 VARSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPV 428
VARS+ ++++ N+ YV LD++H E + + P+I Y G+D +P+PV
Sbjct: 289 VARSMVLEVREGRGAGPNKDYVYLDLTHLGEEVLEAKLPDITEFARTYLGVDPVKEPVPV 348
Query: 429 VPAAHYMCGGVRAGLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 482
P AHY GG+ + GE T V GLY AGE AC +HGANRL +NSLL+ VF R
Sbjct: 349 YPTAHYAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGR 408
Query: 483 RAVQPSIDHKKSTS-IDLSASNWWTRTVVPKSLGCNVMHNILRRT-KE----VRKELQSI 536
RA + ++ + +DL + P+++ + ++L E +R ELQ
Sbjct: 409 RAGIAAAEYARGADFVDLPEN--------PEAMVVEWVEDLLSEHGNERVADIRGELQQS 460
Query: 537 MWRYVGIVRSTTSLQTAEWRIDELEAEWETY-LFEHGWEQTFVGLEACEMRNLFCCAKLV 595
M + R+ +L+ A I L+ ++ + + G LEA E+ L A++
Sbjct: 461 MDNNASVFRTEETLKQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVT 520
Query: 596 VSSALARHESRGLHYMVDFP 615
V AL R ESRG H D+P
Sbjct: 521 VVGALNRKESRGGHAREDYP 540
>gnl|CDD|130875 TIGR01816, sdhA_forward, succinate dehydrogenase, flavoprotein
subunit, E. coli/mitochondrial subgroup. Succinate
dehydrogenase and fumarate reductase are homologous
enzymes reversible in principle but favored under
different circumstances. This model represents a
narrowly defined clade of the succinate dehydrogenase
flavoprotein subunit as found in mitochondria, in
Rickettsia, in E. coli and other Proteobacteria, and in
a few other lineages. However, This model excludes all
known fumarate reductases. It also excludes putative
succinate dehydrogenases that appear to diverged before
the split between E. coli succinate dehydrogenase and
fumarate reductase [Energy metabolism, TCA cycle].
Length = 565
Score = 342 bits (880), Expect = e-110
Identities = 194/539 (35%), Positives = 261/539 (48%), Gaps = 63/539 (11%)
Query: 113 VAVITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDDETVRVVCTEG 170
A +TK P S+T AQGG+SA L D+ HM DT+ +L D + + +C +
Sbjct: 8 TACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQA 67
Query: 171 PDRIRELIAIGASFDRGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLE 222
P+ + EL +G F R EDG ++ GGH+ R AAD TG I L +
Sbjct: 68 PEAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQ 127
Query: 223 AVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH 282
+ + S F +FA+DLL DG C GV +ET E+ RF +K +LA+GG G
Sbjct: 128 QNLKA-DTSFFNEYFALDLLME-DGE---CRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182
Query: 283 IYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITE 342
IY STTN TGDG M RA + +MEFVQFHPT +A G LITE
Sbjct: 183 IYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGC------------LITE 230
Query: 343 AVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARSIDDQLKK-----RNEKYVLLDIS 396
RG+GGIL N ERFM Y A +LA RDVV+RS+ ++++ N+ +V LD+
Sbjct: 231 GCRGEGGILINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLD 290
Query: 397 HKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGE--------- 446
H E + P I+ + G+D PIPV+P HY GG+ G+
Sbjct: 291 HLGPEVLEGRLPGISETARTFAGVDPVKDPIPVLPTVHYNMGGIPTNYHGQVLRDGNGND 350
Query: 447 TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA-------VQPSIDHKKSTSIDL 499
V GLY AGE AC +HGANRL +NSLL+ +VF R A +P D K
Sbjct: 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAKPGSDVKPMPPNAG 410
Query: 500 SASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDE 559
S + + G V +R ELQ M + G+ R+ LQ +I
Sbjct: 411 EESVMRLDKLRFATGGERV--------AALRLELQRSMQNHAGVFRTGEVLQKGVEKISA 462
Query: 560 LEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
L+ ++ + + W V EA E++NL CA+ SA AR ESRG H DFP
Sbjct: 463 LKERYKNVKINDKSKVWNTDLV--EALELQNLLECAEATAVSAEARKESRGAHAREDFP 519
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 316 bits (811), Expect = e-100
Identities = 196/571 (34%), Positives = 284/571 (49%), Gaps = 68/571 (11%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 145
FD ++G+G +G+ +L++A+ G +VAV++K P S+T AQGG+ A L D+
Sbjct: 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHY 72
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 203
H DTI +L D + + +C E P+ + EL G FDR DG ++ GGH+ +
Sbjct: 73 HFYDTIKGSDWLGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG 132
Query: 204 -----RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 258
R AAD TG + L + V+ F A+DL+ DG GV L
Sbjct: 133 EKPVQRACAAADRTGHALLHTLYQQNVA-AKTQFFVEWMALDLIRDADGD---VLGVTAL 188
Query: 259 NVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHP 318
+ET +V +K TL A+GGAG I+ ++TN + TGDG+ MA RA + +MEF QFHP
Sbjct: 189 EMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHP 248
Query: 319 TALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER-AELAPRDVVAR 377
T +A G+ LITE VRG+GGIL N ERFM Y +LAPRD V+R
Sbjct: 249 TGVAGAGV------------LITEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSR 296
Query: 378 SIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIPVVPA 431
S+D ++K+ N +VLLD++H E I+ P+I LK+ +D +PIPVVP
Sbjct: 297 SMDQEIKEGRGCGPNGDHVLLDLTHLGAETIMKRLPSIREIALKFANVDCIKEPIPVVPT 356
Query: 432 AHYMCGGVRAGLQG---ETN------VRGLYVAGEVACTGLHGANRLASNSLLEALVFAR 482
HY GG+ + G T+ V G Y GE +C +HGANRL +NSLL+ +VF R
Sbjct: 357 IHYQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGR 416
Query: 483 RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRR------------TKEVR 530
A +DH K K L + L R ++V
Sbjct: 417 AAGNHIVDHVKKQH-------------EHKPLPADAADFSLARLAKLDKSTSGEYAQDVA 463
Query: 531 KELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHGWEQTFVGLEACEMRNLF 589
++++ M ++ G+ R+ L +I L E +L + +EA E+ NL
Sbjct: 464 NDIRATMQKHAGVFRTQALLDEGVEQILALAERVENIHLKDKSKVFNTARVEALEVANLI 523
Query: 590 CCAKLVVSSALARHESRGLHYMVDFPHVEEN 620
A+ + SA AR ESRG H D+ H ++
Sbjct: 524 EVARATMVSAAARKESRGAHAHSDYEHRDDE 554
>gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit; Provisional.
Length = 617
Score = 310 bits (795), Expect = 4e-97
Identities = 190/572 (33%), Positives = 278/572 (48%), Gaps = 76/572 (13%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 145
+D V+G+G AGL AL + + G A I+K P S+T AQGG++A L D
Sbjct: 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRW 89
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 203
H DT+ +L D + ++ +C E P + EL + G F R +DG ++ GG S
Sbjct: 90 HAYDTVKGSDWLGDQDAIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFG 149
Query: 204 ------RIVHAADMTGREIERALLEAVVSDP---NISVFEHHFAIDLLTTLDGPDAVCHG 254
R AAD TG A+L + + + F +FA+DL+ DG C G
Sbjct: 150 KGGQAYRCAAAADRTGH----AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGE---CRG 202
Query: 255 VDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFV 314
V +++E + RF + T++A+GG G Y S T+ TGDG AM RA + ++EFV
Sbjct: 203 VIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262
Query: 315 QFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRD 373
QFHPT + G LITE RG+GGIL N ERFM Y A +LA RD
Sbjct: 263 QFHPTGIYGAGC------------LITEGCRGEGGILRNSEGERFMERYAPTAKDLASRD 310
Query: 374 VVARSIDDQLKKR-----NEKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPI 426
VV+R++ ++ + N+ ++ LD++H P E + P I +E K G+D+T +PI
Sbjct: 311 VVSRAMTIEILEGRGCGPNKDHIYLDLTHLPPETLHERLPGI-SETAKIFAGVDVTKEPI 369
Query: 427 PVVPAAHYMCGGVRAGLQGET----------NVRGLYVAGEVACTGLHGANRLASNSLLE 476
PV+P HY GG+ + + V GL AGE AC +HGANRL +NSLL+
Sbjct: 370 PVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLD 429
Query: 477 ALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLG---CNVMHNIL-----RRTKE 528
+VF R A ++ K PK G + I T +
Sbjct: 430 IVVFGRAAANTVMEILKPGRPQPDL---------PKDAGEASIARLDKIRHNKGDISTAQ 480
Query: 529 VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LEACE 584
+RK +Q M ++ + R SLQ +I E+ ++++ + +++ V +E E
Sbjct: 481 IRKRMQRTMQKHAAVFRIGESLQEGVEKIKEIYSDFK-DVKIK--DKSLVWNTDLIETLE 537
Query: 585 MRNLFCCAKLVVSSALARHESRGLHYMVDFPH 616
+ NL AK + SA AR ESRG H DFP
Sbjct: 538 LENLLTQAKQTILSAEARKESRGAHARDDFPE 569
>gnl|CDD|180567 PRK06452, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 566
Score = 302 bits (776), Expect = 8e-95
Identities = 190/564 (33%), Positives = 285/564 (50%), Gaps = 55/564 (9%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC----PSDSV 143
+D VIG G+AGL A E+A G VAVI+K P S++ A+GG++A + P+D+
Sbjct: 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNP 65
Query: 144 ESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH 203
+ DT+ G YL D + ++ + + + L GA F+R DG + + GG ++
Sbjct: 66 DYMTYDTVKGGDYLVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYP 125
Query: 204 RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQ 263
R D TG + L E S N+ + F++DL+T + G+ + ++T
Sbjct: 126 RTRFVGDKTGMALLHTLFERT-SGLNVDFYNEWFSLDLVTD----NKKVVGIVAMQMKTL 180
Query: 264 EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALAD 323
F +K +LA+GG G +Y TTN + TGDG +A RA A + + EFVQFHPTAL
Sbjct: 181 TPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFHPTAL-- 238
Query: 324 EGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVARSIDDQ 382
+ LI+EA RG+GGIL N+ ERFM Y ++ +LAPRD+V+R+I +
Sbjct: 239 ----------YPSDVLISEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITE 288
Query: 383 LKKRN---EKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPIPVVPAAHYMCG 437
+++ YV LD++H E I +A E K G+D ++PIPV PA HY G
Sbjct: 289 IREGRGFPGGYVGLDLTHLGEEYIKERLA-LAVEAAKSFAGVDAFTEPIPVRPAQHYYMG 347
Query: 438 GVRAGLQGET-NVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR---RAV-------- 485
G+ + G ++ GL+ AGE AC +HGANRL SNSLL+ LVF + R V
Sbjct: 348 GIDVDIDGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKSNP 407
Query: 486 -QPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIV 544
P+ +++K + + V G + ++ ++L+ MW YVGI
Sbjct: 408 GNPTSNYEKEAEKVVDDA----YKFVKSESGVHF--------GQILEKLRDTMWDYVGIY 455
Query: 545 RSTTSLQTAEWRIDELEAEWET-YLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARH 603
R L A I++L Y+ + A E+RN+ A ++ SAL R
Sbjct: 456 RDEGGLLNAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERK 515
Query: 604 ESRGLHYMVDFPHVEENKRLPTII 627
ESRG HY D+P ++N L I
Sbjct: 516 ESRGAHYRTDYPDRDDNNWLKHTI 539
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 302 bits (775), Expect = 1e-94
Identities = 190/573 (33%), Positives = 293/573 (51%), Gaps = 70/573 (12%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG---TVAVITKAEPHESNTNYAQGGVSAVLC---PSDS 142
D ++G G+AG ALE+ + VAV+ K P S++ AQGG++A L P DS
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDS 63
Query: 143 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 202
E+H DT+ YL D + V ++ E PD I +L +G F R DG + GGHSH
Sbjct: 64 WEAHAFDTVKGSDYLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH 123
Query: 203 HRIVHAADMTGREIERALLEAVVSD---PNISVFEHHFAIDLLTTLDGPDAVCHGVDTLN 259
+R +AAD TG A+L +V++ +++++ + + L+ D GV +
Sbjct: 124 NRTCYAADKTGH----AILHELVNNLRRYGVTIYDEWYVMRLILE----DNQAKGVVMYH 175
Query: 260 VETQ--EVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 317
+ EVVR +K + A+GG G ++ +T+N +TGDG+AM A + +MEFVQFH
Sbjct: 176 IADGRLEVVR--AKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQFH 233
Query: 318 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERAELAPRDVVA 376
PT L G+ LI+EAVRG+G L N +RFM Y R ELAPRD+ +
Sbjct: 234 PTGLYPVGV------------LISEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITS 281
Query: 377 RSIDDQLK---------KRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPI 426
R+I +++ +V LD+ H EKI+S P E + G+D ++P+
Sbjct: 282 RAITLEIRAGRGINPDGSAGGPFVYLDLRHMGKEKIMSRVPFCWEEAHRLVGVDAVTEPM 341
Query: 427 PVVPAAHYMCGGV------RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 480
PV P HY GG+ R + V G + AGE AC +HGANRL SNSLLE +V+
Sbjct: 342 PVRPTVHYCMGGIPVNTDGRVRRSADGLVEGFFAAGECACVSVHGANRLGSNSLLECVVY 401
Query: 481 ARR---AVQPSIDHKKSTSID----LSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKEL 533
RR A+ + +K +D L + + ++ +S R ++R++
Sbjct: 402 GRRTGAAIAEYVQGRKLPEVDEQRYLKEAKQRIQALLDQSGTY--------RINQLRQQF 453
Query: 534 QSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHG--WEQTFVGLEACEMRNLFC 590
Q M + G+ R+ +Q +I +L+ ++E YL + G W + EA E+R+L
Sbjct: 454 QDCMTDHCGVFRTEEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELI--EALELRSLMV 511
Query: 591 CAKLVVSSALARHESRGLHYMVDFPHVEENKRL 623
+++++SAL R ESRG H D+P ++ L
Sbjct: 512 VGEIILTSALNRQESRGAHSREDYPQRDDQNFL 544
>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 292 bits (750), Expect = 8e-91
Identities = 175/568 (30%), Positives = 268/568 (47%), Gaps = 67/568 (11%)
Query: 90 DFSVIGSGVAGLCYALEVAK---HGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 146
D ++IG+G AGL A+ A+ + +A+I+K P S+T A+GG +AV DS + H
Sbjct: 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYH 65
Query: 147 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 206
DT+ G +LC+ + V P + +L G + R DG++++ R GG R
Sbjct: 66 FHDTVAGGDWLCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTW 125
Query: 207 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 266
AAD TG + L + + P I F+ HF +D+L D G+ +N+ +V
Sbjct: 126 FAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD----DGHVRGLVAMNMMEGTLV 181
Query: 267 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 326
+ + ++A+GGAG +Y TN + TGDGM MA+R + +MEFVQ+HPT L G+
Sbjct: 182 QIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQYHPTGLPGSGI 241
Query: 327 PIKPKKTRENSFLITEAVRGDGGIL-----------YNLGMERFMPLYDER---AELAPR 372
L+TE RG+GGIL Y LG E PL + + EL PR
Sbjct: 242 ------------LMTEGCRGEGGILVNKDGYRYLQDYGLGPE--TPLGEPKNKYMELGPR 287
Query: 373 DVVARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQP 425
D V+++ + +K N V LD+ H +K+ P I Y G+D +P
Sbjct: 288 DKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEP 347
Query: 426 IPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAV 485
IPV P AHY GG+ ET ++GL+ GE + GLHGANRL SNSL E +VF R A
Sbjct: 348 IPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAG 407
Query: 486 QPSIDH-KKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR-----RTKEVRKELQSIMWR 539
+ + + + + +A + V + + ++ ++R E+ M
Sbjct: 408 EQAAERAATAGPGNEAALDAQAADVEQR------LKALVNQEGGENWAKIRDEMGLSMEE 461
Query: 540 YVGIVRSTTSLQTAEWRIDELEAEWETY-------LFEHGWEQTFVGLEACEMRNLFCCA 592
GI R+ +Q ++ EL+ ++ +F L E+ A
Sbjct: 462 GCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDL------LYTIELGYGLDVA 515
Query: 593 KLVVSSALARHESRGLHYMVDFPHVEEN 620
+ + SALAR ESRG H +D E +
Sbjct: 516 ECMAHSALARKESRGAHQRLDEGCTERD 543
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 292 bits (748), Expect = 1e-90
Identities = 182/558 (32%), Positives = 268/558 (48%), Gaps = 47/558 (8%)
Query: 90 DFSVIGSGVAGLCYALEVAK---HGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESH 146
D +VIG+G AGL A+ A+ H VA+I+K P S+T A+GG +AV DS++ H
Sbjct: 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEH 64
Query: 147 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 206
DT+ G +LC+ + V E P + +L G + R DG +++ R GG R
Sbjct: 65 FHDTVSGGDWLCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTW 124
Query: 207 HAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVV 266
AAD TG + L + ++ P I ++ F DLL D G+ + + +V
Sbjct: 125 FAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD----DGRVCGLVAIEMAEGRLV 180
Query: 267 RFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGL 326
++ +LA+GGAG +YP TN + TGDGMAMA R + +MEFVQ+HPT L G+
Sbjct: 181 TILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQYHPTGLPGTGI 240
Query: 327 PIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD------------ERAELAPRDV 374
L+TE RG+GGIL N R++ Y + EL PRD
Sbjct: 241 ------------LMTEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDK 288
Query: 375 VARSIDDQLKKRNE------KYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIP 427
V+++ + K N V LD+ H + + P I Y +D +PIP
Sbjct: 289 VSQAFWHEHNKGNTIDTPYGDVVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIP 348
Query: 428 VVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQP 487
V P HY GG+ + ET ++GL+ GE A GLHGANRL SNSL E +VF RRA +
Sbjct: 349 VRPTVHYTMGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEA 408
Query: 488 SID----HKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGI 543
+ + H+KS + A RTV + L + + ++R E+ + M GI
Sbjct: 409 AAERAARHQKSNESAIRAQ---ARTVELR-LERLLSQHGGENWADIRAEMGATMESGCGI 464
Query: 544 VRSTTSLQTAEWRIDELEAEWETY-LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 602
R +Q ++ EL+ ++ + +H L E+ A+ +V SAL R
Sbjct: 465 YRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRR 524
Query: 603 HESRGLHYMVDFPHVEEN 620
ESRG H +D E +
Sbjct: 525 KESRGAHQRLDEGCTERD 542
>gnl|CDD|180193 PRK05675, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 570
Score = 291 bits (747), Expect = 1e-90
Identities = 190/550 (34%), Positives = 274/550 (49%), Gaps = 63/550 (11%)
Query: 104 ALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVESHMQDTIVAGAYLCD 159
AL++A+ G AV+TK P S+T AQGG++ + P+D HM DT+ Y+ D
Sbjct: 4 ALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGD 63
Query: 160 DETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH--------RIVHAADM 211
+ + +C+ GP+ + EL +G F R E G ++ GG S R AAD
Sbjct: 64 QDAIEYMCSVGPEAVFELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADR 123
Query: 212 TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISK 271
TG + L + + + + +A+DL+ DG AV GV + +ET E V SK
Sbjct: 124 TGHALLHTLYQGNLKN-GTTFLNEWYAVDLVKNQDG--AVV-GVIAICIETGETVYIKSK 179
Query: 272 VTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPK 331
T+LA+GGAG IY STTN L+ TGDG+ MA RA + ++E QFHPT +A G+
Sbjct: 180 ATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGV----- 234
Query: 332 KTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVARS-IDDQLKKR--- 386
L+TE RG+GG L N ERFM Y A +LA RDVVARS + + L
Sbjct: 235 -------LVTEGCRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCG 287
Query: 387 -NEKYVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIPVVPAAHYMCGGVRAGLQ 444
N+ +VLL + H E + S P I + +D PIPVVP HYM GGV +
Sbjct: 288 PNKDHVLLKLDHLGEEVLHSRLPGICELSKTFAHVDPVVAPIPVVPTCHYMMGGVATNIH 347
Query: 445 G----------ETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFAR-------RAVQP 487
G + + GL+ GEVAC +HGANRL NSLL+ +VF R +A++
Sbjct: 348 GQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALKE 407
Query: 488 SIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRST 547
I+++ ++ D+ A+ + ++ G +V +R+ELQS M Y G+ R+
Sbjct: 408 GIEYRDASESDIDAALARLNKLNERTGGEDV--------AALRRELQSCMQNYFGVFRTG 459
Query: 548 TSLQTAEWRIDELEAEWETYLFEHGWEQTF--VGLEACEMRNLFCCAKLVVSSALARHES 605
+Q ++ +L Q F +EA E++NL A+ +A R ES
Sbjct: 460 EYMQKGIAQLADLRERIANVKINDK-SQAFNTARIEALELQNLLEVAEATAIAAEVRKES 518
Query: 606 RGLHYMVDFP 615
RG H DF
Sbjct: 519 RGAHAREDFE 528
>gnl|CDD|181594 PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 588
Score = 282 bits (724), Expect = 6e-87
Identities = 193/570 (33%), Positives = 283/570 (49%), Gaps = 68/570 (11%)
Query: 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS--DS 142
V+ FD VIG+G AG+ AL++++ G + A+++K P S+T AQGG++ L + D+
Sbjct: 5 VREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDN 64
Query: 143 VESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSH 202
E HM DT+ Y+ D + + +C GP+ I EL +G F R +DG ++ GG S
Sbjct: 65 WEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSK 124
Query: 203 H-------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 255
+ R AAD TG + L + + + + ++F +A+DL+ DG AV G
Sbjct: 125 NFGGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDG--AVV-GC 180
Query: 256 DTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQ 315
+ +ET EVV F ++ T+LA+GGAG IY STTN + TGDG+ MA RA + +ME Q
Sbjct: 181 TAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQ 240
Query: 316 FHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDV 374
FHPT +A G+ L+TE RG+GG L N ERFM Y A +LA RDV
Sbjct: 241 FHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDV 288
Query: 375 VARSIDDQLKK-RNEK-----YVLLDISHKPTEKILSHFPNIAAECLKYG-LDITSQPIP 427
VARSI ++++ R + L + H E + S P I + +D +PIP
Sbjct: 289 VARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIP 348
Query: 428 VVPAAHYMCGGVRAGLQG----------ETNVRGLYVAGEVACTGLHGANRLASNSLLEA 477
V+P HYM GG+ + G + V GL+ GE+AC +HGANRL NSLL+
Sbjct: 349 VIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDL 408
Query: 478 LVFARRA---VQPSIDH----KKSTSIDLSAS----NWWTRTVVPKSLGCNVMHNILRRT 526
+VF R A +Q S+ + ++ D+ AS N W ++ V
Sbjct: 409 VVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNN---RNGEDPV-------- 457
Query: 527 KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE-TYLFEHGWEQTFVGLEACEM 585
++RK LQ M + R ++ + + + L + E +E E+
Sbjct: 458 -QIRKALQECMQNNFSVFREGDAMAKGLEELKVIRERLKNARLDDTSSEFNTQRIECLEL 516
Query: 586 RNLFCCAKLVVSSALARHESRGLHYMVDFP 615
NL A SA R ESRG H DFP
Sbjct: 517 DNLMETAYATAVSANFRTESRGAHSRFDFP 546
>gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone]
flavoprotein subunit.
Length = 635
Score = 282 bits (723), Expect = 2e-86
Identities = 192/574 (33%), Positives = 275/574 (47%), Gaps = 82/574 (14%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 145
+D V+G+G AGL A+ +++HG A ITK P S+T AQGG++A L D
Sbjct: 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRW 110
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHS---- 201
HM DT+ +L D + ++ +C E P + EL G F R EDG ++ GG S
Sbjct: 111 HMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG 170
Query: 202 ----HHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 257
+R AAD TG + L + N F +FA+DL+ DG C GV
Sbjct: 171 KGGQAYRCACAADRTGHAMLHTLYGQAMKH-NTQFFVEYFALDLIMDSDG---ACQGVIA 226
Query: 258 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 317
LN+E + RF + T+LA+GG G Y S T+ TGDG AM RA + ++EFVQFH
Sbjct: 227 LNMEDGTLHRFRAHSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFH 286
Query: 318 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 376
PT + G LITE RG+GGIL N ERFM Y A +LA RDVV+
Sbjct: 287 PTGIYGAGC------------LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVS 334
Query: 377 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVP 430
RS+ ++++ + ++ L ++H P E + P I+ + G+D+T +PIPV+P
Sbjct: 335 RSMTMEIREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLP 394
Query: 431 AAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVF 480
HY GG+ GE V GL AGE AC +HGANRL +NSLL+ +VF
Sbjct: 395 TVHYNMGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVF 454
Query: 481 AR-------RAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNI--LR------R 525
R +P K +PK G + + LR
Sbjct: 455 GRACANRVAEIAKPGEKQKP----------------LPKDAGEKTIAWLDKLRNANGSLP 498
Query: 526 TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG----LE 581
T ++R +Q +M + R+ +L+ IDE W+++ +++ + +E
Sbjct: 499 TSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDEA---WDSFHDVKVTDRSLIWNSDLIE 555
Query: 582 ACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
E+ NL A + + SA AR ESRG H DF
Sbjct: 556 TLELENLLINACITMHSAEARKESRGAHAREDFT 589
>gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 598
Score = 279 bits (715), Expect = 2e-85
Identities = 187/583 (32%), Positives = 265/583 (45%), Gaps = 100/583 (17%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVL--CPSDSVES 145
+D V+G+G AGL L +A+ G A ITK P S+T AQGG+SA L D
Sbjct: 13 YDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRW 72
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH-- 203
HM DT+ +L D + + +C E P + EL G F R E+G ++ GG + +
Sbjct: 73 HMYDTVKGSDWLGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYG 132
Query: 204 ------RIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDT 257
R AAD TG I L + + N F +FA+DL+ VC GV
Sbjct: 133 KGPPAQRTCAAADRTGHAILHTLYQQSLKH-NAEFFIEYFALDLIMD---DGGVCRGVVA 188
Query: 258 LNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFH 317
N++ + RF + + +LA+GG G Y S T+ TGDG M RA + +MEFVQFH
Sbjct: 189 WNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFVQFH 248
Query: 318 PTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERA-ELAPRDVVA 376
PT + G LITE RG+GG L N ERFM Y A +LA RDVV+
Sbjct: 249 PTGIYGAGC------------LITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVS 296
Query: 377 RSIDDQLKK-----RNEKYVLLDISHKPTEKILSHFPNIAAECLKY--GLDITSQPIPVV 429
R++ ++++ + + ++ L + H E + P I +E K G+D+T +PIPV+
Sbjct: 297 RAMTIEIREGRGVGKKKDHIFLHLDHLDPEVLHERLPGI-SESAKIFAGVDVTKEPIPVL 355
Query: 430 PAAHYMCGGVRAGLQGE----------TNVRGLYVAGEVACTGLHGANRLASNSLLEALV 479
P HY GG+ GE V GL GE AC +HGANRL SNSL++ +V
Sbjct: 356 PTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANRLGSNSLIDLVV 415
Query: 480 FARRA-------VQPSIDHK--KSTSIDLSASNWWTRTVVPKSLGCNVMHNILR------ 524
F R A ++P H + D + + + LR
Sbjct: 416 FGRAAALRAAEVIKPGAPHPPLPKDACDKALDRF----------------DRLRHANGGT 459
Query: 525 RTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE------------WETYLFEHG 572
T E+R ++Q M + R+ L+ +I E+ A W + L
Sbjct: 460 PTAELRLKMQRTMQEDAAVFRTGEVLEEGVEKISEVWAGLPDIKVTDRSLIWNSDL---- 515
Query: 573 WEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
+E E+ NL A + + SA R ESRG H DFP
Sbjct: 516 -------VETLELDNLMAQAVVTMESAENRKESRGAHAREDFP 551
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 271 bits (696), Expect = 5e-85
Identities = 151/419 (36%), Positives = 190/419 (45%), Gaps = 58/419 (13%)
Query: 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCP-----SDSVESH 146
VIGSG+AGL ALE A+ G VAV+ K +P T ++ GG+ A+ P DS + H
Sbjct: 4 VIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDALGTPPQGAGIDSPDLH 63
Query: 147 MQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-LHLAREGGHSHHRI 205
DT+ L D V P+ + L A+G F R + + L GG S
Sbjct: 64 PTDTLKGLDELADHPYVEAFVEAAPEAVDWLEALGVPFSRSTEDGHIDLRPLGGLS-ATW 122
Query: 206 VHAADM---------TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVD 256
D+ TG + LLE + I H A DL+ D GV
Sbjct: 123 RTPHDVADRRRGTLGTGHALLARLLEGALKRG-IDFQPRHPADDLIVE----DGRVTGVV 177
Query: 257 TLNVETQEVVRFISKV-TLLASGGAGH---------IYPSTTNPLVATGDGMAMAHRAQA 306
N VR + LLA+GG G Y TT P TGDG+A+A RA A
Sbjct: 178 VENRRNGREVRIRAIAGVLLATGGFGRNAELLLPAAGYADTTGPPANTGDGIALALRAGA 237
Query: 307 VISN--MEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 364
+++ MEFVQFHPT+L I R S L+ EA+RG+GGIL N RFM
Sbjct: 238 ALTDDLMEFVQFHPTSL----PGI-----RLGSGLLIEALRGEGGILVNDDGRRFM---- 284
Query: 365 ERAELAPRDVVARSIDDQLKKRNEK-YVLLDISHK-PTEKILSHFPNIAAEC-LKYGLDI 421
ELA RDVV+R+I +V LD E + + P E +D
Sbjct: 285 --NELASRDVVSRAITRNEIDEGRGAHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDP 342
Query: 422 TSQPIPVVPAAHYMCGGVRAGLQGET------NVRGLYVAGEVACTGLHGANRLASNSL 474
+PIPV PA HY GGVR G + GLY AGEVAC G+HGANRL NSL
Sbjct: 343 YDRPIPVFPAQHYTMGGVRTDENGRVLDADGQPIPGLYAAGEVACGGVHGANRLGGNSL 401
>gnl|CDD|236101 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 278 bits (712), Expect = 1e-84
Identities = 194/597 (32%), Positives = 281/597 (47%), Gaps = 91/597 (15%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLC---PSDSVE 144
+D VIG+G AGL A+E + G VAV+ K+ +++T A+GG +A + P D+ +
Sbjct: 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQ 68
Query: 145 SHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHR 204
H +DT+ G +L + + E PDR+ EL GA FDR +DG + GGH++ R
Sbjct: 69 VHFRDTMRGGKFLNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPR 128
Query: 205 IVHAADMTGREIERALLEAVVS------------DPNISVFEHHFAIDLLTTLDGPDAVC 252
+ H D TG E+ R L + +VS + I VF +LL DG +
Sbjct: 129 LAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLK--DG-GRIA 185
Query: 253 HGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNME 312
G E+ V F + +LA+GG G + T+N TGDG A+A RA A + NME
Sbjct: 186 -GAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRAGATLINME 244
Query: 313 FVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD-------- 364
FVQFHPT + + P + L+TE VRGDGG+L N +RFM Y
Sbjct: 245 FVQFHPTGM------VWPPSVK--GILVTEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQY 296
Query: 365 ----ERA--------------ELAPRDVVARSIDDQLKK-RNEKY--VLLDI-SHKPTEK 402
E A EL PRD VAR+I+ ++K R + V LDI S P E+
Sbjct: 297 AETEEEADRWYKDNDNNRRPPELLPRDEVARAINSEVKAGRGSPHGGVYLDIASRLPAEE 356
Query: 403 ILSHFPNIAAECLKYG-LDITSQPIPVVPAAHYMCGGVRAGLQ-GETNVRGLYVAGEVAC 460
I P++ + + +DIT +P+ V P HY+ GGV G V GL+ AGE A
Sbjct: 357 IKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGGVEVDPDTGAATVPGLFAAGECA- 415
Query: 461 TGLHGANRLASNSLLEALVFARRAVQPSIDHKKS---------TSIDLSASNWWTRTVVP 511
G+HG+NRL NSL + LVF RRA + D+ + ++D +A+
Sbjct: 416 GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVD-AAAREALAPFER 474
Query: 512 KSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWE------ 565
+ N + ELQ M VGI+R ++ A ++ EL+
Sbjct: 475 PAGAEN--------PYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEG 526
Query: 566 TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKR 622
+ GW A ++RN+ ++ V +AL R ESRG H D P ++ R
Sbjct: 527 HRQYNPGWHL------ALDLRNMLLVSECVARAALERTESRGGHTRDDHPGMDPEWR 577
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 242 bits (619), Expect = 5e-73
Identities = 165/539 (30%), Positives = 240/539 (44%), Gaps = 90/539 (16%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIV 152
++G G+AGL A+ +AK G I +SN+ AQ G++ + DS+ +H+ DTI
Sbjct: 6 IVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIR 65
Query: 153 AGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMT 212
AG Y+ D+E V V ++ + L ++G F+ E EGGHS R+ + T
Sbjct: 66 AGKYINDEEVVWNVISKSSEAYDFLTSLGLEFEGNE-------LEGGHSFPRVFTIKNET 118
Query: 213 GREIERAL-LEAVVSDPN-ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFIS 270
G+ I + L A N I F AI + +GV E+++F
Sbjct: 119 GKHIIKILYKHARELGVNFIRGFAEELAIK--------NGKAYGV----FLDGELLKF-- 164
Query: 271 KVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKP 330
T++A+GG ++ T + G + A A ++EFVQFHPT
Sbjct: 165 DATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGFIG------- 217
Query: 331 KKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY 390
+ ++LI+EAVRG G L ERF+ EL RD+VAR+I K + K
Sbjct: 218 ---KRGTYLISEAVRGAGAKLVTGDGERFV------NELETRDIVARAI--YRKMQEGKG 266
Query: 391 VLLDISHKPTEKILSHFPNIAAECLKYGLDITSQPIPVVPAAHYMCGGVRAGLQGETNVR 450
V LD + E FP I A K G+D + IPV P AHY GG+ T ++
Sbjct: 267 VFLDATG--IEDFKRRFPQIYAFLRKEGIDPSRDLIPVTPIAHYTIGGISVDTFYRTGIK 324
Query: 451 GLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVV 510
LY GE A G HGANRLASNSLLE +V + ++++ RT+
Sbjct: 325 NLYAIGEAASNGFHGANRLASNSLLECIV---------------SGLEVA------RTIS 363
Query: 511 ---PKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETY 567
PK +V ++ I+W + GIVRS SL+ +++ +EA+
Sbjct: 364 RERPKLREVKEPPYHGYELGDV-DSIREILWNHAGIVRSEESLREGLKKLEGIEAD---- 418
Query: 568 LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALARHESRGLHYMVDFPHVEENKRLPTI 626
L AK V+ ALAR ESRG HY DFP + + P+
Sbjct: 419 ------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRKEFERPSF 459
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 246 bits (630), Expect = 1e-72
Identities = 183/588 (31%), Positives = 266/588 (45%), Gaps = 94/588 (15%)
Query: 86 VKYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPS---- 140
+ Y D VIG+G+AGL A+ A+ G V++ S++ AQGG+ A L +
Sbjct: 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGE 62
Query: 141 -DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGN-------- 191
D+ + H DT+ + CD E R+ P +REL A G + R G
Sbjct: 63 GDNEDVHFADTVKGSDWGCDQEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGE 122
Query: 192 ------------LHLARE-GGHSHHRIVHAADMTGREIERALLEAV---VSDPNISVFEH 235
L AR+ GG R + AD TG +L AV + V +
Sbjct: 123 KVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGH----TMLYAVDNEAIKLGVPVHDR 178
Query: 236 HFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATG 295
AI L+ DG C+G + T E+ +++K TL+A+GG G IY TTN ++ G
Sbjct: 179 KEAIALIH--DG--KRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEG 234
Query: 296 DGMAMAHRAQ-AVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNL 354
G A+A A + NME VQFHPTA+ G+ L+TE RGDGG+L +
Sbjct: 235 IGAAIALETGVAPLGNMEAVQFHPTAIVPSGI------------LVTEGCRGDGGLLRDK 282
Query: 355 GMERFMPLYD-ERAELAPRDVVARSIDDQLKK------RNEKYVLLDISHKPTEKILSHF 407
RFMP Y+ E+ ELA RDVV+R + + ++K ++ LDI + I ++
Sbjct: 283 DGYRFMPDYEPEKKELASRDVVSRRMTEHIRKGKGVKSPYGPHLWLDIRILGRKHIETNL 342
Query: 408 PNIAAECLKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGET-NVRGLYVAGEVACTGLHG 465
+ C + G+D IPV P HY GG+R GE+ ++GL+ AGE AC +HG
Sbjct: 343 REVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGESYGLKGLFSAGEAACWDMHG 402
Query: 466 ANRLASNSLLEALVFARRAVQPSI-DHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILR 524
NRL NSL E +V A V + D +++ + V K + + ++
Sbjct: 403 FNRLGGNSLAETVV-AGMIVGKYVADFCLGNELEIDTAL--VEKFVKKQQ--DRIDELIA 457
Query: 525 RTK-----EVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVG 579
E++ E+Q IM VGI R+ L+ A + EL+ L E +G
Sbjct: 458 GEGKENVFEIKNEMQEIMMEKVGIFRNGPELEKA---VKELQE-----LLE---RSKNIG 506
Query: 580 L------------EACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
L EA + + A V ALAR ESRG H D+P
Sbjct: 507 LKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRGAHAREDYP 554
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 207 bits (528), Expect = 1e-58
Identities = 147/580 (25%), Positives = 243/580 (41%), Gaps = 83/580 (14%)
Query: 93 VIGSGVAGLCYALEVAKHG--TVAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHM 147
V+G+G+AG A ++A+ G P +++ AQGG++ + DS H
Sbjct: 3 VVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHF 62
Query: 148 QDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVH 207
DT+ G + + V+ + P+ I + A+G F R G L GG R +
Sbjct: 63 DDTVKGGDFRARESPVKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAY 122
Query: 208 AADMTGREIERALLEAV---VSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQE 264
A TG+++ AL A+ ++ + +E +D++ G+ N+ T E
Sbjct: 123 ARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGN---RARGIIARNLVTGE 179
Query: 265 VVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADE 324
+ + +LA+GG G+++ +TN + + A+ A +N EF+Q HPTA+ +
Sbjct: 180 IETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIHPTAIPVD 239
Query: 325 GLPIKPKKTRENSFLITEAVRGDGGIL--------------------YNLGMERFMPLYD 364
G K R L++E++R DG I Y L ER P +
Sbjct: 240 G--TWQSKLR----LMSESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFL--ERRYPAF- 290
Query: 365 ERAELAPRDVVARSIDDQ-----LKKRNEKYVLLDISHKPTEKILSH-----FPNIAAEC 414
L PRD+ +R+I E V LD S E++ + N+
Sbjct: 291 --GNLVPRDIASRAIFQVCDAGKGVGPGENAVYLDFSDA-DERLGRKEIDAKYGNLFEMY 347
Query: 415 LKY-GLDITSQPIPVVPAAHYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNS 473
K+ G D P+ + PA HY GG+ TN+ GL+ AGE + HGANRL +NS
Sbjct: 348 EKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQMTNIPGLFAAGECDFSQ-HGANRLGANS 406
Query: 474 LLEALVFARRAVQPSIDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKE----- 528
LL A+ A+ +I + +LS+ + +P+ L +E
Sbjct: 407 LLSAIADGYFALPFTIPN--YLGPELSSED------MPEDA--PEFQAALAEEQERFDRL 456
Query: 529 -----------VRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAE-WETYLFEHGWEQT 576
+ +EL IM G+ R+ L + +I EL W+ +++
Sbjct: 457 LKMRGDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKES 516
Query: 577 FVGLE-ACEMRNLFCCAKLVVSSALARHESRGLHYMVDFP 615
LE A + + A+L+ AL R+ES G H+ +FP
Sbjct: 517 NQVLEFARRVADYLELAELMCLDALNRNESCGAHFRPEFP 556
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 198 bits (506), Expect = 1e-55
Identities = 161/558 (28%), Positives = 254/558 (45%), Gaps = 62/558 (11%)
Query: 93 VIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSAVL---CPSDSVESHMQ 148
V+G G+AGL ++ A+ G V + + S++ AQGG++ + DS H
Sbjct: 8 VVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFD 67
Query: 149 DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHA 208
DT+ G +L + V+ +C P I L +G F+R +G L R GG HHR A
Sbjct: 68 DTVYGGDFLANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFA 127
Query: 209 ADMTGREIERALLEAV---VSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEV 265
TG+++ AL E V ++ +E + L + + VC G+ ++ T E+
Sbjct: 128 GATTGQQLLYALDEQVRRYEVAGLVTKYEGW---EFLGAVLDDEGVCRGIVAQDLFTMEI 184
Query: 266 VRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEG 325
F + ++A+GG G I+ +TN + TG + ++ A +N EF+Q HPTA+ +
Sbjct: 185 ESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQIHPTAIPGD- 243
Query: 326 LPIKPKKTRENSFLITEAVRGDGGILYNLG-------MERFMPLYDERAELAPRDVVARS 378
K R L++E+ RG+GG ++ +E P Y L PRD+ R
Sbjct: 244 -----DKLR----LMSESARGEGGRVWTYKDGKPWYFLEEKYPAY---GNLVPRDIATRE 291
Query: 379 I-----DDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLKY-GLDITSQPIPVVPAA 432
I + +L E V LD+SHK +++ I K+ G D P+ + PA
Sbjct: 292 IFDVCVEQKLGINGENMVYLDLSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAV 351
Query: 433 HYMCGGVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEA----LVFARRAVQPS 488
HY GG+ TN+ GL+ AGE + HGANRL +NSLL A +V AV+
Sbjct: 352 HYSMGGLWVDYDQMTNIPGLFAAGECDYS-YHGANRLGANSLLSAIYGGMVAGPNAVE-Y 409
Query: 489 IDHKKSTSIDLSASNWWTRTVVPKSLGCNVMHNILRRT-KE----VRKELQSIMWRYVGI 543
I ++ D+S+S + + NIL E + KEL M V +
Sbjct: 410 IKGLGKSADDVSSSVFEQALKQEQEK----FDNILSMDGTENAYVLHKELGEWMTDNVTV 465
Query: 544 VRSTTSLQTAEWRIDELEAEWE------TYLFEHGWEQTFVGLEACEMRNLFCCAKLVVS 597
VR L + +I EL ++ T + + Q ++ N+ A+++
Sbjct: 466 VRENDKLLETDEKIQELMERYKRISVNDTSRWSN---QGASFTR--QLWNMLELARVITI 520
Query: 598 SALARHESRGLHYMVDFP 615
AL R+ESRG HY +FP
Sbjct: 521 GALNRNESRGAHYKPEFP 538
>gnl|CDD|233583 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a
family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble periplasmic
protein with four heme groups, a non-covalently bound
FAD, and essentially unidirectional fumarate reductase
activity. At least seven distinct members of this family
are found in Shewanella oneidensis, a species able to
use a wide variety of pathways for respiraton [Energy
metabolism, Electron transport].
Length = 439
Score = 150 bits (380), Expect = 2e-39
Identities = 136/469 (28%), Positives = 197/469 (42%), Gaps = 106/469 (22%)
Query: 90 DFSVIGSGVAGLCYALEVAKHGT--VAVITKAEPHESNTNYAQGGVSAVLCP-------S 140
D V+GSG AGL AL K G V ++ K N+ A GG++A
Sbjct: 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIE 60
Query: 141 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 200
DS E ++DT+ G + D + VR++ E D + L G L + GGH
Sbjct: 61 DSPELFIKDTLKGGRGINDPDLVRILAEESADAVDWLQD-GVGARLD-----DLIQLGGH 114
Query: 201 SHHR--IVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 258
S R +G EI + L + I + DL+ G V +
Sbjct: 115 SVPRAHRPTGGAASGAEIVQKLYKKAK-KEGIDTRLNSKVEDLIQDDQGT------VVGV 167
Query: 259 NVETQEVVRFI--SKVTLLASGGAG-------HIYPS-----TTNPLVATGDGMAMAHRA 304
V+ + +I +K +LA+GG G P+ +TN ATGDG+ MA +
Sbjct: 168 VVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKKLGSTNQPGATGDGLLMAEKI 227
Query: 305 QAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYD 364
A + +M+++Q HPTA DEG FLI+EAVRG G IL N ERFM
Sbjct: 228 GAALVDMDYIQAHPTASPDEG-----------GFLISEAVRGYGAILVNKTGERFM---- 272
Query: 365 ERAELAPRDVVARSI------------DDQLKKR---NEKYVLLDISHK--PTEKILSHF 407
ELA RD V+ +I DD + K+ + Y L +++K E++ F
Sbjct: 273 --NELATRDTVSDAILAQPGKSAYLIFDDDVYKKAKKVDNYYRLGVAYKGDSLEELAKQF 330
Query: 408 PNIAAECLKYGL-----------------------DITSQPIPVV---PAAHYMCGGVRA 441
I A LK + D++ P + P H+ GGV+
Sbjct: 331 -GIPAAALKKTVKDYNDYVASGKDTPFGRPMDMPVDLSKSPYYAIKVTPGVHHTMGGVKI 389
Query: 442 GLQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 484
+ E + GL+ AGEV G+HGANRL N++ + +VF R A
Sbjct: 390 NTKAEVLDANGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIA 437
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 114 bits (288), Expect = 2e-26
Identities = 133/560 (23%), Positives = 210/560 (37%), Gaps = 120/560 (21%)
Query: 129 AQGGVSAVLC---PSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFD 185
AQGG++A DSV DT+ G + + V + + I + +A G F
Sbjct: 78 AQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREANVYRLAEVSVNIIDQCVAQGVPFA 137
Query: 186 RGEDGNLHLAREGGHSHHRIVHAADMTGREIERAL---LEAVVSDPNISVFEHHFAIDLL 242
R G L GG R +A TG+++ L ++ + ++ +DL+
Sbjct: 138 REYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLV 197
Query: 243 TTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAH 302
D G+ N+ T E+ R + +LA+GG G+++ +TN + + + AH
Sbjct: 198 VV----DGRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAH 253
Query: 303 RAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGIL----------- 351
+ A +N F Q HPT + G + K T L++E++R DG I
Sbjct: 254 KKGAYFANPCFTQIHPTCIPVSG-DYQSKLT-----LMSESLRNDGRIWVPKKKGDKRKP 307
Query: 352 ---------YNLGMERFMPLYDERAELAPRDVVARSIDDQLKKRNEKY--------VLLD 394
Y L ER P + L PRDV +R+ ++ + V LD
Sbjct: 308 NDIPEEERDYYL--ERRYPAF---GNLVPRDVASRAAKERC---DAGRGVGPTGLGVYLD 359
Query: 395 ----ISHKPTEKILSHFPNIAAECLKYG------LDIT-----SQPIPVVPAAHYMCGGV 439
I + I +YG IT P+ + PA HY GG+
Sbjct: 360 FADAIKRLGKDVIRE----------RYGNLFDMYERITGENPYETPMRIYPAVHYTMGGL 409
Query: 440 RAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEALV-------------FARRAVQ 486
+ + GL+V GE + HGANRL +++L++ L A
Sbjct: 410 WVDYNLMSTIPGLFVIGEANFSD-HGANRLGASALMQGLADGYFVLPYTIGNYLADTIGT 468
Query: 487 PSI--DHKK--------STSIDLSASNWWTRTVVPKSLGCNVMHNILRRTKEVRKELQSI 536
P + DH + ID + RTV +EL I
Sbjct: 469 PKVSTDHPEFKEAEAEVQDRIDRLLNIKGKRTV-----------------DSFHRELGKI 511
Query: 537 MWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTF-VGLE-ACEMRNLFCCAKL 594
MW Y G+ R+ L+ A +I L E+ + G LE A + + +L
Sbjct: 512 MWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGEL 571
Query: 595 VVSSALARHESRGLHYMVDF 614
+ AL R ES G H+ +
Sbjct: 572 MCRDALHREESCGGHFREEH 591
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 113 bits (283), Expect = 2e-26
Identities = 118/468 (25%), Positives = 178/468 (38%), Gaps = 106/468 (22%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEP--------HESNTNYAQGGVSAVLCPS 140
+D ++G+G AG+ A+E G VI + P S N ++ +
Sbjct: 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIA 121
Query: 141 DSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGH 200
DS + ++T+ G D +R I L ++G D L GG
Sbjct: 122 DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDN-------LTITGGM 174
Query: 201 SHHRIVHAAD--MTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTL 258
S R D G + LL+ V I +F + D+ T + D GV +
Sbjct: 175 SEKRTHRPHDGSAVGGYLVDGLLKNVQER-KIPLFVN---ADV-TKITEKDGKVTGV-KV 228
Query: 259 NVETQEVVRFISKVTLLASGGAG-------HIYPS-----TTNPLVATGDGMAMAHRAQA 306
+ +E SK ++ +GG G P TTN +TGDG+ M +
Sbjct: 229 KINGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGSTGDGIKMIEKLGG 288
Query: 307 VISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDER 366
+M+ +Q HPT + S+LI EAVRG+G IL N +RF
Sbjct: 289 TTVDMDQIQIHPTV------------QQSKSYLIGEAVRGEGAILVNQKGKRFG------ 330
Query: 367 AELAPRDVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFP------------------ 408
EL RD V+ +I+ YV+ D K K ++ +
Sbjct: 331 NELDTRDKVSAAINKL--PEKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKI 388
Query: 409 NIAAECLKYGLD-----------------------ITSQP---IPVVPAAHYMCGGVRAG 442
N+ AE L LD +++ P I + P HY GGV+
Sbjct: 389 NVPAETLTKTLDTWNKAVKNKKDEAFGRTTGMDNDLSTGPYYAIKIAPGIHYTMGGVKIN 448
Query: 443 LQGE------TNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRA 484
E + + GLY AGEV GLHG NR+ NS+ + ++F R+A
Sbjct: 449 TNTEVLKKDGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQA 495
>gnl|CDD|217281 pfam02910, Succ_DH_flav_C, Fumarate reductase flavoprotein C-term.
This family contains fumarate reductases, succinate
dehydrogenases and L-aspartate oxidases.
Length = 127
Score = 90.7 bits (226), Expect = 1e-21
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Query: 530 RKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWET-YLFEHG--WEQTFVGLEACEMR 586
RKELQ IM + G+ R+ L+ A +I EL ++ + + + + EA E+
Sbjct: 1 RKELQEIMQEHAGVFRTEEGLEEALEKIKELRERFKNVRVDDKSKVFNTDLI--EALELG 58
Query: 587 NLFCCAKLVVSSALARHESRGLHYMVDFP 615
NL A+ + +SALAR ESRG HY D+P
Sbjct: 59 NLLELAEAIATSALARKESRGAHYREDYP 87
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 90.6 bits (225), Expect = 1e-18
Identities = 86/330 (26%), Positives = 135/330 (40%), Gaps = 58/330 (17%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEPH-ESNTNYAQGGVSAVLCPSDSVESHM---- 147
V+G G+AG A+E A G ++ + E N+ A G++ + + + +
Sbjct: 414 VVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGK 473
Query: 148 ---QDTIVAG-AYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHH 203
+DT ++G CD V+ + + D I L ++G L++ GG S
Sbjct: 474 FFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTV-------LSQLGGASRK 526
Query: 204 RIVHAADMT-------GREIERALLEAVVSD--PNISVFEHHFAIDLLTTLDG-PDAV-- 251
R A D G I R L + + + +++ LL+ PD V
Sbjct: 527 RCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVRE 586
Query: 252 --CHGVDTLNVETQE--VVRFISKVTLLASGG--------------AGHIYP-STTNPLV 292
GV V+ ++ +LA+GG A + TTN
Sbjct: 587 IRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLREYAPQLSGFPTTNGPW 646
Query: 293 ATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILY 352
ATGDG+ +A + A + +M+ VQ HPT L D P K +L EA+RG GG+L
Sbjct: 647 ATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTK-----YLGPEALRGSGGVLL 701
Query: 353 NLGMERFMPLYDERAELAPRDVVARSIDDQ 382
N ERF+ EL R VV+++I Q
Sbjct: 702 NKNGERFV------NELDLRSVVSQAIIAQ 725
Score = 52.9 bits (127), Expect = 5e-07
Identities = 38/97 (39%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 428 VVPAAHYMCGGV----RAGLQGETN----------VRGLYVAGEVACTGLHGANRLASNS 473
V P+ HY GG A +Q E N + GL+ AGEV G+HG NRL NS
Sbjct: 825 VTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPILGLFGAGEVT-GGVHGGNRLGGNS 883
Query: 474 LLEALVFAR----RAVQPSIDHKKSTSIDLSASNWWT 506
LLE +VF + RA +I KK LS W T
Sbjct: 884 LLECVVFGKIAGDRAA--TILQKKKYG--LSKDKWTT 916
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 57.9 bits (140), Expect = 1e-08
Identities = 145/579 (25%), Positives = 223/579 (38%), Gaps = 107/579 (18%)
Query: 90 DFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQG--GVS-AVLCPSDSVES 145
D VIG G AG AL A+HG V ++ KA S A G GV+ AV+ E
Sbjct: 15 DVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGA-LAMGMDGVNNAVIPGKAEPED 73
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRI 205
++ + A + + TV T G ++ L G F++ E G + R H
Sbjct: 74 YVAEITRANDGIVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRR----VHRSG 129
Query: 206 VHAADM-TGREIERALLEAVVSDPN---ISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVE 261
+ M G+++++AL + I + + +LT +G AV G LN
Sbjct: 130 SYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLT--EGGRAV--GAAALNTR 185
Query: 262 TQEVVRFISKVTLLASG--------GAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEF 313
T E V +K +LA+G +G++Y + NP A GDG +MA+ A A +S +E
Sbjct: 186 TGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNA-GDGYSMAYHAGAELSGIEC 244
Query: 314 VQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPL-YDERAELAPR 372
Q +P + D P N F GG N ERF+ Y +A
Sbjct: 245 FQINPL-IKDYNGPACAYVA--NPF---------GGYQVNAQGERFVDSDYWSGQMMAE- 291
Query: 373 DVVARSIDDQLKKRNEKYVLLDISHKPTEKILSHFPNIAAECLK---------YGLDITS 423
V R I+ R Y L +SH P E+ LS +I + G D +
Sbjct: 292 --VKREIESA---RGPIY--LKVSHLP-EETLSALESILHTTERPTRGTFHANRGHDYRT 343
Query: 424 QPIPVVPAAHYMCG-----GVRAGLQGETNVRGLYVAGEVACTGLHGANRLASNSLLEAL 478
I + + +C GV T V GLY AG++AC + N ++ A
Sbjct: 344 HDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLAC--------VPHNYMIGAF 395
Query: 479 VFARRAVQPSIDHKKSTSIDLS---ASNWWTRTVVPKSLGCNVM---HNILRR------- 525
VF DL+ A+ P L + + H ++ R
Sbjct: 396 VFG----------------DLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPDG 439
Query: 526 --TKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLEAC 583
+V +L+ + YV ++ L A + + AE + G +
Sbjct: 440 PPQPQVEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAE----IAGMGARTPHELMRCA 495
Query: 584 EMRNLFCCAKLVVSSALARHESR-GL-HYMVDFPHVEEN 620
E+ + CA++ S+L R ESR GL H D P ++
Sbjct: 496 EVSFIRDCAEMAARSSLTRTESRWGLYHDRADLPERDDA 534
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 57.4 bits (139), Expect = 1e-08
Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 37/251 (14%)
Query: 89 FDFSVIGSGVAGLCYALEVAKH----GTVAVITKAEPHESNTNYAQGGVS--------AV 136
D VIG G AG A++ AK V ++ KA S G +S AV
Sbjct: 10 TDILVIGGGTAGPMAAIK-AKERNPALRVLLLEKANVKRS------GAISMGMDGLNNAV 62
Query: 137 LCPSDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 196
+ + E + ++ +A + D + V + I++L G F++ E G+ + +
Sbjct: 63 IPGHATPEQYTKEITIANDGIVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKK 122
Query: 197 EGGHSHHRIVHAADM-TGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGV 255
HH + M G +I++ L + + + A LLT DG V G
Sbjct: 123 ----VHHMGSYVLPMPEGHDIKKVLYRQL-KRARVLITNRIMATRLLTDADG--RVA-GA 174
Query: 256 DTLNVETQEVVRFISKVTLLASGGAGHI-YPST-------TNPLVATGDGMAMAHRAQAV 307
+ T E + +K +L G AG + P++ NP A GDG AMA+ A A
Sbjct: 175 LGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNA-GDGYAMAYHAGAE 233
Query: 308 ISNMEFVQFHP 318
++N+E Q +P
Sbjct: 234 LANLECFQINP 244
Score = 46.2 bits (110), Expect = 4e-05
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 43/217 (19%)
Query: 418 GLDITSQPIPVVPAAHYMCGG-----VRAGLQGETNVRGLYVAGEVACTGLHGANRLASN 472
G D Q + + + C G V + ET V GLY AG++A N
Sbjct: 333 GTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAETTVPGLYAAGDMASVPH--------N 384
Query: 473 SLLEALVFARRAVQPSIDHKKSTSI------DLSASNWWTRTVVPKSLGCNVMHNILRRT 526
+L A + A + + ++ + + A R + P L R
Sbjct: 385 YMLGAFTYGWFAGENAAEYVAGRDLPEVDAAQVEAER--ARVLAP-----------LHRE 431
Query: 527 -----KEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLE 581
+V +L+ ++ Y+ + T ++ R E+ + E + + LE
Sbjct: 432 DGLPPAQVEYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLE-RIKARDPHELMRALE 490
Query: 582 ACEMRNLFCCAKLVVSSALARHESR-GL-HYMVDFPH 616
+R+ CA++ ++L R ESR GL HY VDFP
Sbjct: 491 VSSIRD---CAEMAARASLFRTESRWGLYHYRVDFPE 524
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 45.3 bits (108), Expect = 8e-05
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 213 GREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKV 272
G + + EA +V F DLL D G +V + F +K
Sbjct: 131 GESYKPIVAEAAKKALGDNVLNRVFITDLLVD----DNRIAGAVGFSVRENKFYVFKAKA 186
Query: 273 TLLASGGAGHIY-PSTTN--------PLVATGDGMAMAHRAQAVISNMEF 313
++A+GGA IY P + P TG G AM RA A ++ E
Sbjct: 187 VIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGIRAGAEMTTFEN 236
Score = 40.3 bits (95), Expect = 0.003
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 41/201 (20%)
Query: 446 ETNVRGLYVAGEVACTGLHGAN--RLASNSLLEALVFARRAVQPSIDHKKSTSIDLSASN 503
T V GL+ AG+V G + + +S S E + A+ AV+ +D+K ++
Sbjct: 392 MTTVEGLFAAGDVV-----GGSPHKFSSGSFAEGRIAAKAAVRYILDNKD-EKPEIDDDQ 445
Query: 504 ------------WWTRTVVPKSLGCNVMHNILRRTKEVRKELQSIMWRYVGIVRS--TTS 549
S +V N + +++ + LQ IM Y G + + TT+
Sbjct: 446 IEELKKEIYAPLERYEEFKDYSTDPDVNPNYIS-PEQLEERLQKIMDEYAGGISTNYTTN 504
Query: 550 ---LQTAEWRIDELEAEWETY----LFEHGWEQTFVGLEACEMRNLFCCAKLVVSSALAR 602
L+ A ++ LE + E L E + E+++ A+ + L R
Sbjct: 505 EKLLEIALELLEMLEEDSEKLAARDLHEL--------MRCWELKHRLLVAEAHIRHLLFR 556
Query: 603 HESR--GLHYMVDFPHV-EEN 620
E+R G + D+P +EN
Sbjct: 557 KETRWPGYYERADYPGKDDEN 577
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 42.2 bits (100), Expect = 6e-04
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP--------HESNTNYAQGGVSAVLCP 139
D VIG G A LC AL + G +V ++ A H N VL
Sbjct: 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVG 64
Query: 140 SDSVESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 196
+ E QD + D+ R++ E D + G F G LH+AR
Sbjct: 65 AYPEEEFWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVAR 121
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 40.7 bits (96), Expect = 0.001
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 151
VIG G+ GL A E+A+ G +V ++ + + + G +
Sbjct: 4 VIGGGIVGLSTAYELARRGLSVTLLERGDLASGASGRNAGLLH----------------- 46
Query: 152 VAGAYLCDDETVRVVCTEGPDRIRELIAI-GASFDRGEDGNLHLARE 197
G + + E D RELI G D G L LAR+
Sbjct: 47 -PGLRKERAPLLARLALESRDLWRELIEELGIDCDFRRTGVLVLARD 92
>gnl|CDD|233702 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
subunit. During dissimilatory sulfate reduction or
sulfur oxidation, adenylylsulfate (APS) reductase
catalyzes reversibly the two-electron reduction of APS
to sulfite and AMP. Found in several bacterial lineages
and in Archaeoglobales, APS reductase is a heterodimer
composed of an alpha subunit containing a noncovalently
bound FAD, and a beta subunit containing two [4Fe-4S]
clusters. Described by this model is the alpha subunit
of APS reductase, sharing common evolutionary origin
with fumarate reductase/succinate dehydrogenase
flavoproteins [Central intermediary metabolism, Sulfur
metabolism].
Length = 614
Score = 39.5 bits (92), Expect = 0.005
Identities = 62/262 (23%), Positives = 96/262 (36%), Gaps = 70/262 (26%)
Query: 90 DFSVIGSGVAGLCYALEVA----KHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVES 145
D ++G G+ G A E K G V+ + E + AQG +SA+ +
Sbjct: 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGAVAQG-LSAINTYLGTRFG 59
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRE-LIAIGASFDRGEDGNLHL---------- 194
++ ++ VR V T+ +RE LI R D ++HL
Sbjct: 60 --ENNA--------EDYVRYVRTDLMGLVREDLIF---DMARHVDDSVHLFEEWGLPLWI 106
Query: 195 -------AREG-------GHSHHRIV-HAADMTGREIERALLEAVVSDPNISVFEHHFAI 239
REG G S+ IV AA +I FE F +
Sbjct: 107 KPEDGKYVREGRWQIMIHGESYKPIVAEAAKNALGDI----------------FERIFIV 150
Query: 240 DLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIY-PSTTN--------P 290
LL + P+ + V NV EV F +K ++A+GGA ++Y P +
Sbjct: 151 KLLLDKNTPNRIAGAVG-FNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYA 209
Query: 291 LVATGDGMAMAHRAQAVISNME 312
+ G M +A A ++ ME
Sbjct: 210 VWNAGSTYTMCAQAGAEMTQME 231
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 39.3 bits (92), Expect = 0.005
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 90 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 149
D VIGSG GL A+ K G V+ + EP T GGV + + E+ + D
Sbjct: 11 DVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVAD 70
Query: 150 TIVAGA-YL 157
+ A YL
Sbjct: 71 SREAARTYL 79
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 37.6 bits (87), Expect = 0.019
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTI 151
+IG G+ GL A +A+ G V V+ E GG+ A
Sbjct: 9 IIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLAD 68
Query: 152 VAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADM 211
++ A + E + GA R +L AA++
Sbjct: 69 LSLALW--------------RELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAEL 114
Query: 212 TGREIERALLEAV 224
+ LL+A
Sbjct: 115 EAAGEDAELLDAA 127
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 36.0 bits (84), Expect = 0.060
Identities = 34/127 (26%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 81 LRDGSVKYFDFS----VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTN------YA 129
+ V +D V+G G AG C A+E A G V V+ +A T Y
Sbjct: 9 VSAEDVTSWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSGGVIYL 68
Query: 130 QGGVSAVLCP--SDSVESHMQDTIVAGAYLC-------DDETVRVVCTEGPDRIRELIAI 180
GG + DS E+ M AYL D+E +R C + L +
Sbjct: 69 GGGTAVQKAAGFEDSPEN-MY------AYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGL 121
Query: 181 GASFDRG 187
G F+R
Sbjct: 122 GVPFERS 128
>gnl|CDD|233889 TIGR02485, CobZ_N-term, precorrin 3B synthase CobZ. CobZ is
essential for cobalamin biosynthesis (by knockout of the
R. capsulatus gene ) and is complemented by the
characterized precorrin 3B synthase CobG. The enzyme has
been shown to contain flavin, heme and Fe-S cluster
cofactors and is believed to require dioxygen as a
substrate. This model identifies the N-terminal portion
of the R. capsulatus gene which, in other species exists
as a separate protein. The C-terminal portion is
homologous to the 2-component signal transduction system
protein CitB (TIGR02484) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 432
Score = 35.6 bits (82), Expect = 0.075
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEP---------HESNTNYAQGGVSAVLCPSDSV 143
VIG G+AGLC A+E A+ G ++ +A P H N A + S
Sbjct: 1 VIGGGLAGLCAAIEAARAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPA 60
Query: 144 ESHMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAR 196
E +D ++ R+ G +R A G GNL +R
Sbjct: 61 EEFERDLAPVTGGRTNESLSRLGIGRGSRDLRWAFAHGVHLQPWAAGNLPYSR 113
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 35.0 bits (81), Expect = 0.14
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV 133
+D V+GSG AG+ AL A G + V+ KA + +T + GGV
Sbjct: 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGV 53
Score = 29.6 bits (67), Expect = 5.4
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 43/141 (30%)
Query: 242 LTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGH------IY---PSTTNPLV 292
LT L D GV +++R V +LASGG H Y P T V
Sbjct: 231 LTDLYVEDGRVTGVHAAESGEPQLIRARRGV-ILASGGFEHNEQMRAKYQRAPIGTEWTV 289
Query: 293 A----TGDGMAMAHRAQAVISNMEFVQFHPT---------ALADEGLPIKPKKTRENSFL 339
TGDG+ + A + M+ + PT AL++ LP
Sbjct: 290 GAKANTGDGILAGEKLGAALDLMDDAWWGPTIPLPGGPWFALSERNLP------------ 337
Query: 340 ITEAVRGDGGILYNLGMERFM 360
G I+ N+ +RFM
Sbjct: 338 --------GSIIVNMSGKRFM 350
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 34.4 bits (79), Expect = 0.17
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSA 135
+D VIG G GL A E A +G V ++ P T + GG
Sbjct: 3 YDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCV 50
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 33.5 bits (77), Expect = 0.33
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 90 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQD 149
D VIGSG AGL A+ A HG ++ + +P T GG + + + + +
Sbjct: 14 DVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVE 73
Query: 150 TI 151
I
Sbjct: 74 DI 75
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 33.6 bits (77), Expect = 0.33
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPH 122
+D +V+G G+ G AL AK G +VAVI EP
Sbjct: 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPK 38
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 33.6 bits (77), Expect = 0.33
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGV 133
+D V+GSG G+C AL A G +I + + + GGV
Sbjct: 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGV 51
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 33.4 bits (77), Expect = 0.37
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVI 116
D V+G+G AGL +A +A G V +I
Sbjct: 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLI 32
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 33.3 bits (77), Expect = 0.40
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 14/124 (11%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQG--GVSAVLCPSDSVES 145
FD VIG G+AGL AL A+ G VA++ K + +++ G + L V
Sbjct: 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG---QGALHFSSGSIDLLGYLPDGQPVSD 59
Query: 146 HMQDTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDR-GEDGNLHLAREGGHSHHR 204
+ A A L + G D +RE + A F E L L +H R
Sbjct: 60 PFE----ALAALAEQAPEHPYSLVGADAVREAL---AQFQALLEAAGLPLVGSVERNHLR 112
Query: 205 IVHA 208
Sbjct: 113 PTPL 116
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 33.1 bits (76), Expect = 0.44
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGT-VAVIT 117
FD +IG G+AGL AL +A+ G A+I
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIA 30
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 33.2 bits (77), Expect = 0.45
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEP 121
+ +D VIG+G AG A AK G VA+I K
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPL 37
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 32.9 bits (75), Expect = 0.51
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGG 132
+D VIG G G+ A E A HG VA+ +P T + GG
Sbjct: 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGG 50
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 32.8 bits (75), Expect = 0.58
Identities = 28/167 (16%), Positives = 50/167 (29%), Gaps = 38/167 (22%)
Query: 93 VIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQ--- 148
++G+G AGL AL +A+ G V ++ +A + G + S + ++
Sbjct: 7 IVGAGPAGLALALALARAGLDVTLLERAPRE-----LLERG--RGIALSPNALRALERLG 59
Query: 149 --DTIVAGAYLCDDETVRVVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIV 206
D + A D G L
Sbjct: 60 LWDRLEALGVPPLH--------------------VMVVDDGGRRLLIFDAAELGRGALGY 99
Query: 207 HAADMTGR-EIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVC 252
+ R ++ ALLEA + PN+++ + DG
Sbjct: 100 ----VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTL 142
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 32.8 bits (75), Expect = 0.70
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEP 121
VIG GVAG+ ALE+A G + + EP
Sbjct: 129 VIGGGVAGITAALELADMGFKVYLVEKEP 157
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 31.9 bits (73), Expect = 1.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPH 122
FD+ ++G+G++G A A+ G +I + H
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35
>gnl|CDD|217230 pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase,
pyridoxal binding domain. These pyridoxal-dependent
decarboxylases acting on ornithine, lysine, arginine and
related substrates This domain has a TIM barrel fold.
Length = 245
Score = 31.5 bits (72), Expect = 1.1
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 165 VVCTEGPDRIRELIAIGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGRE-IERALLEA 223
V P +R L +G FD G L G RI+ A R + AL
Sbjct: 26 VKANSDPAVLRLLAELGLGFDCASKGELERVLAAGVPPERIIFANPCKSRSELRYALEHG 85
Query: 224 VVSDPNISVFEHHFAIDLL 242
VV ++ ++ L
Sbjct: 86 VV----CVTVDNVEELEKL 100
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 31.6 bits (72), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNY 128
D +VIG G AGL ALE+A+ G V +I P N Y
Sbjct: 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY 40
>gnl|CDD|233108 TIGR00735, hisF, imidazoleglycerol phosphate synthase, cyclase
subunit. [Amino acid biosynthesis, Histidine family].
Length = 254
Score = 31.6 bits (72), Expect = 1.2
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 241 LLTTLDGPDAVCHGVD-TLNVETQEVVRFISKVTLLASGGAG---HIYPSTTNPLVATGD 296
LLT++D D G D L E V K+ ++ASGGAG H Y + T
Sbjct: 173 LLTSMDK-DGTKSGYDLELTKAVSEAV----KIPVIASGGAGKPEHFYEAFTKGKADAAL 227
Query: 297 GMAMAHRAQAVISNMEFVQFHPTALADEGLPIK 329
++ H + I ++ LA+ G+P++
Sbjct: 228 AASVFHYREITIGEVK------EYLAERGIPVR 254
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 31.4 bits (72), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 446 ETNVRGLYVAGEVACTGLH 464
ETNV GLY+AG V G+
Sbjct: 276 ETNVPGLYLAG-VIAAGMD 293
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEP 121
+IG G+AGL A + K G +T E
Sbjct: 5 IIGGGIAGLSAAYRLQKAGPDVEVTLFEA 33
>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 31.3 bits (71), Expect = 1.7
Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 90 DFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHESNTNYAQGGV----SAVLCPSDSVE 144
D VIG G AGL A E AK G V +I P +N GV L D +E
Sbjct: 110 DLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-----GVWEDEFKDLGLEDCIE 164
Query: 145 SHMQDTIVAGAYLCDDETV 163
+DTIV YL DD+ +
Sbjct: 165 HVWRDTIV---YLDDDKPI 180
>gnl|CDD|232789 TIGR00027, mthyl_TIGR00027, methyltransferase, TIGR00027 family.
This model represents a set of probable
methyltransferases, about 300 amino acids long, with
essentially full length homology. Members share an
N-terminal region described by pfam02409. Included are a
paralogous family of 12 proteins in Mycobacterium
tuberculosis, plus close homologs in related species, a
family of 8 in the archaeon Methanosarcina acetivorans,
and small numbers of members in other species, including
plants [Unknown function, Enzymes of unknown
specificity].
Length = 260
Score = 30.7 bits (70), Expect = 2.3
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 531 KELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYLFEHGWEQTFVGLE 581
E ++ M + + + + A+ +L E GW +
Sbjct: 203 GEWRAGMRA--PVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEHTPG 251
>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 31.0 bits (70), Expect = 2.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAE 120
+D V+GSG GL A+ A G V V+ KA
Sbjct: 9 YDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS 41
>gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane
dioxygenase [General function prediction only].
Length = 336
Score = 30.4 bits (69), Expect = 2.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 19/68 (27%)
Query: 247 GPDAVCH-GVDTLNVET----QEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMA 301
G +A H G L V T EVV + + ++A+GG +A G G+A A
Sbjct: 155 GAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGG------------IADGRGIAAA 202
Query: 302 HR--AQAV 307
A V
Sbjct: 203 LALGADGV 210
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 30.5 bits (70), Expect = 2.7
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK 118
+D VIGSG AG A++ AK G VAVI +
Sbjct: 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIER 36
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 30.7 bits (70), Expect = 2.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITKAEPHE-SNTNYAQGGVSAVLCPS 140
D +++G G+ G AL +A+HG +VAV+ A P + +SA+ S
Sbjct: 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAAS 59
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 30.5 bits (69), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHGTVAVI 116
FD ++IG G+AGL L + + G I
Sbjct: 3 FDVAIIGGGLAGLTCGLALQQAGKRCAI 30
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 27.8 bits (63), Expect = 3.2
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 93 VIGSGVAGLCYALEVAKHG-TVAVI 116
++G+G++GL A +AK G V V+
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVL 25
>gnl|CDD|220512 pfam09998, DUF2239, Uncharacterized protein conserved in bacteria
(DUF2239). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 173
Score = 29.1 bits (66), Expect = 4.5
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 459 ACTGLHGANRLASNSLLEALVFARRAVQPS-----IDHKKSTSIDL 499
T G RLAS L E + + A + D +DL
Sbjct: 2 TYTAFAGHRRLASGPLPEVALAVKAAAGTAAPVLVFDDATGRPVDL 47
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 29.7 bits (67), Expect = 4.7
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 89 FDFSVIGSGVAGLCYALEVAKHG-TVAVITK 118
FD+ ++G+G++G+ A +A+ V V+ K
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEK 32
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 29.9 bits (68), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 93 VIGSGVAGLCYALEVAKHGTVAVITKAEPH 122
+IG+G AGL A E+ K G + +A+P
Sbjct: 9 IIGAGPAGLTAAYELLKRGYPVTVLEADPV 38
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 29.7 bits (67), Expect = 5.5
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 202 HHRIVHAADMT--------GREIERALLEA----VVSDPNISVFEHHFAIDLLTTL 245
R + A D+ IERAL +A V S+FE A DLL L
Sbjct: 548 GERPIRAGDIAVLVRSRNEAAAIERALKKAGIIPVYLSNRSSLFETLEAQDLLALL 603
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 29.7 bits (67), Expect = 5.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 87 KYFDFSVIGSGVAGLCYALEVAKHG-TVAVI 116
+ D V+G G AGL A +V++ G +V I
Sbjct: 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCI 57
>gnl|CDD|179027 PRK00441, argR, arginine repressor; Provisional.
Length = 149
Score = 28.5 bits (64), Expect = 5.7
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 46 QRELSWFLRFQRFNFSHSPVSENWKSLRTVPVLSCLRDGSVKY 88
Q EL+ L+ F+ + + VS + K L+ + VLS DG KY
Sbjct: 21 QEELAEELKKMGFDVTQATVSRDIKELKLIKVLS--NDGKYKY 61
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 29.5 bits (67), Expect = 6.4
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 90 DFSVIGSGVAGLCYALEVAKHGT--VAVITKAEPHESNTNYAQGGVSAV 136
D ++G G GL AL +A+ G VA+I VSA+
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSAL 49
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 29.6 bits (67), Expect = 6.8
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 90 DFSVIGSGVAGLC--YALEVAKHGTVAVITKAE 120
D +V+G+GV+GL YAL +KHG ++T+A
Sbjct: 14 DVAVVGAGVSGLAAAYAL-ASKHGVNVLVTEAR 45
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 29.3 bits (66), Expect = 6.8
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 27/119 (22%)
Query: 328 IKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERAEL--------APRDVVARSI 379
+ K R N L+ E+++ G + ++ +E+ + L DER +L A R+ +++ I
Sbjct: 2 LDRKLLRNNPDLVKESLKARGLSV-DIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI 60
Query: 380 D--------------DQLKKRNEKYVLLDISHKPTE----KILSHFPNIAAECLKYGLD 420
+LK+ E+ L + K E L PNI E + G D
Sbjct: 61 GKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 29.1 bits (66), Expect = 9.1
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 519 MHNILRRTKEVRKELQSIMWRYVGIVRSTTSLQTAEWRIDELEAEWETYL 568
++N LR + ++L + + T+L D++ ++W +
Sbjct: 19 IYNSLRSPEVFIRQLFYTLLK--------TALNAC--TYDDVLSDWRKHE 58
>gnl|CDD|237613 PRK14109, PRK14109, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 1007
Score = 29.0 bits (66), Expect = 9.7
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 160 DETVRVVCTEGPDRIRELIA-IGASFDRGEDGNLHLAREGGHSHHRIVHAADMTGR-EIE 217
E + + + R R L+A +GAS G+ HL + + E+
Sbjct: 74 AELLAALRADPGLRGR-LLAVLGASSALGD----HLVAHPEDWRALLRDPVALPSAEELR 128
Query: 218 RALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAV 251
ALLEAV +DP + + G +AV
Sbjct: 129 AALLEAVGADPGAPTP--------VAGVTGAEAV 154
>gnl|CDD|202027 pfam01884, PcrB, PcrB family. This family contains proteins that
are related to PcrB. The function of these proteins is
unknown.
Length = 231
Score = 28.6 bits (64), Expect = 9.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 246 DGPDAVCHGVDTLNVETQEVVRFISKVTLL 275
G DA+ G T V VVR I KV L
Sbjct: 31 SGTDAIMIGGSTGGVTLDNVVRLIKKVYGL 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,997,051
Number of extensions: 3266083
Number of successful extensions: 3367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 125
Length of query: 647
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 544
Effective length of database: 6,369,140
Effective search space: 3464812160
Effective search space used: 3464812160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.4 bits)