Your job contains 1 sequence.
>006398
MDFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRS
RGSKSRDESRNHDRRKERDSSCHRSWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGR
DRNRDRGRDRDRRERDHDTDRDREKDKEKEREKSHRSGSQSERYRSDRDERERSRDREVI
ERERSRDREVIERERSRDREVIERERSRDRELKEREKERESRDNDKESRDNVMAICRRPK
EKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGV
GYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGA
RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL
NGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGS
ATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTA
SVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAG
FVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006398
(647 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 764 2.4e-85 2
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 463 7.9e-75 3
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 463 2.1e-74 3
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 463 2.1e-74 3
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 463 3.3e-74 3
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 463 3.3e-74 3
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 463 3.3e-74 3
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 458 1.4e-73 3
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 463 1.8e-73 3
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 463 1.8e-73 3
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 461 1.1e-71 3
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 429 8.5e-70 3
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 434 2.3e-64 2
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 368 1.5e-57 3
UNIPROTKB|D4A5G0 - symbol:Rbm39 "Protein Rbm39" species:1... 346 1.9e-54 4
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 379 1.0e-53 3
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 434 6.6e-52 3
WB|WBGene00021921 - symbol:Y55F3AM.3 species:6239 "Caenor... 321 1.8e-51 3
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 438 1.2e-50 3
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 463 1.8e-50 2
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 433 1.0e-49 3
UNIPROTKB|H0Y4X3 - symbol:RBM39 "RNA-binding protein 39" ... 346 3.4e-49 3
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 337 2.8e-48 3
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 337 2.8e-48 3
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 286 1.2e-47 3
UNIPROTKB|F1MY46 - symbol:RBM23 "Uncharacterized protein"... 426 2.3e-46 2
UNIPROTKB|F6XHX3 - symbol:RBM23 "Uncharacterized protein"... 390 1.5e-45 3
UNIPROTKB|J9P448 - symbol:RBM23 "Uncharacterized protein"... 390 8.3e-45 3
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 404 1.7e-40 2
UNIPROTKB|Q5QP23 - symbol:RBM39 "RNA-binding protein 39" ... 265 8.2e-29 2
UNIPROTKB|G3V546 - symbol:RBM23 "Probable RNA-binding pro... 298 2.8e-26 1
UNIPROTKB|Q5QP21 - symbol:RBM39 "RNA-binding protein 39" ... 241 4.9e-26 2
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 155 3.9e-20 4
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 202 6.6e-18 2
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 202 6.6e-18 2
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 214 7.1e-17 2
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 154 2.0e-15 2
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 154 2.1e-15 2
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 154 2.4e-15 2
ZFIN|ZDB-GENE-050706-131 - symbol:u2af2a "U2 small nuclea... 134 4.4e-15 3
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 175 4.6e-15 2
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 154 5.0e-15 2
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 154 5.0e-15 2
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 151 5.1e-15 2
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 154 8.3e-15 2
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot... 140 1.6e-14 3
ZFIN|ZDB-GENE-040426-1881 - symbol:u2af2b "U2 small nucle... 144 2.8e-14 3
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 184 3.7e-14 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 184 3.7e-14 2
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 191 4.0e-14 2
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 155 7.6e-14 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 187 8.4e-14 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 180 1.3e-13 2
MGI|MGI:98886 - symbol:U2af2 "U2 small nuclear ribonucleo... 131 2.7e-13 3
RGD|1597319 - symbol:LOC690372 "similar to U2 (RNU2) smal... 131 2.7e-13 3
UNIPROTKB|Q5QP22 - symbol:RBM39 "RNA-binding protein 39" ... 138 2.7e-13 2
UNIPROTKB|P26368 - symbol:U2AF2 "Splicing factor U2AF 65 ... 130 3.5e-13 3
UNIPROTKB|Q24JZ8 - symbol:U2AF2 "Uncharacterized protein"... 128 5.9e-13 3
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 149 9.2e-13 2
UNIPROTKB|E2R0G3 - symbol:U2AF2 "Uncharacterized protein"... 126 9.5e-13 3
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 137 1.5e-12 4
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 147 1.5e-12 2
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 137 1.5e-12 4
TAIR|locus:2028451 - symbol:NUC-L1 "nucleolin like 1" spe... 184 2.6e-12 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 194 4.3e-12 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 166 4.4e-12 3
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 166 6.7e-12 3
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 170 6.7e-12 3
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 165 1.1e-11 3
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 168 1.3e-11 3
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 168 1.3e-11 3
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 173 1.5e-11 2
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 168 1.6e-11 3
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 133 1.9e-11 3
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd... 108 2.4e-11 3
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 166 4.0e-11 2
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 143 4.5e-11 2
UNIPROTKB|G3V2B4 - symbol:RBM23 "Probable RNA-binding pro... 160 5.8e-11 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 175 6.3e-11 3
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 183 6.9e-11 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 137 7.4e-11 4
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 156 1.0e-10 3
TAIR|locus:2206001 - symbol:AT1G60900 species:3702 "Arabi... 100 1.1e-10 3
UNIPROTKB|K7ENG2 - symbol:U2AF2 "Splicing factor U2AF 65 ... 126 1.2e-10 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 180 1.3e-10 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 156 1.8e-10 3
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 164 1.8e-10 2
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 156 1.8e-10 3
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 158 2.1e-10 3
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 164 3.3e-10 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 175 3.6e-10 3
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 176 4.1e-10 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 176 4.1e-10 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 172 4.4e-10 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 179 5.2e-10 1
TAIR|locus:2115280 - symbol:ATU2AF65A species:3702 "Arabi... 100 6.6e-10 3
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 140 7.2e-10 3
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 160 7.9e-10 3
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 170 7.9e-10 2
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 174 9.1e-10 1
WARNING: Descriptions of 927 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 764 (274.0 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 179/323 (55%), Positives = 206/323 (63%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RDQRTVFAYQ+ LKA ERDVYEFFS+AGKVRDVRLIMDRNSRRSKGVGY+EFYDVMSVPM
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPM 224
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AIALSGQ LGQPVMVKPSEAEKNL Q R+LYVGNLHFNM+
Sbjct: 225 AIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPAD-------RKLYVGNLHFNMS 277
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNA-LNLNGQLEIVGRAI 431
E QLRQ+FE FG VELVQLPLD ETG CKGFGF+QF +LE ++ A + LNG+LEI GR I
Sbjct: 278 ELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTI 337
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTP 491
KVS+V+D G QD A + L+LNA+SRA+LMQKLDRSG AT+I GS P
Sbjct: 338 KVSSVSDHIGTQD-SAPKSADFDDDDGGGLALNAQSRAMLMQKLDRSGIATSIVGSLGVP 396
Query: 492 AVNXXXXXXXXXXXXXXXXXV-STLVPPLVQGTV--PTHPGQLGTALQVPTASVPIFDTI 548
+N + +T +P V V P+ L T + P FD
Sbjct: 397 GLNGAAFNQPGMNPSFPTSVLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLE 456
Query: 549 ---GVPSECLLLKNMFDPKNETY 568
V EC + + P N Y
Sbjct: 457 IRDDVADEC----SKYGPVNHIY 475
Score = 369 (135.0 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 73/136 (53%), Positives = 98/136 (72%)
Query: 512 VSTLVPPLVQGTVPTHPGQ---LGTALQVPTASVPIF--DTIGVPSECLLLKNMFDPKNE 566
V +L P + G PG T++ +PT ++P F + +G+PSECLLLKNMFDP E
Sbjct: 390 VGSLGVPGLNGAAFNQPGMNPSFPTSV-LPTTAIPSFVNEHVGLPSECLLLKNMFDPATE 448
Query: 567 TYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG 626
T FD++I++DV ECSK+G + HI+V+K+SAGFVYLRF++ ++A AAQRA+H RWFA
Sbjct: 449 TEPNFDLEIRDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQ 508
Query: 627 KMITATFMVPQTYEAK 642
KMI+ATFM P YEAK
Sbjct: 509 KMISATFMPPHEYEAK 524
Score = 109 (43.4 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
Identities = 30/84 (35%), Positives = 44/84 (52%)
Query: 1 MDFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRS 60
M+FDEYEYLEK VE + +K+ +G N +SE R R + E E +++ S
Sbjct: 1 MEFDEYEYLEKTVEEGAGSNKKKEESG--NERSERSYRKREGGERQGE--EGGEEERVSS 56
Query: 61 RGSKSR-DESRNHDRRKERDSSCH 83
R KSR D N +++R+ H
Sbjct: 57 RSKKSRGDGEENGGGKRDRERERH 80
Score = 72 (30.4 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDE--KVED--YDDDGHRSRGSKS 65
E++ + ++ NG G + +R R RSS+ K E KV + D + R R SK
Sbjct: 52 ERVSSRSKKSRGDGEENGGGK-RDRERERHRSSRDKDRERDKVREGSRDKESDRERSSKE 110
Query: 66 RDES-----RNHDRRK--ERDSS 81
RD S R+ +RR+ +R SS
Sbjct: 111 RDRSDRDKPRDRERREREKRSSS 133
Score = 69 (29.3 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 34 EDRVRSRSSKCKSD-EKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
E+RV SRS K + D E+ D R R SRD+ R D+ +E
Sbjct: 51 EERVSSRSKKSRGDGEENGGGKRDRERERHRSSRDKDRERDKVRE 95
Score = 56 (24.8 bits), Expect = 9.5e-80, Sum P(2) = 9.5e-80
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSD-EKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
+E++ K DR RS + +SD +K D + R R +S SR ++ E
Sbjct: 88 RERDKVREGSRDKESDRERSSKERDRSDRDKPRDRE---RREREKRSSSRSRREEKEPE 143
Score = 55 (24.4 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSR--SSKCKSDEKVEDYDDDGHRSRGSKSRD 67
+K + +KE++ ++ D E R R + SS+ + +EK + + G R K +D
Sbjct: 99 DKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSRRHRDK-KD 157
Query: 68 ESRNHDRRKER 78
E R +R
Sbjct: 158 EPEADPERDQR 168
Score = 53 (23.7 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK 76
E +++KE+ D S++R RS K + E+ E RSR + E R+
Sbjct: 95 EGSRDKES---DRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSRR 151
Query: 77 ERD 79
RD
Sbjct: 152 HRD 154
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 463 (168.0 bits), Expect = 7.9e-75, Sum P(3) = 7.9e-75
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 244 (91.0 bits), Expect = 7.9e-75, Sum P(3) = 7.9e-75
Identities = 48/97 (49%), Positives = 68/97 (70%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 422 TQCFQLSNMFNPQTEEEAGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 481
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY + FPDS+
Sbjct: 482 AAIAAVNALHGRWFAGKMITAAYVPLPTYHSLFPDSM 518
Score = 79 (32.9 bits), Expect = 7.9e-75, Sum P(3) = 7.9e-75
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K +S E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHDRKRSRSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
R S+ R SR+ +RR+ R S
Sbjct: 67 R-SRERKRSRSKERRRSRSRS 86
Score = 53 (23.7 bits), Expect = 4.2e-72, Sum P(3) = 4.2e-72
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ +S++R RSR K +S E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHDRKRSRSKERKRSRDRERKKSRSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 463 (168.0 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 240 (89.5 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 482
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 483 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
Score = 79 (32.9 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 463 (168.0 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 240 (89.5 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 482
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 483 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
Score = 79 (32.9 bits), Expect = 2.1e-74, Sum P(3) = 2.1e-74
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 463 (168.0 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 240 (89.5 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 482
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 483 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
Score = 77 (32.2 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 9 LEKMVENPEPAKEKE--TANGDGN-----VKSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + +ANG KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLNSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 463 (168.0 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 240 (89.5 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 476
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 477 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 513
Score = 77 (32.2 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 9 LEKMVENPEPAKEKE--TANGDGN-----VKSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + +ANG KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLNSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 463 (168.0 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 240 (89.5 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 482
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 483 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
Score = 77 (32.2 bits), Expect = 3.3e-74, Sum P(3) = 3.3e-74
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 9 LEKMVENPEPAKEKE--TANGDGN-----VKSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + +ANG KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLNSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 3.3e-72, Sum P(3) = 3.3e-72
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 458 (166.3 bits), Expect = 1.4e-73, Sum P(3) = 1.4e-73
Identities = 106/237 (44%), Positives = 139/237 (58%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ Y+EF D SVP+
Sbjct: 146 RDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPL 205
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI LSGQ LLG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 206 AIGLSGQRLLGVPIIVQASQAEKN-------RAAALANNLQKGSAGPMRLYVGSLHFNIT 258
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG ++ +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 259 EDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNG-FELAGRPM 317
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 318 KVGHVTERTDAST--ASSFLDNDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 371
Score = 240 (89.5 bits), Expect = 1.4e-73, Sum P(3) = 1.4e-73
Identities = 51/130 (39%), Positives = 76/130 (58%)
Query: 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKED 578
+ T +PG L + VPT + + + C L NMF+P +E ++++I++D
Sbjct: 384 MAAATAAMNPG-LSFNINVPTNQALNLPSQPIATHCFQLSNMFNPNSENDHGWEIEIQDD 442
Query: 579 VEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
V EC+K G + HI+V+K SA G VY++ +A AA ALHGRWF GKMITA ++
Sbjct: 443 VIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAAVSALHGRWFGGKMITAAYVPLP 502
Query: 638 TYEAKFPDSI 647
TY FP+S+
Sbjct: 503 TYHNLFPESV 512
Score = 76 (31.8 bits), Expect = 1.4e-73, Sum P(3) = 1.4e-73
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P + ++ + +G+ +S+ R RSR K KS E+ + +D RS
Sbjct: 7 IEAMLEAPYKKDDNKSLSTNGHEERSKKKKRSKSRSRSRDRKRSKSRERKKSHDR--RRS 64
Query: 61 RGSKSRDESRNHDRRKERDSS 81
R S+ R SR+ +RR+ R S
Sbjct: 65 R-SRDRKRSRSKERRRSRSRS 84
Score = 67 (28.6 bits), Expect = 1.3e-72, Sum P(3) = 1.3e-72
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 15 NPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
N + K+ +S DR RS+S + KS ++ D RSR SK R SR+
Sbjct: 26 NGHEERSKKKKRSKSRSRSRDRKRSKSRERKKSHDRRRSRSRDRKRSR-SKERRRSRSRS 84
Query: 74 RRK 76
R +
Sbjct: 85 RER 87
Score = 48 (22.0 bits), Expect = 1.2e-70, Sum P(3) = 1.2e-70
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRG 62
+E +K ++ +++++ + KS DR RSRS + +S K R RG
Sbjct: 29 EERSKKKKRSKSRSRSRDRKRSKSRERKKSHDRRRSRSRDRKRSRSKERRRSRSRSRERG 88
Query: 63 SKSR 66
+ R
Sbjct: 89 GRYR 92
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 463 (168.0 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 231 (86.4 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 476
Query: 611 SAFAAQRALHGRWFA-GKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFA GKMITA ++ TY FPDS+
Sbjct: 477 AAIAAVNALHGRWFAAGKMITAAYVPLPTYHNLFPDSM 514
Score = 79 (32.9 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 2.9e-71, Sum P(3) = 2.9e-71
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 463 (168.0 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 231 (86.4 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 417 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 476
Query: 611 SAFAAQRALHGRWFA-GKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFA GKMITA ++ TY FPDS+
Sbjct: 477 AAIAAVNALHGRWFAAGKMITAAYVPLPTYHNLFPDSM 514
Score = 79 (32.9 bits), Expect = 1.8e-73, Sum P(3) = 1.8e-73
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 2.9e-71, Sum P(3) = 2.9e-71
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 461 (167.3 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
Identities = 107/237 (45%), Positives = 139/237 (58%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF D SVP+
Sbjct: 164 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPL 223
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 224 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMASMLQRGGAGPMRLYVGSLHFNIT 276
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ FA E A+ AL LNG E+ GR +
Sbjct: 277 EDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNG-FELAGRPM 335
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT++S A++ + L R LM +L G+ I +A
Sbjct: 336 KVGHVTERSDASS--ASSFLDNDELERTGIDLGTTGRLQLMARL-AEGTGLQIPAAA 389
Score = 230 (86.0 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
Identities = 55/135 (40%), Positives = 81/135 (60%)
Query: 513 STLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFD 572
++ PPL+ P +PG + A+ +PT P+ + CL L NMF+P+ E +D
Sbjct: 407 ASATPPLI----P-NPG-MNQAMNLPTQ--PL------ATHCLQLSNMFNPQMENEPGWD 452
Query: 573 MDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITA 631
++I++DV EC K G + HI+V+K+SA G VY++ A A +LHGRWFAGKMITA
Sbjct: 453 IEIRDDVIEECRKHGGVIHIYVDKNSAQGNVYVKCPTIPVAMAVVSSLHGRWFAGKMITA 512
Query: 632 TFMVPQTYEAKFPDS 646
++ TY FPD+
Sbjct: 513 AYVPLPTYHNLFPDA 527
Score = 65 (27.9 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRG 62
D+++ +E M+E P E ++++ +G+ + + + RS S+ S + +SR
Sbjct: 3 DDFD-VEAMLEAPYRKGESKSSSANGHNEERSKKKRRSHSRSPSPGRRRSRSGGRKKSRE 61
Query: 63 SK-SRDESRNHDRRKERDSS 81
+ SR R R KER S
Sbjct: 62 RRRSRSRERKPSRSKERKRS 81
Score = 61 (26.5 bits), Expect = 2.9e-71, Sum P(3) = 2.9e-71
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 15 NPEPAKEKETANGDGNVKSEDRVRSRSSK-CKSDEKVEDYD---DDGHRSRGSKS 65
+P P + + + G + R RSR K +S E+ D G RSRG KS
Sbjct: 43 SPSPGRRRSRSGGRKKSRERRRSRSRERKPSRSKERKRSRSRSKDRGGRSRGRKS 97
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 429 (156.1 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 104/238 (43%), Positives = 138/238 (57%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVRLI ++R KG+ Y+EF D SV +
Sbjct: 234 RDARTVFCIQLSQRVRARDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVAL 293
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
A+ LSGQ LLG P+MV+ ++AEKN +Q RLYVG+LHFN+T
Sbjct: 294 ALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPM------RLYVGSLHFNIT 347
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG ++ +QL +D ETG KG+GF+ + +DA+ AL LNG E+ GR +
Sbjct: 348 EDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNG-FELAGRLM 406
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXX-LSLNARSRALLMQKL-DRSGSATTIAGS 487
KV VT++ L NTT + L A R LM KL + +G A A +
Sbjct: 407 KVGNVTER-----LDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAEGAGLAVPQAAA 459
Score = 236 (88.1 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 45/99 (45%), Positives = 66/99 (66%)
Query: 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDS-AGFVYLRFEN 608
+ ++C +L NMFDP+ ET +D++I++DV EC+K G + HI V+ S G VY++ +
Sbjct: 481 IATQCFILSNMFDPRTETNPTWDVEIRDDVLEECAKHGGVLHIHVDTISHTGTVYVKCPS 540
Query: 609 TQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
T +A A ALHGRWFAG++ITA ++ Y FPDSI
Sbjct: 541 TTTAVLAVNALHGRWFAGRVITAAYVPVINYHTMFPDSI 579
Score = 73 (30.8 bits), Expect = 8.5e-70, Sum P(3) = 8.5e-70
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 19 AKEKETANGDGNVKSE-DRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR-DESRNHDRRK 76
+K + +G + KS DR RSS D++ + D G R R + D R +R +
Sbjct: 66 SKRSRSRSGSRDGKSRRDRGNERSSHRDKDKERDRNRDGGDRDRHRREGGDRDRERERER 125
Query: 77 ERDSS 81
ERD S
Sbjct: 126 ERDRS 130
Score = 62 (26.9 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 20 KEKET-ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE----SRNHDR 74
K+KE N DG DR R R + E+ + + D RSR S+SRDE R DR
Sbjct: 94 KDKERDRNRDGG--DRDRHR-REGGDRDRERERERERD--RSRRSRSRDERGGGGRYGDR 148
Query: 75 RKERDS 80
K+R S
Sbjct: 149 DKDRRS 154
Score = 60 (26.2 bits), Expect = 1.9e-68, Sum P(3) = 1.9e-68
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERD 79
K++ + + G KS RSR + +S + D R R S R+ R+H R ++R+
Sbjct: 150 KDRRSRDRRGGSKSLQVDRSRDKRRRSRSR------DQQRKRLSPIRERKRSHSRSRDRN 203
Query: 80 S 80
S
Sbjct: 204 S 204
Score = 58 (25.5 bits), Expect = 3.2e-68, Sum P(3) = 3.2e-68
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 21 EKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERD 79
E NG G S + +S+ S+ +S + DG +SR + + S + D+ KERD
Sbjct: 49 ENGPRNGSGGGSSHKK-QSKRSRSRSGSR------DG-KSRRDRGNERSSHRDKDKERD 99
Score = 55 (24.4 bits), Expect = 6.5e-68, Sum P(3) = 6.5e-68
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 27 GDGNVKSE-DRVRSRSSKCKS-DEK-----VEDYDDDGHRSR----GSKSRDESRNHDRR 75
GD + + E +R R RS + +S DE+ D D D RSR GSKS R+ D+R
Sbjct: 115 GDRDRERERERERDRSRRSRSRDERGGGGRYGDRDKD-RRSRDRRGGSKSLQVDRSRDKR 173
Query: 76 KERDS 80
+ S
Sbjct: 174 RRSRS 178
Score = 55 (24.4 bits), Expect = 6.5e-68, Sum P(3) = 6.5e-68
Identities = 27/82 (32%), Positives = 37/82 (45%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFD +E M+E P K +A G S R RS SS +DY ++G R+
Sbjct: 4 DFD----VEAMLEAPY-MKNNVSAGSGG---SGGRKRSGSSPGGGGGHDDDYAENGPRNG 55
Query: 62 ---GSKSRDES-RNHDRRKERD 79
GS + +S R+ R RD
Sbjct: 56 SGGGSSHKKQSKRSRSRSGSRD 77
Score = 53 (23.7 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 24 TANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNH-DRRKER 78
+ G + K R RSRS S+ + + HR + K RD +R+ DR + R
Sbjct: 56 SGGGSSHKKQSKRSRSRSGSRDGKSRRDRGNERSSHRDK-DKERDRNRDGGDRDRHR 111
Score = 45 (20.9 bits), Expect = 7.3e-67, Sum P(3) = 7.3e-67
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 36 RVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK 76
R RSR + K + + RSR SR N RR+
Sbjct: 175 RSRSRDQQRKRLSPIRERKRSHSRSRDRNSRRRGTNSPRRR 215
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 434 (157.8 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 101/228 (44%), Positives = 134/228 (58%)
Query: 263 QICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPL 322
Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+AI L+GQ +
Sbjct: 2 QLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRV 61
Query: 323 LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFE 382
LG P++V+ S+AEKN RLYVG+LHFN+TED LR +FE
Sbjct: 62 LGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFE 114
Query: 383 PFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVSAVTDQS 440
PFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +KV VT+++
Sbjct: 115 PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPMKVGHVTERT 173
Query: 441 GLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
A++ + L R LM +L G+ I +A
Sbjct: 174 DASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 218
Score = 240 (89.5 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 266 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 325
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 326 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 362
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 368 (134.6 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 79/187 (42%), Positives = 112/187 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD+RTVF Q+ + R++Y+FF +AG VRD +++ D+ S RSKGV YVEF SV
Sbjct: 237 RDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQA 296
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AIALSG+ LLG PV+V+ +EAEKN RL V N+HFN+T
Sbjct: 297 AIALSGKRLLGLPVIVQLTEAEKN----RKAREAAELARAASAEIPFHRLCVSNIHFNLT 352
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIK 432
++ ++ +FEPFG +E V L D+ KGFG++Q+ ARNAL +NG ++ GR ++
Sbjct: 353 DEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNG-FDLAGRNMR 411
Query: 433 VSAVTDQ 439
V D+
Sbjct: 412 VCLGNDK 418
Score = 196 (74.1 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 40/99 (40%), Positives = 62/99 (62%)
Query: 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS-KFGKLKHIFVEKDSAGFVYLRFEN 608
+ S C LL+NMF+P ET + ++++DV+ EC K+GK+ HI V + G ++++FEN
Sbjct: 503 IRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFEN 562
Query: 609 TQSAFAAQRALHGRWFAGKMITATFMVPQT-YEAKFPDS 646
A A LH RWF G+ I A+ + P+T Y KFP++
Sbjct: 563 ADFAEKAITGLHQRWFGGRTIKASIL-PETDYYFKFPNA 600
Score = 71 (30.1 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 25/76 (32%), Positives = 35/76 (46%)
Query: 15 NPEPAKEKETANGDGNVKSEDRVRS-RSSKCK--SDEKVEDYDDDG----HRSRGSKSRD 67
+P P ++ V+S DR RS RSS+ + S YDD + SR S+SR
Sbjct: 130 SPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSR- 188
Query: 68 ESRNHDRRKERDSSCH 83
R ++ R R S H
Sbjct: 189 --RRYEERSSRSSRAH 202
Score = 55 (24.4 bits), Expect = 7.1e-56, Sum P(3) = 7.1e-56
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 34 EDRVRSRSSKCKSDEKVEDY-DDD-GHRSRGSKSRDESRNHD-RRKERD 79
E+R SRSS+ D ED DDD H + S+SR R+ +ERD
Sbjct: 192 EER-SSRSSRAH-DYDYEDLRDDDRSHERKRSRSRPRERSSKLSEEERD 238
Score = 49 (22.3 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 32 KSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
+S R RSS+ + DYD + RD+ R+H+R++ R
Sbjct: 186 RSRRRYEERSSR---SSRAHDYDYED-------LRDDDRSHERKRSR 222
Score = 40 (19.1 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 32 KSEDRVRSRSSKCKSDEK 49
+S R R RSSK +E+
Sbjct: 220 RSRSRPRERSSKLSEEER 237
Score = 37 (18.1 bits), Expect = 5.4e-54, Sum P(3) = 5.4e-54
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERD 79
+ +++ D V + R+ +S DY S +SR+ R ++RD
Sbjct: 93 QREDSGYNDDVVTNSSSHRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRD 152
Query: 80 SS 81
S
Sbjct: 153 RS 154
>UNIPROTKB|D4A5G0 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01622 EMBL:AC118414 IPI:IPI00951290
ProteinModelPortal:D4A5G0 Ensembl:ENSRNOT00000068388
ArrayExpress:D4A5G0 Uniprot:D4A5G0
Length = 440
Score = 346 (126.9 bits), Expect = 1.9e-54, Sum P(4) = 1.9e-54
Identities = 72/132 (54%), Positives = 87/132 (65%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 141 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 200
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 201 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 253
Query: 374 EDQLRQVFEPFG 385
ED LR +FEPFG
Sbjct: 254 EDMLRGIFEPFG 265
Score = 118 (46.6 bits), Expect = 1.9e-54, Sum P(4) = 1.9e-54
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA 599
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA
Sbjct: 392 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSA 439
Score = 71 (30.1 bits), Expect = 1.9e-54, Sum P(4) = 1.9e-54
Identities = 26/78 (33%), Positives = 38/78 (48%)
Query: 12 MVENPEPAKEKE--TANGDGN-----VKSEDRVRSRSSK-CKSDEKVEDYDDDGHRSRGS 63
M+E P E + +ANG KS+ R RS K KS E+ D + +S+ S
Sbjct: 1 MLEAPYKKDENKLNSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSK-S 59
Query: 64 KSRDESRNHDRRKERDSS 81
+ R SR+ +RR+ R S
Sbjct: 60 RERKRSRSKERRRSRSRS 77
Score = 64 (27.6 bits), Expect = 1.9e-54, Sum P(4) = 1.9e-54
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 405 FVQFARLEDARNALN-LNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL 463
F +F+ E A+ AL LNG E+ GR +KV VT+++ A++ + L
Sbjct: 264 FGRFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDL 320
Query: 464 NARSRALLMQKLDRSGSATTIAGSA 488
R LM +L G+ I +A
Sbjct: 321 GTTGRLQLMARL-AEGTGLQIPPAA 344
Score = 60 (26.2 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGH-CKGFGFVQFARLEDARNALN 419
R ++ L + L + F G V V++ D KG +V+F + A+
Sbjct: 144 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 203
Query: 420 LNGQLEIVGRAIKVSA 435
L GQ ++G I V A
Sbjct: 204 LTGQ-RVLGVPIIVQA 218
Score = 58 (25.5 bits), Expect = 4.3e-53, Sum P(4) = 4.3e-53
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 20 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 78
Query: 67 D 67
D
Sbjct: 79 D 79
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 379 (138.5 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 82/187 (43%), Positives = 113/187 (60%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD+RT+F Q+ + +++ FF + G V++ +++ DR S RSKGVGYVEF D SV
Sbjct: 171 RDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAP 230
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++ + +EAEKN RLYVGN+HF++
Sbjct: 231 AIQLTGQKLLGIPIIAQLTEAEKN-----RQARNSEASSGNKHSAPFHRLYVGNIHFSID 285
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIK 432
E+ L+ VFEPFG +E VQL DETG +G+GFVQF AR AL +NG ++ GRAI+
Sbjct: 286 ENDLQSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGY-DLGGRAIR 344
Query: 433 VSAVTDQ 439
V D+
Sbjct: 345 VGLGNDK 351
Score = 137 (53.3 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 566 ETYEEFDMDIKEDVEGECS-KFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF 624
E E + ++++DV EC K+G + HI ++ +S G +YL+F+ Q A + L+GR+F
Sbjct: 468 EEGESWVKELEDDVRAECEEKYGHVVHIALDPNSQGDIYLKFDRVQGGENAIKGLNGRFF 527
Query: 625 AGKMITATFMVPQTYEAKF 643
G+ ITA +V Y + F
Sbjct: 528 GGRQITAQPVVDAVYSSLF 546
Score = 70 (29.7 bits), Expect = 1.0e-53, Sum P(3) = 1.0e-53
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSS---KCKSDEKVEDYDDDGHRSRGS-KSRDESRN-H 72
P E +ANG +S R RSR S + + D +DY +G RG ++R SR+ +
Sbjct: 68 PRSEHGSANGSH--RSRKRSRSRDSDRRRARRDRHGDDYRSNGDYYRGGGRARTRSRSPY 125
Query: 73 DRRKERDS 80
D R R S
Sbjct: 126 DDRYYRPS 133
Score = 60 (26.2 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 14 ENPEPAKEKETANG-DGNVKSEDRVRSRSSKCKSDEKVEDYD-DDGHRSRGSKSRDESRN 71
+ P+ + E + D +S DR R R + + + +D D DD RS S+ + +
Sbjct: 19 QRPDDRSKAENGDRRDERDRSWDRDRRRRDRSRDRRRSKDVDGDDDMRSPRSEHGSANGS 78
Query: 72 HDRRKE---RDS 80
H RK RDS
Sbjct: 79 HRSRKRSRSRDS 90
Score = 55 (24.4 bits), Expect = 3.7e-52, Sum P(3) = 3.7e-52
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 25 ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERD 79
+NGD + R R+RS YDD +R G RDE R+ +RR R+
Sbjct: 106 SNGD-YYRGGGRARTRSRS--------PYDDRYYRPSGRSRRDE-RDEERRPRRE 150
Score = 45 (20.9 bits), Expect = 4.1e-51, Sum P(3) = 4.1e-51
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 66 RDESRNHDRRKERDSS 81
R ++ N DRR ERD S
Sbjct: 24 RSKAENGDRRDERDRS 39
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 434 (157.8 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 94/195 (48%), Positives = 126/195 (64%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+
Sbjct: 154 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 213
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++V+ S+AEKN + RLYVG+LHFN+T
Sbjct: 214 AIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGTGGPMRLYVGSLHFNIT 266
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL LNG E+ GR +
Sbjct: 267 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPM 325
Query: 432 KVSAVTDQ-SGLQDL 445
++ VT++ G D+
Sbjct: 326 RIGHVTERLDGSTDI 340
Score = 95 (38.5 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 24 TANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRD----ESRNHDRRKE 77
+A+G+ + K R S+S + + + D D D HR RGS+S D ESR+ DRR+E
Sbjct: 56 SASGEASKKKRSRSHSKS-RDRKHSRSRDRDRDRHRRRGSRSXDRRHSESRSRDRRRE 112
Score = 75 (31.5 bits), Expect = 8.1e-50, Sum P(3) = 8.1e-50
Identities = 25/89 (28%), Positives = 38/89 (42%)
Query: 1 MDFDEYEY-LEKMVENPEPAKEKETANGDGNVKSEDRV-RSRSSKCKSDEKVEDYDDDGH 58
M D+++ +E M+E P +E E + N +S + S SS S G
Sbjct: 1 MASDDFDIVIEAMLEAPYKKEEDEQQRKEINEESPNTTTNSTSSTSNSGSGTSGSSASGE 60
Query: 59 RSRGSKSRDES----RNHDRRKERDSSCH 83
S+ +SR S R H R ++RD H
Sbjct: 61 ASKKKRSRSHSKSRDRKHSRSRDRDRDRH 89
Score = 64 (27.6 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 574 DIKEDV-EGECSKFGKLKHIFVEKDS-----AGFVYLRFENTQSAFAAQRALHGRWFAGK 627
+I ED+ G FGK+ +I + KDS G+ ++ F +++ A A L+G AG+
Sbjct: 264 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 323
Query: 628 MIT---ATFMVPQTYEAKFPD 645
+ T + + + FPD
Sbjct: 324 PMRIGHVTERLDGSTDITFPD 344
Score = 38 (18.4 bits), Expect = 6.6e-52, Sum P(3) = 6.6e-52
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ G VP G L A + + + S+C L ++F P+
Sbjct: 379 LNGAVPL--GALNPAALTALSPALNLASQAIASQCFQLSSLFTPQ 421
>WB|WBGene00021921 [details] [associations]
symbol:Y55F3AM.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002009 "morphogenesis
of an epithelium" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723
GO:GO:0040035 EMBL:FO081813 HSSP:Q14103 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 GeneID:176922 KEGG:cel:CELE_Y55F3AM.3
UCSC:Y55F3AM.3a CTD:176922 NextBio:894594 RefSeq:NP_500025.1
ProteinModelPortal:Q9N368 SMR:Q9N368 IntAct:Q9N368 STRING:Q9N368
PRIDE:Q9N368 EnsemblMetazoa:Y55F3AM.3a WormBase:Y55F3AM.3a
InParanoid:Q9N368 ArrayExpress:Q9N368 Uniprot:Q9N368
Length = 580
Score = 321 (118.1 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 84/267 (31%), Positives = 122/267 (45%)
Query: 227 ESRDNVMAICRRXXXXXXXXXXXXXXXRDQRTVFAYQICLKADERDVYEFFSRAGKVRDV 286
E RD VM R RDQRT+ QI RD+ EFFS G VRDV
Sbjct: 141 ERRD-VMPFNPRHSPPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDV 199
Query: 287 RLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXX 346
R+I D + RSKG+ YVEF+D SVP+ +AL+GQ L+G P+ ++ + AE+N +
Sbjct: 200 RIITDSRTGRSKGICYVEFWDEESVPLGLALNGQRLMGAPLQIQRTCAERN--RAANSSV 257
Query: 347 XXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFV 406
+ V NLH + E +R +FE FG +E + L +D +GF +
Sbjct: 258 ASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENRGFATI 317
Query: 407 QFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG----LQDLGANTTXXXXXXXXXXLS 462
F +DA+ + E+ GR I++S + ++ + S
Sbjct: 318 TFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGFS 377
Query: 463 LNARSRALLMQKLDR-SGSATTIAGSA 488
L A R LM KL + +GS + SA
Sbjct: 378 LGAGGRQQLMAKLAQGTGSGMELTASA 404
Score = 224 (83.9 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFEN 608
+ ++C LL NMFDP ET +D DI+EDV +C G H+FV+K S G VY++ +
Sbjct: 419 IATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPS 478
Query: 609 TQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A A ALHGRWF+GK+ITA ++ +Y FPD++
Sbjct: 479 IVIAHQAVSALHGRWFSGKVITANYVPVNSYHDLFPDAV 517
Score = 70 (29.7 bits), Expect = 1.8e-51, Sum P(3) = 1.8e-51
Identities = 23/75 (30%), Positives = 33/75 (44%)
Query: 9 LEKMVENP-EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEK-VEDYDDDGHRSRGSKSR 66
++ M+E E AK + + + +R RSRS KS + D RG + R
Sbjct: 8 IDAMLEGGLEMAKNDRSQSRQRSPARSNRSRSRSKDRKSSSRRSRSRSRDRRGDRGDRRR 67
Query: 67 DESRNHDRRKERDSS 81
SR+ DRR R S
Sbjct: 68 SRSRSKDRRTTRRRS 82
Score = 57 (25.1 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
+K++++++ +S DR R + +S + +D RS S+ R SR+ DR R
Sbjct: 41 SKDRKSSSRRSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSP-SRERRRSRSRDRGAPR 99
Query: 79 DSS 81
S
Sbjct: 100 RRS 102
Score = 54 (24.1 bits), Expect = 8.3e-50, Sum P(3) = 8.3e-50
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 32 KSEDR--VRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
+S+DR R RS S+ + + D RSR ++SRD R+ RR++R
Sbjct: 71 RSKDRRTTRRRSPSRERRRSRSRDRGAPRRRSR-TRSRDRRRSPPRRRDR 119
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 438 (159.2 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 110/244 (45%), Positives = 144/244 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+
Sbjct: 164 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 223
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++V+ S+AEKN + RLYVG+LHFN+T
Sbjct: 224 AIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGSSGPMRLYVGSLHFNIT 276
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL LNG E+ GR +
Sbjct: 277 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPM 335
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKL-DRSG-SATTIAGSA 488
+V VT++ D G + T L L +A R LM KL + SG T A +A
Sbjct: 336 RVGHVTERL---DGGTDITFPDGEQE---LDLGSAGGRLQLMAKLAEGSGIQLPTTAAAA 389
Query: 489 VTPA 492
A
Sbjct: 390 AAAA 393
Score = 73 (30.8 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 25/65 (38%), Positives = 32/65 (49%)
Query: 24 TANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSR--DESRNH-----DRR 75
+A GD + K RSRS SK + ++ D D HR R S+SR D R H DRR
Sbjct: 54 SAGGDSSKKK----RSRSHSKSRDRKRSRSRDRDRHRRRSSRSRSRDRQRRHRSRSWDRR 109
Query: 76 KERDS 80
+S
Sbjct: 110 HSSES 114
Score = 68 (29.0 bits), Expect = 4.0e-50, Sum P(3) = 4.0e-50
Identities = 27/89 (30%), Positives = 39/89 (43%)
Query: 1 MDFDEYEY-LEKMVENP----EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDD 55
M D+++ +E M+E P E ++++ DG + S SS S
Sbjct: 1 MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDGPANTSTSTMSTSSGGTSGSSAGGDSS 60
Query: 56 DGHRSRG-SKSRDE--SRNHDRRKERDSS 81
RSR SKSRD SR+ DR + R S
Sbjct: 61 KKKRSRSHSKSRDRKRSRSRDRDRHRRRS 89
Score = 64 (27.6 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 32 KSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR--DESRNHDRRKE 77
+ DR R RSS+ +S ++ HRSR R ESR+ DRR+E
Sbjct: 80 RDRDRHRRRSSRSRSRDRQRR-----HRSRSWDRRHSSESRSRDRRRE 122
Score = 44 (20.5 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ GTVP G L P A + + + S+C L ++F P+
Sbjct: 401 LNGTVPL--GGLN-----PAALTALSPALNLASQCFQLSSLFTPQ 438
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 463 (168.0 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 107/237 (45%), Positives = 140/237 (59%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 209
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 210 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 262
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL LNG E+ GR +
Sbjct: 263 EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG-FELAGRPM 321
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSA 488
KV VT+++ A++ + L R LM +L G+ I +A
Sbjct: 322 KVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARL-AEGTGLQIPPAA 375
Score = 79 (32.9 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 433 (157.5 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 107/242 (44%), Positives = 142/242 (58%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+
Sbjct: 163 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 222
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++V+ S+AEKN + RLYVG+LHFN+T
Sbjct: 223 AIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGNGGPMRLYVGSLHFNIT 275
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL LNG E+ GR +
Sbjct: 276 EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPM 334
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKLDRSGSATTIAGSAVT 490
+V VT++ D G + T L L +A R LM KL G+ + +A
Sbjct: 335 RVGHVTERL---DGGTDITFPDGDQE---LDLGSAGGRFQLMAKL-AEGAGIQLPSTAAA 387
Query: 491 PA 492
A
Sbjct: 388 AA 389
Score = 70 (29.7 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 1 MDFDEYEY-LEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHR 59
M D+++ +E M+E P +E E + VK + + SS S + G
Sbjct: 1 MASDDFDIVIEAMLEAPYKKEEDEQQRKE--VKKDYPSNTTSSTSNSGNETSGSSTIGET 58
Query: 60 SRGSKSRDESRNHDRRKER 78
S+ +SR +++ DR++ R
Sbjct: 59 SKKKRSRSHNKSRDRKRSR 77
Score = 60 (26.2 bits), Expect = 1.1e-48, Sum P(3) = 1.1e-48
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKS--------EDRVRSRS-SKCKSDEKVEDYD 54
+E E K V+ P+ + + GN S + RSRS +K + ++ D
Sbjct: 21 EEDEQQRKEVKKDYPSNTTSSTSNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSRSRD 80
Query: 55 DDGHRSRGSKSRD-------ESRNHDRRKERDS 80
D +R R S+SR SR+ DRR +S
Sbjct: 81 RDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSES 113
Score = 54 (24.1 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 32 KSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR--DESRNHDRRKE 77
+ DR R R+S+ +S + HRSR R ESR+ D R+E
Sbjct: 79 RDRDRYRRRNSRSRSPGR-----QCRHRSRSWDRRHGSESRSRDHRRE 121
Score = 43 (20.2 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ G VP LG AL P A + + + S+C L ++F P+
Sbjct: 400 LNGAVP-----LG-ALN-PAALTALSPALNLASQCFQLSSLFTPQ 437
>UNIPROTKB|H0Y4X3 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
HGNC:HGNC:15923 ChiTaRS:RBM39 ProteinModelPortal:H0Y4X3
PRIDE:H0Y4X3 Ensembl:ENST00000448303 Bgee:H0Y4X3 Uniprot:H0Y4X3
Length = 337
Score = 346 (126.9 bits), Expect = 3.4e-49, Sum P(3) = 3.4e-49
Identities = 72/132 (54%), Positives = 87/132 (65%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 23 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 82
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ +LG P++V+ S+AEKN RLYVG+LHFN+T
Sbjct: 83 AIGLTGQRVLGVPIIVQASQAEKN-------RAAAMANNLQKGSAGPMRLYVGSLHFNIT 135
Query: 374 EDQLRQVFEPFG 385
ED LR +FEPFG
Sbjct: 136 EDMLRGIFEPFG 147
Score = 131 (51.2 bits), Expect = 3.4e-49, Sum P(3) = 3.4e-49
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQ 610
++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+SA G VY++ +
Sbjct: 274 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 333
Query: 611 SAFA 614
+A A
Sbjct: 334 AAIA 337
Score = 64 (27.6 bits), Expect = 3.4e-49, Sum P(3) = 3.4e-49
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 405 FVQFARLEDARNALN-LNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL 463
F +F+ E A+ AL LNG E+ GR +KV VT+++ A++ + L
Sbjct: 146 FGRFSDSECAKKALEQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDL 202
Query: 464 NARSRALLMQKLDRSGSATTIAGSA 488
R LM +L G+ I +A
Sbjct: 203 GTTGRLQLMARL-AEGTGLQIPPAA 226
Score = 60 (26.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGH-CKGFGFVQFARLEDARNALN 419
R ++ L + L + F G V V++ D KG +V+F + A+
Sbjct: 26 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 85
Query: 420 LNGQLEIVGRAIKVSA 435
L GQ ++G I V A
Sbjct: 86 LTGQ-RVLGVPIIVQA 100
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 337 (123.7 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 80/194 (41%), Positives = 109/194 (56%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSR-AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
RD TV + LKADERD+YEFFS AGKVRD++ I D+ S +SKGV YVEFY +V
Sbjct: 484 RDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVI 543
Query: 313 MAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH--- 369
A+A +G L +P+ ++ S+AEKN +LY+G L
Sbjct: 544 KALAANGMMLKNRPIKIQSSQAEKN------RAAKAAKHQPIDPNDIPLKLYIGGLLGPL 597
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428
N+TE +L+Q+F PFG + V++ D TG KGFGF+QF + +A AL + +E+ G
Sbjct: 598 SNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAG 657
Query: 429 RAIKVSAVTDQSGL 442
R IKV D L
Sbjct: 658 REIKVGYAQDSKYL 671
Score = 152 (58.6 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 37/122 (30%), Positives = 67/122 (54%)
Query: 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIG--VPSECLLLKNMFDPKNETY---EEFDM 573
++ +P+ A+ + VP + I V + L+L NMF +E +F
Sbjct: 732 IIDPNIPSRYATGANAIMARNSFVPSTNNINNNVTTN-LVLSNMFSSNDENIGSDPDFFN 790
Query: 574 DIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 632
DI EDV+ ECSK+GK+ +I+++ K+ G +Y+++ N + + + L+GR+F G +I A
Sbjct: 791 DILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAY 850
Query: 633 FM 634
F+
Sbjct: 851 FI 852
Score = 74 (31.1 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 11 KMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDE-------KVEDYDDDGHRSRGS 63
K+ + + ++ N D E+R +SR K K+D +V DY S +
Sbjct: 243 KVKKRYHTSSDENDRNNDNTSSEEERTKSRKKKHKNDNSDKKNENRVVDYSSSSSSSSDA 302
Query: 64 K----SRDESRNHDRRKERDSS 81
S DE R+H +RK R ++
Sbjct: 303 SNEYSSSDEERDHKKRKIRKTN 324
Score = 73 (30.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDES 69
EK+ + K ++ + DR R R + ++ D D D R R K +D
Sbjct: 353 EKVYSKYDKMKRRDRERERDRDRDRDRDRDRD---RDRDRDRDRDRDRDRER-EKDKDRD 408
Query: 70 RNHDRRKERD 79
R+HDR ++R+
Sbjct: 409 RDHDRYRDRE 418
Score = 73 (30.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKV-EDYDDDGHRSRG 62
+E ++ ++ + ++ ++ + N +++ R S S+EKV YD R R
Sbjct: 311 EERDHKKRKIRKTNRSRRISRSSSESNSSTDNDKRGTSRS--SEEKVYSKYDKMKRRDR- 367
Query: 63 SKSRDESRNHDRRKERD 79
+ RD R+ DR ++RD
Sbjct: 368 ERERDRDRDRDRDRDRD 384
Score = 71 (30.1 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 3 FDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSR 61
+ +Y+ +++ E ++++ + DR R R + + EK +D D D R R
Sbjct: 356 YSKYDKMKRRDRERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYR 415
Query: 62 GSKSRDESRNHDRRKERD 79
+ RD R+ +R + +D
Sbjct: 416 -DRERDRYRDRERERRKD 432
Score = 68 (29.0 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
++EK + D +K DR R R + ++ D D D R R + RD R+ +R K++
Sbjct: 351 SEEKVYSKYD-KMKRRDRERERD---RDRDRDRDRDRDRDRDR-DRDRDRDRDREREKDK 405
Query: 79 D 79
D
Sbjct: 406 D 406
Score = 68 (29.0 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSED---RVRSRSSKCKSDEKVEDYDDDGH 58
D D++E + K + + + N N KS++ +RS+SS K+ K ED D++ H
Sbjct: 153 DEDKHENIPKNKADTLKEESDVSDNHHNNRKSKNIKNSIRSKSSNSKT--KKEDDDNNIH 210
Query: 59 RSRGSKSRDESRNHDRRKERDS 80
+ S+ ++ R + +D+
Sbjct: 211 CNNSSQENEQKRKEQLLENKDN 232
Score = 65 (27.9 bits), Expect = 2.5e-47, Sum P(3) = 2.5e-47
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRV--RSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRN 71
E +++K+ N + + K+E+RV S SS SD E D R K + N
Sbjct: 266 EERTKSRKKKHKNDNSDKKNENRVVDYSSSSSSSSDASNEYSSSDEERDH-KKRKIRKTN 324
Query: 72 HDRRKERDSS 81
RR R SS
Sbjct: 325 RSRRISRSSS 334
Score = 64 (27.6 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
+E + E+++EN + KE + N VK R +S ++D ++ + R++
Sbjct: 218 NEQKRKEQLLENKDNKKEGKNTNSS-KVKK----RYHTSSDENDRNNDNTSSEEERTKSR 272
Query: 64 KSRDESRNHDRRKE 77
K + ++ N D++ E
Sbjct: 273 KKKHKNDNSDKKNE 286
Score = 60 (26.2 bits), Expect = 8.2e-47, Sum P(3) = 8.2e-47
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 2 DFDEYEYLEKMVE-NPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-- 58
D D E ++K V+ N + +K DG ED D+ +D D+D H
Sbjct: 100 DEDNDENVDKNVDKNVDKNVDKNDDEDDGEDDGEDDGEDDGEHDGEDDGEDDSDEDKHEN 159
Query: 59 --RSRGSKSRDES----RNHDRRKERD 79
+++ ++ES +H+ RK ++
Sbjct: 160 IPKNKADTLKEESDVSDNHHNNRKSKN 186
Score = 55 (24.4 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 32 KSEDRVRSRSSKCKSD-EKVEDYDDDGHRSRGS---KSRDESRNHDRRKER 78
+ DR R + D ++ D + D +R R K R+ R +R KER
Sbjct: 395 RDRDREREKDKDRDRDHDRYRDRERDRYRDRERERRKDREREREREREKER 445
Score = 51 (23.0 bits), Expect = 7.1e-46, Sum P(3) = 7.1e-46
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 10 EKMVENPEPAKEK---ETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR 66
++++EN E + T + D K+ R R SK +D K+++ + + R + +
Sbjct: 32 DELIENKELKNDNLNNNTCDSDKK-KTNKREVKRKSKVINDNKIDNENKNTKRKKKTNG- 89
Query: 67 DESRNHDRRKERDS 80
D N D + D+
Sbjct: 90 DVDINIDENFDEDN 103
Score = 49 (22.3 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSD-EKVEDYDDDGHRSRGSKSRDESRNHDRR 75
E K+++ + + DR R R + + D E+ + + + R R R+ R +R
Sbjct: 402 EKDKDRDRDHDRYRDRERDRYRDRERERRKDREREREREREKERIRRENERERLRK-ERE 460
Query: 76 KERD 79
ER+
Sbjct: 461 LERE 464
Score = 47 (21.6 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKS-RDESRNHDRRKER 78
+EK+ + + DR R R + + E+ +D + + R R + R E+ RKER
Sbjct: 401 REKDKDRDRDHDRYRDRERDRY-RDRERERRKDREREREREREKERIRRENERERLRKER 459
Query: 79 D 79
+
Sbjct: 460 E 460
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 337 (123.7 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 80/194 (41%), Positives = 109/194 (56%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSR-AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
RD TV + LKADERD+YEFFS AGKVRD++ I D+ S +SKGV YVEFY +V
Sbjct: 484 RDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVI 543
Query: 313 MAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH--- 369
A+A +G L +P+ ++ S+AEKN +LY+G L
Sbjct: 544 KALAANGMMLKNRPIKIQSSQAEKN------RAAKAAKHQPIDPNDIPLKLYIGGLLGPL 597
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428
N+TE +L+Q+F PFG + V++ D TG KGFGF+QF + +A AL + +E+ G
Sbjct: 598 SNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAG 657
Query: 429 RAIKVSAVTDQSGL 442
R IKV D L
Sbjct: 658 REIKVGYAQDSKYL 671
Score = 152 (58.6 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 37/122 (30%), Positives = 67/122 (54%)
Query: 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIG--VPSECLLLKNMFDPKNETY---EEFDM 573
++ +P+ A+ + VP + I V + L+L NMF +E +F
Sbjct: 732 IIDPNIPSRYATGANAIMARNSFVPSTNNINNNVTTN-LVLSNMFSSNDENIGSDPDFFN 790
Query: 574 DIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 632
DI EDV+ ECSK+GK+ +I+++ K+ G +Y+++ N + + + L+GR+F G +I A
Sbjct: 791 DILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNNDESLKSFQFLNGRYFGGSLINAY 850
Query: 633 FM 634
F+
Sbjct: 851 FI 852
Score = 74 (31.1 bits), Expect = 2.8e-48, Sum P(3) = 2.8e-48
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 11 KMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDE-------KVEDYDDDGHRSRGS 63
K+ + + ++ N D E+R +SR K K+D +V DY S +
Sbjct: 243 KVKKRYHTSSDENDRNNDNTSSEEERTKSRKKKHKNDNSDKKNENRVVDYSSSSSSSSDA 302
Query: 64 K----SRDESRNHDRRKERDSS 81
S DE R+H +RK R ++
Sbjct: 303 SNEYSSSDEERDHKKRKIRKTN 324
Score = 73 (30.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDES 69
EK+ + K ++ + DR R R + ++ D D D R R K +D
Sbjct: 353 EKVYSKYDKMKRRDRERERDRDRDRDRDRDRD---RDRDRDRDRDRDRDRER-EKDKDRD 408
Query: 70 RNHDRRKERD 79
R+HDR ++R+
Sbjct: 409 RDHDRYRDRE 418
Score = 73 (30.8 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKV-EDYDDDGHRSRG 62
+E ++ ++ + ++ ++ + N +++ R S S+EKV YD R R
Sbjct: 311 EERDHKKRKIRKTNRSRRISRSSSESNSSTDNDKRGTSRS--SEEKVYSKYDKMKRRDR- 367
Query: 63 SKSRDESRNHDRRKERD 79
+ RD R+ DR ++RD
Sbjct: 368 ERERDRDRDRDRDRDRD 384
Score = 71 (30.1 bits), Expect = 5.8e-48, Sum P(3) = 5.8e-48
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 3 FDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSR 61
+ +Y+ +++ E ++++ + DR R R + + EK +D D D R R
Sbjct: 356 YSKYDKMKRRDRERERDRDRDRDRDRDRDRDRDRDRDRDRDRDREREKDKDRDRDHDRYR 415
Query: 62 GSKSRDESRNHDRRKERD 79
+ RD R+ +R + +D
Sbjct: 416 -DRERDRYRDRERERRKD 432
Score = 68 (29.0 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
++EK + D +K DR R R + ++ D D D R R + RD R+ +R K++
Sbjct: 351 SEEKVYSKYD-KMKRRDRERERD---RDRDRDRDRDRDRDRDR-DRDRDRDRDREREKDK 405
Query: 79 D 79
D
Sbjct: 406 D 406
Score = 68 (29.0 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSED---RVRSRSSKCKSDEKVEDYDDDGH 58
D D++E + K + + + N N KS++ +RS+SS K+ K ED D++ H
Sbjct: 153 DEDKHENIPKNKADTLKEESDVSDNHHNNRKSKNIKNSIRSKSSNSKT--KKEDDDNNIH 210
Query: 59 RSRGSKSRDESRNHDRRKERDS 80
+ S+ ++ R + +D+
Sbjct: 211 CNNSSQENEQKRKEQLLENKDN 232
Score = 65 (27.9 bits), Expect = 2.5e-47, Sum P(3) = 2.5e-47
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRV--RSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRN 71
E +++K+ N + + K+E+RV S SS SD E D R K + N
Sbjct: 266 EERTKSRKKKHKNDNSDKKNENRVVDYSSSSSSSSDASNEYSSSDEERDH-KKRKIRKTN 324
Query: 72 HDRRKERDSS 81
RR R SS
Sbjct: 325 RSRRISRSSS 334
Score = 64 (27.6 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
+E + E+++EN + KE + N VK R +S ++D ++ + R++
Sbjct: 218 NEQKRKEQLLENKDNKKEGKNTNSS-KVKK----RYHTSSDENDRNNDNTSSEEERTKSR 272
Query: 64 KSRDESRNHDRRKE 77
K + ++ N D++ E
Sbjct: 273 KKKHKNDNSDKKNE 286
Score = 60 (26.2 bits), Expect = 8.2e-47, Sum P(3) = 8.2e-47
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 2 DFDEYEYLEKMVE-NPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-- 58
D D E ++K V+ N + +K DG ED D+ +D D+D H
Sbjct: 100 DEDNDENVDKNVDKNVDKNVDKNDDEDDGEDDGEDDGEDDGEHDGEDDGEDDSDEDKHEN 159
Query: 59 --RSRGSKSRDES----RNHDRRKERD 79
+++ ++ES +H+ RK ++
Sbjct: 160 IPKNKADTLKEESDVSDNHHNNRKSKN 186
Score = 55 (24.4 bits), Expect = 2.7e-46, Sum P(3) = 2.7e-46
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 32 KSEDRVRSRSSKCKSD-EKVEDYDDDGHRSRGS---KSRDESRNHDRRKER 78
+ DR R + D ++ D + D +R R K R+ R +R KER
Sbjct: 395 RDRDREREKDKDRDRDHDRYRDRERDRYRDRERERRKDREREREREREKER 445
Score = 51 (23.0 bits), Expect = 7.1e-46, Sum P(3) = 7.1e-46
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 10 EKMVENPEPAKEK---ETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR 66
++++EN E + T + D K+ R R SK +D K+++ + + R + +
Sbjct: 32 DELIENKELKNDNLNNNTCDSDKK-KTNKREVKRKSKVINDNKIDNENKNTKRKKKTNG- 89
Query: 67 DESRNHDRRKERDS 80
D N D + D+
Sbjct: 90 DVDINIDENFDEDN 103
Score = 49 (22.3 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSD-EKVEDYDDDGHRSRGSKSRDESRNHDRR 75
E K+++ + + DR R R + + D E+ + + + R R R+ R +R
Sbjct: 402 EKDKDRDRDHDRYRDRERDRYRDRERERRKDREREREREREKERIRRENERERLRK-ERE 460
Query: 76 KERD 79
ER+
Sbjct: 461 LERE 464
Score = 47 (21.6 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKS-RDESRNHDRRKER 78
+EK+ + + DR R R + + E+ +D + + R R + R E+ RKER
Sbjct: 401 REKDKDRDRDHDRYRDRERDRY-RDRERERRKDREREREREREKERIRRENERERLRKER 459
Query: 79 D 79
+
Sbjct: 460 E 460
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 286 (105.7 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 66/186 (35%), Positives = 108/186 (58%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
DQRTVF ++ E+D+ + FS+AG V +VRLI D+ ++R KGVGYVEF V A
Sbjct: 264 DQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMVDKA 323
Query: 315 IALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTE 374
IALSG L GQ ++V + EK +++ R+YVG +H ++ E
Sbjct: 324 IALSGSVLDGQQILVHSIQPEKKVIKSNSTGSSGGES----------RIYVGYIHLSVAE 373
Query: 375 DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+Q+R +F+P+G ++ + + + G K + F+QF E A+ A+ LNG E++G+ +K+
Sbjct: 374 EQIRVIFQPYGDIDFINIHT-KPGISK-YAFIQFKTQESAKRAITELNGY-ELMGKNLKL 430
Query: 434 SAVTDQ 439
+ V+ +
Sbjct: 431 NMVSQE 436
Score = 260 (96.6 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 47/118 (39%), Positives = 72/118 (61%)
Query: 527 HPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF 586
+P T + P +P F + S CL+L+NMFDP+ ET E +D DI + ECS F
Sbjct: 612 NPSLASTGIITPYTQLPHFAFV---STCLILRNMFDPETETEENWDQDILSETHAECSTF 668
Query: 587 GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 644
GK+ HI+++K++ G +Y+R++N +S A + LHGRWF+ K I A + Y+ +FP
Sbjct: 669 GKIMHIYLDKNTKGCIYIRYDNNESPLKAIQKLHGRWFSKKQIIAELVPEPVYKLQFP 726
Score = 60 (26.2 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 15 NPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNH-D 73
N + E + + ++S D R RSS + DY D R S+ +SR++ D
Sbjct: 28 NEKKRSEPDDSQDLDLLRSNDEKRRRSSSERDYRDSRDYRDS-RDYRDSRDYRDSRDYRD 86
Query: 74 RRKERD 79
R ++RD
Sbjct: 87 RDRDRD 92
Score = 47 (21.6 bits), Expect = 2.6e-46, Sum P(3) = 2.6e-46
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEK-VEDYDD-DGHRSR 61
D+ + L+ + N E K + +++ S D SR + D + DY D D R
Sbjct: 36 DDSQDLDLLRSNDE--KRRRSSSERDYRDSRDYRDSRDYRDSRDYRDSRDYRDRDRDRDY 93
Query: 62 GSKSRDESRNHDR--RKERD 79
G R+ DR R +RD
Sbjct: 94 GGGGSGRDRDRDRYDRYDRD 113
Score = 46 (21.3 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
Identities = 21/59 (35%), Positives = 26/59 (44%)
Query: 29 GNVKSEDRVRSR----SSKCKSDEKVEDYDDDGHR-SRGSK-SRDESRNHDRRKERDSS 81
G +S DR S + S D D R SR S+ SRD S + DRR +SS
Sbjct: 123 GGGRSSDRYDREYGGGSGRRDSGRDYRDNRDSSSRDSRDSRDSRDRS-DRDRRYSSESS 180
Score = 37 (18.1 bits), Expect = 2.9e-45, Sum P(3) = 2.9e-45
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 60 SRGSKSRDESRNHDRRKERDSS 81
+R +RD N +R E D S
Sbjct: 17 NREMSNRDREINEKKRSEPDDS 38
Score = 37 (18.1 bits), Expect = 2.9e-45, Sum P(3) = 2.9e-45
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 39 SRSSKCKSDEKVEDYDDDGHRSRGSKSRD 67
SR S+ D + D + S S SRD
Sbjct: 156 SRDSRDSRDSRDRSDRDRRYSSESSSSRD 184
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 426 (155.0 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 109/246 (44%), Positives = 143/246 (58%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+
Sbjct: 178 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 237
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++V+ S+AEKN + RLYVG+LH N+T
Sbjct: 238 AIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSGGPV-------RLYVGSLHCNIT 290
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
ED LR + EPFG ++ + L D ETG KG+GF+ F+ E AR AL LNG E+ GR +
Sbjct: 291 EDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNG-FELAGRPM 349
Query: 432 KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRAL-LMQKL-DRSG---SATTIAG 486
++ VT++ D G + T L L + L LM KL + SG TT A
Sbjct: 350 RIGHVTERP---DGGTDITFPDGDQE---LDLGSAGGHLQLMAKLAEGSGIQLPTTTAAA 403
Query: 487 SAVTPA 492
+AV A
Sbjct: 404 AAVAQA 409
Score = 77 (32.2 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 25 ANGDGNV-KSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSR--DESRNH-----DRR 75
ANG+G ++ + RSRS SK + ++ D D HR + S+SR D R H DRR
Sbjct: 64 ANGNGTSGEASKKKRSRSHSKSRERKRSRSRDRDRHRRKNSRSRSRDRQRRHRSRSWDRR 123
Query: 76 KERDS 80
+S
Sbjct: 124 HSSES 128
Score = 52 (23.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 17 EPAKEKET-ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDG-HRSRGSKSR--DESRNH 72
E +K+K + ++ + R R R + + + D HRSR R ESR+
Sbjct: 72 EASKKKRSRSHSKSRERKRSRSRDRDRHRRKNSRSRSRDRQRRHRSRSWDRRHSSESRSR 131
Query: 73 DRRKE 77
D R+E
Sbjct: 132 DWRRE 136
Score = 50 (22.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 21/92 (22%), Positives = 42/92 (45%)
Query: 1 MDFDEYEY-LEKMVENP----EPAKEKETANGDGNVKSEDRVRSRSSK-CKSD-EKVEDY 53
M D+++ +E M+E P E ++++ A D + + S ++ C +D V D
Sbjct: 1 MASDDFDIVIEAMLEAPYKKEEDGQQRKEAKKDSPSNTTNSTSSIDTRSCGTDGSSVTDG 60
Query: 54 DD-------DGHRSRGSKSRDESRNHDRRKER 78
G S+ +SR S++ +R++ R
Sbjct: 61 TSAANGNGTSGEASKKKRSRSHSKSRERKRSR 92
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 390 (142.3 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 106/245 (43%), Positives = 137/245 (55%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+
Sbjct: 148 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 207
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++V+ S+AEKN + RLYVG+LHFN+T
Sbjct: 208 AIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGSSGPMRLYVGSLHFNIT 260
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFG--FVQFARLEDARNALN-LNGQLEIVGRA 430
ED LR +FEPFG V +E+G K +F+ E AR AL LNG E+ GR
Sbjct: 261 EDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQLNG-FELAGRP 319
Query: 431 IKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKL-DRSG-SATTIAGS 487
++V VT++ D G + T L L +A R LM KL + SG T A +
Sbjct: 320 MRVGHVTERL---DGGTDITFPDGEQE---LDLGSAGGRLQLMAKLAEGSGIQLPTTAAA 373
Query: 488 AVTPA 492
A A
Sbjct: 374 AAAAA 378
Score = 72 (30.4 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 24 TANGDGNVKSEDRVRSR--SSKCKSDEKVEDYDDDGHRSRGSKSR--DESRNHDRRKE 77
+A GD + +S DR R R SS+ +S ++ HRSR R ESR+ DRR+E
Sbjct: 54 SAGGDSSNRSRDRDRHRRRSSRSRSRDRQRR-----HRSRSWDRRHSSESRSRDRRRE 106
Score = 67 (28.6 bits), Expect = 5.1e-45, Sum P(3) = 5.1e-45
Identities = 29/98 (29%), Positives = 41/98 (41%)
Query: 1 MDFDEYEY-LEKMVENP----EPAKEKETANGDGNVKSEDRVRSRSSKCKS------DEK 49
M D+++ +E M+E P E ++++ DG + S SS S D
Sbjct: 1 MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDGPANTSTSTMSTSSGGTSGSSAGGDSS 60
Query: 50 VEDYDDDGHRSRGSKSR--DESRNH-----DRRKERDS 80
D D HR R S+SR D R H DRR +S
Sbjct: 61 NRSRDRDRHRRRSSRSRSRDRQRRHRSRSWDRRHSSES 98
Score = 44 (20.5 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ GTVP G L P A + + + S+C L ++F P+
Sbjct: 386 LNGTVPL--GGLN-----PAALTALSPALNLASQCFQLSSLFTPQ 423
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 390 (142.3 bits), Expect = 8.3e-45, Sum P(3) = 8.3e-45
Identities = 106/245 (43%), Positives = 137/245 (55%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+
Sbjct: 176 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL 235
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
AI L+GQ LLG P++V+ S+AEKN + RLYVG+LHFN+T
Sbjct: 236 AIGLTGQRLLGVPIIVQASQAEKNRL-------AAMANNLQKGSSGPMRLYVGSLHFNIT 288
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFG--FVQFARLEDARNALN-LNGQLEIVGRA 430
ED LR +FEPFG V +E+G K +F+ E AR AL LNG E+ GR
Sbjct: 289 EDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQLNG-FELAGRP 347
Query: 431 IKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKL-DRSG-SATTIAGS 487
++V VT++ D G + T L L +A R LM KL + SG T A +
Sbjct: 348 MRVGHVTERL---DGGTDITFPDGEQE---LDLGSAGGRLQLMAKLAEGSGIQLPTTAAA 401
Query: 488 AVTPA 492
A A
Sbjct: 402 AAAAA 406
Score = 67 (28.6 bits), Expect = 8.3e-45, Sum P(3) = 8.3e-45
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 38 RSRS-SKCKSDEKVEDYDDDGHRSRGSKSR--DESRNH-----DRRKERDS 80
RSRS SK + ++ D D HR R S+SR D R H DRR +S
Sbjct: 76 RSRSHSKSRDRKRSRSRDRDRHRRRSSRSRSRDRQRRHRSRSWDRRHSSES 126
Score = 64 (27.6 bits), Expect = 1.7e-44, Sum P(3) = 1.7e-44
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 32 KSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR--DESRNHDRRKE 77
+ DR R RSS+ +S ++ HRSR R ESR+ DRR+E
Sbjct: 92 RDRDRHRRRSSRSRSRDRQRR-----HRSRSWDRRHSSESRSRDRRRE 134
Score = 61 (26.5 bits), Expect = 3.5e-44, Sum P(3) = 3.5e-44
Identities = 25/97 (25%), Positives = 42/97 (43%)
Query: 1 MDFDEYEY-LEKMVENP----EPAKEKETANGDGNVKSEDRVRSRSSKCKS-------DE 48
M D+++ +E M+E P E ++++ DG + S SS S
Sbjct: 1 MASDDFDIVIEAMLEAPYKKEEDEQQRKEVKKDGPANTSTSTMSTSSGGTSGSSAGGDSS 60
Query: 49 KVEDYDDDG--HRSRGSKSRDESRNHDRRKERDSSCH 83
K+ + D HR + S+S +SR+ R + RD H
Sbjct: 61 KLFGLNQDFPLHRKKRSRSHSKSRDRKRSRSRDRDRH 97
Score = 45 (20.9 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 59 RSRG-SKSRDE--SRNHDRRKERDSS 81
RSR SKSRD SR+ DR + R S
Sbjct: 76 RSRSHSKSRDRKRSRSRDRDRHRRRS 101
Score = 42 (19.8 bits), Expect = 8.3e-45, Sum P(3) = 8.3e-45
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ GTVP G L A + + + S+C L ++F P+
Sbjct: 414 LNGTVPL--GGLNPAALTALSPALNLASQAIASQCFQLSSLFTPQ 456
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 404 (147.3 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 101/233 (43%), Positives = 136/233 (58%)
Query: 263 QICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPL 322
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+AI L+GQ L
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 61
Query: 323 LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFE 382
LG P++V+ S+AEKN + RLYVG+LHFN+TED LR +FE
Sbjct: 62 LGVPIIVQASQAEKNRL-------AAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFE 114
Query: 383 PFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVSAVTDQS 440
PFG ++ + L D +TG KG+GF+ F+ E AR AL LNG E+ GR ++V VT++
Sbjct: 115 PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG-FELAGRPMRVGHVTERL 173
Query: 441 GLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKLDRSGSATTIAGSAVTPA 492
D G + T L L +A R LM KL G+ + +A A
Sbjct: 174 ---DGGTDITFPDGDQE---LDLGSAGGRFQLMAKL-AEGAGIQLPSTAAAAA 219
Score = 43 (20.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ G VP LG AL P A + + + S+C L ++F P+
Sbjct: 230 LNGAVP-----LG-ALN-PAALTALSPALNLASQCFQLSSLFTPQ 267
>UNIPROTKB|Q5QP23 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 HOVERGEN:HBG057646
TIGRFAMs:TIGR01622 UniGene:Hs.282901 HGNC:HGNC:15923
HOGENOM:HOG000236253 ChiTaRS:RBM39 IPI:IPI00647282 SMR:Q5QP23
STRING:Q5QP23 Ensembl:ENST00000374038 Uniprot:Q5QP23
Length = 231
Score = 265 (98.3 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 52/83 (62%), Positives = 64/83 (77%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 149 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 208
Query: 314 AIALSGQPLLGQPVMVKPSEAEK 336
AI L+GQ +LG P++V+ S+AEK
Sbjct: 209 AIGLTGQRVLGVPIIVQASQAEK 231
Score = 79 (32.9 bits), Expect = 8.2e-29, Sum P(2) = 8.2e-29
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|G3V546 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V546 SMR:G3V546 Ensembl:ENST00000557403
ArrayExpress:G3V546 Bgee:G3V546 Uniprot:G3V546
Length = 115
Score = 298 (110.0 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 62/121 (51%), Positives = 80/121 (66%)
Query: 263 QICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPL 322
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP+AI L+GQ L
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 61
Query: 323 LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFE 382
LG P++V+ S+AEKN + RLYVG+LHFN+TED LR +FE
Sbjct: 62 LGVPIIVQASQAEKNRL-------AAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFE 114
Query: 383 P 383
P
Sbjct: 115 P 115
>UNIPROTKB|Q5QP21 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL357374
IPI:IPI00514831 UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
SMR:Q5QP21 STRING:Q5QP21 Ensembl:ENST00000427743 Uniprot:Q5QP21
Length = 202
Score = 241 (89.9 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 47/75 (62%), Positives = 57/75 (76%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG+ YVEF DV SVP+
Sbjct: 128 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPL 187
Query: 314 AIALSGQPLLGQPVM 328
AI L+GQ +LG P++
Sbjct: 188 AIGLTGQRVLGVPII 202
Score = 79 (32.9 bits), Expect = 4.9e-26, Sum P(2) = 4.9e-26
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 62 (26.9 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 DES-----RNHDRRKERDSS 81
D R+ RR+ R S
Sbjct: 88 DRRFRGRYRSPYRRRSRSKS 107
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 155 (59.6 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-N 419
R+Y+G++++N+TEDQ+R +F FG V L + +TG KGFGFV F + A +A+
Sbjct: 770 RIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIAT 829
Query: 420 LNGQLEIVGRAIKVSAVTDQS 440
+NG E++GR+IKV T S
Sbjct: 830 MNG-FELLGRSIKVGRPTKSS 849
Score = 154 (59.3 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421
R+YVG+LHF++TED +R F FG ++ + L D +G KG+ F+++ E A AL
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKALQSM 648
Query: 422 GQLEIVGRAIKVS 434
+ GRAIKV+
Sbjct: 649 TNYVMCGRAIKVA 661
Score = 132 (51.5 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF-VYLRFENT 609
PS CL+LKN P ++ D ++D+ C++FG+++ + ++ DS VY+ F++
Sbjct: 945 PSRCLVLKNAGSP-----DDIDSSFEDDIRSGCNEFGEIEKLVIKSDSQSVKVYILFKDL 999
Query: 610 QSAFAAQRALHGRWFAGKMITATF 633
S A Q L+G++F+ I A F
Sbjct: 1000 YSGMACQSKLNGKYFSYHCIKAEF 1023
Score = 84 (34.6 bits), Expect = 7.2e-11, Sum P(3) = 7.2e-11
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 328
E V FS+ G+V L+ + ++ + KG G+V+F S AIA ++G LLG+ +
Sbjct: 782 EDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATMNGFELLGRSIK 841
Query: 329 V-KPSEAEKN 337
V +P+++ N
Sbjct: 842 VGRPTKSSNN 851
Score = 63 (27.2 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
K+ N + N S + +S +SK K K +SR S+SR +SR+ R ++R
Sbjct: 287 KKSHYNNNNNNSSSSNNNKSLTSKDKRRSKSRSRSKSKSKSR-SRSRTKSRSRSRDRKR 344
Score = 63 (27.2 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 21/72 (29%), Positives = 28/72 (38%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDG-HRSRGSK--SRDE-S 69
+N P T S+ + S SS S + DG H + SK S+D+ S
Sbjct: 143 KNTTPTTTVLTQTTKSTKSSKKSISSSSSSSSSHSRSRSRSSDGKHSKKSSKRPSKDKKS 202
Query: 70 RNHDRRKERDSS 81
H R K R S
Sbjct: 203 ERHSRSKSRSRS 214
Score = 62 (26.9 bits), Expect = 5.0e-20, Sum P(4) = 5.0e-20
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVE---DYDDDGHRSRGSKSRDESRNHDRR 75
+ +K ++ + S R RSRSS K +K D R SKSR SR+
Sbjct: 161 SSKKSISSSSSSSSSHSRSRSRSSDGKHSKKSSKRPSKDKKSERHSRSKSRSRSRSASSS 220
Query: 76 KERDSS 81
+ SS
Sbjct: 221 ESSSSS 226
Score = 61 (26.5 bits), Expect = 6.3e-20, Sum P(4) = 6.3e-20
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 27 GDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDS 80
G + +S + R+RSS+ KS + G + + S+SR S R + S
Sbjct: 361 GSDSRRSSKKFRNRSSRSKSKSRSRSRSS-GRKHKSSRSRSRSTTKSNRDTKSS 413
Score = 61 (26.5 bits), Expect = 6.3e-20, Sum P(4) = 6.3e-20
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSS-KCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
+K + + G R RSRS+ K D K D RSR + R DR +
Sbjct: 380 SKSRSRSRSSGRKHKSSRSRSRSTTKSNRDTKSSRMDISRSRSRSKSAGAGGRRRDRSPK 439
Query: 78 R 78
R
Sbjct: 440 R 440
Score = 59 (25.8 bits), Expect = 1.0e-19, Sum P(4) = 1.0e-19
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 36 RVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
R RSRS D K Y+++ + S S + + D+R+ + S
Sbjct: 274 RSRSRSRSKSRDRKKSHYNNNNNNSSSSNNNKSLTSKDKRRSKSRS 319
Score = 58 (25.5 bits), Expect = 3.9e-20, Sum P(4) = 3.9e-20
Identities = 17/77 (22%), Positives = 37/77 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+DQ ++ + E + FS G ++ + L D S +SKG ++E+ + S
Sbjct: 585 QDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAK 643
Query: 314 AI-ALSGQPLLGQPVMV 329
A+ +++ + G+ + V
Sbjct: 644 ALQSMTNYVMCGRAIKV 660
Score = 56 (24.8 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 32 KSEDRVRSR-------SSKCKSDEKVEDYDDDGHRSRG-SKSRDESRNHDRRKERDSS 81
KS DR +S SS +++ + D +SR SKS+ +SR+ R K R S
Sbjct: 282 KSRDRKKSHYNNNNNNSSSSNNNKSLTSKDKRRSKSRSRSKSKSKSRSRSRTKSRSRS 339
Score = 56 (24.8 bits), Expect = 2.0e-19, Sum P(4) = 2.0e-19
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 19 AKEKETANGDGNVKSEDRVRS-RSSKCKSDEKVEDYDDDGHRS------RGSKSRDESRN 71
+K + + +S DR RS R + +S D D RS R S+S+ +SR+
Sbjct: 325 SKSRSRSRTKSRSRSRDRKRSDRYYRRRSSYNSSDVGSDSRRSSKKFRNRSSRSKSKSRS 384
Query: 72 HDR---RKERDS 80
R RK + S
Sbjct: 385 RSRSSGRKHKSS 396
Score = 55 (24.4 bits), Expect = 2.5e-19, Sum P(4) = 2.5e-19
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 19 AKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSR--------GSKSRDES 69
+K+K + KS+ + RSRS +K +S + D +R R GS SR S
Sbjct: 309 SKDKRRSKSRSRSKSKSKSRSRSRTKSRSRSRDRKRSDRYYRRRSSYNSSDVGSDSRRSS 368
Query: 70 RNHDRRKERDSS 81
+ R R S
Sbjct: 369 KKFRNRSSRSKS 380
Score = 54 (24.1 bits), Expect = 3.2e-19, Sum P(4) = 3.2e-19
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK 76
P+K+K++ + + +S+ R RSRS+ S E S S+SR S+N +K
Sbjct: 196 PSKDKKS---ERHSRSKSRSRSRSAS--SSESSSSSSSSS--SDSSRSRSRSKNSKHKK 247
Score = 52 (23.4 bits), Expect = 5.1e-19, Sum P(4) = 5.1e-19
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 21 EKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERD 79
+K + + KSE RS+S S+ +S E S S SR SR+ + + ++
Sbjct: 190 KKSSKRPSKDKKSERHSRSKSRSRSRSASSSESSSSSSSSSSDS-SRSRSRSKNSKHKKS 248
Query: 80 SS 81
SS
Sbjct: 249 SS 250
Score = 48 (22.0 bits), Expect = 1.3e-18, Sum P(4) = 1.3e-18
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 58 HRSRGSKSRDESRNHDRRK 76
H++ S+SR S++ DR+K
Sbjct: 270 HKNSRSRSRSRSKSRDRKK 288
Score = 47 (21.6 bits), Expect = 1.6e-18, Sum P(4) = 1.6e-18
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 11 KMVENPEPAKEKETANGDGNVK-----SEDRVRSRSSKCKS 46
K + + +K + +N +G + S DR RS SSK KS
Sbjct: 439 KRTKTTDRSKSRSRSNSNGRSRKKRGRSRDRSRSLSSKRKS 479
Score = 45 (20.9 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
++ + + G G + DR R+ K K + RSR + R R+ +R
Sbjct: 420 SRSRSKSAGAGG-RRRDRSPKRT-KTTDRSKSRSRSNSNGRSRKKRGRSRDRSRSLSSKR 477
Query: 79 DSS 81
SS
Sbjct: 478 KSS 480
Score = 44 (20.5 bits), Expect = 3.0e-09, Sum P(3) = 3.0e-09
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 574 DIKED-VEGECSKFGKLKHIFVEKDS-----AGFVYLRFENTQSAFAAQRALHGRWFAGK 627
++ ED V S+FG++ F+ +++ GF ++ FE +SA A ++G G+
Sbjct: 779 NVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATMNGFELLGR 838
Query: 628 MI 629
I
Sbjct: 839 SI 840
Score = 43 (20.2 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 544 IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVE 580
IF G C L++N K++ + D ++K+ +
Sbjct: 788 IFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSAD 824
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 202 (76.2 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 56/134 (41%), Positives = 76/134 (56%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
RLYVG+LHFN+TED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 420 LNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKLDRS 478
LNG E+ GR ++V VT++ D G + T L L +A R LM KL
Sbjct: 74 LNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQE---LDLGSAGGRFQLMAKL-AE 125
Query: 479 GSATTIAGSAVTPA 492
G+ + +A A
Sbjct: 126 GAGIQLPSTAAAAA 139
Score = 43 (20.2 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ G VP LG AL P A + + + S+C L ++F P+
Sbjct: 150 LNGAVP-----LG-ALN-PAALTALSPALNLASQCFQLSSLFTPQ 187
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 202 (76.2 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 56/134 (41%), Positives = 76/134 (56%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
RLYVG+LHFN+TED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR AL
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 420 LNGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLSL-NARSRALLMQKLDRS 478
LNG E+ GR ++V VT++ D G + T L L +A R LM KL
Sbjct: 99 LNG-FELAGRPMRVGHVTERL---DGGTDITFPDGDQE---LDLGSAGGRFQLMAKL-AE 150
Query: 479 GSATTIAGSAVTPA 492
G+ + +A A
Sbjct: 151 GAGIQLPSTAAAAA 164
Score = 43 (20.2 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 520 VQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK 564
+ G VP LG AL P A + + + S+C L ++F P+
Sbjct: 175 LNGAVP-----LG-ALN-PAALTALSPALNLASQCFQLSSLFTPQ 212
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 214 (80.4 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 56/186 (30%), Positives = 91/186 (48%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL 317
TVF ++ D++ + + F G + R+IMD S RSKG GYV+F + A+A
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 318 SG-QPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G + + G+ V + S Q ++VGNL FN TED
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT--VFVGNLSFNATEDD 381
Query: 377 LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435
L F G ++ ++LP D ++G KGFG+V F+ ++ A+ + +NG I GR ++
Sbjct: 382 LSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHF-IAGRPCRLDF 440
Query: 436 VTDQSG 441
T ++G
Sbjct: 441 STPRTG 446
Score = 64 (27.6 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 19/77 (24%), Positives = 31/77 (40%)
Query: 5 EYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSK 64
E E E+ V E KE + + + SE S SS+ + +E+V + ++
Sbjct: 145 ESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSES 204
Query: 65 SRDESRNHDRRKERDSS 81
S D + D E S
Sbjct: 205 SSDSESSSDSSSESGDS 221
Score = 63 (27.2 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 15/67 (22%), Positives = 25/67 (37%)
Query: 11 KMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESR 70
K +PEP+K+ K E S S S+ + + + S S ES
Sbjct: 59 KRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESS 118
Query: 71 NHDRRKE 77
+ + +E
Sbjct: 119 SSESEEE 125
Score = 63 (27.2 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 5 EYEYLEKMVENPEPAKEKET-ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
E E E++VE E KE + ++ D S+ S S SD + E +D + +
Sbjct: 183 ESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAE 242
Query: 64 KSRDESRNHDRRKERDSS 81
+ +E + +DS+
Sbjct: 243 PASEERPAKITKPSQDSN 260
Score = 62 (26.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERD 79
+EK+ ++ + + SE + K +EK E D S S+S ES + + +E +
Sbjct: 131 EEKKESSSESSSSSESE-EEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEE 189
Score = 62 (26.9 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 17/72 (23%), Positives = 33/72 (45%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDES 69
+K V+ + +K+KE ++ + +S S SS +S+ + + S S+S +E
Sbjct: 68 KKSVKKQKKSKKKEESSSESESESSSS-ESESSSSESESSSSESESSSSESSSSESEEEV 126
Query: 70 RNHDRRKERDSS 81
K+ SS
Sbjct: 127 IVKTEEKKESSS 138
Score = 56 (24.8 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 19/72 (26%), Positives = 27/72 (37%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDES 69
E + E +E+E K S S+ SD E D D S S+S S
Sbjct: 176 ESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDS--SSDSESESSS 233
Query: 70 RNHDRRKERDSS 81
+ +RK +S
Sbjct: 234 EDEKKRKAEPAS 245
Score = 55 (24.4 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 15 NPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDR 74
+P+ +K KE S+ V+ + K +E + + + S S ES +
Sbjct: 50 SPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSS 108
Query: 75 RKERDSS 81
E SS
Sbjct: 109 ESESSSS 115
Score = 48 (22.0 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 14 ENPEPAKEKETANGDGNV--KSEDRVRSRSSKCKSDEKVEDYDD----DGHRSRGSKSRD 67
E+ + E ++ + V K+E++ S S S E E+ + + + S S
Sbjct: 109 ESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSS 168
Query: 68 ESRNHDRRKERDSS 81
ES + + E SS
Sbjct: 169 ESSSSESESESSSS 182
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 154 (59.3 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 162 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 212
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 213 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 272
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 273 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 325
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 326 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 380
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 381 L---GLLEPKKEKEEE 393
Score = 129 (50.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 161 MNSVMLGGRNIKV 173
Score = 117 (46.2 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 432 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 486
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWFAG+ + A
Sbjct: 487 FVEFSVASETHKAIQALNGRWFAGRKVVA 515
Score = 47 (21.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 211 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 270
Query: 626 GKMIT 630
GK +T
Sbjct: 271 GKAVT 275
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 154 (59.3 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 115 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 174
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 175 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 225
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 226 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 285
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 286 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 338
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 339 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 393
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 394 L---GLLEPKKEKEEE 406
Score = 129 (50.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 174 MNSVMLGGRNIKV 186
Score = 117 (46.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 445 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 499
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWFAG+ + A
Sbjct: 500 FVEFSIASETHKAIQALNGRWFAGRKVVA 528
Score = 47 (21.6 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 224 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 283
Query: 626 GKMIT 630
GK +T
Sbjct: 284 GKAVT 288
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 154 (59.3 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 132 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 191
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 192 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 242
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 243 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 302
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 303 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 355
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 356 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 410
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 411 L---GLLEPKKEKEEE 423
Score = 129 (50.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 191 MNSVMLGGRNIKV 203
Score = 117 (46.2 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 462 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 516
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWFAG+ + A
Sbjct: 517 FVEFSIASETHKAIQALNGRWFAGRKVVA 545
Score = 47 (21.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 241 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 300
Query: 626 GKMIT 630
GK +T
Sbjct: 301 GKAVT 305
>ZFIN|ZDB-GENE-050706-131 [details] [associations]
symbol:u2af2a "U2 small nuclear RNA auxiliary
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0046660 "female sex
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR010519 InterPro:IPR012677
Pfam:PF00076 Pfam:PF06495 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050706-131 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0046660
GeneTree:ENSGT00690000102089 TIGRFAMs:TIGR01642 EMBL:CR848818
IPI:IPI00503978 Ensembl:ENSDART00000124875 Bgee:E7F8Y4
Uniprot:E7F8Y4
Length = 470
Score = 134 (52.2 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
Identities = 37/130 (28%), Positives = 61/130 (46%)
Query: 521 QGTVPTHPGQLGTALQVP-TASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDV 579
+ T T Q LQVP + + G+P+E L L NM P+ +E +I EDV
Sbjct: 338 KNTTLTGINQTPVTLQVPGLMNSSVNQMGGIPTEVLCLMNMVAPEELLDDEEYEEIVEDV 397
Query: 580 EGECSKFGKLKHIFVEKD-------SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 632
ECSK+G++K I + + G +++ F + + A + L GR FA +++
Sbjct: 398 RDECSKYGQVKSIEIPRPVDGLDIPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTK 457
Query: 633 FMVPQTYEAK 642
+ P Y +
Sbjct: 458 YCDPDAYHRR 467
Score = 88 (36.0 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 142 RRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 201
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + G+++K+ D L + N
Sbjct: 202 TQAMAFDGII-FQGQSLKIRRPHDYQPLPGMSEN 234
Score = 86 (35.3 bits), Expect = 7.0e-15, Sum P(3) = 7.0e-15
Identities = 38/184 (20%), Positives = 71/184 (38%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 139 RQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 198
Query: 309 MSVPMAIALSGQPLLGQPVMVK--------PSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
A+A G GQ + ++ P +E V
Sbjct: 199 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGSLPVGVVSTVVPDSA-- 256
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL- 418
+L++G L + +DQ++++ FG ++ L D TG KG+ F ++ + + A+
Sbjct: 257 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNISDQAIA 316
Query: 419 NLNG 422
LNG
Sbjct: 317 GLNG 320
Score = 85 (35.0 bits), Expect = 4.4e-15, Sum P(3) = 4.4e-15
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFDE+E ++ EN + ++KE + + +S R RSR D K D D R R
Sbjct: 3 DFDEFE--RQLTENKQADRDKENKH---HRRSGSRSRSRDR----DRKRRSRDRDRER-R 52
Query: 62 GSKSRDESRNHDRRKERDSSCH 83
GS+ R + DRR R S H
Sbjct: 53 GSRDR-HGDSKDRRHRRSRSPH 73
Score = 67 (28.6 bits), Expect = 6.0e-13, Sum P(3) = 6.0e-13
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ DV AIA L+G L + +
Sbjct: 269 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNISDQAIAGLNGMQLGDKKL 328
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 329 LVQRASVGSKN 339
Score = 39 (18.8 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
+ V+ + FG LK + KDSA G+ + + + + A L+G K +
Sbjct: 271 DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNISDQAIAGLNGMQLGDKKL 328
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 175 (66.7 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 48/135 (35%), Positives = 77/135 (57%)
Query: 519 LVQGTVP----THPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETY-EEFDM 573
+VQ ++P PG L T LQVP S + D G P+E L L NM P+ EEF+
Sbjct: 314 VVQRSIPGGKNAFPGHLPTVLQVPGIST-LQDP-GSPTETLCLLNMVRPEELLDDEEFE- 370
Query: 574 DIKEDVEGECSKFGKLKHIFVE-------KDSAGFVYLRFENTQSAFAAQRALHGRWFAG 626
DI+ D++ EC+KFG+++ I + K G V+++FE+ + + A +AL GR F+G
Sbjct: 371 DIRTDIKQECAKFGEVRSIKIPRPIGQFPKRGCGKVFVQFESVEDSQKALKALSGRKFSG 430
Query: 627 KMITATFMVPQTYEA 641
+++ ++ P+ Y A
Sbjct: 431 RIVMTSYYDPEKYLA 445
Score = 88 (36.0 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFE----PFGTVELVQLPLD-------ETGHCKGFGFVQFA 409
RRLYVGN+ F +T++++ Q F G +D +T K F F++F
Sbjct: 111 RRLYVGNIPFGVTDEEMMQFFNHQIMALGFEAKSSHYMDGNAVLTCQTNLEKNFAFLEFR 170
Query: 410 RLEDARNALNLNGQLEIVGRAIKV 433
+++A ALN +G + G+ +K+
Sbjct: 171 SIDEASQALNFDGMV-FRGQTLKI 193
Score = 80 (33.2 bits), Expect = 7.5e-15, Sum P(3) = 7.5e-15
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-N 419
++YVG L + +DQ++++ + FG ++ + L +D T KGF F ++ +A+
Sbjct: 243 KIYVGGLPTCLNQDQVKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAG 302
Query: 420 LNGQL 424
L+G L
Sbjct: 303 LHGML 307
Score = 80 (33.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 265 CLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL 323
CL D+ V E G+++ + L+MD N+ +KG + E+ D AIA L G LL
Sbjct: 252 CLNQDQ--VKELLQSFGELKGLNLVMDTNTNLNKGFAFFEYCDPSVTDHAIAGLHGM-LL 308
Query: 324 GQPVMV 329
G +V
Sbjct: 309 GDRRLV 314
Score = 43 (20.2 bits), Expect = 7.5e-15, Sum P(3) = 7.5e-15
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 330
F +++ D ++ + K ++EF + A+ G GQ + ++
Sbjct: 140 FEAKSSHYMDGNAVLTCQTNLEKNFAFLEFRSIDEASQALNFDGMVFRGQTLKIR 194
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 154 (59.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 196 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 246
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 247 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 306
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 307 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 359
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 360 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 414
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 415 L---GLLEPKKEKEEE 427
Score = 129 (50.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 195 MNSVMLGGRNIKV 207
Score = 114 (45.2 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 466 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 520
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWF G+ + A
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVA 549
Score = 47 (21.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 245 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 304
Query: 626 GKMIT 630
GK +T
Sbjct: 305 GKAVT 309
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 154 (59.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 196 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 246
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 247 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 306
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 307 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 359
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 360 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 414
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 415 L---GLLEPKKEKEEE 427
Score = 129 (50.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 195 MNSVMLGGRNIKV 207
Score = 114 (45.2 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 466 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 520
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWF G+ + A
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKVVA 549
Score = 47 (21.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 245 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 304
Query: 626 GKMIT 630
GK +T
Sbjct: 305 GKAVT 309
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 151 (58.2 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 191 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 241
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 242 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 301
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 302 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLGTPGLV 354
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 355 SPALTLAQPLGTLPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 409
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 410 L---GLLEPKKEKEEE 422
Score = 129 (50.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 190 MNSVMLGGRNIKV 202
Score = 117 (46.2 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 461 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 515
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWFAG+ + A
Sbjct: 516 FVEFSIASETHKAIQALNGRWFAGRKVVA 544
Score = 47 (21.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 240 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 299
Query: 626 GKMIT 630
GK +T
Sbjct: 300 GKAVT 304
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 154 (59.3 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 64/316 (20%), Positives = 131/316 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 162 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 212
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 213 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 272
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 273 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 325
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P + V SV + + I
Sbjct: 326 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARP-----PIPVTIPSVGVVNPILASPPT 380
Query: 555 LLLKNMFDPKNETYEE 570
L + +PK E EE
Sbjct: 381 L---GLLEPKKEKEEE 393
Score = 129 (50.5 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 161 MNSVMLGGRNIKV 173
Score = 111 (44.1 bits), Expect = 8.3e-15, Sum P(2) = 8.3e-15
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 432 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 486
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A + L+GRWFAG+ + A
Sbjct: 487 FVEFSVASETHKAIQDLNGRWFAGRKVVA 515
Score = 47 (21.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 211 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 270
Query: 626 GKMIT 630
GK +T
Sbjct: 271 GKAVT 275
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 140 (54.3 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 38/115 (33%), Positives = 58/115 (50%)
Query: 535 LQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF- 593
LQVP S + T G P+E L L NM P EE DI ED++ EC+K+G ++ +
Sbjct: 302 LQVPGLSNVV--TSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEI 359
Query: 594 ------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAK 642
VE G V++ F + AQ+AL GR F+ +++ ++ P Y +
Sbjct: 360 PRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRR 414
Score = 96 (38.9 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVF-EPFGTVELVQLPLDETGHC-----KGFGFVQFARLEDA 414
RRLYVGN+ F +TE+++ + F + V L Q C K F F++F +++
Sbjct: 93 RRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDET 152
Query: 415 RNALNLNGQLEIVGRAIKV 433
A+ +G + + G+++K+
Sbjct: 153 TQAMAFDG-INLKGQSLKI 170
Score = 68 (29.0 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E GK+R L+ D + SKG + E+ D+ +IA L+G L + +
Sbjct: 219 NDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKL 278
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 279 IVQRASVGAKN 289
Score = 62 (26.9 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 47 DEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDS 80
D++ D + HRSR S+ R R+ DRR R+S
Sbjct: 4 DDRERDRERRRHRSR-SRDRHRERSRDRRHHRNS 36
>ZFIN|ZDB-GENE-040426-1881 [details] [associations]
symbol:u2af2b "U2 small nuclear RNA auxiliary
factor 2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0046660 "female sex differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1881 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:BX950195 EMBL:BC065869
IPI:IPI00502836 RefSeq:NP_991252.1 UniGene:Dr.77328 SMR:Q6P022
STRING:Q6P022 Ensembl:ENSDART00000023571 GeneID:402989
KEGG:dre:402989 CTD:402989 InParanoid:Q6P022 OMA:HERDKEN
NextBio:20816796 Uniprot:Q6P022
Length = 475
Score = 144 (55.7 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 535 LQVP-TASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 593
LQVP S P+ G+P+E L L NM P+ +E +I EDV+ ECSK+G++K I
Sbjct: 357 LQVPGLTSNPMIQMGGIPTEVLCLMNMVAPEELIDDEEYEEIVEDVKEECSKYGQVKSIE 416
Query: 594 VEKD-------SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAK 642
+ + G +++ F + + A + L GR FA +++ + P Y +
Sbjct: 417 IPRPVDGLDIPGTGKIFVEFTSVYDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRR 472
Score = 89 (36.4 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 36/188 (19%), Positives = 74/188 (39%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 149 RQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 208
Query: 309 MSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
A+A G Q + ++ P + + +L++G
Sbjct: 209 DETTQAMAFDGIIFQAQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSIHKLFIGG 268
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NLNGQLE 425
L + +DQ++++ FG ++ L D TG KG+ F ++ + A+ LNG ++
Sbjct: 269 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNVNDQAIAGLNG-MQ 327
Query: 426 IVGRAIKV 433
+ + + V
Sbjct: 328 LADKKLLV 335
Score = 82 (33.9 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 24/94 (25%), Positives = 44/94 (46%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 152 RRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 211
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + +++K+ D L + N
Sbjct: 212 TQAMAFDGII-FQAQSLKIRRPHDYQPLPGMSEN 244
Score = 68 (29.0 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ DV AIA L+G L + +
Sbjct: 274 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNVNDQAIAGLNGMQLADKKL 333
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 334 LVQRASVGAKN 344
Score = 65 (27.9 bits), Expect = 2.8e-14, Sum P(3) = 2.8e-14
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRS 60
DFDE+E ++ EN K+ ++ NG K E+R R RS S+ +S E+ + RS
Sbjct: 3 DFDEFE--RQLSEN----KQGDSLNGHERDK-ENRHRRRSPSRSRSRERKRRSRE--RRS 53
Query: 61 RGSKSRDESRNHDR 74
R + + R H R
Sbjct: 54 RERRGDSKERRHRR 67
Score = 47 (21.6 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 35 DRVRSRSSKCKSDEKVEDYDDDG---HRSRGSKSRDESRNHDRR-KERDS 80
D + S+ K + + ++ D HR R S SR SR RR +ER S
Sbjct: 5 DEFERQLSENKQGDSLNGHERDKENRHRRR-SPSRSRSRERKRRSRERRS 53
Score = 40 (19.1 bits), Expect = 9.8e-12, Sum P(3) = 9.8e-12
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 50 VEDYDDDGHRSRGSKSRDESRNHDRRKE 77
+ D+D+ + +K D H+R KE
Sbjct: 1 MSDFDEFERQLSENKQGDSLNGHERDKE 28
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 184 (69.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 52/194 (26%), Positives = 92/194 (47%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA- 316
T+F ++ D+ + F G V R+IM+R + +S+G GYV+F + A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE 228
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+ G+ + G+P+ + S + + + L++GNL FN D
Sbjct: 229 MQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT---LFIGNLSFNANRDN 285
Query: 377 LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 434
L VF +G V ++P +T KGFG+VQF+ +++A+ AL +NG+ I GR ++
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEY-IEGRPCRLD 344
Query: 435 AVTDQSGLQDLGAN 448
T + + N
Sbjct: 345 FSTPRDNTNNNNNN 358
Score = 67 (28.6 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 11 KMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYD--DDGHRSRGSKSRDE 68
K VE ++E + + S D S S S ++ D D D+ + S DE
Sbjct: 21 KKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKESSSDE 80
Query: 69 SRNHDRRKERDS 80
S + D+++E S
Sbjct: 81 SDDEDKKEESSS 92
Score = 66 (28.3 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 23/87 (26%), Positives = 37/87 (42%)
Query: 2 DFDEYEYLEKMVE--NPEPAKEKETANGDGNVKSEDRVRSRSSK--CKSDEKVEDYDDDG 57
D +E E E + + E KE+ ++ D K E++ S S+ SD + D D
Sbjct: 67 DEEEVEKKESSSDESDDEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDS 126
Query: 58 HRSRGSKSRDE---SRNHDRRKERDSS 81
S S +E R + KE +S+
Sbjct: 127 DSDSDSDSEEEPSKKRKAEESKEEESA 153
Score = 58 (25.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
DE + E KE + D K E+ + K +EK D + S S
Sbjct: 58 DEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDS 117
Query: 64 KSRDESRNHDRRKERDS 80
S + + D + DS
Sbjct: 118 SSSESDSDSDSDSDSDS 134
Score = 53 (23.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
+K+KE V+ E SS S E+ DDD S S DE + D E
Sbjct: 12 SKKKEEKPAK-KVEEESSSEESSSDDSSSEESSS-DDDSSDDSSSSSSDEGSDSDSSDEE 69
Query: 79 D 79
+
Sbjct: 70 E 70
Score = 49 (22.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-RSRGSKSRDESRNHDRR 75
E + + ++++ + S++ S SS + EK E D+ + +S S +++
Sbjct: 41 ESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSGSDEEEKK 100
Query: 76 KERDSS 81
+E+ SS
Sbjct: 101 EEKSSS 106
Score = 47 (21.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 35 DRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
D+ S+ + K +KVE+ S S +ES + D + SS
Sbjct: 8 DKKLSKKKEEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSS 54
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 184 (69.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 52/194 (26%), Positives = 92/194 (47%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA- 316
T+F ++ D+ + F G V R+IM+R + +S+G GYV+F + A+
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEE 228
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+ G+ + G+P+ + S + + + L++GNL FN D
Sbjct: 229 MQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT---LFIGNLSFNANRDN 285
Query: 377 LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 434
L VF +G V ++P +T KGFG+VQF+ +++A+ AL +NG+ I GR ++
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEY-IEGRPCRLD 344
Query: 435 AVTDQSGLQDLGAN 448
T + + N
Sbjct: 345 FSTPRDNTNNNNNN 358
Score = 67 (28.6 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 11 KMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYD--DDGHRSRGSKSRDE 68
K VE ++E + + S D S S S ++ D D D+ + S DE
Sbjct: 21 KKVEEESSSEESSSDDSSSEESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKESSSDE 80
Query: 69 SRNHDRRKERDS 80
S + D+++E S
Sbjct: 81 SDDEDKKEESSS 92
Score = 66 (28.3 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 23/87 (26%), Positives = 37/87 (42%)
Query: 2 DFDEYEYLEKMVE--NPEPAKEKETANGDGNVKSEDRVRSRSSK--CKSDEKVEDYDDDG 57
D +E E E + + E KE+ ++ D K E++ S S+ SD + D D
Sbjct: 67 DEEEVEKKESSSDESDDEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDSSSSESDSDS 126
Query: 58 HRSRGSKSRDE---SRNHDRRKERDSS 81
S S +E R + KE +S+
Sbjct: 127 DSDSDSDSEEEPSKKRKAEESKEEESA 153
Score = 58 (25.5 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
DE + E KE + D K E+ + K +EK D + S S
Sbjct: 58 DEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSGSDEEEKKEEKSSSSDSEDSSSSDS 117
Query: 64 KSRDESRNHDRRKERDS 80
S + + D + DS
Sbjct: 118 SSSESDSDSDSDSDSDS 134
Score = 53 (23.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 18/61 (29%), Positives = 24/61 (39%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
+K+KE V+ E SS S E+ DDD S S DE + D E
Sbjct: 12 SKKKEEKPAK-KVEEESSSEESSSDDSSSEESSS-DDDSSDDSSSSSSDEGSDSDSSDEE 69
Query: 79 D 79
+
Sbjct: 70 E 70
Score = 49 (22.3 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-RSRGSKSRDESRNHDRR 75
E + + ++++ + S++ S SS + EK E D+ + +S S +++
Sbjct: 41 ESSSDDDSSDDSSSSSSDEGSDSDSSDEEEVEKKESSSDESDDEDKKEESSSGSDEEEKK 100
Query: 76 KERDSS 81
+E+ SS
Sbjct: 101 EEKSSS 106
Score = 47 (21.6 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 35 DRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
D+ S+ + K +KVE+ S S +ES + D + SS
Sbjct: 8 DKKLSKKKEEKPAKKVEEESSSEESSSDDSSSEESSSDDDSSDDSSS 54
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 191 (72.3 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 55/188 (29%), Positives = 94/188 (50%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
+F + E +++ F + G++ R++ +R++ RS+G GYVEF + A A+
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 318 SGQPLLGQPVMVKPSE---AEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTE 374
+ G+ + + + A K+ L+VGNL F+ E
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSANE 397
Query: 375 DQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIK 432
D + +VF P G V ++LP D E+G KGFG+VQ++ +++AR A N L G EI GR I+
Sbjct: 398 DSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGA-EIDGRPIR 456
Query: 433 VSAVTDQS 440
+ T ++
Sbjct: 457 LDFSTPRA 464
Score = 144 (55.7 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422
L+VGNL +N+TE+ L Q FE FG + + +TG +GFG+V+F DA A
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMK 338
Query: 423 QLEIVGRAIKVSAVTDQSGLQDLG 446
+ EI GR I + T + +D G
Sbjct: 339 EHEIDGRKINLDYATGRPANKDQG 362
Score = 101 (40.6 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 27/81 (33%), Positives = 38/81 (46%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-A 316
T+F + A+E V+E F G V +RL D S R KG GYV++ V A
Sbjct: 385 TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNE 444
Query: 317 LSGQPLLGQPVMVKPSEAEKN 337
L G + G+P+ + S N
Sbjct: 445 LQGAEIDGRPIRLDFSTPRAN 465
Score = 64 (27.6 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 21/81 (25%), Positives = 29/81 (35%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKV--EDYDDDGHR 59
D D + + E P+ AK K + D + +K K D K E+ D D
Sbjct: 168 DSDSDDESSEEEEVPK-AKAKAAESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDS 226
Query: 60 SRGSKSRDESRNHDRRKERDS 80
S S DE + DS
Sbjct: 227 SESSSDSDEESGSSGSESEDS 247
Score = 59 (25.8 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 20/65 (30%), Positives = 28/65 (43%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
E+ E A K A GD E+ S S E D D++ S GS+S D + D
Sbjct: 200 ESEEEAPAK--AKGDAKTSKEES----DSDSDSSESSSDSDEESGSS-GSESEDSDKPAD 252
Query: 74 RRKER 78
+K +
Sbjct: 253 SKKRK 257
Score = 58 (25.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 12/76 (15%), Positives = 30/76 (39%)
Query: 5 EYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSK 64
E + ++K + + + ++ D E+ V +K ED D + +K
Sbjct: 149 EPKVVKKAESSESESSDSSDSDSDDESSEEEEVPKAKAKAAESSDSEDSDSESEEEAPAK 208
Query: 65 SRDESRNHDRRKERDS 80
++ +++ + DS
Sbjct: 209 AKGDAKTSKEESDSDS 224
Score = 55 (24.4 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVR-SRSSKC--KSDEKVEDYDDDGHRSRGSKSRDESR 70
++ E K+ ++ D +SE+ + ++S+K K +K E + + S S S DES
Sbjct: 117 DSDEEMKDASSSESDSESESEEEKKPAKSAKAEPKVVKKAESSESESSDSSDSDSDDESS 176
Query: 71 NHD 73
+
Sbjct: 177 EEE 179
Score = 54 (24.1 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 31 VKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
VK E + SS+ +SD D D++ + S+S ES + + +K S+
Sbjct: 98 VKKEAKKAESSSESESDSS--DSDEEMKDASSSESDSESESEEEKKPAKSA 146
Score = 48 (22.0 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 600 GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
GF Y+++ + A A L G G+ I F P+
Sbjct: 426 GFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPR 463
Score = 38 (18.4 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEK 49
++ E + + + +G +SED + SK + E+
Sbjct: 225 DSSESSSDSDEESGSSGSESEDSDKPADSKKRKAEE 260
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 155 (59.6 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 67/301 (22%), Positives = 117/301 (38%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
V+ I + E + F+ G ++ + + D +++ KG +VE+ +A+ +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 318 SGQPLLGQPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G + G+ + V +PS N+ Q R+YV ++H +++E+
Sbjct: 192 NGALMGGRNIKVGRPS----NMPQAQQVIDEVQEEAKSF-----NRIYVASIHPDLSEED 242
Query: 377 LRQVFEPFGTVELVQLPLDETGHC-KGFGFVQFAR---LEDA---RNALNLNGQLEIVGR 429
++ VFE FG + +L + H KG+GF+++A +++A N +L GQL VGR
Sbjct: 243 IKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGR 302
Query: 430 AI---KVSAVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRAL-LMQKLDRSGSATTIA 485
+I A + A L A + L L Q + +
Sbjct: 303 SITPPNALACPTTNSTMPTAAAVAAAAATAKIQALDAVASNAVLGLSQNTPVMAAGAVVT 362
Query: 486 GSAVTPAVNXXXXXXXXXXXXXXXXXVSTLVPP-LVQGTVPTHPGQLGT--ALQVPTASV 542
P V+ L+PP + Q P P LG LQ A V
Sbjct: 363 KVGAMPVVSAATSAAALHPALAQAA--PALLPPGIFQAPTPVAPSLLGVPAGLQPLQAVV 420
Query: 543 P 543
P
Sbjct: 421 P 421
Score = 128 (50.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALN- 419
R+YVG++ F + ED +R F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190
Query: 420 LNGQLEIVGRAIKVSAVTDQSGLQDL 445
+NG L + GR IKV ++ Q +
Sbjct: 191 MNGAL-MGGRNIKVGRPSNMPQAQQV 215
Score = 103 (41.3 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH--IFVEK-------DSAG 600
V S ++L+NM P E+ D ++E+++ ECSKFG + IF EK D A
Sbjct: 534 VDSRVIILRNMVGP-----EDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAE 588
Query: 601 FV---YLRFENTQSAFAAQRALHGRWFAGKMITA 631
+ ++ F A + AL GR+F G+ + A
Sbjct: 589 IIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVA 622
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 187 (70.9 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 59/192 (30%), Positives = 85/192 (44%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA- 316
T+F + D+ + E F G V R+I DR S RSKG GYV+F A
Sbjct: 240 TLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGE 299
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
G + G+ + V S + L+VGNL F+ ED
Sbjct: 300 KQGAFIDGREIKVDFSTGKAT--NSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDS 357
Query: 377 LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 434
+ F V+ ++LP + E+G KGFG+V F +EDA++A LNGQ I GR ++
Sbjct: 358 VGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQ-SINGRNCRLD 416
Query: 435 AVTDQSGLQDLG 446
T + +D G
Sbjct: 417 YSTPRPPREDGG 428
Score = 64 (27.6 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 16 PEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRR 75
P P KEK N D ++ +S SS SD D D + ++ D+++ +
Sbjct: 125 PAP-KEKAATNVDKKAAAKKVEKSESSDSDSDSSDSDESDSDAKPAKAEKTDKAKKEETD 183
Query: 76 KERDS 80
+ DS
Sbjct: 184 SDSDS 188
Score = 56 (24.8 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 11 KMVENPEPA-KEKETANGDGNVKSEDRVRS-RSSKCKSDEKVEDYDDDGHR-SRGSKSRD 67
K VE E + + ++++ D + ++ ++ K K +E D D D S GS S D
Sbjct: 142 KKVEKSESSDSDSDSSDSDESDSDAKPAKAEKTDKAKKEETDSDSDSDSDSDSSGSDSSD 201
Query: 68 ESRNHDRRKERDS 80
+ + E S
Sbjct: 202 DEEEKPAKTEAPS 214
Score = 45 (20.9 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK 76
+PAK ++T K E+ S SD D DD + +K+ S+ +
Sbjct: 167 KPAKAEKT----DKAKKEETDSDSDSDSDSDSSGSDSSDD-EEEKPAKTEAPSKKRKAEE 221
Query: 77 ERDS 80
E ++
Sbjct: 222 EEEA 225
Score = 43 (20.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 13 VENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVE---DYDDDGHRSRGSKSRDES 69
V++ K +T++ ++D V ++SK +KVE + D D S S D
Sbjct: 17 VKSAGVTKPSQTSSAKSKKIAKD-VAVKASKKDKKKKVEVSSESDSDSDASDSSSDSDSE 75
Query: 70 RNHDRRK 76
+ +K
Sbjct: 76 SEVEEKK 82
Score = 42 (19.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 17/75 (22%), Positives = 28/75 (37%)
Query: 10 EKMVE-NPEPAKEKETANGDGNVKSEDRVRSR-------SSKCKSDEKVEDYDDDGHRSR 61
+K VE + E + + ++ + SE V + + K K K E D D
Sbjct: 50 KKKVEVSSESDSDSDASDSSSDSDSESEVEEKKPTKAATNGKAKKAAKAESSDSDSSSES 109
Query: 62 GSKSRDESRNHDRRK 76
+ S D S + K
Sbjct: 110 EADSSDSSDSESDAK 124
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 180 (68.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 52/179 (29%), Positives = 87/179 (48%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA- 316
T+F ++ D+ + + F G V R+I +R + RS+G GYV+F + AI
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+ G+ + G+P+ S ++ L++GNL FN D
Sbjct: 229 MQGKEIDGRPINCDMSTSKP------AGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDA 282
Query: 377 LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ ++F G V V++P ET KGFG+VQF+ +EDA+ AL+ L G+ I R +++
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY-IDNRPVRL 340
Score = 100 (40.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-A 316
T+F + AD ++E F++ G+V VR+ + + KG GYV+F ++ A+ A
Sbjct: 268 TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDA 327
Query: 317 LSGQPLLGQPVMVKPSEAEKN 337
L G+ + +PV + S N
Sbjct: 328 LQGEYIDNRPVRLDFSSPRPN 348
Score = 67 (28.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK 76
E +K+ +++ D + E+ +K + ++ D S S+S E N +RK
Sbjct: 83 EESKDSSSSSSDSSSDEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRK 142
Query: 77 ERDS 80
D+
Sbjct: 143 SEDA 146
Score = 59 (25.8 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSE---DRVRSRSSKCKSDEKVEDYDDDGHRS 60
DE E EK E +KE +++ + S+ ++ S K KS++ E+ D++ S
Sbjct: 98 DEEEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEE---S 154
Query: 61 RGSKSRDE 68
K ++E
Sbjct: 155 SNKKQKNE 162
Score = 59 (25.8 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 12/65 (18%), Positives = 33/65 (50%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK 76
E +EKE + + +S S SS S+ + E+ +D +S ++ ++ + ++++
Sbjct: 100 EEEEEKEETKKEESKESSSSDSSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSNKKQ 159
Query: 77 ERDSS 81
+ + +
Sbjct: 160 KNEET 164
Score = 58 (25.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRR 75
E AK +++ + + S S S S+ +S+ D S S S ES ++
Sbjct: 23 EKAKAVSSSSSESSSSSSSSSESESESESESESSSSSSSSDSESSSSSSSDSESEAETKK 82
Query: 76 KE-RDSS 81
+E +DSS
Sbjct: 83 EESKDSS 89
Score = 57 (25.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRR 75
E E E+++ + SE S S S+ +++ K E+ D S S S +E
Sbjct: 48 ESESESESSSSSSSSDSESSSSSSSDSESEAETKKEESKDSSSSSSDSSSDEEEEEEKEE 107
Query: 76 KERDSS 81
+++ S
Sbjct: 108 TKKEES 113
Score = 51 (23.0 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
++ A+ K+ + D + S D S S + + +EK E ++ S S S S + D
Sbjct: 73 DSESEAETKKEESKDSSSSSSD---SSSDEEEEEEKEETKKEESKESSSSDSSSSSSS-D 128
Query: 74 RRKERDSS 81
E++ S
Sbjct: 129 SESEKEES 136
Score = 49 (22.3 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
+ +++ + +SE S SS SD + S ++ES++
Sbjct: 35 SSSSSSSSSESESESESESESSSSSSSSDSESSSSSSSDSESEAETKKEESKDSSSSSSD 94
Query: 79 DSS 81
SS
Sbjct: 95 SSS 97
Score = 40 (19.1 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 40 RSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
++SK +EK + S S S + E +SS
Sbjct: 15 KASKQAKEEKAKAVSSSSSESSSSSSSSSESESESESESESS 56
>MGI|MGI:98886 [details] [associations]
symbol:U2af2 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IDA] [GO:0016607 "nuclear speck" evidence=TAS]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0070742 "C2H2 zinc finger domain binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:98886
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:X64587 EMBL:AK078496
IPI:IPI00113746 PIR:S22646 RefSeq:NP_001192160.1 UniGene:Mm.360389
PDB:3V4M PDBsum:3V4M ProteinModelPortal:P26369 SMR:P26369
STRING:P26369 PhosphoSite:P26369 PaxDb:P26369 PRIDE:P26369
Ensembl:ENSMUST00000005041 GeneID:22185 KEGG:mmu:22185
UCSC:uc009ezu.2 InParanoid:P26369 NextBio:302149 PMAP-CutDB:P26369
Bgee:P26369 Genevestigator:P26369 GermOnline:ENSMUSG00000030435
Uniprot:P26369
Length = 475
Score = 131 (51.2 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 38/127 (29%), Positives = 58/127 (45%)
Query: 523 TVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGE 582
++P+ Q LQVP G P+E L L NM P+ +E +I EDV E
Sbjct: 346 SLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDE 405
Query: 583 CSKFGKLKHIF-------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMV 635
CSK+G +K I VE G +++ F + A + L GR FA +++ +
Sbjct: 406 CSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 465
Query: 636 PQTYEAK 642
P +Y +
Sbjct: 466 PDSYHRR 472
Score = 96 (38.9 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 36/177 (20%), Positives = 69/177 (38%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 309 MSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
A+A G GQ + ++ P + + +L++G
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NLNG 422
L + +DQ++++ FG ++ L D TG KG+ F ++ + A+ LNG
Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
Score = 87 (35.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + G+++K+ D L + N
Sbjct: 209 TQAMAFDGII-FQGQSLKIRRPHDYQPLPGMSEN 241
Score = 67 (28.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ D+ AIA L+G L + +
Sbjct: 271 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 330
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 331 LVQRASVGAKN 341
Score = 63 (27.2 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFDE+E ++ EN + ++KE + +S R RSR K +S + D +R +
Sbjct: 3 DFDEFE--RQLNENKQE-RDKENRH---RKRSHSRSRSRDRKRRSRSR-----DRRNRDQ 51
Query: 62 GSKSRDESR 70
S SRD R
Sbjct: 52 RSASRDRRR 60
Score = 48 (22.0 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 30 NVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK-ERD 79
N ++R + + +S + D R R S+SRD RN D+R RD
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRD----RKRRSRSRDR-RNRDQRSASRD 57
Score = 46 (21.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 SDEKVEDYDDDGHRSRG---SKSRDE---SRNHDRRK--ERDSS 81
++ K E ++ HR R S+SRD SR+ DRR +R +S
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSAS 55
>RGD|1597319 [details] [associations]
symbol:LOC690372 "similar to U2 (RNU2) small nuclear RNA
auxiliary factor 2 isoform b" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0070742 "C2H2 zinc
finger domain binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1597319 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102089
KO:K12837 TIGRFAMs:TIGR01642 CTD:11338 IPI:IPI00366387
RefSeq:XP_003748811.1 UniGene:Rn.15383 ProteinModelPortal:F2Z3T9
SMR:F2Z3T9 PRIDE:F2Z3T9 Ensembl:ENSRNOT00000021391 GeneID:308335
KEGG:rno:308335 NextBio:740780 Uniprot:F2Z3T9
Length = 475
Score = 131 (51.2 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 38/127 (29%), Positives = 58/127 (45%)
Query: 523 TVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGE 582
++P+ Q LQVP G P+E L L NM P+ +E +I EDV E
Sbjct: 346 SLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDE 405
Query: 583 CSKFGKLKHIF-------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMV 635
CSK+G +K I VE G +++ F + A + L GR FA +++ +
Sbjct: 406 CSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 465
Query: 636 PQTYEAK 642
P +Y +
Sbjct: 466 PDSYHRR 472
Score = 96 (38.9 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 36/177 (20%), Positives = 69/177 (38%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 309 MSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
A+A G GQ + ++ P + + +L++G
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NLNG 422
L + +DQ++++ FG ++ L D TG KG+ F ++ + A+ LNG
Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
Score = 87 (35.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + G+++K+ D L + N
Sbjct: 209 TQAMAFDGII-FQGQSLKIRRPHDYQPLPGMSEN 241
Score = 67 (28.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ D+ AIA L+G L + +
Sbjct: 271 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 330
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 331 LVQRASVGAKN 341
Score = 63 (27.2 bits), Expect = 2.7e-13, Sum P(3) = 2.7e-13
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFDE+E ++ EN + ++KE + +S R RSR K +S + D +R +
Sbjct: 3 DFDEFE--RQLNENKQE-RDKENRH---RKRSHSRSRSRDRKRRSRSR-----DRRNRDQ 51
Query: 62 GSKSRDESR 70
S SRD R
Sbjct: 52 RSASRDRRR 60
Score = 48 (22.0 bits), Expect = 8.9e-12, Sum P(3) = 8.9e-12
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 30 NVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK-ERD 79
N ++R + + +S + D R R S+SRD RN D+R RD
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRD----RKRRSRSRDR-RNRDQRSASRD 57
Score = 46 (21.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 SDEKVEDYDDDGHRSRG---SKSRDE---SRNHDRRK--ERDSS 81
++ K E ++ HR R S+SRD SR+ DRR +R +S
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSAS 55
>UNIPROTKB|Q5QP22 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL357374
UniGene:Hs.282901 HGNC:HGNC:15923 HOGENOM:HOG000236253
ChiTaRS:RBM39 IPI:IPI00644764 SMR:Q5QP22 STRING:Q5QP22
Ensembl:ENST00000434927 Uniprot:Q5QP22
Length = 193
Score = 138 (53.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRS 297
RD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRS
Sbjct: 150 RDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Score = 79 (32.9 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 9 LEKMVENPEPAKEKETANGDGNV-------KSEDRVRSRSSK-CKSDEKVEDYDDDGHRS 60
+E M+E P E + ++ +G+ KS+ R RS K KS E+ D + +S
Sbjct: 7 IEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKS 66
Query: 61 RGSKSRDESRNHDRRKERDSS 81
+ S+ R SR+ +RR+ R S
Sbjct: 67 K-SRERKRSRSKERRRSRSRS 86
Score = 58 (25.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRS---SKCKSDEKVEDYDDDGHRSRGSKSR 66
E+ + + +K + ++ KS++R RSR K KS E+ + RSR S+SR
Sbjct: 29 EERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERKRSRSKERRRSR-SRSR 87
Query: 67 D 67
D
Sbjct: 88 D 88
>UNIPROTKB|P26368 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0070742
"C2H2 zinc finger domain binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006406 GO:GO:0000398
EMBL:CH471135 Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 PDB:4FXW PDBsum:4FXW
eggNOG:NOG298004 HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP PDB:1JMT PDBsum:1JMT EMBL:X64044 EMBL:BC008740
EMBL:BC030574 IPI:IPI00031556 IPI:IPI00830039 PIR:S20250
RefSeq:NP_001012496.1 RefSeq:NP_009210.1 UniGene:Hs.528007 PDB:1O0P
PDB:1OPI PDB:1U2F PDB:2G4B PDB:2HZC PDB:2U2F PDB:2YH0 PDB:2YH1
PDBsum:1O0P PDBsum:1OPI PDBsum:1U2F PDBsum:2G4B PDBsum:2HZC
PDBsum:2U2F PDBsum:2YH0 PDBsum:2YH1 ProteinModelPortal:P26368
SMR:P26368 DIP:DIP-2154N IntAct:P26368 MINT:MINT-1192370
STRING:P26368 PhosphoSite:P26368 DMDM:267188 PaxDb:P26368
PRIDE:P26368 DNASU:11338 Ensembl:ENST00000308924
Ensembl:ENST00000450554 GeneID:11338 KEGG:hsa:11338 UCSC:uc002qlt.3
UCSC:uc002qlu.3 CTD:11338 GeneCards:GC19P056165 HGNC:HGNC:23156
HPA:CAB010910 MIM:191318 neXtProt:NX_P26368 PharmGKB:PA134908683
HOVERGEN:HBG062169 InParanoid:P26368 OrthoDB:EOG4PRSQX
PhylomeDB:P26368 ChiTaRS:U2AF2 EvolutionaryTrace:P26368
GenomeRNAi:11338 NextBio:43079 PMAP-CutDB:P26368 Bgee:P26368
CleanEx:HS_U2AF2 Genevestigator:P26368 GermOnline:ENSG00000063244
Uniprot:P26368
Length = 475
Score = 130 (50.8 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 42/137 (30%), Positives = 61/137 (44%)
Query: 513 STLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFD 572
+TLV P P+ Q LQVP G P+E L L NM P+ +E
Sbjct: 342 ATLVSP------PSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEY 395
Query: 573 MDIKEDVEGECSKFGKLKHIF-------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFA 625
+I EDV ECSK+G +K I VE G +++ F + A + L GR FA
Sbjct: 396 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 455
Query: 626 GKMITATFMVPQTYEAK 642
+++ + P +Y +
Sbjct: 456 NRVVVTKYCDPDSYHRR 472
Score = 96 (38.9 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 36/177 (20%), Positives = 69/177 (38%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 309 MSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
A+A G GQ + ++ P + + +L++G
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NLNG 422
L + +DQ++++ FG ++ L D TG KG+ F ++ + A+ LNG
Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
Score = 87 (35.7 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + G+++K+ D L + N
Sbjct: 209 TQAMAFDGII-FQGQSLKIRRPHDYQPLPGMSEN 241
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ D+ AIA L+G L + +
Sbjct: 271 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 330
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 331 LVQRASVGAKN 341
Score = 63 (27.2 bits), Expect = 3.5e-13, Sum P(3) = 3.5e-13
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFDE+E ++ EN + ++KE + +S R RSR K +S + D +R +
Sbjct: 3 DFDEFE--RQLNENKQE-RDKENRH---RKRSHSRSRSRDRKRRSRSR-----DRRNRDQ 51
Query: 62 GSKSRDESR 70
S SRD R
Sbjct: 52 RSASRDRRR 60
Score = 48 (22.0 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 30 NVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK-ERD 79
N ++R + + +S + D R R S+SRD RN D+R RD
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRD----RKRRSRSRDR-RNRDQRSASRD 57
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 SDEKVEDYDDDGHRSRG---SKSRDE---SRNHDRRK--ERDSS 81
++ K E ++ HR R S+SRD SR+ DRR +R +S
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSAS 55
>UNIPROTKB|Q24JZ8 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070742 "C2H2 zinc finger domain binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006529
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0048025
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 HOGENOM:HOG000180745
KO:K12837 TIGRFAMs:TIGR01642 OMA:TQMGGLP CTD:11338
HOVERGEN:HBG062169 OrthoDB:EOG4PRSQX EMBL:DAAA02047732
EMBL:BC114160 IPI:IPI00705989 RefSeq:NP_001068804.1
UniGene:Bt.41502 SMR:Q24JZ8 STRING:Q24JZ8
Ensembl:ENSBTAT00000003664 GeneID:507895 KEGG:bta:507895
InParanoid:Q24JZ8 NextBio:20868263 Uniprot:Q24JZ8
Length = 475
Score = 128 (50.1 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 42/137 (30%), Positives = 61/137 (44%)
Query: 513 STLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFD 572
+TLV PL T+ P LQVP G P+E L L NM P+ +E
Sbjct: 342 ATLVSPL--STINQTP----VTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEY 395
Query: 573 MDIKEDVEGECSKFGKLKHIF-------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFA 625
+I EDV EC K+G +K I VE G +++ F + A + L GR FA
Sbjct: 396 EEIVEDVRDECGKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 455
Query: 626 GKMITATFMVPQTYEAK 642
+++ + P +Y +
Sbjct: 456 NRVVVTKYCDPDSYHRR 472
Score = 96 (38.9 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 36/177 (20%), Positives = 69/177 (38%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 309 MSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
A+A G GQ + ++ P + + +L++G
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NLNG 422
L + +DQ++++ FG ++ L D TG KG+ F ++ + A+ LNG
Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
Score = 87 (35.7 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + G+++K+ D L + N
Sbjct: 209 TQAMAFDGII-FQGQSLKIRRPHDYQPLPGMSEN 241
Score = 67 (28.6 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ D+ AIA L+G L + +
Sbjct: 271 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 330
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 331 LVQRASVGAKN 341
Score = 63 (27.2 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFDE+E ++ EN + ++KE + +S R RSR K +S + D +R +
Sbjct: 3 DFDEFE--RQLNENKQE-RDKENRH---RKRSHSRSRSRDRKRRSRSR-----DRRNRDQ 51
Query: 62 GSKSRDESR 70
S SRD R
Sbjct: 52 RSASRDRRR 60
Score = 48 (22.0 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 30 NVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK-ERD 79
N ++R + + +S + D R R S+SRD RN D+R RD
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRD----RKRRSRSRDR-RNRDQRSASRD 57
Score = 46 (21.3 bits), Expect = 3.1e-11, Sum P(3) = 3.1e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 SDEKVEDYDDDGHRSRG---SKSRDE---SRNHDRRK--ERDSS 81
++ K E ++ HR R S+SRD SR+ DRR +R +S
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSAS 55
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 149 (57.5 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 66/343 (19%), Positives = 143/343 (41%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 94 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 153
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 154 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 204
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 205 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 264
Query: 435 AVTDQSGLQDLGANTTXXXXXXXXXXLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494
AVT L T + A ++ + + +G+A + G+ TP +
Sbjct: 265 AVTPPMPLL---TPATPGGLPPAAAVAAAAATAKITAQEAV--AGAA--VLGTLATPGLV 317
Query: 495 XXXXXXXXXXXXXXXXXVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554
++ P ++ G P P T QV + PI + P+
Sbjct: 318 SPALTLAQPLGALPQAVMAAQAPGVITGVTPARPPIPVTIPQVGVVN-PILAS--PPALG 374
Query: 555 LLLKNMFDPKNETYEEFDM-DIKEDVEGECSKFGKLKHIFVEK 596
L+ + E ++E + ++ + E +H+ ++K
Sbjct: 375 LMEVKKEKEEEEVFQESERPEMLSEQEHMSISGSSARHMVMQK 417
Score = 129 (50.5 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 153 MNSVMLGGRNIKV 165
Score = 118 (46.6 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM DPK + D D++ +V EC KFG + + + ++ G +
Sbjct: 424 STVMVLRNMVDPK-----DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKI 478
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+GRWFAG+ + A
Sbjct: 479 FVEFSMASETHKAIQALNGRWFAGRKVVA 507
Score = 47 (21.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 203 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 262
Query: 626 GKMIT 630
GK +T
Sbjct: 263 GKAVT 267
>UNIPROTKB|E2R0G3 [details] [associations]
symbol:U2AF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00690000102089 KO:K12837 TIGRFAMs:TIGR01642
OMA:TQMGGLP CTD:11338 EMBL:AAEX03000723 RefSeq:XP_003638845.1
ProteinModelPortal:E2R0G3 Ensembl:ENSCAFT00000004031
GeneID:100687048 KEGG:cfa:100687048 Uniprot:E2R0G3
Length = 471
Score = 126 (49.4 bits), Expect = 9.5e-13, Sum P(3) = 9.5e-13
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 530 QLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKL 589
Q LQVP G P+E L L NM P+ +E +I EDV ECSK+G +
Sbjct: 349 QTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLV 408
Query: 590 KHIF-------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAK 642
K I VE G +++ F + A + L GR FA +++ + P +Y +
Sbjct: 409 KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 468
Score = 96 (38.9 bits), Expect = 9.5e-13, Sum P(3) = 9.5e-13
Identities = 36/177 (20%), Positives = 69/177 (38%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFS---RAGKVRDV--RLIMDRNSRRSKGVGYVEFYDV 308
R R ++ I E + +FF+ R G + ++ + K ++EF V
Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205
Query: 309 MSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
A+A G GQ + ++ P + + +L++G
Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NLNG 422
L + +DQ++++ FG ++ L D TG KG+ F ++ + A+ LNG
Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 322
Score = 87 (35.7 bits), Expect = 7.8e-12, Sum P(3) = 7.8e-12
Identities = 25/94 (26%), Positives = 45/94 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-----ETGHCKGFGFVQFARLEDA 414
RRLYVGN+ F +TE+ + F + L Q P + + K F F++F +++
Sbjct: 149 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDET 208
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
A+ +G + G+++K+ D L + N
Sbjct: 209 TQAMAFDGII-FQGQSLKIRRPHDYQPLPGMSEN 241
Score = 67 (28.6 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ D+ AIA L+G L + +
Sbjct: 271 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 330
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 331 LVQRASVGAKN 341
Score = 63 (27.2 bits), Expect = 9.5e-13, Sum P(3) = 9.5e-13
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
DFDE+E ++ EN + ++KE + +S R RSR K +S + D +R +
Sbjct: 3 DFDEFE--RQLNENKQE-RDKENRH---RKRSHSRSRSRDRKRRSRSR-----DRRNRDQ 51
Query: 62 GSKSRDESR 70
S SRD R
Sbjct: 52 RSASRDRRR 60
Score = 48 (22.0 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 30 NVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRK-ERD 79
N ++R + + +S + D R R S+SRD RN D+R RD
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRD----RKRRSRSRDR-RNRDQRSASRD 57
Score = 46 (21.3 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 46 SDEKVEDYDDDGHRSRG---SKSRDE---SRNHDRRK--ERDSS 81
++ K E ++ HR R S+SRD SR+ DRR +R +S
Sbjct: 12 NENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDRRNRDQRSAS 55
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 137 (53.3 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
+ L + NL ++ TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN
Sbjct: 401 KTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 457
Query: 421 NGQLEIVGRAIKV 433
+ EI GRAI++
Sbjct: 458 CNKREIEGRAIRL 470
Score = 112 (44.5 bits), Expect = 9.1e-07, Sum P(3) = 9.1e-07
Identities = 32/126 (25%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+FN + +L+ + +
Sbjct: 193 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL 252
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 253 FAKNDLAVVDV-RIGVSRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 310
Query: 444 DLGANT 449
D A T
Sbjct: 311 DRDART 316
Score = 91 (37.1 bits), Expect = 6.9e-06, Sum P(3) = 6.9e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ L+V L + TE+ L++ F+ G++ ++ D ETG KGFGFV F EDA+ A
Sbjct: 487 KTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 543
Query: 420 LNGQLEIVGRAI 431
EI G +
Sbjct: 544 AMEDGEIDGNKV 555
Score = 82 (33.9 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA L
Sbjct: 315 RTLLAKNLPYKVTQDELKEVFEDAVEIRLVS----KDGKSKGIAYIEFKTEADAEKTLEE 370
Query: 421 NGQLEI 426
EI
Sbjct: 371 KQGTEI 376
Score = 67 (28.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 312 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEF 358
Score = 67 (28.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 21/78 (26%), Positives = 29/78 (37%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D DE E E+ E+ + E G V ++ DE ED DDD
Sbjct: 107 DDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEE 166
Query: 62 GSKSRDESRNHDRRKERD 79
DE +HD +E +
Sbjct: 167 EEDDDDED-DHDDEEEEE 183
Score = 53 (23.7 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
PS+ L +K + + +T EE +KE +G I +++ S GF ++ F
Sbjct: 485 PSKTLFVKGLSE---DTTEE---TLKESFDGSIRA-----RIVTDRETGSSKGFGFVDFN 533
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
+ + A AA+ A+ G +T + P+
Sbjct: 534 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 563
Score = 50 (22.7 bits), Expect = 7.1e-11, Sum P(4) = 7.1e-11
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSD--EKVEDYDDDGHRSR 61
DE + E+ +E PAK K+ VK++ + D E+ E+ DDD
Sbjct: 118 DEDDSEEEPMEIV-PAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEEEEDDDDEDDH 176
Query: 62 GSKSRDESRNHDRRKE 77
+ +E + +E
Sbjct: 177 DDEEEEEEEEEEEEEE 192
Score = 49 (22.3 bits), Expect = 8.9e-11, Sum P(4) = 8.9e-11
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 11 KMVENPEPAKEKETANGDGNVKSED-RVRSRSSK-----CKSDEKVEDYDDDGHRSRGSK 64
K +N + A+++++ D + K ++ VR ++ DE ED DDD +
Sbjct: 56 KGAKNGKNARKEDSDEEDEDDKEDEPAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEEEE 115
Query: 65 SRDESRNHDRRKE 77
DE + + E
Sbjct: 116 EEDEDDSEEEPME 128
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(4) = 1.1e-10
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
S+ GYV+F + A+ L+G + G + + KP
Sbjct: 268 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 303
Score = 46 (21.3 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P K K TA + +D + +E+ +D D+D H + +E +
Sbjct: 143 PVKAKSTAEDEDEEDDDD-------DDEEEEEEDDDDEDDHDDEEEEEEEEEEEEEEEPV 195
Query: 78 RDS 80
+++
Sbjct: 196 KEA 198
Score = 40 (19.1 bits), Expect = 6.9e-10, Sum P(4) = 6.9e-10
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVE 51
D D+++ E+ E E +E+E + ++ + +++ +KVE
Sbjct: 172 DEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 221
Score = 39 (18.8 bits), Expect = 8.6e-10, Sum P(4) = 8.6e-10
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYD 54
D +E E E+ E EP KE K + ++ K + E ++
Sbjct: 178 DEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFN 230
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 147 (56.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 43/183 (23%), Positives = 90/183 (49%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 95 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQM 154
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 155 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHPDLSDDD 205
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + A++A++ ++ G+ ++V
Sbjct: 206 IKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGK 265
Query: 435 AVT 437
AVT
Sbjct: 266 AVT 268
Score = 128 (50.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 154 MNSVMLGGRNIKV 166
Score = 97 (39.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF---------V 602
S ++L+NM P E+ D D++ +V EC KFG + + + ++ G +
Sbjct: 440 STVMVLRNMVGP-----EDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEVIVKI 494
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F A +AL+ RWF G+ + A
Sbjct: 495 FVEFSAASEMNKAIQALNNRWFGGRKVIA 523
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 137 (53.3 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
+ L + NL ++ TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN
Sbjct: 406 KTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 462
Query: 421 NGQLEIVGRAIKV 433
+ EI GRAI++
Sbjct: 463 CNKREIEGRAIRL 475
Score = 112 (44.5 bits), Expect = 9.4e-07, Sum P(3) = 9.4e-07
Identities = 32/126 (25%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+FN + +L+ + +
Sbjct: 198 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL 257
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 258 FAKNDLAVVDV-RIGVSRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 315
Query: 444 DLGANT 449
D A T
Sbjct: 316 DRDART 321
Score = 91 (37.1 bits), Expect = 7.0e-06, Sum P(3) = 7.0e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ L+V L + TE+ L++ F+ G++ ++ D ETG KGFGFV F EDA+ A
Sbjct: 492 KTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 548
Query: 420 LNGQLEIVGRAI 431
EI G +
Sbjct: 549 AMEDGEIDGNKV 560
Score = 82 (33.9 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA L
Sbjct: 320 RTLLAKNLPYKVTQDELKEVFEDAVEIRLVS----KDGKSKGIAYIEFKTEADAEKTLEE 375
Query: 421 NGQLEI 426
EI
Sbjct: 376 KQGTEI 381
Score = 67 (28.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 317 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEF 363
Score = 67 (28.6 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 21/78 (26%), Positives = 29/78 (37%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D DE E E+ E+ + E G V ++ DE ED DDD
Sbjct: 112 DDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEE 171
Query: 62 GSKSRDESRNHDRRKERD 79
DE +HD +E +
Sbjct: 172 EEDDDDED-DHDDEEEEE 188
Score = 53 (23.7 bits), Expect = 1.5e-12, Sum P(4) = 1.5e-12
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
PS+ L +K + + +T EE +KE +G I +++ S GF ++ F
Sbjct: 490 PSKTLFVKGLSE---DTTEE---TLKESFDGSIRA-----RIVTDRETGSSKGFGFVDFN 538
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
+ + A AA+ A+ G +T + P+
Sbjct: 539 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 50 (22.7 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 18/76 (23%), Positives = 31/76 (40%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSD--EKVEDYDDDGHRSR 61
DE + E+ +E PAK K+ VK++ + D E+ E+ DDD
Sbjct: 123 DEDDSEEEPMEIV-PAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEEEEDDDDEDDH 181
Query: 62 GSKSRDESRNHDRRKE 77
+ +E + +E
Sbjct: 182 DDEEEEEEEEEEEEEE 197
Score = 48 (22.0 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
S+ GYV+F + A+ L+G + G + + KP
Sbjct: 273 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 308
Score = 46 (21.3 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P K K TA + +D + +E+ +D D+D H + +E +
Sbjct: 148 PVKAKSTAEDEDEEDDDD-------DDEEEEEEDDDDEDDHDDEEEEEEEEEEEEEEEPV 200
Query: 78 RDS 80
+++
Sbjct: 201 KEA 203
Score = 45 (20.9 bits), Expect = 2.3e-10, Sum P(4) = 2.3e-10
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
E E E+E + V+ ++ DE ED DDD + DE + +
Sbjct: 71 EEDEDDSEEEDDEDEPAVRKAAAAFG-AAPATDDEDDEDDDDDDDEEEEEEEEDEDDSEE 129
Query: 74 RRKE 77
E
Sbjct: 130 EPME 133
Score = 40 (19.1 bits), Expect = 7.2e-10, Sum P(4) = 7.2e-10
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVE 51
D D+++ E+ E E +E+E + ++ + +++ +KVE
Sbjct: 177 DEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 226
Score = 39 (18.8 bits), Expect = 9.0e-10, Sum P(4) = 9.0e-10
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYD 54
D +E E E+ E EP KE K + ++ K + E ++
Sbjct: 183 DEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFN 235
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 184 (69.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 46/171 (26%), Positives = 81/171 (47%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T+FA + + DV FF AG+V DVR +R+ +G G+VEF A+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
G+PLLG+ + + ++ + ++++V +++ED
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 377 ----LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG 422
LR+ F G ++ V +P+D +TG+ KG +++F+ E AL LNG
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKALELNG 465
Score = 104 (41.7 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ L+ NL FN+ + F+ G V V+ + + G +GFG V+FA E+A+ AL
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 420 LNGQLEIVGRAIKVSAVTDQ 439
+G+ ++GR I++ ++
Sbjct: 357 FHGR-PLLGREIRLDIAQER 375
Score = 55 (24.4 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 17 EPAKEKETANGDGNV--KSEDRVRSRSSKCKSDEKVEDYDDDGHRSR-GS-KSRDESRNH 72
EPA +K A +G V KS+D S S SDE+V ++ GS K++ ES +
Sbjct: 101 EPAPKKAVAATNGTVAKKSKDD-SSSSDDDSSDEEVAVTKKPAAAAKNGSVKAKKESSSE 159
Query: 73 DRRKERD 79
D D
Sbjct: 160 DDSSSED 166
Score = 50 (22.7 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 20/83 (24%), Positives = 34/83 (40%)
Query: 2 DFDEYEYLEK-MVENPEPAKEKETANGDGNVKSEDRVRS--RSSKCKSDEKV--EDYDDD 56
D DE EK + PA K ++ D + + D + ++ K+D K + D+
Sbjct: 190 DSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPAQKKADTKASKKSSSDE 249
Query: 57 GHRSRGSKSRDESRNHDRRKERD 79
S +S DE ++K D
Sbjct: 250 SSESEEDESEDEEET-PKKKSSD 271
Score = 47 (21.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDES---RNHDRR 75
AK+ +++ D + SED + + K D +S DE + D +
Sbjct: 181 AKDSSSSDDDSDEDSEDEKPATKKAAPAAAKAASSSDSSDEDSDEESEDEKPAQKKADTK 240
Query: 76 KERDSS 81
+ SS
Sbjct: 241 ASKKSS 246
Score = 46 (21.3 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 574 DIKEDVEGECSKFGKLKHIFV--EKD---SAGFVYLRF-ENTQSA 612
DIK + S G++K++ V ++D S G YL F E + A
Sbjct: 416 DIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKA 460
Score = 44 (20.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 16/75 (21%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVR---SRSSKCKSDEKVEDYDDDGHRSRGSKSR 66
EK V+ P K + + + D + E++ + ++ + SDE +D D + K+
Sbjct: 51 EKAVKKV-PKKVESSDDSDSESEEEEKAKKVPAKKAASSSDESSDDSSSDDEPAP-KKAV 108
Query: 67 DESRNHDRRKERDSS 81
+ +K +D S
Sbjct: 109 AATNGTVAKKSKDDS 123
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 194 (73.4 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 53/159 (33%), Positives = 82/159 (51%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D+ + E FSR GK V+++MD R SKG G+V F A+A ++G+ + G+ V
Sbjct: 203 DDNRLREIFSRFGKTLSVKVMMDHTGR-SKGFGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K L Q LYV NL + +++LR+ F P+GT
Sbjct: 262 YV--GRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E GH KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 167 (63.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
VF + D + +Y+ FS G + +++ D N S+G G+V F + AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIQTM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGHFKSRKE-----------REAEFGARAMEFTNVYIKNFGDDMDDNRL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAIKV 433
R++F FG V++ +D TG KGFGFV F + E+A+ A+ ++NG+ EI GR + V
Sbjct: 208 REIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGK-EINGRMVYV 263
Score = 38 (18.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
E + E S +G + V + S GF ++ F + + A A ++GR
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 166 (63.5 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 403 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTEADAEK 457
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ + + + EK Q + L + NL ++
Sbjct: 458 TLEEKQGTEIDGRSISLYYT-GEKGQNQDFRGGKNSTWSGES------KTLVLSNLAYSA 510
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 511 TEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 567
Query: 433 V 433
+
Sbjct: 568 L 568
Score = 110 (43.8 bits), Expect = 6.3e-06, Sum P(3) = 6.3e-06
Identities = 31/126 (24%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+F+ + +L+ + +
Sbjct: 284 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDV 343
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 344 FAKNDLAVVDV-RIGVSRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 401
Query: 444 DLGANT 449
D A T
Sbjct: 402 DRDART 407
Score = 105 (42.0 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA L
Sbjct: 406 RTLLAKNLPYKVTQDELKEVFEDAVEIRLVS----KDGKSKGIAYIEFKTEADAEKTLEE 461
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 462 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNST 493
Score = 60 (26.2 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 19/82 (23%), Positives = 34/82 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKS----EDRVRSRSSKCKSDEKVEDYDDDG 57
D +E + E+ PAK K+ VK+ ED + + DE+ +D D+D
Sbjct: 202 DEEEEDDSEEEAMETVPAKGKKAPAKAVPVKAKSTAEDEDEEEDEEDEEDEEDDDEDEDE 261
Query: 58 HRSRGSKSRDESRNHDRRKERD 79
+ +E + D +E +
Sbjct: 262 EEDEEEEEDEEDEDEDEEEEEE 283
Score = 56 (24.8 bits), Expect = 4.4e-12, Sum P(3) = 4.4e-12
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
PS+ L +K + + ET EE +KE +G I +++ S GF ++ F
Sbjct: 583 PSKTLFVKGLSE---ETTEE---TLKESFDGSIRA-----RIVTDRETGSSKGFGFVDFN 631
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
+ + A AA+ A+ G +T + P+
Sbjct: 632 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 661
Score = 56 (24.8 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D DE E E+ ++ E + ET G K+ + +K ++++ E+ D++
Sbjct: 195 DEDEDEDDEEEEDDSEE-EAMETVPAKGK-KAPAKAVPVKAKSTAEDEDEEEDEEDEEDE 252
Query: 62 GSKSRDESRNHDRRKERD 79
DE D +E D
Sbjct: 253 EDDDEDEDEEEDEEEEED 270
Score = 54 (24.1 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRS---RGSKSRDESRNHDRR 75
A K NG N K ED + DE+ E+ D+D +G+ + + D
Sbjct: 129 APAKGAKNGK-NAKKEDSDEEDEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDEE 187
Query: 76 KERD 79
+E D
Sbjct: 188 EEED 191
Score = 52 (23.4 bits), Expect = 2.9e-11, Sum P(3) = 2.9e-11
Identities = 15/68 (22%), Positives = 24/68 (35%)
Query: 11 KMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESR 70
K E +E E D ED + + DE+ ED D++ K R
Sbjct: 234 KSTAEDEDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKR 293
Query: 71 NHDRRKER 78
+ K++
Sbjct: 294 KKEMAKQK 301
Score = 48 (22.0 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
S+ GYV+F + A+ L+G + G + + KP
Sbjct: 359 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 394
Score = 44 (20.5 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
PAK +G + + K ++ E+ +DD + DE
Sbjct: 114 PAKALVATSGKKGAAAPAKGAKNGKNAKKEDSDEEDEDDSEEDEEDEEEDE 164
Score = 42 (19.8 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
D DE E + E+ E +E E VK + +S + +E+ ED D+D
Sbjct: 144 DSDE-EDEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDEDEDED 197
Score = 39 (18.8 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDES 69
E+ ++ E +E E + D + + + ++ SD++ E+ D+D DE
Sbjct: 147 EEDEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDEEEEEDED---------EDED 197
Query: 70 RNHDRRKERDSS 81
+ D +E D S
Sbjct: 198 EDEDDEEEEDDS 209
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 166 (63.5 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 395 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTEADAEK 449
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
G + G+ + + + EK Q + L + NL ++
Sbjct: 450 TFEEKQGTEIDGRSISLYYT-GEKGQSQDYRGGKNSTWSGES------KTLVLSNLSYSA 502
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 503 TEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 559
Query: 433 V 433
+
Sbjct: 560 L 560
Score = 108 (43.1 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 31/126 (24%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+F+ + +L+ + +
Sbjct: 276 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDL 335
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 336 FAKNDLAVVDV-RIGVSRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 393
Query: 444 DLGANT 449
D A T
Sbjct: 394 DRDART 399
Score = 101 (40.6 bits), Expect = 7.3e-06, Sum P(4) = 7.3e-06
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA
Sbjct: 398 RTLLAKNLPYKVTQDELKEVFEDAVEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEE 453
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 454 KQGTEIDGRSISLYYTGEKGQSQDYRGGKNST 485
Score = 60 (26.2 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDD-DGHR 59
D DE + E ++ E A E A G VK+ V+++S+ DE+ +D D+ D
Sbjct: 195 DDDEEDEDEDEDDSEEEAMETTPAKGKKAPVKAVP-VKAKSTAEDEDEEEDDEDEEDDDE 253
Query: 60 SRGSKSRDESRNHDRRKERD 79
+ DE + + +E +
Sbjct: 254 EEEDEDDDEEEDEEEEEEEE 273
Score = 54 (24.1 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE +G S ++ S GF ++ F + +
Sbjct: 575 PSKTLFVKGLSE---DTTEE---TLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEE 626
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 627 DAKAAKEAMEDGEIDGNKVTLDWAKPK 653
Score = 54 (24.1 bits), Expect = 2.7e-11, Sum P(3) = 2.7e-11
Identities = 20/80 (25%), Positives = 33/80 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKS----EDRVRSRSSKCKSDEKVEDYDDDG 57
D DE + E+ +E PAK K+ VK+ ED + + D+ E+ D+D
Sbjct: 202 DEDEDDSEEEAMETT-PAKGKKAPVKAVPVKAKSTAEDEDEEEDDEDEEDDDEEEEDEDD 260
Query: 58 HRSRGSKSRDESRNHDRRKE 77
+ +E + KE
Sbjct: 261 DEEEDEEEEEEEEEEEPVKE 280
Score = 48 (22.0 bits), Expect = 7.3e-06, Sum P(4) = 7.3e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
S+ GYV+F + A+ L+G + G + + KP
Sbjct: 351 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 386
Score = 43 (20.2 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKS-DEKVEDYDDD 56
PAK + NG N K ED + DE+ ED D+D
Sbjct: 130 PAKGAK--NGK-NAKKEDSDEEDDDDSEEEDEEDEDEDED 166
Score = 43 (20.2 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 14 ENPEPAKEKETANGDGNVKS-EDRV-RSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRN 71
E+ + ++E++ + D + E V ++ ++ SDE+ +D +DD DE +
Sbjct: 148 EDDDDSEEEDEEDEDEDEDEFEPTVMKAAAAAPASDEEEDDEEDD---DEDDDEEDEDED 204
Query: 72 HDRRKE 77
D +E
Sbjct: 205 EDDSEE 210
Score = 39 (18.8 bits), Expect = 8.9e-10, Sum P(3) = 8.9e-10
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYD 54
D +E E E+ E EP KE K + ++ K ++ E ++
Sbjct: 261 DEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFN 313
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 16/81 (19%), Positives = 34/81 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEK-VEDYDDDGHRS 60
D DE+E PA ++E + + + + +D + S+E+ +E G ++
Sbjct: 164 DEDEFEPTVMKAAAAAPASDEEEDDEEDDDEDDDEEDEDEDEDDSEEEAMETTPAKGKKA 223
Query: 61 --RGSKSRDESRNHDRRKERD 79
+ + +S D +E D
Sbjct: 224 PVKAVPVKAKSTAEDEDEEED 244
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 170 (64.9 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 49/173 (28%), Positives = 89/173 (51%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
++ + + DE+ + + FS+ GK+ V+++ D +S S+G G+V F A+ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 318 SGQPLLGQPVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G+ + G+ + V A+K + Q LYV NL ++ +++
Sbjct: 252 NGREVSGRLLYV--GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
LR+ F P+G + ++ + E GH KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 310 LRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 151 (58.2 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 30/72 (41%), Positives = 50/72 (69%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLN 421
+YV NLH ++ E +L+ +F FG + V++ D++GH +GFGFV F + E+A+ A+ N+N
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 422 GQLEIVGRAIKV 433
G+ E+ GR + V
Sbjct: 253 GR-EVSGRLLYV 263
Score = 93 (37.8 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG + ++ DE G +GFGFV F E A+NA++ +N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGS-RGFGFVHFETHEAAQNAISTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 90 (36.7 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D +RRS G Y+ F A+ ++ + + GQP+
Sbjct: 24 EAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIR 83
Query: 329 VKPSEAEKNL 338
+ S+ + L
Sbjct: 84 IMWSQRDPGL 93
Score = 65 (27.9 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 573 MDIKED-VEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
+D+ E ++ S+FGK+ + V +D S GF ++ FE + A A ++GR +G+
Sbjct: 200 VDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGR 259
Query: 628 MI 629
++
Sbjct: 260 LL 261
Score = 38 (18.4 bits), Expect = 6.7e-12, Sum P(3) = 6.7e-12
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
E + E S +G + V + S GF ++ F + + A A ++GR
Sbjct: 308 EKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 165 (63.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 400 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTEADAEK 454
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ + + + EK Q + L + NL ++
Sbjct: 455 TLEEKQGTEIDGRSISLYYT-GEKGQSQDHRGGKNSTWSGES------KTLVLSNLSYSA 507
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 508 TEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 564
Query: 433 V 433
+
Sbjct: 565 L 565
Score = 112 (44.5 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 32/126 (25%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+FN + +L+ + +
Sbjct: 281 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDL 340
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 341 FAKNDLAVVDV-RIGVSRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 398
Query: 444 DLGANT 449
D A T
Sbjct: 399 DRDART 404
Score = 103 (41.3 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA L
Sbjct: 403 RTLLAKNLPYKVTQDELKEVFEDAVEIRLVS----KDGKSKGIAYIEFKTEADAEKTLEE 458
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 459 KQGTEIDGRSISLYYTGEKGQSQDHRGGKNST 490
Score = 60 (26.2 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 19/80 (23%), Positives = 33/80 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEK--ETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHR 59
D +E E E+ E+ + ++E+ E G V ++ DE ED DDD
Sbjct: 193 DDEEEEEDEEDEEDEDDSEEEPMEIVPAKGKKAPVKAVPVKAKSTAEDEDEEDDDDDDDE 252
Query: 60 SRGSKSRDESRNHDRRKERD 79
+ D+ + D +E +
Sbjct: 253 EEEEEDDDDEDDDDEEEEEE 272
Score = 53 (23.7 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
PS+ L +K + + +T EE +KE +G I +++ S GF ++ F
Sbjct: 580 PSKTLFVKGLSE---DTTEE---TLKESFDGSIRA-----RIVTDRETGSSKGFGFVDFN 628
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
+ + A AA+ A+ G +T + P+
Sbjct: 629 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 658
Score = 53 (23.7 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 18/73 (24%), Positives = 26/73 (35%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSK-----CKSDEKVEDYDDDGHRSRGSK 64
+K + E + E + D + E VR ++ DE ED DDD
Sbjct: 141 KKEDSDEEDEDDSEEEDDDDEEEDEPAVRKAAAAFGAAPATDDEDDEDDDDDDDEEEEED 200
Query: 65 SRDESRNHDRRKE 77
DE D +E
Sbjct: 201 EEDEEDEDDSEEE 213
Score = 48 (22.0 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
S+ GYV+F + A+ L+G + G + + KP
Sbjct: 356 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 391
Score = 47 (21.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P K K TA + +D DE+ E+ DDD + +E + +E
Sbjct: 231 PVKAKSTAEDEDEEDDDD---------DDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEE 281
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYD 54
D +E E E+ E EP KE K + ++ K + E ++
Sbjct: 266 DEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFN 318
Score = 37 (18.1 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 22 KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
K NG N K ED S + D+ E+ DDD
Sbjct: 132 KGAKNGK-NAKKED-----SDEEDEDDSEEEDDDD 160
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 168 (64.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 390 RDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEFKTEADAEK 444
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
G + G+ + + + EK Q + L + NL ++
Sbjct: 445 TFEEKQGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGES------KTLVLSNLSYSA 497
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 498 TEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 554
Query: 433 V 433
+
Sbjct: 555 L 555
Score = 110 (43.8 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 31/126 (24%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+FN + +L+ + +
Sbjct: 271 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV 330
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 331 FAKNDLAVVDV-RIGMTRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 388
Query: 444 DLGANT 449
+ A T
Sbjct: 389 ERDART 394
Score = 103 (41.3 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA
Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEE 448
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 449 KQGTEIDGRSISLYYTGEKGQNQDYRGGKNST 480
Score = 55 (24.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D DE + E+ PAK K+ A VK+++ + D++ ED DDD
Sbjct: 199 DDDEEDDSEEEAMETTPAKGKKAAKVVP-VKAKNVAEDEDEE--EDDEDEDDDDDEDDED 255
Query: 62 GSKSRDESRNHDRRKE 77
DE + +E
Sbjct: 256 DDDEDDEEEEEEEEEE 271
Score = 54 (24.1 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE +G S ++ S GF ++ F + +
Sbjct: 570 PSKTLFVKGLSE---DTTEE---TLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEE 621
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 622 DAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 51 (23.0 bits), Expect = 3.2e-11, Sum P(3) = 3.2e-11
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
DE + ++ ++ E A E A G K V++++ DE+ +D D+D
Sbjct: 195 DEDDDDDEEDDSEEEAMETTPAKGKKAAKVVP-VKAKNVAEDEDEEEDDEDEDDDDDEDD 253
Query: 64 KSRDESRNHDRRKERD 79
+ D+ + + +E +
Sbjct: 254 EDDDDEDDEEEEEEEE 269
Score = 49 (22.3 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 266 LKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 325
LK DV+ A V DVR+ M R GYV+F + A+ L+G + G
Sbjct: 323 LKTGISDVFAKNDLA--VVDVRIGMTRK------FGYVDFESAEDLEKALELTGLKVFGN 374
Query: 326 PVMV-KP 331
+ + KP
Sbjct: 375 EIKLEKP 381
Score = 45 (20.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
PAK + NG N K ED + DE+ +D D+D
Sbjct: 130 PAKGAK--NGK-NAKKEDSDEEEDDDSEEDEE-DDEDED 164
Score = 39 (18.8 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKS----DEKVEDYDDDGHRSRGSKSRDES 69
E + ++E E + D + + ED + + K + E +D DD+ D+S
Sbjct: 148 EEDDDSEEDEEDDEDED-EDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDS 206
Score = 38 (18.4 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVE 51
D DE + E+ E EP KE G K E + + + K +KVE
Sbjct: 256 DDDEDDEEEEEEEEEEPVKE-----APGKRKKEMAKQKAAPEAKK-QKVE 299
Score = 38 (18.4 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRV-RSRSSKCKSDEKVEDYDDD 56
D +E + E+ E+ E E E +K+ S + DE ED DDD
Sbjct: 146 DEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDD 201
Score = 37 (18.1 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
D DE E + E E E E + D ++ + ++ DE ED +DD
Sbjct: 144 DSDEEE--DDDSEEDEEDDEDEDEDED-EIEPAAMKAAAAAPASEDEDDEDDEDD 195
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 168 (64.2 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 391 RDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEFKTEADAEK 445
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
G + G+ + + + EK Q + L + NL ++
Sbjct: 446 TFEEKQGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGES------KTLVLSNLSYSA 498
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 499 TEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 555
Query: 433 V 433
+
Sbjct: 556 L 556
Score = 110 (43.8 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 31/126 (24%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+FN + +L+ + +
Sbjct: 272 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV 331
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 332 FAKNDLAVVDV-RIGMTRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 389
Query: 444 DLGANT 449
+ A T
Sbjct: 390 ERDART 395
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA
Sbjct: 394 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEE 449
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 450 KQGTEIDGRSISLYYTGEKGQNQDYRGGKNST 481
Score = 55 (24.4 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D DE + E+ PAK K+ A VK+++ + + DE +D DD+
Sbjct: 200 DDDEEDDSEEEAMETTPAKGKKAAKVVP-VKAKNVAEDEDEE-EDDEDEDDDDDEDDEDE 257
Query: 62 GSKSRDESRNHDRRK 76
DE + +
Sbjct: 258 DDDDEDEEEEEEEEE 272
Score = 54 (24.1 bits), Expect = 1.3e-11, Sum P(3) = 1.3e-11
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE +G S ++ S GF ++ F + +
Sbjct: 571 PSKTLFVKGLSE---DTTEE---TLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEE 622
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 623 DAKAAKEAMEDGEIDGNKVTLDWAKPK 649
Score = 50 (22.7 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
++ E A E A G K V++++ DE+ +D D+D + D+ +
Sbjct: 206 DSEEEAMETTPAKGKKAAKVVP-VKAKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDE 264
Query: 74 RRKERD 79
+E +
Sbjct: 265 EEEEEE 270
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 266 LKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 325
LK DV+ A V DVR+ M R GYV+F + A+ L+G + G
Sbjct: 324 LKTGISDVFAKNDLA--VVDVRIGMTRK------FGYVDFESAEDLEKALELTGLKVFGN 375
Query: 326 PVMV-KP 331
+ + KP
Sbjct: 376 EIKLEKP 382
Score = 43 (20.2 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSD-EKVEDYDDD 56
PAK + NG N K ED + D E ED D+D
Sbjct: 130 PAKGAK--NGK-NAKKEDSDEEEEDDSEEDDEDDEDEDED 166
Score = 41 (19.5 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
E E E++ + + + ED + K + + +DD D+ D
Sbjct: 147 EEEEDDSEEDDEDDEDEDEDEDEIEPAVMKAAAAAPASEDEDDEDDEDDEDEDDDDEEDD 206
Query: 74 RRKE 77
+E
Sbjct: 207 SEEE 210
Score = 37 (18.1 bits), Expect = 8.3e-10, Sum P(3) = 8.3e-10
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D +E + E+ E+ E E E +K+ + +S+ + DE ED +D+
Sbjct: 146 DEEEEDDSEEDDEDDEDEDEDEDEIEPAVMKAA--AAAPASEDEDDEDDEDDEDEDDDDE 203
Query: 62 GSKSRDES 69
S +E+
Sbjct: 204 EDDSEEEA 211
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 173 (66.0 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 50/173 (28%), Positives = 89/173 (51%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
++ + + DER + + FS+ GK+ V+++ D +S S+G G+V F A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 318 SGQPLLGQPVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G+ + G+ + V A+K + Q LYV NL ++ +++
Sbjct: 252 NGKEVSGRLLYV--GRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
LR+ F P+G + ++ + E GH KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 310 LRKEFAPYGMITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 146 (56.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLN 421
+YV NLH ++ E L+ +F FG + V++ D++GH +GFGFV F + EDA+ A+ ++N
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 422 GQLEIVGRAIKV 433
G+ E+ GR + V
Sbjct: 253 GK-EVSGRLLYV 263
Score = 99 (39.9 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-L 420
LYVG+LH ++TE L + F P G + +++ D T G+ ++ F + DA AL+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDLG 446
N ++ I G+ I++ GL+ G
Sbjct: 73 NFEV-IKGQPIRIMWSQRDPGLRKSG 97
Score = 90 (36.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D +RRS G Y+ F A+ ++ + + GQP+
Sbjct: 24 EAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIR 83
Query: 329 VKPSEAEKNL 338
+ S+ + L
Sbjct: 84 IMWSQRDPGL 93
Score = 88 (36.0 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG + ++ D+ G +GFGFV F E A+NA+ +N
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQNAIRTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 64 (27.6 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 578 DVEGEC-----SKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628
DV+ C S+FGK+ + V +D S GF ++ FE + A A ++G+ +G++
Sbjct: 201 DVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRL 260
Query: 629 I 629
+
Sbjct: 261 L 261
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 168 (64.2 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 49/181 (27%), Positives = 87/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 392 RDARTLLAKNLPYKVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEFKTEADAEK 446
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
G + G+ + + + EK Q + L + NL ++
Sbjct: 447 TFEEKQGTEIDGRSISLYYT-GEKGQNQDYRGGKNSTWSGES------KTLVLSNLSYSA 499
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 500 TEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 556
Query: 433 V 433
+
Sbjct: 557 L 557
Score = 110 (43.8 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 31/126 (24%), Positives = 54/126 (42%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQ-VFEP 383
+PV P + +K + + L+VGNL+FN + +L+ + +
Sbjct: 273 EPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDV 332
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
F +L + + G + FG+V F ED AL L G L++ G IK+ + +
Sbjct: 333 FAKNDLAVVDV-RIGMTRKFGYVDFESAEDLEKALELTG-LKVFGNEIKLEKPKGKDSKK 390
Query: 444 DLGANT 449
+ A T
Sbjct: 391 ERDART 396
Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA
Sbjct: 395 RTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEE 450
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 451 KQGTEIDGRSISLYYTGEKGQNQDYRGGKNST 482
Score = 54 (24.1 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGS 63
DE E ++ ++ E A E A G K V++++ DE+ +D D+D
Sbjct: 195 DEDEDDDEEDDSEEEAMETTPAKGKKAAKVVP-VKAKNVAEDEDEEEDDEDEDDDDDDDD 253
Query: 64 KSRDESRNHDRRKERD 79
D+ D +E +
Sbjct: 254 DDEDDEDEDDEEEEEE 269
Score = 54 (24.1 bits), Expect = 1.6e-11, Sum P(3) = 1.6e-11
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE +G S ++ S GF ++ F + +
Sbjct: 572 PSKTLFVKGLSE---DTTEE---TLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEE 623
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 624 DAKAAKEAMEDGEIDGNKVTLDWAKPK 650
Score = 53 (23.7 bits), Expect = 2.0e-11, Sum P(3) = 2.0e-11
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D DE + E+ PAK K+ A VK+++ + + DE +D DDD
Sbjct: 199 DDDEEDDSEEEAMETTPAKGKKAAKVVP-VKAKNVAEDEDEE-EDDEDEDDDDDDDDDDE 256
Query: 62 GSKSRDESRNHDRRKERD 79
+ DE + +E +
Sbjct: 257 DDE--DEDDEEEEEEEEE 272
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 21/67 (31%), Positives = 30/67 (44%)
Query: 266 LKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 325
LK DV+ A V DVR+ M R GYV+F + A+ L+G + G
Sbjct: 325 LKTGISDVFAKNDLA--VVDVRIGMTRK------FGYVDFESAEDLEKALELTGLKVFGN 376
Query: 326 PVMV-KP 331
+ + KP
Sbjct: 377 EIKLEKP 383
Score = 45 (20.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
PAK + NG N K ED S + + D+ ED DDD
Sbjct: 130 PAKGAK--NGK-NAKKED-----SDEEEEDDSEEDEDDD 160
Score = 45 (20.9 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 11/64 (17%), Positives = 24/64 (37%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
E E E++ + + + ED + + K + + D+D + D+ D
Sbjct: 147 EEEEDDSEEDEDDDEDEDEDEDEIEPAAMKAAAAAPASE-DEDDEDDEDDEDEDDDEEDD 205
Query: 74 RRKE 77
+E
Sbjct: 206 SEEE 209
Score = 38 (18.4 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVE 51
D DE + E+ E EP KE G K E + + + K +KVE
Sbjct: 258 DEDEDDEEEEEEEEEEPVKE-----APGKRKKEMAKQKAAPEAKK-QKVE 301
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 133 (51.9 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 43/180 (23%), Positives = 83/180 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ VP A L+
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEY----EVPEAAQLA 143
Query: 319 GQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLR 378
+ + VM+ + R+YV ++H ++++D ++
Sbjct: 144 LEQM--NSVMLGGRNIKVGR-PGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIK 200
Query: 379 QVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLE---DARNALNL---NGQLEIVGRAI 431
VFE FG ++ L + T G KGFGF+++ + + DA +++NL GQ VG+A+
Sbjct: 201 SVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKAV 260
Score = 129 (50.5 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 147 MNSVMLGGRNIKV 159
Score = 103 (41.3 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV------EKDSAGFV--- 602
S ++L+NM P E+ D D++ +V EC K+G + + + E+D A +
Sbjct: 418 STVMVLRNMVGP-----EDIDDDLEGEVMEECGKYGAVNRVIIYQERQGEEDDAEIIVKI 472
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITA 631
++ F + A +AL+ RWFAG+ + A
Sbjct: 473 FVEFSDAGEMNKAIQALNNRWFAGRKVVA 501
Score = 50 (22.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + ++ GF ++ +E QS+ A +++ G++
Sbjct: 197 DDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRV 256
Query: 626 GKMIT 630
GK +T
Sbjct: 257 GKAVT 261
Score = 37 (18.1 bits), Expect = 1.9e-11, Sum P(3) = 1.9e-11
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 515 LVPPLVQGTVPTHPGQLGTALQVPTAS 541
+ PP+ T PT PG L A V A+
Sbjct: 260 VTPPMPLLT-PTTPGGLPPAAAVAAAA 285
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 108 (43.1 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 32/113 (28%), Positives = 59/113 (52%)
Query: 540 ASVPIFDTIGVPSECLLLKNMF-DPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 597
A + + G +E L L NM + + + +E++ +I EDV ECSK+G ++ + + +
Sbjct: 385 AGIDLSQGAGRATEILCLMNMVTEDELKADDEYE-EILEDVRDECSKYGIVRSLEIPRPY 443
Query: 598 ------SAGFVYLRFENTQSAFAAQRALHGRWFAGK-MITATFMVPQTYEAKF 643
G V++ F +T AQ AL GR FA + ++T+ + V + + +F
Sbjct: 444 EDHPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
Score = 101 (40.6 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 29/128 (22%), Positives = 55/128 (42%)
Query: 298 KGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXXXX 356
K ++EF + +A G +GQ + V+ P + + +
Sbjct: 230 KNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPS---QNTFDMNSRMPVSTIV 286
Query: 357 XXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFA--RLEDA 414
++++G L +TEDQ++++ FG ++ L +D G+ KG+ F ++ L D
Sbjct: 287 VDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQ 346
Query: 415 RNALNLNG 422
A LNG
Sbjct: 347 AIA-GLNG 353
Score = 83 (34.3 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 361 RRLYVGNLHFNMTEDQLRQVF-EPFGTVELVQLPLDETGHC-----KGFGFVQFARLEDA 414
RRLYVGN+ F E+ + F + L Q P + C K F F++F +++
Sbjct: 184 RRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDET 243
Query: 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQD 444
+ +G + +G+ +KV D Q+
Sbjct: 244 TAGMAFDG-INFMGQQLKVRRPRDYQPSQN 272
Score = 65 (27.9 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 13 VENPEPAKEKETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHR--SRGSKSRDES 69
+EN E K T G G ++ + R RS S+ + + D G R G RD S
Sbjct: 37 LENEENLKSS-TGGGGGEDDNDRKKRKRSRSRDRDTRRRSRSRDRGERRGGGGGGDRDRS 95
Query: 70 RNHDRRK 76
R+ +RR+
Sbjct: 96 RSRERRR 102
Score = 46 (21.3 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 51 EDYDDDGHRSRGSKSRD-ESRNHDRRKER 78
ED D+D + + S+SRD ++R R ++R
Sbjct: 53 ED-DNDRKKRKRSRSRDRDTRRRSRSRDR 80
Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 54 DDDGHRSRGSKSRDESRNHDRRKERDS 80
+DD R K R SR+ DR R S
Sbjct: 53 EDDNDR----KKRKRSRSRDRDTRRRS 75
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 166 (63.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 49/181 (27%), Positives = 88/181 (48%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 44 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEFKTEADAEK 98
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ + + + EK Q + L + NL ++
Sbjct: 99 TLEEKQGTEIDGRSISLYYT-GEKGQNQDFRGGKNSTWSGES------KTLVLSNLAYSA 151
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI+
Sbjct: 152 TEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 208
Query: 433 V 433
+
Sbjct: 209 L 209
Score = 105 (42.0 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL + +T+D+L++VFE + LV + G KG +++F DA L
Sbjct: 47 RTLLAKNLPYKVTQDELKEVFEDAVEIRLVS----KDGKSKGIAYIEFKTEADAEKTLEE 102
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDL--GANTT 450
EI GR+I + ++ QD G N+T
Sbjct: 103 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNST 134
Score = 56 (24.8 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
PS+ L +K + + ET EE +KE +G I +++ S GF ++ F
Sbjct: 224 PSKTLFVKGLSE---ETTEE---TLKESFDGSIRA-----RIVTDRETGSSKGFGFVDFN 272
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
+ + A AA+ A+ G +T + P+
Sbjct: 273 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 302
Score = 45 (20.9 bits), Expect = 4.5e-05, Sum P(3) = 4.5e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 301 GYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
GYV+F + A+ L+G + G + + KP
Sbjct: 4 GYVDFESAEDLEKALELTGLKVFGNEIKLEKP 35
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 143 (55.4 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-N 419
R+YVG++ F + ED LR+ F+PFG ++ + + D TGH K F FV++ E A A +
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 420 LNGQLEIVGRAIKVSAVTDQ 439
+NGQ+ + GR +KV+++ Q
Sbjct: 163 MNGQM-LGGRNLKVNSMMFQ 181
Score = 118 (46.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 41/188 (21%), Positives = 79/188 (42%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI--A 316
++ I + E + F G ++ + + D + K +VE Y+V + +
Sbjct: 104 IYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVE-YEVPEAALLAQES 162
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
++GQ L G+ + V ++ + R+YV ++H +++E
Sbjct: 163 MNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDMVQKDAKKYFRVYVSSVHPDLSETD 222
Query: 377 LRQVFEPFGTVELVQLPLDETGHC-KGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
L+ VFE FG + QL TG +GFG+++F L A+ ++ G+ ++V
Sbjct: 223 LKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRVGK 282
Query: 435 AVTDQSGL 442
VT L
Sbjct: 283 CVTPPDAL 290
Score = 91 (37.1 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-DSAGFV--YLRFEN 608
S ++L+NM P++ +EF ++ ++ EC K+G + + + S+G V ++++ +
Sbjct: 657 SNVIVLRNMVTPQD--IDEF---LEGEIREECGKYGNVIDVVIANFASSGLVKIFVKYSD 711
Query: 609 TQSAFAAQRALHGRWFAGKMITA 631
+ A+ AL GR+F G + A
Sbjct: 712 SMQVDRAKAALDGRFFGGNTVKA 734
Score = 45 (20.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 27/88 (30%), Positives = 39/88 (44%)
Query: 572 DMDIKEDVE--GECSKFGKLKHIFVEKDSAGFVYLRFEN--TQS-AFAAQRA--LHGRWF 624
+ D+K E GE K +L + GF YL F N +QS A A L G++
Sbjct: 220 ETDLKSVFEAFGEIVKC-QLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQYL 278
Query: 625 -AGKMITA----TFMVPQTYEAKFPDSI 647
GK +T T++ P + A P S+
Sbjct: 279 RVGKCVTPPDALTYLQPASVSA-IPASV 305
Score = 37 (18.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 522 GTVPTHPGQLG---TALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDM 573
G+ P P + G A P A P + +P++ + PK E EE ++
Sbjct: 324 GSSPKTPSESGGSRAASPAPRAQSPATPSSSLPTDIENKAVISSPKKEP-EEIEV 377
>UNIPROTKB|G3V2B4 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780 EMBL:AL135998
HGNC:HGNC:20155 ChiTaRS:RBM23 ProteinModelPortal:G3V2B4 SMR:G3V2B4
Ensembl:ENST00000555722 ArrayExpress:G3V2B4 Bgee:G3V2B4
Uniprot:G3V2B4
Length = 51
Score = 160 (61.4 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 30/50 (60%), Positives = 38/50 (76%)
Query: 263 QICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
Q+ + RD+ +FFS GKVRDVR+I DRNSRRSKG+ YVEF ++ SVP
Sbjct: 2 QLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 51
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 175 (66.7 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 47/169 (27%), Positives = 87/169 (51%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
++ + + DE+ + + FSR GK+ V+++ D +S S+G G+V F A+ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 318 SGQPLLGQPVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G+ + G+ + V A+K + Q LYV NL ++ +++
Sbjct: 252 NGKEVSGRLLYV--GRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEK 309
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
LR+ F P+G + ++ + E GH KGFGFV F+ E+A A+ +NG++
Sbjct: 310 LRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 143 (55.4 bits), Expect = 6.3e-11, Sum P(3) = 6.3e-11
Identities = 29/72 (40%), Positives = 49/72 (68%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA-LNLN 421
+YV NLH ++ E L+ +F FG + V++ D++GH +GFGFV F + E+A+ A +++N
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 422 GQLEIVGRAIKV 433
G+ E+ GR + V
Sbjct: 253 GK-EVSGRLLYV 263
Score = 90 (36.7 bits), Expect = 6.3e-11, Sum P(3) = 6.3e-11
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D +RRS G Y+ F A+ ++ + + GQP+
Sbjct: 24 EAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIR 83
Query: 329 VKPSEAEKNL 338
+ S+ + L
Sbjct: 84 IMWSQRDPGL 93
Score = 83 (34.3 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG + ++ D+ G +GFGFV F E A+ A+ +N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGS-RGFGFVHFETHEAAQQAITTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 63 (27.2 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
D+D ++ ++ S+FGK+ + V +D S GF ++ F+ + A A ++G+ +G+
Sbjct: 201 DVD-EQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGR 259
Query: 628 MI 629
++
Sbjct: 260 LL 261
Score = 38 (18.4 bits), Expect = 6.3e-11, Sum P(3) = 6.3e-11
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
E + E S +G + V + S GF ++ F + + A A ++GR
Sbjct: 308 EKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 183 (69.5 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 50/159 (31%), Positives = 83/159 (52%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D++ + E FS G V+++MD NS RS+G G+V + + A+ ++G+ + G+ V
Sbjct: 203 DDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +D+LR+ F P+GT
Sbjct: 262 YV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E GH KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSTKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 122 (48.0 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+Y+ N +M + +L+++F FG V++ +D +G +GFGFV + E+A+ A+ +N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 422 GQLEIVGRAIKV 433
G+ E+ GR + V
Sbjct: 253 GK-EVNGRMVYV 263
Score = 87 (35.7 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D +RRS G Y+ F A+ ++ + + G+P+
Sbjct: 24 EAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIR 83
Query: 329 VKPSEAEKNL 338
+ S+ + L
Sbjct: 84 IMWSQRDPGL 93
Score = 80 (33.2 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG + ++ DE G +G+GFV F E A A+ +N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 52 (23.4 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD K ++ S FG + V D S GF ++ + N + A A ++G+ G+
Sbjct: 201 DMDDKR-LKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGR 259
Query: 628 MI 629
M+
Sbjct: 260 MV 261
Score = 44 (20.5 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 559 NMFDPKNETYEEFDMDIKED-VEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFA 614
N + N + D I +D + E S +G + V + S GF ++ F + + A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATK 348
Query: 615 AQRALHGR 622
A ++GR
Sbjct: 349 AVTEMNGR 356
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 137 (53.3 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
+ L + NL ++ TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN
Sbjct: 406 KTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 462
Query: 421 NGQLEIVGRAIKV 433
+ EI GRAI++
Sbjct: 463 CNKREIEGRAIRL 475
Score = 105 (42.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 363 LYVGNLHFNMTEDQLRQ-VFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421
L+VGNL+FN + +L+ + + F +L + + G + FG+V F ED AL L
Sbjct: 236 LFVGNLNFNKSAPELKTGISDLFAKNDLAVVDV-RIGVSRKFGYVDFESAEDLEKALELT 294
Query: 422 GQLEIVGRAIKVSAVTDQSGLQDLGANT 449
G L++ G IK+ + +D A T
Sbjct: 295 G-LKVFGNEIKLEKPKGKDSKKDRDART 321
Score = 91 (37.1 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ L+V L + TE+ L++ F+ G++ ++ D ETG KGFGFV F EDA+ A
Sbjct: 492 KTLFVKGLSEDTTEETLKESFD--GSIR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 548
Query: 420 LNGQLEIVGRAI 431
EI G +
Sbjct: 549 AMEDGEIDGNKV 560
Score = 67 (28.6 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
RD RT+ A + K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 317 RDARTLLAKNLPYKVTQDELKEVFEDAVEIR----LVSKDGK-SKGIAYIEF 363
Score = 53 (23.7 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
PS+ L +K + + +T EE +KE +G I +++ S GF ++ F
Sbjct: 490 PSKTLFVKGLSE---DTTEE---TLKESFDGSIRA-----RIVTDRETGSSKGFGFVDFN 538
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
+ + A AA+ A+ G +T + P+
Sbjct: 539 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 568
Score = 50 (22.7 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
D DE E E+ E+ + E G V ++ DE ED DDD
Sbjct: 142 DDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDD 196
Score = 48 (22.0 bits), Expect = 5.5e-09, Sum P(4) = 5.5e-09
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KP 331
S+ GYV+F + A+ L+G + G + + KP
Sbjct: 273 SRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 308
Score = 47 (21.6 bits), Expect = 1.5e-10, Sum P(4) = 1.5e-10
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D +E E E ++ E E A G V+++S+ DE+ +D DD+
Sbjct: 144 DEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTAEDEDEEDDDDDDEEEEEA 203
Query: 62 GSKSRDE 68
K + E
Sbjct: 204 PGKRKKE 210
Score = 44 (20.5 bits), Expect = 2.9e-10, Sum P(4) = 2.9e-10
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 47 DEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
DE ED DDD + DE + + E
Sbjct: 133 DEDDEDDDDDDDEEEEEEEEDEDDSEEEPME 163
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 156 (60.0 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++R ++ ++ R SKG+ Y+EF
Sbjct: 248 RAARTLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGR-SKGIAYIEFKSEADAEK 302
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ V + + EK Q + L + NL ++
Sbjct: 303 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGES-------KTLVLSNLSYSA 354
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P + G KG+ F++FA EDA+ ALN ++EI GR I+
Sbjct: 355 TEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR 411
Query: 433 V 433
+
Sbjct: 412 L 412
Score = 115 (45.5 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL FN+TED+L++VFE + LV + G KG +++F DA L
Sbjct: 251 RTLLAKNLSFNITEDELKEVFEDAVEIRLVS----QDGRSKGIAYIEFKSEADAEKNLEE 306
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQD-LGANTT 450
EI GR++ + ++ Q+ G N+T
Sbjct: 307 KQGAEIDGRSVSLYYTGEKGQRQERTGKNST 337
Score = 97 (39.2 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ L+V L + TE+ L++ FE G+V ++ D ETG KGFGFV F EDA+ A
Sbjct: 429 KTLFVKGLSEDTTEETLKESFE--GSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKTAKE 485
Query: 420 LNGQLEIVGRAI 431
EI G +
Sbjct: 486 AMEDGEIDGNKV 497
Score = 56 (24.8 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 18/67 (26%), Positives = 29/67 (43%)
Query: 16 PEPAKEKETANGDGNVKSEDRVRSRSSKCKS--DEKVEDYDDDGHRSRGSKSRDESRNHD 73
P P K+ NG N K EDR + + DE ED +D+ K+ R +
Sbjct: 89 PTPGKK----NGK-NAKKEDRDEDEDEEDEDEEDEDEEDDEDEEEEEEPVKAAPGKRKKE 143
Query: 74 RRKERDS 80
K++++
Sbjct: 144 MTKQKEA 150
Score = 53 (23.7 bits), Expect = 1.0e-10, Sum P(3) = 1.0e-10
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE EG S ++ S GF ++ F + +
Sbjct: 427 PSKTLFVKGLSE---DTTEE---TLKESFEG--SVRARIVTDRETGSSKGFGFVDFNSEE 478
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A A+ A+ G +T + P+
Sbjct: 479 DAKTAKEAMEDGEIDGNKVTLDWAKPK 505
Score = 49 (22.3 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 290 MDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQ 340
+D + ++ GYV+F + A+ L+G + G + + KP + V+
Sbjct: 197 VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR 248
>TAIR|locus:2206001 [details] [associations]
symbol:AT1G60900 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC018908 HSSP:P26368 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:AY140014
IPI:IPI00528167 PIR:E96634 RefSeq:NP_176287.3 UniGene:At.17780
UniGene:At.52293 ProteinModelPortal:Q8L716 SMR:Q8L716 PaxDb:Q8L716
PRIDE:Q8L716 EnsemblPlants:AT1G60900.1 GeneID:842382
KEGG:ath:AT1G60900 GeneFarm:4545 TAIR:At1g60900 InParanoid:Q8L716
OMA:TQMGGLP PhylomeDB:Q8L716 ProtClustDB:CLSN2918395
Genevestigator:Q8L716 Uniprot:Q8L716
Length = 589
Score = 100 (40.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 52/202 (25%), Positives = 80/202 (39%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRA-----GKVRDVR-LIMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FFS+ G +++ K +VE
Sbjct: 252 RHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 311
Query: 308 VMSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXX---------XXXXXXXXXXXX 357
V A+AL G L G PV V+ P++ +L
Sbjct: 312 VEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGL 371
Query: 358 XXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFV--QFARLED- 413
R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F Q + D
Sbjct: 372 EGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDI 431
Query: 414 ---ARNALNLNGQLEIVGRAIK 432
A N + + + V RAI+
Sbjct: 432 ACAALNGIKMGDKTLTVRRAIQ 453
Score = 88 (36.0 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 30/131 (22%), Positives = 55/131 (41%)
Query: 520 VQGTVPTHPGQ---LGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIK 576
+QG + P Q L A Q +F G P++ + L + + +E +I
Sbjct: 452 IQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIM 511
Query: 577 EDVEGECSKFGKLKHIFVEKDS--------AGFVYLRFENTQSAFAAQRALHGRWFAGKM 628
ED+ E KFG L ++ + + + G V+L + + + A+ ++GR F G
Sbjct: 512 EDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQ 571
Query: 629 ITATFMVPQTY 639
+ A + Y
Sbjct: 572 VVAVYYPEDKY 582
Score = 83 (34.3 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 21 EKETANG---DGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNH-DRR 75
EK+ NG DGN K DR + R K + ++ + D D R R SK R R+H DR
Sbjct: 51 EKDNENGRDKDGN-KDRDREKDRDREKSRDRDREKSRDRDRDRER-SKDRQRDRHHRDRH 108
Query: 76 KER 78
++R
Sbjct: 109 RDR 111
Score = 79 (32.9 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 35 DRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
DR R RS + EK +D DDD HR S+ RD R+ DR +E
Sbjct: 106 DRHRDRSRE--RSEKRDDLDDDHHRR--SRDRDRRRSRDRDRE 144
Score = 75 (31.5 bits), Expect = 7.3e-10, Sum P(3) = 7.3e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 34 EDRVRSRSSKCKSDE-KVEDYDDDGHRSR-GSKSRDESRNHDRRKERD 79
ED S K D K+ + D++ R + G+K RD ++ DR K RD
Sbjct: 32 EDSKSRESHDLKKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRD 79
Score = 67 (28.6 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 22/66 (33%), Positives = 30/66 (45%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRS-SKCKS-DEKVEDYDDDGHRSRGSKSRDESRNHDR 74
E +++E + KS DR R R SK + D D D R R K D +H R
Sbjct: 69 EKDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRHRDRSRERSEKRDDLDDDHHR 128
Query: 75 R-KERD 79
R ++RD
Sbjct: 129 RSRDRD 134
Score = 59 (25.8 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 17 EPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRG-SKSRDESRNHDRR 75
E +++++ + D + +S DR R RS D +V HR R S+SR S R
Sbjct: 114 ERSEKRDDLDDDHHRRSRDRDRRRSRD--RDREVR------HRRRSRSRSRSRSERRSRS 165
Query: 76 KERDSSCH 83
+ R S H
Sbjct: 166 EHRHKSEH 173
Score = 58 (25.5 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 22 KETANGDGNVKSEDRVRSRS-SKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDR 74
+ + + D V+ R RSRS S+ + + E HRSR S+SR S++ R
Sbjct: 136 RRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSR-SRSRSRSKSKRR 188
Score = 41 (19.5 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 19 AKEKETANGDGNVKSEDRVRSRS-SKCKSDEK 49
++ + + + KSE R RSRS S+ KS +
Sbjct: 157 SRSERRSRSEHRHKSEHRSRSRSRSRSKSKRR 188
>UNIPROTKB|K7ENG2 [details] [associations]
symbol:U2AF2 "Splicing factor U2AF 65 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC008735 TIGRFAMs:TIGR01642 HGNC:HGNC:23156
Ensembl:ENST00000590551 Uniprot:K7ENG2
Length = 307
Score = 126 (49.4 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 530 QLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKL 589
Q LQVP G P+E L L NM P+ +E +I EDV ECSK+G +
Sbjct: 185 QTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLV 244
Query: 590 KHIF-------VEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAK 642
K I VE G +++ F + A + L GR FA +++ + P +Y +
Sbjct: 245 KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 304
Score = 93 (37.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 28/130 (21%), Positives = 53/130 (40%)
Query: 296 RSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXXXXXXXXXXXXX 354
+ K ++EF V A+A G GQ + ++ P + +
Sbjct: 29 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVST 88
Query: 355 XXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLED 413
+L++G L + +DQ++++ FG ++ L D TG KG+ F ++ +
Sbjct: 89 VVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 148
Query: 414 ARNAL-NLNG 422
A+ LNG
Sbjct: 149 TDQAIAGLNG 158
Score = 67 (28.6 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
++ V E + G ++ L+ D + SKG + E+ D+ AIA L+G L + +
Sbjct: 107 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 166
Query: 328 MV-KPSEAEKN 337
+V + S KN
Sbjct: 167 LVQRASVGAKN 177
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 180 (68.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 56/171 (32%), Positives = 80/171 (46%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
D + +Y+ FS G + ++ D N + SKG G+V F + + AI AL+G L GQ +
Sbjct: 138 DNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196
Query: 328 MVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV 387
V P + K LYV N++ T++Q +++F FG +
Sbjct: 197 YVAPHLSRKE-----------RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPI 245
Query: 388 ELVQLPLDETGHCKGFGFVQFARLEDARNA---LN---LNGQLEIVGRAIK 432
L D G KGFGFV + + EDA A LN LNG+ VGRA K
Sbjct: 246 VSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 296
Score = 139 (54.0 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 43/167 (25%), Positives = 76/167 (45%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DE+ E F++ G + L D + + KG G+V + A+ AL+ L G+ +
Sbjct: 232 DEQ-FQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDSELNGEKL 289
Query: 328 MVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV 387
V ++ +KN L+V NL ++ +++L + F P+GT+
Sbjct: 290 YVGRAQ-KKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTI 348
Query: 388 ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ E G KGFGFV F+ E+A A+ Q + G+ + V+
Sbjct: 349 TSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Score = 135 (52.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 47/167 (28%), Positives = 76/167 (45%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 328
E +Y+ FS G V +R+ D ++ S G YV F D + AI L+ P+ G+
Sbjct: 51 EAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCR 110
Query: 329 VKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVE 388
+ S+ + +L + +++ NLH ++ L F FG +
Sbjct: 111 IMWSQRDPSLRKKGSG-----------------NIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 389 LVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 434
++ DE G KGFGFV F A+ A++ LNG L + G+ I V+
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGML-LNGQEIYVA 199
Score = 50 (22.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 584 SKFGKLKHIFVEKDS----AGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
+KFG + +EKD+ GF ++ +E + A A AL+ G+ +
Sbjct: 240 AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL 289
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 156 (60.0 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++R ++ ++ R SKG+ Y+EF
Sbjct: 394 RAARTLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGR-SKGIAYIEFKSEADAEK 448
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ V + + EK Q + L + NL ++
Sbjct: 449 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGES-------KTLVLSNLSYSA 500
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P + G KG+ F++FA EDA+ ALN ++EI GR I+
Sbjct: 501 TEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR 557
Query: 433 V 433
+
Sbjct: 558 L 558
Score = 115 (45.5 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL FN+TED+L++VFE + LV + G KG +++F DA L
Sbjct: 397 RTLLAKNLSFNITEDELKEVFEDAVEIRLVS----QDGRSKGIAYIEFKSEADAEKNLEE 452
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQD-LGANTT 450
EI GR++ + ++ Q+ G N+T
Sbjct: 453 KQGAEIDGRSVSLYYTGEKGQRQERTGKNST 483
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLR-QVFEP 383
+PV P + +K + + L++GNL+ N + +L+ + E
Sbjct: 275 EPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL 334
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
F +L + + TG + FG+V F ED AL L G L++ G IK+
Sbjct: 335 FAKNDLAAVDV-RTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKL 382
Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE EG S ++ S GF ++ F + +
Sbjct: 573 PSKTLFVKGLSE---DTTEE---TLKESFEG--SVRARIVTDRETGSSKGFGFVDFNSEE 624
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 625 DAKAAKEAMEDGEIDGNKVTLDWAKPK 651
Score = 54 (24.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D D+ E E+ ++ E E A G K+ +V +K ++E+ ED +DD
Sbjct: 200 DDDDDEEEEEEDDSEEEVMEITPAKGK---KTPAKVVPVKAKSVAEEE-EDDEDDEDEEE 255
Query: 62 GSKSRDESRNHDRRKERD 79
DE + D +E +
Sbjct: 256 DEDEEDEEDDEDEDEEEE 273
Score = 49 (22.3 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 290 MDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQ 340
+D + ++ GYV+F + A+ L+G + G + + KP + V+
Sbjct: 343 VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR 394
Score = 44 (20.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P K K A + + ED + + DE+ ++ +D+ K+ R + K+
Sbjct: 234 PVKAKSVAEEEED--DEDDEDEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQ 291
Query: 78 RDS 80
+++
Sbjct: 292 KEA 294
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 16 PEPAKEKET--ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
P P K+ A G N K+ + S + + DE D D+D
Sbjct: 120 PTPGKKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDED 162
Score = 41 (19.5 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDD 55
+E E+ +V+ +PAK A + ED DE+ E+ DD
Sbjct: 163 EEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDD--DDEDDDDDDEEEEEEDD 212
Score = 39 (18.8 bits), Expect = 5.7e-09, Sum P(3) = 5.7e-09
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E+ E E G K+ + + + D+ ED DDD +E
Sbjct: 161 EDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDDDDEDDDDDDEEEEEEDDSEE 215
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 164 (62.8 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 47/159 (29%), Positives = 82/159 (51%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
DER + + FS+ GK V+++ D +S +SKG G+V F + A+ ++G+ + GQ +
Sbjct: 203 DER-LKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLI 260
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q +LY+ NL + +++LR F FG+
Sbjct: 261 FV--GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGS 318
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ V++ + E G KGFG + F+ EDA A+ +NG++
Sbjct: 319 ISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRI 356
Score = 159 (61.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 52/181 (28%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +YE FS GK+ +++ D + SKG +V F + + AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G+ L G V V + K+ +Y+ N +M +++L
Sbjct: 158 NGKLLKGCKVFVGRFKNRKD-----------REAELRSKASEFTNVYIKNFGGDMDDERL 206
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAI 431
+ VF +G V++ D +G KGFGFV F E A+ A+ ++NGQL VGRA
Sbjct: 207 KDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 266
Query: 432 K 432
K
Sbjct: 267 K 267
Score = 108 (43.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALN-L 420
LYVG+LH ++TED L + F G V +++ D+ T G+ +V F +L DA+ AL+ +
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 421 NGQLEIVGRAIKV 433
N + I G++I++
Sbjct: 72 NFDI-IKGKSIRL 83
Score = 67 (28.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKDSAG----FVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD E ++ SK+GK + V DS+G F ++ F++ ++A A ++GR G+
Sbjct: 200 DMD-DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 258
Query: 628 MI 629
+I
Sbjct: 259 LI 260
Score = 58 (25.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 577 EDVEGECSKFGKLKHIFV---EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630
E + E S FG + + V E S GF + F + + A A ++GR K ++
Sbjct: 307 EKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 363
Score = 57 (25.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 584 SKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAG-KMITATFMVPQTY 639
S FGK+ V D S G+ ++ F+N +A A ++G+ G K+ F +
Sbjct: 119 SAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDR 178
Query: 640 EAK 642
EA+
Sbjct: 179 EAE 181
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 156 (60.0 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++R ++ ++ R SKG+ Y+EF
Sbjct: 395 RAARTLLAKNLSFNITEDELKEVFEDAVEIR----LVSQDGR-SKGIAYIEFKSEADAEK 449
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ V + + EK Q + L + NL ++
Sbjct: 450 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGES-------KTLVLSNLSYSA 501
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P + G KG+ F++FA EDA+ ALN ++EI GR I+
Sbjct: 502 TEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR 558
Query: 433 V 433
+
Sbjct: 559 L 559
Score = 115 (45.5 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL FN+TED+L++VFE + LV + G KG +++F DA L
Sbjct: 398 RTLLAKNLSFNITEDELKEVFEDAVEIRLVS----QDGRSKGIAYIEFKSEADAEKNLEE 453
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQD-LGANTT 450
EI GR++ + ++ Q+ G N+T
Sbjct: 454 KQGAEIDGRSVSLYYTGEKGQRQERTGKNST 484
Score = 100 (40.3 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLR-QVFEP 383
+PV P + +K + + L++GNL+ N + +L+ + E
Sbjct: 276 EPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL 335
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
F +L + + TG + FG+V F ED AL L G L++ G IK+
Sbjct: 336 FAKNDLAAVDV-RTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKL 383
Score = 57 (25.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE EG S ++ S GF ++ F + +
Sbjct: 574 PSKTLFVKGLSE---DTTEE---TLKESFEG--SVRARIVTDRETGSSKGFGFVDFNSEE 625
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 626 DAKAAKEAMEDGEIDGNKVTLDWAKPK 652
Score = 54 (24.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D D+ E E+ ++ E E A G K+ +V +K ++E+ ED +DD
Sbjct: 201 DDDDDEEEEEEDDSEEEVMEITPAKGK---KTPAKVVPVKAKSVAEEE-EDDEDDEDEEE 256
Query: 62 GSKSRDESRNHDRRKERD 79
DE + D +E +
Sbjct: 257 DEDEEDEEDDEDEDEEEE 274
Score = 49 (22.3 bits), Expect = 3.5e-07, Sum P(4) = 3.5e-07
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 290 MDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQ 340
+D + ++ GYV+F + A+ L+G + G + + KP + V+
Sbjct: 344 VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR 395
Score = 44 (20.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P K K A + + ED + + DE+ ++ +D+ K+ R + K+
Sbjct: 235 PVKAKSVAEEEED--DEDDEDEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQ 292
Query: 78 RDS 80
+++
Sbjct: 293 KEA 295
Score = 43 (20.2 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDD 55
+E E+ +V+ +PAK A + ED DE+ E+ DD
Sbjct: 163 EEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDDDDEEDDD-DDDEEEEEEDD 213
Score = 42 (19.8 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 16 PEPAKEKET--ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
P P K+ A G N K+ + S + + DE D D+D
Sbjct: 120 PTPGKKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDED 162
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 158 (60.7 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 49/181 (27%), Positives = 84/181 (46%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++RL+ +SKG+ Y+EF
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVSQDG--KSKGIAYIEFKSEADAEK 445
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ V + + EK Q + L + NL ++
Sbjct: 446 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKNSTWSGES-------KTLVLSNLSYSA 497
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN ++EI GR I+
Sbjct: 498 TEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR 554
Query: 433 V 433
+
Sbjct: 555 L 555
Score = 113 (44.8 bits), Expect = 5.8e-07, Sum P(4) = 5.8e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL FN+TED+L++VFE + LV + G KG +++F DA L
Sbjct: 394 RTLLAKNLSFNITEDELKEVFEDALEIRLVS----QDGKSKGIAYIEFKSEADAEKNLEE 449
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQD-LGANTT 450
EI GR++ + ++ Q+ G N+T
Sbjct: 450 KQGAEIDGRSVSLYYTGEKGQRQERTGKNST 480
Score = 108 (43.1 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLR-QVFEP 383
+PV P + +K + + L++GNL+ N + +L+ + EP
Sbjct: 272 EPVKPAPGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEP 331
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
F +L + + TG + FG+V F ED AL L G L++ G IK+
Sbjct: 332 FAKNDLAVVDV-RTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKL 379
Score = 57 (25.1 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE EG S ++ S GF ++ F + +
Sbjct: 570 PSKTLFVKGLSE---DTTEE---TLKESFEG--SVRARIVTDRETGSSKGFGFVDFNSEE 621
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 622 DAKAAKEAMEDGEIDGNKVTLDWAKPK 648
Score = 52 (23.4 bits), Expect = 5.8e-07, Sum P(4) = 5.8e-07
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 289 IMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQ 340
++D + ++ GYV+F + A+ L+G + G + + KP + V+
Sbjct: 339 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR 391
Score = 51 (23.0 bits), Expect = 2.1e-10, Sum P(3) = 2.1e-10
Identities = 19/78 (24%), Positives = 31/78 (39%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D +E E E+ E E E+E A K + + ++ K+ E+ DDD
Sbjct: 192 DEEEDEEEEEEDEEEEDDSEEEEAMEITPAKGK-KAPAKVVPVKAKNVAEEDDDDEEEDE 250
Query: 62 GSKSRDESRNHDRRKERD 79
+ DE D +E +
Sbjct: 251 -DEEEDEEEEEDEEEEEE 267
Score = 49 (22.3 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
P K K A D + + ED + + DE+ E+ +++
Sbjct: 232 PVKAKNVAEEDDDDEEEDEDEEEDEEEEEDEEEEEEEEE 270
Score = 42 (19.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
PAK + NG N K ED D+ ED +D+
Sbjct: 129 PAKGAK--NGK-NAKKEDSDEDEDDDDDEDDSDEDEEDE 164
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 47/159 (29%), Positives = 82/159 (51%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
DER + + FS+ GK V+++ D +S +SKG G+V F + A+ ++G+ + GQ +
Sbjct: 261 DER-LKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLI 318
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q +LY+ NL + +++LR F FG+
Sbjct: 319 FV--GRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGS 376
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ V++ + E G KGFG + F+ EDA A+ +NG++
Sbjct: 377 ISRVKV-MQEEGQSKGFGLICFSSPEDATKAMTEMNGRI 414
Score = 159 (61.0 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 52/181 (28%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +YE FS GK+ +++ D + SKG +V F + + AI +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G+ L G V V + K+ +Y+ N +M +++L
Sbjct: 216 NGKLLKGCKVFVGRFKNRKD-----------REAELRSKASEFTNVYIKNFGGDMDDERL 264
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAI 431
+ VF +G V++ D +G KGFGFV F E A+ A+ ++NGQL VGRA
Sbjct: 265 KDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 324
Query: 432 K 432
K
Sbjct: 325 K 325
Score = 108 (43.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALN-L 420
LYVG+LH ++TED L + F G V +++ D+ T G+ +V F +L DA+ AL+ +
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 421 NGQLEIVGRAIKV 433
N + I G++I++
Sbjct: 130 NFDI-IKGKSIRL 141
Score = 67 (28.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKDSAG----FVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD E ++ SK+GK + V DS+G F ++ F++ ++A A ++GR G+
Sbjct: 258 DMD-DERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQ 316
Query: 628 MI 629
+I
Sbjct: 317 LI 318
Score = 58 (25.5 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 577 EDVEGECSKFGKLKHIFV---EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630
E + E S FG + + V E S GF + F + + A A ++GR K ++
Sbjct: 365 EKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 421
Score = 57 (25.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 584 SKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAG-KMITATFMVPQTY 639
S FGK+ V D S G+ ++ F+N +A A ++G+ G K+ F +
Sbjct: 177 SAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDR 236
Query: 640 EAK 642
EA+
Sbjct: 237 EAE 239
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 175 (66.7 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 47/159 (29%), Positives = 84/159 (52%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D++ + E FS G V+++MD ++ RS+G G+V + + A++ ++G+ + G+ +
Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +D+LR+ F P+GT
Sbjct: 262 YV--GRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E GH KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 133 (51.9 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+Y+ N +M + +LR++F FG V++ +D+TG +GFGFV + E+A+ A++ +N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 422 GQLEIVGRAIKV 433
G+ E+ GR I V
Sbjct: 253 GK-EVNGRMIYV 263
Score = 87 (35.7 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D +RRS G Y+ F A+ ++ + + G+P+
Sbjct: 24 EAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIR 83
Query: 329 VKPSEAEKNL 338
+ S+ + L
Sbjct: 84 IMWSQRDPGL 93
Score = 81 (33.6 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG + ++ DE G +G+GFV F E A A+ +N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRAIQTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 52 (23.4 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD K + S FG + V D S GF ++ + N + A A ++G+ G+
Sbjct: 201 DMDDKR-LREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
Query: 628 MI 629
MI
Sbjct: 260 MI 261
Score = 44 (20.5 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 559 NMFDPKNETYEEFDMDIKED-VEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFA 614
N + N + D I +D + E S +G + V + S GF ++ F + + A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATK 348
Query: 615 AQRALHGR 622
A ++GR
Sbjct: 349 AVTEMNGR 356
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 176 (67.0 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 48/159 (30%), Positives = 84/159 (52%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D++ + E FS G V+++MD +S RS+G G+V + + A++ ++G+ + G+ +
Sbjct: 203 DDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +D+LR+ F P+GT
Sbjct: 262 YV--GRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E GH KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 129 (50.5 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 26/72 (36%), Positives = 47/72 (65%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+Y+ N +M + +LR++F FG V++ +D++G +GFGFV + E+A+ A++ +N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 422 GQLEIVGRAIKV 433
G+ E+ GR I V
Sbjct: 253 GK-EVNGRMIYV 263
Score = 81 (33.6 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D +RRS Y+ F A+ ++ + + G+P+
Sbjct: 24 EAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIR 83
Query: 329 VKPSEAEKNL 338
+ S+ + L
Sbjct: 84 IMWSQRDPGL 93
Score = 80 (33.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG + ++ DE G +G+GFV F E A A+ +N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 52 (23.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD K + S FG + V D S GF ++ + N + A A ++G+ G+
Sbjct: 201 DMDDKR-LREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGR 259
Query: 628 MI 629
MI
Sbjct: 260 MI 261
Score = 38 (18.4 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 559 NMFDPKNETYEEFDMDIKED-VEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFA 614
N + N + D I +D + E +G + V + S GF ++ F + + A
Sbjct: 289 NRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATK 348
Query: 615 AQRALHGR 622
A ++GR
Sbjct: 349 AVTEMNGR 356
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 176 (67.0 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 49/178 (27%), Positives = 87/178 (48%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
++ I L E + FS GK+ + L D++ + SKG G+V F D S A+ L
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGK-SKGFGFVNFEDHESAVKAVEEL 293
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+ + + GQ + V ++ ++ ++ L+V NL + ++L
Sbjct: 294 NDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVN-LFVKNLDDTIDSEKL 352
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 434
+ F+PFGT+ ++ +DE G KGFGFV F E+A A+ +N ++ I G+ + V+
Sbjct: 353 EEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRM-INGKPLYVA 409
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 49/171 (28%), Positives = 76/171 (44%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D + +++ FS GK+ ++ D + SK G+V + + AI ++G L + V
Sbjct: 152 DNKALHDTFSAFGKILSCKVATDEFGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREV 210
Query: 328 MVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV 387
V ++K+ +YV N+ N +E+ ++F PFG +
Sbjct: 211 FVGKHISKKD-----------RESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKI 259
Query: 388 ELVQLPLDETGHCKGFGFVQFARLEDARNA---LN---LNGQLEIVGRAIK 432
+ L D+ G KGFGFV F E A A LN +NGQ VGRA K
Sbjct: 260 TSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Score = 122 (48.0 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 49/188 (26%), Positives = 78/188 (41%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVM 328
+E ++E FS G+V +R+ D S++S G YV ++ AI + L P+
Sbjct: 64 NEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI----EELNYNPIE 119
Query: 329 VKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVE 388
+P +++ NLH + L F FG +
Sbjct: 120 GRPCRI------------MWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL 167
Query: 389 LVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQL----EI-VGRAIKVSAVTDQSGL 442
++ DE G K FGFV + E A A+ N+NG L E+ VG+ I S +S
Sbjct: 168 SCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHI--SKKDRESKF 225
Query: 443 QDLGANTT 450
+++ AN T
Sbjct: 226 EEMKANFT 233
Score = 79 (32.9 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 569 EEFDMDIKED-VEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRW 623
+ D++ E+ E S FGK+ I++EKD S GF ++ FE+ +SA A L+ +
Sbjct: 238 KNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 624 FAGKMI 629
G+ I
Sbjct: 298 INGQKI 303
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 172 (65.6 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 51/181 (28%), Positives = 90/181 (49%)
Query: 258 TVFAYQICLKADERDVYEFFSRA-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
T+F + + + + + F G V+ ++++DR + RSKG G+V F D A+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 317 -LSGQPLLGQPVMVKPSEAEKN-LVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTE 374
++GQ +P+ + P+ A KN L ++VG L N+T+
Sbjct: 215 EMNGQYCSTRPMRIGPA-ANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTD 273
Query: 375 DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
D+L+ +F FG EL+ + + C GFVQ+A A +AL+ LNG ++ G++I++
Sbjct: 274 DELKSIFGQFG--ELLHVKIPPGKRC---GFVQYANKASAEHALSVLNGT-QLGGQSIRL 327
Query: 434 S 434
S
Sbjct: 328 S 328
Score = 117 (46.2 bits), Expect = 0.00059, P = 0.00059
Identities = 43/177 (24%), Positives = 79/177 (44%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVM 328
DE + F+++G+ ++I ++ + +S+G G++EF SV + Q G P+
Sbjct: 72 DENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVS-HSVAERVL---QTYNGAPMP 127
Query: 329 VKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEP-FGTV 387
N Q ++VG+L +T+ L F+ +G+V
Sbjct: 128 STEQTFRLNWAQAGAGEKRFQTEGPDHT------IFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 388 ELVQLPLDET-GHCKGFGFVQFA-RLEDARNALNLNGQLEIVGRAIKVSAVTDQSGL 442
+ ++ LD T G KG+GFV+FA E R +NGQ R +++ +++ L
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQY-CSTRPMRIGPAANKNAL 237
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 179 (68.1 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 57/184 (30%), Positives = 94/184 (51%)
Query: 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRL-IMDRNSRRSKGVGYVEFYDVMSVPMA 314
+ T+F ADE + + FS+ G++ D+R + N+ R Y++F ++ A
Sbjct: 904 ETTLFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRR--FCYLQFKTSVAAHSA 961
Query: 315 IALSGQPL-LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
+AL G + G ++VK S+ + R ++V N++++ +
Sbjct: 962 LALDGSAVGNGLHLVVKISDPSRK-------------QDRNGPIYEGREIHVSNVNWSAS 1008
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA--I 431
ED L+++F FGTVELV+LP G KGFG+V F+ E+A AL ++ Q E GR +
Sbjct: 1009 EDDLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQ-EFRGRPLHV 1067
Query: 432 KVSA 435
KVSA
Sbjct: 1068 KVSA 1071
>TAIR|locus:2115280 [details] [associations]
symbol:ATU2AF65A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0042742 "defense
response to bacterium" evidence=IEP] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 GO:GO:0042742 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161589 GO:GO:0000398 EMBL:Z99708 HSSP:P26368 EMBL:AF462805
EMBL:AY080711 EMBL:AY143980 EMBL:BT000965 EMBL:BX827587
IPI:IPI00524736 IPI:IPI00525889 IPI:IPI00534734 PIR:C85433
RefSeq:NP_195387.1 RefSeq:NP_849509.1 RefSeq:NP_974695.1
UniGene:At.21204 ProteinModelPortal:O23212 SMR:O23212 IntAct:O23212
STRING:O23212 PaxDb:O23212 PRIDE:O23212 EnsemblPlants:AT4G36690.1
GeneID:829822 KEGG:ath:AT4G36690 TAIR:At4g36690 eggNOG:NOG298004
HOGENOM:HOG000180745 InParanoid:O23212 KO:K12837 OMA:EDIRMEA
PhylomeDB:O23212 ProtClustDB:CLSN2915914 Genevestigator:O23212
TIGRFAMs:TIGR01642 Uniprot:O23212
Length = 573
Score = 100 (40.3 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 51/208 (24%), Positives = 82/208 (39%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRA-----GKVRDVR-LIMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FFS+ G +++ K +VE
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 308 VMSVPMAIALSGQPLLGQPVMVK-PSEAEKNLVQXXX---------XXXXXXXXXXXXXX 357
V A++L G G PV V+ PS+ +L
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL 355
Query: 358 XXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARN 416
R++VG L + TE Q+R++ E FG ++ L D ETG+ KG+ F + L
Sbjct: 356 EGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDI 415
Query: 417 ALN-LNGQLEIVGRAIKVSAVTDQSGLQ 443
A LNG +++ + + V + LQ
Sbjct: 416 ACAALNG-IKMGDKTLTVRRANQGTMLQ 442
Score = 88 (36.0 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 569 EEFDMDIKEDVEGECSKFGKLKHIFVEKDS------AGF--VYLRFENTQSAFAAQRALH 620
EE+ DI ED+ E KFG L ++ + + S AG V+L++ +T + A+ ++
Sbjct: 489 EEYG-DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMN 547
Query: 621 GRWFAGKMITATFMVPQTYE 640
GR F G + A + +E
Sbjct: 548 GRKFGGNEVVAVYYPEDKFE 567
Score = 75 (31.5 bits), Expect = 6.6e-10, Sum P(3) = 6.6e-10
Identities = 24/67 (35%), Positives = 32/67 (47%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKC----KSDEKVEDYDDDGHRSR---GSKSRDESRN 71
+K++E G + D SR S+ KS E+ D D D HR R S+ RD SR
Sbjct: 51 SKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRD-HRERHHRSSRHRDHSRE 109
Query: 72 HDRRKER 78
R+ER
Sbjct: 110 RGERRER 116
Score = 72 (30.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 21 EKETANGDGNVKSEDRVRSRSSKCKSDEKVE--DYDDDGHRSRGSKSRDESRNHDRRKER 78
E+ET+ K +R + R + D +V D DG +S+ +SRD+ R+H R R
Sbjct: 45 ERETSRS----KDREREKGRDKDRERDSEVSRRSRDRDGEKSK-ERSRDKDRDHRERHHR 99
Query: 79 DS 80
S
Sbjct: 100 SS 101
Score = 67 (28.6 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D D E + + + ++E+ G +D RSR + ++ D D G RSR
Sbjct: 90 DRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD---RDHDRRRD-DRGGRRSR 145
Query: 62 GSKSRDESRNHDRRKERDSS 81
S+SR + R+ R + R S
Sbjct: 146 RSRSRSKDRSERRTRSRSPS 165
Score = 60 (26.2 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 21 EKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDS 80
++E DG + ED++ S+ + E D + SR SK R+ + D+ +ERDS
Sbjct: 19 DEENGGRDGEI--EDQLDSKPKR-------ESRDHERETSR-SKDREREKGRDKDRERDS 68
Score = 51 (23.0 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 21 EKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
E E G+G V D + + + E + D R R+ SR+ DR +E+
Sbjct: 3 EFEDHEGNGTVA--DAIYDEENGGRDGEIEDQLDSKPKRESRDHERETSRSKDREREK 58
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 140 (54.3 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 28/73 (38%), Positives = 47/73 (64%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
+ L + NL ++ TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN
Sbjct: 111 KTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 167
Query: 421 NGQLEIVGRAIKV 433
+ EI GRAI++
Sbjct: 168 CNKREIEGRAIRL 180
Score = 54 (24.1 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE +G S ++ S GF ++ F + +
Sbjct: 195 PSKTLFVKGLSE---DTTEE---TLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEE 246
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 247 DAKAAKEAMEDGEIDGNKVTLDWAKPK 273
Score = 49 (22.3 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
K + ++ E F A ++R ++ ++ + SKG+ Y+EF
Sbjct: 4 KVTQDELKEVFEDAAEIR----LVSKDGK-SKGIAYIEF 37
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 160 (61.4 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 50/176 (28%), Positives = 89/176 (50%)
Query: 273 VYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331
+ +FFS+ G +++DVRL +K GYV+F + A+ L+G+ LLGQPV +
Sbjct: 310 ISKFFSKEGLEIQDVRL------GGTKKFGYVDFASEEELQKALELNGKKLLGQPVKLDK 363
Query: 332 SEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQ 391
+ +++N + R L+V NL +++T+D LR++F+ V+ ++
Sbjct: 364 ARSKENSQENKKERDA-------------RTLFVKNLPYSITQDDLREIFDQ--AVD-IR 407
Query: 392 LPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGA 447
+P+ TG +G +++F A AL ++ GR+I V D+S GA
Sbjct: 408 VPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGA 463
Score = 114 (45.2 bits), Expect = 8.4e-05, Sum P(3) = 8.4e-05
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422
L V NL F+ +ED L+ VFE ++ + Q G KG+ FV+F +ED++ AL
Sbjct: 470 LVVNNLAFSASEDSLQSVFEKAVSIRIPQ----NNGRPKGYAFVEFENVEDSKEALENCN 525
Query: 423 QLEIVGRAIKV 433
+I GR+I++
Sbjct: 526 NTDIEGRSIRL 536
Score = 112 (44.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422
L++GNL+ N D+L+ F + E +++ G K FG+V FA E+ + AL LNG
Sbjct: 292 LFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALELNG 351
Query: 423 QLEIVGRAIKVSAVTDQSGLQD 444
+ +++G+ +K+ + Q+
Sbjct: 352 K-KLLGQPVKLDKARSKENSQE 372
Score = 59 (25.8 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFE 607
P++ L +K + D + D +K+ +G + I ++D S GF ++ F+
Sbjct: 555 PTKTLFVKGLSD------DTTDQTLKDSFDGAIAA-----RIATDRDTGSSKGFGFVDFD 603
Query: 608 NTQSAFAAQRALHGRWFAGKMITATFMVPQ 637
N Q AA+ A+ G +T + P+
Sbjct: 604 NEQDCKAAKEAMDDGEIDGNKVTLDYAKPK 633
Score = 41 (19.5 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHD 73
E+ +E +T K V+++ + D+ +D +DD + + R +
Sbjct: 214 EDDSEEEEMDTTPAP-KAKKAGMVKAKEESEEEDD--DDEEDDDEEEEETPATPAKRKAE 270
Query: 74 RRKER 78
+KE+
Sbjct: 271 TKKEK 275
Score = 39 (18.8 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 64 KSRDESRNHDRRKERDS 80
K+R + + + +KERD+
Sbjct: 363 KARSKENSQENKKERDA 379
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 170 (64.9 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +D+L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDDKL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN------LNGQLEIVGRAI 431
+ +F +G +++ DE G +GFGFV F R EDA+ A++ +NG+L VGRA
Sbjct: 208 KDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQ 267
Query: 432 K 432
K
Sbjct: 268 K 268
Score = 163 (62.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/159 (28%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
D+ + + FS+ G +R++ D N + S+G G+V F A+ ++G+ + G+ +
Sbjct: 203 DDDKLKDIFSKYGNAMSIRVMTDENGK-SRGFGFVSFERHEDAQRAVDEMNGKEMNGKLI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ +D G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 48 (22.0 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V D S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 174 (66.3 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 52/183 (28%), Positives = 79/183 (43%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-- 315
T+F ++ A + E FS+ G V+ ++ ++ S+ +G GYV F V V A+
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKE 64
Query: 316 --ALSGQPL---LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHF 370
G + + + + S+ EK + RL + NL F
Sbjct: 65 ITTFEGCKINVTIAKKKLRNKSK-EKGKTENSESPEKELKPKKAKVADKKARLIIRNLSF 123
Query: 371 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 430
+ED L+ VF FGT+ V +P G +GF FVQF L +A AL EI GR
Sbjct: 124 KCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKGRT 183
Query: 431 IKV 433
+ V
Sbjct: 184 VAV 186
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 136 (52.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 45/182 (24%), Positives = 89/182 (48%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL 317
TVF I +E V + F++ G + D+ +I D+ + SKG ++ F A+
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNT 78
Query: 318 ---SGQPL--LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
SG L + +P+ VK S+ E ++ R+L++G L +
Sbjct: 79 TNESGTFLENMNKPLQVKYSDNEIEKME--------------------RKLFIGMLGTS- 117
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAI 431
EDQ+R +F +G +E + + ++ G KG+GF++++ +++ NAL ++G+ + G +
Sbjct: 118 DEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNL 177
Query: 432 KV 433
+
Sbjct: 178 PI 179
Score = 76 (31.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 592 IFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 633
+F++K+ S F ++ ++NTQSA AA + L+GR GK + F
Sbjct: 318 VFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNF 362
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN 421
LYVG + ++T D LR F PFG + V LP+D +T KGFGF+ F EDA +AL+
Sbjct: 17 LYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAADALDNM 76
Query: 422 GQLEIVGRAIKVS 434
+ EI GR IK S
Sbjct: 77 HESEIFGRVIKCS 89
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 171 (65.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 48/173 (27%), Positives = 88/173 (50%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
++ + + DE+ + + FS+ GK + V+++ D N + S+G G++ F A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQ-SRGFGFINFEKHEEAQKAVDHM 251
Query: 318 SGQPLLGQPVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G+ + GQ + V A+K Q LYV NL ++ +D+
Sbjct: 252 NGKEVSGQLLYV--GRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
L++VF +G + ++ + E+ H KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 310 LKEVFSTYGVITSAKV-MTESSHSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 145 (56.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/171 (26%), Positives = 78/171 (45%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
D + +Y+ FS G + +++ N S+G G+V F + AI ++G L + V
Sbjct: 111 DNKALYDTFSTFGSILSSKVVY--NEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKV 168
Query: 328 MVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV 387
V ++ + +YV NL +M E L+ +F FG
Sbjct: 169 FVGHFKSRQK-----------REAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKT 217
Query: 388 ELVQLPLDETGHCKGFGFVQFARLEDARNALN------LNGQLEIVGRAIK 432
+ V++ D G +GFGF+ F + E+A+ A++ ++GQL VGRA K
Sbjct: 218 QSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Score = 109 (43.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-L 420
LYVG+LH ++TE L ++F P GT+ +++ D T G+ ++ F + DA AL+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDLG 446
N ++ I G+ I++ GL+ G
Sbjct: 73 NFEM-IKGQPIRIMWSHRDPGLRRSG 97
Score = 87 (35.7 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+++ NL ++ L F FG++ ++ +E G +GFGFV F E A+ A+N +N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINTMN 159
Query: 422 GQL 424
G L
Sbjct: 160 GML 162
Score = 86 (35.3 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS G + +R+ D +RRS G Y+ F A+ ++ + + GQP+
Sbjct: 24 EAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIR 83
Query: 329 VKPSEAEKNL 338
+ S + L
Sbjct: 84 IMWSHRDPGL 93
Score = 68 (29.0 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKDS----AGFVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD ++ ++ S+FGK + + V +DS GF ++ FE + A A ++G+ +G+
Sbjct: 201 DMD-EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQ 259
Query: 628 MI 629
++
Sbjct: 260 LL 261
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 558 KNMFDPKNETYEEFDMDIKEDVEGEC-SKFGKLKHIFVEKDSA---GFVYLRFENTQSAF 613
+N + N + D I +D E S +G + V +S+ GF ++ F + + A
Sbjct: 288 QNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEAT 347
Query: 614 AAQRALHGR 622
A ++GR
Sbjct: 348 KAVTEMNGR 356
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 146 (56.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 42/183 (22%), Positives = 90/183 (49%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318
V+ I + E + + F+ G ++ + + D + + KG +VE+ + +A+
Sbjct: 23 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 82
Query: 319 GQPLLG-QPVMV-KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+LG + + V +PS N+ Q R+YV ++H ++++D
Sbjct: 83 NSVMLGGRNIKVGRPS----NIGQAQPIIDQLAEEARAF-----NRIYVASVHQDLSDDD 133
Query: 377 LRQVFEPFGTVELVQLPLDET-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS- 434
++ VFE FG ++ L D T G KG+GF+++ + + +++A++ ++ G+ ++V
Sbjct: 134 IKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 193
Query: 435 AVT 437
AVT
Sbjct: 194 AVT 196
Score = 129 (50.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
R+YVG++++ + ED +RQ F PFG ++ + + D T KGF FV++ E A+ AL
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 421 NGQLEIVGRAIKV 433
+ + GR IKV
Sbjct: 82 MNSVMLGGRNIKV 94
Score = 65 (27.9 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 602 VYLRFENTQSAFAAQRALHGRWFAGKMITA 631
+++ F A +AL+GRWFAG+ + A
Sbjct: 362 IFVEFSVASETHKAIQALNGRWFAGRKVVA 391
Score = 47 (21.6 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 15/65 (23%), Positives = 32/65 (49%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALH-----GRWF-A 625
+D++ FGK+K + +D G+ ++ +E QS+ A +++ G++
Sbjct: 132 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 191
Query: 626 GKMIT 630
GK +T
Sbjct: 192 GKAVT 196
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 170 (64.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 53/181 (29%), Positives = 84/181 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F AI +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ ++ +Y+ NL +M +++L
Sbjct: 159 NGMFLNDRKVFVGRFKSRRD-----------RQAELGARAKEFTNVYIKNLGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN------LNGQLEIVGRAI 431
+ +F FG V++ DE+G KGFGFV F R EDAR A++ LNG+ VGRA
Sbjct: 208 QDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQ 267
Query: 432 K 432
K
Sbjct: 268 K 268
Score = 151 (58.2 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 51/167 (30%), Positives = 80/167 (47%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + FSR G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Query: 328 MV----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRR-----LYVGNLHFNMTEDQLR 378
V K E + L R LYV NL + +++LR
Sbjct: 262 YVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLR 321
Query: 379 QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ F PFGT+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 322 KEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 367
Score = 45 (20.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 318 ERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 371
Score = 42 (19.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 521 QGTVPTHPGQ-LGTALQVPTASVPIFDTIGVPS 552
QGT HP Q + +A+ P+ ++P F T G S
Sbjct: 451 QGT-RAHPFQNMSSAIH-PSNTMPSFSTSGPTS 481
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 169 (64.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ + E FS+ GK V+++ D N + SKG G+V + A+ ++G+ + G+
Sbjct: 103 EVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGK 161
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 162 IIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 219
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 220 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 261
Score = 144 (55.7 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 47/177 (26%), Positives = 78/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 60
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 61 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDESL 109
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 110 KELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKIIFV 165
Score = 46 (21.3 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 210 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 263
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 154 (59.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 44/183 (24%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEFY+ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 120
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 435 AVT 437
T
Sbjct: 181 WAT 183
Score = 145 (56.1 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 49/186 (26%), Positives = 83/186 (44%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+D VF + + D+ F+ G++ D R++ D + +SKG G+V F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 314 AIA-LSGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
AI + GQ L G+ + KP A K+ + +Y G
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCT-VYCGG 220
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEI 426
+ +TE +RQ F PFG + +++ D KG+ FV+F E A +A+ ++NG I
Sbjct: 221 VTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 427 VGRAIK 432
G +K
Sbjct: 275 EGHVVK 280
Score = 104 (41.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFYEHRHAAAALAA 65
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 68 (29.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 631 --ATFMVP---QTYEA 641
AT P TYE+
Sbjct: 180 NWATRKPPAPKSTYES 195
Score = 54 (24.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V D G+ ++RF + +SA A +++G G ++
Sbjct: 235 SPFGQIMEIRVFPDK-GYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 149 (57.5 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 48/181 (26%), Positives = 82/181 (45%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++RL+ +SKG+ Y+EF
Sbjct: 392 RAARTLLAKNLSFNITEDELKEVFEDA---MEIRLVSQDG--KSKGIAYIEFKSEADAEK 446
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
+ G + G+ V + + EK Q + L + NL ++
Sbjct: 447 NLEEKQGAEIDGRSVSLYYT-GEKGQRQERTGKTSTWSGES-------KTLVLSNLSYSA 498
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
T++ L +VFE +++P + G KG+ F++FA EDA+ ALN ++EI GR I+
Sbjct: 499 TKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIR 555
Query: 433 V 433
+
Sbjct: 556 L 556
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
R L NL FN+TED+L++VFE + LV + G KG +++F DA L
Sbjct: 395 RTLLAKNLSFNITEDELKEVFEDAMEIRLVS----QDGKSKGIAYIEFKSEADAEKNLEE 450
Query: 421 NGQLEIVGRAIKVSAVTDQSGLQDLGANTTXXXXXXXXXXLS 462
EI GR++ + ++ Q+ T+ LS
Sbjct: 451 KQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLS 492
Score = 102 (41.0 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 325 QPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLR-QVFEP 383
+PV P + +K + + L++GNL+ N + ++L+ + E
Sbjct: 273 EPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISEL 332
Query: 384 FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
F +L + + TG + FG+V F ED AL L G L++ G IK+
Sbjct: 333 FAKNDLAVVDV-RTGTNRKFGYVDFESAEDLEKALELTG-LKVFGNEIKL 380
Score = 57 (25.1 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQ 610
PS+ L +K + + +T EE +KE EG S ++ S GF ++ F + +
Sbjct: 567 PSKTLFVKGLSE---DTTEE---TLKESFEG--SVRARIVTDRETGSSKGFGFVDFNSEE 618
Query: 611 SAFAAQRALHGRWFAGKMITATFMVPQ 637
A AA+ A+ G +T + P+
Sbjct: 619 DAKAAKEAMEDGEIDGNKVTLDWAKPK 645
Score = 52 (23.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 289 IMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQ 340
++D + ++ GYV+F + A+ L+G + G + + KP + V+
Sbjct: 340 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVR 392
Score = 51 (23.0 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSR 61
D +E + E+ ++ E E TA G ++++S + D++ ED DD+
Sbjct: 199 DDEEDDDEEEEDDSEEEVMEITTAKGKKTPAKVVPMKAKSVAEEEDDEEEDEDDEDEDDE 258
Query: 62 GSKSRDESRNHDRRK 76
D+ + +
Sbjct: 259 EEDDEDDDEEEEEEE 273
Score = 42 (19.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 16 PEPAKEKET--ANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDD 56
P P K+ A G N K+ + S + + DE D D+D
Sbjct: 120 PTPGKKGAATPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDED 162
Score = 42 (19.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGN-VKSEDRVRSRSSKCKSDEKVEDYDDDGHRS 60
D DE E E ++ E ++E + VK ++ + S+++ +D D+D
Sbjct: 144 DSDEDEDEEDEDDSDEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDDEDEDDEED 203
Query: 61 RGSKSRDES 69
+ D+S
Sbjct: 204 DDEEEEDDS 212
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 154 (59.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 44/183 (24%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEFY+ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALA 64
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 120
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 435 AVT 437
T
Sbjct: 181 WAT 183
Score = 145 (56.1 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 49/186 (26%), Positives = 83/186 (44%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+D VF + + D+ F+ G++ D R++ D + +SKG G+V F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 314 AIA-LSGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
AI + GQ L G+ + KP A K+ + +Y G
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCT-VYCGG 220
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEI 426
+ +TE +RQ F PFG + +++ D KG+ FV+F E A +A+ ++NG I
Sbjct: 221 VTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 427 VGRAIK 432
G +K
Sbjct: 275 EGHVVK 280
Score = 104 (41.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFYEHRHAAAALAA 65
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 68 (29.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 631 --ATFMVP---QTYEA 641
AT P TYE+
Sbjct: 180 NWATRKPPAPKSTYES 195
Score = 54 (24.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V D G+ ++RF + +SA A +++G G ++
Sbjct: 235 SPFGQIMEIRVFPDK-GYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>UNIPROTKB|F1NHX3 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00590059
Ensembl:ENSGALT00000016052 ArrayExpress:F1NHX3 Uniprot:F1NHX3
Length = 406
Score = 166 (63.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E + + + I+E + +CS + HI V+K+S G VY++ + + A
Sbjct: 280 CLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYA 339
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 340 GKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 374
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 169 (64.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 49/173 (28%), Positives = 88/173 (50%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
++ + + DE+ + + FS+ GK+ V+++ D NS S+ G+V F A+ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 318 SGQPLLGQPVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+G+ + G+ ++ A+K + Q LYV NL ++ +D+
Sbjct: 252 NGKEVSGR--LLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDK 309
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
LR+ F P+G + ++ + E GH KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 310 LRKEFSPYGVITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 138 (53.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 43/165 (26%), Positives = 78/165 (47%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
D + +Y+ FS G + ++ D + S+G G+V F + AI ++G L + V
Sbjct: 111 DNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV 168
Query: 328 MVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV 387
V ++ + +YV NL ++ E L+ +F FG +
Sbjct: 169 FVGHFKSRRE-----------REAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 388 ELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
V++ D +GH + FGFV F + E+A+ A+ ++NG+ E+ GR +
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK-EVSGRLL 261
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 569 EEFDMDIKED-VEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
+ D I +D + E S +G + V + S GF ++ F + + A A ++GR
Sbjct: 299 KNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 169 (64.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ + E FS+ GK V+++ D N + SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 IIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 144 (55.7 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 47/177 (26%), Positives = 78/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDESL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 208 KELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKIIFV 263
Score = 46 (21.3 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 169 (64.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ + E FS+ GK V+++ D N + SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 IIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 144 (55.7 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 47/177 (26%), Positives = 78/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDESL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 208 KELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKIIFV 263
Score = 46 (21.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>UNIPROTKB|F1NZN4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005639
"integral to nuclear inner membrane" evidence=IEA] [GO:0030512
"negative regulation of transforming growth factor beta receptor
signaling pathway" evidence=IEA] [GO:0030514 "negative regulation
of BMP signaling pathway" evidence=IEA] [GO:0032926 "negative
regulation of activin receptor signaling pathway" evidence=IEA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926 GO:GO:0030512
GO:GO:0030514 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AADN02009903 EMBL:AADN02009904 IPI:IPI00822008
Ensembl:ENSGALT00000038639 OMA:VAGKHEC ArrayExpress:F1NZN4
Uniprot:F1NZN4
Length = 436
Score = 166 (63.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E + + + I+E + +CS + HI V+K+S G VY++ + + A
Sbjct: 310 CLKIRNMFDPVMEIGDHWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYA 369
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 370 GKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 404
>ZFIN|ZDB-GENE-030131-490 [details] [associations]
symbol:lemd3 "LEM domain containing 3" species:7955
"Danio rerio" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402
INTERPRO:IPR003887 ZFIN:ZDB-GENE-030131-490 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.720.40 InterPro:IPR011015
Pfam:PF03020 SUPFAM:SSF63451 PROSITE:PS50954 SMART:SM00540
GO:GO:0005639 GeneTree:ENSGT00530000063791 CTD:23592
HOGENOM:HOG000063699 HOVERGEN:HBG006319 OrthoDB:EOG4HQDHV
EMBL:BX119963 EMBL:BC168502 IPI:IPI00498035 RefSeq:NP_001038329.1
UniGene:Dr.106184 SMR:Q5TZH9 STRING:Q5TZH9
Ensembl:ENSDART00000013604 GeneID:558474 KEGG:dre:558474
InParanoid:Q5TZH9 OMA:TRYSSGE NextBio:20882487 Uniprot:Q5TZH9
Length = 841
Score = 170 (64.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E E + + I+E + +CS + HI V+K+S G VY++ + + +
Sbjct: 714 CLKIRNMFDPVMEVGENWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSAEHS 773
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 774 GKAFKALHGSWFDGKLVTVKYLRLDRYHQRFPQAL 808
>UNIPROTKB|J9NVV1 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AAEX03007007 Ensembl:ENSCAFT00000048719 Uniprot:J9NVV1
Length = 615
Score = 168 (64.2 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 34/95 (35%), Positives = 58/95 (61%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E +++ + I+E + +CS + HI V+K+S G VY++ + + A
Sbjct: 489 CLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYA 548
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 549 GKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 583
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 159 (61.0 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 37 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 94
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 95 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 152
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 153 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 190
Score = 131 (51.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+Y+ N +M +++L+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +N
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 85
Query: 422 GQLEIVGRAIKV 433
G+ E+ G+ I V
Sbjct: 86 GK-ELNGKQIYV 96
Score = 44 (20.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 141 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 194
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 167 (63.8 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 94
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 95 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 143
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 144 KELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 199
Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 49/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + E F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 140 DER-LKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 197
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 198 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 255
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 256 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 293
Score = 44 (20.5 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 244 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 297
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 168 (64.2 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ ++ E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 VIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 148 (57.2 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 47/177 (26%), Positives = 79/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDENL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D +G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 208 KELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK-EITGKVIFV 263
Score = 46 (21.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 167 (63.8 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ ++ E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 130 EVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 188
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 189 SIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 246
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 247 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 288
Score = 143 (55.4 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 47/177 (26%), Positives = 80/177 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 87
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDENL 136
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
R++F FG V++ D +G KGFGFV + + EDA A+ +NG+ E+ G++I V
Sbjct: 137 RELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSIFV 192
Score = 46 (21.3 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 237 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 290
>UNIPROTKB|F1PZA4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005639 GeneTree:ENSGT00530000063791
EMBL:AAEX03007007 Ensembl:ENSCAFT00000036610 OMA:YGKPKLS
Uniprot:F1PZA4
Length = 708
Score = 168 (64.2 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 34/95 (35%), Positives = 58/95 (61%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E +++ + I+E + +CS + HI V+K+S G VY++ + + A
Sbjct: 582 CLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYA 641
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 642 GKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 676
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 164 (62.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 47/181 (25%), Positives = 87/181 (48%)
Query: 258 TVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI 315
T+F + + + E F RA V+ ++++DR + R+KG G+V F D A+
Sbjct: 156 TIFVGDLAADVTDYILLETF-RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAM 214
Query: 316 A-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTE 374
++G P +P+ + P+ ++K + ++VG L ++T+
Sbjct: 215 TEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTD 274
Query: 375 DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
D L+ VF +G + V++P + C GFVQF+ A AL LNG +++ G +++
Sbjct: 275 DHLKNVFSQYGEIVHVKIPAGK--RC---GFVQFSEKSCAEEALRMLNG-VQLGGTTVRL 328
Query: 434 S 434
S
Sbjct: 329 S 329
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 167 (63.8 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ ++ E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 VIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 146 (56.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 47/177 (26%), Positives = 79/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDENL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D +G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 208 KELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKVIFV 263
Score = 46 (21.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 167 (63.8 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ ++ E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 SIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 143 (55.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 47/177 (26%), Positives = 80/177 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDENL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
R++F FG V++ D +G KGFGFV + + EDA A+ +NG+ E+ G++I V
Sbjct: 208 RELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSIFV 263
Score = 46 (21.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 160 (61.4 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 51/187 (27%), Positives = 84/187 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + + F AG V V +I D+ + RS+G G+V V V A
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 318 SGQPLLGQPVMVK----PSEAEKNLVQXXXXXXXXXXXXXX----XXXXXXRRLYVGNLH 369
+G L G+P+ V P + E + R+YVGNL
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-NLNGQLEIV 427
+ + + L +F G V ++ D ++G KGFGFV + ++ +NA+ +L+G ++
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA-DLD 271
Query: 428 GRAIKVS 434
GR I+VS
Sbjct: 272 GRQIRVS 278
Score = 140 (54.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALN- 419
+L+VGNL FN+ QL Q+FE G VE+V++ D+ TG +GFGFV + + + A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 420 LNGQLEIVGRAIKVSA 435
NG E+ GR ++V+A
Sbjct: 152 FNGY-ELDGRPLRVNA 166
Score = 43 (20.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 579 VEGECSKFGKL--KHIFVEKDSA---GFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
+E S+ GK+ + ++DS GF ++ ++++Q A ++L G G+ I
Sbjct: 220 LESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 167 (63.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 48/165 (29%), Positives = 85/165 (51%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ ++ E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 SIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 143 (55.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 47/177 (26%), Positives = 80/177 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDENL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
R++F FG V++ D +G KGFGFV + + EDA A+ +NG+ E+ G++I V
Sbjct: 208 RELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSIFV 263
Score = 46 (21.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 167 (63.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 162 (62.1 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 49/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + E F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 167 (63.8 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 162 (62.1 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 49/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + E F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 166 (63.5 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 51/163 (31%), Positives = 83/163 (50%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
DER + E FS+ GK V+++ D + SKG G+V F A+ ++G+ + G+ V
Sbjct: 204 DER-LKELFSKYGKTLSVKVMTDPTGK-SKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LY+ NL + +++LR+ F PFG+
Sbjct: 262 FV--GRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
+ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 320 ITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 157 (60.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGDDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAI 431
+++F +G V++ D TG KGFGFV F + EDA A+ ++NG++ VGRA
Sbjct: 208 KELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
Query: 432 K 432
K
Sbjct: 268 K 268
Score = 46 (21.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 166 (63.5 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ + E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 201 EVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 259
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 260 VIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 317
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 318 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 359
Score = 146 (56.5 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 47/177 (26%), Positives = 79/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDESL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D +G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 208 KELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKVIFV 263
Score = 46 (21.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 167 (63.8 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 53/184 (28%), Positives = 78/184 (42%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-- 315
T+F ++ A + E FS+ G V+ ++ ++ S+ +G GYV F + V A+
Sbjct: 5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 316 --ALSGQPL----LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
G + + + K E KN + RL + NL
Sbjct: 65 ITTFEGCKINVTVAKKKLRNKTKEKGKN--ENSECPKKEPKAKKAKVADKKARLIIRNLS 122
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429
F +ED L+ VF FG V V +P G +GFGFVQF L +A AL EI GR
Sbjct: 123 FKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGR 182
Query: 430 AIKV 433
+ V
Sbjct: 183 TVAV 186
Score = 107 (42.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
+ +++ NL F+ E++L ++ + FG ++ V++ L +T H KG F QF E A+ L
Sbjct: 335 KTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLL 394
Query: 419 -----NLNGQLEIVGRAIKVS-AVT 437
N G L++ GR +KV AVT
Sbjct: 395 AASPENEAGGLKLDGRQLKVDLAVT 419
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSR 66
++ V+ P PAK + + D +++ D + +SD E+ +D + K R
Sbjct: 269 KRAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKR 325
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 113 (44.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ EDQ+R+ FE FG +E ++LP+D +T +GF F+ F + + L
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKIL 206
Score = 92 (37.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329
++D+ ++F++ G+V D + MD N+ RS+G G++ F D SV + L G+ ++
Sbjct: 77 KKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLDGR--LI 134
Query: 330 KPSEA 334
P +A
Sbjct: 135 DPKKA 139
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 149 (57.5 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 43/183 (23%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEF++ A+A
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 60
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 61 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 116
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 117 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 176
Query: 435 AVT 437
T
Sbjct: 177 WAT 179
Score = 147 (56.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 48/186 (25%), Positives = 84/186 (45%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+D VF + + D+ F+ G++ D R++ D + +SKG G+V F++
Sbjct: 99 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 158
Query: 314 AIA-LSGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
AI + GQ L G+ + KP A K+ + +Y G
Sbjct: 159 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVSQSSPGNCT-VYCGG 216
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEI 426
+ +TE +RQ F PFG + +++ D KG+ F++F+ E A +A+ ++NG I
Sbjct: 217 VTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFIRFSSHESAAHAIVSVNGTT-I 270
Query: 427 VGRAIK 432
G +K
Sbjct: 271 EGHVVK 276
Score = 104 (41.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 61
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 62 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 91
Score = 68 (29.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 116 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 175
Query: 631 --ATFMVP---QTYEA 641
AT P TYE+
Sbjct: 176 NWATRKPPAPKSTYES 191
Score = 55 (24.4 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V D G+ ++RF + +SA A +++G G ++
Sbjct: 231 SPFGQIMEIRVFPDK-GYSFIRFSSHESAAHAIVSVNGTTIEGHVV 275
>UNIPROTKB|Q9Y2U8 [details] [associations]
symbol:LEMD3 "Inner nuclear membrane protein Man1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035914
"skeletal muscle cell differentiation" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0030512 "negative regulation of
transforming growth factor beta receptor signaling pathway"
evidence=IDA] [GO:0032926 "negative regulation of activin receptor
signaling pathway" evidence=IDA] [GO:0030514 "negative regulation
of BMP signaling pathway" evidence=IDA] [GO:0005637 "nuclear inner
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=TAS]
[GO:0016021 "integral to membrane" evidence=IDA] InterPro:IPR012677
InterPro:IPR018996 Pfam:PF09402 INTERPRO:IPR003887 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0051726 GO:GO:0032926
Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020 SUPFAM:SSF63451
PROSITE:PS50954 GO:GO:0035914 GO:GO:0030512 GO:GO:0030514
SMART:SM00540 GO:GO:0005639 Orphanet:94063 EMBL:AF112299
EMBL:AF263918 EMBL:AF180135 EMBL:AF180136 EMBL:AF180137
EMBL:AF180138 EMBL:AF180139 EMBL:AF180140 EMBL:AF180141
EMBL:AF180142 EMBL:AL137533 IPI:IPI00032491 PIR:T46377
RefSeq:NP_001161086.1 RefSeq:NP_055134.2 UniGene:Hs.741370 PDB:2CH0
PDBsum:2CH0 ProteinModelPortal:Q9Y2U8 SMR:Q9Y2U8 IntAct:Q9Y2U8
MINT:MINT-1199446 STRING:Q9Y2U8 PhosphoSite:Q9Y2U8 DMDM:13629600
PaxDb:Q9Y2U8 PeptideAtlas:Q9Y2U8 PRIDE:Q9Y2U8 DNASU:23592
Ensembl:ENST00000308330 GeneID:23592 KEGG:hsa:23592 UCSC:uc001ssl.2
CTD:23592 GeneCards:GC12P065563 HGNC:HGNC:28887 HPA:HPA025078
MIM:155950 MIM:166700 MIM:607844 neXtProt:NX_Q9Y2U8 Orphanet:1306
Orphanet:166119 Orphanet:1879 PharmGKB:PA134907442 eggNOG:NOG70255
HOGENOM:HOG000063699 HOVERGEN:HBG006319 InParanoid:Q9Y2U8
OMA:SPIPRYR OrthoDB:EOG4HQDHV PhylomeDB:Q9Y2U8
EvolutionaryTrace:Q9Y2U8 GenomeRNAi:23592 NextBio:46240
ArrayExpress:Q9Y2U8 Bgee:Q9Y2U8 CleanEx:HS_LEMD3
Genevestigator:Q9Y2U8 GermOnline:ENSG00000174106 Uniprot:Q9Y2U8
Length = 911
Score = 168 (64.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 34/95 (35%), Positives = 58/95 (61%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E +++ + I+E + +CS + HI V+K+S G VY++ + + A
Sbjct: 785 CLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYA 844
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 845 GKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 879
Score = 46 (21.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 45 KSDEKVEDYDDDGHRS--RGSKSRDESRNH 72
K +K+ + + HRS RG+K+R+ + N+
Sbjct: 41 KKLKKLREEEQQQHRSGGRGNKTRNSNNNN 70
Score = 45 (20.9 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 23/67 (34%), Positives = 26/67 (38%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE- 68
E+ E EP T NG V R SD + ED DDD SR D
Sbjct: 229 ERDPETEEPLWASRTVNGSRLVPYSCRENY------SDSEEED-DDDVASSRQVLKDDSL 281
Query: 69 SRNHDRR 75
SR+ RR
Sbjct: 282 SRHRPRR 288
>UNIPROTKB|E1BIJ4 [details] [associations]
symbol:LEMD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051726 "regulation of cell cycle" evidence=IEA]
[GO:0035914 "skeletal muscle cell differentiation" evidence=IEA]
[GO:0032926 "negative regulation of activin receptor signaling
pathway" evidence=IEA] [GO:0030514 "negative regulation of BMP
signaling pathway" evidence=IEA] [GO:0030512 "negative regulation
of transforming growth factor beta receptor signaling pathway"
evidence=IEA] [GO:0005639 "integral to nuclear inner membrane"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR018996 Pfam:PF09402
INTERPRO:IPR003887 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0051726
GO:GO:0032926 Gene3D:1.10.720.40 InterPro:IPR011015 Pfam:PF03020
SUPFAM:SSF63451 PROSITE:PS50954 GO:GO:0035914 GO:GO:0030512
GO:GO:0030514 SMART:SM00540 GO:GO:0005639
GeneTree:ENSGT00530000063791 OMA:SPIPRYR EMBL:DAAA02013330
EMBL:DAAA02013331 IPI:IPI00702391 Ensembl:ENSBTAT00000053178
Uniprot:E1BIJ4
Length = 913
Score = 168 (64.2 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 34/95 (35%), Positives = 58/95 (61%)
Query: 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-GFVYLRFENTQSA 612
CL ++NMFDP E +++ + I+E + +CS + HI V+K+S G VY++ + + A
Sbjct: 787 CLKIRNMFDPVMEIGDQWHLAIQEAILEKCSDNDGIVHIAVDKNSREGCVYVKCLSPEYA 846
Query: 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
A +ALHG WF GK++T ++ Y +FP ++
Sbjct: 847 GKAFKALHGSWFDGKLVTVKYLRLDRYHHRFPQAL 881
Score = 46 (21.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 45 KSDEKVEDYDDDGHRS--RGSKSRDESRNH 72
K +K+ + + HRS RG+K+R+ + N+
Sbjct: 41 KKLKKLREEEQQQHRSGGRGTKTRNSNNNN 70
Score = 40 (19.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 14 ENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE-SRNH 72
E+ +P E E G + R+ S + + E+ DDD SR D SR+
Sbjct: 228 EDRDP--EAEEPLWSGRTVNGSRLLPYSCRENYSDSEEEEDDDVASSRQVLKDDTLSRHR 285
Query: 73 DRR 75
RR
Sbjct: 286 PRR 288
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 165 (63.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 113
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 114 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 162
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 163 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 218
Score = 159 (61.0 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 159 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 216
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 217 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 274
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 275 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 312
Score = 44 (20.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 263 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 316
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 166 (63.5 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+ D+ + E FS+ GK V+++ D S +SKG G+V + A+ ++G+ + G+
Sbjct: 241 EVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGK 299
Query: 326 PVMVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPF 384
+ V A+K + Q LY+ NL + +++LR+ F PF
Sbjct: 300 VIFV--GRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF 357
Query: 385 GTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
G++ ++ L++ G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 358 GSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 399
Score = 146 (56.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 47/177 (26%), Positives = 79/177 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 198
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N + ++ L
Sbjct: 199 NGMLLNDRKVFVGRFKSRKE-----------REAELGAKAKEFTNVYIKNFGEEVDDESL 247
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+++F FG V++ D +G KGFGFV + + EDA A+ +NG+ EI G+ I V
Sbjct: 248 KELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK-EISGKVIFV 303
Score = 46 (21.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + + S GF ++ F + + A A ++GR K
Sbjct: 348 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 401
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 165 (63.1 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 142 (55.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 43/146 (29%), Positives = 71/146 (48%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLE 412
+ ++ + E G KGFGFV F+ ++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSYMQ 344
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 165 (63.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 165 (63.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 165 (63.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 165 (63.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 165 (63.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 161 (61.7 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 51/181 (28%), Positives = 84/181 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ VQ +Y G + +
Sbjct: 177 GGQWLGGRQIRTNWATRKPP-APKS-VQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
TE +RQ F PFG + +++ E KG+ F++F+ E A +A+ ++NG I G +
Sbjct: 235 TEHLMRQTFSPFGQIMEIRV-FPE----KGYSFIRFSSHESAAHAIVSVNGTT-IEGHVV 288
Query: 432 K 432
K
Sbjct: 289 K 289
Score = 119 (46.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-NL 420
++VG+L +T D +R F PFG + ++ D TG KG+GFV F DA NA+ ++
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 421 NGQLEIVGRAIKVSAVT 437
GQ + GR I+ + T
Sbjct: 177 GGQW-LGGRQIRTNWAT 192
Score = 51 (23.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF + +SA A +++G G ++
Sbjct: 244 SPFGQIMEIRVFPEK-GYSFIRFSSHESAAHAIVSVNGTTIEGHVV 288
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 149 (57.5 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 43/183 (23%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 120
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 435 AVT 437
T
Sbjct: 181 WAT 183
Score = 145 (56.1 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 49/186 (26%), Positives = 83/186 (44%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+D VF + + D+ F+ G++ D R++ D + +SKG G+V F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 314 AIA-LSGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
AI + GQ L G+ + KP A K+ + +Y G
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCT-VYCGG 220
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEI 426
+ +TE +RQ F PFG + +++ D KG+ FV+F E A +A+ ++NG I
Sbjct: 221 VTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 427 VGRAIK 432
G +K
Sbjct: 275 EGHVVK 280
Score = 104 (41.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 68 (29.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 631 --ATFMVP---QTYEA 641
AT P TYE+
Sbjct: 180 NWATRKPPAPKSTYES 195
Score = 54 (24.1 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V D G+ ++RF + +SA A +++G G ++
Sbjct: 235 SPFGQIMEIRVFPDK-GYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 149 (57.5 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 43/183 (23%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 120
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 435 AVT 437
T
Sbjct: 181 WAT 183
Score = 148 (57.2 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 49/186 (26%), Positives = 84/186 (45%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+D VF + + D+ F+ G++ D R++ D + +SKG G+V F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 314 AIA-LSGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
AI + GQ L G+ + KP A K+ + +Y G
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVSQSSPNNCT-VYCGG 220
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEI 426
+ +TE +RQ F PFG + +++ D KG+ FV+F+ E A +A+ ++NG I
Sbjct: 221 VTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFSSHESAAHAIVSVNGTT-I 274
Query: 427 VGRAIK 432
G +K
Sbjct: 275 EGHVVK 280
Score = 104 (41.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 68 (29.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 631 --ATFMVP---QTYEA 641
AT P TYE+
Sbjct: 180 NWATRKPPAPKSTYES 195
Score = 54 (24.1 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V D G+ ++RF + +SA A +++G G ++
Sbjct: 235 SPFGQIMEIRVFPDK-GYSFVRFSSHESAAHAIVSVNGTTIEGHVV 279
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 149 (57.5 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 43/183 (23%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 120
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 435 AVT 437
T
Sbjct: 181 WAT 183
Score = 145 (56.1 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 49/186 (26%), Positives = 83/186 (44%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+D VF + + D+ F+ G++ D R++ D + +SKG G+V F++
Sbjct: 103 QDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 162
Query: 314 AIA-LSGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGN 367
AI + GQ L G+ + KP A K+ + +Y G
Sbjct: 163 AIQQMGGQWLGGRQIRTNWATRKPP-APKSTYESNTKQLSYDEVVNQSSPSNCT-VYCGG 220
Query: 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEI 426
+ +TE +RQ F PFG + +++ D KG+ FV+F E A +A+ ++NG I
Sbjct: 221 VTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFVRFNSHESAAHAIVSVNGTT-I 274
Query: 427 VGRAIK 432
G +K
Sbjct: 275 EGHVVK 280
Score = 104 (41.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 68 (29.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 631 --ATFMVP---QTYEA 641
AT P TYE+
Sbjct: 180 NWATRKPPAPKSTYES 195
Score = 54 (24.1 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V D G+ ++RF + +SA A +++G G ++
Sbjct: 235 SPFGQIMEIRVFPDK-GYSFVRFNSHESAAHAIVSVNGTTIEGHVV 279
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 165 (63.1 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 50/177 (28%), Positives = 84/177 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 159 (61.0 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 44 (20.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 165 (63.1 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 51/184 (27%), Positives = 78/184 (42%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-- 315
T+F ++ A + E FS+ G V+ ++ ++ S+ +G GYV F + V A+
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 316 --ALSG----QPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
G + + + K E KN + RL + NL
Sbjct: 65 ITTFEGCKINVTIAKKKLKNKSKETRKN--ENSESPKKEPKHKKAKVADKKARLIIRNLS 122
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429
F +ED L+ VF +GTV V +P G +GF F+QF L +A AL EI GR
Sbjct: 123 FKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGR 182
Query: 430 AIKV 433
+ V
Sbjct: 183 TVAV 186
Score = 104 (41.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ +++ NL F+ E+ L +V + FG ++ V++ L +T H KG F QF E A+ L
Sbjct: 329 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLA 388
Query: 420 L------NGQLEIVGRAIKVS-AVT 437
G L++ GR +KV AVT
Sbjct: 389 AASPETEGGGLKLDGRQLKVDLAVT 413
Score = 84 (34.6 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSK--CKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
K+ + + G KS +R SSK C+ +E+VED DDDG D+ D +
Sbjct: 196 KDAQHTSVSGGKKSSERKPKESSKKSCRVEEQVEDDDDDGE-----DEEDDDTQDDEDES 250
Query: 78 RDSS 81
RDS+
Sbjct: 251 RDST 254
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 140 (54.3 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 35/82 (42%), Positives = 52/82 (63%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L+F TE+ L QVF +G V E+V + E+ +GFGFV F EDA++A+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 140 (54.3 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 26/81 (32%), Positives = 51/81 (62%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNL 420
++YVG+L +++T D+L+ F +G +E +L +D ETG KGF F+ + + A+ A++
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 421 NGQLEIVGRAIKVSAVTDQSG 441
+++ GR I+V+ + +G
Sbjct: 79 ANGIDLQGRKIRVNIARENTG 99
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 140 (54.3 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 26/81 (32%), Positives = 51/81 (62%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNL 420
++YVG+L +++T D+L+ F +G +E +L +D ETG KGF F+ + + A+ A++
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 421 NGQLEIVGRAIKVSAVTDQSG 441
+++ GR I+V+ + +G
Sbjct: 79 ANGIDLQGRKIRVNIARENTG 99
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 165 (63.1 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 51/184 (27%), Positives = 78/184 (42%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-- 315
T+F ++ A + E FS+ G V+ ++ ++ S+ +G GYV F + V A+
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 316 --ALSG----QPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
G + + + K E KN + RL + NL
Sbjct: 65 ITTFEGCKINVTIAKKKLKNKSKETRKN--ENSESPKKEPKHKKAKVADKKARLIIRNLS 122
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429
F +ED L+ VF +GTV V +P G +GF F+QF L +A AL EI GR
Sbjct: 123 FKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGR 182
Query: 430 AIKV 433
+ V
Sbjct: 183 TVAV 186
Score = 104 (41.7 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ +++ NL F+ E+ L +V + FG ++ V++ L +T H KG F QF E A+ L
Sbjct: 325 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCLA 384
Query: 420 L------NGQLEIVGRAIKVS-AVT 437
G L++ GR +KV AVT
Sbjct: 385 AASPETEGGGLKLDGRQLKVDLAVT 409
Score = 76 (31.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSK--CKSDEKVEDYDDDGHRSRGSKSRDESRN 71
K+ + + G KS +R SSK C+ +E+VED DDD DESR+
Sbjct: 196 KDAQHTSVSGGKKSSERKPKESSKKSCRVEEQVED-DDDDEDDDTQDDEDESRD 248
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 162 (62.1 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 49/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + E F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 36 DER-LKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 93
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 94 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 151
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 152 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 189
Score = 133 (51.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
+Y+ N +M +++L+++F FG V++ DE+G KGFGFV F R EDA+ A++ +N
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 84
Query: 422 GQLEIVGRAIKV 433
G+ E+ G+ I V
Sbjct: 85 GK-ELNGKQIYV 95
Score = 44 (20.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 140 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 193
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 164 (62.8 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 46/158 (29%), Positives = 79/158 (50%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
D+ + E F + G +R++ D +S +SKG G+V F A+ ++G+ + G+ V
Sbjct: 203 DDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQV 261
Query: 328 MVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV 387
V ++ +K Q LYV NL + +++LR+ F PFGT+
Sbjct: 262 YVGRAQ-KKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTI 320
Query: 388 ELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 321 TSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 157 (60.3 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 48/181 (26%), Positives = 84/181 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAEMGARAKEFTNVYIKNFGEDMDDEKL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN------LNGQLEIVGRAI 431
+++F +G +++ D++G KGFGFV F R EDA+ A++ +NG+ VGRA
Sbjct: 208 KEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 267
Query: 432 K 432
K
Sbjct: 268 K 268
Score = 44 (20.5 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 140 (54.3 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 39/144 (27%), Positives = 74/144 (51%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXX 356
SK GYV+F + A+ L+G+ L+G + ++ ++++++L +
Sbjct: 318 SKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDA--------- 368
Query: 357 XXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 416
R L+V NL + +TED+++ VFE +E V+L L++ G KG +++F +A
Sbjct: 369 ----RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVLNKEGSSKGMAYIEFKTEAEAEK 421
Query: 417 ALNLNGQLEIVGRAIKVSAVTDQS 440
AL E+ GRA+ + ++S
Sbjct: 422 ALEEKQGTEVDGRAMVIDYTGEKS 445
Score = 130 (50.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 42/150 (28%), Positives = 72/150 (48%)
Query: 285 DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXX 343
+VRL++++ SKG+ Y+EF A+ G + G+ MV EK+ +
Sbjct: 394 EVRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEKQGTEVDGR-AMVIDYTGEKSQQESQK 451
Query: 344 XXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF 403
+ L V NL + +E+ L+++F+ ++++ P + G KG+
Sbjct: 452 GGGERES----------KTLIVNNLSYAASEETLQELFKKATSIKM---PQNNQGRPKGY 498
Query: 404 GFVQFARLEDARNALNLNGQLEIVGRAIKV 433
FV+F EDA+ ALN EI GRAI++
Sbjct: 499 AFVEFPTAEDAKEALNSCNNTEIEGRAIRL 528
Score = 115 (45.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 46/183 (25%), Positives = 79/183 (43%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R+ +T+ + A E + E F +A ++ + N R KG +VEF
Sbjct: 456 RESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKE 511
Query: 314 AI-ALSGQPLLGQPVMVK---PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
A+ + + + G+ + ++ PS + N+ + L+V L
Sbjct: 512 ALNSCNNTEIEGRAIRLEFSSPSWQKGNM------------NARGGFNQQSKTLFVRGLS 559
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428
+ TE+ LR+ FE G++ ++ D +TG KGFGFV F+ EDA+ A EI G
Sbjct: 560 EDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDG 616
Query: 429 RAI 431
+
Sbjct: 617 NKV 619
Score = 57 (25.1 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 566 ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
+T EE ++E EG S I ++D S GF ++ F + + A AA+ A+
Sbjct: 561 DTTEE---TLRESFEGSISA-----RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDG 612
Query: 623 WFAGKMITATFMVPQ 637
G +T F P+
Sbjct: 613 EIDGNKVTLDFAKPK 627
Score = 54 (24.1 bits), Expect = 9.1e-09, Sum P(3) = 9.1e-09
Identities = 15/80 (18%), Positives = 36/80 (45%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKS---DEKVEDYDDDGHRS 60
+E E E+ E + ++++ VK ++ +K K+ DE+ E+ +D+
Sbjct: 170 EEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDEDEDEED 229
Query: 61 RGSKSRDESRNHDRRKERDS 80
+ DE + D + +++
Sbjct: 230 EDDEEEDEEESEDEKPVKEA 249
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
P+ +K G G K+ + S+ + DE ED ++D S +E
Sbjct: 89 PSPKKAAVVGKG-AKNGKNAKKEESE-EEDEDDEDDEEDEDEEEESDEEEE 137
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 13 VENPEPAKE---KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-RSRGSKSRDE 68
V+ P PAK K A + ED + +E E+ +D+ + K + E
Sbjct: 197 VKKPTPAKATPAKAKAESEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKE 256
Query: 69 SRN 71
N
Sbjct: 257 MAN 259
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 4 DEYEYLEKMVENPEPAKE-KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRG 62
DE E E+ E EPA K A + +K +S+E+ E+ DD+
Sbjct: 125 DEDEE-EESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEE-DDEEEDEED 182
Query: 63 SKSRDES 69
+S DE+
Sbjct: 183 DESEDEA 189
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 140 (54.3 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 39/144 (27%), Positives = 74/144 (51%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXX 356
SK GYV+F + A+ L+G+ L+G + ++ ++++++L +
Sbjct: 320 SKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDA--------- 370
Query: 357 XXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 416
R L+V NL + +TED+++ VFE +E V+L L++ G KG +++F +A
Sbjct: 371 ----RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVLNKEGSSKGMAYIEFKTEAEAEK 423
Query: 417 ALNLNGQLEIVGRAIKVSAVTDQS 440
AL E+ GRA+ + ++S
Sbjct: 424 ALEEKQGTEVDGRAMVIDYTGEKS 447
Score = 130 (50.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 42/150 (28%), Positives = 72/150 (48%)
Query: 285 DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXX 343
+VRL++++ SKG+ Y+EF A+ G + G+ MV EK+ +
Sbjct: 396 EVRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEKQGTEVDGR-AMVIDYTGEKSQQESQK 453
Query: 344 XXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF 403
+ L V NL + +E+ L+++F+ ++++ P + G KG+
Sbjct: 454 GGGERES----------KTLIVNNLSYAASEETLQELFKKATSIKM---PQNNQGRPKGY 500
Query: 404 GFVQFARLEDARNALNLNGQLEIVGRAIKV 433
FV+F EDA+ ALN EI GRAI++
Sbjct: 501 AFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 115 (45.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 46/183 (25%), Positives = 79/183 (43%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R+ +T+ + A E + E F +A ++ + N R KG +VEF
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 314 AI-ALSGQPLLGQPVMVK---PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
A+ + + + G+ + ++ PS + N+ + L+V L
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNM------------NARGGFNQQSKTLFVRGLS 561
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428
+ TE+ LR+ FE G++ ++ D +TG KGFGFV F+ EDA+ A EI G
Sbjct: 562 EDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDG 618
Query: 429 RAI 431
+
Sbjct: 619 NKV 621
Score = 57 (25.1 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 566 ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
+T EE ++E EG S I ++D S GF ++ F + + A AA+ A+
Sbjct: 563 DTTEE---TLRESFEGSISA-----RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDG 614
Query: 623 WFAGKMITATFMVPQ 637
G +T F P+
Sbjct: 615 EIDGNKVTLDFAKPK 629
Score = 54 (24.1 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 15/80 (18%), Positives = 36/80 (45%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKS---DEKVEDYDDDGHRS 60
+E E E+ E + ++++ VK ++ +K K+ DE+ E+ +D+
Sbjct: 174 EEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDEDEDEED 233
Query: 61 RGSKSRDESRNHDRRKERDS 80
+ DE + D + +++
Sbjct: 234 EDDEEEDEEESEDEKPVKEA 253
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
P+ +K G G K+ + S+ + DE ED ++D S +E
Sbjct: 93 PSPKKAAVVGKG-AKNGKNAKKEESE-EEDEDDEDDEEDEDEEEESDEEEE 141
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 13 VENPEPAKE---KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-RSRGSKSRDE 68
V+ P PAK K A + ED + +E E+ +D+ + K + E
Sbjct: 201 VKKPTPAKATPAKAKAESEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKE 260
Query: 69 SRN 71
N
Sbjct: 261 MAN 263
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 4 DEYEYLEKMVENPEPAKE-KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRG 62
DE E E+ E EPA K A + +K +S+E+ E+ DD+
Sbjct: 129 DEDEE-EESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEE-DDEEEDEED 186
Query: 63 SKSRDES 69
+S DE+
Sbjct: 187 DESEDEA 193
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 140 (54.3 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 39/144 (27%), Positives = 74/144 (51%)
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXX 356
SK GYV+F + A+ L+G+ L+G + ++ ++++++L +
Sbjct: 320 SKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDA--------- 370
Query: 357 XXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 416
R L+V NL + +TED+++ VFE +E V+L L++ G KG +++F +A
Sbjct: 371 ----RTLFVKNLPYRVTEDEMKNVFE--NALE-VRLVLNKEGSSKGMAYIEFKTEAEAEK 423
Query: 417 ALNLNGQLEIVGRAIKVSAVTDQS 440
AL E+ GRA+ + ++S
Sbjct: 424 ALEEKQGTEVDGRAMVIDYTGEKS 447
Score = 130 (50.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 42/150 (28%), Positives = 72/150 (48%)
Query: 285 DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXX 343
+VRL++++ SKG+ Y+EF A+ G + G+ MV EK+ +
Sbjct: 396 EVRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEKQGTEVDGR-AMVIDYTGEKSQQESQK 453
Query: 344 XXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF 403
+ L V NL + +E+ L+++F+ ++++ P + G KG+
Sbjct: 454 GGGERES----------KTLIVNNLSYAASEETLQELFKKATSIKM---PQNNQGRPKGY 500
Query: 404 GFVQFARLEDARNALNLNGQLEIVGRAIKV 433
FV+F EDA+ ALN EI GRAI++
Sbjct: 501 AFVEFPTAEDAKEALNSCNNTEIEGRAIRL 530
Score = 115 (45.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 46/183 (25%), Positives = 79/183 (43%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R+ +T+ + A E + E F +A ++ + N R KG +VEF
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKE 513
Query: 314 AI-ALSGQPLLGQPVMVK---PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
A+ + + + G+ + ++ PS + N+ + L+V L
Sbjct: 514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNM------------NARGGFNQQSKTLFVRGLS 561
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428
+ TE+ LR+ FE G++ ++ D +TG KGFGFV F+ EDA+ A EI G
Sbjct: 562 EDTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDG 618
Query: 429 RAI 431
+
Sbjct: 619 NKV 621
Score = 57 (25.1 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 566 ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGR 622
+T EE ++E EG S I ++D S GF ++ F + + A AA+ A+
Sbjct: 563 DTTEE---TLRESFEGSISA-----RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDG 614
Query: 623 WFAGKMITATFMVPQ 637
G +T F P+
Sbjct: 615 EIDGNKVTLDFAKPK 629
Score = 54 (24.1 bits), Expect = 9.4e-09, Sum P(3) = 9.4e-09
Identities = 15/80 (18%), Positives = 36/80 (45%)
Query: 4 DEYEYLEKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKS---DEKVEDYDDDGHRS 60
+E E E+ E + ++++ VK ++ +K K+ DE+ E+ +D+
Sbjct: 174 EEEEDDEEEDEEDDESEDEAMDTTPAPVKKPTPAKATPAKAKAESEDEEDEEDEDEDEED 233
Query: 61 RGSKSRDESRNHDRRKERDS 80
+ DE + D + +++
Sbjct: 234 EDDEEEDEEESEDEKPVKEA 253
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
P+ +K G G K+ + S+ + DE ED ++D S +E
Sbjct: 93 PSPKKAAVVGKG-AKNGKNAKKEESE-EEDEDDEDDEEDEDEEEESDEEEE 141
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 13 VENPEPAKE---KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGH-RSRGSKSRDE 68
V+ P PAK K A + ED + +E E+ +D+ + K + E
Sbjct: 201 VKKPTPAKATPAKAKAESEDEEDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKE 260
Query: 69 SRN 71
N
Sbjct: 261 MAN 263
Score = 42 (19.8 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 4 DEYEYLEKMVENPEPAKE-KETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRG 62
DE E E+ E EPA K A + +K +S+E+ E+ DD+
Sbjct: 129 DEDEE-EESDEEEEPAVPVKPAAKKSAAAVPAKKPAVVPAKQESEEEEEE-DDEEEDEED 186
Query: 63 SKSRDES 69
+S DE+
Sbjct: 187 DESEDEA 193
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 119 (46.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGH-CKGFGFVQFARLEDARNALN-L 420
LYV NL + + L ++F P G + V++ D+T C+G+GFV+ L D+ +A+N +
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443
Query: 421 NGQLEIVGRAIKVS 434
NG +++ G+ I VS
Sbjct: 444 NG-VQVGGKTISVS 456
Score = 88 (36.0 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 277 FSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAE 335
FS G++ R+++D N+ S+G G+V+F DV S AI +++G + + ++V+ + ++
Sbjct: 119 FSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSD 178
Query: 336 KN 337
N
Sbjct: 179 PN 180
Score = 81 (33.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
VF + ++ D+ + E FS G+V + +L++D + S+G G V + D S A+ +L
Sbjct: 221 VFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSL 280
Query: 318 SGQPLLG--QPVMVKPSEAE 335
+G L +P++V+ ++ E
Sbjct: 281 NGFILQDPEKPLIVRFADNE 300
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 149 (57.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 43/183 (23%), Positives = 84/183 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
+T++ + E + + FS+ G ++ ++IMD + + +VEF++ A+A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ ++G+ V V + + + ++VG+L +T +
Sbjct: 65 AMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF----HVFVGDLSPEITTE 120
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
++ F PFG + ++ D TG KG+GFV F DA NA+ G + GR I+ +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 435 AVT 437
T
Sbjct: 181 WAT 183
Score = 104 (41.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
+ LYVGNL ++TE + Q+F G + ++ +D G+ + FV+F A AL
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN-DPYCFVEFHEHRHAAAALAA 65
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQDLGANT 449
+NG+ +I+G+ +KV+ A T S +D ++T
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSSST 95
Score = 69 (29.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 23/77 (29%), Positives = 36/77 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMIT- 630
ED++ + FG++ V KD A G+ ++ F N A A + + G+W G+ I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 179
Query: 631 --ATFMVP---QTYEAK 642
AT P TYE +
Sbjct: 180 NWATRKPPAPKSTYECR 196
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 164 (62.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 52/184 (28%), Positives = 78/184 (42%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-- 315
T+F ++ A + E FS+ G V+ ++ ++ S+ +G GYV F + V A+
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 316 --ALSGQPL----LGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLH 369
G + + + K E KN + RL + NL
Sbjct: 65 ITTFEGCKIDVTVAKKKLRNKSKETRKN--ENAESPKKEPKHKKAKVADKKARLIIRNLS 122
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429
F +ED L+ VF +GTV V +P G +GF FVQF L +A AL EI GR
Sbjct: 123 FKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGR 182
Query: 430 AIKV 433
+ V
Sbjct: 183 TVAV 186
Score = 103 (41.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
+ +++ NL F+ E+ L +V + FG ++ V++ L +T H KG F QF E A+ L
Sbjct: 325 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 384
Query: 419 --NLN---GQLEIVGRAIKVS-AVT 437
+L G L++ GR +KV AVT
Sbjct: 385 AASLEAEGGGLKLDGRQLKVDLAVT 409
Score = 75 (31.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 20 KEKETANGDGNVKSEDRVRSRSSK--CKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
K+ + A+ G KS DR S K C+ +E+VED DD+ ++ +HD +E
Sbjct: 196 KDAQHASAPGVKKSSDRKPKESGKKNCRVEEQVEDSDDE----------EDDDSHDDEEE 245
Query: 78 RDSS 81
R+S+
Sbjct: 246 REST 249
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 158 (60.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 49/177 (27%), Positives = 83/177 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + + + +Y+ S G + ++ D N SKG G+V F + AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L G+ V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNGRKVFVGQFKSRKE-----------REAELGARAKEFPNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 150 (57.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 45/148 (30%), Positives = 72/148 (48%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDA 414
+ ++ + E G KGFGFV F+ E+A
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEA 346
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 159 (61.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/182 (27%), Positives = 84/182 (46%)
Query: 256 QRTVFAYQICLKADERDVYEFFSRA-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
+ T+F + + + E F VR +++ DR + RSKG G+V+F D A
Sbjct: 175 EHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRA 234
Query: 315 IA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
+ ++G +P+ + P+ +K + ++VG L +
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVA 294
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIK 432
E+ LRQVF P+G ELV + + C GFVQF A AL+ LNG ++ G++I+
Sbjct: 295 EEHLRQVFSPYG--ELVHVKIVAGKRC---GFVQFGTRASAEQALSSLNGT-QLGGQSIR 348
Query: 433 VS 434
+S
Sbjct: 349 LS 350
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 162 (62.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 44/160 (27%), Positives = 81/160 (50%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQ 325
+ D++ + F R G+V V+++ D + SKG G+V F A+ ++G+ L G+
Sbjct: 201 RMDDKTLNGLFGRFGQVLSVKVMTDEGGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGK 259
Query: 326 PVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFG 385
+ V P++ + + LYV NL + +++L++ F PFG
Sbjct: 260 HIYVGPAQKKVDR-HIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFG 318
Query: 386 TVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
T+ ++ + E G KGFGFV F+ E+A A++ +NG++
Sbjct: 319 TITSTKV-MTEGGRSKGFGFVCFSSPEEATKAVSEMNGRI 357
Score = 153 (58.9 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 52/177 (29%), Positives = 80/177 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG--SKGHGFVHFETEEAAERAIEKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N M + L
Sbjct: 159 NGMLLNDRKVFVGQFKSRKE-----------REAELGTRTKEFTNVYIKNFGDRMDDKTL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+F FG V V++ DE G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 NGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKHIYV 263
Score = 46 (21.3 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E ++ E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 308 ERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATK 361
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 162 (62.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 204 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 YV--GRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 158 (60.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 49/177 (27%), Positives = 83/177 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + + + +Y+ S G + ++ D N SKG G+V F + AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L G+ V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNGRKVFVGQFKSRKE-----------REAELGARAKEFPNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 263
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 598 SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
S GF ++ F + + A A ++GR A K
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 153 (58.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 53/194 (27%), Positives = 88/194 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +YE FS GK+ +++ D SKG G+V + D + AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEEM 157
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G+ L + V ++ K+ +Y+ N +M ++ L
Sbjct: 158 NGKLLRDSTLFVARFKSRKD-----------REAELREKPAEFTNVYIKNFGDDMDDESL 206
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAI 431
R VF +G V++ D +G K FGFV F + A+NA+ ++NGQ VGRA
Sbjct: 207 RSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQ 266
Query: 432 KVSAVTDQSGLQDL 445
K V Q+ L+++
Sbjct: 267 K--KVERQAELKEM 278
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 42/159 (26%), Positives = 76/159 (47%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D+ + FS+ G+ V+++ D S +SK G+V F + A+ ++G+ + GQ +
Sbjct: 202 DDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q +LY+ NL + ++ LR+ F FG+
Sbjct: 261 FV--GRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEFSVFGS 318
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQL 424
+ V++ + E G KGFG + F E A A+ +NG++
Sbjct: 319 ICRVKV-MQEAGQSKGFGLICFFSPEAAAKAMAEMNGRI 356
Score = 109 (43.4 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCK-GFGFVQFARLEDARNALN-L 420
LYVG+LH ++TED L + F G V +++ D H G+G+V F ++ DA+ AL +
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 421 NGQLEIVGRAIKV 433
N L I G++I++
Sbjct: 72 NFDL-IKGKSIRL 83
Score = 62 (26.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKDSAG----FVYLRFENTQSAFAAQRALHGRWFAGK 627
DMD E + SK+G+ + V KD++G F ++ F++ ++A A ++GR G+
Sbjct: 200 DMD-DESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQ 258
Query: 628 MI 629
I
Sbjct: 259 TI 260
Score = 46 (21.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + + V ++ S GF + F + ++A A ++GR K
Sbjct: 307 ETLRKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSK 360
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 157 (60.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 52/189 (27%), Positives = 87/189 (46%)
Query: 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI 315
+ TV+ + + + V+E +AG++ +V L DR ++ +G G+VEF A
Sbjct: 12 EATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYAS 71
Query: 316 AL-SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTE 374
+ +G L G+P+ V + A+K L+VGNL +TE
Sbjct: 72 RIMNGIRLYGKPIRVNKASADKQ-----------------KSVEIGAELFVGNLDPMVTE 114
Query: 375 DQLRQVFEPFGT-VELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAIK 432
L F FG V L ++ D++ KG+GFV FA E + A+ N+NGQ ++ + +
Sbjct: 115 QVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQY-LMNKQVS 173
Query: 433 VSAVTDQSG 441
V + G
Sbjct: 174 VQYAYKKDG 182
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 20/76 (26%), Positives = 46/76 (60%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D+ +F + +E+ + + FS+ G++ +V ++ DR ++RS+G G+V F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 315 I-ALSGQPLLGQPVMV 329
+ A++G+ + G+ + V
Sbjct: 64 MMAMNGKSVDGRQIRV 79
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L++G L+F ED L Q F +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V SG
Sbjct: 66 MNGK-SVDGRQIRVDQAGKSSG 86
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L++G L+F+ E+ L QVF +G + V + D ET +GFGFV F +DA++A+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V SG
Sbjct: 66 MNGKA-VDGRQIRVDQAGKSSG 86
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 105 (42.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D ++ +GF F+ F E + L
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVL 212
Score = 94 (38.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++F++ G+V D + MD N+ RS+G G++ F D SV
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKV 127
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+ L G+ + K + A K
Sbjct: 128 LDQKEHRLDGRVIDPKKAMAMK 149
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 118 (46.6 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 422 GQLEIVGRAIKVS-AVTDQS 440
+E+ GR I+V ++T ++
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
Score = 81 (33.6 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 124 FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGM 183
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 184 ELDGRRIRV 192
Score = 79 (32.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 26/75 (34%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E E E + ++ G VKSE R SRS +V + + RSR SKSR
Sbjct: 6 ENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPS-----RVSKHSESHSRSR-SKSRSR 59
Query: 69 SRNHDRRKERDSSCH 83
SR H R+ S H
Sbjct: 60 SRRHSHRRYTRSRSH 74
Score = 53 (23.7 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P++ + + +S+ R RSR + + + HR R S+SR + + RR+
Sbjct: 39 PSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHS-HRRR-SRSRSYTPEYRRRRS 96
Query: 78 RDSS 81
R S
Sbjct: 97 RSHS 100
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 110 (43.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L ++TE+QLR+ F +G +E ++LP D +T +GF FV FA E + L
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLL 173
Score = 89 (36.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++ SR G+V D + D + RS+G G+V F D SV
Sbjct: 28 DDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRV 87
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+ L+ L G+ + K ++A K
Sbjct: 88 LELTEHKLDGKLIDPKRAKAIK 109
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 118 (46.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 422 GQLEIVGRAIKVS-AVTDQS 440
+E+ GR I+V ++T ++
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
Score = 81 (33.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 124 FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGM 183
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 184 ELDGRRIRV 192
Score = 79 (32.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/75 (34%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E E E + ++ G VKSE R SRS +V + + RSR SKSR
Sbjct: 6 ENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPS-----RVSKHSESHSRSR-SKSRSR 59
Query: 69 SRNHDRRKERDSSCH 83
SR H R+ S H
Sbjct: 60 SRRHSHRRYTRSRSH 74
Score = 53 (23.7 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P++ + + +S+ R RSR + + + HR R S+SR + + RR+
Sbjct: 39 PSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHS-HRRR-SRSRSYTPEYRRRRS 96
Query: 78 RDSS 81
R S
Sbjct: 97 RSHS 100
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 161 (61.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 48/163 (29%), Positives = 81/163 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327
D++ + E F + GK V+++ D + S+G G+V + A+ ++G L G+ V
Sbjct: 204 DDQRLKELFDKYGKTLSVKVMTDPTGK-SRGFGFVSYEKHEDANKAVEEMNGTELNGKTV 262
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LY+ NL + +++LR+ F PFG+
Sbjct: 263 FV--GRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 320
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
+ ++ L+E G KGFGFV F+ E+A A+ +NG+ IVG
Sbjct: 321 ITSAKVMLEE-GRSKGFGFVCFSSPEEATKAVTEMNGR--IVG 360
Score = 149 (57.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 48/181 (26%), Positives = 80/181 (44%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + D + +Y+ FS G + +++ D N SKG +V F + AI +
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKM 159
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M + +L
Sbjct: 160 NGMLLNDRKVFVGRFKSRKE-----------REAEMGAKAKEFTNVYIKNFGDDMDDQRL 208
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN------LNGQLEIVGRAI 431
+++F+ +G V++ D TG +GFGFV + + EDA A+ LNG+ VGRA
Sbjct: 209 KELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 268
Query: 432 K 432
K
Sbjct: 269 K 269
Score = 49 (22.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKL---KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + K + E S GF ++ F + + A A ++GR K
Sbjct: 309 EKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 362
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 118 (46.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 422 GQLEIVGRAIKVS-AVTDQS 440
+E+ GR I+V ++T ++
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
Score = 81 (33.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 124 FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGM 183
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 184 ELDGRRIRV 192
Score = 79 (32.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/75 (34%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E E E + ++ G VKSE R SRS +V + + RSR SKSR
Sbjct: 6 ENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPS-----RVSKHSESHSRSR-SKSRSR 59
Query: 69 SRNHDRRKERDSSCH 83
SR H R+ S H
Sbjct: 60 SRRHSHRRYTRSRSH 74
Score = 53 (23.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P++ + + +S+ R RSR + + + HR R S+SR + + RR+
Sbjct: 39 PSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHS-HRRR-SRSRSYTPEYRRRRS 96
Query: 78 RDSS 81
R S
Sbjct: 97 RSHS 100
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 118 (46.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178
Query: 422 GQLEIVGRAIKVS-AVTDQS 440
+E+ GR I+V ++T ++
Sbjct: 179 NGMELDGRRIRVDYSITKRA 198
Score = 81 (33.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 122 FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGM 181
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 182 ELDGRRIRV 190
Score = 79 (32.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/75 (34%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E E E + ++ G VKSE R SRS +V + + RSR SKSR
Sbjct: 6 ENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPS-----RVSKHSESHSRSR-SKSRSR 59
Query: 69 SRNHDRRKERDSSCH 83
SR H R+ S H
Sbjct: 60 SRRHSHRRYTRSRSH 74
Score = 53 (23.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 26 NGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
+ + + +S + RSRS + S + HR R S+SR + + RR+ R S
Sbjct: 45 HSESHSRSRSKSRSRSRR-HSHRRYTRSRSHSHRRR-SRSRSYTPEYRRRRSRSHS 98
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 118 (46.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 422 GQLEIVGRAIKVS-AVTDQS 440
+E+ GR I+V ++T ++
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
Score = 81 (33.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 124 FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGM 183
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 184 ELDGRRIRV 192
Score = 79 (32.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/75 (34%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E E E + ++ G VKSE R SRS +V + + RSR SKSR
Sbjct: 6 ENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPS-----RVSKHSESHSRSR-SKSRSR 59
Query: 69 SRNHDRRKERDSSCH 83
SR H R+ S H
Sbjct: 60 SRRHSHRRYTRSRSH 74
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P++ + + +S+ R RSR + + + HR R S+SR + + RR+
Sbjct: 39 PSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHS-HRRR-SRSRSYTPEYRRRRS 96
Query: 78 RDSS 81
R S
Sbjct: 97 RSHS 100
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 118 (46.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178
Query: 422 GQLEIVGRAIKVS-AVTDQS 440
+E+ GR I+V ++T ++
Sbjct: 179 NGMELDGRRIRVDYSITKRA 198
Score = 81 (33.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 122 FGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGM 181
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 182 ELDGRRIRV 190
Score = 79 (32.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/75 (34%), Positives = 33/75 (44%)
Query: 10 EKMVENPEPAKEKETANGD-GNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDE 68
E E E + ++ G VKSE R SRS +V + + RSR SKSR
Sbjct: 6 ENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPS-----RVSKHSESHSRSR-SKSRSR 59
Query: 69 SRNHDRRKERDSSCH 83
SR H R+ S H
Sbjct: 60 SRRHSHRRYTRSRSH 74
Score = 53 (23.7 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 26 NGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSS 81
+ + + +S + RSRS + S + HR R S+SR + + RR+ R S
Sbjct: 45 HSESHSRSRSKSRSRSRR-HSHRRYTRSRSHSHRRR-SRSRSYTPEYRRRRSRSHS 98
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 105 (42.0 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D ++ +GF F+ F E + L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVL 142
Score = 92 (37.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329
++D+ ++F++ G+V D + MD N+ RS+G G++ F D SV + L G+ +
Sbjct: 13 KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 72
Query: 330 KPSEAEK 336
K + A K
Sbjct: 73 KKAMAMK 79
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 106 (42.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D +T +GF F+ F + + L
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVL 142
Score = 86 (35.3 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329
++D+ ++F++ G+V D + MD N+ RS+G G++ F + SV + L G+ ++
Sbjct: 13 KKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGR--LI 70
Query: 330 KPSEA 334
P +A
Sbjct: 71 DPKKA 75
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 136 (52.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 43/172 (25%), Positives = 83/172 (48%)
Query: 272 DVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL-SGQPLLGQPVMVK 330
++ + F AG V DV+++ D+ + RS+G G+V + A+ + + + G+ V V
Sbjct: 131 ELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVN 190
Query: 331 PSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVF--EPFGTVE 388
E + ++Y GNL +N+T L+ F +P G +
Sbjct: 191 FPEVPRG--GENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQP-GVLG 247
Query: 389 LVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAIKVSAVTDQ 439
+ TG +GFGF+ F E+ ++AL +NG +E+ GRA++++ +++
Sbjct: 248 AKVIYERNTGRSRGFGFISFESAENVQSALATMNG-VEVEGRALRLNLASER 298
Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
RLYVGNL + +T +L Q+F GTV VQ+ D+ T +GFGFV +E+A+ A+ +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 421 NGQLEIVGRAIKVS 434
+I GR +KV+
Sbjct: 177 FNSSQIGGRTVKVN 190
Score = 40 (19.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 598 SAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S GF ++ FE+ ++ +A ++G G+ +
Sbjct: 259 SRGFGFISFESAENVQSALATMNGVEVEGRAL 290
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D +T +GF F+ F E + L
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVL 206
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++F++ G+V D + M N+ RSKG G++ F D SV
Sbjct: 62 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKV 121
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+ L G+ + K + A K
Sbjct: 122 LDQKEHRLDGRVIDPKKAMAMK 143
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 157 (60.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 51/182 (28%), Positives = 84/182 (46%)
Query: 256 QRTVFAYQICLKADERDVYEFFSRA-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
+ TVF + + + E F V+ +++ DR + RSKG G+V F D A
Sbjct: 172 EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRA 231
Query: 315 IA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMT 373
+ ++GQ +P+ P+ +K L ++VG + ++T
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT-IFVGAVDQSVT 290
Query: 374 EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIK 432
ED L+ VF FG ELV + + C GFVQ+A A AL+ LNG ++ G++I+
Sbjct: 291 EDDLKSVFGQFG--ELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGT-QLGGQSIR 344
Query: 433 VS 434
+S
Sbjct: 345 LS 346
>UNIPROTKB|I3LJG2 [details] [associations]
symbol:I3LJG2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00690000102248
Ensembl:ENSSSCT00000023652 Uniprot:I3LJG2
Length = 385
Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 41/115 (35%), Positives = 63/115 (54%)
Query: 534 ALQVPTASVP----IFDTIGVPSECLLLKNMFDPKN-ETYEEFD-MDIKEDVEGECSKFG 587
AL P S+P I D + +P+ L L N+ D E EE++ +D+ EDV+ EC K+G
Sbjct: 262 ALCSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEELDVVEDVKEECQKYG 321
Query: 588 KLKHIFVEKDSAGF--VYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640
+ + V K++ G V++ + N + AAQ+ L GR F GK + ATF Y+
Sbjct: 322 PVVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYK 376
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 155 (59.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 48/189 (25%), Positives = 87/189 (46%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
R +F +C + E + ++ + GK+ D +I D +S+RS+G G+V F V V A+A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+ G+ V A K +V ++L+VG + + TE
Sbjct: 81 ARPHSIDGRVV------ASKRVVPREESGKPGACVTT-------KKLFVGGIKEDTTERH 127
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436
LR FE +GT++ +++ + ++G FGFV F D + + L I G ++
Sbjct: 128 LRDYFERYGTIDAIEI-IRQSGRKTAFGFVTFDD-HDPVDKIVLQKYHTINGHHAQLEKA 185
Query: 437 TDQSGLQDL 445
+ G+Q++
Sbjct: 186 LSRQGMQEV 194
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 155 (59.6 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 48/189 (25%), Positives = 87/189 (46%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
R +F +C + E + ++ + GK+ D +I D +S+RS+G G+V F V V A+A
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQ 376
+ G+ V A K +V ++L+VG + + TE
Sbjct: 81 ARPHSIDGRVV------ASKRVVPREESGKPGACVTT-------KKLFVGGIKEDTTERH 127
Query: 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436
LR FE +GT++ +++ + ++G FGFV F D + + L I G ++
Sbjct: 128 LRDYFERYGTIDAIEI-IRQSGRKTAFGFVTFDD-HDPVDKIVLQKYHTINGHHAQLEKA 185
Query: 437 TDQSGLQDL 445
+ G+Q++
Sbjct: 186 LSRQGMQEV 194
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 159 (61.0 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + + F + G V+++ D S +SKG G+V F A+ ++G+ L G+ +
Sbjct: 172 DER-LKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 229
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 230 YV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 287
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 288 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 325
Score = 136 (52.9 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 46/157 (29%), Positives = 74/157 (47%)
Query: 279 RAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKN 337
R +R ++ D N SKG G+V F + AI ++G L + V V ++ K
Sbjct: 89 RDPSLRKSGVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 146
Query: 338 LVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDET 397
+Y+ N +M +++L+ +F FG V++ DE+
Sbjct: 147 -----------REAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 195
Query: 398 GHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKV 433
G KGFGFV F R EDA+ A++ +NG+ E+ G+ I V
Sbjct: 196 GKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQIYV 231
Score = 44 (20.5 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 577 EDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
E + E S FG + V + S GF ++ F + + A A ++GR A K
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 329
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 103 (41.3 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D + +GF F+ F E + L
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Score = 94 (38.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++F++ G+V D + MD N+ RS+G G++ F D SV
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+ L G+ + K + A K
Sbjct: 128 LDQKEHRLDGRVIDPKKAMAMK 149
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 103 (41.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D + +GF F+ F E + L
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Score = 94 (38.1 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++F++ G+V D + MD N+ RS+G G++ F D SV
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+ L G+ + K + A K
Sbjct: 128 LDQKEHRLDGRVIDPKKAMAMK 149
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 157 (60.3 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 43/152 (28%), Positives = 74/152 (48%)
Query: 293 NSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXX 352
N+ ++KG Y+ F +V + + LS L G+ +++K SE
Sbjct: 178 NAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSE-------NYSGRPDKDDLV 230
Query: 353 XXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP-LDETGHCKGFGFVQFARL 411
R L+VGNL F++T+D LR+ F+ G + +++ +++G CKGF F+ F
Sbjct: 231 AMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNE 290
Query: 412 EDARNALNLNGQLEIVGRAIKVSAVTDQSGLQ 443
E + NAL +I GR +++ D+S Q
Sbjct: 291 EGSTNALKDKSCRKIAGRPLRMEYGEDRSKRQ 322
Score = 40 (19.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 41 SSKCKSDEK-VEDYDDDGHRSRGSKSRDESRNHD 73
++K D K +E+Y +D + + S +++ +
Sbjct: 67 NAKYNIDPKSIEEYKEDAEKKKSGASEKDAQGEE 100
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 155 (59.6 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 104 (41.7 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++++VG L+ TE+++R+ F FG +E ++LP+D ++ +GF F+ F E + L
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 419 ----NLNGQLEIVGR 429
N++G + G+
Sbjct: 239 KKYHNVSGTKDTSGK 253
Score = 96 (38.9 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++FS+ G+V D + MD N+ RS+G G++ F + V
Sbjct: 93 DAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKV 152
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+A L G+ + K + A K
Sbjct: 153 LAQKEHRLDGRQIDPKKAMAMK 174
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 150 (57.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 45/167 (26%), Positives = 77/167 (46%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + + + +Y+ S G + ++ D N SKG G+V F + AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L G+ V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNGRKVFVGQFKSRKE-----------REAELGARAKEFPNVYIKNFGEDMDDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQ 423
+ +F FG V++ DE+G KGFGFV F R EDA+ A++ +NG+
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 87 (35.7 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LN 421
++V NL ++ L FG + + DE G KG+GFV F E A A+ +N
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKMN 159
Query: 422 GQLEIVGRAIKVSAVTDQSGLQ-DLGA 447
G L + GR + V + + +LGA
Sbjct: 160 GML-LNGRKVFVGQFKSRKEREAELGA 185
Score = 71 (30.1 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +YE FS AG + +R+ D + S YV F A+ ++ + G+PV
Sbjct: 24 EAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVR 83
Query: 329 VKPSEAEKNL 338
+ S+ + +L
Sbjct: 84 IMWSQRDPSL 93
Score = 46 (21.3 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 572 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGR 622
DMD E ++ KFG + V D S GF ++ FE + A A ++G+
Sbjct: 201 DMD-DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 146 (56.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
R ++VGN+ + TE+QL+ +F G V +L D ETG KG+GF ++ E A +A+
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 419 NLNGQLEIVGRAIKVSAVTDQSGLQDL 445
NLNG+ E GRA++V + ++L
Sbjct: 76 NLNGR-EFSGRALRVDNAASEKNKEEL 101
Score = 115 (45.5 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R R+VF I +A E + + FS G V RL+ DR + + KG G+ E+ D +
Sbjct: 13 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 72
Query: 314 AIA-LSGQPLLGQPVMVKPSEAEKN 337
A+ L+G+ G+ + V + +EKN
Sbjct: 73 AMRNLNGREFSGRALRVDNAASEKN 97
Score = 54 (24.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 515 LVPPLVQGTVPTHPGQLGTALQVP 538
L+ P +QG VP PGQ+ A+Q P
Sbjct: 249 LMQPPMQGGVPA-PGQMAAAVQGP 271
Score = 40 (19.1 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 514 TLVPPLVQGTVPTHPG 529
T VPPL+ G PG
Sbjct: 195 TSVPPLIPGNQQAVPG 210
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 155 (59.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 155 (59.6 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 140 (54.3 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 55/183 (30%), Positives = 81/183 (44%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLI-MDRNSRRSKGVGYVEFYDVMSVPMAI 315
+T+FA + + D+ FF AG+V DVRL D S KG G++EF A+
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS--FKGYGHIEFASPEEAQKAL 441
Query: 316 ALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ LLG+ V + + E+ + R +YV ++ ED
Sbjct: 442 EMNGKLLLGRDVRLDLAN-ERGTPRNSNPGRKGEGSQS-------RTIYVRGFSSSLGED 493
Query: 376 Q----LRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 430
+ LR F G V V +P D ETG +GF ++ D AL L+G EI G
Sbjct: 494 EIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQLSGS-EIGGGN 550
Query: 431 IKV 433
I V
Sbjct: 551 IHV 553
Score = 122 (48.0 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNL 420
+ L+ GNL + + + F+ G V V+L + G KG+G ++FA E+A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 421 NGQLEIVGRAIKVSAVTDQ 439
NG+L ++GR +++ ++
Sbjct: 444 NGKL-LLGRDVRLDLANER 461
Score = 64 (27.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 12 MVENPEPA-KEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESR 70
+V+N +PA K+ ++ D + + D + + K K K + S ++ES+
Sbjct: 286 VVKNAKPAAKDSSSSEEDSDEEESDDEKPPTKKAKVSSKTSKQESSSDESSDESDKEESK 345
Query: 71 NHD-RRKERDS 80
+ K++DS
Sbjct: 346 DEKVTPKKKDS 356
Score = 50 (22.7 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 10 EKMVENPEPAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDD 55
EK E P K + +++ + E++ + SK K + E+ DD
Sbjct: 52 EK-AEKTVPKKVESSSSDASDSDEEEKTKETPSKLKDESSSEEEDD 96
Score = 44 (20.5 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 574 DIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYL 604
+IK+++ SK G++ + V D S GF Y+
Sbjct: 494 EIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 42 (19.8 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 2 DFDEYEYLEKMVENPEPAKEKETANGDGNVKSEDRV---RSRSSKCKSDEKVEDY--DDD 56
D + + EK E P K++ ++ + + S++ + + R K KVE DDD
Sbjct: 68 DASDSDEEEKTKETPSKLKDESSSEEEDDSSSDEEIAPAKKRPEPIKK-AKVESSSSDDD 126
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 15/78 (19%), Positives = 33/78 (42%)
Query: 9 LEKMVENPEPAKEKETANGDGNVKSEDRVRSRSS-----KCKSDEKVEDYDDDGHRSRGS 63
++K E AK + +++ DG+ E+ ++ K SDE D + + + +
Sbjct: 196 MKKQTAVLEKAKAESSSSDDGSSSDEEPTPAKKEPIVVKKDSSDESSSDEETPVVKKKPT 255
Query: 64 KSRDESRNHDRRKERDSS 81
+++ E +SS
Sbjct: 256 TVVKDAKAESSSSEEESS 273
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 117 (46.2 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-NL 420
L V L TE LR+VF +G + V + D+ TG +GF FV F R++D++ A+ +
Sbjct: 123 LGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHA 182
Query: 421 NGQLEIVGRAIKVS-AVTDQS 440
NG +E+ GR I+V ++T ++
Sbjct: 183 NG-MELDGRRIRVDYSITKRA 202
Score = 81 (33.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 262 YQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ 320
+ + L ERD+ E FSR G + V ++ D+ + RS+G +V F + A+ +G
Sbjct: 126 FGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGM 185
Query: 321 PLLGQPVMV 329
L G+ + V
Sbjct: 186 ELDGRRIRV 194
Score = 77 (32.2 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 19 AKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKER 78
++ K A VKSE R SRS + + + RSR SKSR SR H R+
Sbjct: 16 SQSKSPAGSPARVKSESRSGSRSPS-----RASKHSESHSRSR-SKSRSRSRRHSHRRYT 69
Query: 79 DSSCH 83
S H
Sbjct: 70 RSRSH 74
Score = 54 (24.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 18 PAKEKETANGDGNVKSEDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKE 77
P++ + + +S+ R RSR + + + R S+SR + + RR+
Sbjct: 39 PSRASKHSESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHSHRRRSRSRSYTPEYRRRRS 98
Query: 78 RDSS 81
R S
Sbjct: 99 RSHS 102
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKV 433
+NG+ + GR I+V
Sbjct: 67 MNGK-SVDGRQIRV 79
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 20/76 (26%), Positives = 46/76 (60%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D+ +F + +E+ + + FS+ G++ +V ++ DR ++RS+G G+V F ++ A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 315 I-ALSGQPLLGQPVMV 329
+ A++G+ + G+ + V
Sbjct: 64 MMAMNGKSVDGRQIRV 79
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 366 GNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-NLNGQ 423
GN+ + TE+QL+ +F G V +L D ETG KG+GF ++ E A +A+ NLNG+
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 424 LEIVGRAIKVSAVTDQSGLQDL 445
E GRA++V + ++L
Sbjct: 62 -EFSGRALRVDNAASEKNKEEL 82
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 267 KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325
+A E + + FS G V RL+ DR + + KG G+ E+ D + A+ L+G+ G+
Sbjct: 7 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 66
Query: 326 PVMVKPSEAEKN 337
+ V + +EKN
Sbjct: 67 ALRVDNAASEKN 78
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 134 (52.2 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L+VG L + + L+Q F FG V + D ETG +GFGFV F+ + A NA+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 420 LNGQLEIVGRAIKVSAVTDQS 440
++G+ E+ GR I+V+ T++S
Sbjct: 96 MDGK-ELNGRQIRVNLATERS 115
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 151 (58.2 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 40/181 (22%), Positives = 83/181 (45%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
+ +R V+ + + ++ EF + G V + ++ N SKG +E+
Sbjct: 74 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGL-SKGCAIIEYSTAEEART 132
Query: 314 AI-ALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
AI LS Q +G+ V ++ + E+N + R+L+VGNL +N+
Sbjct: 133 AIKTLSNQKFMGRLVYIR-EDREQN-ARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNV 190
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
L+ +F G+V + +++ G +G G V + +++A +A+ + + +GR ++
Sbjct: 191 RWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLE 250
Query: 433 V 433
V
Sbjct: 251 V 251
Score = 48 (22.0 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 598 SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 633
S GF ++FEN A ++ L+G + G+ + ++
Sbjct: 349 SKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSY 384
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 144 (55.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 41/163 (25%), Positives = 71/163 (43%)
Query: 287 RLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXX 346
R+ + + + KG YV+ V + LS L G+ +++K + + + +
Sbjct: 142 RVNIPKKGNQIKGFAYVDVPSSSHVETIVGLSESILNGRKLLIKDANSFEGRPEQSKSDA 201
Query: 347 XXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP-LDETGHCKGFGF 405
R L+VGNL F+ TED L + F G + +++ +TG CKGF F
Sbjct: 202 TQSGGINSSNPPS-RILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAF 260
Query: 406 VQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
+ F E A AL ++ R +++ D+S + AN
Sbjct: 261 IDFKDEEGATTALKSKLTKMLINRKLRMEYGEDRSKRRPKRAN 303
Score = 53 (23.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 9 LEKMV-ENPEPAKEKETANGDGNVKSED 35
LEK+ +NP P + ET+ D N SED
Sbjct: 63 LEKLARKNPSP--KPETSTNDNNENSED 88
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 144 (55.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 41/163 (25%), Positives = 71/163 (43%)
Query: 287 RLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXX 346
R+ + + + KG YV+ V + LS L G+ +++K + + + +
Sbjct: 142 RVNIPKKGNQIKGFAYVDVPSSSHVETIVGLSESILNGRKLLIKDANSFEGRPEQSKSDA 201
Query: 347 XXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP-LDETGHCKGFGF 405
R L+VGNL F+ TED L + F G + +++ +TG CKGF F
Sbjct: 202 TQSGGINSSNPPS-RILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAF 260
Query: 406 VQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448
+ F E A AL ++ R +++ D+S + AN
Sbjct: 261 IDFKDEEGATTALKSKLTKMLINRKLRMEYGEDRSKRRPKRAN 303
Score = 53 (23.7 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 9 LEKMV-ENPEPAKEKETANGDGNVKSED 35
LEK+ +NP P + ET+ D N SED
Sbjct: 63 LEKLARKNPSP--KPETSTNDNNENSED 88
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 160 (61.4 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
+F + D + +Y+ FS G + +++ D N SKG G+V F + AI +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G L + V V ++ K +Y+ N +M +++L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKE-----------REAELGARAKEFTNVYIKNFGDDMNDERL 207
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN------LNGQLEIVGRAI 431
+++F +G V++ D+ G KGFGFV F R EDA+ A++ +NG+ VGRA
Sbjct: 208 KEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQ 267
Query: 432 K 432
K
Sbjct: 268 K 268
Score = 158 (60.7 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 48/159 (30%), Positives = 79/159 (49%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPV 327
DER + E F + G V+++ D N + SKG G+V F A+ ++G+ + G+ +
Sbjct: 204 DER-LKEMFGKYGPALSVKVMTDDNGK-SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Query: 328 MVKPSEAEKNLV-QXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGT 386
V A+K + Q LYV NL + +++LR+ F PFGT
Sbjct: 262 FV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGT 319
Query: 387 VELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+ ++ + E G KGFGFV F+ E+A A+ +NG++
Sbjct: 320 ITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 39 (18.8 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 598 SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
S GF ++ F + + A A ++GR A K
Sbjct: 332 SKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 151 (58.2 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
V+ + + D+ F GK+ ++M +SKG G+V F + A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAARAVESL 275
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQL 377
+G + V ++ +K+ + LYV NL ++++++L
Sbjct: 276 NGHKFDDKEWYVGRAQ-KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
+++F PFGTV ++ D G KG GFV FA E+A A++ L+G++
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKM 382
Score = 133 (51.9 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 43/156 (27%), Positives = 66/156 (42%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329
+ +++ F + G V VR+ D +RRS G GYV F + AI Q L P+
Sbjct: 49 DSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI----QELNYIPLYG 104
Query: 330 KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVEL 389
KP +++ NL ++ L F FG +
Sbjct: 105 KPIRV------------MYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 390 VQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQL 424
++ +D +G KG+GFVQ+A E A+ A+ LNG L
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGML 188
Score = 116 (45.9 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN 421
LYVG+L FN+T+ QL F GTV V++ D T G+G+V F +DA A+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 422 GQLEIVGRAIKV 433
+ + G+ I+V
Sbjct: 98 NYIPLYGKPIRV 109
Score = 71 (30.1 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 577 EDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627
+D++ ++GK+ V KD S GF ++ FEN A A +L+G F K
Sbjct: 229 DDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 154 (59.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 159 GGQWLGGRQIRTNWATRKPP-APKS-TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 217 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 270
Query: 432 K 432
K
Sbjct: 271 K 271
Score = 136 (52.9 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 46/184 (25%), Positives = 85/184 (46%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
RT++ + E + + FS+ G + ++I + S + +VEFY+ A+A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ +LG+ V V + + + ++VG+L +T +
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKDTSNHF---------------HVFVGDLSPEITTE 111
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAIKV 433
++ F PFG + ++ D TG KG+GFV F DA NA+ ++ GQ + GR I+
Sbjct: 112 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW-LGGRQIRT 170
Query: 434 SAVT 437
+ T
Sbjct: 171 NWAT 174
Score = 101 (40.6 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
R LYVGNL ++TE + Q+F G + ++ + T + + FV+F DA AL
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-DPYCFVEFYEHRDAAAALAA 67
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQD 444
+NG+ +I+G+ +KV+ A T S +D
Sbjct: 68 MNGR-KILGKEVKVNWATTPSSQKKD 92
Score = 66 (28.3 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
ED++ + FGK+ V KD A G+ ++ F N A A + G+W G+ I
Sbjct: 111 EDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Score = 49 (22.3 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 226 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 154 (59.3 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 159 GGQWLGGRQIRTNWATRKPP-APKS-TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 217 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 270
Query: 432 K 432
K
Sbjct: 271 K 271
Score = 136 (52.9 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 46/184 (25%), Positives = 85/184 (46%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
RT++ + E + + FS+ G + ++I + S + +VEFY+ A+A
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 317 -LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTED 375
++G+ +LG+ V V + + + ++VG+L +T +
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKDTSNHF---------------HVFVGDLSPEITTE 111
Query: 376 QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAIKV 433
++ F PFG + ++ D TG KG+GFV F DA NA+ ++ GQ + GR I+
Sbjct: 112 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW-LGGRQIRT 170
Query: 434 SAVT 437
+ T
Sbjct: 171 NWAT 174
Score = 101 (40.6 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 30/86 (34%), Positives = 49/86 (56%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
R LYVGNL ++TE + Q+F G + ++ + T + + FV+F DA AL
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN-DPYCFVEFYEHRDAAAALAA 67
Query: 420 LNGQLEIVGRAIKVS-AVTDQSGLQD 444
+NG+ +I+G+ +KV+ A T S +D
Sbjct: 68 MNGR-KILGKEVKVNWATTPSSQKKD 92
Score = 66 (28.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 577 EDVEGECSKFGKLKHIFVEKDSA-----GFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
ED++ + FGK+ V KD A G+ ++ F N A A + G+W G+ I
Sbjct: 111 EDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 168
Score = 49 (22.3 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 226 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 155 (59.6 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 47/182 (25%), Positives = 86/182 (47%)
Query: 258 TVFAYQICLKADERDVYEFFS-RAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316
++F + + ++E FS + V+ ++++D N+ RSKG G+V F D A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 317 -LSGQPLLGQPVMVKPSEAEK-NLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTE 374
++G + + + P+ K N Q ++VG L ++T+
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 375 DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGR-AIK 432
+ L+Q F FG + V++P+ KG GFVQF +A AL LNG ++G+ ++
Sbjct: 320 EDLKQPFSEFGEIVSVKIPVG-----KGCGFVQFVNRPNAEEALEKLNGT--VIGKQTVR 372
Query: 433 VS 434
+S
Sbjct: 373 LS 374
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 175 GGQWLGGRQIRTNWATRKPP-APKS-TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 232
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 233 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 286
Query: 432 K 432
K
Sbjct: 287 K 287
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 67
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 113
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 114 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 172
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 173 HMGGQW-LGGRQIRTNWAT 190
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 242 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 286
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 160 (61.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F QI DE+D+ F GK+ ++ ++ DR + KG ++ + + S A
Sbjct: 52 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Query: 315 -IALSGQ---PLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHF 370
AL Q P + +P+ VKP+++E R+L+VG L+
Sbjct: 112 QSALHEQKTLPGMNRPIQVKPADSESR----------GGSSCLRQPPSQDRKLFVGMLNK 161
Query: 371 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
+ED +R++FE FG +E + G+ KG FV+++ +A+ A+N L+G + G
Sbjct: 162 QQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPG 220
Score = 38 (18.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 601 FVYLRFENTQSAFAAQRALHG 621
F ++ F+N SA A +A++G
Sbjct: 444 FGFVSFDNPASAQTAIQAMNG 464
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 160 (61.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F QI DE+D+ F GK+ ++ ++ DR + KG ++ + + S A
Sbjct: 52 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Query: 315 -IALSGQ---PLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHF 370
AL Q P + +P+ VKP+++E R+L+VG L+
Sbjct: 112 QSALHEQKTLPGMNRPIQVKPADSESR----------GGSSCLRQPPSQDRKLFVGMLNK 161
Query: 371 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
+ED +R++FE FG +E + G+ KG FV+++ +A+ A+N L+G + G
Sbjct: 162 QQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPG 220
Score = 38 (18.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 601 FVYLRFENTQSAFAAQRALHG 621
F ++ F+N SA A +A++G
Sbjct: 444 FGFVSFDNPASAQTAIQAMNG 464
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 160 (61.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 49/179 (27%), Positives = 86/179 (48%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F QI DE+D+ F GK+ ++ ++ DR + KG ++ + + S A
Sbjct: 52 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Query: 315 -IALSGQ---PLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHF 370
AL Q P + +P+ VKP+++E R+L+VG L+
Sbjct: 112 QSALHEQKTLPGMNRPIQVKPADSESR----------GGSSCLRQPPSQDRKLFVGMLNK 161
Query: 371 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVG 428
+ED +R++FE FG +E + G+ KG FV+++ +A+ A+N L+G + G
Sbjct: 162 QQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPG 220
Score = 38 (18.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 601 FVYLRFENTQSAFAAQRALHG 621
F ++ F+N SA A +A++G
Sbjct: 444 FGFVSFDNPASAQTAIQAMNG 464
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
VF + + D+ F+ GK+ D R++ D + +SKG G+V FY+ + AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 318 SGQPLLGQPVMV-----KPSEAEKNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNM 372
GQ L G+ + KP A K+ Q +Y G + +
Sbjct: 176 GGQWLGGRQIRTNWATRKPP-APKS-TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL-NLNGQLEIVGRAI 431
T+ +RQ F PFG + +++ E KG+ FV+F+ E A +A+ ++NG I G +
Sbjct: 234 TDQLMRQTFSPFGQIMEIRV-FPE----KGYSFVRFSTHESAAHAIVSVNGTT-IEGHVV 287
Query: 432 K 432
K
Sbjct: 288 K 288
Score = 125 (49.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/199 (25%), Positives = 91/199 (45%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRR-SKGVGY------------ 302
RT++ + E + + FS+ G + ++I ++ +SRR + VG+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 303 -VEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXXXXXXXXXXXXX 360
VEFY+ A+A ++G+ +LG+ V V + + +
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF-------------- 114
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL- 418
++VG+L +T + ++ F PFG + ++ D TG KG+GFV F DA NA+
Sbjct: 115 -HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 419 NLNGQLEIVGRAIKVSAVT 437
++ GQ + GR I+ + T
Sbjct: 174 HMGGQW-LGGRQIRTNWAT 191
Score = 49 (22.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629
S FG++ I V + G+ ++RF +SA A +++G G ++
Sbjct: 243 SPFGQIMEIRVFPEK-GYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/82 (40%), Positives = 49/82 (59%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN- 419
+L VG L F+ E L QVF +G + V + D ET +GFGFV F ++DA++A+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 420 LNGQLEIVGRAIKVSAVTDQSG 441
+NG+ + GR I+V DQ+G
Sbjct: 67 MNGK-SVDGRQIRV----DQAG 83
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ LYVG++ + TED LR++F GTV V + D ETG KG G+V+ E+A+ A+
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 420 -LNGQLEIVGRAIKVSAVTDQ 439
L+G L + R I VS Q
Sbjct: 63 TLDGAL-LRNRVITVSVARPQ 82
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN 419
+ LYVG++ + TED LR++F GTV V + D ETG KG G+V+ E+A+ A+
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 420 -LNGQLEIVGRAIKVSAVTDQ 439
L+G L + R I VS Q
Sbjct: 63 TLDGAL-LRNRVITVSVARPQ 82
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 154 (59.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 19 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 77
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 78 RGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 137
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 138 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 175
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 153 (58.9 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 40/129 (31%), Positives = 68/129 (52%)
Query: 291 DRNSR-RSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQXXXXXXXXX 349
D++SR ++KG YV+F ++ A+ LS Q + G+ V++K ++ K +
Sbjct: 111 DKSSRAQNKGFAYVDFSTPKALEEALGLSEQLVSGRRVLIKDAKNYKGRPEKSQDDGNNA 170
Query: 350 XXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP-LDETGHCKGFGFVQF 408
+RL+VGNL F+ T++ L + F GTV V + ++G CKG+ +V+F
Sbjct: 171 PTSSGRPPS--KRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEF 228
Query: 409 ARLEDARNA 417
LE A+ A
Sbjct: 229 EDLEAAKTA 237
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 154 (59.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 87
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 88 RGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 148 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 185
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 154 (59.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 87
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 88 RGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 148 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 185
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 103 (41.3 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
++++VG L+ TE+++R+ F FG +E ++LP+D + +GF F+ F E + L
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Score = 94 (38.1 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F + ++D+ ++F++ G+V D + MD N+ RS+G G++ F D SV
Sbjct: 68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127
Query: 315 IALSGQPLLGQPVMVKPSEAEK 336
+ L G+ + K + A K
Sbjct: 128 LDQKEHRLDGRVIDPKKAMAMK 149
>UNIPROTKB|E1BCC3 [details] [associations]
symbol:UHMK1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0046825 "regulation of protein export from
nucleus" evidence=IEA] [GO:0046777 "protein autophosphorylation"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0032839 "dendrite cytoplasm"
evidence=IEA] [GO:0031175 "neuron projection development"
evidence=IEA] [GO:0030424 "axon" evidence=IEA] [GO:0007050 "cell
cycle arrest" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000719 InterPro:IPR011009 InterPro:IPR012677
Pfam:PF00069 PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360
GO:GO:0005524 GO:GO:0005634 GO:GO:0030424 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.70.330 GO:GO:0046777 GO:GO:0007050
GO:GO:0003676 GO:GO:0032839 GO:GO:0031175 GO:GO:0043021
GO:GO:0045948 GO:GO:0046825 GO:GO:0071598
GeneTree:ENSGT00690000102248 CTD:127933 KO:K08877 OMA:YGVFTNH
EMBL:DAAA02006926 EMBL:DAAA02006927 IPI:IPI00718633
RefSeq:NP_001192514.1 UniGene:Bt.112437 ProteinModelPortal:E1BCC3
Ensembl:ENSBTAT00000016871 GeneID:538770 KEGG:bta:538770
NextBio:20877567 Uniprot:E1BCC3
Length = 419
Score = 154 (59.3 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 534 ALQVPTASVP----IFDTIGVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGK 588
AL P S+P I D + +P+ L L N+ D E EE++ D+ EDV+ EC K+G
Sbjct: 298 ALCSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYE-DVVEDVKEECQKYGP 356
Query: 589 LKHIFVEKDSAGF--VYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640
+ + V K++ G V++ + N + AAQ+ L GR F GK + ATF Y+
Sbjct: 357 VVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>UNIPROTKB|E2RFD1 [details] [associations]
symbol:UHMK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071598 "neuronal ribonucleoprotein granule"
evidence=IEA] [GO:0046825 "regulation of protein export from
nucleus" evidence=IEA] [GO:0046777 "protein autophosphorylation"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0032839 "dendrite cytoplasm"
evidence=IEA] [GO:0031175 "neuron projection development"
evidence=IEA] [GO:0030424 "axon" evidence=IEA] [GO:0007050 "cell
cycle arrest" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000719 InterPro:IPR011009 InterPro:IPR012677
Pfam:PF00069 PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360
GO:GO:0005524 GO:GO:0005634 GO:GO:0030424 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.70.330 GO:GO:0046777 GO:GO:0007050
GO:GO:0003676 GO:GO:0032839 GO:GO:0031175 GO:GO:0043021
GO:GO:0045948 GO:GO:0046825 GO:GO:0071598
GeneTree:ENSGT00690000102248 CTD:127933 KO:K08877 OMA:YGVFTNH
EMBL:AAEX03018419 EMBL:AAEX03018420 RefSeq:XP_536143.3
ProteinModelPortal:E2RFD1 Ensembl:ENSCAFT00000020791 GeneID:478986
KEGG:cfa:478986 Uniprot:E2RFD1
Length = 419
Score = 154 (59.3 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 534 ALQVPTASVP----IFDTIGVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGK 588
AL P S+P I D + +P+ L L N+ D E EE++ D+ EDV+ EC K+G
Sbjct: 298 ALCSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYE-DVVEDVKEECQKYGP 356
Query: 589 LKHIFVEKDSAGF--VYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640
+ + V K++ G V++ + N + AAQ+ L GR F GK + ATF Y+
Sbjct: 357 VVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>UNIPROTKB|Q8TAS1 [details] [associations]
symbol:UHMK1 "Serine/threonine-protein kinase Kist"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0018105
"peptidyl-serine phosphorylation" evidence=ISS;IDA] [GO:0016740
"transferase activity" evidence=IC] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004674 "protein serine/threonine kinase
activity" evidence=IDA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0046777 "protein autophosphorylation" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0007050 "cell cycle arrest"
evidence=IMP] [GO:0046825 "regulation of protein export from
nucleus" evidence=IDA] [GO:0045948 "positive regulation of
translational initiation" evidence=ISS] [GO:0032839 "dendrite
cytoplasm" evidence=ISS] [GO:0030424 "axon" evidence=ISS]
[GO:0031175 "neuron projection development" evidence=ISS]
[GO:0043021 "ribonucleoprotein complex binding" evidence=ISS]
[GO:0071598 "neuronal ribonucleoprotein granule" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000719 InterPro:IPR011009
InterPro:IPR012677 Pfam:PF00069 PROSITE:PS00107 PROSITE:PS00108
PROSITE:PS50011 PROSITE:PS50102 SMART:SM00360 GO:GO:0005524
GO:GO:0005634 eggNOG:COG0515 GO:GO:0030424 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.70.330 EMBL:CH471067 GO:GO:0046777
GO:GO:0007050 GO:GO:0018105 GO:GO:0003723 GO:GO:0032839
GO:GO:0031175 GO:GO:0043021 GO:GO:0045948 GO:GO:0046825
GO:GO:0071598 EMBL:AJ536197 EMBL:AK292369 EMBL:AL359699
EMBL:BC014917 EMBL:BC026046 IPI:IPI00163376 IPI:IPI00220575
RefSeq:NP_653225.2 RefSeq:NP_787062.1 UniGene:Hs.127310
ProteinModelPortal:Q8TAS1 SMR:Q8TAS1 IntAct:Q8TAS1
MINT:MINT-7241640 STRING:Q8TAS1 PhosphoSite:Q8TAS1 DMDM:24211880
PRIDE:Q8TAS1 DNASU:127933 Ensembl:ENST00000489294
Ensembl:ENST00000538489 GeneID:127933 KEGG:hsa:127933
UCSC:uc001gcc.2 UCSC:uc009wuu.2 CTD:127933 GeneCards:GC01P162467
HGNC:HGNC:19683 MIM:608849 neXtProt:NX_Q8TAS1 PharmGKB:PA134974001
HOGENOM:HOG000013166 HOVERGEN:HBG056149 InParanoid:Q8TAS1 KO:K08877
OMA:YGVFTNH OrthoDB:EOG4X6C8F PhylomeDB:Q8TAS1 ChiTaRS:UHMK1
GenomeRNAi:127933 NextBio:82204 ArrayExpress:Q8TAS1 Bgee:Q8TAS1
CleanEx:HS_UHMK1 Genevestigator:Q8TAS1 GermOnline:ENSG00000152332
Uniprot:Q8TAS1
Length = 419
Score = 154 (59.3 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 41/114 (35%), Positives = 62/114 (54%)
Query: 534 ALQVPTASVP----IFDTIGVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGK 588
AL P S+P I D + +P+ L L N+ D E EE++ D+ EDV+ EC K+G
Sbjct: 298 ALCSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYE-DVVEDVKEECQKYGP 356
Query: 589 LKHIFVEKDSAGF--VYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640
+ + V K++ G V++ + N + AAQ+ L GR F GK + ATF Y+
Sbjct: 357 VVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYK 410
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 138 (53.6 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALN 419
R +YVGN+ + T D+L F G V V +P + TGH KGF +++F+ E R A+
Sbjct: 66 RSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMA 125
Query: 420 LNGQLEIVGRAIKVS 434
L+ L GR IKVS
Sbjct: 126 LDETL-FRGRVIKVS 139
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 107 (42.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
+ + +F I + + D+ F++ G+V ++ DR + RS+G +VEF +A
Sbjct: 27 EDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Query: 315 IALSGQPLLGQPVMVKPSEAEKN 337
+A Q + G+ V VKP+++ +N
Sbjct: 87 LAAREQTIKGKSVEVKPAKSREN 109
Score = 88 (36.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNA 417
++++VG L + +E LR FE FG V+ ++ P D +T + F F+ F E A A
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 109 (43.4 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN- 419
R+L+VG L+ +ED +R++FE FG +E + G+ KG FV+++ +A+ A+N
Sbjct: 141 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINA 200
Query: 420 LNGQLEIVG 428
L+G + G
Sbjct: 201 LHGSQTMPG 209
Score = 91 (37.1 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA 314
D +F QI DE+D+ F GK+ ++ ++ DR + KG ++ + + S A
Sbjct: 52 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Query: 315 -IALSGQ---PLLGQPVMVKPSEAE 335
AL Q P + +P+ VKP+++E
Sbjct: 112 QSALHEQKTLPGMNRPIQVKPADSE 136
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 132 (51.5 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL-N 419
+LYVGNL++ + + L + F +GTV+ Q+ +D TG +GFGFV+ ++A+ A+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 420 LNGQLEIVGRAIKVS 434
LNG+ E+ GR + V+
Sbjct: 64 LNGK-EMDGRNLMVN 77
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 153 (58.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 19 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 77
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 78 RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 137
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 138 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 175
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 153 (58.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 42/159 (26%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 88
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+Q +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 89 G--MQPERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 146
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 147 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 184
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 153 (58.9 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 87
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 88 RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 148 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 185
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 153 (58.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 87
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 88 RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 148 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 185
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 153 (58.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 41/159 (25%), Positives = 77/159 (48%)
Query: 276 FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335
+FS+ G+V D ++ D+ + +S+G G+V+F D V +A L G+ + KP
Sbjct: 29 YFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC-TP 87
Query: 336 KNLVQXXXXXXXXXXXXXXXXXXXXRRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPL 394
+ + +++VG + N E +LR+ F+ FG V E+V +
Sbjct: 88 RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD 147
Query: 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
E +GFGF+ F + A+N++ +I+G+ ++V
Sbjct: 148 AEKQRPRGFGFITFEDEQSVDQAVNMHFH-DIMGKKVEV 185
WARNING: HSPs involving 777 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 647 452 0.00093 118 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1027
No. of states in DFA: 599 (64 KB)
Total size of DFA: 249 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.92u 0.15s 36.07t Elapsed: 00:00:01
Total cpu time: 35.98u 0.15s 36.13t Elapsed: 00:00:01
Start: Mon May 20 19:15:33 2013 End: Mon May 20 19:15:34 2013
WARNINGS ISSUED: 2