BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006398
(647 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 276 bits (705), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 240/412 (58%), Gaps = 35/412 (8%)
Query: 240 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 299
+E + + PE ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG
Sbjct: 139 REPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKG 195
Query: 300 VGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG 359
+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN A A S G
Sbjct: 196 IAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR-------AAAMANNLQKGSAG 248
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 419 -NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 477
LNG E+ GR +KV VT+++ A++ D D+ E G+ L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARLAE 365
Query: 478 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQV 537
G + PA AL + + GA + S ++ + + T L A V
Sbjct: 366 G------TGLQIPPAAQQ-ALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASV 418
Query: 538 -PTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 596
P A ++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K
Sbjct: 419 QPLA-----------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK 467
Query: 597 DSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+SA G VY++ + +A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 468 NSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 275 bits (704), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 240/412 (58%), Gaps = 35/412 (8%)
Query: 240 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 299
+E + + PE ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG
Sbjct: 139 REPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKG 195
Query: 300 VGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG 359
+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN A A S G
Sbjct: 196 IAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR-------AAAMANNLQKGSAG 248
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 419 -NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 477
LNG E+ GR +KV VT+++ A++ D D+ E G+ L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARLAE 365
Query: 478 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQV 537
G + PA AL + + GA + S ++ + + T L A V
Sbjct: 366 G------TGLQIPPAAQQ-ALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASV 418
Query: 538 -PTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 596
P A ++C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K
Sbjct: 419 QPLA-----------TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK 467
Query: 597 DSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
+SA G VY++ + +A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 468 NSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 519
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 237/411 (57%), Gaps = 39/411 (9%)
Query: 240 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 299
+E + + PE ERD RTVF Q+ + RD+ EFFS GKVRDVR+I DRNSRRSKG
Sbjct: 139 REPIDNLTPE---ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKG 195
Query: 300 VGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG 359
+ YVEF DV SVP+AI L+GQ +LG P++V+ S+AEKN A A S G
Sbjct: 196 IAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNR-------AAAMANNLQKGSAG 248
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
RLYVG+LHFN+TED LR +FEPFG +E +QL +D ETG KG+GF+ F+ E A+ AL
Sbjct: 249 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKAL 308
Query: 419 -NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDR 477
LNG E+ GR +KV VT+++ A++ D D+ E G+ L R LM +L
Sbjct: 309 EQLNG-FELAGRPMKVGHVTERTDASS--ASSFLDSDELERTGIDLGTTGRLQLMARLAE 365
Query: 478 SGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQV 537
G + PA AL + + GA + + T L Q T + + +
Sbjct: 366 G------TGLQIPPAAQQ-ALQMSGSLAFGAVADLQTR---LSQQTEASALAAAASVQPL 415
Query: 538 PTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 597
T +C L NMF+P+ E +D +IK+DV EC+K G + HI+V+K+
Sbjct: 416 AT-------------QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN 462
Query: 598 SA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDSI 647
SA G VY++ + +A AA ALHGRWFAGKMITA ++ TY FPDS+
Sbjct: 463 SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSM 513
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 204/397 (51%), Gaps = 35/397 (8%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ERD+RTVF Q+ + R++Y+FF +AG VRD +++ D+ S RSKGV YVEF SV
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295
Query: 313 MAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM 372
AIALSG+ LLG PV+V+ +EAEKN ++ + P+ RL V N+HFN+
Sbjct: 296 AAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF----HRLCVSNIHFNL 351
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
T++ ++ +FEPFG +E V L D+ KGFG++Q+ ARNAL ++ GR ++
Sbjct: 352 TDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411
Query: 433 VSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPA 492
V D+ TT L+ RS Q R+G ++T A
Sbjct: 412 VCLGNDK-----FTTETTSSMLKRFDETLARQERS-----QPSQRNGGSSTYESQDYREA 461
Query: 493 VNSTALPLPTAPLLGAASAVS--TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGV 550
P +P + ++ L+ L + + +L + + P +
Sbjct: 462 A-------PLSPTEEESRPITRDELMKKLARSEDISDNSKLVSEPEPP-----------I 503
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGEC-SKFGKLKHIFVEKDSAGFVYLRFENT 609
S C LL+NMF+P ET + ++++DV+ EC K+GK+ HI V + G ++++FEN
Sbjct: 504 RSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENA 563
Query: 610 QSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDS 646
A A LH RWF G+ I A+ + Y KFP++
Sbjct: 564 DFAEKAITGLHQRWFGGRTIKASILPETDYYFKFPNA 600
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 174/304 (57%), Gaps = 31/304 (10%)
Query: 177 REVIERERSRDREVIERERSRDREVIERERSRDRELKEREKERESRDNDKESRDNVMAIC 236
R+ R RS DR RSRD +R R L + S+ + V
Sbjct: 96 RQCRHRSRSWDRRHGSESRSRDHRREDRVHYRSPPLATGYRYGHSKSPHFREKSPV---- 151
Query: 237 RRPKEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRR 296
+E + + PE ERD RTVF Q+ + RD+ +FFS GKVRDVR+I DRNSRR
Sbjct: 152 ---REPVDNLSPE---ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR 205
Query: 297 SKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPY 356
SKG+ YVEF ++ SVP+AI L+GQ LLG P++V+ S+AEKN + +++A G
Sbjct: 206 SKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRL---AAMANNLQKG---- 258
Query: 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDAR 415
+GG RLYVG+LHFN+TED LR +FEPFG ++ + L D +TG KG+GF+ F+ E AR
Sbjct: 259 NGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 318
Query: 416 NAL-NLNGQLEIVGRAIKVSAVTDQSGLQDLGANTT---GDFDDDEGGGLSLNARSRALL 471
AL LNG E+ GR ++V VT++ D G + T GD + D G +A R L
Sbjct: 319 RALEQLNG-FELAGRPMRVGHVTER---LDGGTDITFPDGDQELDLG-----SAGGRFQL 369
Query: 472 MQKL 475
M KL
Sbjct: 370 MAKL 373
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 89/174 (51%), Gaps = 17/174 (9%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA- 316
T+F ++ D+ + + F G V R+I +R + RS+G GYV+F + AI
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 317 LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAG----ASGGGTGPYSGGARRLYVGNLHFNM 372
+ G+ + G+P+ N S S AG A G P S + L++GNL FN
Sbjct: 229 MQGKEIDGRPI---------NCDMSTSKPAGNNDRAKKFGDTP-SEPSDTLFLGNLSFNA 278
Query: 373 TEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALN-LNGQL 424
D + ++F G V V++P ET KGFG+VQF+ +EDA+ AL+ L G+
Sbjct: 279 DRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
++VG L +++ ++ L++ FE G V ++ + T +G+G+V F A A+
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 422 GQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEG-----GGLSLNARSRALL 471
EI GR I T + + A GD + G LS NA A+
Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIF 284
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ERD RT+ A + K + ++ E F A ++R V +SKG+ Y+EF
Sbjct: 391 ERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAE 445
Query: 313 MAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 371
G + G+ + + + EK Q GG +SG ++ L + NL ++
Sbjct: 446 KTFEEKQGTEIDGRSISLYYT-GEKGQNQDYR------GGKNSTWSGESKTLVLSNLSYS 498
Query: 372 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 431
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI
Sbjct: 499 ATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 555
Query: 432 KV 433
++
Sbjct: 556 RL 557
Score = 39.7 bits (91), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
++ L+V L + TE+ L++ F+ G+V + ETG KGFGFV F EDA+ A
Sbjct: 573 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 628
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ERD RT+ A + K + ++ E F A ++R V +SKG+ Y+EF
Sbjct: 389 ERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAE 443
Query: 313 MAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 371
G + G+ + + + EK Q GG +SG ++ L + NL ++
Sbjct: 444 KTFEEKQGTEIDGRSISLYYT-GEKGQNQDYR------GGKNSTWSGESKTLVLSNLSYS 496
Query: 372 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 431
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI
Sbjct: 497 ATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 553
Query: 432 KV 433
++
Sbjct: 554 RL 555
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 102/258 (39%), Gaps = 58/258 (22%)
Query: 239 PKEKKEQVEPEVDPERDQRTVFAYQIC----------LKADERDVYEFFSRAGKVRDVRL 288
P+ KK++VE + T F + LK DV+ A V DVR+
Sbjct: 291 PEAKKQKVE-----GTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLA--VVDVRI 343
Query: 289 IMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGA 348
M R GYV+F + A+ L+G + G + ++ + + + + +
Sbjct: 344 GMTRK------FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERD------ 391
Query: 349 SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 408
AR L NL + +T+D+L++VFE + LV + G KG +++F
Sbjct: 392 -----------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDGKSKGIAYIEF 436
Query: 409 ARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDL--GANTTGDFDDDEGGGLSLNAR 466
DA EI GR+I + ++ QD G N+T +
Sbjct: 437 KTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST------------WSGE 484
Query: 467 SRALLMQKLDRSGSATTI 484
S+ L++ L S + T+
Sbjct: 485 SKTLVLSNLSYSATEETL 502
Score = 39.7 bits (91), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
++ L+V L + TE+ L++ F+ G+V + ETG KGFGFV F EDA+ A
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ERD RT+ A + K + ++ E F A ++R V +SKG+ Y+EF
Sbjct: 390 ERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAE 444
Query: 313 MAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 371
G + G+ + + + EK Q GG +SG ++ L + NL ++
Sbjct: 445 KTFEEKQGTEIDGRSISLYYT-GEKGQNQDYR------GGKNSTWSGESKTLVLSNLSYS 497
Query: 372 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 431
TE+ L++VFE +++P ++ G KG+ F++FA EDA+ ALN + EI GRAI
Sbjct: 498 ATEETLQEVFE---KATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 554
Query: 432 KV 433
++
Sbjct: 555 RL 556
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 58/268 (21%)
Query: 234 AICRRPKE-KKEQVEPEVDPERDQRT--VFAYQIC------------LKADERDVYEFFS 278
A +R KE K++ PE ++ + T A+ + LK DV+
Sbjct: 277 APGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKND 336
Query: 279 RAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNL 338
A V DVR+ M R GYV+F + A+ L+G + G + ++ + + +
Sbjct: 337 LA--VVDVRIGMTRK------FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSK 388
Query: 339 VQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETG 398
+ + AR L NL + +T+D+L++VFE + LV + G
Sbjct: 389 KERD-----------------ARTLLAKNLPYKVTQDELKEVFEDAAEIRLV----SKDG 427
Query: 399 HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDL--GANTTGDFDDD 456
KG +++F DA EI GR+I + ++ QD G N+T
Sbjct: 428 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNST------ 481
Query: 457 EGGGLSLNARSRALLMQKLDRSGSATTI 484
+ S+ L++ L S + T+
Sbjct: 482 ------WSGESKTLVLSNLSYSATEETL 503
Score = 39.7 bits (91), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
++ L+V L + TE+ L++ F+ G+V + ETG KGFGFV F EDA+ A
Sbjct: 572 SKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 627
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ERD RT+F I ++ E F A +D+R+ ++ +KG+ YVEF +
Sbjct: 321 ERDSRTLFVKNIPYSTTVEELQEIFENA---KDIRIPTGKDGS-NKGIAYVEFSNEDEAN 376
Query: 313 MAIA-LSGQPLLGQPVMVK-PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHF 370
A+ G + G+ + V E +N SG GP G ++ L V NL +
Sbjct: 377 KALEEKQGAEIEGRSIFVDFTGEKSQN-----------SGNKKGP-EGDSKVLVVNNLSY 424
Query: 371 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 430
+ TED LR+VFE ++ + Q G KGF F++F+ EDA++A++ EI GR+
Sbjct: 425 SATEDSLREVFEKATSIRIPQ----NQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRS 480
Query: 431 IKV 433
I++
Sbjct: 481 IRL 483
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 23/168 (13%)
Query: 275 EFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333
EFFS+ ++D+R+ SK GYV+F V A+ L+G+ +LG V ++ +
Sbjct: 255 EFFSKKNLTIQDIRI------GNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKIEKAM 308
Query: 334 A-EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQL 392
A +KN N +R L+V N+ ++ T ++L+++FE + +++
Sbjct: 309 AFDKNKTAENKK------------ERDSRTLFVKNIPYSTTVEELQEIFE---NAKDIRI 353
Query: 393 PLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440
P + G KG +V+F+ ++A AL EI GR+I V ++S
Sbjct: 354 PTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKS 401
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSV 311
PE D + + + A E + E F +A +R + +N R+KG ++EF
Sbjct: 410 PEGDSKVLVVNNLSYSATEDSLREVFEKATSIR-----IPQNQGRAKGFAFIEFSSAEDA 464
Query: 312 PMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN 371
A+ +E E ++ S G GG S ++ L+V L +
Sbjct: 465 KDAMDSCNN-----------TEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSED 513
Query: 372 MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFA 409
TE+ L++ F+ G+V + +TG KGFGFV F+
Sbjct: 514 TTEETLKEAFD--GSVNARIVTDRDTGASKGFGFVDFS 549
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422
+++GNL+ D+L+ F + + + + G+ K FG+V F+ E+ AL L G
Sbjct: 235 IFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKALKLTG 294
Query: 423 QLEIVGRAIKV 433
+ +I+G +K+
Sbjct: 295 K-KILGTEVKI 304
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL 317
TVF ++ D++ + + F G + R+IMD S RSKG GYV+F + A+A
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 318 SG-QPLLGQPVMVKPSEAEKNLVQSNSSIAGA-------SGGGTGPYSGGARRLYVGNLH 369
+G + + G+ V NL SN A +G S + ++VGNL
Sbjct: 324 NGTKEIDGRMV---------NLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428
FN TED L F G ++ ++LP D ++G KGFG+V F+ ++ A+ + +NG I G
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHF-IAG 433
Query: 429 RAIKV 433
R ++
Sbjct: 434 RPCRL 438
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Query: 222 RDNDKESRDNVMAICRRPKEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAG 281
+ +D E D + ++PK P +T+FA + + DV FF AG
Sbjct: 268 KSSDVEMVDAEKSSAKQPKT------PSTPAAGGSKTLFAANLSFNIERADVENFFKEAG 321
Query: 282 KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQS 341
+V DVR +R+ +G G+VEF A+ G+PLLG+ + + ++ E+
Sbjct: 322 EVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQ-ERGERGE 380
Query: 342 NSSIAGASG----GGTGPYSGGARRLYVGNLHFNMTED----QLRQVFEPFGTVELVQLP 393
+ SG GG G G ++++V +++ED LR+ F G ++ V +P
Sbjct: 381 RPAFTPQSGNFRSGGDG---GDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVP 437
Query: 394 LD-ETGHCKGFGFVQFARLEDARNALNLNG 422
+D +TG+ KG +++F+ E AL LNG
Sbjct: 438 IDRDTGNSKGIAYLEFS--EGKEKALELNG 465
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 355 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413
P +GG++ L+ NL FN+ + F+ G V V+ + + G +GFG V+FA E+
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 414 ARNALNLNGQLEIVGRAIKV 433
A+ AL +G+ ++GR I++
Sbjct: 351 AQKALEFHGR-PLLGREIRL 369
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 47/196 (23%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++RL+ +SKG+ Y+EF
Sbjct: 391 RAARTLLAKNLSFNITEDELKEVFEDA---LEIRLVSQDG--KSKGIAYIEFKS------ 439
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSS----------IAGASG------GGTGPYS 357
++AEKNL + + G G G +S
Sbjct: 440 -----------------EADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWS 482
Query: 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
G ++ L + NL ++ TE+ L++VFE +++P ++ G KG+ F++FA EDA+ A
Sbjct: 483 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQGKSKGYAFIEFASFEDAKEA 539
Query: 418 LNLNGQLEIVGRAIKV 433
LN ++EI GR I++
Sbjct: 540 LNSCNKMEIEGRTIRL 555
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
++ L+V L + TE+ L++ FE G+V + ETG KGFGFV F EDA+ A
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 626
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 47/196 (23%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++RL+ RSKG+ Y+EF
Sbjct: 394 RAARTLLAKNLSFNITEDELKEVFEDA---VEIRLVSQDG--RSKGIAYIEFKS------ 442
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSS----------IAGASG------GGTGPYS 357
++AEKNL + + G G G +S
Sbjct: 443 -----------------EADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWS 485
Query: 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
G ++ L + NL ++ TE+ L++VFE +++P + G KG+ F++FA EDA+ A
Sbjct: 486 GESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNPHGKSKGYAFIEFASFEDAKEA 542
Query: 418 LNLNGQLEIVGRAIKV 433
LN ++EI GR I++
Sbjct: 543 LNSCNKMEIEGRTIRL 558
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 48/258 (18%)
Query: 240 KEKKEQVEPEVDPERDQR--------TVFAYQICLKADERDVYEF---FSRAGKVRDVRL 288
K KKE + + PE ++ T F I + V E S D+
Sbjct: 283 KRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAA 342
Query: 289 IMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQSNSSIAG 347
+ D + ++ GYV+F + A+ L+G + G + + KP + V++
Sbjct: 343 V-DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRA------ 395
Query: 348 ASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQ 407
AR L NL FN+TED+L++VFE + LV + G KG +++
Sbjct: 396 ------------ARTLLAKNLSFNITEDELKEVFEDAVEIRLV----SQDGRSKGIAYIE 439
Query: 408 FARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQD-LGANTTGDFDDDEGGGLSLNAR 466
F DA L EI GR++ + ++ Q+ G N+T +
Sbjct: 440 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNST------------WSGE 487
Query: 467 SRALLMQKLDRSGSATTI 484
S+ L++ L S + T+
Sbjct: 488 SKTLVLSNLSYSATEETL 505
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
++ L+V L + TE+ L++ FE G+V + ETG KGFGFV F EDA+ A
Sbjct: 574 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 629
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 47/196 (23%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPM 313
R RT+ A + E ++ E F A ++RL+ +SKG+ Y+EF
Sbjct: 392 RAARTLLAKNLSFNITEDELKEVFEDA---MEIRLVSQDG--KSKGIAYIEFKS------ 440
Query: 314 AIALSGQPLLGQPVMVKPSEAEKNLVQSNSS----------IAGASG------GGTGPYS 357
++AEKNL + + G G G T +S
Sbjct: 441 -----------------EADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWS 483
Query: 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
G ++ L + NL ++ T++ L +VFE +++P + G KG+ F++FA EDA+ A
Sbjct: 484 GESKTLVLSNLSYSATKETLEEVFE---KATFIKVPQNPHGKPKGYAFIEFASFEDAKEA 540
Query: 418 LNLNGQLEIVGRAIKV 433
LN ++EI GR I++
Sbjct: 541 LNSCNKMEIEGRTIRL 556
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 103/257 (40%), Gaps = 54/257 (21%)
Query: 241 EKKEQVEPEVDPER----DQRTVFAYQI-------CLKADERDVYEFFSRAG-KVRDVRL 288
++KE PE ++ + T F I + + + E F++ V DVR
Sbjct: 288 KQKEA--PEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRT 345
Query: 289 IMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV-KPSEAEKNLVQSNSSIAG 347
+R GYV+F + A+ L+G + G + + KP + V++
Sbjct: 346 GTNRK------FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRA------ 393
Query: 348 ASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQ 407
AR L NL FN+TED+L++VFE + LV + G KG +++
Sbjct: 394 ------------ARTLLAKNLSFNITEDELKEVFEDAMEIRLV----SQDGKSKGIAYIE 437
Query: 408 FARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARS 467
F DA L EI GR++ + ++ Q+ T+ + + S
Sbjct: 438 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTS-----------TWSGES 486
Query: 468 RALLMQKLDRSGSATTI 484
+ L++ L S + T+
Sbjct: 487 KTLVLSNLSYSATKETL 503
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
++ L+V L + TE+ L++ FE G+V + ETG KGFGFV F EDA+ A
Sbjct: 568 SKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAA 623
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 19/181 (10%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
+F + D + +Y+ FS G + ++ D N + SKG G+V F + + AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDAL 186
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQL 377
+G L GQ + V P + K + +S + T LYV N++ T++Q
Sbjct: 187 NGMLLNGQEIYVAPHLSRK---ERDSQLEETKAHYT--------NLYVKNINSETTDEQF 235
Query: 378 RQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL------NLNGQLEIVGRAI 431
+++F FG + L D G KGFGFV + + EDA A+ LNG+ VGRA
Sbjct: 236 QELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 432 K 432
K
Sbjct: 296 K 296
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 20/167 (11%)
Query: 270 ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVM 328
E +Y+ FS G V +R+ D ++ S G YV F D + AI L+ P+ G+
Sbjct: 51 EAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCR 110
Query: 329 VKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE 388
+ S+ + +L + G+ +++ NLH ++ L F FG +
Sbjct: 111 IMWSQRDPSLRKK-----------------GSGNIFIKNLHPDIDNKALYDTFSVFGDIL 153
Query: 389 LVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRAIKVS 434
++ DE G KGFGFV F A+ A++ LNG L + G+ I V+
Sbjct: 154 SSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGML-LNGQEIYVA 199
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422
L+V NL ++ +++L + F P+GT+ ++ E G KGFGFV F+ E+A A+
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 423 QLEIVGRAIKVS 434
Q + G+ + V+
Sbjct: 384 QQIVAGKPLYVA 395
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 330 KPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL 389
K +E +NL + A+G + + LYVG+L +++E L +F P G+V
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 66
Query: 390 VQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
+++ D T G+ +V F E R A+ I GR ++
Sbjct: 67 IRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRI 111
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 293 NSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGG 352
N+ ++KG Y+ F +V + + LS L G+ +++K SE + +A +
Sbjct: 178 NAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKN-- 235
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP-LDETGHCKGFGFVQFARL 411
P S R L+VGNL F++T+D LR+ F+ G + +++ +++G CKGF F+ F
Sbjct: 236 --PPS---RILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNE 290
Query: 412 EDARNALNLNGQLEIVGRAIKVSAVTDQS------GLQDLGANTTGDFD 454
E + NAL +I GR +++ D+S ++++ N + FD
Sbjct: 291 EGSTNALKDKSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSFD 339
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA-IAL 317
+F + D + F RAG V V +I D+ S RS+G G+V V A
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG------------------ 359
+G + G+ + V A + NSS G GG + Y GG
Sbjct: 150 NGYEIDGRAIRVNAGPAPAK--RENSSFGGGRGGNS-SYGGGRDGNSSFGGARGGRSVDS 206
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
+ R+YVGNL + + + L+++F G V ++ D ++G +GFGFV ++ ++ +A+
Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAI 266
Query: 419 -NLNGQLEIVGRAIKVSA 435
+LNG +++ GR+I+VSA
Sbjct: 267 DSLNG-IDLDGRSIRVSA 283
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
V+ + D+ + E FS G V D +++ DR+S RS+G G+V + V AI +L
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269
Query: 318 SGQPLLGQPVMVKPSE 333
+G L G+ + V +E
Sbjct: 270 NGIDLDGRSIRVSAAE 285
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 69.3 bits (168), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422
L++GNL FN+ +DQ+++ F+ G V V+L E G +GFG VQFA E+A+ AL L+G
Sbjct: 313 LFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHG 372
Query: 423 QLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRS 478
++ GR +++ ++ N TG F G S+++ ++ D S
Sbjct: 373 -CDLDGRPVRLDLAHERGAYTPHSRNDTGSFQKQNRG------SSQSIFVKGFDSS 421
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL 317
T+F + ++ V EFF G+V VRL + S+G G+V+F A+ L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDG-SSRGFGHVQFASSEEAKKALEL 370
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYS----GGARRLYVGNLHFNMT 373
G L G+PV + +L + S TG + G ++ ++V ++
Sbjct: 371 HGCDLDGRPVRL-------DLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLE 423
Query: 374 EDQLRQVFEPF----GTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG 422
E ++R+ E G + V +P+D ETG KG ++ F AL L+G
Sbjct: 424 ESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSG 477
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 277 FSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329
F+ G++ V + MDR + SKG+ Y++F D S A+ LSG L G + V
Sbjct: 435 FADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYV 487
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMA-IAL 317
+F + D + F RAG V V +I D+ + RS+G G+V V A
Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGG------------------ 359
+G + G+ + V A + NSS G GG + Y GG
Sbjct: 149 NGYEIDGRAIRVNAGPAPAK--RENSSFGGGRGGNS-SYGGGRDGNSSFGGARGGRSVDS 205
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNAL 418
+ R+YVGNL + + + L+++F G V ++ D ++G +GFGFV ++ ++ +A+
Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAI 265
Query: 419 -NLNGQLEIVGRAIKVSA 435
+LNG +++ GR+I+VSA
Sbjct: 266 DSLNG-VDLDGRSIRVSA 282
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
V+ + D+ + E FS G V D +++ DR+S RS+G G+V + V AI +L
Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268
Query: 318 SGQPLLGQPVMVKPSE 333
+G L G+ + V +E
Sbjct: 269 NGVDLDGRSIRVSAAE 284
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 67.0 bits (162), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 12/181 (6%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + AD + E F RAG V V +I D+ + RS+G G+V V A
Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 318 SGQPLLGQPVMVK---PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTE 374
+G L G+ + V P E +N S G S + R+YVGNL + + +
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS-------FDSSNRVYVGNLAWGVDQ 201
Query: 375 DQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433
D L +F G V ++ D ++G +GFGFV ++ E+ NA+ +++ GRAI+V
Sbjct: 202 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 261
Query: 434 S 434
S
Sbjct: 262 S 262
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
+++VGNL F+ L ++FE G VE+V++ D+ TG +GFGFV + E+ A
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 421 NGQLEIVGRAIKVSA 435
E+ GRA++V++
Sbjct: 148 FNGYELDGRALRVNS 162
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
V+ + D+ + FS GKV D +++ DR+S RS+G G+V + V AI +L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 318 SGQPLLGQPVMVKPSEA 334
G L G+ + V P+EA
Sbjct: 250 DGVDLNGRAIRVSPAEA 266
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ERD RT+F + + E ++ F A +VRL++++ SKG+ Y+EF
Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKEGS-SKGMAYIEFKTEAEAE 422
Query: 313 MAIALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM 372
A+ + MV EK+ +S GGG ++ L V NL +
Sbjct: 423 KALEEKQGTEVDGRAMVIDYTGEKSQQESQK------GGG----ERESKTLIVNNLSYAA 472
Query: 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
+E+ L+++F+ +++P + G KG+ FV+F EDA+ ALN EI GRAI+
Sbjct: 473 SEETLQELFK---KATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIR 529
Query: 433 V 433
+
Sbjct: 530 L 530
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVP 312
ER+ +T+ + A E + E F +A ++ + N R KG +VEF
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAK 512
Query: 313 MAI-ALSGQPLLGQPVMVK---PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNL 368
A+ + + + G+ + ++ PS + N+ A GG ++ ++ L+V L
Sbjct: 513 EALNSCNNTEIEGRAIRLEFSSPSWQKGNM--------NARGG----FNQQSKTLFVRGL 560
Query: 369 HFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
+ TE+ LR+ FE G++ + +TG KGFGFV F+ EDA+ A
Sbjct: 561 SEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 88/159 (55%), Gaps = 14/159 (8%)
Query: 281 GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLV 339
G V+ ++++DR + RSKG G+V F D A+ ++GQ +P+ + P+ A KN +
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA-ANKNAL 237
Query: 340 QSNSSIA----GASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 395
++ GA+ G P + ++VG L N+T+D+L+ +F FG + V++P
Sbjct: 238 PMQPAMYQNTQGANAGDNDPNN---TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPG 294
Query: 396 ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434
+ C GFVQ+A A +AL++ ++ G++I++S
Sbjct: 295 K--RC---GFVQYANKASAEHALSVLNGTQLGGQSIRLS 328
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 269 DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVM 328
DE + F+++G+ ++I ++ + +S+G G++EF V ++A + +L Q
Sbjct: 72 DENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF-----VSHSVA---ERVL-QTYN 122
Query: 329 VKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFE-PFGTV 387
P + + + N + AGA G G ++VG+L +T+ L F+ +G+V
Sbjct: 123 GAPMPSTEQTFRLNWAQAGA-GEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSV 181
Query: 388 ELVQLPLD-ETGHCKGFGFVQFA-RLEDARNALNLNGQ 423
+ ++ LD TG KG+GFV+FA E R +NGQ
Sbjct: 182 KGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQ 219
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
+F + AD + E F RAG V V +I D+ + RS+G G+V V A
Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 318 SGQPLLGQPVMVK----PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMT 373
+G L G+ + V P + E + + NSS G S GG + R+YVGNL + +
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGS--FDSSNRVYVGNLAWGVD 206
Query: 374 EDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432
+D L +F G V ++ D ++G +GFGFV ++ E+ NA+ +++ GRAI+
Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266
Query: 433 VS 434
VS
Sbjct: 267 VS 268
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
+++VGNL F+ L ++FE G VE+V++ D+ TG +GFGFV + E+ A
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 421 NGQLEIVGRAIKVSA 435
E+ GRA++V++
Sbjct: 148 FNGYELDGRALRVNS 162
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
V+ + D+ + FS GKV D +++ DR+S RS+G G+V + V AI +L
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255
Query: 318 SGQPLLGQPVMVKPSEA 334
G L G+ + V P+EA
Sbjct: 256 DGVDLNGRAIRVSPAEA 272
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 18/197 (9%)
Query: 38 RSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSSC--HRSWSRDGGRDRP 95
RS SK + D K E +G K + SR H+ R E C R +D +
Sbjct: 612 RSDLSKHRHDGKAEKIRAEG------KGHETSRKHEGRSELSRDCKEERHREKDSDSSKG 665
Query: 96 RSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRD-RRERDHDTDRDREKDKEKEREKS 154
R S + E +RD+++E+ D+ ++GR+++ + RD + +D+EKD+EK R+K
Sbjct: 666 RRSDTSKSSRVEHNRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKE 725
Query: 155 HRSGSQSERYRSDRDERERSRDREVI---ERERSRDREVIERERSRDREV-IERERSRDR 210
G ER + E+E+ RD+E + +++RS+D E RE+ +D+E+ +RE+++D+
Sbjct: 726 VEKGRYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKC-REKDQDKELEKDREKNQDK 784
Query: 211 ELKEREKERESRDNDKE 227
EL EK RE +D DKE
Sbjct: 785 EL---EKGRE-KDQDKE 797
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 120/211 (56%), Gaps = 18/211 (8%)
Query: 21 EKETANGDGNVKS-EDRVRSRSSKCKSDEKVEDYDDDGHRSRGSKSRDESR-NHDRRKER 78
EK A G G+ S + RS S+ +E+ + D D + R S + SR H+R KE+
Sbjct: 625 EKIRAEGKGHETSRKHEGRSELSRDCKEERHREKDSDSSKGRRSDTSKSSRVEHNRDKEQ 684
Query: 79 DSSCHRSWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRDRRERDHD 138
+ + D G ++ R + RD ER +D+++++ GRD+ ++GR ++R
Sbjct: 685 E----QEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKGRYKERV----- 735
Query: 139 TDRDREKDKEKEREKSHRSGSQSERYRSDRDERERSRDREV-IERERSRDREVIE-RERS 196
+DR K++EK R+K G +R + RE+ +D+E+ +RE+++D+E+ + RE+
Sbjct: 736 --KDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKD 793
Query: 197 RDREVIERERSRDRELKEREKERESRDNDKE 227
+D+E +E+ R +DR+ KE EK RE +D DKE
Sbjct: 794 QDKE-LEKGREKDRD-KEMEKARE-KDQDKE 821
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 37/212 (17%)
Query: 19 AKEKETANGDGNVKSEDRVRSRS-SKC------KSDEKVEDYDDDGHRSRG-SKSRDESR 70
KE+E VK D+ RS+ KC K EK + + D +G K +D+
Sbjct: 739 VKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKEL 798
Query: 71 NHDRRKERDSSCHRSWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDR 130
R K+RD ++ +D ++ + + +D++ E+ +++DR++ R+++RD+ RD+
Sbjct: 799 EKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDK--VREKDRDKVRDK 856
Query: 131 DRRERDHDTDRDREKDKEKEREKSHRSGSQSERYRSDRDERERSRDREVIERERSRDREV 190
DR D+ REKD++K REK DRD + R +DRE I RER RD+
Sbjct: 857 DR-------DKVREKDRDKVREK-------------DRD-KLREKDREKI-RERDRDK-- 892
Query: 191 IERERSRDREVIE-RERSRDRE-LKEREKERE 220
RE+ RD+E ++ RE+ +++E LK+R+KERE
Sbjct: 893 -GREKDRDKEQVKTREKDQEKERLKDRDKERE 923
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 11/185 (5%)
Query: 45 KSDEKVEDYDDDGHRSRGSKSRDESRNHDRRKERDSSCHRSWSRDGGRDRPRSSWEHRDR 104
K EK + D D +G + +D+ + ++ +E+D R RD RD+ R +DR
Sbjct: 808 KEMEKAREKDQDKELEKG-REKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDR 866
Query: 105 DTERDRDRD----REERNGRDRNRDRGRDRDR-----RERDHDTDRDREKDKEKEREKSH 155
D R++DRD ++ R+R+RD+GR++DR + R+ D +++R KD++KEREK
Sbjct: 867 DKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKEREKVR 926
Query: 156 RSGSQSERYRSDRDERERSRDREVIE-RERSRDREVIERERSRDREVIERERSRDRELKE 214
G +R + + +E + D++ E R R V + R+ + I+ ERS +
Sbjct: 927 DKGRDRDRDQEKKRNKELTEDKQAPEQRSRPNSPRVKQEPRNGEESKIKPERSVHKNSNN 986
Query: 215 REKER 219
++++R
Sbjct: 987 KDEKR 991
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 110/191 (57%), Gaps = 19/191 (9%)
Query: 48 EKVEDYDDDGHRSRGS---KSRDESRNHDRRKERDSSCHRSWSRDGGRDRPRSS--WEHR 102
E+V+D + D + R K R + R DR KE++ R + GRD+ RS + R
Sbjct: 709 ERVKDQEKDQEKGRDKEVEKGRYKERVKDRVKEQEKV--RDKEQVKGRDKKRSKDLEKCR 766
Query: 103 DRDTERDRDRDREERNGRDRNRDRGRDRDR-------RERDHDTDRDREKDKEKEREKSH 155
++D +++ ++DRE+ ++ + R +D+D+ ++RD + ++ REKD++KE EK
Sbjct: 767 EKDQDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGR 826
Query: 156 RSGSQSERYRSDRDERERSRDREVIERERSRDREVIERERSRDREVIERERSRDRELKER 215
E + +R++ R+++ ++ R +DR+ + RE+ RD+ V E++R + RE K+R
Sbjct: 827 EKDQDKELEKGQEKDRDKVREKDR-DKVRDKDRDKV-REKDRDK-VREKDRDKLRE-KDR 882
Query: 216 EKERESRDNDK 226
EK RE RD DK
Sbjct: 883 EKIRE-RDRDK 892
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL 418
G++ L+VGNL +N+ ++Q++Q F+ G V ++ E G+ +GFG V+FA E A+ AL
Sbjct: 447 GSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKAL 506
Query: 419 NLNGQLEIVGRAIKV 433
L G +++GR +++
Sbjct: 507 ELAGH-DLMGRPVRL 520
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRL--IMDRNSRRSKGVGYVEFYDVMSVPMA 314
+T+F + ++ V +FF AG+V D+R D N R G G+VEF + A
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFR---GFGHVEFATAEAAKKA 505
Query: 315 IALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTG--------PYSGGARRLYVG 366
+ L+G L+G+PV + +L + GA G+G P +++
Sbjct: 506 LELAGHDLMGRPVRL-------DLARER----GAYTPGSGRDNSSFKKPAQSSGNTIFIK 554
Query: 367 NLHFNMTEDQLRQVFEP-FGT---VELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN 421
++ Q+R E FG+ + V +P D ETG KG ++ FA A LN
Sbjct: 555 GFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELN 614
Query: 422 G 422
G
Sbjct: 615 G 615
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRL-IMDRNSRRSKGVGYVEFYDVMSVPMAI 315
+T+FA + + D+ FF AG+V DVRL D S KG G++EF A+
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGS--FKGYGHIEFASPEEAQKAL 441
Query: 316 ALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTED 375
++G+ LLG+ V + + SN G G G+ +R +YV ++ ED
Sbjct: 442 EMNGKLLLGRDVRLDLANERGTPRNSN---PGRKGEGS-----QSRTIYVRGFSSSLGED 493
Query: 376 ----QLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 430
+LR F G V V +P D ETG +GF ++ D AL L+G EI G
Sbjct: 494 EIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD--EALQLSGS-EIGGGN 550
Query: 431 IKV 433
I V
Sbjct: 551 IHV 553
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNA 417
GG++ L+ GNL + + + F+ G V V+L + G KG+G ++FA E+A+ A
Sbjct: 381 GGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKA 440
Query: 418 LNLNGQLEIVGRAIKV 433
L +NG+L ++GR +++
Sbjct: 441 LEMNGKL-LLGRDVRL 455
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 299 GVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQ-----------SNSSIA 346
G G++EF I L+G + G + +K S+ + VQ S SI
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIK 784
Query: 347 GASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFV 406
G P S ++ + NL F T ++R++F +G ++ V++P G +GFGFV
Sbjct: 785 SNGGQPNKPSS----KIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFV 840
Query: 407 QFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFD 454
+F E+A+NA+ G GR + + + +L D++
Sbjct: 841 EFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDKNIDELREKANLDYE 888
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARN 416
G + R++V NL ++ E+ L +VF FG + + +P+D ++ KG F+ + E+A
Sbjct: 358 GESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQ 417
Query: 417 ALN-LNGQLEIVGRAIKV 433
ALN ++G++ GR I V
Sbjct: 418 ALNDMDGKV-FQGRLIHV 434
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421
R+ V L ++T+ + ++ FE FGTV ++ + + G + FGF+ F+ + A+NAL+LN
Sbjct: 5 RICVKQLPKHLTDKRFKEHFEKFGTVTDAKI-IKKDGKSRLFGFIGFSTEQSAKNALSLN 63
Query: 422 GQL 424
G
Sbjct: 64 GTF 66
Score = 40.8 bits (94), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
+F + E D+ + FS+ GK+ ++ + +D +S++SKG+ ++ + + A+ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 318 SGQPLLGQPVMVKPSEA 334
G+ G+ + V P +A
Sbjct: 423 DGKVFQGRLIHVLPGKA 439
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNL 420
+L+VGNL FN+ QL Q+FE G VE+V++ D+ TG +GFGFV + + + A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 421 NGQLEIVGRAIKVSA 435
E+ GR ++V+A
Sbjct: 152 FNGYELDGRPLRVNA 166
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 15/201 (7%)
Query: 249 EVDPERDQR-----TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYV 303
+V P ++Q +F + D + + F AG V V +I D+ + RS+G G+V
Sbjct: 78 DVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Query: 304 EFYDVMSVPMAIA-LSGQPLLGQPVMVK----PSEAEKNLVQS----NSSIAGASGGGTG 354
V V A +G L G+P+ V P + E + S GGG G
Sbjct: 138 TMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGG 197
Query: 355 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413
+G R+YVGNL + + + L +F G V ++ D ++G KGFGFV + ++
Sbjct: 198 SGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQE 257
Query: 414 ARNALNLNGQLEIVGRAIKVS 434
+NA+ ++ GR I+VS
Sbjct: 258 VQNAIKSLDGADLDGRQIRVS 278
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-AL 317
V+ + D+ + FS GKV + R+I DR+S RSKG G+V + V AI +L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 318 SGQPLLGQPVMVKPSEA 334
G L G+ + V +EA
Sbjct: 266 DGADLDGRQIRVSEAEA 282
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 124/334 (37%), Gaps = 55/334 (16%)
Query: 339 VQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVF-EPFGTVELVQLPLDET 397
VQS + G S + +RRLYVGN+ F E+ + F + L Q P +
Sbjct: 159 VQSAVPVVGPS------VTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPI 212
Query: 398 GHC-----KGFGFVQFARLEDARNALNLNGQLEIVGRAIKV------------------- 433
C K F F++F +++ + +G + +G+ +KV
Sbjct: 213 LLCQINLDKNFAFIEFRSIDETTAGMAFDG-INFMGQQLKVRRPRDYQPSQNTFDMNARM 271
Query: 434 ---SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 490
S V D + +G +D+ L + +D G++ G A
Sbjct: 272 PVSSIVVDSANKIFIGG-LPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSK---GYAFA 327
Query: 491 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGV 550
++ T A L G LV L H L + A + + G
Sbjct: 328 EYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHLPNSASA-IAGIDLSQGAGR 386
Query: 551 PSECLLLKNMFDP----KNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-------DSA 599
+E L L NM +E YEE I EDV ECSK+G ++ + + +
Sbjct: 387 ATEILCLMNMVTEDELRSDEDYEE----ILEDVREECSKYGIVRSLEIPRPYDDHPVPGV 442
Query: 600 GFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 633
G V++ F T AQ AL GR FA + + ++
Sbjct: 443 GKVFVEFATTSDCQRAQAALTGRKFANRTVVTSY 476
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 15/188 (7%)
Query: 231 NVMAICRRPKEKKEQVEPEVDPER--DQRTVFAYQICLKADERDVYEFFSRAGKVRDV-- 286
N+ A P+ + P V P R ++ I +E + +FF++ + ++
Sbjct: 147 NMQASGAVPRGSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQ 206
Query: 287 ---RLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK---PSEAEKNLVQ 340
I+ K ++EF + +A G +GQ + V+ + +N
Sbjct: 207 APGNPILLCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFD 266
Query: 341 SNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHC 400
N+ + +S A ++++G L +TEDQ++++ FG ++ L +D G+
Sbjct: 267 MNARMPVSS-----IVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNS 321
Query: 401 KGFGFVQF 408
KG+ F ++
Sbjct: 322 KGYAFAEY 329
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 56.2 bits (134), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 77/180 (42%), Gaps = 27/180 (15%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FFS+ +++ K +VE
Sbjct: 236 RHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRS 295
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 352
V A++L G G PV V+ PS+ +L + + GASGG
Sbjct: 296 VEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPSPHLNLAAVGLTPGASGGL 355
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 411
GP R++VG L + TE Q+R++ E FG ++ L D ETG+ KG+ F + L
Sbjct: 356 EGP-----DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 100 EHRDRDTERDRDRDREERNGRDRNRDRGRDRDRRERDHDTDRDREKDKEKE---REKSHR 156
E RD + E R +DRE GRD++R+R + RR RD D ++ +E+ ++K+ RE+ HR
Sbjct: 40 ESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHR 99
Query: 157 S 157
S
Sbjct: 100 S 100
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 574 DIKEDVEGECSKFGKLKHIFVEKDSA--------GFVYLRFENTQSAFAAQRALHGRWFA 625
DI ED+ E KFG L ++ + + S G V+L++ +T + A+ ++GR F
Sbjct: 493 DIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFG 552
Query: 626 GKMITATFMVPQTYE 640
G + A + +E
Sbjct: 553 GNEVVAVYYPEDKFE 567
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 12/61 (19%)
Query: 170 ERERSRDREVIERERSRDREVIERERSRDREVIERERSRDRELKEREKERESRDNDKESR 229
E RS+DRE RE+ RD++ R RD EV R R RD E+ KER SRD D++ R
Sbjct: 47 ETSRSKDRE---REKGRDKD-----RERDSEVSRRSRDRD---GEKSKER-SRDKDRDHR 94
Query: 230 D 230
+
Sbjct: 95 E 95
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 74/176 (42%), Gaps = 25/176 (14%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FFS+ +++ K +VE
Sbjct: 252 RHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 311
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSNSSIAGASGGGT 353
V A+AL G L G PV V+ PS+ NL N G S G T
Sbjct: 312 VEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNL---NLGAVGLSSGST 368
Query: 354 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 408
G G R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F +
Sbjct: 369 GGLEG-PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 128/331 (38%), Gaps = 65/331 (19%)
Query: 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTV----------ELVQLPLDETGHCKGFGFVQFA 409
ARR+YVG L E + F + +V + ++ H K F FV+
Sbjct: 254 ARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYIN---HEKKFAFVEMR 310
Query: 410 RLEDARNALNLNGQLEIVGRAIKVSAVTDQS------------------GLQDLGANTTG 451
+E+A NA+ L+G + + G +KV TD + G L + +TG
Sbjct: 311 SVEEASNAMALDGII-LEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTG 369
Query: 452 DFDDDE---GGGLSL---NARSRALL----------MQKLDRSGSATTIAGSAVT-PAVN 494
+ + GGL + R LL + K +G++ A P+V
Sbjct: 370 GLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 495 STALPLPTAPLLGAASAVSTL-VPPLVQGTVPTHPGQ---LGTALQVPTASVPIFDTIGV 550
A A L G TL V +QG + P Q L A Q +F G
Sbjct: 430 DIA----CAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGT 485
Query: 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDS--------AGFV 602
P++ + L + + +E +I ED+ E KFG L ++ + + + G V
Sbjct: 486 PTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKV 545
Query: 603 YLRFENTQSAFAAQRALHGRWFAGKMITATF 633
+L + + + A+ ++GR F G + A +
Sbjct: 546 FLEYADVDGSSKARSGMNGRKFGGNQVVAVY 576
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSR------AGKVRDVRLIMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FFS +++ K +VE
Sbjct: 218 RHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRS 277
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 352
V A+AL G G PV V+ PS+ NL + + S G+SGG
Sbjct: 278 VEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGSTPGSSGGL 337
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 408
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F +
Sbjct: 338 EGP-----DRIFVGGLPYYFTESQIRELLESFGQLRGFDLVKDRETGNSKGYAFCVY 389
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 574 DIKEDVEGECSKFGKLKHIFVEKDSA--------GFVYLRFENTQSAFAAQRALHGRWFA 625
DI ED+ EC KFG L ++ + + + G V+L + + + A++ L+GR F
Sbjct: 475 DILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFG 534
Query: 626 GKMITATF 633
G + A F
Sbjct: 535 GNQVVAVF 542
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 25/176 (14%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRA-----GKVRDV-RLIMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FF++ G + +++ K +VE
Sbjct: 269 RHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRS 328
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSNSSIAGASGGGT 353
V A+AL G G PV V+ PS+ NL + + +GGG
Sbjct: 329 VEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAGGGL 388
Query: 354 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 408
G R++VG L + TE Q+R++ E FG + + D ETG+ KG+ F +
Sbjct: 389 E----GPDRIFVGGLPYYFTEAQVRELLETFGPLRGFDIVKDKETGNSKGYAFCLY 440
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 26/192 (13%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
V+ ++ +A ERDV FF GK+ +V L G G+VEF D+ A+ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGG--------TGPYSGGARRLYVGNLH 369
+G+ L G+ V+V E + + S +G SG G GP + RL V NL
Sbjct: 56 NGKDLCGERVIV---EHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429
+ L+ G V D K G ++F D + AL E+ GR
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYA----DAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGR 168
Query: 430 AIKVSAVTDQSG 441
I++ V D+ G
Sbjct: 169 KIRL--VEDKPG 178
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 33/210 (15%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V +F++ +++ K +VE
Sbjct: 204 RHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRS 263
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 352
V A+AL G G PV V+ PS+ NL + + G++GG
Sbjct: 264 VEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSAGGL 323
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 411
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F + L
Sbjct: 324 EGP-----DRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 378
Query: 412 E------DARNALNLNGQLEIVGRAIKVSA 435
A N + + + V RA + SA
Sbjct: 379 NVTDIACAALNGIKMGDKTLTVRRANQGSA 408
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 544 IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK------- 596
++ +P++ + L + +E DI ED+ E K+G L + + +
Sbjct: 431 VYQVGALPTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEP 490
Query: 597 -DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 633
G V+L + + + A+ A+HGR F G + A F
Sbjct: 491 VSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 528
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 27/177 (15%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V FFS +++ K +VE
Sbjct: 236 RHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRS 295
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNLVQSNSSIA-GASGGG 352
V A+AL G G P V+ PS+ NL + ++ G++GG
Sbjct: 296 VEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLSPGSAGGL 355
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQF 408
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F +
Sbjct: 356 EGP-----DRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVY 407
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 574 DIKEDVEGECSKFGKLKHIFVEKDS--------AGFVYLRFENTQSAFAAQRALHGRWFA 625
DI ED+ EC KFG L ++ + + S G V+L + + S+ A+++L+GR F
Sbjct: 493 DILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFG 552
Query: 626 GKMITATF 633
G + A F
Sbjct: 553 GNQVVAVF 560
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 24/184 (13%)
Query: 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L 317
V+ ++ +A ERDV FF GK+ +V L G G+VEF D+ A+ L
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55
Query: 318 SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGG--------TGPYSGGARRLYVGNLH 369
+G+ L G+ V+V+ + + + S +G SG G GP + RL V NL
Sbjct: 56 NGKDLCGERVIVEHARGPR---RDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429
+ L+ G V D K G ++F D + AL E+ GR
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYA----DAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGR 168
Query: 430 AIKV 433
I++
Sbjct: 169 KIRL 172
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 27/180 (15%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E V +F++ +++ K +VE
Sbjct: 235 RHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRS 294
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 352
V A+AL G G PV V+ PS+ NL + + G++GG
Sbjct: 295 VEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGL 354
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 411
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F + L
Sbjct: 355 EGP-----DRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 409
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 550 VPSECLLLKNMFDPK----NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-------- 597
+P++ + L + P +E YE DI +D+ E ++G L + + +
Sbjct: 470 LPTKVVCLTQVVSPDELRDDEEYE----DIVQDMREEGCRYGNLVKVVIPRPDPSGAPVA 525
Query: 598 SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 633
G V+L F + +S+ A+ +HGR FA + A F
Sbjct: 526 GVGRVFLEFADVESSTKAKNGMHGRKFANNQVVAVF 561
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 30/191 (15%)
Query: 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRL------IMDRNSRRSKGVGYVEFYD 307
R R V+ + A+E+ V +F++ +++ K +VE
Sbjct: 211 RHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRS 270
Query: 308 VMSVPMAIALSGQPLLGQPVMVK--------------PSEAEKNL-VQSNSSIAGASGGG 352
V A+AL G G PV V+ PS+ NL + + G++GG
Sbjct: 271 VEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSAGGL 330
Query: 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 411
GP R++VG L + TE Q+R++ E FG + L D ETG+ KG+ F + L
Sbjct: 331 EGP-----DRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDL 385
Query: 412 ---EDARNALN 419
+ A ALN
Sbjct: 386 NVTDIACAALN 396
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 569 EEFDMDIKEDVEGECSKFGKLKHIFVEK-DSAGF-------VYLRFENTQSAFAAQRALH 620
EE++ DI ED+ E K+G L + + + D +G V+L + + A A+ A+H
Sbjct: 464 EEYE-DIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMH 522
Query: 621 GRWFAGKMITATF 633
GR F G + A F
Sbjct: 523 GRKFGGNPVVAVF 535
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 13/187 (6%)
Query: 240 KEKKEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKG 299
KE+K E+ R V + + + + + F G V + +D + S G
Sbjct: 244 KERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGV-STG 302
Query: 300 VGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKN--------LVQSNSSIAGASG 350
G V FYD+ + AI +G + G + VK E+ N + +S + +
Sbjct: 303 SGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSPVNEEAR 362
Query: 351 GGTGPYSGGARR---LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQ 407
T GG R +Y NL F+ + L +FE G V +L D G G V+
Sbjct: 363 KFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVE 422
Query: 408 FARLEDA 414
+ ++DA
Sbjct: 423 YDNVDDA 429
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 117/314 (37%), Gaps = 37/314 (11%)
Query: 148 EKEREKSHRSGSQSER------YRSDRDERERSRDREVIE-RERSR-------------- 186
E++ S RSG+ + R YR RD E RE + RER R
Sbjct: 33 ERDNHLSRRSGNYNGRRKFADTYRGSRDRGEYRGGRERSDYRERERFNNRDNPRSRDRYD 92
Query: 187 ----DREVIERERSRDREVIERERSRDRELKEREKERESRDNDKESRDNVMAICRRPKEK 242
R+V R +R + RSR R+ R +R + + R E
Sbjct: 93 DRRRGRDVTGRYGNRRDDYPRSFRSRH---NTRDDSRRGGFGSSGARGDYGPLLAR--EL 147
Query: 243 KEQVEPEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGY 302
E +V+ ++F + + D+ EFFS+ GKV +I R R G+G
Sbjct: 148 DSTYEEKVNRNY-SNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHR--GMGT 204
Query: 303 VEFYDVMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGAR 361
VEF + V AI G + + + V+ +N A G ++
Sbjct: 205 VEFTNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPP---SNNIKERKALDRGELRHNRKTH 261
Query: 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421
+ V NL ++ L+ +F+ G V + LD G G G V F ++D A+
Sbjct: 262 EVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKY 321
Query: 422 GQLEIVGRAIKVSA 435
I G + V +
Sbjct: 322 NGYSIEGNVLDVKS 335
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 361 RRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 419
R +YVGNL+ T DQL + F+ G V+ V++ DET + F FV+FA AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTR-FAFVEFADQNSVPRALA 127
Query: 420 LNGQL 424
NG +
Sbjct: 128 FNGVM 132
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 250 VDPERD---QRTVFAYQICLKADERD-VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
VDP + +RTV+ + + D + EFF + G+V+ VR+ D + +VEF
Sbjct: 59 VDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEF 116
Query: 306 YDVMSVPMAIALSGQPLLGQPV--------MVKPSE 333
D SVP A+A +G +P+ +VKP E
Sbjct: 117 ADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPE 152
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 361 RRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 419
R +YVGNL+ T DQL + F+ G V+ V++ DET + F FV+FA AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTR-FAFVEFADQNSVPRALA 127
Query: 420 LNGQL 424
NG +
Sbjct: 128 FNGVM 132
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 250 VDPERD---QRTVFAYQICLKADERD-VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
VDP + +RTV+ + + D + EFF + G+V+ VR+ D + +VEF
Sbjct: 59 VDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEF 116
Query: 306 YDVMSVPMAIALSGQPLLGQPV--------MVKPSE 333
D SVP A+A +G +P+ +VKP E
Sbjct: 117 ADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPE 152
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 361 RRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN 419
R +YVGNL+ T DQL + F+ G V+ V++ DET + F FV+FA AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTR-FAFVEFADQNSVPRALA 124
Query: 420 LNGQL 424
NG +
Sbjct: 125 FNGVM 129
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Query: 250 VDPERD---QRTVFAYQICLKADERD-VYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEF 305
VDP + +RTV+ + + D + EFF + G+V+ VR+ D + +VEF
Sbjct: 56 VDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET--QPTRFAFVEF 113
Query: 306 YDVMSVPMAIALSGQPLLGQPV--------MVKPSE 333
D SVP A+A +G +P+ +VKP E
Sbjct: 114 ADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPE 149
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 85 SWSRDGGRDRPRSSWEHRDRDTERDRDRDREERNGRDRNRDRGRDRDR 132
+WSR+ DRPR HRD+D+ RD DR+RE R NRDR R+ DR
Sbjct: 2122 NWSRERDWDRPREWDRHRDKDSSRDWDRNRE----RSANRDREREADR 2165
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLN 421
L+V L++ +E ++++ FE +G ++ V L D+ T KG+ F+++ D + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 422 GQLEIVGRAIKV 433
+I GR + V
Sbjct: 200 DGQKIDGRRVLV 211
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster
GN=ncm PE=1 SV=3
Length = 1330
Score = 40.4 bits (93), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 87/165 (52%), Gaps = 36/165 (21%)
Query: 56 DGHRSRGSKSRDESRN----------------HDRRKERDSSCHRSWSRDGGRDR--PRS 97
D R RG+ S D RN HDR+++RD S RS+ R R+ PR
Sbjct: 1162 DRERKRGNSSYDRERNRESSYDKERKNRNAVAHDRQRKRDRS--RSYERPTIRENSAPR- 1218
Query: 98 SWEHRDRDTERDRDRDREERNGRDRNRDRGRDRDRRERDHDTDRDREKDKEKEREKSHRS 157
E R + ++D R +R+ R+ DRG DR ER +DR D+ E+S R
Sbjct: 1219 --EKRMESSRSEKDSRRGDRSSRNERSDRGERSDRGER---SDRGERSDRG---ERSDR- 1269
Query: 158 GSQSER-YRSDRDERERSRDREVIERERSRDREVI-ERERSRDRE 200
G +S+R RSDR E+ERSR + ERER RDR++ +RER R+R+
Sbjct: 1270 GERSDRGERSDR-EKERSRAK---ERERDRDRDLKGQRERKRERD 1310
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 19/123 (15%)
Query: 110 RDRDREERNGRDRNRDRGRDRDRRERD---HDTDRDREKDKE------KEREKSHRSGSQ 160
R +D+E R GR+ +RDR + +E D D+ KD+E R + RS
Sbjct: 144 RSQDKENREGREHHRDREERKGIKESSGSREQKDPDQPKDQESKRDDKDRRRDAERSDKG 203
Query: 161 SERYRS-DRD-ERERSRDREVIERERSRDREVIERERSRDREVIERERSRDRELKEREKE 218
ER R+ DRD ++++SRDR E++++R++E ERE+ R+RE ERER +DR+ K KE
Sbjct: 204 RERERTKDRDRDKDKSRDR---EKDKTREKER-EREKDRNREK-ERERDKDRDKK---KE 255
Query: 219 RES 221
RES
Sbjct: 256 RES 258
>sp|Q5NCR9|NSRP1_MOUSE Nuclear speckle splicing regulatory protein 1 OS=Mus musculus
GN=Nsrp1 PE=1 SV=1
Length = 542
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 33/159 (20%)
Query: 58 HRSRGSKSRDESRNHDRRKERDS-SCHRSWS----RDGGRDRPRSSWEHRDRDTERD--- 109
H SRGS+SR H R+ RD SCH+ S + R R S +H + E++
Sbjct: 301 HHSRGSQSR--GHEHQDRQSRDQESCHKDRSHREEKSSHRHREASHKDHYWKKHEQEDKL 358
Query: 110 RDRDREERNGRDRNRD----RGRDRDRRERDHD-----------------TDRDREKD-- 146
+ R++EER R+ R+ R ++RDR+ DHD R+R +D
Sbjct: 359 KGREQEERQDREGKREKYSSREQERDRQRNDHDRYSEKEKKRKEKEEHTKARRERCEDSG 418
Query: 147 KEKEREKSHRSGSQSERYRSDRDERERSRDREVIERERS 185
K +EREK G SER+R R+ RSR ++ +++ERS
Sbjct: 419 KHREREKPEGHGQSSERHRDRRESSPRSRPKDDLDQERS 457
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.0 bits (84), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNAL 418
R L++GNL ++T +LR FE FG E++++ + + G + F Q++ + A+
Sbjct: 656 RTLFIGNLEKDITAGELRSHFEAFG--EIIEIDIKKQG-LNAYAFCQYSDIVSVVKAM 710
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 13/93 (13%)
Query: 142 DREKDKEKEREKSHRSGSQSERYRSDRDERERS-RDREVIERERSRDREVIERERSRDRE 200
D+E+ +++ REK R E+ + +RD RE+ RD+++ E+E R++E E+E R+++
Sbjct: 1997 DKEQKEKEIREKDLR-----EKEQRERDNREKELRDKDLREKEM-REKEQREKELHREKD 2050
Query: 201 VIERERSRDRELKEREKERESRDNDKESRDNVM 233
R+RE +E+E+ R + D ++E R M
Sbjct: 2051 ------QREREHREKEQSRRAMDVEQEGRGGRM 2077
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,287,349
Number of Sequences: 539616
Number of extensions: 12144639
Number of successful extensions: 150386
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2132
Number of HSP's successfully gapped in prelim test: 2681
Number of HSP's that attempted gapping in prelim test: 56308
Number of HSP's gapped (non-prelim): 31245
length of query: 647
length of database: 191,569,459
effective HSP length: 124
effective length of query: 523
effective length of database: 124,657,075
effective search space: 65195650225
effective search space used: 65195650225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)