Query 006398
Match_columns 647
No_of_seqs 386 out of 3262
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 22:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01622 SF-CC1 splicing fact 100.0 2.7E-52 5.7E-57 453.7 42.3 369 253-645 86-456 (457)
2 KOG0147 Transcriptional coacti 100.0 1.3E-52 2.8E-57 423.3 28.3 367 248-647 171-538 (549)
3 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.6E-49 5.7E-54 436.4 37.4 307 251-642 170-507 (509)
4 TIGR01645 half-pint poly-U bin 100.0 1.1E-41 2.5E-46 363.9 37.4 178 255-440 106-285 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.4E-42 1.4E-46 359.9 34.0 336 256-638 3-350 (352)
6 KOG0145 RNA-binding protein EL 100.0 2.5E-37 5.3E-42 282.6 25.4 308 255-636 40-357 (360)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.5E-36 3.2E-41 328.8 36.0 340 255-636 1-350 (481)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-35 2.6E-40 317.7 28.2 242 255-637 57-307 (578)
9 KOG0117 Heterogeneous nuclear 100.0 5.8E-36 1.3E-40 294.1 23.5 251 254-644 81-338 (506)
10 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-35 3.8E-40 329.1 29.2 252 258-638 2-262 (562)
11 KOG0144 RNA-binding protein CU 100.0 3.4E-35 7.5E-40 287.1 26.1 173 251-441 29-208 (510)
12 KOG0124 Polypyrimidine tract-b 100.0 2E-35 4.2E-40 282.1 21.9 362 257-641 114-539 (544)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-34 3.2E-39 321.7 29.9 268 256-637 88-364 (562)
14 KOG0127 Nucleolar protein fibr 100.0 3.2E-33 7E-38 280.5 29.7 349 257-637 6-378 (678)
15 KOG0120 Splicing factor U2AF, 100.0 3.7E-34 8E-39 294.9 21.3 304 252-644 171-499 (500)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-32 5.9E-37 295.6 33.7 292 257-636 97-479 (481)
17 KOG0148 Apoptosis-promoting RN 100.0 3.2E-32 7E-37 251.2 19.6 230 255-634 5-235 (321)
18 KOG0123 Polyadenylate-binding 100.0 2.2E-30 4.7E-35 265.9 20.1 340 257-640 2-352 (369)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.1E-27 2.4E-32 264.4 27.4 186 357-636 172-374 (509)
20 TIGR01659 sex-lethal sex-letha 100.0 4.4E-28 9.6E-33 247.8 20.5 168 254-440 105-276 (346)
21 KOG0148 Apoptosis-promoting RN 100.0 3.8E-27 8.3E-32 217.7 19.7 179 255-441 61-240 (321)
22 TIGR01622 SF-CC1 splicing fact 99.9 1.4E-26 3.1E-31 251.9 23.2 181 256-439 186-448 (457)
23 KOG0147 Transcriptional coacti 99.9 1.4E-27 3.1E-32 242.1 12.8 261 171-440 190-529 (549)
24 TIGR01659 sex-lethal sex-letha 99.9 1E-25 2.2E-30 230.5 21.1 166 356-638 103-276 (346)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.1E-25 1.3E-29 231.0 22.0 185 256-440 89-350 (352)
26 KOG4212 RNA-binding protein hn 99.9 2.1E-23 4.6E-28 204.5 29.2 182 253-435 41-290 (608)
27 KOG0110 RNA-binding protein (R 99.9 7.8E-25 1.7E-29 228.1 19.8 273 253-639 382-695 (725)
28 TIGR01645 half-pint poly-U bin 99.9 3.8E-24 8.2E-29 229.6 21.2 174 359-638 106-285 (612)
29 KOG1190 Polypyrimidine tract-b 99.9 2.7E-23 5.8E-28 202.6 22.5 319 254-635 26-371 (492)
30 KOG0127 Nucleolar protein fibr 99.9 3.6E-24 7.7E-29 215.8 16.4 184 256-440 117-379 (678)
31 KOG0131 Splicing factor 3b, su 99.9 8.2E-24 1.8E-28 184.8 11.1 169 255-441 8-179 (203)
32 KOG0145 RNA-binding protein EL 99.9 4.9E-23 1.1E-27 189.1 16.0 185 255-439 126-358 (360)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 6.6E-22 1.4E-26 212.3 19.9 165 255-440 137-308 (578)
34 KOG1456 Heterogeneous nuclear 99.9 5E-20 1.1E-24 177.7 28.8 327 254-636 29-362 (494)
35 KOG0117 Heterogeneous nuclear 99.9 2.6E-21 5.7E-26 191.2 20.1 172 253-445 161-337 (506)
36 KOG0146 RNA-binding protein ET 99.9 7.6E-22 1.6E-26 182.0 14.2 270 359-638 18-366 (371)
37 KOG0144 RNA-binding protein CU 99.9 1.4E-21 3E-26 192.1 13.2 165 358-638 32-207 (510)
38 KOG0131 Splicing factor 3b, su 99.9 2.9E-21 6.3E-26 169.0 12.8 162 359-636 8-176 (203)
39 KOG0109 RNA-binding protein LA 99.8 4.5E-21 9.7E-26 179.5 10.8 149 257-441 3-152 (346)
40 KOG0109 RNA-binding protein LA 99.8 2.2E-20 4.7E-25 174.9 10.7 146 361-635 3-148 (346)
41 KOG1190 Polypyrimidine tract-b 99.8 1.8E-18 4E-23 169.1 23.4 288 257-634 151-488 (492)
42 KOG1548 Transcription elongati 99.8 6.4E-19 1.4E-23 169.2 19.7 210 358-636 132-351 (382)
43 KOG0110 RNA-binding protein (R 99.8 2.1E-19 4.6E-24 187.8 11.7 173 258-440 517-694 (725)
44 KOG4211 Splicing factor hnRNP- 99.8 3.8E-17 8.3E-22 164.5 27.3 172 255-438 9-181 (510)
45 KOG0123 Polyadenylate-binding 99.8 2.4E-18 5.3E-23 177.1 16.8 150 362-639 3-155 (369)
46 KOG4205 RNA-binding protein mu 99.8 3.3E-18 7.2E-23 169.4 12.6 177 255-445 5-182 (311)
47 KOG0124 Polypyrimidine tract-b 99.7 1.1E-17 2.3E-22 161.1 12.3 169 360-634 113-287 (544)
48 KOG4206 Spliceosomal protein s 99.7 1.5E-16 3.2E-21 145.8 18.3 207 360-635 9-220 (221)
49 KOG0120 Splicing factor U2AF, 99.7 6E-17 1.3E-21 168.0 16.3 183 256-438 289-491 (500)
50 KOG4206 Spliceosomal protein s 99.7 1.7E-16 3.6E-21 145.4 16.8 176 255-437 8-220 (221)
51 KOG0146 RNA-binding protein ET 99.7 3E-17 6.5E-22 151.8 11.5 185 255-440 18-366 (371)
52 KOG1365 RNA-binding protein Fu 99.7 1.1E-15 2.3E-20 148.5 16.2 297 255-641 59-366 (508)
53 KOG0105 Alternative splicing f 99.7 1.5E-15 3.3E-20 133.1 15.3 164 255-427 5-176 (241)
54 KOG1457 RNA binding protein (c 99.7 4.2E-15 9.1E-20 134.3 16.1 234 359-624 33-273 (284)
55 KOG1548 Transcription elongati 99.6 2.8E-14 6E-19 137.6 18.3 184 254-441 132-354 (382)
56 KOG1456 Heterogeneous nuclear 99.6 8E-13 1.7E-17 128.3 26.4 296 253-637 117-491 (494)
57 KOG0105 Alternative splicing f 99.6 1.3E-13 2.8E-18 121.2 16.9 183 359-636 5-189 (241)
58 PLN03134 glycine-rich RNA-bind 99.6 9.5E-15 2.1E-19 130.8 9.7 83 255-337 33-116 (144)
59 KOG0106 Alternative splicing f 99.5 1.4E-14 3E-19 134.6 8.0 162 257-433 2-165 (216)
60 PLN03134 glycine-rich RNA-bind 99.5 1.1E-13 2.3E-18 124.0 13.1 85 357-441 31-116 (144)
61 KOG4205 RNA-binding protein mu 99.5 1.3E-13 2.8E-18 136.9 10.9 172 359-643 5-182 (311)
62 KOG4212 RNA-binding protein hn 99.5 2.7E-12 5.9E-17 127.0 19.2 238 357-634 41-291 (608)
63 KOG0106 Alternative splicing f 99.4 2.8E-13 6.1E-18 126.0 8.3 167 361-634 2-168 (216)
64 KOG0149 Predicted RNA-binding 99.4 2.3E-13 4.9E-18 125.1 7.1 79 256-334 12-90 (247)
65 PF00076 RRM_1: RNA recognitio 99.4 4.7E-13 1E-17 105.0 7.9 69 259-328 1-70 (70)
66 KOG0125 Ataxin 2-binding prote 99.4 2.4E-12 5.2E-17 123.4 13.4 83 550-642 94-179 (376)
67 KOG0126 Predicted RNA-binding 99.4 3.7E-14 7.9E-19 124.4 0.6 78 254-331 33-111 (219)
68 KOG1365 RNA-binding protein Fu 99.4 2.9E-12 6.2E-17 124.9 13.0 182 257-439 162-362 (508)
69 KOG4211 Splicing factor hnRNP- 99.4 8.4E-12 1.8E-16 126.3 16.6 176 358-643 8-188 (510)
70 COG0724 RNA-binding proteins ( 99.4 3.5E-12 7.6E-17 129.6 13.5 140 256-395 115-260 (306)
71 PF00076 RRM_1: RNA recognitio 99.4 2.1E-12 4.5E-17 101.2 9.1 70 363-432 1-70 (70)
72 KOG1457 RNA binding protein (c 99.4 6.6E-12 1.4E-16 113.9 13.2 168 256-426 34-273 (284)
73 KOG4307 RNA binding protein RB 99.4 1.9E-11 4.2E-16 127.5 18.3 80 253-332 431-511 (944)
74 PF13893 RRM_5: RNA recognitio 99.4 3.2E-12 6.9E-17 95.2 8.5 56 579-634 1-56 (56)
75 PLN03120 nucleic acid binding 99.4 2.1E-12 4.5E-17 123.5 9.0 76 256-334 4-79 (260)
76 PF14259 RRM_6: RNA recognitio 99.4 1.9E-12 4.1E-17 101.5 7.0 69 259-328 1-70 (70)
77 KOG0121 Nuclear cap-binding pr 99.3 3.6E-12 7.7E-17 105.4 7.3 79 254-332 34-113 (153)
78 PF14259 RRM_6: RNA recognitio 99.3 1E-11 2.2E-16 97.3 9.6 70 363-432 1-70 (70)
79 KOG0107 Alternative splicing f 99.3 4.9E-12 1.1E-16 110.8 8.3 76 552-637 10-85 (195)
80 KOG0107 Alternative splicing f 99.3 4.8E-12 1E-16 110.8 8.1 74 256-334 10-84 (195)
81 KOG0122 Translation initiation 99.3 5.3E-12 1.1E-16 116.5 8.2 80 255-334 188-268 (270)
82 KOG4207 Predicted splicing fac 99.3 3.9E-12 8.5E-17 114.0 7.0 88 354-441 7-95 (256)
83 KOG0130 RNA-binding protein RB 99.3 3.8E-12 8.3E-17 106.1 6.4 86 250-335 66-152 (170)
84 KOG0113 U1 small nuclear ribon 99.3 1.2E-11 2.5E-16 117.4 10.4 87 254-340 99-186 (335)
85 PLN03121 nucleic acid binding 99.3 8.2E-12 1.8E-16 117.3 9.3 77 255-334 4-80 (243)
86 KOG0114 Predicted RNA-binding 99.3 2.3E-11 4.9E-16 96.8 9.8 79 551-639 17-97 (124)
87 KOG4207 Predicted splicing fac 99.3 1.1E-11 2.5E-16 111.1 7.2 81 255-335 12-93 (256)
88 PLN03213 repressor of silencin 99.2 2E-11 4.3E-16 122.7 9.4 75 255-333 9-86 (759)
89 KOG4660 Protein Mei2, essentia 99.2 1.3E-10 2.7E-15 119.9 15.4 174 253-438 72-249 (549)
90 KOG0125 Ataxin 2-binding prote 99.2 4.1E-11 8.8E-16 115.1 10.8 84 357-441 93-176 (376)
91 KOG0121 Nuclear cap-binding pr 99.2 1.9E-11 4.1E-16 101.2 7.3 84 358-441 34-118 (153)
92 KOG0114 Predicted RNA-binding 99.2 4.1E-11 8.9E-16 95.4 8.0 80 255-337 17-97 (124)
93 PLN03120 nucleic acid binding 99.2 5.8E-11 1.3E-15 113.6 10.4 79 360-441 4-82 (260)
94 KOG0113 U1 small nuclear ribon 99.2 7E-11 1.5E-15 112.1 10.1 85 356-440 97-182 (335)
95 KOG0122 Translation initiation 99.2 4.8E-11 1E-15 110.2 8.8 82 358-439 187-269 (270)
96 KOG0130 RNA-binding protein RB 99.2 4.6E-11 1E-15 99.7 7.7 84 358-441 70-154 (170)
97 KOG0126 Predicted RNA-binding 99.2 4.1E-12 8.8E-17 111.7 0.6 82 360-441 35-117 (219)
98 smart00362 RRM_2 RNA recogniti 99.2 9.8E-11 2.1E-15 91.7 8.2 71 258-330 1-72 (72)
99 KOG0132 RNA polymerase II C-te 99.2 2.1E-09 4.5E-14 114.4 19.7 76 254-335 419-495 (894)
100 KOG0111 Cyclophilin-type pepti 99.1 3.4E-11 7.3E-16 108.9 4.9 83 255-337 9-92 (298)
101 KOG4307 RNA binding protein RB 99.1 9.6E-10 2.1E-14 115.1 16.0 81 549-639 431-516 (944)
102 PLN03121 nucleic acid binding 99.1 3.4E-10 7.4E-15 106.5 11.6 80 359-441 4-83 (243)
103 smart00360 RRM RNA recognition 99.1 1.5E-10 3.2E-15 90.3 7.6 69 261-329 1-70 (71)
104 smart00362 RRM_2 RNA recogniti 99.1 3.6E-10 7.7E-15 88.5 9.2 71 362-433 1-71 (72)
105 PLN03213 repressor of silencin 99.1 2.3E-10 4.9E-15 115.2 8.8 79 359-440 9-89 (759)
106 KOG0149 Predicted RNA-binding 99.1 1.3E-10 2.8E-15 107.2 6.3 80 358-438 10-90 (247)
107 cd00590 RRM RRM (RNA recogniti 99.1 1.2E-09 2.6E-14 85.9 9.7 74 362-435 1-74 (74)
108 KOG0108 mRNA cleavage and poly 99.0 4.2E-10 9E-15 117.1 7.9 80 257-336 19-99 (435)
109 cd00590 RRM RRM (RNA recogniti 99.0 1.1E-09 2.4E-14 86.1 8.6 72 258-330 1-73 (74)
110 smart00360 RRM RNA recognition 99.0 8.9E-10 1.9E-14 85.8 8.0 70 365-434 1-71 (71)
111 COG0724 RNA-binding proteins ( 99.0 2.6E-09 5.6E-14 108.4 13.5 79 360-438 115-194 (306)
112 KOG0111 Cyclophilin-type pepti 99.0 2.4E-10 5.2E-15 103.5 4.9 84 358-441 8-92 (298)
113 KOG0128 RNA-binding protein SA 99.0 3.1E-11 6.7E-16 129.7 -2.1 237 257-636 572-814 (881)
114 PF13893 RRM_5: RNA recognitio 99.0 2.1E-09 4.6E-14 79.8 8.4 56 377-436 1-56 (56)
115 smart00361 RRM_1 RNA recogniti 99.0 1.6E-09 3.5E-14 84.5 7.6 58 575-632 5-70 (70)
116 KOG0129 Predicted RNA-binding 99.0 7.8E-09 1.7E-13 106.0 13.3 163 254-420 257-432 (520)
117 KOG0108 mRNA cleavage and poly 99.0 2E-09 4.3E-14 112.1 9.3 80 361-440 19-99 (435)
118 KOG4454 RNA binding protein (R 98.9 2.8E-10 6.1E-15 103.2 1.2 148 256-433 9-157 (267)
119 smart00361 RRM_1 RNA recogniti 98.9 3.9E-09 8.5E-14 82.3 6.7 60 270-329 2-69 (70)
120 KOG0128 RNA-binding protein SA 98.9 2.1E-10 4.5E-15 123.5 -1.5 150 254-438 665-814 (881)
121 KOG1996 mRNA splicing factor [ 98.8 4.4E-09 9.6E-14 99.4 5.9 89 549-642 278-372 (378)
122 KOG4676 Splicing factor, argin 98.8 2.2E-09 4.7E-14 105.5 3.6 214 361-637 8-226 (479)
123 KOG0112 Large RNA-binding prot 98.8 3.5E-09 7.5E-14 114.7 5.1 162 253-441 369-533 (975)
124 KOG0132 RNA polymerase II C-te 98.8 7.8E-08 1.7E-12 102.7 13.3 77 360-441 421-497 (894)
125 KOG4208 Nucleolar RNA-binding 98.8 1.2E-08 2.6E-13 92.5 6.2 81 255-335 48-130 (214)
126 KOG4210 Nuclear localization s 98.8 5.3E-09 1.2E-13 104.1 4.3 177 255-440 87-265 (285)
127 KOG0415 Predicted peptidyl pro 98.7 1.6E-08 3.4E-13 98.2 6.4 85 356-440 235-320 (479)
128 KOG0112 Large RNA-binding prot 98.7 8.4E-09 1.8E-13 111.7 4.4 159 358-636 370-530 (975)
129 KOG0129 Predicted RNA-binding 98.6 5.2E-07 1.1E-11 92.8 14.7 163 358-618 257-432 (520)
130 KOG4208 Nucleolar RNA-binding 98.6 9.3E-08 2E-12 86.8 8.1 82 358-439 47-130 (214)
131 KOG0415 Predicted peptidyl pro 98.6 6.4E-08 1.4E-12 94.0 6.7 83 254-336 237-320 (479)
132 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.2E-07 2.6E-12 97.5 8.3 80 254-333 403-483 (940)
133 KOG4661 Hsp27-ERE-TATA-binding 98.6 3E-07 6.5E-12 94.5 9.9 77 549-635 402-483 (940)
134 KOG0153 Predicted RNA-binding 98.5 1.9E-07 4.2E-12 91.0 7.0 77 252-334 224-302 (377)
135 KOG0153 Predicted RNA-binding 98.5 4.6E-07 9.9E-12 88.5 8.9 82 352-438 220-302 (377)
136 PF11608 Limkain-b1: Limkain b 98.5 8.4E-07 1.8E-11 68.6 8.2 75 553-638 3-78 (90)
137 KOG4676 Splicing factor, argin 98.5 1.2E-07 2.5E-12 93.6 4.2 167 257-427 8-214 (479)
138 KOG2193 IGF-II mRNA-binding pr 98.5 1.6E-08 3.5E-13 100.2 -1.8 159 361-644 2-164 (584)
139 KOG2202 U2 snRNP splicing fact 98.5 6.8E-08 1.5E-12 90.8 2.1 71 571-641 77-152 (260)
140 KOG0533 RRM motif-containing p 98.4 6.1E-07 1.3E-11 86.0 8.1 84 358-441 81-164 (243)
141 KOG4454 RNA binding protein (R 98.4 1.6E-07 3.4E-12 85.7 2.8 80 358-438 7-86 (267)
142 KOG0533 RRM motif-containing p 98.4 8E-07 1.7E-11 85.2 7.8 77 255-332 82-159 (243)
143 KOG4660 Protein Mei2, essentia 98.4 2.8E-07 6.1E-12 95.6 4.7 71 358-432 73-143 (549)
144 KOG4209 Splicing factor RNPS1, 98.3 5E-07 1.1E-11 87.0 5.0 82 251-332 96-177 (231)
145 KOG0226 RNA-binding proteins [ 98.3 7.6E-07 1.6E-11 83.2 4.6 69 554-632 192-265 (290)
146 KOG0116 RasGAP SH3 binding pro 98.3 1.9E-06 4.1E-11 89.5 7.8 77 255-331 287-363 (419)
147 KOG4210 Nuclear localization s 98.3 8.6E-07 1.9E-11 88.4 5.0 174 359-639 87-266 (285)
148 PF04059 RRM_2: RNA recognitio 98.2 1.2E-05 2.5E-10 65.9 8.5 78 361-438 2-86 (97)
149 KOG0226 RNA-binding proteins [ 98.1 2.5E-06 5.4E-11 79.8 3.9 169 258-440 98-271 (290)
150 KOG0151 Predicted splicing reg 98.1 1.1E-05 2.4E-10 85.8 9.1 85 541-635 163-255 (877)
151 KOG2193 IGF-II mRNA-binding pr 98.1 3.9E-07 8.4E-12 90.7 -1.7 156 257-441 2-159 (584)
152 PF04059 RRM_2: RNA recognitio 98.1 1.9E-05 4.1E-10 64.7 8.3 77 257-333 2-85 (97)
153 KOG0151 Predicted splicing reg 98.0 3.3E-05 7.1E-10 82.3 11.2 85 357-441 171-259 (877)
154 KOG4209 Splicing factor RNPS1, 98.0 1.2E-05 2.6E-10 77.5 6.1 82 358-440 99-181 (231)
155 PF08777 RRM_3: RNA binding mo 98.0 1.8E-05 4E-10 66.5 6.1 80 553-643 2-86 (105)
156 KOG1995 Conserved Zn-finger pr 97.9 1.4E-05 3E-10 79.1 4.6 83 254-336 64-155 (351)
157 PF08952 DUF1866: Domain of un 97.8 0.00013 2.8E-09 63.8 9.8 87 547-638 22-108 (146)
158 PF05172 Nup35_RRM: Nup53/35/4 97.8 7.5E-05 1.6E-09 61.6 6.7 73 552-636 6-91 (100)
159 KOG0116 RasGAP SH3 binding pro 97.7 4.6E-05 1E-09 79.4 6.0 78 361-439 289-367 (419)
160 KOG2416 Acinus (induces apopto 97.7 9.6E-05 2.1E-09 77.3 7.1 84 548-642 440-527 (718)
161 KOG4849 mRNA cleavage factor I 97.7 0.00029 6.3E-09 68.9 9.8 78 359-436 79-159 (498)
162 PF11608 Limkain-b1: Limkain b 97.6 0.00019 4E-09 55.8 6.2 68 257-334 3-76 (90)
163 KOG2314 Translation initiation 97.5 0.00027 5.8E-09 73.7 8.3 83 551-637 57-144 (698)
164 KOG1995 Conserved Zn-finger pr 97.5 0.00011 2.4E-09 72.8 4.4 85 357-441 63-156 (351)
165 KOG1855 Predicted RNA-binding 97.5 0.00013 2.9E-09 73.5 4.8 70 544-623 223-310 (484)
166 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00058 1.3E-08 49.5 5.3 52 553-616 2-53 (53)
167 PF08777 RRM_3: RNA binding mo 97.3 0.00046 1E-08 58.0 5.4 70 361-435 2-76 (105)
168 COG5175 MOT2 Transcriptional r 97.3 0.00071 1.5E-08 66.0 7.0 80 553-636 115-202 (480)
169 KOG4849 mRNA cleavage factor I 97.2 0.00028 6E-09 69.1 4.0 79 254-332 78-159 (498)
170 KOG1996 mRNA splicing factor [ 97.0 0.0016 3.5E-08 62.5 6.4 78 360-437 281-365 (378)
171 KOG2202 U2 snRNP splicing fact 96.9 0.00032 7E-09 66.4 1.4 65 375-439 83-148 (260)
172 KOG2314 Translation initiation 96.9 0.0032 6.9E-08 65.9 8.3 79 360-438 58-143 (698)
173 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0032 6.9E-08 52.1 6.1 77 256-333 6-90 (100)
174 COG5175 MOT2 Transcriptional r 96.8 0.0028 6.1E-08 62.0 6.2 84 357-440 111-204 (480)
175 KOG2416 Acinus (induces apopto 96.7 0.0015 3.2E-08 68.7 4.3 80 356-440 440-523 (718)
176 KOG3152 TBP-binding protein, a 96.7 0.001 2.2E-08 62.9 2.5 72 256-327 74-158 (278)
177 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0036 7.9E-08 45.3 4.4 52 257-315 2-53 (53)
178 KOG0115 RNA-binding protein p5 96.5 0.0054 1.2E-07 58.2 5.9 86 310-421 6-92 (275)
179 KOG1855 Predicted RNA-binding 96.0 0.0061 1.3E-07 61.9 3.9 70 249-318 224-306 (484)
180 PF08952 DUF1866: Domain of un 96.0 0.019 4.1E-07 50.5 6.3 71 255-333 26-105 (146)
181 KOG3152 TBP-binding protein, a 96.0 0.0045 9.8E-08 58.6 2.6 71 360-430 74-157 (278)
182 PF04847 Calcipressin: Calcipr 95.9 0.019 4.2E-07 53.4 6.3 62 575-637 8-71 (184)
183 KOG4285 Mitotic phosphoprotein 95.6 0.11 2.4E-06 50.6 10.4 73 552-637 197-270 (350)
184 PF08675 RNA_bind: RNA binding 95.4 0.089 1.9E-06 41.2 7.3 54 361-422 10-63 (87)
185 KOG2135 Proteins containing th 95.4 0.038 8.1E-07 57.1 6.8 72 554-636 374-445 (526)
186 PF15023 DUF4523: Protein of u 95.3 0.07 1.5E-06 46.1 7.0 55 577-634 105-159 (166)
187 PF08675 RNA_bind: RNA binding 95.2 0.068 1.5E-06 41.9 5.9 42 576-620 22-63 (87)
188 PF15519 RBM39linker: linker b 95.0 0.015 3.2E-07 45.1 1.9 25 455-479 5-29 (73)
189 PF08648 DUF1777: Protein of u 94.6 0.065 1.4E-06 50.2 5.7 7 301-307 134-140 (180)
190 KOG0115 RNA-binding protein p5 94.5 0.094 2E-06 50.1 6.3 76 257-333 32-112 (275)
191 KOG0670 U4/U6-associated splic 94.3 0.076 1.6E-06 56.1 5.7 9 377-385 520-528 (752)
192 KOG2548 SWAP mRNA splicing reg 94.2 0.063 1.4E-06 56.0 4.8 11 262-272 555-565 (653)
193 KOG0670 U4/U6-associated splic 94.2 0.074 1.6E-06 56.2 5.4 7 259-265 346-352 (752)
194 KOG4574 RNA-binding protein (c 94.1 0.13 2.8E-06 57.0 7.3 63 576-639 312-376 (1007)
195 KOG4285 Mitotic phosphoprotein 92.8 0.42 9E-06 46.8 7.6 77 256-339 197-274 (350)
196 PF07576 BRAP2: BRCA1-associat 92.7 1 2.2E-05 38.1 9.0 77 360-437 13-93 (110)
197 KOG4574 RNA-binding protein (c 92.6 0.48 1E-05 52.8 8.6 75 362-441 300-376 (1007)
198 PF07292 NID: Nmi/IFP 35 domai 92.5 0.1 2.2E-06 41.9 2.5 72 301-382 1-74 (88)
199 KOG2253 U1 snRNP complex, subu 92.4 0.012 2.6E-07 63.3 -3.7 71 252-331 36-107 (668)
200 KOG0804 Cytoplasmic Zn-finger 92.3 0.98 2.1E-05 46.8 9.9 67 256-324 74-142 (493)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 92.2 0.47 1E-05 44.1 7.0 81 360-440 7-99 (176)
202 PF10309 DUF2414: Protein of u 92.0 0.73 1.6E-05 34.3 6.4 55 360-421 5-62 (62)
203 KOG2253 U1 snRNP complex, subu 92.0 0.21 4.6E-06 54.0 5.0 70 550-633 38-107 (668)
204 PF10309 DUF2414: Protein of u 91.7 0.79 1.7E-05 34.2 6.2 55 552-619 5-62 (62)
205 PF15023 DUF4523: Protein of u 90.7 0.94 2E-05 39.4 6.6 72 358-436 84-159 (166)
206 PF07576 BRAP2: BRCA1-associat 90.7 1.9 4.1E-05 36.5 8.5 66 257-324 14-81 (110)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 90.0 0.27 5.9E-06 45.6 3.2 70 255-324 6-82 (176)
208 KOG2318 Uncharacterized conser 89.4 2 4.4E-05 46.0 9.2 84 358-441 172-310 (650)
209 KOG2135 Proteins containing th 89.2 0.22 4.8E-06 51.6 2.0 75 253-333 369-444 (526)
210 PF04847 Calcipressin: Calcipr 89.1 0.92 2E-05 42.3 5.9 61 373-438 8-70 (184)
211 KOG2068 MOT2 transcription fac 89.0 0.16 3.4E-06 50.8 0.8 77 256-332 77-160 (327)
212 PF11767 SET_assoc: Histone ly 88.1 2.4 5.2E-05 32.1 6.5 52 576-631 14-65 (66)
213 PF11767 SET_assoc: Histone ly 88.1 2.3 5.1E-05 32.2 6.4 55 371-433 11-65 (66)
214 PF10567 Nab6_mRNP_bdg: RNA-re 87.9 12 0.00027 36.9 12.7 82 359-440 14-109 (309)
215 KOG2591 c-Mpl binding protein, 87.7 0.91 2E-05 48.2 5.3 69 552-632 175-247 (684)
216 KOG4019 Calcineurin-mediated s 87.3 0.58 1.3E-05 42.4 3.2 62 577-639 30-92 (193)
217 KOG1847 mRNA splicing factor [ 87.0 0.87 1.9E-05 49.1 4.8 8 262-269 851-858 (878)
218 KOG0804 Cytoplasmic Zn-finger 85.9 2.2 4.8E-05 44.3 6.9 77 360-437 74-154 (493)
219 KOG2068 MOT2 transcription fac 85.2 0.38 8.2E-06 48.1 1.1 57 581-637 99-163 (327)
220 KOG4246 Predicted DNA-binding 83.1 0.52 1.1E-05 52.2 1.1 7 554-560 903-909 (1194)
221 KOG2591 c-Mpl binding protein, 82.3 2.8 6.1E-05 44.7 6.0 70 360-435 175-248 (684)
222 KOG2318 Uncharacterized conser 82.2 5.3 0.00011 43.0 8.0 81 548-637 170-308 (650)
223 PF03880 DbpA: DbpA RNA bindin 81.3 2.4 5.3E-05 33.0 4.0 55 576-634 15-74 (74)
224 PF10567 Nab6_mRNP_bdg: RNA-re 80.1 45 0.00097 33.2 12.8 166 255-422 14-212 (309)
225 PF03880 DbpA: DbpA RNA bindin 79.9 6.5 0.00014 30.6 6.0 59 370-436 11-74 (74)
226 PF14111 DUF4283: Domain of un 74.2 3.8 8.2E-05 36.9 3.8 121 257-395 16-140 (153)
227 KOG4019 Calcineurin-mediated s 65.9 23 0.0005 32.4 6.7 77 360-441 10-92 (193)
228 KOG4410 5-formyltetrahydrofola 63.8 21 0.00045 34.9 6.4 51 357-412 327-378 (396)
229 PF15513 DUF4651: Domain of un 55.0 31 0.00068 25.6 4.6 23 574-596 6-28 (62)
230 cd04908 ACT_Bt0572_1 N-termina 54.5 88 0.0019 23.3 8.1 47 576-623 15-63 (66)
231 COG5470 Uncharacterized conser 53.4 33 0.00071 27.9 4.8 52 565-616 11-70 (96)
232 COG5638 Uncharacterized conser 48.7 57 0.0012 33.7 6.9 84 357-440 143-299 (622)
233 smart00596 PRE_C2HC PRE_C2HC d 44.9 62 0.0013 24.7 4.9 60 271-332 2-62 (69)
234 KOG4410 5-formyltetrahydrofola 43.8 65 0.0014 31.7 6.1 49 257-311 331-380 (396)
235 KOG4483 Uncharacterized conser 40.8 43 0.00093 34.5 4.7 58 359-422 390-448 (528)
236 PF07530 PRE_C2HC: Associated 37.5 89 0.0019 23.9 4.9 60 271-332 2-62 (68)
237 KOG4213 RNA-binding protein La 36.7 24 0.00051 32.2 1.9 69 256-329 111-181 (205)
238 KOG2891 Surface glycoprotein [ 36.1 40 0.00087 32.8 3.5 51 256-306 149-216 (445)
239 KOG4483 Uncharacterized conser 36.1 60 0.0013 33.5 4.9 56 255-317 390-446 (528)
240 COG5638 Uncharacterized conser 35.9 1.3E+02 0.0029 31.1 7.2 37 601-637 260-298 (622)
241 KOG1924 RhoA GTPase effector D 34.8 1.3E+02 0.0028 34.3 7.4 12 575-586 658-669 (1102)
242 KOG4213 RNA-binding protein La 34.2 82 0.0018 28.9 4.9 54 576-632 123-182 (205)
243 PF07237 DUF1428: Protein of u 33.8 1E+02 0.0023 25.6 5.1 55 566-620 12-86 (103)
244 COG1369 POP5 RNase P/RNase MRP 33.6 2.3E+02 0.005 24.5 7.2 77 555-633 18-99 (124)
245 PF03468 XS: XS domain; Inter 33.3 54 0.0012 28.1 3.6 57 258-317 10-76 (116)
246 PF03439 Spt5-NGN: Early trans 33.3 73 0.0016 25.4 4.1 39 588-626 33-71 (84)
247 PF11671 Apis_Csd: Complementa 33.1 6.2 0.00014 33.5 -2.1 11 257-267 86-96 (146)
248 KOG1295 Nonsense-mediated deca 32.4 62 0.0013 33.5 4.3 68 360-427 7-78 (376)
249 PF03468 XS: XS domain; Inter 31.6 82 0.0018 27.0 4.4 64 554-619 10-76 (116)
250 PF08734 GYD: GYD domain; Int 29.4 1.7E+02 0.0036 23.8 5.7 65 575-640 21-87 (91)
251 PF03439 Spt5-NGN: Early trans 27.9 1.3E+02 0.0028 23.9 4.8 37 386-426 33-69 (84)
252 PRK08559 nusG transcription an 25.9 1.5E+02 0.0033 26.7 5.3 49 575-623 21-70 (153)
253 KOG4008 rRNA processing protei 24.8 1.1E+02 0.0024 29.4 4.2 32 255-286 39-70 (261)
254 KOG1882 Transcriptional regula 24.7 56 0.0012 31.4 2.3 13 400-412 215-227 (293)
255 PF13820 Nucleic_acid_bd: Puta 24.5 2.6E+02 0.0057 25.1 6.4 61 554-621 6-67 (149)
256 PF08544 GHMP_kinases_C: GHMP 24.2 2.7E+02 0.0059 21.5 6.1 44 576-620 36-80 (85)
257 KOG0334 RNA helicase [RNA proc 23.9 36 0.00077 39.9 1.1 20 601-620 953-972 (997)
258 KOG4008 rRNA processing protei 23.9 43 0.00093 32.1 1.4 35 359-393 39-73 (261)
259 KOG2891 Surface glycoprotein [ 23.1 2E+02 0.0043 28.2 5.7 68 358-425 147-246 (445)
260 PRK14548 50S ribosomal protein 22.6 4.1E+02 0.0088 21.3 7.2 56 258-316 22-79 (84)
261 PF09902 DUF2129: Uncharacteri 21.9 3E+02 0.0065 21.3 5.4 51 554-625 5-55 (71)
262 KOG1295 Nonsense-mediated deca 21.8 59 0.0013 33.6 2.0 68 256-323 7-78 (376)
263 cd04889 ACT_PDH-BS-like C-term 21.7 3E+02 0.0064 19.4 7.0 41 576-616 12-55 (56)
264 PF11823 DUF3343: Protein of u 21.0 1.3E+02 0.0027 23.2 3.4 25 600-624 2-26 (73)
265 PF08156 NOP5NT: NOP5NT (NUC12 20.9 37 0.00079 25.9 0.3 39 577-620 27-65 (67)
266 KOG0334 RNA helicase [RNA proc 20.9 41 0.00089 39.4 0.8 12 404-415 441-452 (997)
267 PF14111 DUF4283: Domain of un 20.4 53 0.0011 29.3 1.3 61 572-636 31-91 (153)
268 PRK03717 ribonuclease P protei 20.3 5.6E+02 0.012 22.0 8.1 66 565-633 28-99 (120)
269 KOG2295 C2H2 Zn-finger protein 20.2 17 0.00036 39.1 -2.2 67 360-426 231-298 (648)
270 TIGR03636 L23_arch archaeal ri 20.1 4.4E+02 0.0095 20.7 7.3 56 258-316 15-72 (77)
No 1
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.7e-52 Score=453.75 Aligned_cols=369 Identities=48% Similarity=0.749 Sum_probs=270.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
....++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||+|+|..|.|++|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCH
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 411 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~ 411 (647)
............. .........+|||+|||..+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.
T Consensus 166 ~~~~~~~~~~~~~-------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 166 QAEKNRAAKAATH-------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred chhhhhhhhcccc-------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 5443322111110 0011223789999999999999999999999999999999988 4778999999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCC
Q 006398 412 EDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTP 491 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (647)
++|.+|+..|+|+.|.|+.|.|.|+.+....... .............+...+......++..+...+.. +....|
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 313 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGD----GGLLIP 313 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCC----ccccCC
Confidence 9999999999999999999999998855433222 21222233333333444444455555554433321 111111
Q ss_pred cccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhh
Q 006398 492 AVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEF 571 (647)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~ 571 (647)
........+.. +.....+...++....... .........++ ......++.||+|.||+.+.+..++.+
T Consensus 314 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~l~l~n~~~~~~~~~~~~ 381 (457)
T TIGR01622 314 GTGSKIALMQK---LQRDGIIDPNIPSRYATGA--------LAIMARNSFVP-STNNNLATTCLVLSNMFDPATEEEPNF 381 (457)
T ss_pred Cccchhhhhcc---ccccccccccccccccccc--------cccccCCCCCC-cccCCCCCcEEEEecCCCCcccccchH
Confidence 11111111111 1111111111110000000 00000000000 011345788999999999999999999
Q ss_pred hhhHHHHHHHHhhhcCCeEEEEEe-eCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccCCC
Q 006398 572 DMDIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPD 645 (647)
Q Consensus 572 ~~~~~~dl~~~F~~fG~V~~v~i~-~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~~~ 645 (647)
+++|++||+++|++||.|+.|.|. ..+.|+|||+|.++++|..|++.|||+.|+|+.|.|.|++++.|.+.||.
T Consensus 382 ~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~~~ 456 (457)
T TIGR01622 382 DNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVYDMSCLP 456 (457)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhcCC
Confidence 999999999999999999999997 55789999999999999999999999999999999999999999999986
No 2
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=1.3e-52 Score=423.28 Aligned_cols=367 Identities=50% Similarity=0.778 Sum_probs=290.9
Q ss_pred CCCCCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceE
Q 006398 248 PEVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPV 327 (647)
Q Consensus 248 ~~~~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i 327 (647)
.....++..++||+-.|+..+++.+|.+||+.+|.|..|.||.|.+++.++|.|||+|.+.+....||.|.|+.++|.+|
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv 250 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPV 250 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCcee
Confidence 34445667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEE
Q 006398 328 MVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFV 406 (647)
Q Consensus 328 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afV 406 (647)
.|+.....+........+.. ......+...|||+||.+.+++++|..+|++||.|..|.+.++. +|.++||+||
T Consensus 251 ~vq~sEaeknr~a~~s~a~~-----~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi 325 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQ-----GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFI 325 (549)
T ss_pred EecccHHHHHHHHhcccccc-----ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceE
Confidence 99998887776333322221 11122334449999999999999999999999999999999995 9999999999
Q ss_pred EeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCC
Q 006398 407 QFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAG 486 (647)
Q Consensus 407 ef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (647)
+|.+.++|.+|++.|||+.|.|+.|+|....+....... .....+++....+++++.+...++++.++++..... +..
T Consensus 326 ~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a-~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~-~~s 403 (549)
T KOG0147|consen 326 TFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEA-AVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS-LPS 403 (549)
T ss_pred EEecHHHHHHHHHHhccceecCceEEEEEeeeecccccc-cccccccchhhccccccccccHHHHHHHHhccCCcc-ccc
Confidence 999999999999999999999999999999998876655 224445555566677766666778888887655221 111
Q ss_pred CCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCC
Q 006398 487 SAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE 566 (647)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~ 566 (647)
.+.........+. ++..... +.. .....|....|.+ ..++.||.|+|||.|.+.
T Consensus 404 ~~~~~l~~~~~~~------------~~~~~~~-----~~~------~~~~~p~~~~p~~---~i~t~C~lL~nMFdpste 457 (549)
T KOG0147|consen 404 TAISALLLLAKLA------------SAAQFNG-----VVR------VRSVDPADASPAF---DIPTQCLLLSNMFDPSTE 457 (549)
T ss_pred hhhhHHHhccccc------------hHHhhcC-----CcC------ccccCcccccccc---CCccHHHHHhhcCCcccc
Confidence 1000000000000 0000000 000 0011111112222 268899999999999999
Q ss_pred CchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccCCCC
Q 006398 567 TYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFPDS 646 (647)
Q Consensus 567 ~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~~~~ 646 (647)
|.+.|..+|.+||.+.|++||.|..|.|++++-||+||.|.+++.|..|+.+|||..|.|+.|++.|.+...|...||++
T Consensus 458 te~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP~~ 537 (549)
T KOG0147|consen 458 TEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFPDS 537 (549)
T ss_pred cCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 006398 647 I 647 (647)
Q Consensus 647 ~ 647 (647)
+
T Consensus 538 ~ 538 (549)
T KOG0147|consen 538 K 538 (549)
T ss_pred c
Confidence 4
No 3
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.6e-49 Score=436.40 Aligned_cols=307 Identities=23% Similarity=0.352 Sum_probs=233.9
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHHHhc------------CCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhc
Q 006398 251 DPERDQRTVFAYQICLKADERDVYEFFSRA------------GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALS 318 (647)
Q Consensus 251 ~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~------------G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~ 318 (647)
..+...++|||||||+.+|+++|.++|..| +.|..+.+ +..+|||||+|.++++|..||+|+
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCC
Confidence 446678999999999999999999999875 23444443 457899999999999999999999
Q ss_pred CCccCCceEEEccCcchhhhccccc--ccCCC----C----CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEE
Q 006398 319 GQPLLGQPVMVKPSEAEKNLVQSNS--SIAGA----S----GGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE 388 (647)
Q Consensus 319 g~~~~g~~i~v~~~~~~~~~~~~~~--~~~~~----~----~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~ 388 (647)
|..|.|..|+|.............. ..... . ............+|||+|||+.+++++|.++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 9999999999964432211100000 00000 0 001112234568999999999999999999999999999
Q ss_pred EEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHH
Q 006398 389 LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARS 467 (647)
Q Consensus 389 ~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (647)
.+.|+.+ .+|.++|||||+|.+.+.|..||..|+|+.|+|+.|.|.++........... .. +..+..
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~--------~~-~~~~~~--- 391 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDT--------SN-GMAPVT--- 391 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccc--------cc-cccccc---
Confidence 9999888 5889999999999999999999999999999999999999865432110000 00 000000
Q ss_pred HHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCC
Q 006398 468 RALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDT 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (647)
. .. ..........
T Consensus 392 --------------------------------~--------------~~---------------------~~~~~~~~~~ 404 (509)
T TIGR01642 392 --------------------------------L--------------LA---------------------KALSQSILQI 404 (509)
T ss_pred --------------------------------c--------------cc---------------------ccchhhhccc
Confidence 0 00 0000000011
Q ss_pred CCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC--------CCccEEEEeCChHHHHHHHHHH
Q 006398 548 IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--------SAGFVYLRFENTQSAFAAQRAL 619 (647)
Q Consensus 548 ~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~--------~~G~afV~F~~~e~A~~A~~~l 619 (647)
.+.++.+|+|.||+.+.++.++++|++|.++|.++|++||.|+.|.|+++ +.|+|||+|.++++|+.|+..|
T Consensus 405 ~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 405 GGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred cCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc
Confidence 23477899999999999999999999999999999999999999999753 3589999999999999999999
Q ss_pred cCceeCCeEEEEEEeCchhhhcc
Q 006398 620 HGRWFAGKMITATFMVPQTYEAK 642 (647)
Q Consensus 620 nG~~~~gr~i~v~~~~~~~~~~~ 642 (647)
||..|+|++|.|.|+++..|.+.
T Consensus 485 nGr~~~gr~v~~~~~~~~~~~~~ 507 (509)
T TIGR01642 485 NGRKFNDRVVVAAFYGEDCYKAG 507 (509)
T ss_pred CCCEECCeEEEEEEeCHHHhhcc
Confidence 99999999999999999999764
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-41 Score=363.89 Aligned_cols=178 Identities=20% Similarity=0.357 Sum_probs=153.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
..++|||||||+.+++++|+++|.+||.|..|.|+.++.||.++|||||+|.+.++|..||+ |||..|.|+.|.|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999997 99999999999997532
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
....... .............+|||+|||+.+++++|+++|+.||.|..|.|..+ .++.++|||||+|.+.+
T Consensus 186 ~~p~a~~--------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 186 NMPQAQP--------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccc--------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 2111000 00001111234578999999999999999999999999999999998 47789999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
+|..||..||++.|+|+.|+|.++..+.
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999999999988643
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.4e-42 Score=359.93 Aligned_cols=336 Identities=17% Similarity=0.280 Sum_probs=227.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
..+|||+|||+.+|+++|+++|..||+|..|.|+.++.+|.++|||||+|.+.++|..||+ |+|..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4699999999999999999999999999999999999999999999999999999999997 999999999999987643
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~ 413 (647)
... .....+|||+|||..+++++|..+|.+||.|..+.++.+ .++.++|||||+|.+.++
T Consensus 83 ~~~-------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~ 143 (352)
T TIGR01661 83 SSD-------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDE 143 (352)
T ss_pred ccc-------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 221 122468999999999999999999999999999998887 477889999999999999
Q ss_pred HHHHHHHcCCceecC--eEEEEEEeecCCCCCCCCC-CCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCC
Q 006398 414 ARNALNLNGQLEIVG--RAIKVSAVTDQSGLQDLGA-NTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 490 (647)
Q Consensus 414 A~~Al~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (647)
|..|++.|+|..+.| ..|.|.++........... .....+........++... ..+...+.
T Consensus 144 A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~ 207 (352)
T TIGR01661 144 ADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTI----------------LTAAGIGP 207 (352)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccc----------------ccccCCCC
Confidence 999999999998877 5788888765442110000 0000000000000000000 00000000
Q ss_pred CcccCCCCCC--CCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCc
Q 006398 491 PAVNSTALPL--PTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETY 568 (647)
Q Consensus 491 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d 568 (647)
.......+.. ................++........++. ....................+.+|||+|| |..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lfV~NL--~~~~~- 282 (352)
T TIGR01661 208 MHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA--TDGQTAGLAAGAQIAASDGAGYCIFVYNL--SPDTD- 282 (352)
T ss_pred ccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc--ccccccccccCCCCCCCCCCCcEEEEeCC--CCCCC-
Confidence 0000000000 00000000000000000000000000000 00000000000011111345568999999 77776
Q ss_pred hhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchh
Q 006398 569 EEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 638 (647)
Q Consensus 569 ~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~ 638 (647)
+++|.++|++||.|..|+|+.+ ++|||||+|.++++|..|+..|||..|+|++|+|.|++...
T Consensus 283 -------e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 283 -------ETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred -------HHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 7999999999999999999765 58999999999999999999999999999999999987654
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=282.59 Aligned_cols=308 Identities=19% Similarity=0.310 Sum_probs=226.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
....|+|.=||.++|.++|+.+|...|.|+.|++++|+.+|.+-||+||.|.++++|++|+. |||..+..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44678999999999999999999999999999999999999999999999999999999997 99999999999999886
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
+.... .....|||.+||..++..+|.++|.+||.|..-.|..+ -+|.++|.+||.|....
T Consensus 120 PSs~~-------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 120 PSSDS-------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred CChhh-------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 54432 23467999999999999999999999999877777777 58999999999999999
Q ss_pred HHHHHHHHcCCceecC--eEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCC
Q 006398 413 DARNALNLNGQLEIVG--RAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 490 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (647)
+|..||..|||..-.| .+|.|.|+...... ...+.+.+.+...+ ..+++ .
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPsq~-----------------------t~~a~ls~ly~sp~--rr~~G---p 232 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPSQK-----------------------TNQALLSQLYQSPA--RRYGG---P 232 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcccc-----------------------cchhhhHHhhcCcc--ccCCC---c
Confidence 9999999999987766 48999998765321 01112222222211 00000 0
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccc-cCCCCCcCccCCCCCCcceEEeccCCCCCCCCch
Q 006398 491 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTAL-QVPTASVPIFDTIGVPSECLLLKNMFDPKNETYE 569 (647)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~ 569 (647)
.+-..+.+..-+.. .+. .....++++....+ ......+ ........||||.|| ..++.
T Consensus 233 ~hh~~~r~r~~~~~---~~~-----------~~~~rfsP~~~d~m~~l~~~~l---p~~~~~g~ciFvYNL--spd~d-- 291 (360)
T KOG0145|consen 233 MHHQAQRFRLDNLL---NPH-----------AAQARFSPMTIDGMSGLAGVNL---PGGPGGGWCIFVYNL--SPDAD-- 291 (360)
T ss_pred ccchhhhhcccccc---chh-----------hhhccCCCccccccceeeeecc---CCCCCCeeEEEEEec--CCCch--
Confidence 00000000000000 000 00011111111111 0111111 112334779999999 33333
Q ss_pred hhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 570 EFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 570 ~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
+.-|+++|++||.|..|+|+++ -+||+||.+.+-++|..||..|||+.++++.|.|+|-+-
T Consensus 292 ------e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 292 ------ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred ------HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 5889999999999999999775 579999999999999999999999999999999999653
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.5e-36 Score=328.82 Aligned_cols=340 Identities=16% Similarity=0.113 Sum_probs=221.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH---hcCCccCCceEEEcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA---LSGQPLLGQPVMVKP 331 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~---~~g~~~~g~~i~v~~ 331 (647)
++++|||+|||+.+|+++|.++|++||.|.+|.|+. ++|||||+|.+.++|..||+ +++..|.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 468999999999999999999999999999999984 46899999999999999996 478999999999998
Q ss_pred CcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCH
Q 006398 332 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 411 (647)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~ 411 (647)
+........... ............|+|.||++.+++++|+++|++||.|..|.|+.+. .+++|||+|.+.
T Consensus 75 s~~~~~~~~~~~-------~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~ 144 (481)
T TIGR01649 75 STSQEIKRDGNS-------DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESV 144 (481)
T ss_pred cCCcccccCCCC-------cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCH
Confidence 864321111100 0000111234579999999999999999999999999999887652 246899999999
Q ss_pred HHHHHHHHHcCCceecC--eEEEEEEeecCCCCCCCCCCCCCCCCCCCCC-CccCChHHHHHHHHHhccCC---CCcccC
Q 006398 412 EDARNALNLNGQLEIVG--RAIKVSAVTDQSGLQDLGANTTGDFDDDEGG-GLSLNARSRALLMQKLDRSG---SATTIA 485 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~ 485 (647)
++|.+|++.|||..|.| +.|.|.|+.........+....+++-..... ............ .+.... ...+..
T Consensus 145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 222 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQ--RQPALLGQHPSSYGH 222 (481)
T ss_pred HHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccc--cccccccCCCccCCC
Confidence 99999999999999965 5899999887654333333232222221110 000000000000 000000 000000
Q ss_pred CCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCC-
Q 006398 486 GSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPK- 564 (647)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~- 564 (647)
.+++... +...+....+ .+.+..+.+.... +.....+. +...........+++.+|||+|| +.
T Consensus 223 ~g~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~nL--~~~ 286 (481)
T TIGR01649 223 DGYSSHG----GPLAPLAGGD----RMGPPHGPPSRYR----PAYEAAPL--APAISSYGPAGGGPGSVLMVSGL--HQE 286 (481)
T ss_pred cccccCC----CCCCcccccc----cCCCcccCCCCCc----cccccccc--CccccccCCCCCCCCCEEEEeCC--CCC
Confidence 1111110 0000000000 0000000000000 00000000 00000001122467889999999 64
Q ss_pred CCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 565 NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 565 ~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
.++ +++|+++|+.||.|..|+|+.+.+|+|||+|.++++|..|+..|||..|.|++|+|.|+..
T Consensus 287 ~vt--------~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 287 KVN--------CDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCC--------HHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 355 6999999999999999999988899999999999999999999999999999999999744
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-35 Score=317.73 Aligned_cols=242 Identities=23% Similarity=0.352 Sum_probs=203.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccC-CceEEEccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL-GQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~-g~~i~v~~~ 332 (647)
..++|||+|||+++++++|.++|++||.|.+|.|++| .+|.++|||||+|.+.++|+.||+ ||+..|. |+.|.|..+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 789999999999999999999997 9998885 677766432
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCc-EEEEEec-cC-CCCCcceEEEEEeC
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLP-LD-ETGHCKGFGFVQFA 409 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~-~~-~~g~~~g~afVef~ 409 (647)
...++|||+|||+.+++++|.++|.+++. +..+.+. .. ..+.++|||||+|.
T Consensus 136 -------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~ 190 (578)
T TIGR01648 136 -------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYE 190 (578)
T ss_pred -------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcC
Confidence 12578999999999999999999999863 4444333 32 35667999999999
Q ss_pred CHHHHHHHHHHcC--CceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCC
Q 006398 410 RLEDARNALNLNG--QLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGS 487 (647)
Q Consensus 410 ~~~~A~~Al~~l~--g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (647)
+.++|..|+..|+ .+.+.|+.|.|.|+........
T Consensus 191 s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~------------------------------------------- 227 (578)
T TIGR01648 191 SHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE------------------------------------------- 227 (578)
T ss_pred CHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------------------------------------
Confidence 9999999998664 3578899999999765431000
Q ss_pred CCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCC
Q 006398 488 AVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNET 567 (647)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~ 567 (647)
......++|||+|| +..++
T Consensus 228 -----------------------------------------------------------~~~~~~k~LfVgNL--~~~~t 246 (578)
T TIGR01648 228 -----------------------------------------------------------DVMAKVKILYVRNL--MTTTT 246 (578)
T ss_pred -----------------------------------------------------------cccccccEEEEeCC--CCCCC
Confidence 00012358999999 77777
Q ss_pred chhhhhhHHHHHHHHhhhc--CCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 568 YEEFDMDIKEDVEGECSKF--GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 568 d~~~~~~~~~dl~~~F~~f--G~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
+++|.++|+.| |.|+.|.++ ++||||+|.+.++|.+|++.|||..|.|+.|.|+|+.+.
T Consensus 247 --------ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 247 --------EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred --------HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 79999999999 999999885 479999999999999999999999999999999999774
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-36 Score=294.08 Aligned_cols=251 Identities=22% Similarity=0.322 Sum_probs=217.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCcc-CCceEEEcc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPL-LGQPVMVKP 331 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~-~g~~i~v~~ 331 (647)
...+.||||.||.++.|++|..+|++.|+|-+++||+|+.+|.++|||||+|.+.++|+.|+. ||+..| .|+.|.|-.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999997 999888 578888854
Q ss_pred CcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCC--CCCcceEEEEEe
Q 006398 332 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDE--TGHCKGFGFVQF 408 (647)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~--~g~~~g~afVef 408 (647)
+ ...++|||+|||...++++|.+.|.+.+ .|..|.|+..+ ..+++|||||+|
T Consensus 161 S-------------------------van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveY 215 (506)
T KOG0117|consen 161 S-------------------------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEY 215 (506)
T ss_pred e-------------------------eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEe
Confidence 3 3368999999999999999999999987 46677676663 667899999999
Q ss_pred CCHHHHHHHHH-HcCC-ceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCC
Q 006398 409 ARLEDARNALN-LNGQ-LEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAG 486 (647)
Q Consensus 409 ~~~~~A~~Al~-~l~g-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (647)
.+...|..|-. ++++ +.+.|..|.|.||.+....... .|
T Consensus 216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded-------------------------~m-------------- 256 (506)
T KOG0117|consen 216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDED-------------------------TM-------------- 256 (506)
T ss_pred ecchhHHHHHhhccCCceeecCCcceeeccCcccCCChh-------------------------hh--------------
Confidence 99999999876 3444 6889999999999887642110 00
Q ss_pred CCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCC
Q 006398 487 SAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE 566 (647)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~ 566 (647)
..-++|||+|| +.++
T Consensus 257 ---------------------------------------------------------------s~VKvLYVRNL--~~~t 271 (506)
T KOG0117|consen 257 ---------------------------------------------------------------SKVKVLYVRNL--MEST 271 (506)
T ss_pred ---------------------------------------------------------------hheeeeeeecc--chhh
Confidence 02238999999 7777
Q ss_pred CchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccCC
Q 006398 567 TYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 644 (647)
Q Consensus 567 ~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~~ 644 (647)
| ++.|..+|+.||.|..|+.++ -+|||.|.+-++|.+|++.|||+.|.|..|.|++|-|.+-.++++
T Consensus 272 T--------eE~lk~~F~~~G~veRVkk~r---DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 272 T--------EETLKKLFNEFGKVERVKKPR---DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred h--------HHHHHHHHHhccceEEeeccc---ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 6 799999999999999998865 499999999999999999999999999999999999998887775
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.8e-35 Score=329.08 Aligned_cols=252 Identities=24% Similarity=0.413 Sum_probs=218.5
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcchh
Q 006398 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEK 336 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~~ 336 (647)
+|||||||+++|+++|.++|.+||.|.+|.|+++..|+.++|||||+|.+.++|.+||+ +++..|.|++|.|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999996 99999999999998864322
Q ss_pred hhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHH
Q 006398 337 NLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 416 (647)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~ 416 (647)
... .....+|||.|||..+++++|+++|+.||.|..|.|+.+.+|.++|||||+|.+.++|..
T Consensus 82 ~~~-----------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 82 SLR-----------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKA 144 (562)
T ss_pred ccc-----------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHH
Confidence 111 112457999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCC
Q 006398 417 ALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNST 496 (647)
Q Consensus 417 Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (647)
|++.|+|..+.|+.|.|.......... .
T Consensus 145 Ai~~lng~~~~~~~i~v~~~~~~~~~~-----------------------------------~----------------- 172 (562)
T TIGR01628 145 AIQKVNGMLLNDKEVYVGRFIKKHERE-----------------------------------A----------------- 172 (562)
T ss_pred HHHHhcccEecCceEEEeccccccccc-----------------------------------c-----------------
Confidence 999999999999999987644332100 0
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHH
Q 006398 497 ALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIK 576 (647)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~ 576 (647)
......++|||+|| |.+++ +
T Consensus 173 --------------------------------------------------~~~~~~~~l~V~nl--~~~~t--------e 192 (562)
T TIGR01628 173 --------------------------------------------------APLKKFTNLYVKNL--DPSVN--------E 192 (562)
T ss_pred --------------------------------------------------ccccCCCeEEEeCC--CCcCC--------H
Confidence 00112347999999 77777 6
Q ss_pred HHHHHHhhhcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeC----CeEEEEEEeCchh
Q 006398 577 EDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFA----GKMITATFMVPQT 638 (647)
Q Consensus 577 ~dl~~~F~~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~----gr~i~v~~~~~~~ 638 (647)
++|.++|+.||.|..|.|+.. ++|+|||+|.+.++|.+|+..|||..|. |+.|.|.++....
T Consensus 193 e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 193 DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 999999999999999998654 5789999999999999999999999999 9999999875543
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=287.13 Aligned_cols=173 Identities=30% Similarity=0.491 Sum_probs=153.3
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcC-CccCC--ce
Q 006398 251 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSG-QPLLG--QP 326 (647)
Q Consensus 251 ~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g-~~~~g--~~ 326 (647)
..+...-++|||.||..++|.+|+.+|++||.|..|.|++|+.|+.++|||||.|.+.++|.+|+. |+. ..|.| .+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 344556789999999999999999999999999999999999999999999999999999999995 655 45555 78
Q ss_pred EEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEE
Q 006398 327 VMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFV 406 (647)
Q Consensus 327 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV 406 (647)
|.|++++.+.... ....+|||+-|+..++|.+|.++|.+||.|++|.|.+++.+.++|+|||
T Consensus 109 vqvk~Ad~E~er~------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV 170 (510)
T KOG0144|consen 109 VQVKYADGERERI------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFV 170 (510)
T ss_pred eeecccchhhhcc------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEE
Confidence 9999987665532 2257899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHcCCc-eec--CeEEEEEEeecCCC
Q 006398 407 QFARLEDARNALNLNGQL-EIV--GRAIKVSAVTDQSG 441 (647)
Q Consensus 407 ef~~~~~A~~Al~~l~g~-~~~--g~~i~v~~~~~~~~ 441 (647)
.|.+.+.|..||+.|||. .+. ..+|.|.|+..+.+
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 999999999999999985 344 46999999988765
No 12
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=282.12 Aligned_cols=362 Identities=22% Similarity=0.386 Sum_probs=242.8
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc-
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA- 334 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~- 334 (647)
++||||.|.+.+.|+.|+..|.+||+|++|.+-+|+.|++.+|||||+|.-+|.|+.|++ |||..++|+.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 789999999999999999999999999999999999999999999999999999999997 999999999999963211
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCC-CcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETG-HCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g-~~~g~afVef~~~~~ 413 (647)
++...... ..........+|||..+.++++++||+.+|+.||.|..|.+-+.+++ ..+||+|++|.+...
T Consensus 194 pQAQpiID---------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 194 PQAQPIID---------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred cccchHHH---------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 11000000 00011234689999999999999999999999999999999999644 569999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCCh-HHHHHHHHHhccC----CCC-ccc--C
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNA-RSRALLMQKLDRS----GSA-TTI--A 485 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~-~~~--~ 485 (647)
...|+..||-+.++|.-|+|..+....... +.+...++++..+ ...+.+..++... +++ .+. +
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~vTPP~aL---------l~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~ 335 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKCVTPPDAL---------LQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGA 335 (544)
T ss_pred hHHHhhhcchhhcccceEecccccCCCchh---------cCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCC
Confidence 999999999999999999999876543211 2233334444322 2222222222211 111 010 1
Q ss_pred CCCCCCcccCCCCCC--CC----cccccccccccccCCCCCC---CCCCCCCCCCCcc--------------ccCCCCCc
Q 006398 486 GSAVTPAVNSTALPL--PT----APLLGAASAVSTLVPPLVQ---GTVPTHPGQLGTA--------------LQVPTASV 542 (647)
Q Consensus 486 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------~~~~~~~~ 542 (647)
....+|........+ +. ....|......++.|+.+. ..+.-.|.+..++ ...+....
T Consensus 336 ~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~ 415 (544)
T KOG0124|consen 336 PGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLER 415 (544)
T ss_pred ccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccC
Confidence 111111111111111 00 0011111111111111111 0000000000000 00011111
Q ss_pred Ccc-------C---C-----------CCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCC--
Q 006398 543 PIF-------D---T-----------IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSA-- 599 (647)
Q Consensus 543 ~~~-------~---~-----------~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~-- 599 (647)
+.. . . -...+++|++.||+.|.. ..++|+.+|.++|++||.|..|.|.....
T Consensus 416 ~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~D-----iDe~LegEi~EECgKfG~V~rViI~nekq~e 490 (544)
T KOG0124|consen 416 PEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKD-----IDEDLEGEITEECGKFGAVNRVIIYNEKQGE 490 (544)
T ss_pred HHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhh-----hhhHHHHHHHHHHhcccceeEEEEEeccccc
Confidence 100 0 0 136789999999988854 44677899999999999999998844322
Q ss_pred -------ccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhc
Q 006398 600 -------GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 641 (647)
Q Consensus 600 -------G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~ 641 (647)
-..||+|....++.+|+++|+|+.|+|++|..+.++...|.+
T Consensus 491 ~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~~FD~ 539 (544)
T KOG0124|consen 491 EEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQERFDN 539 (544)
T ss_pred ccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhhcccc
Confidence 246999999999999999999999999999999998887765
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-34 Score=321.66 Aligned_cols=268 Identities=25% Similarity=0.386 Sum_probs=221.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
..+|||+|||.++++++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|..|++ ++|..+.|+.|.|.....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 4589999999999999999999999999999999886 58899999999999999999996 999999999999965543
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 414 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A 414 (647)
..... .......++|||.|||..+++++|+++|..||.|..+.+..+.+|.++|||||+|.+.++|
T Consensus 167 ~~~~~--------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 167 KHERE--------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred ccccc--------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 32221 0112345789999999999999999999999999999999988888999999999999999
Q ss_pred HHHHHHcCCceec----CeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCC
Q 006398 415 RNALNLNGQLEIV----GRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 490 (647)
Q Consensus 415 ~~Al~~l~g~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (647)
.+|++.|+|..|. |..|.|.++..+.... ..+...+.....
T Consensus 233 ~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~-------------------------~~~~~~~~~~~~---------- 277 (562)
T TIGR01628 233 AKAVEEMNGKKIGLAKEGKKLYVGRAQKRAERE-------------------------AELRRKFEELQQ---------- 277 (562)
T ss_pred HHHHHHhCCcEecccccceeeEeecccChhhhH-------------------------HHHHhhHHhhhh----------
Confidence 9999999999999 9999998876543210 111111110000
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchh
Q 006398 491 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEE 570 (647)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~ 570 (647)
.........+|||+|| +..++
T Consensus 278 ------------------------------------------------------~~~~~~~~~~l~V~nl--~~~~~--- 298 (562)
T TIGR01628 278 ------------------------------------------------------ERKMKAQGVNLYVKNL--DDTVT--- 298 (562)
T ss_pred ------------------------------------------------------hhhcccCCCEEEEeCC--CCccC---
Confidence 0000113457999999 76766
Q ss_pred hhhhHHHHHHHHhhhcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 571 FDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 571 ~~~~~~~dl~~~F~~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
.++|.++|+.||.|+.|+|+.+ ++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+...
T Consensus 299 -----~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 299 -----DEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred -----HHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 6999999999999999999654 5799999999999999999999999999999999998864
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=280.54 Aligned_cols=349 Identities=21% Similarity=0.304 Sum_probs=232.3
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
.||||++||+.++.++|.++|+.+|+|..+.++.++.++..+|||||+|.-.++++.|++ +++..+.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 699999999999999999999999999999999999999999999999999999999997 8999999999999887644
Q ss_pred hhhcccc---cccCCCCCC----CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEe
Q 006398 336 KNLVQSN---SSIAGASGG----GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 408 (647)
Q Consensus 336 ~~~~~~~---~~~~~~~~~----~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef 408 (647)
....... ..+..-+-. .-.....+...|+|+||||.+...+|+.+|+.||.|..|.|+....|.-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 3322110 000000000 011123347899999999999999999999999999999999887666669999999
Q ss_pred CCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChH-HHHHHHHHhccCCC-CcccCC
Q 006398 409 ARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNAR-SRALLMQKLDRSGS-ATTIAG 486 (647)
Q Consensus 409 ~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~ 486 (647)
....+|..||+.+|+..|+|++|-|.||.++.......... ...+... .....+......+. ....-+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~----------~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~ 235 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEE----------KQSLKKAVKEEEDKEADEDDGKDFDEEDG 235 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhh----------hhhhhhccchhhhcccccccccccchhcc
Confidence 99999999999999999999999999999887543322100 0000000 00000000000000 000000
Q ss_pred CCCCCcccCCCCCCCCccccc---ccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCC
Q 006398 487 SAVTPAVNSTALPLPTAPLLG---AASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDP 563 (647)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p 563 (647)
....-.- .....+....- ........+-..+ . .......+............-..+|||.|| |
T Consensus 236 e~d~ede---Ee~D~~se~~ee~~~~Eee~~~vDd~e-~--------S~~~~~~k~~q~k~~~en~~~~~tVFvRNL--~ 301 (678)
T KOG0127|consen 236 EEDSEDE---EETDGNSEAFEEGEESEEEEDDVDDEE-S--------SGKKESDKKAQNKTTRENITEGKTVFVRNL--P 301 (678)
T ss_pred ccccccc---ccccccchhhhcccccccccccccccc-c--------cccCcccchhccccccccccccceEEEecC--C
Confidence 0000000 00000000000 0000000000000 0 000000000110111222345689999999 9
Q ss_pred CCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHH-----cC-ceeCCeEEEEE
Q 006398 564 KNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRAL-----HG-RWFAGKMITAT 632 (647)
Q Consensus 564 ~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~l-----nG-~~~~gr~i~v~ 632 (647)
+.+| ++.|.++|++||.|.++.|+.. ++|+|||.|.++.+|+.||... .| ..|.|+.|.|.
T Consensus 302 fD~t--------EEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~ 373 (678)
T KOG0127|consen 302 FDTT--------EEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVT 373 (678)
T ss_pred cccc--------HHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeee
Confidence 8888 8999999999999999888543 7899999999999999999987 24 88999999999
Q ss_pred EeCch
Q 006398 633 FMVPQ 637 (647)
Q Consensus 633 ~~~~~ 637 (647)
.|-..
T Consensus 374 ~Av~R 378 (678)
T KOG0127|consen 374 LAVTR 378 (678)
T ss_pred eccch
Confidence 97654
No 15
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.7e-34 Score=294.87 Aligned_cols=304 Identities=24% Similarity=0.423 Sum_probs=239.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhc-----------C-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcC
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRA-----------G-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSG 319 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~-----------G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g 319 (647)
.+.+.+.+||+++|+.++++.+..+|..- | .|..+.+. ..+.||||+|.+.++|..|+.+++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccccceeEEecCCCchhhhhcccc
Confidence 45577899999999999999999998663 2 46666664 455699999999999999999999
Q ss_pred CccCCceEEEccCcchhhhccccccc----CCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC
Q 006398 320 QPLLGQPVMVKPSEAEKNLVQSNSSI----AGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 395 (647)
Q Consensus 320 ~~~~g~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~ 395 (647)
..+.|.++++................ .................++|++||..+++.++.+++..||.+....++.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 99999999885333222211111111 11122222333445678999999999999999999999999999999988
Q ss_pred -CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHH
Q 006398 396 -ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQK 474 (647)
Q Consensus 396 -~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (647)
.+|.++||||.+|.+...+..|++.|||+.+++..|.|..+...........+ +.
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~--------------~~---------- 380 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN--------------IS---------- 380 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC--------------cc----------
Confidence 67899999999999999999999999999999999999997765432111110 00
Q ss_pred hccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcce
Q 006398 475 LDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSEC 554 (647)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (647)
++ +.+.......+..+.++.+
T Consensus 381 --------------------~~---------------------------------------~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 381 --------------------QS---------------------------------------QVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred --------------------cc---------------------------------------ccccchhhhcccCCCcchh
Confidence 00 0000001111233668889
Q ss_pred EEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC--------CCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 555 LLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--------SAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 555 l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~--------~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
|++.|+++|.++.|+++|++|.+||...|++||.|..|.|+++ +.|.+||+|++.+++++|++.|+|++|.|
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n 481 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN 481 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC
Confidence 9999999999999999999999999999999999999999665 57899999999999999999999999999
Q ss_pred eEEEEEEeCchhhhccCC
Q 006398 627 KMITATFMVPQTYEAKFP 644 (647)
Q Consensus 627 r~i~v~~~~~~~~~~~~~ 644 (647)
++|.++|++++.|++...
T Consensus 482 RtVvtsYydeDkY~~r~~ 499 (500)
T KOG0120|consen 482 RTVVASYYDEDKYHAREF 499 (500)
T ss_pred cEEEEEecCHHHhhcccc
Confidence 999999999999988653
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.7e-32 Score=295.57 Aligned_cols=292 Identities=21% Similarity=0.251 Sum_probs=209.1
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC--ceEEEccCc
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVKPSE 333 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g--~~i~v~~~~ 333 (647)
.+|||+||++.+|+++|.++|+.||.|..|.|+.+.. .|+|||+|.+.++|.+|++ |||..|.| ..|+|.++.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 4799999999999999999999999999999987543 4799999999999999997 99999965 467776654
Q ss_pred chhhhc-----------cc-----------------cccc------------CCCC----------C--C----------
Q 006398 334 AEKNLV-----------QS-----------------NSSI------------AGAS----------G--G---------- 351 (647)
Q Consensus 334 ~~~~~~-----------~~-----------------~~~~------------~~~~----------~--~---------- 351 (647)
...-.. .+ .... .+.. . +
T Consensus 173 ~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
T TIGR01649 173 PTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYR 252 (481)
T ss_pred CCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCc
Confidence 321000 00 0000 0000 0 0
Q ss_pred ------C--------CCCCCCCCcEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHH
Q 006398 352 ------G--------TGPYSGGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARN 416 (647)
Q Consensus 352 ------~--------~~~~~~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~ 416 (647)
. ......++.+|||+||++ .+++++|.++|+.||.|..|.|+.+ .+|+|||+|.+.++|..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~ 328 (481)
T TIGR01649 253 PAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQL 328 (481)
T ss_pred ccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHH
Confidence 0 000123567999999998 6999999999999999999999876 36899999999999999
Q ss_pred HHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCC
Q 006398 417 ALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNST 496 (647)
Q Consensus 417 Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (647)
||..|||..|.|+.|.|.++........... ..+ . + ... +.. +.... ..
T Consensus 329 Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~----~~~--~-~-~~~-----------~~d----------~~~~~--~~ 377 (481)
T TIGR01649 329 ALTHLNGVKLFGKPLRVCPSKQQNVQPPREG----QLD--D-G-LTS-----------YKD----------YSSSR--NH 377 (481)
T ss_pred HHHHhCCCEECCceEEEEEcccccccCCCCC----cCc--C-C-Ccc-----------ccc----------ccCCc--cc
Confidence 9999999999999999999765432110000 000 0 0 000 000 00000 00
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHH
Q 006398 497 ALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIK 576 (647)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~ 576 (647)
.+. .+ .........+++.+|||+|| |..++ +
T Consensus 378 r~~-------------------------------------~~--~~~~~~~~~~ps~~L~v~NL--p~~~t--------e 408 (481)
T TIGR01649 378 RFK-------------------------------------KP--GSANKNNIQPPSATLHLSNI--PLSVS--------E 408 (481)
T ss_pred cCC-------------------------------------Cc--ccccccccCCCCcEEEEecC--CCCCC--------H
Confidence 000 00 00001112457889999999 77777 6
Q ss_pred HHHHHHhhhcCC--eEEEEEeeC---CCccEEEEeCChHHHHHHHHHHcCceeCCeE------EEEEEeCc
Q 006398 577 EDVEGECSKFGK--LKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAGKM------ITATFMVP 636 (647)
Q Consensus 577 ~dl~~~F~~fG~--V~~v~i~~~---~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~------i~v~~~~~ 636 (647)
++|+++|+.||. |..|++... .+|+|||+|.+.++|..|+..|||+.|.|+. |+|+|+.+
T Consensus 409 e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 409 EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 999999999998 888888543 3699999999999999999999999999984 99999865
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-32 Score=251.16 Aligned_cols=230 Identities=24% Similarity=0.420 Sum_probs=187.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
..++||||||...+||+-|..+|.+.|.|.+++||.+ .|+|.++..
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccccC
Confidence 4589999999999999999999999999999999965 234444432
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~ 413 (647)
+.. ...+.....--|||+.|...++.++|++.|.+||.|..++|+++ .+++++||+||-|.+.++
T Consensus 51 p~n--------------Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~d 116 (321)
T KOG0148|consen 51 PGN--------------QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKED 116 (321)
T ss_pred ccc--------------CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHH
Confidence 211 11112222556999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcc
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAV 493 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (647)
|+.||+.|||.+|+++.|+..|+.-+.... ++.++...
T Consensus 117 AEnAI~~MnGqWlG~R~IRTNWATRKp~e~---------------n~~~ltfd--------------------------- 154 (321)
T KOG0148|consen 117 AENAIQQMNGQWLGRRTIRTNWATRKPSEM---------------NGKPLTFD--------------------------- 154 (321)
T ss_pred HHHHHHHhCCeeeccceeeccccccCcccc---------------CCCCccHH---------------------------
Confidence 999999999999999999999998875210 00001000
Q ss_pred cCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhh
Q 006398 494 NSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDM 573 (647)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~ 573 (647)
..+....+..++|||+|| +..++
T Consensus 155 -------------------------------------------------eV~NQssp~NtsVY~G~I--~~~lt------ 177 (321)
T KOG0148|consen 155 -------------------------------------------------EVYNQSSPDNTSVYVGNI--ASGLT------ 177 (321)
T ss_pred -------------------------------------------------HHhccCCCCCceEEeCCc--Ccccc------
Confidence 001111235668999999 55677
Q ss_pred hHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 574 DIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 574 ~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
+++|++.|+.||.|..|+|-+ .+|+|||.|.+.|.|.+||..|||..++|+.|+|.|=
T Consensus 178 --e~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 178 --EDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred --HHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 699999999999999999955 6799999999999999999999999999999999994
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.2e-30 Score=265.85 Aligned_cols=340 Identities=21% Similarity=0.265 Sum_probs=231.2
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
..|||| +++|+.+|.++|+++|+|+.|++++|. | +-|||||.|.++.+|.+||. +|...|.|++|.|.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999999 7 99999999999999999997 9999999999999887543
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHH
Q 006398 336 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDAR 415 (647)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~ 415 (647)
+. .|||.||++.++...|.++|+.||.|..|++..+..| ++|| ||+|.+.+.|.
T Consensus 76 ~~------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~ 129 (369)
T KOG0123|consen 76 PS------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAK 129 (369)
T ss_pred Cc------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHH
Confidence 32 1999999999999999999999999999999999888 8999 99999999999
Q ss_pred HHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccC
Q 006398 416 NALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNS 495 (647)
Q Consensus 416 ~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (647)
+|+..+||..+.|+.|.|.....+.............+........+ .......+...+...+.............. .
T Consensus 130 ~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~-~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~ 207 (369)
T KOG0123|consen 130 KAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLE-EDSTDEELKDLFSAYGSITSVAVMRDSIGK-S 207 (369)
T ss_pred HHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccc-cccchHHHHHhhcccCcceEEEEeecCCCC-C
Confidence 99999999999999999999887766444333222222111111111 111122233333322221111110000000 1
Q ss_pred CCCCCCCccccc-ccccccccCCC----CCCCCCCCCCCCCCccccCCCCCcCc-cCCCCCCcceEEeccCCCCCCCCch
Q 006398 496 TALPLPTAPLLG-AASAVSTLVPP----LVQGTVPTHPGQLGTALQVPTASVPI-FDTIGVPSECLLLKNMFDPKNETYE 569 (647)
Q Consensus 496 ~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nl~~p~~~~d~ 569 (647)
.+++..+..... +..++..+... ...+.+.................... ..........|+|.|| ...++
T Consensus 208 ~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknl--d~~~~-- 283 (369)
T KOG0123|consen 208 KGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNL--DETLS-- 283 (369)
T ss_pred CCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccC--ccccc--
Confidence 111111111100 00000000000 00011111111111111111100000 1111346678999998 55555
Q ss_pred hhhhhHHHHHHHHhhhcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhh
Q 006398 570 EFDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640 (647)
Q Consensus 570 ~~~~~~~~dl~~~F~~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~ 640 (647)
.+.|..+|+.||.|..++|+.+ ++|++||+|.++++|..|+..|||..+++++|.|.++...+.-
T Consensus 284 ------~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 284 ------DEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred ------hhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 5999999999999999988654 6899999999999999999999999999999999998755543
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.1e-27 Score=264.39 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=135.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccC------------CcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPF------------GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL 424 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~------------G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~ 424 (647)
....++|||+|||+.+++++|.++|..+ +.|..+.+.. .+|||||+|.+.++|..||+ |+|+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~-----~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK-----EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC-----CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 3457899999999999999999999864 3455555544 38999999999999999995 9999
Q ss_pred eecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcc
Q 006398 425 EIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAP 504 (647)
Q Consensus 425 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (647)
.|.|+.|.|................ . . ..+ ..+..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~-------~---------------------~---------~~~--------~~~~~ 280 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEV-------S---------------------Q---------KNP--------DDNAK 280 (509)
T ss_pred EeeCceeEecCccccCCccccCCCC-------C---------------------C---------CCC--------ccccc
Confidence 9999999997655433110000000 0 0 000 00000
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhh
Q 006398 505 LLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS 584 (647)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~ 584 (647)
..+ .+ ...........+|||+|| |..++ +++|.++|.
T Consensus 281 ~~~-----------------------------~~----~~~~~~~~~~~~l~v~nl--p~~~~--------~~~l~~~f~ 317 (509)
T TIGR01642 281 NVE-----------------------------KL----VNSTTVLDSKDRIYIGNL--PLYLG--------EDQIKELLE 317 (509)
T ss_pred ccc-----------------------------cc----cccccCCCCCCEEEEeCC--CCCCC--------HHHHHHHHH
Confidence 000 00 000001224568999999 77777 799999999
Q ss_pred hcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 585 KFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 585 ~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
.||.|..|.|+.. ++|||||+|.++++|..|+..|||..|+|+.|.|.++..
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 9999999988654 689999999999999999999999999999999999854
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=4.4e-28 Score=247.81 Aligned_cols=168 Identities=23% Similarity=0.381 Sum_probs=152.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
...++|||+|||+++|+++|+++|..||.|+.|.|+.+..|+.++|||||+|.+.++|..||+ |++..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 356899999999999999999999999999999999999999999999999999999999996 9999999999999887
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCH
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARL 411 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~ 411 (647)
.+... .....+|||.|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.
T Consensus 185 ~p~~~-------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 185 RPGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccc-------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 53221 122467999999999999999999999999999999988 4899999999999999
Q ss_pred HHHHHHHHHcCCceecC--eEEEEEEeecCC
Q 006398 412 EDARNALNLNGQLEIVG--RAIKVSAVTDQS 440 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g--~~i~v~~~~~~~ 440 (647)
++|.+||+.|++..|.+ +.|.|.++....
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999998876 689999987654
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.8e-27 Score=217.70 Aligned_cols=179 Identities=27% Similarity=0.398 Sum_probs=156.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
...-||||-|.+.|+.+.|++.|.+||.|.+++|++|.+|+++|||+||-|.+.++|+.||+ |||+-|+++.|.-.++.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35679999999999999999999999999999999999999999999999999999999997 99999999999999988
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLED 413 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~ 413 (647)
.++........ .-...-.......++||++||+..+++++|++.|.+||.|..|.+.++ +||+||.|.+.|.
T Consensus 141 RKp~e~n~~~l---tfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 141 RKPSEMNGKPL---TFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEA 212 (321)
T ss_pred cCccccCCCCc---cHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhh
Confidence 76632211110 000111223455789999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
|..||..+|+..|.|+.|++.|.+....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999999776553
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.4e-26 Score=251.94 Aligned_cols=181 Identities=20% Similarity=0.335 Sum_probs=144.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
..+|||+|||+.+|+++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|..||+ |+|..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999997 999999999999988542
Q ss_pred hhhhccccc------------------------------c------cCCCCC----------------------------
Q 006398 335 EKNLVQSNS------------------------------S------IAGASG---------------------------- 350 (647)
Q Consensus 335 ~~~~~~~~~------------------------------~------~~~~~~---------------------------- 350 (647)
......... . ......
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 111000000 0 000000
Q ss_pred -------CCCCCCCCCCcEEEEcCCCCCCC----------HHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHH
Q 006398 351 -------GGTGPYSGGARRLYVGNLHFNMT----------EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLED 413 (647)
Q Consensus 351 -------~~~~~~~~~~~~l~v~nLp~~~~----------e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~ 413 (647)
.........+.+|+|.||....+ .++|++.|.+||.|..|.|... ...|++||+|.+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~ 422 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDA 422 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHH
Confidence 00000224578999999955433 3689999999999999988743 347899999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecC
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
|.+|++.|||..|+|+.|.|.|....
T Consensus 423 A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 423 ALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99999999999999999999997664
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=1.4e-27 Score=242.13 Aligned_cols=261 Identities=18% Similarity=0.210 Sum_probs=183.8
Q ss_pred hhcccccccc--ccccccchHHHhhhhccchHHHHhhhhhhhhhHHhhhhhhcccccccccchhhhhccCCccccccCCC
Q 006398 171 RERSRDREVI--ERERSRDREVIERERSRDREVIERERSRDRELKEREKERESRDNDKESRDNVMAICRRPKEKKEQVEP 248 (647)
Q Consensus 171 r~r~r~~~~~--~r~~~r~~~~~~~~~~r~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (647)
+.+.|+.+.+ ..+..++...+.+..+++.++..|....+- ..........++.....+..++.....++....
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~-----~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~ 264 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDE-----QSVPLAIALSGQRLLGVPVIVQLSEAEKNRAAN 264 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecc-----cchhhHhhhcCCcccCceeEecccHHHHHHHHh
Confidence 4444444433 456667777788888888888888855543 344444455555555555555554433322111
Q ss_pred CC------CCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCc
Q 006398 249 EV------DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQP 321 (647)
Q Consensus 249 ~~------~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~ 321 (647)
.. ....+-..||||||++++|+++|+.+|++||.|..|.+++|..||.++|||||+|.+.++|.+|++ |||+.
T Consensus 265 ~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 265 ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred ccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce
Confidence 11 112233349999999999999999999999999999999999999999999999999999999986 99999
Q ss_pred cCCceEEEccCcchhhhcc--------------cc--------------cccCC--------------------------
Q 006398 322 LLGQPVMVKPSEAEKNLVQ--------------SN--------------SSIAG-------------------------- 347 (647)
Q Consensus 322 ~~g~~i~v~~~~~~~~~~~--------------~~--------------~~~~~-------------------------- 347 (647)
|.|+.|+|..-........ .. ....+
T Consensus 345 lAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~ 424 (549)
T KOG0147|consen 345 LAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGV 424 (549)
T ss_pred ecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCC
Confidence 9999999842211000000 00 00000
Q ss_pred ------CCCCCCCCCCCCCcEEEEcCCCCCCC----------HHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCH
Q 006398 348 ------ASGGGTGPYSGGARRLYVGNLHFNMT----------EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 411 (647)
Q Consensus 348 ------~~~~~~~~~~~~~~~l~v~nLp~~~~----------e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~ 411 (647)
.+....+....++.|+.|.|+-...+ .++|.+.+.+||.|..|.+.++ +.|++||.|.+.
T Consensus 425 ~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~ 500 (549)
T KOG0147|consen 425 VRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSA 500 (549)
T ss_pred cCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcH
Confidence 00000011125678899999843322 2788889999999999999876 448999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 412 EDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
+.|..|+..|||.+|.|+.|.+.|.....
T Consensus 501 ~~A~~a~~alhgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 501 EAAGTAVKALHGRWFAGRMITAKYLPLER 529 (549)
T ss_pred HHHHHHHHHHhhhhhccceeEEEEeehhh
Confidence 99999999999999999999999976543
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1e-25 Score=230.47 Aligned_cols=166 Identities=22% Similarity=0.379 Sum_probs=145.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.....++|||.|||+.+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|..||+.|++..|.++.|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3445789999999999999999999999999999999988 588999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccc
Q 006398 435 AVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVST 514 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (647)
|+.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 8643210
Q ss_pred cCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEE
Q 006398 515 LVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV 594 (647)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i 594 (647)
.....+|||.|| |..++ +++|.++|++||.|+.|.|
T Consensus 190 ----------------------------------~~~~~~lfV~nL--p~~vt--------ee~L~~~F~~fG~V~~v~i 225 (346)
T TIGR01659 190 ----------------------------------SIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGQIVQKNI 225 (346)
T ss_pred ----------------------------------ccccceeEEeCC--CCccc--------HHHHHHHHHhcCCEEEEEE
Confidence 001237999999 77777 7999999999999999998
Q ss_pred eeC-----CCccEEEEeCChHHHHHHHHHHcCceeCC--eEEEEEEeCchh
Q 006398 595 EKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAG--KMITATFMVPQT 638 (647)
Q Consensus 595 ~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~g--r~i~v~~~~~~~ 638 (647)
+.+ ++|+|||+|.+.++|+.||+.|||..|.| ++|.|.|+.+..
T Consensus 226 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 226 LRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 654 46999999999999999999999999865 799999988653
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=6.1e-25 Score=231.04 Aligned_cols=185 Identities=26% Similarity=0.421 Sum_probs=151.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC--ceEEEccC
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVKPS 332 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g--~~i~v~~~ 332 (647)
..+|||+|||..+++++|..+|..||.|..+.++.+..++.++|||||+|.+.++|..||+ |||..+.| .+|.|.++
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4689999999999999999999999999999999999889999999999999999999996 99999887 56777766
Q ss_pred cchhhhcc----c------ccccC----------------------------------------------------CC--
Q 006398 333 EAEKNLVQ----S------NSSIA----------------------------------------------------GA-- 348 (647)
Q Consensus 333 ~~~~~~~~----~------~~~~~----------------------------------------------------~~-- 348 (647)
........ . ..... ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 43221000 0 00000 00
Q ss_pred ---------CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHH
Q 006398 349 ---------SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNAL 418 (647)
Q Consensus 349 ---------~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al 418 (647)
.+.........+.+|||+|||+.+++++|.++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 000000011224479999999999999999999999999999999995 9999999999999999999999
Q ss_pred HHcCCceecCeEEEEEEeecCC
Q 006398 419 NLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 419 ~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
..|||..|+|+.|.|.|+..+.
T Consensus 329 ~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 329 LSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999987764
No 26
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=2.1e-23 Score=204.45 Aligned_cols=182 Identities=23% Similarity=0.385 Sum_probs=144.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHH-HhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFF-SRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f-~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
..-.+.+||.|||+++.+++|+++| ++.|.|..|.+..|.. |+.+|+|.|+|+++|.+++|++ ||...+.|++|+|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3344679999999999999999999 6789999999999976 8999999999999999999998 99999999999997
Q ss_pred cCcchhhhccccc---------------------ccCCCCC---------------------------------------
Q 006398 331 PSEAEKNLVQSNS---------------------SIAGASG--------------------------------------- 350 (647)
Q Consensus 331 ~~~~~~~~~~~~~---------------------~~~~~~~--------------------------------------- 350 (647)
.....+..+.... .-.+...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 5442211100000 0000000
Q ss_pred ------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Q 006398 351 ------GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL 424 (647)
Q Consensus 351 ------~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~ 424 (647)
.......+...++||.||.+.+....|++.|.-.|.|+.|.+-.++.|.++|+|.++|.++-.|..||.+|++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00011234467899999999999999999999999999999988888899999999999999999999999976
Q ss_pred eecCeEEEEEE
Q 006398 425 EIVGRAIKVSA 435 (647)
Q Consensus 425 ~~~g~~i~v~~ 435 (647)
-+..+...+..
T Consensus 280 g~~~~~~~~Rl 290 (608)
T KOG4212|consen 280 GLFDRRMTVRL 290 (608)
T ss_pred CCccccceeec
Confidence 66666665555
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.93 E-value=7.8e-25 Score=228.11 Aligned_cols=273 Identities=21% Similarity=0.300 Sum_probs=207.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
......|+|+|||..+..++|...|..||.|..|.|.... --|+|+|.++.+|..|.. |....+...++.+.+
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 3455789999999999999999999999999999654221 149999999999999997 888777777776655
Q ss_pred Ccchhhhccc-------ccccC-------------CCCCCCCC-----------CCCCCCcEEEEcCCCCCCCHHHHHHh
Q 006398 332 SEAEKNLVQS-------NSSIA-------------GASGGGTG-----------PYSGGARRLYVGNLHFNMTEDQLRQV 380 (647)
Q Consensus 332 ~~~~~~~~~~-------~~~~~-------------~~~~~~~~-----------~~~~~~~~l~v~nLp~~~~e~~l~~~ 380 (647)
+........+ ..... +....... ......+.|||.||++.++.++|...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 4321111000 00000 00000000 00112233999999999999999999
Q ss_pred hccCCcEEEEEeccCCCC----CcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCC
Q 006398 381 FEPFGTVELVQLPLDETG----HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDD 456 (647)
Q Consensus 381 f~~~G~v~~v~i~~~~~g----~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 456 (647)
|.++|.|..|.|.+...+ .+.|||||+|.+.++|+.|+..|+|..|+|+.|.|.++..+.. ....
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~--~~~g--------- 604 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA--STVG--------- 604 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc--cccc---------
Confidence 999999999988877433 3459999999999999999999999999999999999772210 0000
Q ss_pred CCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCcccc
Q 006398 457 EGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQ 536 (647)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (647)
T Consensus 605 -------------------------------------------------------------------------------- 604 (725)
T KOG0110|consen 605 -------------------------------------------------------------------------------- 604 (725)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHH
Q 006398 537 VPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQS 611 (647)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~ 611 (647)
+ -.......+.|+|+|| |++++ ..+|..+|..||.|..|.|++. ..|||||+|-++.+
T Consensus 605 K-------~~~~kk~~tKIlVRNi--pFeAt--------~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 605 K-------KKSKKKKGTKILVRNI--PFEAT--------KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred c-------ccccccccceeeeecc--chHHH--------HHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 0 0000112458999999 98888 8999999999999999999654 47999999999999
Q ss_pred HHHHHHHHcCceeCCeEEEEEEeCchhh
Q 006398 612 AFAAQRALHGRWFAGKMITATFMVPQTY 639 (647)
Q Consensus 612 A~~A~~~lnG~~~~gr~i~v~~~~~~~~ 639 (647)
|.+|+.+|.+..|.|+.|.++|+..+..
T Consensus 668 a~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 668 AKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999887654
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=3.8e-24 Score=229.60 Aligned_cols=174 Identities=23% Similarity=0.418 Sum_probs=144.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 3578999999999999999999999999999999988 589999999999999999999999999999999999998532
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
...... +. .
T Consensus 186 ~~p~a~------------------~~-----------~------------------------------------------ 194 (612)
T TIGR01645 186 NMPQAQ------------------PI-----------I------------------------------------------ 194 (612)
T ss_pred cccccc------------------cc-----------c------------------------------------------
Confidence 211000 00 0
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 597 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~ 597 (647)
...........+|||+|| +..++ +++|.++|+.||.|+.|.|..+
T Consensus 195 -------------------------~~~~~~~~~~~rLfVgnL--p~~vt--------eedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 195 -------------------------DMVQEEAKKFNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred -------------------------ccccccccccceEEeecC--CCCCC--------HHHHHHHHhhcCCeeEEEEEec
Confidence 000000112348999999 77776 6999999999999999999664
Q ss_pred -----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchh
Q 006398 598 -----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 638 (647)
Q Consensus 598 -----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~ 638 (647)
++|||||+|.+.++|..|+..|||..|+|+.|+|.++....
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 57999999999999999999999999999999999987543
No 29
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.92 E-value=2.7e-23 Score=202.61 Aligned_cols=319 Identities=18% Similarity=0.216 Sum_probs=208.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-h--cCCccCCceEEEc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L--SGQPLLGQPVMVK 330 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~--~g~~~~g~~i~v~ 330 (647)
.+++.|.++|||+.++|++|..++.+||.|.++.+...++ .|||+|.+.+.|...+. + -...+.|++|.|+
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678999999999999999999999999999999986554 89999999999988664 2 3356789999998
Q ss_pred cCcchhhhcccccc-------------------cCCC--CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE
Q 006398 331 PSEAEKNLVQSNSS-------------------IAGA--SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL 389 (647)
Q Consensus 331 ~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~ 389 (647)
++....-.....+. .... ...+.......--.++|.|+-+.++-+-|.++|++||.|..
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 76422211111110 0000 00011122223456788999999999999999999999988
Q ss_pred EEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC--eEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHH
Q 006398 390 VQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG--RAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARS 467 (647)
Q Consensus 390 v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (647)
|.......|. -|+|+|.+.+.|+.|..+|+|..|.. +.|+|.|++......+.....+.++-... ++.+...
T Consensus 180 IiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~---LP~gd~~ 253 (492)
T KOG1190|consen 180 IITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPD---LPVGDGQ 253 (492)
T ss_pred EEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCC---CCCCccc
Confidence 7655442221 39999999999999999999987764 56777777765555544444444432222 1111000
Q ss_pred HHHHHHHhccCCCCcccCCCCC-CCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccC
Q 006398 468 RALLMQKLDRSGSATTIAGSAV-TPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFD 546 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (647)
. .+. ..++..++ .|......+.. +.+++.+.. .. +.+.
T Consensus 254 p-----~l~-----~~~~aa~~~~~~~~g~p~ai--------p~~~~~a~~------------------a~-----~~~~ 292 (492)
T KOG1190|consen 254 P-----SLD-----QLMAAAFGSVPAVHGAPLAI--------PSGAAGANA------------------AD-----GKIE 292 (492)
T ss_pred c-----ccc-----hhhhccccccccccCCcccC--------Cccchhhcc------------------cc-----cccc
Confidence 0 000 00000000 00000000000 000000000 00 0000
Q ss_pred CCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 547 TIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 547 ~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
... .+.+|.|.|| .+.-.| .+-|+.+|+.||.|.+|+|..+.+.-|+|+|.+...|+-|+.+|+|..+.|
T Consensus 293 ~~~-~n~vllvsnl-n~~~VT--------~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~g 362 (492)
T KOG1190|consen 293 SPS-ANVVLLVSNL-NEEAVT--------PDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYG 362 (492)
T ss_pred cCC-CceEEEEecC-chhccc--------hhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecC
Confidence 000 1568999999 233333 589999999999999999999888999999999999999999999999999
Q ss_pred eEEEEEEeC
Q 006398 627 KMITATFMV 635 (647)
Q Consensus 627 r~i~v~~~~ 635 (647)
++|+|.|--
T Consensus 363 k~lrvt~SK 371 (492)
T KOG1190|consen 363 KKLRVTLSK 371 (492)
T ss_pred ceEEEeecc
Confidence 999999843
No 30
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=215.78 Aligned_cols=184 Identities=23% Similarity=0.408 Sum_probs=149.6
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
...|+|.|||+.+...+|..+|+.||.|..|.|.....++.. |||||+|....+|..||+ +|+..|.|++|-|.|+-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 579999999999999999999999999999999977775545 999999999999999998 999999999999988754
Q ss_pred hhhhccccc----------------c-cC---------------------CC---------CC--------CC--C----
Q 006398 335 EKNLVQSNS----------------S-IA---------------------GA---------SG--------GG--T---- 353 (647)
Q Consensus 335 ~~~~~~~~~----------------~-~~---------------------~~---------~~--------~~--~---- 353 (647)
...+..... . .. .. .. .. +
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 333222110 0 00 00 00 00 0
Q ss_pred ----------CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHc-
Q 006398 354 ----------GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN- 421 (647)
Q Consensus 354 ----------~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l- 421 (647)
........+|||+|||+.++++.|++.|.+||.|..+.|+.+ .++.++|.|||.|.+...|.+||.+.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000112478999999999999999999999999999999998 59999999999999999999999865
Q ss_pred ----CC-ceecCeEEEEEEeecCC
Q 006398 422 ----GQ-LEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 422 ----~g-~~~~g~~i~v~~~~~~~ 440 (647)
.| +.|.|+.|.|+.+....
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 33 88999999999987765
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.90 E-value=8.2e-24 Score=184.85 Aligned_cols=169 Identities=28% Similarity=0.451 Sum_probs=150.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+..+||||||+..++++-|.++|-+.|+|.++.|.++..+...+|||||+|.+.|+|+.|++ ||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34799999999999999999999999999999999999999999999999999999999998 99999999999998765
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE-EEeccC-CCCCcceEEEEEeCCH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLD-ETGHCKGFGFVQFARL 411 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~-~~g~~~g~afVef~~~ 411 (647)
..+.. ...+..|||+||.+.+++..|++.|+.||.|.. -.+..+ .+|.++|++||-|.+.
T Consensus 88 ~~~~n------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sf 149 (203)
T KOG0131|consen 88 AHQKN------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASF 149 (203)
T ss_pred ccccc------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhH
Confidence 21111 012367999999999999999999999998754 356666 4788999999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 412 EDARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
+.+.+|+..|+|..+++++|.|.|+..+..
T Consensus 150 easd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 150 EASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 999999999999999999999999987654
No 32
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.9e-23 Score=189.08 Aligned_cols=185 Identities=27% Similarity=0.446 Sum_probs=154.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC--ceEEEcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPVMVKP 331 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g--~~i~v~~ 331 (647)
....|||.+||..+|..+|..+|.+||.|..-+|..|+.||.++|.+||.|....+|+.||. |||+.-.| .+|.|++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 34589999999999999999999999999999999999999999999999999999999997 99988766 6899987
Q ss_pred Ccchhhhccccc----------ccCC------------------------CC----------CCCCCCCCCCCcEEEEcC
Q 006398 332 SEAEKNLVQSNS----------SIAG------------------------AS----------GGGTGPYSGGARRLYVGN 367 (647)
Q Consensus 332 ~~~~~~~~~~~~----------~~~~------------------------~~----------~~~~~~~~~~~~~l~v~n 367 (647)
+..+........ ...+ .+ +....+.....+||||.|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 764322111000 0000 00 001112234479999999
Q ss_pred CCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 368 LHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 368 Lp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
|.+++++..|+++|.+||.|..|+++++. +.+.+||+||.+.+.++|..||..|||..++++.|.|.|-..+
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999995 6899999999999999999999999999999999999996654
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=6.6e-22 Score=212.33 Aligned_cols=165 Identities=27% Similarity=0.373 Sum_probs=136.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCC-eeEEEEee-eCCCCCcccEEEEEecccccHHHHHH-hcC--CccCCceEEE
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGK-VRDVRLIM-DRNSRRSKGVGYVEFYDVMSVPMAIA-LSG--QPLLGQPVMV 329 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~-i~~v~~~~-~~~tg~~~g~afV~f~~~~~a~~al~-~~g--~~~~g~~i~v 329 (647)
..++|||+|||..+|+++|.+.|.+++. +..+.++. ...++.++|||||+|.+.++|..|+. |+. ..+.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4589999999999999999999999863 44444433 33456789999999999999999995 543 4688999999
Q ss_pred ccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccC--CcEEEEEeccCCCCCcceEEEEE
Q 006398 330 KPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPF--GTVELVQLPLDETGHCKGFGFVQ 407 (647)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~--G~v~~v~i~~~~~g~~~g~afVe 407 (647)
.++.+...... ......++|||+||++.+++++|+++|++| |.|..|.+++ +||||+
T Consensus 217 dwA~p~~~~d~--------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVe 275 (578)
T TIGR01648 217 DWAEPEEEVDE--------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVH 275 (578)
T ss_pred Eeecccccccc--------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEE
Confidence 88765432111 111235789999999999999999999999 9999998764 599999
Q ss_pred eCCHHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 408 FARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 408 f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
|.+.++|.+||+.||+..|+|+.|.|.|+.+..
T Consensus 276 F~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 276 FEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 999999999999999999999999999997654
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.88 E-value=5e-20 Score=177.67 Aligned_cols=327 Identities=15% Similarity=0.103 Sum_probs=219.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH---hcCCccCCceEEEc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA---LSGQPLLGQPVMVK 330 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~---~~g~~~~g~~i~v~ 330 (647)
.++-.|.|.+|...+++.+|.+.++.||+|..|.++.. +..|.|+|.+++.|++|+. -+...+.|+...+.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 34568999999999999999999999999999888754 4489999999999999984 56778899988888
Q ss_pred cCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEc--CCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEe
Q 006398 331 PSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVG--NLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 408 (647)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~--nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef 408 (647)
+++...-.... .....+...|++. |.-+.+|.+-|+.++.++|.|..|.|.+. +| -.|.|||
T Consensus 103 yStsq~i~R~g------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEF 166 (494)
T KOG1456|consen 103 YSTSQCIERPG------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEF 166 (494)
T ss_pred cchhhhhccCC------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEee
Confidence 87533221111 1111334555544 55577899999999999999999999876 33 2599999
Q ss_pred CCHHHHHHHHHHcCCceec-C-eEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCC
Q 006398 409 ARLEDARNALNLNGQLEIV-G-RAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAG 486 (647)
Q Consensus 409 ~~~~~A~~Al~~l~g~~~~-g-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (647)
.+.+.|++|.+.|||.-|+ | +.|+|.||++.......+....+++-..+..++.-...... ..+.........+.
T Consensus 167 dsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~---~r~~~p~~~~~~ps 243 (494)
T KOG1456|consen 167 DSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHY---DRQRQPAPLGYHPS 243 (494)
T ss_pred chhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCC---ccccCCCccCCChh
Confidence 9999999999999998775 3 68999999987776555555555553333211110000000 00000000000011
Q ss_pred CCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCC
Q 006398 487 SAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE 566 (647)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~ 566 (647)
.++.+. ..+.......++.++++-+........ + ......+.++.++.|.+| ....
T Consensus 244 s~~G~h-----------~~y~sg~~~~p~~~~P~r~~~~~~~~~-------g----~a~p~g~~~g~VmMVyGL--dh~k 299 (494)
T KOG1456|consen 244 SRGGGH-----------SGYYSGDRHGPPHPPPSRYRDGYRDGR-------G----YASPGGGAPGCVMMVYGL--DHGK 299 (494)
T ss_pred hcCCCC-----------CCCcccccCCCCCCCCCCCccccccCC-------C----CCCCCCCCCCcEEEEEec--cccc
Confidence 111100 111111112222222222211111100 0 111133668889999999 2222
Q ss_pred CchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 567 TYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 567 ~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
.+ .+-|+.+|..||+|..|++++...|.|+|++.++.+-++|+..||+..+.|.+|.|.+-..
T Consensus 300 ~N-------~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 300 MN-------CDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred cc-------hhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 21 5899999999999999999999999999999999999999999999999999999988543
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.6e-21 Score=191.16 Aligned_cols=172 Identities=26% Similarity=0.383 Sum_probs=147.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCC-CCCcccEEEEEecccccHHHHHH--hcC-CccCCceE
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRN-SRRSKGVGYVEFYDVMSVPMAIA--LSG-QPLLGQPV 327 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~-tg~~~g~afV~f~~~~~a~~al~--~~g-~~~~g~~i 327 (647)
+..+++|||||||.+.++++|.+.|.+.+ -|++|.++..+. ..+++|||||+|.+...|..|-. +++ +.+.|+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 55779999999999999999999999998 567777777663 57899999999999999988874 444 67899999
Q ss_pred EEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEE
Q 006398 328 MVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQ 407 (647)
Q Consensus 328 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVe 407 (647)
.|.|+.+....-.... ..-+.|||.||+..+|++.|+++|+.||.|..|+.+++ ||||+
T Consensus 241 tVdWAep~~e~ded~m--------------s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVH 299 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTM--------------SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVH 299 (506)
T ss_pred eeeccCcccCCChhhh--------------hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEe
Confidence 9999976654332221 22478999999999999999999999999999999876 99999
Q ss_pred eCCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCC
Q 006398 408 FARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDL 445 (647)
Q Consensus 408 f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~ 445 (647)
|.+.++|.+||+.+||..|+|..|.|++|++.......
T Consensus 300 f~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 300 FAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred ecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 99999999999999999999999999999987654433
No 36
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=7.6e-22 Score=181.96 Aligned_cols=270 Identities=23% Similarity=0.302 Sum_probs=159.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eecC--eEEEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL-EIVG--RAIKVSA 435 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~-~~~g--~~i~v~~ 435 (647)
.-++|||+-|...-.|++++.+|.+||.|..|.+...+.|.++|++||+|.+..+|..||..|+|. .+-| -.|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 358899999999999999999999999999999999999999999999999999999999999985 3333 5899999
Q ss_pred eecCCCCCCC---------CCC--CCCCCCCCC------------------CCCccCChHHHHHHHHHhccCCC----Cc
Q 006398 436 VTDQSGLQDL---------GAN--TTGDFDDDE------------------GGGLSLNARSRALLMQKLDRSGS----AT 482 (647)
Q Consensus 436 ~~~~~~~~~~---------~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~----~~ 482 (647)
+....+.... +.- ..-.++... ...+..........++.++..+. +.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 8776542110 000 000010000 00000001111111111111110 00
Q ss_pred cc---CCCCCCCcccCCCCCCCCcc-ccccccccccc-----------CCCCCCCCCC---------------------C
Q 006398 483 TI---AGSAVTPAVNSTALPLPTAP-LLGAASAVSTL-----------VPPLVQGTVP---------------------T 526 (647)
Q Consensus 483 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~---------------------~ 526 (647)
.. .+....|....+.+.+...+ +.+......+. .....++... .
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00 00001111111111111100 01000000000 0000000000 0
Q ss_pred CCCCC--CccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee-----CCC
Q 006398 527 HPGQL--GTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-----DSA 599 (647)
Q Consensus 527 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~-----~~~ 599 (647)
+.... ......+...++..+..++.+++|||..| |.+..| .+|.++|-+||.|++.+|.. .+|
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHL--PQEFgD--------aEliQmF~PFGhivSaKVFvDRATNQSK 327 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHL--PQEFGD--------AELIQMFLPFGHIVSAKVFVDRATNQSK 327 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeC--chhhcc--------HHHHHHhccccceeeeeeeehhcccccc
Confidence 00000 00001111111222345889999999999 888775 89999999999999988733 389
Q ss_pred ccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchh
Q 006398 600 GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 638 (647)
Q Consensus 600 G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~ 638 (647)
.|+||.|+|+.+|+.||.+|||+.|+-+.|+|++-.|..
T Consensus 328 CFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 328 CFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred ceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999999999999999876654
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.4e-21 Score=192.07 Aligned_cols=165 Identities=27% Similarity=0.469 Sum_probs=140.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCce-ecC--eEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLE-IVG--RAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~-~~g--~~i~v 433 (647)
...-+|||+.||..++|.+|+++|++||.|..|.|++|+ ++.++|+|||.|.+.++|.+|+.+|++.. |-| ..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 446789999999999999999999999999999999995 99999999999999999999999888754 333 57888
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCccccccccccc
Q 006398 434 SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVS 513 (647)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (647)
.|+......
T Consensus 112 k~Ad~E~er----------------------------------------------------------------------- 120 (510)
T KOG0144|consen 112 KYADGERER----------------------------------------------------------------------- 120 (510)
T ss_pred cccchhhhc-----------------------------------------------------------------------
Confidence 886654320
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEE
Q 006398 514 TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 593 (647)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~ 593 (647)
-+....|||+-| +..++ +.+|..+|++||.|+.|.
T Consensus 121 -----------------------------------~~~e~KLFvg~l--sK~~t--------e~evr~iFs~fG~Ied~~ 155 (510)
T KOG0144|consen 121 -----------------------------------IVEERKLFVGML--SKQCT--------ENEVREIFSRFGHIEDCY 155 (510)
T ss_pred -----------------------------------cccchhhhhhhc--ccccc--------HHHHHHHHHhhCccchhh
Confidence 013448999999 44555 799999999999999999
Q ss_pred EeeC----CCccEEEEeCChHHHHHHHHHHcCce-e--CCeEEEEEEeCchh
Q 006398 594 VEKD----SAGFVYLRFENTQSAFAAQRALHGRW-F--AGKMITATFMVPQT 638 (647)
Q Consensus 594 i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~-~--~gr~i~v~~~~~~~ 638 (647)
|++. ++|||||+|.+.+.|..||+.|||.. + +..+|.|.||+++.
T Consensus 156 ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqk 207 (510)
T KOG0144|consen 156 ILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQK 207 (510)
T ss_pred heecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCC
Confidence 9765 79999999999999999999999987 4 45679999998764
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=2.9e-21 Score=168.98 Aligned_cols=162 Identities=24% Similarity=0.411 Sum_probs=137.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...+|||+||+..++++.|+++|-+.|+|..+.++++. ++..+|||||+|.+.++|..|++.||.+.+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 35789999999999999999999999999999999994 77789999999999999999999999999999999999977
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
.....
T Consensus 88 ~~~~n--------------------------------------------------------------------------- 92 (203)
T KOG0131|consen 88 AHQKN--------------------------------------------------------------------------- 92 (203)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 22110
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEE-EEe-
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHI-FVE- 595 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v-~i~- 595 (647)
...+-.|||+|| ..+.. +.-|.+.|+.||.+... +|+
T Consensus 93 -------------------------------l~vganlfvgNL--d~~vD--------e~~L~dtFsafG~l~~~P~i~r 131 (203)
T KOG0131|consen 93 -------------------------------LDVGANLFVGNL--DPEVD--------EKLLYDTFSAFGVLISPPKIMR 131 (203)
T ss_pred -------------------------------cccccccccccc--Ccchh--------HHHHHHHHHhccccccCCcccc
Confidence 001237999999 32322 68899999999988762 332
Q ss_pred ----eCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 596 ----KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 596 ----~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
.+++||+||.|++.+.+..|+..|||..+++++|.|+|+--
T Consensus 132 d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 132 DPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred cccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 34789999999999999999999999999999999999743
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=4.5e-21 Score=179.45 Aligned_cols=149 Identities=28% Similarity=0.431 Sum_probs=137.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
-+|||||||..+++.+|+.+|++||.|+.|.|+++ ||||...+...|..||. |+|..|.|..|+|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999954 99999999999999997 9999999999999876543
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHH
Q 006398 336 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDAR 415 (647)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~ 415 (647)
. ..+++|+|+||.+.++.++|+..|++||+|..|.|+++ |+||+|.-.++|.
T Consensus 75 s---------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~ 126 (346)
T KOG0109|consen 75 S---------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAV 126 (346)
T ss_pred C---------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchH
Confidence 1 34689999999999999999999999999999999865 9999999999999
Q ss_pred HHHHHcCCceecCeEEEEEEeecCCC
Q 006398 416 NALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 416 ~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
.|+..|++..|.|+.++|..++....
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred HHHhcccccccccceeeeeeeccccc
Confidence 99999999999999999999877543
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=174.88 Aligned_cols=146 Identities=25% Similarity=0.431 Sum_probs=133.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
.+|||+|||..+++.+|+.+|++||.|..|.|+++ |+||+..+...|..||.-|+|..|+|..|.|.-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999999999999999999999999999976 99999999999999999999999999999999877653
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCC
Q 006398 441 GLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLV 520 (647)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (647)
.
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCc
Q 006398 521 QGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAG 600 (647)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G 600 (647)
++++|+|+|| .+.++ -.+|+..|.+||.|+.|.|.+ +
T Consensus 77 ------------------------------~stkl~vgNi--s~tct--------n~ElRa~fe~ygpviecdivk---d 113 (346)
T KOG0109|consen 77 ------------------------------ASTKLHVGNI--SPTCT--------NQELRAKFEKYGPVIECDIVK---D 113 (346)
T ss_pred ------------------------------CccccccCCC--Ccccc--------CHHHhhhhcccCCceeeeeec---c
Confidence 4558999999 55666 389999999999999999966 6
Q ss_pred cEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeC
Q 006398 601 FVYLRFENTQSAFAAQRALHGRWFAGKMITATFMV 635 (647)
Q Consensus 601 ~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~ 635 (647)
++||.|+-.++|..|+..|+|..|.|++|+|++-+
T Consensus 114 y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 99999999999999999999999999999999854
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.82 E-value=1.8e-18 Score=169.10 Aligned_cols=288 Identities=18% Similarity=0.235 Sum_probs=198.8
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEE--EccC-
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM--VKPS- 332 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~--v~~~- 332 (647)
-.++|+++-+-++-+-|..+|++||.|..|.....- ..-.|+|+|.+++.|+.|-. |+|..|..-.+. |.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 367899999999999999999999999988776322 22349999999999999985 999988764433 3222
Q ss_pred ---------cchh-hhcccccc---------------------cCCCCC---------CCC-CCCCC--CCcEEEEcCCC
Q 006398 333 ---------EAEK-NLVQSNSS---------------------IAGASG---------GGT-GPYSG--GARRLYVGNLH 369 (647)
Q Consensus 333 ---------~~~~-~~~~~~~~---------------------~~~~~~---------~~~-~~~~~--~~~~l~v~nLp 369 (647)
..+. +...+... ..+.+. ... +.... ....|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 1000 00000000 000000 000 11111 14778888885
Q ss_pred -CCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCC
Q 006398 370 -FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGAN 448 (647)
Q Consensus 370 -~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 448 (647)
..+|.+.|..+|.-||.|..|+|..++ +.-|+|+|.+...|..|++.|+|..|.|+.|+|++++....+....+.
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 568999999999999999999998873 235999999999999999999999999999999998775532222111
Q ss_pred CCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCCCCCCCCC
Q 006398 449 TTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHP 528 (647)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (647)
...++--.+ +..++
T Consensus 383 ~d~glT~dy-~~spL----------------------------------------------------------------- 396 (492)
T KOG1190|consen 383 EDQGLTKDY-GNSPL----------------------------------------------------------------- 396 (492)
T ss_pred ccccccccC-CCCch-----------------------------------------------------------------
Confidence 111110000 00000
Q ss_pred CCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCe-EEEEEeeCCCccEEEEeC
Q 006398 529 GQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKL-KHIFVEKDSAGFVYLRFE 607 (647)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V-~~v~i~~~~~G~afV~F~ 607 (647)
.. .+......+....+|+.+|.+.|+ |...+ +++|+.+|..-|.+ ...++....+..|++++.
T Consensus 397 ----hr--fkkpgsKN~~ni~PpsatlHlsni--p~svs--------ee~lk~~f~~~g~~vkafkff~kd~kmal~q~~ 460 (492)
T KOG1190|consen 397 ----HR--FKKPGSKNYQNIFPPSATLHLSNI--PPSVS--------EEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLE 460 (492)
T ss_pred ----hh--ccCcccccccccCCchhheeeccC--Ccccc--------hhHHHHhhhcCCceEEeeeecCCCcceeecccC
Confidence 00 000111223444578889999999 76666 79999999987755 556666667789999999
Q ss_pred ChHHHHHHHHHHcCceeCCe-EEEEEEe
Q 006398 608 NTQSAFAAQRALHGRWFAGK-MITATFM 634 (647)
Q Consensus 608 ~~e~A~~A~~~lnG~~~~gr-~i~v~~~ 634 (647)
++|+|..|+..|+...+++. .|+|+|-
T Consensus 461 sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 461 SVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred ChhHhhhhccccccccCCCCceEEEEee
Confidence 99999999999999999866 8999984
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.82 E-value=6.4e-19 Score=169.22 Aligned_cols=210 Identities=23% Similarity=0.370 Sum_probs=158.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEE--------EEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--------LVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~ 429 (647)
.....|||.|||..+|.+++.++|.+||.|. .|.|+.+..|..+|-|++.|-..+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4457799999999999999999999999873 57889998899999999999999999999999999999999
Q ss_pred EEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCccccccc
Q 006398 430 AIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAA 509 (647)
Q Consensus 430 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (647)
.|+|..|.............. ..-.+......+++.....-..
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~----------k~k~~~~kk~~k~q~k~~dw~p--------------------------- 254 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKE----------KGKCKDKKKLKKQQQKLLDWRP--------------------------- 254 (382)
T ss_pred EEEEehhhhhhccCcCccccc----------ccccccHHHHHHHHHhhcccCC---------------------------
Confidence 999999877543221111000 0001111111111111111000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCch-hhhhhHHHHHHHHhhhcCC
Q 006398 510 SAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYE-EFDMDIKEDVEGECSKFGK 588 (647)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~-~~~~~~~~dl~~~F~~fG~ 588 (647)
. .+ -.......++|+|+|||+|..+... +.+.+|.+||.+.|.+||.
T Consensus 255 ------------------d--------~~------~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~ 302 (382)
T KOG1548|consen 255 ------------------D--------RD------DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQ 302 (382)
T ss_pred ------------------C--------cc------ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 0 00 0000124568999999999887655 7889999999999999999
Q ss_pred eEEEEE-eeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 589 LKHIFV-EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 589 V~~v~i-~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
|.+|.| .+.+.|.+-|.|.|.++|..||+.|+|+.|.|+.|..+....
T Consensus 303 v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 303 VRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred cceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 999988 566899999999999999999999999999999999987543
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=187.82 Aligned_cols=173 Identities=27% Similarity=0.476 Sum_probs=148.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCC---CCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS---RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+|||.||++.+|.++|...|..+|.|..+.|...+.- -.+.|||||+|.++++|+.|+. |+|+.|.|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 3999999999999999999999999999988876541 1367999999999999999997 99999999999999886
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
..+.... +........++.|+|.|||+.++..+|+++|..||.|..|.|++. ..+..+|||||+|.++.
T Consensus 597 ~k~~~~~----------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 597 NKPASTV----------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred Ccccccc----------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 1111100 011122233689999999999999999999999999999999998 56667999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
.|.+|+.+|.+..|+|+.|.+.|+....
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccch
Confidence 9999999999999999999999988754
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.80 E-value=3.8e-17 Score=164.45 Aligned_cols=172 Identities=24% Similarity=0.292 Sum_probs=136.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
....|.+.+|||.+|+++|.+||+.|+ |.++.+. ..+|+..|-|||+|.+.+++++||+++...+..+.|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 447899999999999999999999995 6664444 4468999999999999999999999999999999999976644
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE-EEeccCCCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLDETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~~~g~~~g~afVef~~~~~ 413 (647)
........... .....+.-.|-|++||+.+++++|.+||+..-.|.. |.++.+..+.+.|-|||+|.+.+.
T Consensus 86 ~e~d~~~~~~g--------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 86 AEADWVMRPGG--------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccccccCCC--------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 33311111100 001134568999999999999999999998876655 678888888899999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeec
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
|++||.... ..|+-+-|.|-.+.-
T Consensus 158 ae~Al~rhr-e~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 158 AEIALGRHR-ENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHHHHHHH-HhhccceEEeehhHH
Confidence 999998443 567778888776544
No 45
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.4e-18 Score=177.05 Aligned_cols=150 Identities=27% Similarity=0.418 Sum_probs=134.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 362 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
.|||+ +.+|+.+|.++|+++|.|..|.+..+. + +-|||||.|.++++|..||..||...+.|++|+|.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 58887 889999999999999999999999998 6 99999999999999999999999999999999999955422
Q ss_pred CCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCCC
Q 006398 442 LQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLVQ 521 (647)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (647)
T Consensus 77 -------------------------------------------------------------------------------- 76 (369)
T KOG0123|consen 77 -------------------------------------------------------------------------------- 76 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---C
Q 006398 522 GTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---S 598 (647)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~---~ 598 (647)
..|||+|| +..++ ..+|.++|+.||+|++|++..+ +
T Consensus 77 -------------------------------~~~~i~nl--~~~~~--------~~~~~d~f~~~g~ilS~kv~~~~~g~ 115 (369)
T KOG0123|consen 77 -------------------------------SLVFIKNL--DESID--------NKSLYDTFSEFGNILSCKVATDENGS 115 (369)
T ss_pred -------------------------------ceeeecCC--CcccC--------cHHHHHHHHhhcCeeEEEEEEcCCCc
Confidence 02999999 55555 4899999999999999999654 6
Q ss_pred CccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhh
Q 006398 599 AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 639 (647)
Q Consensus 599 ~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~ 639 (647)
+|+ ||+|+++++|.+|+..|||..+.|+.|.|..+.....
T Consensus 116 kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 116 KGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 888 9999999999999999999999999999998877655
No 46
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.76 E-value=3.3e-18 Score=169.37 Aligned_cols=177 Identities=24% Similarity=0.409 Sum_probs=155.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
..++||||+|++.++++.|++.|.+||.|.+|.+++++.+++++||+||+|.+++....+|......|.|+.|.++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999998888899999999987765
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~ 413 (647)
.......... .....|||++||..++++++++.|++||.|..+.++.+ .+...+||+||.|.+.+.
T Consensus 85 r~~~~~~~~~-------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 85 REDQTKVGRH-------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred cccccccccc-------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 5443222111 24689999999999999999999999999999988888 588899999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecCCCCCCC
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQSGLQDL 445 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~ 445 (647)
+.+++. +.-+.|+|++|.|..|.++......
T Consensus 152 Vdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 152 VDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cceecc-cceeeecCceeeEeeccchhhcccc
Confidence 998886 4457899999999999998775544
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=1.1e-17 Score=161.08 Aligned_cols=169 Identities=22% Similarity=0.432 Sum_probs=138.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+.|.+.+.++.|+..|.+||+|..|.+..++ +++.+|||||+|.-++.|+.|++.|||..++|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5789999999999999999999999999999999884 999999999999999999999999999999999999985221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
++...+-..++......
T Consensus 193 ----------------------mpQAQpiID~vqeeAk~----------------------------------------- 209 (544)
T KOG0124|consen 193 ----------------------MPQAQPIIDMVQEEAKK----------------------------------------- 209 (544)
T ss_pred ----------------------CcccchHHHHHHHHHHh-----------------------------------------
Confidence 11111111111111111
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 597 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~- 597 (647)
-+.|||..+ -..+. +.||+..|..||.|++|.+-+.
T Consensus 210 ---------------------------------fnRiYVaSv--HpDLS--------e~DiKSVFEAFG~I~~C~LAr~p 246 (544)
T KOG0124|consen 210 ---------------------------------FNRIYVASV--HPDLS--------ETDIKSVFEAFGEIVKCQLARAP 246 (544)
T ss_pred ---------------------------------hheEEeeec--CCCcc--------HHHHHHHHHhhcceeeEEeeccC
Confidence 127888888 44444 5899999999999999999543
Q ss_pred ----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 598 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 598 ----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
-+||+||+|.+.++-..|+..||=+.++|.-|+|--+
T Consensus 247 t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 247 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred CCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 4799999999999999999999999999999998654
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.74 E-value=1.5e-16 Score=145.78 Aligned_cols=207 Identities=22% Similarity=0.337 Sum_probs=146.1
Q ss_pred CcEEEEcCCCCCCCHHHHHH----hhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 360 ARRLYVGNLHFNMTEDQLRQ----VFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~----~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
..+|||.||+..+..++|+. +|+.||.|..|...+. ...+|-|||.|.+.+.|..|+..|+|+.|.|+.++|.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44999999999999988888 9999999999988765 45588999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCccccccccccccc
Q 006398 436 VTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTL 515 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (647)
|..+.............-.... .. ..+.... .+.. .++..+.
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~------~~-------~~~~~~~----------~~~~-------~ng~~~~-------- 128 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKI------NG-------EILARIK----------QPLD-------TNGHFYN-------- 128 (221)
T ss_pred ccCccchhhccCceeccccCcc------cc-------ccccccC----------Cccc-------ccccccc--------
Confidence 9988763322110000000000 00 0000000 0000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEe
Q 006398 516 VPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE 595 (647)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~ 595 (647)
+.......+. .....+|..+||+.|| |.+++ .+-|..+|..|.....|.++
T Consensus 129 --------------~~~~~~p~p~-----~~~~~ppn~ilf~~ni--P~es~--------~e~l~~lf~qf~g~keir~i 179 (221)
T KOG4206|consen 129 --------------MNRMNLPPPF-----LAQMAPPNNILFLTNI--PSESE--------SEMLSDLFEQFPGFKEIRLI 179 (221)
T ss_pred --------------cccccCCCCc-----cccCCCCceEEEEecC--Ccchh--------HHHHHHHHhhCcccceeEec
Confidence 0000000000 0222457779999999 77766 68888999999999999998
Q ss_pred eCCCccEEEEeCChHHHHHHHHHHcCceeC-CeEEEEEEeC
Q 006398 596 KDSAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMV 635 (647)
Q Consensus 596 ~~~~G~afV~F~~~e~A~~A~~~lnG~~~~-gr~i~v~~~~ 635 (647)
..-.+.|||+|.+...|..|...|+|..+- ...|.|.|+.
T Consensus 180 ~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 180 PPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 888899999999999999999999999996 9999999874
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=6e-17 Score=167.99 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=146.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
...+||++||..+++..+.+++..||++....++.+..+|.++||||.+|.++.....|++ |||..+++..|.|+.+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 4678999999999999999999999999999999999999999999999999999999998 999999999999987765
Q ss_pred hhhhcccccc--c---CCCCCCCCCCCCCCCcEEEEcCCCC--CC-CH-------HHHHHhhccCCcEEEEEeccC-C--
Q 006398 335 EKNLVQSNSS--I---AGASGGGTGPYSGGARRLYVGNLHF--NM-TE-------DQLRQVFEPFGTVELVQLPLD-E-- 396 (647)
Q Consensus 335 ~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~v~nLp~--~~-~e-------~~l~~~f~~~G~v~~v~i~~~-~-- 396 (647)
.......... + .+-..........++..|++.|+-. .+ .+ ++|+..+.+||.|..|.|+.. .
T Consensus 369 g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~ 448 (500)
T KOG0120|consen 369 GASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDE 448 (500)
T ss_pred cchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCC
Confidence 5443333222 1 1111111233445677888888732 11 22 566667779999999999887 3
Q ss_pred -CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 397 -TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 397 -~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.....|.+||+|.+.++++.|++.|+|..|.|+.|.+.|...
T Consensus 449 ~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 449 NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 334578999999999999999999999999999999999644
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.72 E-value=1.7e-16 Score=145.42 Aligned_cols=176 Identities=17% Similarity=0.319 Sum_probs=143.6
Q ss_pred CCCeEEEecCCCCCCHHHHHH----HHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEE
Q 006398 255 DQRTVFAYQICLKADERDVYE----FFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 329 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~----~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v 329 (647)
++.||||.||+..+..++|+. +|++||.|..|.... |.+.+|.|||.|.+.+.|..|+. |+|..+.|++|.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999999888 999999999999884 56799999999999999999996 9999999999999
Q ss_pred ccCcchhhhccccc---------------------ccCCC------CCCCC----CCCCCCCcEEEEcCCCCCCCHHHHH
Q 006398 330 KPSEAEKNLVQSNS---------------------SIAGA------SGGGT----GPYSGGARRLYVGNLHFNMTEDQLR 378 (647)
Q Consensus 330 ~~~~~~~~~~~~~~---------------------~~~~~------~~~~~----~~~~~~~~~l~v~nLp~~~~e~~l~ 378 (647)
+|+..+........ ....+ ..... .....+...|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99875544322210 00000 00000 2235678899999999999999999
Q ss_pred HhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CeEEEEEEee
Q 006398 379 QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVT 437 (647)
Q Consensus 379 ~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~ 437 (647)
.+|++|.....|.++.. ..++|||+|.+...|..|.+.+++..|- ...+.|.++.
T Consensus 165 ~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988875 3678999999999999999999999886 7888888764
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3e-17 Score=151.76 Aligned_cols=185 Identities=24% Similarity=0.403 Sum_probs=146.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCc-cCC--ceEEEc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQP-LLG--QPVMVK 330 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~-~~g--~~i~v~ 330 (647)
..++||||.|...-.|+|++.+|..||.|.+|.+.+.+. |.+||+|||.|.+.-+|..||. |+|.. +.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 457999999999999999999999999999999998876 8899999999999999999996 88854 444 457777
Q ss_pred cCcchhhhcccc--------------------------------------------------------------------
Q 006398 331 PSEAEKNLVQSN-------------------------------------------------------------------- 342 (647)
Q Consensus 331 ~~~~~~~~~~~~-------------------------------------------------------------------- 342 (647)
+++.+++....-
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 665222110000
Q ss_pred -----------c------------ccCCCCC---------C---------------------------------------
Q 006398 343 -----------S------------SIAGASG---------G--------------------------------------- 351 (647)
Q Consensus 343 -----------~------------~~~~~~~---------~--------------------------------------- 351 (647)
+ ...+..+ +
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 0000000 0
Q ss_pred --------------------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCC
Q 006398 352 --------------------GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFAR 410 (647)
Q Consensus 352 --------------------~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~ 410 (647)
......+..+.|||..||......+|.+.|-+||.|...++..+ .++.++.|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00001233689999999999999999999999999999888888 699999999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 411 LEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 411 ~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
+.+|+.||+.|||+.|+-+.|+|..-.++.
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 999999999999999999999988765554
No 52
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=1.1e-15 Score=148.46 Aligned_cols=297 Identities=21% Similarity=0.224 Sum_probs=199.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
....|...+||+..+..+|..||.-.....-...+..-..|...|.|.|.|.+.+.-..|++.+...++++.|.|-.+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 44567889999999999999999876544433444433457889999999999999999999999999999999966654
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccC----CcEEEEEeccCCCCCcceEEEEEeCC
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPF----GTVELVQLPLDETGHCKGFGFVQFAR 410 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~----G~v~~v~i~~~~~g~~~g~afVef~~ 410 (647)
............ ....-......-.|-+++||+++++.+|..+|.+. |.+..|.++..+.|+.+|-|||.|..
T Consensus 139 e~f~~iagg~s~---e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 139 EEFLKIAGGTSN---EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC 215 (508)
T ss_pred hhheEecCCccc---cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC
Confidence 444322211111 11111122345678889999999999999999743 34567777777889999999999999
Q ss_pred HHHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCC
Q 006398 411 LEDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVT 490 (647)
Q Consensus 411 ~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (647)
.++|+.||...- ..|+-+-|.+-.++ .++..+-+...... .+.+..+.
T Consensus 216 ee~aq~aL~khr-q~iGqRYIElFRST------------------------------aaEvqqvlnr~~s~-pLi~~~~s 263 (508)
T KOG1365|consen 216 EEDAQFALRKHR-QNIGQRYIELFRST------------------------------AAEVQQVLNREVSE-PLIPGLTS 263 (508)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHh------------------------------HHHHHHHHHhhccc-cccCCCCC
Confidence 999999997443 22333434333322 12233333222110 00000000
Q ss_pred CcccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchh
Q 006398 491 PAVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEE 570 (647)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~ 570 (647)
|..+. . -...+ .......||.+.+| |++.+
T Consensus 264 p~~p~------------~---p~~~~------------------------------p~~~~kdcvRLRGL--Py~At--- 293 (508)
T KOG1365|consen 264 PLLPG------------G---PARLV------------------------------PPTRSKDCVRLRGL--PYEAT--- 293 (508)
T ss_pred CCCCC------------C---ccccC------------------------------CCCCCCCeeEecCC--Chhhh---
Confidence 00000 0 00000 00123569999999 98877
Q ss_pred hhhhHHHHHHHHhhhcCCeEE---EEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhc
Q 006398 571 FDMDIKEDVEGECSKFGKLKH---IFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 641 (647)
Q Consensus 571 ~~~~~~~dl~~~F~~fG~V~~---v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~ 641 (647)
.+||.+||..|-.-+. |.+.-| +.|.|||+|.+++.|..|...-+.....++-|.|--+.-+++++
T Consensus 294 -----vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 294 -----VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred -----HHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 7999999999864433 334332 57999999999999999999988888889999888887777764
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.5e-15 Score=133.14 Aligned_cols=164 Identities=21% Similarity=0.305 Sum_probs=128.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
..++|||||||.+|-+.+|.++|-+||.|..|.+...+ ...+||||+|.++.+|+.||. .+|..+.|..|.|.++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 45899999999999999999999999999999987543 246799999999999999997 99999999999998775
Q ss_pred chhhhcccccccCC------CCCC-CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEE
Q 006398 334 AEKNLVQSNSSIAG------ASGG-GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFV 406 (647)
Q Consensus 334 ~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afV 406 (647)
.............+ .... -.++..-....|+|.+||+...+++|++.+.+.|.|-...+.++ |++.|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 43311111110000 0001 11222233567999999999999999999999999988888776 58999
Q ss_pred EeCCHHHHHHHHHHcCCceec
Q 006398 407 QFARLEDARNALNLNGQLEIV 427 (647)
Q Consensus 407 ef~~~~~A~~Al~~l~g~~~~ 427 (647)
+|...++...|+..|....+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeehhhHHHHHHhhcccccc
Confidence 999999999999887765553
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.65 E-value=4.2e-15 Score=134.35 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=134.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-C-CCCcceEEEEEeCCHHHHHHHHHHcCCceec---CeEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-E-TGHCKGFGFVQFARLEDARNALNLNGQLEIV---GRAIKV 433 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~---g~~i~v 433 (647)
.-++|||.+||.++...+|+.+|..|-.-+.+.|-.. + ....+-+|||.|.+...|.+|+.+|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999866655555443 2 2234679999999999999999999999996 679999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHH-HHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccc
Q 006398 434 SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSR-ALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAV 512 (647)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (647)
.+++..............+ +.........+.... ...++..........+......+.+. ++...+......
T Consensus 113 ElAKSNtK~kr~k~sgtP~-~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~------~~~~t~~~~l~a 185 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPG-SSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALK------ENDTTKSEALSA 185 (284)
T ss_pred eehhcCcccccCCCCCCCC-CCccccccccChhhcccchhhccccccCccccCCccccccCC------Cccccchhhhhh
Confidence 9998776543322211111 101001111111111 11111111110000000000000000 000000000000
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEE
Q 006398 513 STLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHI 592 (647)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v 592 (647)
+..+.|+.....+ +. .........-.+|||.|| ..+++ +++|+.+|+.|-....+
T Consensus 186 ~~~~~P~a~a~l~-----------ks----~q~~~~~~acstlfianl--~~~~~--------ed~l~~~~~~~~gf~~l 240 (284)
T KOG1457|consen 186 PDSKAPSANAHLE-----------KS----SQGGSGARACSTLFIANL--GPNCT--------EDELKQLLSRYPGFHIL 240 (284)
T ss_pred hhhcCCcccchhh-----------hh----hcccccchhhhhHhhhcc--CCCCC--------HHHHHHHHHhCCCceEE
Confidence 0000000000000 00 000011223458999999 55666 79999999999988888
Q ss_pred EE-eeCCCccEEEEeCChHHHHHHHHHHcCcee
Q 006398 593 FV-EKDSAGFVYLRFENTQSAFAAQRALHGRWF 624 (647)
Q Consensus 593 ~i-~~~~~G~afV~F~~~e~A~~A~~~lnG~~~ 624 (647)
+| .+++...|||+|.+.+.|..|+..|+|..|
T Consensus 241 ~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 241 KIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred EEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 88 455667889999999999999999999887
No 55
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.62 E-value=2.8e-14 Score=137.58 Aligned_cols=184 Identities=19% Similarity=0.226 Sum_probs=142.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCee--------EEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVR--------DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
..+..|||.|||.++|.+++.++|.+||.|. .|.|+.+.. |.-+|-|++.|...+++..|+. |++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3446799999999999999999999999776 588888877 9999999999999999999998 99999999
Q ss_pred ceEEEccCcchhhh------------------cc-cccccCCCCCCCCCCCCCCCcEEEEcCCCCC----CC-------H
Q 006398 325 QPVMVKPSEAEKNL------------------VQ-SNSSIAGASGGGTGPYSGGARRLYVGNLHFN----MT-------E 374 (647)
Q Consensus 325 ~~i~v~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~----~~-------e 374 (647)
..|.|..+.....- .. ......+.+.-.........++|.|.||-.. .+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999765421110 00 0001111111122333455688999998532 23 3
Q ss_pred HHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 375 DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 375 ~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
++|.+.+++||.|..|.|... .+.|.+.|.|.+.+.|..||++|+|.+|+|++|.+........
T Consensus 291 edl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 677788899999999988754 3467899999999999999999999999999999988666543
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.60 E-value=8e-13 Score=128.30 Aligned_cols=296 Identities=18% Similarity=0.191 Sum_probs=195.3
Q ss_pred CCCCCeEEEecC--CCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC--ceE
Q 006398 253 ERDQRTVFAYQI--CLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG--QPV 327 (647)
Q Consensus 253 ~~~~~~v~v~~L--p~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g--~~i 327 (647)
..++..|.+.=| -+.||-+-|..+....|+|..|.|++. .-=.|.|+|.+.+.|++|-+ |||..|.. =+|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 334455555544 355999999999999999999999854 22379999999999999997 99988865 456
Q ss_pred EEccCcchhhhccccc-----------------------------------ccCCC-CC---------------------
Q 006398 328 MVKPSEAEKNLVQSNS-----------------------------------SIAGA-SG--------------------- 350 (647)
Q Consensus 328 ~v~~~~~~~~~~~~~~-----------------------------------~~~~~-~~--------------------- 350 (647)
+|.++.+..-.+..+. ...++ ..
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~ 271 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDG 271 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccc
Confidence 6666653211100000 00000 00
Q ss_pred ------CCCCCCCCCCcEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 006398 351 ------GGTGPYSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ 423 (647)
Q Consensus 351 ------~~~~~~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g 423 (647)
........+...++|.+|... ++-+.|.++|-.||.|..|.+++.+. |.|.|++.+....+.|+..||+
T Consensus 272 ~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 272 YRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred cccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhcc
Confidence 000012234678999999765 68899999999999999999998744 4699999999999999999999
Q ss_pred ceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCc
Q 006398 424 LEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTA 503 (647)
Q Consensus 424 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (647)
..+.|..|.|.+++........ .+.... ++|.+ ..+.+...
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~------pflLpD-------------------------------gSpSf--Kdys~SkN 388 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQ------PFLLPD-------------------------------GSPSF--KDYSGSKN 388 (494)
T ss_pred CccccceEEEeeccccccccCC------ceecCC-------------------------------CCcch--hhcccccc
Confidence 9999999999987765432110 000000 00000 00000000
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHh
Q 006398 504 PLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGEC 583 (647)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F 583 (647)
..+..+ ....-.-..+|+++|...|. |.++| ++.|..+|
T Consensus 389 nRFssp-------------------------------~qAsKNrIq~Ps~vLHffNa--P~~vt--------Ee~l~~i~ 427 (494)
T KOG1456|consen 389 NRFSSP-------------------------------EQASKNRIQPPSNVLHFFNA--PLGVT--------EEQLIGIC 427 (494)
T ss_pred cccCCh-------------------------------hHhhcccccCCcceeEEecC--CCccC--------HHHHHHHh
Confidence 000000 00001112458889999999 88888 78999999
Q ss_pred hhcCCe-EEEEEee--C-CCccEEEEeCChHHHHHHHHHHcCceeCCe------EEEEEEeCch
Q 006398 584 SKFGKL-KHIFVEK--D-SAGFVYLRFENTQSAFAAQRALHGRWFAGK------MITATFMVPQ 637 (647)
Q Consensus 584 ~~fG~V-~~v~i~~--~-~~G~afV~F~~~e~A~~A~~~lnG~~~~gr------~i~v~~~~~~ 637 (647)
..-+.. .+|+|.. . ....+.++|++.++|..||..||...+.+. +|++.|.+..
T Consensus 428 nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred hhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 876643 3455422 1 124579999999999999999999998653 5777777654
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.3e-13 Score=121.15 Aligned_cols=183 Identities=19% Similarity=0.249 Sum_probs=132.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
..+.|||+|||..+-+.+|.++|.+||.|..|.|-...- ...||||+|.++-+|..||..-+|..++|+.|+|.|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 468899999999999999999999999999998754321 357999999999999999999999999999999999766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
......... +++..... +. +.....-|
T Consensus 83 gr~s~~~~G---------------------------------------~y~gggrg--Gg-----------g~gg~rgp- 109 (241)
T KOG0105|consen 83 GRSSSDRRG---------------------------------------SYSGGGRG--GG-----------GGGGRRGP- 109 (241)
T ss_pred CCccccccc---------------------------------------ccCCCCCC--CC-----------CCCcccCC-
Confidence 542111000 00000000 00 00000000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCC
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDS 598 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~ 598 (647)
..-.....|+|.+| |.... ++||+++..+-|.|+...+.++
T Consensus 110 ----------------------------psrrSe~RVvVsGL--p~SgS--------WQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 110 ----------------------------PSRRSEYRVVVSGL--PPSGS--------WQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred ----------------------------cccccceeEEEecC--CCCCc--------hHHHHHHHHhhCCeeeeeeecc-
Confidence 00112337899999 55544 8999999999999999988776
Q ss_pred CccEEEEeCChHHHHHHHHHHcCcee--CCeEEEEEEeCc
Q 006398 599 AGFVYLRFENTQSAFAAQRALHGRWF--AGKMITATFMVP 636 (647)
Q Consensus 599 ~G~afV~F~~~e~A~~A~~~lnG~~~--~gr~i~v~~~~~ 636 (647)
|++.|+|...|+...|+..|....| .|-...+.+...
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~ 189 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGD 189 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEeccc
Confidence 5889999999999999999998877 466666655444
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=9.5e-15 Score=130.82 Aligned_cols=83 Identities=28% Similarity=0.522 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
...+|||+|||+.+|+++|+++|.+||.|..|.|+.+..|+.++|||||+|.+.++|+.||+ |++..|.|+.|.|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45789999999999999999999999999999999999999999999999999999999997 99999999999999886
Q ss_pred chhh
Q 006398 334 AEKN 337 (647)
Q Consensus 334 ~~~~ 337 (647)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 5443
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.4e-14 Score=134.64 Aligned_cols=162 Identities=31% Similarity=0.444 Sum_probs=129.1
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
..||||+||+.+.+.+|..||..||.|.+|.+. .||+||+|.+..+|..|+- +++..|.|..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999999886 4699999999999999995 9999999988888777644
Q ss_pred hhhcccccccCCCC-CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHH
Q 006398 336 KNLVQSNSSIAGAS-GGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 414 (647)
Q Consensus 336 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A 414 (647)
.............. ...-.........|+|.+++..+.+++|.+.|.++|.+....+ ..+++||+|...++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 33220000000000 0111122344678999999999999999999999999855444 256899999999999
Q ss_pred HHHHHHcCCceecCeEEEE
Q 006398 415 RNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 415 ~~Al~~l~g~~~~g~~i~v 433 (647)
..|+..|++..+.++.|.+
T Consensus 147 ~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhcchhccchhhcCceeee
Confidence 9999999999999999999
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=1.1e-13 Score=124.01 Aligned_cols=85 Identities=32% Similarity=0.558 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|..||+.|++..|+|+.|.|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999999988 5889999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876543
No 61
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.49 E-value=1.3e-13 Score=136.92 Aligned_cols=172 Identities=25% Similarity=0.461 Sum_probs=144.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...+|||++|+|.++++.|+..|.+||.|..|.+.++ .++.++||+||+|.+++.+..+|..-. +.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-cccCCccccceecc
Confidence 4688999999999999999999999999999999998 589999999999999999998887544 67999999988877
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
.....+....
T Consensus 84 ~r~~~~~~~~---------------------------------------------------------------------- 93 (311)
T KOG4205|consen 84 SREDQTKVGR---------------------------------------------------------------------- 93 (311)
T ss_pred Cccccccccc----------------------------------------------------------------------
Confidence 6553221110
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 597 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~ 597 (647)
...+..|||++| |..++ +++|.+.|.+||.|..+.++.+
T Consensus 94 -------------------------------~~~tkkiFvGG~--~~~~~--------e~~~r~yfe~~g~v~~~~~~~d 132 (311)
T KOG4205|consen 94 -------------------------------HLRTKKIFVGGL--PPDTT--------EEDFKDYFEQFGKVADVVIMYD 132 (311)
T ss_pred -------------------------------ccceeEEEecCc--CCCCc--------hHHHhhhhhccceeEeeEEeec
Confidence 115669999999 77777 7999999999998888877543
Q ss_pred -----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccC
Q 006398 598 -----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKF 643 (647)
Q Consensus 598 -----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~ 643 (647)
.+||+||+|.+.+...+++. ..-..|+|+.|.|--|.+.+...-.
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 68999999999999998886 4888999999999999998876543
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=2.7e-12 Score=127.02 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=143.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhc-cCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFE-PFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~-~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
....+.+||+|||+++.+++|+++|. +.|.|.+|.|+.+..|+++|+|.|||.++|.+++|++.||.+.+.|++|.|.-
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34456799999999999999999996 68999999999999999999999999999999999999999999999999987
Q ss_pred eecCCCCCCCCCC--CCCCCCC---CCCCCccCChHHHHHHHHHhccCCCCcccCCCC--CCCcccCCCCCC-CCccccc
Q 006398 436 VTDQSGLQDLGAN--TTGDFDD---DEGGGLSLNARSRALLMQKLDRSGSATTIAGSA--VTPAVNSTALPL-PTAPLLG 507 (647)
Q Consensus 436 ~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~ 507 (647)
..+....+..... -...+.. ...++..++. ..+.++.. +.+......+.. .+...+.
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~---------------~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~ 185 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNG---------------GGGGGGDRDRGFSRRDDDRLSRRNNTNTMS 185 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccc---------------cCCCCccccCCCCcccccccccccCccccc
Confidence 6654321111000 0000000 0000000000 00000000 000000000000 0000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcC
Q 006398 508 AASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG 587 (647)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG 587 (647)
..+...+. ... + ..+. .+-.+-+.-.++-...+||.|| ...+. ...|.+.|.--|
T Consensus 186 ------~~~~~~~~---~~l-f-gl~~----~Flr~~h~f~pPl~~k~fvanl--~~~vg--------~~kL~qvfgmAG 240 (608)
T KOG4212|consen 186 ------NDYNNSSN---YNL-F-GLSA----SFLRSLHIFSPPLHNKVFVANL--DYKVG--------NKKLKQVFGMAG 240 (608)
T ss_pred ------cccccchh---hhc-c-cchh----hhhhhccCCCCCccceeeeecc--ccccc--------hHHHHHHhccce
Confidence 00000000 000 0 0000 0000000112344557899999 44433 488999999999
Q ss_pred CeEEEEE--e--eCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 588 KLKHIFV--E--KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 588 ~V~~v~i--~--~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
.|+.|.+ . .+++|+|.|+|.++-+|-.||..|++..++.+++++.+-
T Consensus 241 kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 241 KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 9998765 2 347899999999999999999999998888999888773
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.8e-13 Score=125.97 Aligned_cols=167 Identities=20% Similarity=0.359 Sum_probs=126.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
..+||++||+.+.+.+|..+|..||.|..|.+. .||+||+|.+..+|..|+.-|++..|+|-.+.|.|+....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 469999999999999999999999999988774 4689999999999999999999999999889999877644
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCC
Q 006398 441 GLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLV 520 (647)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (647)
..+.. |..+ ...+.+..
T Consensus 75 ~~~g~---------------------------------------------~~~g------------~r~~~~~~------ 91 (216)
T KOG0106|consen 75 RGRGR---------------------------------------------PRGG------------DRRSDSRR------ 91 (216)
T ss_pred cccCC---------------------------------------------CCCC------------Cccchhhc------
Confidence 21100 0000 00000000
Q ss_pred CCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCc
Q 006398 521 QGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAG 600 (647)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G 600 (647)
+....-....|+|.|+ +.... +.+|.+.|+.+|.+....+ ..+
T Consensus 92 ------------------------~~~p~~s~~r~~~~~~--~~r~~--------~qdl~d~~~~~g~~~~~~~---~~~ 134 (216)
T KOG0106|consen 92 ------------------------YRPPSRTHFRLIVRNL--SLRVS--------WQDLKDHFRPAGEVTYVDA---RRN 134 (216)
T ss_pred ------------------------cCCcccccceeeeccc--hhhhh--------HHHHhhhhcccCCCchhhh---hcc
Confidence 0000112336778888 33322 6999999999999976655 557
Q ss_pred cEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 601 FVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 601 ~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
++||+|.+.++|.+|+..|+|..+.|++|.+.+.
T Consensus 135 ~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 135 FAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 8999999999999999999999999999999543
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=125.08 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=74.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
-.+||||||+|.++.+.|+.+|++||.|+++.||.|+.||+++|||||+|.+.+.|.+|++--...|.|+...|+.+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3689999999999999999999999999999999999999999999999999999999999777899999999987754
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.42 E-value=4.7e-13 Score=104.96 Aligned_cols=69 Identities=25% Similarity=0.508 Sum_probs=65.9
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEE
Q 006398 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 328 (647)
Q Consensus 259 v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~ 328 (647)
|||+|||+++|+++|.++|.+||.|..+.++.+ .++..+|||||+|.+.++|..|++ ++|..+.|+.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 678999999999999999999998 999999999874
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.4e-12 Score=123.42 Aligned_cols=83 Identities=25% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---CCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~---~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
...+.|+|+|| |+-.- +-||..+|.+||.|..|.|+.| +|||+||+|+++++|.+|.++|||..+.|
T Consensus 94 ~~pkRLhVSNI--PFrFR--------dpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 94 DTPKRLHVSNI--PFRFR--------DPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred CCCceeEeecC--Ccccc--------CccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 45678999999 88766 3899999999999999999665 89999999999999999999999999999
Q ss_pred eEEEEEEeCchhhhcc
Q 006398 627 KMITATFMVPQTYEAK 642 (647)
Q Consensus 627 r~i~v~~~~~~~~~~~ 642 (647)
++|.|..|+.-++.++
T Consensus 164 RkIEVn~ATarV~n~K 179 (376)
T KOG0125|consen 164 RKIEVNNATARVHNKK 179 (376)
T ss_pred eEEEEeccchhhccCC
Confidence 9999999999877654
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.7e-14 Score=124.37 Aligned_cols=78 Identities=27% Similarity=0.488 Sum_probs=73.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
.++.-|||||||+.+||.+|.-+|++||.|++|.+++|+.||+++||||+.|.+.-....|+. |||..|.|+.|.|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 355789999999999999999999999999999999999999999999999999999999996 999999999999953
No 68
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=124.90 Aligned_cols=182 Identities=20% Similarity=0.184 Sum_probs=135.7
Q ss_pred CeEEEecCCCCCCHHHHHHHHHh---c-CCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 257 RTVFAYQICLKADERDVYEFFSR---A-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~---~-G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
-.|.+.+||+++|+.++.+||.+ . |-.+.|.++..++ |+-.|-|||.|...++|+.||..|...|+-+.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46889999999999999999953 2 3556777776655 88999999999999999999998888888887776444
Q ss_pred cchhhhccccc-------ccCCCCCC-----CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCc-E--EEEEeccCCC
Q 006398 333 EAEKNLVQSNS-------SIAGASGG-----GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGT-V--ELVQLPLDET 397 (647)
Q Consensus 333 ~~~~~~~~~~~-------~~~~~~~~-----~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~-v--~~v~i~~~~~ 397 (647)
+...-.+..+. ...+.+.. ...+......||-+++||+.++.++|..+|..|.. | ..|.++.+..
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 32211111000 00000000 11122233679999999999999999999988753 3 3377777888
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 398 GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 398 g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
|+..|-|||+|.+.+.|.+|.+..++..+..+-|.|-.+...
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 999999999999999999999988888788888888776543
No 69
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.40 E-value=8.4e-12 Score=126.34 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=129.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.....|-+.+|||.+|+++|.++|+.++ |..+.++. .+|+..|-|||+|.+.+++.+||+ ++-..+..+-|.|--+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 3356788999999999999999999985 56655544 468889999999999999999998 44466777888887654
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
........ ...
T Consensus 85 ~~e~d~~~---------------------------~~~------------------------------------------ 95 (510)
T KOG4211|consen 85 GAEADWVM---------------------------RPG------------------------------------------ 95 (510)
T ss_pred Cccccccc---------------------------cCC------------------------------------------
Confidence 43310000 000
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEE-EEEee
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVEK 596 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~-v~i~~ 596 (647)
. ......--+|.|.+| |+.++ ++||.+||+..-.|.. |.++.
T Consensus 96 ----------------------g-----~~s~~~d~vVRLRGL--Pfsct--------e~dI~~FFaGL~Iv~~gi~l~~ 138 (510)
T KOG4211|consen 96 ----------------------G-----PNSSANDGVVRLRGL--PFSCT--------EEDIVEFFAGLEIVPDGILLPM 138 (510)
T ss_pred ----------------------C-----CCCCCCCceEEecCC--CccCc--------HHHHHHHhcCCcccccceeeec
Confidence 0 000012338999999 99999 7999999998766665 32322
Q ss_pred C----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccC
Q 006398 597 D----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKF 643 (647)
Q Consensus 597 ~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~ 643 (647)
. +.|-|||+|++.+.|+.|+.. |...|+-+-|.|--+....+..+.
T Consensus 139 d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 139 DQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred cCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhc
Confidence 1 678999999999999999986 888888888888777776665543
No 70
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=3.5e-12 Score=129.64 Aligned_cols=140 Identities=31% Similarity=0.501 Sum_probs=112.4
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
..+|||+|||+.+|+++|.++|..||.|..|.+..++.+|.++|||||+|.+.++|..|+. +++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999999999999999999999999999997 999999999999988643
Q ss_pred --hhhhccc---ccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC
Q 006398 335 --EKNLVQS---NSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 395 (647)
Q Consensus 335 --~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~ 395 (647)
....... .....................+++.+++..++...+...|..+|.+..+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 1111111 000000111122333455788999999999999999999999999977766655
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.38 E-value=2.1e-12 Score=101.24 Aligned_cols=70 Identities=41% Similarity=0.713 Sum_probs=66.8
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 363 l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
|||+|||+.+++++|+++|.+||.|..+.+..+..+...++|||+|.+.++|..|++.|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999998877888899999999999999999999999999999885
No 72
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.38 E-value=6.6e-12 Score=113.85 Aligned_cols=168 Identities=20% Similarity=0.314 Sum_probs=119.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeC-CCCCcccEEEEEecccccHHHHHH-hcCCccC---CceEEEc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL---GQPVMVK 330 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~---g~~i~v~ 330 (647)
-+||||.+||.++...+|..+|..|--.+.+.+.... ...-.+-+|||+|.+.+.|..||. |||..+. +..|.|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4899999999999999999999998766666665432 222345799999999999999996 9999885 5677776
Q ss_pred cCcchhhhcccccccC-----------------------------C-----CCC--------------------------
Q 006398 331 PSEAEKNLVQSNSSIA-----------------------------G-----ASG-------------------------- 350 (647)
Q Consensus 331 ~~~~~~~~~~~~~~~~-----------------------------~-----~~~-------------------------- 350 (647)
.+.............+ . ..+
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 5542221111000000 0 000
Q ss_pred -------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 006398 351 -------GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ 423 (647)
Q Consensus 351 -------~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g 423 (647)
.+.......+.+|||.||.+.++|++|+.+|..|-....++|.. ..| -..|||+|...+.|..||..|+|
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHhhc
Confidence 00001122367899999999999999999999997655555533 233 34799999999999999999998
Q ss_pred cee
Q 006398 424 LEI 426 (647)
Q Consensus 424 ~~~ 426 (647)
..|
T Consensus 271 ~~~ 273 (284)
T KOG1457|consen 271 NLL 273 (284)
T ss_pred cee
Confidence 766
No 73
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.38 E-value=1.9e-11 Score=127.54 Aligned_cols=80 Identities=11% Similarity=0.030 Sum_probs=64.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
.....+|||.+||..+++.++..+|.....|++...+...-++.-++-|||.|...+++..|+. .+.+.++-+.|.|..
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 3345799999999999999999999988888874334444468899999999999999999887 667777777888854
Q ss_pred C
Q 006398 332 S 332 (647)
Q Consensus 332 ~ 332 (647)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 3
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=3.2e-12 Score=95.17 Aligned_cols=56 Identities=30% Similarity=0.541 Sum_probs=52.0
Q ss_pred HHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 579 VEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 579 l~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
|.++|++||.|..|.+.....++|||+|.++++|..|+..|||..|+|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997766799999999999999999999999999999999986
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=2.1e-12 Score=123.50 Aligned_cols=76 Identities=36% Similarity=0.555 Sum_probs=70.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.+.++|..||.|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998864 57999999999999999999999999999999988653
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=1.9e-12 Score=101.49 Aligned_cols=69 Identities=32% Similarity=0.550 Sum_probs=63.3
Q ss_pred EEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEE
Q 006398 259 VFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 328 (647)
Q Consensus 259 v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~ 328 (647)
|||+|||+.+++++|.++|..||.|..+.+..++. |..+|+|||+|.+.++|..|+. +++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 8999999999999999999998 677999998874
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.6e-12 Score=105.42 Aligned_cols=79 Identities=27% Similarity=0.500 Sum_probs=75.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
..+++||||||.+.++|++|.++|+.+|+|..|.|-.|+++...=|||||+|.+.++|..||. ++|+.|..++|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 456899999999999999999999999999999999999999999999999999999999998 9999999999999654
No 78
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.32 E-value=1e-11 Score=97.32 Aligned_cols=70 Identities=43% Similarity=0.716 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 363 LYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 363 l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
|+|+|||+.+++++|.++|+.||.|..+.+...+.+..+|+|||+|.+.++|..|++.+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999986688999999999999999999999999999999874
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.9e-12 Score=110.76 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=69.7
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEE
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 631 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v 631 (647)
.+.|||+|| +..++ ..+|..+|..||.|..|-|..++.|||||+|+++-+|+-|+..|+|..|+|..|+|
T Consensus 10 ~~kVYVGnL--~~~a~--------k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNL--GSRAT--------KRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CceEEeccC--CCCcc--------hHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 568999999 66666 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCch
Q 006398 632 TFMVPQ 637 (647)
Q Consensus 632 ~~~~~~ 637 (647)
++-+-.
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 986543
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.8e-12 Score=110.81 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=68.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
.++||||||+..+++.+|..+|..||+|..|+|-..+ .|||||+|.++-+|..|+. |+|..|.|..|.|..+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5799999999999999999999999999999999755 5899999999999999996 999999999999987653
No 81
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.3e-12 Score=116.47 Aligned_cols=80 Identities=29% Similarity=0.311 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+..+|.|.||+.++++.+|.++|.+||.|..|.|.+|+.||.++|||||.|.+.++|.+||. |||.-+..--|.|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999997 99999999999998876
Q ss_pred c
Q 006398 334 A 334 (647)
Q Consensus 334 ~ 334 (647)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 5
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.30 E-value=3.9e-12 Score=114.00 Aligned_cols=88 Identities=34% Similarity=0.521 Sum_probs=81.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 354 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 354 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
.+.......|.|.||.+-++.++|..+|++||.|-.|.|+.+ -++.++|||||.|....+|+.|+++|+|..|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344556789999999999999999999999999999999999 4999999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 006398 433 VSAVTDQSG 441 (647)
Q Consensus 433 v~~~~~~~~ 441 (647)
|++|.....
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999987654
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.8e-12 Score=106.06 Aligned_cols=86 Identities=27% Similarity=0.394 Sum_probs=79.3
Q ss_pred CCCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEE
Q 006398 250 VDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 328 (647)
Q Consensus 250 ~~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~ 328 (647)
+........|||.++...+|+++|.+.|..||+|.++.+-.|..||..+|||+|+|.+.++|+.||. +||..|+|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3445566899999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred EccCcch
Q 006398 329 VKPSEAE 335 (647)
Q Consensus 329 v~~~~~~ 335 (647)
|.++-..
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9887543
No 84
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.2e-11 Score=117.37 Aligned_cols=87 Identities=18% Similarity=0.337 Sum_probs=78.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+-+||||+.|+++++|..|+..|+.||+|+.|.|+.++.||+++|||||+|.+.-+...|.+ .+|.+|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999999664
Q ss_pred cchhhhcc
Q 006398 333 EAEKNLVQ 340 (647)
Q Consensus 333 ~~~~~~~~ 340 (647)
-......|
T Consensus 179 RgRTvkgW 186 (335)
T KOG0113|consen 179 RGRTVKGW 186 (335)
T ss_pred cccccccc
Confidence 43333333
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=8.2e-12 Score=117.26 Aligned_cols=77 Identities=30% Similarity=0.455 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
...+|||+||++.+|+++|++||+.||.|.+|.|+.+. ...|||||+|.+++.|..||.|+|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 34799999999999999999999999999999999885 456899999999999999999999999999999987653
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=2.3e-11 Score=96.80 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=71.5
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEE--eeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV--EKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i--~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
.++.|||.|| |+..| .+++.++|.+||.|..|.| .+.-+|.|||-|+++.+|.+|+.+|+|..+.++.
T Consensus 17 vnriLyirNL--p~~IT--------seemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry 86 (124)
T KOG0114|consen 17 VNRILYIRNL--PFKIT--------SEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY 86 (124)
T ss_pred hheeEEEecC--Ccccc--------HHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCce
Confidence 4668999999 88777 6999999999999999998 5557899999999999999999999999999999
Q ss_pred EEEEEeCchhh
Q 006398 629 ITATFMVPQTY 639 (647)
Q Consensus 629 i~v~~~~~~~~ 639 (647)
|.|-|..+...
T Consensus 87 l~vlyyq~~~~ 97 (124)
T KOG0114|consen 87 LVVLYYQPEDA 97 (124)
T ss_pred EEEEecCHHHH
Confidence 99999877654
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.25 E-value=1.1e-11 Score=111.09 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
.-..|.|-||.+-+|.++|..+|++||.|-+|.|..|..|+.++|||||.|....+|+.||+ |+|.+|+|+.|.|+.+.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34689999999999999999999999999999999999999999999999999999999997 99999999999998775
Q ss_pred ch
Q 006398 334 AE 335 (647)
Q Consensus 334 ~~ 335 (647)
..
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.25 E-value=2e-11 Score=122.71 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=68.9
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEeccc--ccHHHHHH-hcCCccCCceEEEcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDV--MSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~--~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
...+||||||++.+|+++|..+|..||.|..|.|+ ..|| +|||||+|.+. .++.+||. |||..++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 44799999999999999999999999999999999 4566 99999999998 67899997 999999999999987
Q ss_pred Cc
Q 006398 332 SE 333 (647)
Q Consensus 332 ~~ 333 (647)
+.
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 75
No 89
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=1.3e-10 Score=119.87 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=114.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
.....+|+|-|||..+++++|..+|+.||.|..|+.. -...|.+||+|.++-+|+.|+. |++..|.|+.|+...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 4566899999999999999999999999999997664 4467899999999999999996 999999999998432
Q ss_pred CcchhhhcccccccCCC---CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEe
Q 006398 332 SEAEKNLVQSNSSIAGA---SGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 408 (647)
Q Consensus 332 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef 408 (647)
........+........ ......+..-+.-.++ +.|++......+...|.-+|.+.. .. ++.-.-..|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc----ccchhhhhhhhh
Confidence 22111111111100000 0000111111112222 238888777666666666776544 21 111122578889
Q ss_pred CCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 409 ARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 409 ~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.+..++..++-.+ |+.+.+....++++..
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceEEecCC
Confidence 8888886665534 7888888888888765
No 90
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=4.1e-11 Score=115.10 Aligned_cols=84 Identities=35% Similarity=0.521 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....++|+|.|||+..-+.||+.+|++||.|..|.|+.+.-| +|||+||.|.+.++|.+|-+.|||..+.|++|.|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345689999999999999999999999999999999988666 6999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
+....
T Consensus 172 TarV~ 176 (376)
T KOG0125|consen 172 TARVH 176 (376)
T ss_pred chhhc
Confidence 88643
No 91
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.9e-11 Score=101.15 Aligned_cols=84 Identities=27% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
..+++|||+||.+.++|++|+++|+++|.|..|.+-.+. +-.+-|||||+|.+.++|..||..++|..++.+.|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 347899999999999999999999999999999988773 5556899999999999999999999999999999999996
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
.-...
T Consensus 114 ~GF~e 118 (153)
T KOG0121|consen 114 AGFVE 118 (153)
T ss_pred ccchh
Confidence 55443
No 92
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=4.1e-11 Score=95.35 Aligned_cols=80 Identities=20% Similarity=0.421 Sum_probs=72.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
-.+.|||.|||+.+|.+++.++|..||.|..|+|-..+. .+|.|||.|.+..+|.+|+. |+|..+.++.+.|.+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 347899999999999999999999999999999976554 68999999999999999997 99999999999998776
Q ss_pred chhh
Q 006398 334 AEKN 337 (647)
Q Consensus 334 ~~~~ 337 (647)
+...
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 5544
No 93
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.22 E-value=5.8e-11 Score=113.64 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=72.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999988742 46899999999999999995 9999999999999998765
Q ss_pred CC
Q 006398 440 SG 441 (647)
Q Consensus 440 ~~ 441 (647)
..
T Consensus 81 ~~ 82 (260)
T PLN03120 81 QL 82 (260)
T ss_pred CC
Confidence 43
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=7e-11 Score=112.13 Aligned_cols=85 Identities=27% Similarity=0.541 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
...+.++|||.-|+..++|..|+..|+.||.|..|.|+.+ -+|.++|||||+|...-+...|.+..+|+.|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3367899999999999999999999999999999999999 599999999999999999999999999999999999999
Q ss_pred EeecCC
Q 006398 435 AVTDQS 440 (647)
Q Consensus 435 ~~~~~~ 440 (647)
+--..+
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 855543
No 95
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.8e-11 Score=110.19 Aligned_cols=82 Identities=33% Similarity=0.464 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....+|-|.||+..+++.+|.++|.+||.|..|.|.++ .+|.++|||||.|.+.++|.+||..|||+-++.-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999 59999999999999999999999999999999999999998
Q ss_pred ecC
Q 006398 437 TDQ 439 (647)
Q Consensus 437 ~~~ 439 (647)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=4.6e-11 Score=99.70 Aligned_cols=84 Identities=24% Similarity=0.465 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...+.|||.++...+++++|.+.|..||.|.+|.|..+ .+|..+|||+|+|.+.+.|++|+..|||..|.|+.|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45789999999999999999999999999999999888 69999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
..+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 87654
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=4.1e-12 Score=111.65 Aligned_cols=82 Identities=28% Similarity=0.541 Sum_probs=77.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
+.=|||+|||+.+||.+|..+|++||.|..|.|+++ .||.++||||+.|.+.-+...|+.-|||+.|.|+.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 456999999999999999999999999999999999 6999999999999999999999999999999999999999877
Q ss_pred CCC
Q 006398 439 QSG 441 (647)
Q Consensus 439 ~~~ 441 (647)
...
T Consensus 115 Yk~ 117 (219)
T KOG0126|consen 115 YKK 117 (219)
T ss_pred ccC
Confidence 654
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=9.8e-11 Score=91.71 Aligned_cols=71 Identities=34% Similarity=0.528 Sum_probs=66.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
+|||+|||..++.++|.++|.+||.|..+.++.+. +..+|+|||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6789999999999999999997 99999999998873
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=2.1e-09 Score=114.43 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.-++|||||+|+..+++.+|..+|+.||.|..|.++ ..+|+|||.+....+|.+||+ |....+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 345899999999999999999999999999999998 467899999999999999997 9999999999999887
Q ss_pred cch
Q 006398 333 EAE 335 (647)
Q Consensus 333 ~~~ 335 (647)
...
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 543
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.4e-11 Score=108.91 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=78.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
..++||||+|...+|+.-|...|-+||.|.+|.+..|..+++.+|||||+|.-.|+|.+||. ||+..|.|+.|.|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999999999999999999999999999997 99999999999999987
Q ss_pred chhh
Q 006398 334 AEKN 337 (647)
Q Consensus 334 ~~~~ 337 (647)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 6543
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.14 E-value=9.6e-10 Score=115.14 Aligned_cols=81 Identities=9% Similarity=0.070 Sum_probs=67.5
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEE-EEEeeC----CCccEEEEeCChHHHHHHHHHHcCce
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVEKD----SAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~-v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
+..+.||||..| |.+++ +.++.++|..--.|+. |.|... -.+.|||.|.+++++..|...-+-..
T Consensus 431 ~~ag~~lyv~~l--P~~t~--------~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y 500 (944)
T KOG4307|consen 431 GGAGGALYVFQL--PVMTP--------IVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFY 500 (944)
T ss_pred CCccceEEeccC--Ccccc--------ccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccc
Confidence 346779999999 88887 6899999998666666 666333 35789999999999999999999999
Q ss_pred eCCeEEEEEEeCchhh
Q 006398 624 FAGKMITATFMVPQTY 639 (647)
Q Consensus 624 ~~gr~i~v~~~~~~~~ 639 (647)
++.+.|+|.-+....+
T Consensus 501 ~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 501 PGHRIIRVDSIADYAM 516 (944)
T ss_pred cCceEEEeechhhHHH
Confidence 9999999998877766
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=3.4e-10 Score=106.49 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
...+|+|+||++.+++++|+++|+.||.|..|.|+.+ +...++|||+|.+.+.|..|+ +|+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 3589999999999999999999999999999999988 445689999999999999999 5999999999999999877
Q ss_pred CCC
Q 006398 439 QSG 441 (647)
Q Consensus 439 ~~~ 441 (647)
+..
T Consensus 81 y~~ 83 (243)
T PLN03121 81 YED 83 (243)
T ss_pred ccc
Confidence 654
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.5e-10 Score=90.34 Aligned_cols=69 Identities=33% Similarity=0.572 Sum_probs=65.4
Q ss_pred EecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEE
Q 006398 261 AYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 329 (647)
Q Consensus 261 v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v 329 (647)
|+|||..+++++|+.+|.+||.|..+.+..++.++.++|+|||+|.+.++|..|+. +++..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 57999999999999999999999999999988889999999999999999999997 9999999999887
No 104
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=3.6e-10 Score=88.47 Aligned_cols=71 Identities=41% Similarity=0.761 Sum_probs=66.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 362 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
+|+|.|||..++.++|.++|.+||.|..+.+.... +.+.|+|||+|.+.+.|..|+..+++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999888776 667899999999999999999999999999999886
No 105
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.3e-10 Score=115.20 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCH--HHHHHHHHHcCCceecCeEEEEEEe
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL--EDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~--~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...+|||+||++.+++++|..+|..||.|..|.|++ .+| +|||||+|.+. ..+.+||..|||..+.|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 357899999999999999999999999999999994 466 89999999987 7899999999999999999999999
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
.+..
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 8854
No 106
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.3e-10 Score=107.16 Aligned_cols=80 Identities=30% Similarity=0.478 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||++|+|.+..+.|++.|++||.|....|+.+ .+|+++||+||.|.+.+.|..|++-.+ -.|+|+...|++|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchh
Confidence 34688999999999999999999999999999999988 599999999999999999999998665 5799999999887
Q ss_pred ec
Q 006398 437 TD 438 (647)
Q Consensus 437 ~~ 438 (647)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 76
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.05 E-value=1.2e-09 Score=85.93 Aligned_cols=74 Identities=42% Similarity=0.671 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 362 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
+|+|.|||..+++++|.++|..+|.|..+.+.....+...|+|||+|.+.+.|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999876556789999999999999999999999999999999864
No 108
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.03 E-value=4.2e-10 Score=117.08 Aligned_cols=80 Identities=31% Similarity=0.503 Sum_probs=76.7
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
+.|||||||+.+++++|..+|...|.|.+++++.|+.||..+||||++|.+.++|..|++ |||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999997 9999999999999887644
Q ss_pred h
Q 006398 336 K 336 (647)
Q Consensus 336 ~ 336 (647)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.03 E-value=1.1e-09 Score=86.12 Aligned_cols=72 Identities=38% Similarity=0.632 Sum_probs=66.7
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
+|+|+|||+.+++++|..+|..||.|..+.+..+..+ ...|+|||+|.+.++|..|+. +++..+.|..|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999987764 678999999999999999997 99999999999885
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.03 E-value=8.9e-10 Score=85.84 Aligned_cols=70 Identities=47% Similarity=0.739 Sum_probs=64.6
Q ss_pred EcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 365 VGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 365 v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
|.|||..+++++|+++|..||.|..+.+.... ++.++|+|||+|.+.+.|..|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999988874 67889999999999999999999999999999998873
No 111
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.03 E-value=2.6e-09 Score=108.42 Aligned_cols=79 Identities=39% Similarity=0.698 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
..+|||+|||+.+++++|.++|..||.|..|.+..+ .++.++|||||+|.+.++|..|+..++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 689999999999999999999999999999999998 5899999999999999999999999999999999999999764
No 112
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.4e-10 Score=103.47 Aligned_cols=84 Identities=39% Similarity=0.670 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||++|...+++..|...|-+||.|..|.++.+ .+++.+||+||+|.-.++|.+||.-||+..++|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999 68899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
.+...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88654
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3.1e-11 Score=129.71 Aligned_cols=237 Identities=18% Similarity=0.169 Sum_probs=185.7
Q ss_pred CeEEEecCCCCCCHH-HHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADER-DVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~-~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~~ 335 (647)
...++.++.+..... ..+..|..+|.|+.|.+......-....++++++.....++.|....+..+.++.+.|..+.+.
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCch
Confidence 466777777776655 5678899999999999887333222333899999999999999999999999999988777655
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHH
Q 006398 336 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDA 414 (647)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A 414 (647)
......... ........++||.||+..+.+.+|...|.++|.+..+++... ..+..+|+|||+|..++++
T Consensus 652 ~~~~~~kvs---------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~ 722 (881)
T KOG0128|consen 652 EKEENFKVS---------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHA 722 (881)
T ss_pred hhhhccCcC---------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCch
Confidence 422111100 000122457899999999999999999999999988877743 4777899999999999999
Q ss_pred HHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCccc
Q 006398 415 RNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVN 494 (647)
Q Consensus 415 ~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (647)
.+|+....+..++ +.
T Consensus 723 ~aaV~f~d~~~~g-----------K~------------------------------------------------------ 737 (881)
T KOG0128|consen 723 GAAVAFRDSCFFG-----------KI------------------------------------------------------ 737 (881)
T ss_pred hhhhhhhhhhhhh-----------hh------------------------------------------------------
Confidence 9999877654332 10
Q ss_pred CCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhh
Q 006398 495 STALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMD 574 (647)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~ 574 (647)
.|+|.|+ |+..|
T Consensus 738 -----------------------------------------------------------~v~i~g~--pf~gt------- 749 (881)
T KOG0128|consen 738 -----------------------------------------------------------SVAISGP--PFQGT------- 749 (881)
T ss_pred -----------------------------------------------------------hhheeCC--CCCCc-------
Confidence 5778899 88877
Q ss_pred HHHHHHHHhhhcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 575 IKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 575 ~~~dl~~~F~~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
.+.|..+|..+|+++.+.++.. ++|.|||.|.+..+|.+++..+.+..+.-+.+.|+.-.|
T Consensus 750 -~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 750 -KEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -hHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5899999999999999876432 689999999999999999999999999888888877544
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=2.1e-09 Score=79.82 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=51.1
Q ss_pred HHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 377 l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
|.++|++||.|..|.+.... .++|||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998763 489999999999999999999999999999999986
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.98 E-value=1.6e-09 Score=84.48 Aligned_cols=58 Identities=29% Similarity=0.564 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCeEEEE-E--ee-----CCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEE
Q 006398 575 IKEDVEGECSKFGKLKHIF-V--EK-----DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 632 (647)
Q Consensus 575 ~~~dl~~~F~~fG~V~~v~-i--~~-----~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~ 632 (647)
|.+.+.++|..||.|..|. | ++ .++|+|||+|.+.++|..|+..|||..|.|++|.++
T Consensus 5 l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 5 FEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred HHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3455555555999999984 3 22 358999999999999999999999999999999873
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=7.8e-09 Score=105.95 Aligned_cols=163 Identities=21% Similarity=0.181 Sum_probs=111.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCC---CCCccc---EEEEEecccccHHHHHH-hcCCccCCce
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN---SRRSKG---VGYVEFYDVMSVPMAIA-LSGQPLLGQP 326 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~---tg~~~g---~afV~f~~~~~a~~al~-~~g~~~~g~~ 326 (647)
.-+++||||+||++|+|+.|...|..||.+.- ......+ --..+| |+|+.|.+...+...|. ..- .-.+-.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 34689999999999999999999999998763 3331111 112455 99999999888877763 211 111112
Q ss_pred EEEccCcchhh----hcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhc-cCCcEEEEEeccC-CCCCc
Q 006398 327 VMVKPSEAEKN----LVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFE-PFGTVELVQLPLD-ETGHC 400 (647)
Q Consensus 327 i~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~-~~G~v~~v~i~~~-~~g~~ 400 (647)
++|........ ..|...... .-........+.++|||++||-.++.++|..+|+ -||.|..+-|-.+ +..-+
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~--fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSD--FVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred EEEecCcccccceeEEeeEeccch--hhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 22211111111 011111000 0001223346689999999999999999999999 7999999999998 67788
Q ss_pred ceEEEEEeCCHHHHHHHHHH
Q 006398 401 KGFGFVQFARLEDARNALNL 420 (647)
Q Consensus 401 ~g~afVef~~~~~A~~Al~~ 420 (647)
+|-|=|.|.+...-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 99999999999999999974
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.96 E-value=2e-09 Score=112.07 Aligned_cols=80 Identities=34% Similarity=0.571 Sum_probs=76.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
..|||+|||+.+++++|..+|...|.|..+.++.| .+|.++||+|++|.+.+.|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999 69999999999999999999999999999999999999998665
Q ss_pred C
Q 006398 440 S 440 (647)
Q Consensus 440 ~ 440 (647)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 118
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=2.8e-10 Score=103.21 Aligned_cols=148 Identities=28% Similarity=0.386 Sum_probs=123.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
.++|||+||-..++++-|.++|-+.|+|..|.|..++. ++.+ ||||.|.+.-....|++ +||..+.+..+.|++-..
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 37999999999999999999999999999999988776 5566 99999999999999998 999999999998864310
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 414 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A 414 (647)
.. . .-|...++++.+..+|+..|.+..+.+..+..|....++|+.+.-....
T Consensus 87 ~s-----------------------h-----apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 87 NS-----------------------H-----APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred CC-----------------------c-----chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 00 0 0145568899999999999999999999887788889999999988888
Q ss_pred HHHHHHcCCceecCeEEEE
Q 006398 415 RNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 415 ~~Al~~l~g~~~~g~~i~v 433 (647)
..++....++...-+++.+
T Consensus 139 P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 139 PFALDLYQGLELFQKKVTI 157 (267)
T ss_pred cHHhhhhcccCcCCCCccc
Confidence 8888887776655544443
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=3.9e-09 Score=82.29 Aligned_cols=60 Identities=25% Similarity=0.386 Sum_probs=54.3
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeeCCC--CCcccEEEEEecccccHHHHHH-hcCCccCCceEEE
Q 006398 270 ERDVYEFFS----RAGKVRDVR-LIMDRNS--RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 329 (647)
Q Consensus 270 ~~~l~~~f~----~~G~i~~v~-~~~~~~t--g~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v 329 (647)
+++|.++|. +||.|..|. ++.+..+ +.++|||||+|.+.++|..|+. |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999996 7777766 8999999999999999999997 9999999999976
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=2.1e-10 Score=123.50 Aligned_cols=150 Identities=23% Similarity=0.320 Sum_probs=131.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
+...++||.||++.+.+.+|...|..+|.+..+++....+.+..+|+|||.|..++++.+|++++...+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45578999999999999999999999999999988877788999999999999999999999866555544
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLED 413 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~ 413 (647)
...|+|.|+|+..|.+.++.+|.++|.+..+.++....|.++|.|||.|.+..+
T Consensus 736 --------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~ 789 (881)
T KOG0128|consen 736 --------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEAD 789 (881)
T ss_pred --------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcch
Confidence 245899999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeec
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
+..++....++.+.-..+.|..+.+
T Consensus 790 ~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 790 ASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhcccchhhhhhhcCccccccCC
Confidence 9999988887777666666666544
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.83 E-value=4.4e-09 Score=99.44 Aligned_cols=89 Identities=28% Similarity=0.589 Sum_probs=76.3
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC------CCccEEEEeCChHHHHHHHHHHcCc
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD------SAGFVYLRFENTQSAFAAQRALHGR 622 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~------~~G~afV~F~~~e~A~~A~~~lnG~ 622 (647)
..++++|.+.||+.+.+. .++|++++..+|.+||.|..|.|.-. -.--.||+|..+++|.+|+-.|||+
T Consensus 278 ~~ptkvlllrnmVg~gev-----d~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR 352 (378)
T KOG1996|consen 278 KCPTKVLLLRNMVGAGEV-----DEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR 352 (378)
T ss_pred hcchHHHHhhhhcCcccc-----cHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc
Confidence 678899999999887654 35778999999999999999877221 1234799999999999999999999
Q ss_pred eeCCeEEEEEEeCchhhhcc
Q 006398 623 WFAGKMITATFMVPQTYEAK 642 (647)
Q Consensus 623 ~~~gr~i~v~~~~~~~~~~~ 642 (647)
+|+|+.+...|+....|.+.
T Consensus 353 yFGGr~v~A~Fyn~ekfs~~ 372 (378)
T KOG1996|consen 353 YFGGRVVSACFYNLEKFSNL 372 (378)
T ss_pred eecceeeeheeccHHhhhhh
Confidence 99999999999999999753
No 122
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.82 E-value=2.2e-09 Score=105.48 Aligned_cols=214 Identities=16% Similarity=0.159 Sum_probs=124.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC----CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE----TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~----~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
..|-|.||.+.++.++++.+|...|.|..+.|+... .......|||.|.+...+..|..+-| +.|-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeeeeEEEEec
Confidence 389999999999999999999999999999887742 23346789999999999998877555 5555555555443
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006398 437 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 516 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (647)
.+... +. ..++..++..+...++.+..| .|++.+.+
T Consensus 87 ~~~~~--------------------p~-----r~af~~l~~~navprll~pdg-------~Lp~~~~l------------ 122 (479)
T KOG4676|consen 87 GDEVI--------------------PD-----RFAFVELADQNAVPRLLPPDG-------VLPGDRPL------------ 122 (479)
T ss_pred CCCCC--------------------cc-----HHHHHhcCcccccccccCCCC-------ccCCCCcc------------
Confidence 22211 00 113333433332211111100 11111100
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEE-e
Q 006398 517 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFV-E 595 (647)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i-~ 595 (647)
+.++..+..+...+.+.+.+... ....-..+|+|.+|.+ .. +..++.+.|..+|.|.+..+ -
T Consensus 123 ----t~~nh~p~ailktP~Lp~~~~A~---kleeirRt~~v~sl~~--~~--------~l~e~~e~f~r~Gev~ya~~as 185 (479)
T KOG4676|consen 123 ----TKINHSPNAILKTPELPPQAAAK---KLEEIRRTREVQSLIS--AA--------ILPESGESFERKGEVSYAHTAS 185 (479)
T ss_pred ----ccccCCccceecCCCCChHhhhh---hhHHHHhhhhhhcchh--hh--------cchhhhhhhhhcchhhhhhhhc
Confidence 00000000000001111111100 1112236899999933 22 26899999999999998776 2
Q ss_pred eCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 596 KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 596 ~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
+....+|.|+|....+...|+. ++|+.|.-...++....|+
T Consensus 186 k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 186 KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 3344567799999999998887 5888887555555554443
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=3.5e-09 Score=114.66 Aligned_cols=162 Identities=19% Similarity=0.269 Sum_probs=136.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
.....+||+|||+..+++.+|+..|..+|.|..|.|-.-.. +..--||||.|.+...+..|.. +.+..|....+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45678999999999999999999999999999999876543 4556699999999999999885 888887766666654
Q ss_pred CcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCH
Q 006398 332 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 411 (647)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~ 411 (647)
... ....++.+++++|..++....|...|..||.|..|.+-.. .-|+||.|.+.
T Consensus 448 G~~---------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~ 501 (975)
T KOG0112|consen 448 GQP---------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESP 501 (975)
T ss_pred ccc---------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccC
Confidence 321 1244789999999999999999999999999999877554 56999999999
Q ss_pred HHHHHHHHHcCCceecC--eEEEEEEeecCCC
Q 006398 412 EDARNALNLNGQLEIVG--RAIKVSAVTDQSG 441 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g--~~i~v~~~~~~~~ 441 (647)
..|+.|+..|-|+.|+| +.+.|.|+.+...
T Consensus 502 ~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 502 PAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 99999999999999986 6799999887654
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.77 E-value=7.8e-08 Score=102.71 Aligned_cols=77 Identities=29% Similarity=0.535 Sum_probs=72.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
+++|||++|+..+++++|.++|+.||.|..|.++.. +|+|||.+....+|.+||+.|.+..+.++.|+|.|+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 689999999999999999999999999999999875 899999999999999999999999999999999998776
Q ss_pred CC
Q 006398 440 SG 441 (647)
Q Consensus 440 ~~ 441 (647)
-.
T Consensus 496 G~ 497 (894)
T KOG0132|consen 496 GP 497 (894)
T ss_pred Cc
Confidence 54
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=1.2e-08 Score=92.48 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhc-CCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRA-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~-G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
..--+||..||..+-+.+|..+|.+| |.|..+++-+++.||.++|||||+|.+.+.|.-|.+ ||+..|+|+-|.|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34578999999999999999999888 788899998999999999999999999999999997 9999999999998765
Q ss_pred cch
Q 006398 333 EAE 335 (647)
Q Consensus 333 ~~~ 335 (647)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 443
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.76 E-value=5.3e-09 Score=104.12 Aligned_cols=177 Identities=27% Similarity=0.310 Sum_probs=139.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCC-ccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQ-PLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~-~~~g~~i~v~~~~ 333 (647)
...++|++++...+.+.++..++..+|.+..+.+........++|+++|.|...+.+..||++.+. .+.+..+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 457899999999999999999999999888888888777889999999999999999999997775 4445444432222
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
....... ... ...........++|.+|++.++.++|+..|..+|.|..+.++.. .++...|++||+|....
T Consensus 167 ~~~~~~~-n~~-------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRPK-NKL-------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccccc-chh-------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 1110000 000 00011122344559999999999999999999999999999988 68899999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
.+..|+.. +...+.+..+.|.+..+..
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999987 8888999999999977654
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-08 Score=98.24 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
..++.+.|||..|.+-++.++|.-+|+.||.|..|.|+.+ ++|.+..||||+|.+.+++.+|.-.|+++.|+.+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4577899999999999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred EeecCC
Q 006398 435 AVTDQS 440 (647)
Q Consensus 435 ~~~~~~ 440 (647)
|+....
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 976544
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=8.4e-09 Score=111.75 Aligned_cols=159 Identities=19% Similarity=0.324 Sum_probs=127.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
..+.+||++||+..+++.+|...|..+|.|..|.|-...-+....|+||.|.+...+..|+..+.+..|....+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 44789999999999999999999999999999888666444446799999999999999988888776655444433311
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
.+
T Consensus 450 ~k------------------------------------------------------------------------------ 451 (975)
T KOG0112|consen 450 PK------------------------------------------------------------------------------ 451 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 597 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~ 597 (647)
..+++-|++++| +.+.- ..-|..+|..||.|..|.+.+
T Consensus 452 -------------------------------st~ttr~~sggl--g~w~p--------~~~l~r~fd~fGpir~Idy~h- 489 (975)
T KOG0112|consen 452 -------------------------------STPTTRLQSGGL--GPWSP--------VSRLNREFDRFGPIRIIDYRH- 489 (975)
T ss_pred -------------------------------cccceeeccCCC--CCCCh--------HHHHHHHhhccCcceeeeccc-
Confidence 124557888888 44433 688999999999999998855
Q ss_pred CCccEEEEeCChHHHHHHHHHHcCceeCC--eEEEEEEeCc
Q 006398 598 SAGFVYLRFENTQSAFAAQRALHGRWFAG--KMITATFMVP 636 (647)
Q Consensus 598 ~~G~afV~F~~~e~A~~A~~~lnG~~~~g--r~i~v~~~~~ 636 (647)
+.-||||.|.+...|+.|+..|-|..|+| +.|.|.||.+
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 56799999999999999999999999974 6699999654
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5.2e-07 Score=92.84 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=106.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC--C--CCCcce---EEEEEeCCHHHHHHHHHHcCCceecCeE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD--E--TGHCKG---FGFVQFARLEDARNALNLNGQLEIVGRA 430 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~--~--~g~~~g---~afVef~~~~~A~~Al~~l~g~~~~g~~ 430 (647)
.-++.|||++||+.++|+.|...|..||.+ .|.++.. . .-.++| |+|+.|.+...+...|..+.- .-.+--
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 346889999999999999999999999985 3445522 1 112456 999999999988877765431 111122
Q ss_pred EEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccc
Q 006398 431 IKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAAS 510 (647)
Q Consensus 431 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (647)
+.|.-...+..... ..++.......++.
T Consensus 335 f~vss~~~k~k~VQ---------------IrPW~laDs~fv~d------------------------------------- 362 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQ---------------IRPWVLADSDFVLD------------------------------------- 362 (520)
T ss_pred EEEecCccccccee---------------EEeeEeccchhhhc-------------------------------------
Confidence 33333222221000 00110000000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhh-hcCCe
Q 006398 511 AVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECS-KFGKL 589 (647)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~-~fG~V 589 (647)
....-.|.++|||++| |-.++ .++|..+|. -||.|
T Consensus 363 ----------------------------------~sq~lDprrTVFVGgv--prpl~--------A~eLA~imd~lyGgV 398 (520)
T KOG0129|consen 363 ----------------------------------HNQPIDPRRTVFVGGL--PRPLT--------AEELAMIMEDLFGGV 398 (520)
T ss_pred ----------------------------------cCcccCccceEEecCC--CCcch--------HHHHHHHHHHhcCce
Confidence 0001237889999999 66666 789999998 69999
Q ss_pred EEEEEee-----CCCccEEEEeCChHHHHHHHHH
Q 006398 590 KHIFVEK-----DSAGFVYLRFENTQSAFAAQRA 618 (647)
Q Consensus 590 ~~v~i~~-----~~~G~afV~F~~~e~A~~A~~~ 618 (647)
+.+-|+. .++|-|-|+|.+.++=.+||.+
T Consensus 399 ~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 399 LYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9998854 3789999999999999999875
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.64 E-value=9.3e-08 Score=86.83 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC-CcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPF-GTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~-G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|..+|..+.+.+|...|.++ |.|..+.+-++ .||.++|||||+|.+.+.|.-|.+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 446779999999999999999999988 67788888777 6999999999999999999999999999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7765
No 131
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6.4e-08 Score=94.05 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=76.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHH-HhcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI-ALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al-~~~g~~~~g~~i~v~~~ 332 (647)
.+.+.|||.-|.+.+|.++|.-+|+.||+|.+|.+|+|..||.+..||||+|.+.+++++|. .|++..|..+.|-|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 35579999999999999999999999999999999999999999999999999999999998 59999999999999876
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
..-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 5433
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.60 E-value=1.2e-07 Score=97.46 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=74.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.-.+.|||.+|...+-..+|+.+|++||.|+...++.+-.+.-.++|+||+|.+.++|.+||+ |+.+.|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 345889999999999999999999999999999999998888899999999999999999998 9999999999999765
Q ss_pred c
Q 006398 333 E 333 (647)
Q Consensus 333 ~ 333 (647)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.55 E-value=3e-07 Score=94.54 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCce
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
...+++|+|.+|.+. +- ..||..||++||.|+-.+|+.+ ..+|+||++.+.++|.+||..||-..
T Consensus 402 s~~gRNlWVSGLSst--TR--------AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE 471 (940)
T KOG4661|consen 402 STLGRNLWVSGLSST--TR--------ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE 471 (940)
T ss_pred cccccceeeeccccc--hh--------hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh
Confidence 346789999999433 22 5799999999999999999776 35789999999999999999999999
Q ss_pred eCCeEEEEEEeC
Q 006398 624 FAGKMITATFMV 635 (647)
Q Consensus 624 ~~gr~i~v~~~~ 635 (647)
|.|+.|.|+-+-
T Consensus 472 LHGrmISVEkaK 483 (940)
T KOG4661|consen 472 LHGRMISVEKAK 483 (940)
T ss_pred hcceeeeeeecc
Confidence 999999998764
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=1.9e-07 Score=90.99 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=69.0
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH--hcCCccCCceEEE
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA--LSGQPLLGQPVMV 329 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~--~~g~~~~g~~i~v 329 (647)
..+.-.+|||++|-..+++.+|+++|.+||.|..|.+.. .+|+|||+|.+.+.|+.|++ ++...|.|..|+|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 344568999999988999999999999999999999985 45699999999999999995 8889999999999
Q ss_pred ccCcc
Q 006398 330 KPSEA 334 (647)
Q Consensus 330 ~~~~~ 334 (647)
.+..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 98765
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=4.6e-07 Score=88.47 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=72.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHH-HcCCceecCeE
Q 006398 352 GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALN-LNGQLEIVGRA 430 (647)
Q Consensus 352 ~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~-~l~g~~~~g~~ 430 (647)
...+......+|||++|-..+++.+|.+.|.+||.|..|.+... +++|||+|.+.+.|+.|.+ .++.+.|+|..
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 34455566789999999999999999999999999999998875 7799999999999999985 67778899999
Q ss_pred EEEEEeec
Q 006398 431 IKVSAVTD 438 (647)
Q Consensus 431 i~v~~~~~ 438 (647)
|.|.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999877
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.48 E-value=8.4e-07 Score=68.57 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=51.7
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcC-CeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEE
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 631 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG-~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v 631 (647)
..|+|.|| |.... -..|..-|.+++..+| .|..| ..+.|+|.|.+++.|.+|++.|+|..+.|..|.|
T Consensus 3 s~L~V~NL--P~~~d----~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNL--PTNKD----PSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES----TTS-----HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecC--CCCCC----HHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 47999999 64432 3345688999999875 67666 3589999999999999999999999999999999
Q ss_pred EEeCchh
Q 006398 632 TFMVPQT 638 (647)
Q Consensus 632 ~~~~~~~ 638 (647)
+|.+...
T Consensus 72 ~~~~~~r 78 (90)
T PF11608_consen 72 SFSPKNR 78 (90)
T ss_dssp ESS--S-
T ss_pred EEcCCcc
Confidence 9986543
No 137
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.47 E-value=1.2e-07 Score=93.61 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=119.7
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCC---CCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN---SRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~---tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
..|.|.||.+.+|.++|..+|..+|.|..+.|+.... .....-.|||.|.+...+..|..|..+++-+..|.|.++.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4899999999999999999999999999999987442 3456679999999999999999999999999888886654
Q ss_pred chhhhcc-------ccc---ccCCCCCCC-----------------CCCC----------CCCCcEEEEcCCCCCCCHHH
Q 006398 334 AEKNLVQ-------SNS---SIAGASGGG-----------------TGPY----------SGGARRLYVGNLHFNMTEDQ 376 (647)
Q Consensus 334 ~~~~~~~-------~~~---~~~~~~~~~-----------------~~~~----------~~~~~~l~v~nLp~~~~e~~ 376 (647)
....... ... ....+.+.. ..+. ....++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2211100 000 000000000 0000 01136788899998999999
Q ss_pred HHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 006398 377 LRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 427 (647)
Q Consensus 377 l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~ 427 (647)
+.++|+.+|.|....+-.. ...-+|.|+|........|+.. +|+.+.
T Consensus 168 ~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 9999999999877766443 2345788999999988888874 445554
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=1.6e-08 Score=100.24 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=125.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcE-EEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc-eecCeEEEEEEeec
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL-EIVGRAIKVSAVTD 438 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v-~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~-~~~g~~i~v~~~~~ 438 (647)
..||++||.+.++..+|..+|.....- ..-++++ .||+||.+.+...|.+|++.++|. .+.|..+.|.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999865211 2222332 689999999999999999999874 67788888877554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
+..
T Consensus 76 kkq----------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 76 KKQ----------------------------------------------------------------------------- 78 (584)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 431
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEe-eC
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE-KD 597 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~-~~ 597 (647)
.++.+-|.|+ |..+. ++-|-.|...||+|..|... ..
T Consensus 79 --------------------------------rsrk~Qirni--ppql~--------wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 79 --------------------------------RSRKIQIRNI--PPQLQ--------WEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred --------------------------------HhhhhhHhcC--CHHHH--------HHHHHHHHhccCCHhHhhhhccc
Confidence 2335668899 66655 68888899999999998762 22
Q ss_pred C-CccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccCC
Q 006398 598 S-AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 644 (647)
Q Consensus 598 ~-~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~~ 644 (647)
+ ....-|+|.+.+.+..|+..|||..|.+..++|.|++.++-..+-|
T Consensus 117 ~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~q~~p 164 (584)
T KOG2193|consen 117 SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNAQHQP 164 (584)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhhccCc
Confidence 2 3445789999999999999999999999999999999888766554
No 139
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.45 E-value=6.8e-08 Score=90.76 Aligned_cols=71 Identities=28% Similarity=0.506 Sum_probs=62.8
Q ss_pred hhhhHHHHHHHHhh-hcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhc
Q 006398 571 FDMDIKEDVEGECS-KFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEA 641 (647)
Q Consensus 571 ~~~~~~~dl~~~F~-~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~ 641 (647)
.++++.+||+.+|+ +||.|+.++|..+ -.|-+||+|...++|++|+..|||..|+|++|++.|.+...|..
T Consensus 77 ~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 77 HEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 45667899999999 8999999988555 46889999999999999999999999999999999988776644
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=6.1e-07 Score=86.00 Aligned_cols=84 Identities=25% Similarity=0.478 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.....|+|.|||..|++++|+++|..||.+..+.|..++.|.+.|.|-|.|...++|..|++.++|+.++|..|.+..+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 33578999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 6553
No 141
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.6e-07 Score=85.68 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
..-++|||.|+-..++++.|.++|-+.|+|..|.|+....+..+ ||||.|.+...+..|++++||..+.+..+.|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 44689999999999999999999999999999999998877777 99999999999999999999999999998888754
Q ss_pred c
Q 006398 438 D 438 (647)
Q Consensus 438 ~ 438 (647)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 4
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.39 E-value=8e-07 Score=85.21 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
...+|+|.|||+.++.++|+++|..||.+..+.+.+++. |.+.|.|-|.|...++|..||+ +++..+.|..|++...
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 347899999999999999999999999999999998886 8999999999999999999997 9999999999988644
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=2.8e-07 Score=95.58 Aligned_cols=71 Identities=30% Similarity=0.441 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
.+..+|+|.|||..|++++|..+|+.||.|..|..-.. ..|++||+|.++-+|+.|++.|++..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45789999999999999999999999999998766543 478999999999999999999999999999888
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=5e-07 Score=87.01 Aligned_cols=82 Identities=23% Similarity=0.307 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEc
Q 006398 251 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 330 (647)
Q Consensus 251 ~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~ 330 (647)
....+...|||+|+.+.+|.++|...|+.||.|..|.|..+..+|..+|||||+|.+.+.+..++.|+|..|.|..+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cC
Q 006398 331 PS 332 (647)
Q Consensus 331 ~~ 332 (647)
+.
T Consensus 176 ~~ 177 (231)
T KOG4209|consen 176 LK 177 (231)
T ss_pred ee
Confidence 54
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=7.6e-07 Score=83.23 Aligned_cols=69 Identities=16% Similarity=0.352 Sum_probs=60.1
Q ss_pred eEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
.||.+.| ..+.+ .+.|...|.+|-.....++.++ ++|++||.|.++.++..|+..|||..++.++
T Consensus 192 RIfcgdl--gNevn--------d~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 192 RIFCGDL--GNEVN--------DDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred eeecccc--ccccc--------HHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 7888888 55555 4888899999988888877665 6899999999999999999999999999999
Q ss_pred EEEE
Q 006398 629 ITAT 632 (647)
Q Consensus 629 i~v~ 632 (647)
|++.
T Consensus 262 iklR 265 (290)
T KOG0226|consen 262 IKLR 265 (290)
T ss_pred hHhh
Confidence 9864
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.27 E-value=1.9e-06 Score=89.50 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=67.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~ 331 (647)
...+|||+|||++++..+|.++|..||.|+...|......+...+||||+|.+.++++.||.-+...|+++.|.|+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 33569999999999999999999999999998888765334444999999999999999999889999999999964
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.27 E-value=8.6e-07 Score=88.45 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=129.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|++++.+.+.+.++..++..+|.+....+... ....++|+++|.|...+.+..||+......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 3678999999999999999999999998777766664 567789999999999999999998665445555544433322
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
..... . .
T Consensus 167 ~~~~~---~----------------------------------------------~------------------------ 173 (285)
T KOG4210|consen 167 RRGLR---P----------------------------------------------K------------------------ 173 (285)
T ss_pred ccccc---c----------------------------------------------c------------------------
Confidence 21100 0 0
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 597 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~ 597 (647)
.+.. -...++....++|.|| ++.++ .++|..+|..+|.|..+.++..
T Consensus 174 -------------------n~~~----~~~~~~s~~~~~~~~~--~f~~~--------~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 174 -------------------NKLS----RLSSGPSDTIFFVGEL--DFSLT--------RDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred -------------------chhc----ccccCccccceeeccc--ccccc--------hHHHhhhccCcCcceeeccCCC
Confidence 0000 0001223335569999 77777 6888899999999999999544
Q ss_pred -----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhh
Q 006398 598 -----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 639 (647)
Q Consensus 598 -----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~ 639 (647)
.+|+|||.|.+...+..|+.. ++..+++.++.|.+-++...
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 579999999999999999998 99999999999999776644
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.16 E-value=1.2e-05 Score=65.89 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcc--CCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceec----CeEEEE
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEP--FGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIV----GRAIKV 433 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~--~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~----g~~i~v 433 (647)
++|+|.|||...+.++|.+++.. .|....+.++.+ .++.+.|||||-|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998875 367788889888 57788999999999999999999999998775 567888
Q ss_pred EEeec
Q 006398 434 SAVTD 438 (647)
Q Consensus 434 ~~~~~ 438 (647)
.||.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88754
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.10 E-value=2.5e-06 Score=79.84 Aligned_cols=169 Identities=19% Similarity=0.267 Sum_probs=118.2
Q ss_pred eEEEecCCCCCCHHH-H--HHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 258 TVFAYQICLKADERD-V--YEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~-l--~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
.++++++-..+..+- | ...|..|-.+....++.+.. +...+++|+.|.....-..+-. -++..++-.+|++.-..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 345555544443333 2 45566665566666666554 6788899999886555555443 45555555555543221
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
.... .+ .......--+||-+.|...++.+.|...|.+|-......++++ .+|+++||+||-|.+..
T Consensus 177 swed-----Ps--------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pa 243 (290)
T KOG0226|consen 177 SWED-----PS--------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPA 243 (290)
T ss_pred ccCC-----cc--------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHH
Confidence 1111 00 1112233467888999999999999999999988888889998 59999999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
++..|+..|+|.+++.+.|.+.-+..+.
T Consensus 244 d~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 244 DYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999887765543
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=1.1e-05 Score=85.76 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred CcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC--------CCccEEEEeCChHHH
Q 006398 541 SVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--------SAGFVYLRFENTQSA 612 (647)
Q Consensus 541 ~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~--------~~G~afV~F~~~e~A 612 (647)
....++...+.+++|||.|| +..++ +..|...|+.||.|..|+|+-. ..-|+||.|-+-.+|
T Consensus 163 ~~gsfDdgDP~TTNlyv~Nl--npsv~--------E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~ 232 (877)
T KOG0151|consen 163 RPGSFDDGDPQTTNLYVGNL--NPSVD--------ENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADA 232 (877)
T ss_pred CCCcCCCCCCcccceeeecC--Ccccc--------HHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhH
Confidence 33446666788999999999 44444 6899999999999999999643 467999999999999
Q ss_pred HHHHHHHcCceeCCeEEEEEEeC
Q 006398 613 FAAQRALHGRWFAGKMITATFMV 635 (647)
Q Consensus 613 ~~A~~~lnG~~~~gr~i~v~~~~ 635 (647)
++|++.|+|..+.+..|++-|.-
T Consensus 233 era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 233 ERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred HHHHHHhcceeeeeeeeeecccc
Confidence 99999999999999999999863
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.09 E-value=3.9e-07 Score=90.71 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=124.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcC-CccCCceEEEccCcc
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSG-QPLLGQPVMVKPSEA 334 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g-~~~~g~~i~v~~~~~ 334 (647)
..+|+|||.+.++..+|..+|.....-.+..++. -.|||||.+.+...|.+|++ ++| ..+.|..+.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999997653222222221 34799999999999999997 776 457899998876654
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDA 414 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A 414 (647)
.... ++.+-|.|+|+...++.|-.++..||.|..|..+...+ -....-|.|.+.+.+
T Consensus 76 kkqr---------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQR---------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQH 132 (584)
T ss_pred HHHH---------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHH
Confidence 4332 46688999999999999999999999998886654422 133466889999999
Q ss_pred HHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 415 RNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 415 ~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
..||..|+|..|....+.|.|..+...
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCchhhh
Confidence 999999999999999999999877554
No 152
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.08 E-value=1.9e-05 Score=64.70 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=65.0
Q ss_pred CeEEEecCCCCCCHHHHHHHHHh--cCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccC----CceEEE
Q 006398 257 RTVFAYQICLKADERDVYEFFSR--AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL----GQPVMV 329 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~--~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~----g~~i~v 329 (647)
.||+|.|||...|.++|.+++.. .|...-+-+..|-.++.+.|||||.|.+++.|..... ++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999998854 3677788888899999999999999999999999996 9998885 344555
Q ss_pred ccCc
Q 006398 330 KPSE 333 (647)
Q Consensus 330 ~~~~ 333 (647)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5553
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.04 E-value=3.3e-05 Score=82.27 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC----CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE----TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~----~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
.+.++.|||+||++.++++.|...|..||+|..|.|.... ......++||-|.+..+|..|+..|+|+.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3557889999999999999999999999999888776552 444577999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 006398 433 VSAVTDQSG 441 (647)
Q Consensus 433 v~~~~~~~~ 441 (647)
+.|++....
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999866544
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.97 E-value=1.2e-05 Score=77.50 Aligned_cols=82 Identities=33% Similarity=0.505 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.....++|+|+.+.++.+.|...|+.||.|..|.|+.+. .+.++||+||+|.+.+.+..|+. |+|-.|.|..+.|++.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 446889999999999999999999999999999999884 66799999999999999999999 9999999999999997
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
....
T Consensus 178 r~~~ 181 (231)
T KOG4209|consen 178 RTNV 181 (231)
T ss_pred eeec
Confidence 6653
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=1.8e-05 Score=66.47 Aligned_cols=80 Identities=20% Similarity=0.285 Sum_probs=51.9
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc-----CceeCCe
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH-----GRWFAGK 627 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln-----G~~~~gr 627 (647)
.+|+|.++ ...++ .++|..+|+.||.|..|.+.. +-..|||.|.+++.|+.|+..+. +..+.+.
T Consensus 2 ~il~~~g~--~~~~~--------re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~ 70 (105)
T PF08777_consen 2 CILKFSGL--GEPTS--------REDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGK 70 (105)
T ss_dssp -EEEEEE----SS----------HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSS
T ss_pred eEEEEecC--CCCcC--------HHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCc
Confidence 47899998 33344 699999999999999998855 55689999999999999999886 4478999
Q ss_pred EEEEEEeCchhhhccC
Q 006398 628 MITATFMVPQTYEAKF 643 (647)
Q Consensus 628 ~i~v~~~~~~~~~~~~ 643 (647)
.+.+...+.+....+|
T Consensus 71 ~~~~~vLeGeeE~~Yw 86 (105)
T PF08777_consen 71 EVTLEVLEGEEEEEYW 86 (105)
T ss_dssp SEEEE---HHHHHHHH
T ss_pred eEEEEECCCHHHHHHH
Confidence 9999998877766554
No 156
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.87 E-value=1.4e-05 Score=79.10 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=75.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCee--------EEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVR--------DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
...-+|||.+||..+++.+|.++|.+||.|. .|+|.+++.|+..||-|.|.|.++..|+.|+. +++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3457999999999999999999999999886 68889999999999999999999999999998 99999999
Q ss_pred ceEEEccCcchh
Q 006398 325 QPVMVKPSEAEK 336 (647)
Q Consensus 325 ~~i~v~~~~~~~ 336 (647)
.+|+|-.+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999997765444
No 157
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.85 E-value=0.00013 Score=63.79 Aligned_cols=87 Identities=18% Similarity=0.358 Sum_probs=61.2
Q ss_pred CCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 547 TIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 547 ~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
..|||--+|.|.=+. |....+..+..+++.+|.+.|..||.|+=|++.. +..+|+|.+-+.|.+|+. |+|..++|
T Consensus 22 ~~GPpDaTVvVsv~~-~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 22 SQGPPDATVVVSVDS-PSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp ----TT-EEEEEECS--SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred hcCCCCceEEEEecC-CCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECC
Confidence 346677777776662 3333344566778899999999999999887755 689999999999999997 79999999
Q ss_pred eEEEEEEeCchh
Q 006398 627 KMITATFMVPQT 638 (647)
Q Consensus 627 r~i~v~~~~~~~ 638 (647)
+.|+|.+-++.-
T Consensus 97 ~~l~i~LKtpdW 108 (146)
T PF08952_consen 97 RTLKIRLKTPDW 108 (146)
T ss_dssp EEEEEEE-----
T ss_pred EEEEEEeCCccH
Confidence 999999966653
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=7.5e-05 Score=61.62 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=53.5
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEE------------EeeCCCccEEEEeCChHHHHHHHHHH
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF------------VEKDSAGFVYLRFENTQSAFAAQRAL 619 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~------------i~~~~~G~afV~F~~~e~A~~A~~~l 619 (647)
...|.|.+. |... ...|..+|+.||.|+... -......+..|+|+++.+|.+||..
T Consensus 6 ~~wVtVFGf--p~~~---------~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~- 73 (100)
T PF05172_consen 6 ETWVTVFGF--PPSA---------SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK- 73 (100)
T ss_dssp CCEEEEE-----GGG---------HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-
T ss_pred CeEEEEEcc--CHHH---------HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-
Confidence 446888898 6543 489999999999998875 2234567999999999999999996
Q ss_pred cCceeCCeEE-EEEEeCc
Q 006398 620 HGRWFAGKMI-TATFMVP 636 (647)
Q Consensus 620 nG~~~~gr~i-~v~~~~~ 636 (647)
||..|+|..| -|.++.+
T Consensus 74 NG~i~~g~~mvGV~~~~~ 91 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPCDP 91 (100)
T ss_dssp TTEEETTCEEEEEEE-HH
T ss_pred CCeEEcCcEEEEEEEcHH
Confidence 9999998654 4777643
No 159
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.72 E-value=4.6e-05 Score=79.36 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=65.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
..|||.|||..++..+|.++|..||.|....|.... .+....||||+|.+...+..||++- -+.++++.|.|.--...
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 449999999999999999999999999877665542 3333489999999999999999866 68899999999875543
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.66 E-value=9.6e-05 Score=77.33 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhh-cCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCcee--
Q 006398 548 IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSK-FGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF-- 624 (647)
Q Consensus 548 ~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~-fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~-- 624 (647)
-+.++++|+|.||+-||+ .-.|..|+.. .|.|..+ +|..=+.-|||.|.+.++|..-+.+|||...
T Consensus 440 R~~~SnvlhI~nLvRPFT----------lgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFT----------LGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCccceEeeecccccch----------HHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCC
Confidence 366889999999999988 6789999995 5566666 4444567799999999999999999999996
Q ss_pred -CCeEEEEEEeCchhhhcc
Q 006398 625 -AGKMITATFMVPQTYEAK 642 (647)
Q Consensus 625 -~gr~i~v~~~~~~~~~~~ 642 (647)
+++.|.+.|+....+..|
T Consensus 509 sNPK~L~adf~~~deld~h 527 (718)
T KOG2416|consen 509 SNPKHLIADFVRADELDKH 527 (718)
T ss_pred CCCceeEeeecchhHHHHH
Confidence 789999999998887643
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.65 E-value=0.00029 Score=68.92 Aligned_cols=78 Identities=18% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCc--EEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGT--VELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~--v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
...++||+||-|++|.++|.+.+...|. +..++++.+ .+|+++|||+|...+...+.+.++.|....|.|+.-.|.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3568999999999999999999988773 456666666 5899999999999999999999999999999997655544
Q ss_pred e
Q 006398 436 V 436 (647)
Q Consensus 436 ~ 436 (647)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 3
No 162
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.60 E-value=0.00019 Score=55.83 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=46.3
Q ss_pred CeEEEecCCCCCCHHHHHH----HHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 257 RTVFAYQICLKADERDVYE----FFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~----~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
..|||.|||.+.....|+. ++.-|| .|..| +.+.|+|.|.+.+.|..|.. |+|-.+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999998777655 555676 66665 24689999999999999998 99999999999998
Q ss_pred cCcc
Q 006398 331 PSEA 334 (647)
Q Consensus 331 ~~~~ 334 (647)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00027 Score=73.67 Aligned_cols=83 Identities=14% Similarity=0.271 Sum_probs=66.8
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCcee-C
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWF-A 625 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~-~ 625 (647)
-..+|+|.|+ |... ++-..-|..-|..+|+++|.|..+.++.. .+|++|++|++..+|..|++.|||+.| .
T Consensus 57 ~D~vVvv~g~--PvV~--~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGA--PVVG--PARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCC--cccC--hhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3458999999 5432 33455567889999999999999988643 579999999999999999999999998 4
Q ss_pred CeEEEEEEeCch
Q 006398 626 GKMITATFMVPQ 637 (647)
Q Consensus 626 gr~i~v~~~~~~ 637 (647)
+++..|..+..-
T Consensus 133 nHtf~v~~f~d~ 144 (698)
T KOG2314|consen 133 NHTFFVRLFKDF 144 (698)
T ss_pred cceEEeehhhhH
Confidence 777888765543
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00011 Score=72.84 Aligned_cols=85 Identities=22% Similarity=0.322 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEE--------EEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--------LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIV 427 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~ 427 (647)
.....+|||.+||..+++++|.++|.++|.|. .|+|.++ .|+.++|-|.|.|.+...|+.|+..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999999873 4567777 69999999999999999999999999999999
Q ss_pred CeEEEEEEeecCCC
Q 006398 428 GRAIKVSAVTDQSG 441 (647)
Q Consensus 428 g~~i~v~~~~~~~~ 441 (647)
|..|+|.+|.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999887764
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=0.00013 Score=73.52 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=56.8
Q ss_pred ccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC------------------CCccEEEE
Q 006398 544 IFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD------------------SAGFVYLR 605 (647)
Q Consensus 544 ~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~------------------~~G~afV~ 605 (647)
.+.....++++|++.|| |..- +.+.|.++|+.+|.|..|.|.++ .+-||||+
T Consensus 223 ~~~~eel~srtivaenL--P~Dh--------~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvE 292 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENL--PLDH--------SYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVE 292 (484)
T ss_pred CccccccccceEEEecC--Ccch--------HHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhh
Confidence 34444568999999999 6442 26999999999999999999664 14689999
Q ss_pred eCChHHHHHHHHHHcCce
Q 006398 606 FENTQSAFAAQRALHGRW 623 (647)
Q Consensus 606 F~~~e~A~~A~~~lnG~~ 623 (647)
|.+.+.|.+|.+.||-..
T Consensus 293 ye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 293 YEEVEAARKARELLNPEQ 310 (484)
T ss_pred hhhhHHHHHHHHhhchhh
Confidence 999999999999996433
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.29 E-value=0.00058 Score=49.45 Aligned_cols=52 Identities=23% Similarity=0.502 Sum_probs=42.4
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHH
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQ 616 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~ 616 (647)
+.|.|.+. +... .+.|..+|..||.|..+.+. ...-++||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf--~~~~---------~~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGF--PPDL---------AEEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeE--CchH---------HHHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 45778888 4332 58888999999999999985 34568999999999999995
No 167
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.29 E-value=0.00046 Score=58.03 Aligned_cols=70 Identities=24% Similarity=0.409 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC-----CceecCeEEEEEE
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG-----QLEIVGRAIKVSA 435 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~-----g~~~~g~~i~v~~ 435 (647)
..|.|.+++..++-++|+++|..||.|.+|.+... ...|||.|.+.+.|+.|+..+. ++.+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 46889999999999999999999999999988775 3469999999999999997543 3455555555444
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.25 E-value=0.00071 Score=66.01 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=58.3
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----C-Cc--cEEEEeCChHHHHHHHHHHcCcee
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----S-AG--FVYLRFENTQSAFAAQRALHGRWF 624 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~-~G--~afV~F~~~e~A~~A~~~lnG~~~ 624 (647)
+-+||-+| +.-.-+++....| .=.++|+.||.|..|.|.+. + .+ -+||+|.+.++|.+||+..+|..+
T Consensus 115 NLvYVigi--~pkva~Ee~~~vL--k~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 115 NLVYVIGI--PPKVADEEVAPVL--KRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred ceeEEecC--CCCCCcccccccc--cchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 35788888 3333332222211 12468999999999999653 1 12 249999999999999999999999
Q ss_pred CCeEEEEEEeCc
Q 006398 625 AGKMITATFMVP 636 (647)
Q Consensus 625 ~gr~i~v~~~~~ 636 (647)
.|+.|+++|-+-
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999998543
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.23 E-value=0.00028 Score=69.09 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcC--CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
-...++|||||-|.+|.++|.+.+...| .|.++++..+...|.++|||+|...+....++.|+ |-...|.|+.-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3446899999999999999999998777 78888999999899999999999999988999998 77888988877665
Q ss_pred cC
Q 006398 331 PS 332 (647)
Q Consensus 331 ~~ 332 (647)
.+
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 44
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.99 E-value=0.0016 Score=62.53 Aligned_cols=78 Identities=22% Similarity=0.183 Sum_probs=60.1
Q ss_pred CcEEEEcCCC--CCCC---HHHHHHhhccCCcEEEEEeccCCCC--CcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 360 ARRLYVGNLH--FNMT---EDQLRQVFEPFGTVELVQLPLDETG--HCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 360 ~~~l~v~nLp--~~~~---e~~l~~~f~~~G~v~~v~i~~~~~g--~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
++.|++.|+- -.+. +++++..+++||.|..|.|.-.+.. .-.--.||+|..+++|.+|+-.|||.+|+|+.|.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 4456677762 3343 4688999999999988877665321 1133589999999999999999999999999999
Q ss_pred EEEee
Q 006398 433 VSAVT 437 (647)
Q Consensus 433 v~~~~ 437 (647)
..|-.
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 98844
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.95 E-value=0.00032 Score=66.43 Aligned_cols=65 Identities=23% Similarity=0.243 Sum_probs=54.8
Q ss_pred HHHHHhhc-cCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 375 DQLRQVFE-PFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 375 ~~l~~~f~-~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
++|...|+ +||.|..+.|..+-.-.-.|-+||.|...++|++|++.||+.+|.|++|.+.++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 55555666 899999987776644445789999999999999999999999999999999997654
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0032 Score=65.92 Aligned_cols=79 Identities=24% Similarity=0.346 Sum_probs=64.7
Q ss_pred CcEEEEcCCCCCC------CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CeEEE
Q 006398 360 ARRLYVGNLHFNM------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIK 432 (647)
Q Consensus 360 ~~~l~v~nLp~~~------~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~-g~~i~ 432 (647)
-.+|+|.|+|.-- -..-|..+|+++|.|..+.++.++.|..+||.|++|.+..+|..|++.|||..|+ ++...
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4688999998532 2246778899999999999998876669999999999999999999999998886 56777
Q ss_pred EEEeec
Q 006398 433 VSAVTD 438 (647)
Q Consensus 433 v~~~~~ 438 (647)
|..-++
T Consensus 138 v~~f~d 143 (698)
T KOG2314|consen 138 VRLFKD 143 (698)
T ss_pred eehhhh
Confidence 665444
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.82 E-value=0.0032 Score=52.08 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=53.2
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeC-------CCCCcccEEEEEecccccHHHHHHhcCCccCCceEE
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-------NSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVM 328 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~-------~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~ 328 (647)
...|.|-|.|+. ....|...|++||.|.+..-+... ..........|+|.++.+|.+||..||..|.|..|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 367999999998 557788999999999877511000 001234589999999999999999999999986554
Q ss_pred -EccCc
Q 006398 329 -VKPSE 333 (647)
Q Consensus 329 -v~~~~ 333 (647)
|.++.
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 66663
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.77 E-value=0.0028 Score=61.96 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHH------HHhhccCCcEEEEEeccCC-CCCc-c--eEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 357 SGGARRLYVGNLHFNMTEDQL------RQVFEPFGTVELVQLPLDE-TGHC-K--GFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l------~~~f~~~G~v~~v~i~~~~-~g~~-~--g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
.....-+||-+|++.+..+++ .++|.+||.|..|.|.+.. ...+ . .-+||.|.+.++|..||+..+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 344567999999988766552 4678999999999887762 1111 2 2359999999999999999999999
Q ss_pred cCeEEEEEEeecCC
Q 006398 427 VGRAIKVSAVTDQS 440 (647)
Q Consensus 427 ~g~~i~v~~~~~~~ 440 (647)
+|+.|++.|...+-
T Consensus 191 DGr~lkatYGTTKY 204 (480)
T COG5175 191 DGRVLKATYGTTKY 204 (480)
T ss_pred cCceEeeecCchHH
Confidence 99999999987653
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.73 E-value=0.0015 Score=68.73 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhc-cCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee---cCeEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFE-PFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI---VGRAI 431 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~-~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~---~g~~i 431 (647)
....++.|+|.||--.+|.-+|+.++. .+|.|...||-+. +..|||.|.+.+.|.+...+|||+.+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 455688999999999999999999999 5667776655443 56799999999999999999999876 67889
Q ss_pred EEEEeecCC
Q 006398 432 KVSAVTDQS 440 (647)
Q Consensus 432 ~v~~~~~~~ 440 (647)
.|.|+....
T Consensus 515 ~adf~~~de 523 (718)
T KOG2416|consen 515 IADFVRADE 523 (718)
T ss_pred EeeecchhH
Confidence 999876543
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.69 E-value=0.001 Score=62.89 Aligned_cols=72 Identities=24% Similarity=0.262 Sum_probs=61.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCC--------CCcccE----EEEEecccccHHHHHH-hcCCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS--------RRSKGV----GYVEFYDVMSVPMAIA-LSGQPL 322 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~t--------g~~~g~----afV~f~~~~~a~~al~-~~g~~~ 322 (647)
.-.||+++||+.+...-|+++|+.||.|-.|.+.....+ |.+.++ |.|+|.+...|..+.+ ||+.+|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 368999999999999999999999999999999876654 333332 6799999999999886 999999
Q ss_pred CCceE
Q 006398 323 LGQPV 327 (647)
Q Consensus 323 ~g~~i 327 (647)
+|..-
T Consensus 154 ggkk~ 158 (278)
T KOG3152|consen 154 GGKKK 158 (278)
T ss_pred CCCCC
Confidence 98653
No 177
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.60 E-value=0.0036 Score=45.30 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=42.2
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHH
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAI 315 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al 315 (647)
+.|-|.|.++...+. |..+|..||.|.++.+.. ..-++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578899999877654 455888999999988862 3448999999999999985
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.49 E-value=0.0054 Score=58.19 Aligned_cols=86 Identities=30% Similarity=0.395 Sum_probs=74.9
Q ss_pred cHHHHH-HhcCCccCCceEEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEE
Q 006398 310 SVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE 388 (647)
Q Consensus 310 ~a~~al-~~~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~ 388 (647)
-|..|- +|++....|+.+.|.++. ...|+|.||...+..+.+.+.|..||.|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~--------------------------~a~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM--------------------------HAELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec--------------------------cceEEEEecchhhhhHHHHHhhhhcCccc
Confidence 344555 489999999999998863 26799999999999999999999999998
Q ss_pred EEEeccCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 006398 389 LVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421 (647)
Q Consensus 389 ~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l 421 (647)
..+++.+..+...+-++|+|.+.-.|.+|+..+
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 888888877888899999999999999999876
No 179
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.03 E-value=0.0061 Score=61.89 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=57.8
Q ss_pred CCCCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeee---CCC--CC--------cccEEEEEecccccHHHHH
Q 006398 249 EVDPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMD---RNS--RR--------SKGVGYVEFYDVMSVPMAI 315 (647)
Q Consensus 249 ~~~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~---~~t--g~--------~~g~afV~f~~~~~a~~al 315 (647)
....+-++++|.+.|||.+-..+.|.++|..||.|..|+|+.- +.. +. .+-+|||+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3344568899999999999999999999999999999999875 322 21 2458999999999999999
Q ss_pred Hhc
Q 006398 316 ALS 318 (647)
Q Consensus 316 ~~~ 318 (647)
++.
T Consensus 304 e~~ 306 (484)
T KOG1855|consen 304 ELL 306 (484)
T ss_pred Hhh
Confidence 844
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.00 E-value=0.019 Score=50.48 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=51.9
Q ss_pred CCCeEEEecCCCC------CCH---HHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCc
Q 006398 255 DQRTVFAYQICLK------ADE---RDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 325 (647)
Q Consensus 255 ~~~~v~v~~Lp~~------~t~---~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~ 325 (647)
+.-||.|.=+.+. ..+ .+|.+.|..||.+.=|+++. +.-+|+|.+.+.|.+|+.++|..++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHccCCcEECCE
Confidence 4457777665511 222 35677788999988888773 368999999999999999999999999
Q ss_pred eEEEccCc
Q 006398 326 PVMVKPSE 333 (647)
Q Consensus 326 ~i~v~~~~ 333 (647)
.|.|....
T Consensus 98 ~l~i~LKt 105 (146)
T PF08952_consen 98 TLKIRLKT 105 (146)
T ss_dssp EEEEEE--
T ss_pred EEEEEeCC
Confidence 99997543
No 181
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.98 E-value=0.0045 Score=58.64 Aligned_cols=71 Identities=24% Similarity=0.369 Sum_probs=59.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-C--------CCcc----eEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-T--------GHCK----GFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~--------g~~~----g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
.-.||+.+||+.+...-|+++|..||.|-.|.|-... + |... --++|+|.+--.|..+..+||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4689999999999999999999999999999886542 2 1221 2379999999999999999999999
Q ss_pred cCeE
Q 006398 427 VGRA 430 (647)
Q Consensus 427 ~g~~ 430 (647)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 182
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.89 E-value=0.019 Score=53.37 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=48.3
Q ss_pred HHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc--CceeCCeEEEEEEeCch
Q 006398 575 IKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH--GRWFAGKMITATFMVPQ 637 (647)
Q Consensus 575 ~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln--G~~~~gr~i~v~~~~~~ 637 (647)
+...|..+|..|+.+..+.+.+ +-+-+.|.|.+.+.|..|...|+ +..|.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3689999999999999887755 66789999999999999999999 99999999999998543
No 183
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=0.11 Score=50.57 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=56.8
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE-EE
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM-IT 630 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~-i~ 630 (647)
..-|-|.++ |... ..-|..+|.+||.|+..... ..--|.+|.|.+.-+|++||.. ||+.|+|-. |-
T Consensus 197 D~WVTVfGF--ppg~---------~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiG 263 (350)
T KOG4285|consen 197 DTWVTVFGF--PPGQ---------VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIG 263 (350)
T ss_pred cceEEEecc--Cccc---------hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEe
Confidence 446778888 4443 38899999999999987765 3445889999999999999996 999998877 45
Q ss_pred EEEeCch
Q 006398 631 ATFMVPQ 637 (647)
Q Consensus 631 v~~~~~~ 637 (647)
|.-+...
T Consensus 264 VkpCtDk 270 (350)
T KOG4285|consen 264 VKPCTDK 270 (350)
T ss_pred eeecCCH
Confidence 5554433
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.41 E-value=0.089 Score=41.25 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=40.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~ 422 (647)
..++| ..|......||.++|.+||.|.--+|-. .-|||.+.+.+.|..|+..+.
T Consensus 10 HVFhl-tFPkeWK~~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHL-TFPKEWKTSDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEE-E--TT--HHHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEE-eCchHhhhhhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 44555 4899999999999999999986555533 269999999999999998775
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.40 E-value=0.038 Score=57.10 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=58.9
Q ss_pred eEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEE
Q 006398 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATF 633 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~ 633 (647)
.|.|.-+ |.++.+ +.+|..+|..||.|..|-|.-+ .--|.|+|.+.-+|-.|.. .+|..|.|+.|+|-|
T Consensus 374 ~l~lek~--~~glnt-------~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 374 PLALEKS--PFGLNT-------IADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred hhhhhcc--CCCCch-------HhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 3444444 555554 7999999999999999988443 4569999999999988876 599999999999999
Q ss_pred eCc
Q 006398 634 MVP 636 (647)
Q Consensus 634 ~~~ 636 (647)
..+
T Consensus 443 hnp 445 (526)
T KOG2135|consen 443 HNP 445 (526)
T ss_pred ecC
Confidence 887
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.29 E-value=0.07 Score=46.13 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=46.0
Q ss_pred HHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 577 EDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 577 ~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
..|...++.||.|.+|.+.. +-.|.|.|.+..+|..|+.+++. ..-|.-+.|+|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 56677789999999998754 45799999999999999999887 667778888873
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.15 E-value=0.068 Score=41.90 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=36.8
Q ss_pred HHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc
Q 006398 576 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 576 ~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln 620 (647)
..||.++|+.||.|.--=| ....|||...+.+.|..|+..+.
T Consensus 22 ~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHT
T ss_pred hhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhc
Confidence 5999999999999886555 34689999999999999999886
No 188
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=94.96 E-value=0.015 Score=45.09 Aligned_cols=25 Identities=60% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCCCCCccCChHHHHHHHHHhccCC
Q 006398 455 DDEGGGLSLNARSRALLMQKLDRSG 479 (647)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (647)
....+++.+++....++|++++...
T Consensus 5 d~d~~G~~l~a~sR~~LM~KLA~~~ 29 (73)
T PF15519_consen 5 DDDRGGVNLNATSRAALMAKLARGD 29 (73)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4455788899999999999998744
No 189
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=94.63 E-value=0.065 Score=50.22 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=2.8
Q ss_pred EEEEecc
Q 006398 301 GYVEFYD 307 (647)
Q Consensus 301 afV~f~~ 307 (647)
||..|.|
T Consensus 134 Gf~gF~T 140 (180)
T PF08648_consen 134 GFGGFGT 140 (180)
T ss_pred ccccccc
Confidence 3344443
No 190
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.49 E-value=0.094 Score=50.05 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=62.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-h--cC--CccCCceEEEcc
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L--SG--QPLLGQPVMVKP 331 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~--~g--~~~~g~~i~v~~ 331 (647)
..|||.||...+..+.+...|..||+|....++.|-. ++..+-++|.|...-.|.+|+. + .| ....+.++.|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 6899999999999999999999999999888877754 7788899999999999999985 3 22 344567777755
Q ss_pred Cc
Q 006398 332 SE 333 (647)
Q Consensus 332 ~~ 333 (647)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 191
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=94.31 E-value=0.076 Score=56.07 Aligned_cols=9 Identities=44% Similarity=1.040 Sum_probs=4.2
Q ss_pred HHHhhccCC
Q 006398 377 LRQVFEPFG 385 (647)
Q Consensus 377 l~~~f~~~G 385 (647)
|.+++.+||
T Consensus 520 LRevLKKyG 528 (752)
T KOG0670|consen 520 LREVLKKYG 528 (752)
T ss_pred HHHHHHHhC
Confidence 444444444
No 192
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=94.20 E-value=0.063 Score=56.04 Aligned_cols=11 Identities=9% Similarity=-0.360 Sum_probs=4.4
Q ss_pred ecCCCCCCHHH
Q 006398 262 YQICLKADERD 272 (647)
Q Consensus 262 ~~Lp~~~t~~~ 272 (647)
||--+.+|...
T Consensus 555 G~~r~klt~~~ 565 (653)
T KOG2548|consen 555 GNSRPKLTFFE 565 (653)
T ss_pred CCCCCcccHHH
Confidence 33334444333
No 193
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=94.18 E-value=0.074 Score=56.17 Aligned_cols=7 Identities=0% Similarity=-0.306 Sum_probs=2.9
Q ss_pred EEEecCC
Q 006398 259 VFAYQIC 265 (647)
Q Consensus 259 v~v~~Lp 265 (647)
.++++.|
T Consensus 346 ~~~~~~~ 352 (752)
T KOG0670|consen 346 TIEGEKP 352 (752)
T ss_pred hhhcCCc
Confidence 3444444
No 194
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.15 E-value=0.13 Score=56.96 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=54.3
Q ss_pred HHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCcee--CCeEEEEEEeCchhh
Q 006398 576 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF--AGKMITATFMVPQTY 639 (647)
Q Consensus 576 ~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~--~gr~i~v~~~~~~~~ 639 (647)
-.-|..+|++||.|..+...++ --.|.|+|...+.|..|+.+|+|+.+ -|-+.+|.|+....|
T Consensus 312 SssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred HHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 4788999999999999876553 34699999999999999999999996 588999999877665
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.82 E-value=0.42 Score=46.78 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCc-eEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ-PVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~-~i~v~~~~~ 334 (647)
...|-|-++|+..+ ..|..+|++||.|++.....+. -+.+|.|.+.-+|.+||..||..|.|. -|-|+++..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45788888887644 4677899999999987765333 389999999999999999999999885 466777765
Q ss_pred hhhhc
Q 006398 335 EKNLV 339 (647)
Q Consensus 335 ~~~~~ 339 (647)
+.-..
T Consensus 270 ksvi~ 274 (350)
T KOG4285|consen 270 KSVIN 274 (350)
T ss_pred HHHhc
Confidence 54443
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.72 E-value=1 Score=38.11 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=56.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC---eEEEEEE
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG---RAIKVSA 435 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g---~~i~v~~ 435 (647)
+..+++...|..++.++|..+.+.+- .|..+.|+++... .+-.++++|.+.+.|......+||..|+. ..++|-|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvvf 91 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVF 91 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEE
Confidence 44555556666667777877777654 6688889887443 46679999999999999999999988764 3455555
Q ss_pred ee
Q 006398 436 VT 437 (647)
Q Consensus 436 ~~ 437 (647)
..
T Consensus 92 V~ 93 (110)
T PF07576_consen 92 VK 93 (110)
T ss_pred EE
Confidence 43
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.62 E-value=0.48 Score=52.75 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=61.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee--cCeEEEEEEeecC
Q 006398 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI--VGRAIKVSAVTDQ 439 (647)
Q Consensus 362 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~--~g~~i~v~~~~~~ 439 (647)
+..+.|.+...+-.-|..+|.+||.|..++..++ -..|.|+|.+.+.|..|+.+|+|..+ .|-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445555556677889999999999999998877 45799999999999999999999765 5788999998765
Q ss_pred CC
Q 006398 440 SG 441 (647)
Q Consensus 440 ~~ 441 (647)
.-
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 198
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.45 E-value=0.1 Score=41.91 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=45.3
Q ss_pred EEEEecccccHHHHHHh--cCCccCCceEEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 006398 301 GYVEFYDVMSVPMAIAL--SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR 378 (647)
Q Consensus 301 afV~f~~~~~a~~al~~--~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~ 378 (647)
|+|+|....-|+..+.+ +...+.+..+.|............-... .....++|.|.|||..+.+++|.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~----------~~vs~rtVlvsgip~~l~ee~l~ 70 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVF----------SGVSKRTVLVSGIPDVLDEEELR 70 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEE----------EcccCCEEEEeCCCCCCChhhhe
Confidence 68999999999999974 4445566555554322111110000000 01236899999999999999988
Q ss_pred Hhhc
Q 006398 379 QVFE 382 (647)
Q Consensus 379 ~~f~ 382 (647)
+.++
T Consensus 71 D~Le 74 (88)
T PF07292_consen 71 DKLE 74 (88)
T ss_pred eeEE
Confidence 7654
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.36 E-value=0.012 Score=63.28 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
+-.+..+|||+||-..+..+-++.++..||.|..+..+. |||..|..+..+..|+. ++...+.|+.+.++
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 344567999999999999999999999999988776652 99999999999999996 88888999888876
Q ss_pred c
Q 006398 331 P 331 (647)
Q Consensus 331 ~ 331 (647)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 5
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.33 E-value=0.98 Score=46.85 Aligned_cols=67 Identities=12% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
+..|.|-.+|..+|--||..|+..+- .|.+++|++|.. ..+-.++|.|.+.++|..+.+ +||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68999999999999999999997765 889999999654 467789999999999999996 99988864
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.17 E-value=0.47 Score=44.08 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=51.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcc-CCcE---EEEE--eccCCCCC-cceEEEEEeCCHHHHHHHHHHcCCceecC----
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEP-FGTV---ELVQ--LPLDETGH-CKGFGFVQFARLEDARNALNLNGQLEIVG---- 428 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~-~G~v---~~v~--i~~~~~g~-~~g~afVef~~~~~A~~Al~~l~g~~~~g---- 428 (647)
...|.|++||+.+|++++.+.+.+ ++.- ..+. ........ .-.-|||.|.+.+++...+..++|..|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 468999999999999999998777 5544 2332 11111111 23569999999999999999999987743
Q ss_pred -eEEEEEEeecCC
Q 006398 429 -RAIKVSAVTDQS 440 (647)
Q Consensus 429 -~~i~v~~~~~~~ 440 (647)
....|.+|....
T Consensus 87 ~~~~~VE~Apyqk 99 (176)
T PF03467_consen 87 EYPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEEE-SS--
T ss_pred CcceeEEEcchhc
Confidence 356777776643
No 202
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.02 E-value=0.73 Score=34.32 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=44.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC---CcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPF---GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~---G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l 421 (647)
...|+|.++.. ++.++|+.+|..| .....|.++.+. -|=|.|.+.+.|..||..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 46799999854 7888899999988 234688888762 4899999999999999764
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.02 E-value=0.21 Score=54.03 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=55.0
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
++.-++||+|+.. ... .+-++-+....|.|.+++... |+|+.|..+..+.+|+..|+-..++|..+
T Consensus 38 ~~~~~vfv~~~~~--~~s--------~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 38 PPRDTVFVGNISY--LVS--------QEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCceeEecchhh--hhh--------HHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 4566899999922 211 355566677889999988765 89999999999999999999999988887
Q ss_pred EEEE
Q 006398 630 TATF 633 (647)
Q Consensus 630 ~v~~ 633 (647)
.+..
T Consensus 104 ~~~~ 107 (668)
T KOG2253|consen 104 IENV 107 (668)
T ss_pred hccc
Confidence 6654
No 204
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.71 E-value=0.79 Score=34.15 Aligned_cols=55 Identities=18% Similarity=0.184 Sum_probs=41.5
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhc---CCeEEEEEeeCCCccEEEEeCChHHHHHHHHHH
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF---GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRAL 619 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~f---G~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~l 619 (647)
...|+|.++. +++ -+||+.+|..| .....|...-+ ..|-|-|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd---~ls--------T~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD---ELS--------TDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC---CCC--------HHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 3478999982 233 38999999998 23556766554 36899999999999999875
No 205
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.73 E-value=0.94 Score=39.42 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCCCCC----CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 358 GGARRLYVGNLHFNM----TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~----~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
++..+|.|.=|...+ +...|...++.||+|..|.+.- +.-|.|.|.+..+|-+|+.+++. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 445677776665544 3355666778999999998763 34699999999999999998886 566778888
Q ss_pred EEe
Q 006398 434 SAV 436 (647)
Q Consensus 434 ~~~ 436 (647)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 773
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.72 E-value=1.9 Score=36.51 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=47.8
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
..+.+...|+.++-++|..+...+- .|..++|+++.. .++-.+++.|.+.+.|..+.. +||..+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444544455555556665555554 777888888753 478889999999999999996 99988754
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.01 E-value=0.27 Score=45.65 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=43.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHh-cCCe---eEEEEeeeCC-C-CCcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSR-AGKV---RDVRLIMDRN-S-RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~-~G~i---~~v~~~~~~~-t-g~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
....|.|.+||+++|++++.+.+.. ++.. ..+.-..... . ...-.-|||.|.+.+++...+. ++|..+..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3469999999999999999887766 5544 2232112211 1 1233469999999999999886 88876643
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.38 E-value=2 Score=46.02 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=65.4
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHhhccC----CcEEEEEeccCC-----------CCC----------------------
Q 006398 358 GGARRLYVGNLHFN-MTEDQLRQVFEPF----GTVELVQLPLDE-----------TGH---------------------- 399 (647)
Q Consensus 358 ~~~~~l~v~nLp~~-~~e~~l~~~f~~~----G~v~~v~i~~~~-----------~g~---------------------- 399 (647)
..+++|-|.||.|. +...+|.-+|..| |.|..|.|+... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45789999999997 5788888888754 588888876532 111
Q ss_pred ---------------cceEEEEEeCCHHHHHHHHHHcCCceec--CeEEEEEEeecCCC
Q 006398 400 ---------------CKGFGFVQFARLEDARNALNLNGQLEIV--GRAIKVSAVTDQSG 441 (647)
Q Consensus 400 ---------------~~g~afVef~~~~~A~~Al~~l~g~~~~--g~~i~v~~~~~~~~ 441 (647)
.-.||.|+|.+++.|.+....++|+.|. +..|-+.|..+...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~ 310 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMT 310 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCc
Confidence 0148999999999999999999999996 56788888777654
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.18 E-value=0.22 Score=51.64 Aligned_cols=75 Identities=13% Similarity=0.071 Sum_probs=62.1
Q ss_pred CCCCCeEEEecCCCCC-CHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKA-DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~-t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~ 331 (647)
..+.+.+-+.-.|+.+ |-.+|...|.+||.|.+|++-.. --.|.|+|.+..+|-.|...++..|.++.|+|-+
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEE
Confidence 4455666777777774 56789999999999999998654 2379999999999999999999999999999977
Q ss_pred Cc
Q 006398 332 SE 333 (647)
Q Consensus 332 ~~ 333 (647)
..
T Consensus 443 hn 444 (526)
T KOG2135|consen 443 HN 444 (526)
T ss_pred ec
Confidence 54
No 210
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.09 E-value=0.92 Score=42.32 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=45.4
Q ss_pred CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceecCeEEEEEEeec
Q 006398 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKVSAVTD 438 (647)
Q Consensus 373 ~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~--g~~~~g~~i~v~~~~~ 438 (647)
....|..+|..|+.+..+.+++. -+-+.|.|.+.+.|..|...|+ +..|.|..+.|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999998776666654 4569999999999999999999 9999999999999843
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.01 E-value=0.16 Score=50.78 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCeEEEecCCCCCCHHHHH---HHHHhcCCeeEEEEeeeCC--CC-CcccEEEEEecccccHHHHHH-hcCCccCCceEE
Q 006398 256 QRTVFAYQICLKADERDVY---EFFSRAGKVRDVRLIMDRN--SR-RSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVM 328 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~---~~f~~~G~i~~v~~~~~~~--tg-~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~ 328 (647)
.+-+||-+|+..+-.+.+. +.|.+||.|..|.+..+.- .+ ..-.-+||+|...++|..||. .+|+.+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3578999999886555543 3789999999999887662 11 122238999999999999997 999999999977
Q ss_pred EccC
Q 006398 329 VKPS 332 (647)
Q Consensus 329 v~~~ 332 (647)
..+.
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 6544
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.12 E-value=2.4 Score=32.13 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=42.4
Q ss_pred HHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEE
Q 006398 576 KEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 631 (647)
Q Consensus 576 ~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v 631 (647)
.+||+..+..|+... |... ..| -||-|.+..+|++|....+|..|.+-.|.+
T Consensus 14 v~d~K~~Lr~y~~~~-I~~d--~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 14 VEDFKKRLRKYRWDR-IRDD--RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHHhcCCcce-EEec--CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 689999999998544 3332 223 599999999999999999999999988776
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.07 E-value=2.3 Score=32.18 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 371 NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 371 ~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
.++-++|+..+.+|+. .. |..+.+| -||.|.+..+|..|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999999975 23 3344444 799999999999999999999888877654
No 214
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.89 E-value=12 Score=36.90 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC--------CCCcceEEEEEeCCHHHHHHHH----HHcCC--c
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--------TGHCKGFGFVQFARLEDARNAL----NLNGQ--L 424 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~--------~g~~~g~afVef~~~~~A~~Al----~~l~g--~ 424 (647)
.++.|++.|+...++-..+...|.+||+|+.|.++.+. .......+.+-|-+.+.+.... +.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999998763 2223467899999888766543 33322 2
Q ss_pred eecCeEEEEEEeecCC
Q 006398 425 EIVGRAIKVSAVTDQS 440 (647)
Q Consensus 425 ~~~g~~i~v~~~~~~~ 440 (647)
.+....|.|+|..-+.
T Consensus 94 ~L~S~~L~lsFV~l~y 109 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNY 109 (309)
T ss_pred hcCCcceeEEEEEEec
Confidence 4677889999987543
No 215
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.70 E-value=0.91 Score=48.19 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=50.8
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhh--cCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCce--eCCe
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSK--FGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW--FAGK 627 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~--fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~--~~gr 627 (647)
-++|+|.-| |+++- +++|+-||.. .-.++.|.+-.+. -=||+|++..+|+.|.+.|.-.. |-|+
T Consensus 175 RcIvilREI--pettp--------~e~Vk~lf~~encPk~iscefa~N~--nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 175 RCIVILREI--PETTP--------IEVVKALFKGENCPKVISCEFAHND--NWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred eeEEEEeec--CCCCh--------HHHHHHHhccCCCCCceeeeeeecC--ceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 446778888 65544 7899999976 6688888885543 24999999999999999886433 6666
Q ss_pred EEEEE
Q 006398 628 MITAT 632 (647)
Q Consensus 628 ~i~v~ 632 (647)
+|...
T Consensus 243 pImAR 247 (684)
T KOG2591|consen 243 PIMAR 247 (684)
T ss_pred chhhh
Confidence 65443
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.29 E-value=0.58 Score=42.43 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=48.2
Q ss_pred HHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCe-EEEEEEeCchhh
Q 006398 577 EDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK-MITATFMVPQTY 639 (647)
Q Consensus 577 ~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr-~i~v~~~~~~~~ 639 (647)
.....+|..|....-+.+.+ +.+...|.|.+++.|..|...+++..|.|+ .+++.|+.+...
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 45556666665555444433 667899999999999999999999999988 888888877654
No 217
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.01 E-value=0.87 Score=49.07 Aligned_cols=8 Identities=0% Similarity=-0.280 Sum_probs=2.9
Q ss_pred ecCCCCCC
Q 006398 262 YQICLKAD 269 (647)
Q Consensus 262 ~~Lp~~~t 269 (647)
.|-|..|+
T Consensus 851 q~~~~qvs 858 (878)
T KOG1847|consen 851 QNEPSQVS 858 (878)
T ss_pred ccchhhhH
Confidence 33333333
No 218
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.87 E-value=2.2 Score=44.32 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC---eEEEEEE
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG---RAIKVSA 435 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g---~~i~v~~ 435 (647)
+..|+|..+|..++..||..|+..+- .|..|.|+++..+ .+-.++|+|.+.++|....+.+||..|+. -.+.|-|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 68899999999999999999998764 6789999997433 25569999999999999999999987754 3444444
Q ss_pred ee
Q 006398 436 VT 437 (647)
Q Consensus 436 ~~ 437 (647)
+.
T Consensus 153 V~ 154 (493)
T KOG0804|consen 153 VD 154 (493)
T ss_pred EE
Confidence 33
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.17 E-value=0.38 Score=48.10 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=46.8
Q ss_pred HHhhhcCCeEEEEEeeCC--------CccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 581 GECSKFGKLKHIFVEKDS--------AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 581 ~~F~~fG~V~~v~i~~~~--------~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
..|..||.|..|.+.... ...+||+|...++|..||...+|..+.|+.|++.|.+..
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 458889999998874421 234699999999999999999999999999888886543
No 220
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=83.06 E-value=0.52 Score=52.19 Aligned_cols=7 Identities=14% Similarity=-0.002 Sum_probs=4.0
Q ss_pred eEEeccC
Q 006398 554 CLLLKNM 560 (647)
Q Consensus 554 ~l~V~nl 560 (647)
.++..||
T Consensus 903 s~~d~nl 909 (1194)
T KOG4246|consen 903 SASDDNL 909 (1194)
T ss_pred ccccccc
Confidence 4456666
No 221
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.28 E-value=2.8 Score=44.66 Aligned_cols=70 Identities=11% Similarity=0.157 Sum_probs=52.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcc--CCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCeEEEEEE
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEP--FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ--LEIVGRAIKVSA 435 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~--~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g--~~~~g~~i~v~~ 435 (647)
-+.|+|+.||..+-.++|+.+|.. +-.+..|.+-.+. -=||.|.+..+|+.|...|.- ..|.|+.|.+.+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 456777999999999999999985 5567777765441 269999999999999876543 356676665544
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.23 E-value=5.3 Score=42.98 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=61.5
Q ss_pred CCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhc----CCeEEEEEeeC--------------C-----------
Q 006398 548 IGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF----GKLKHIFVEKD--------------S----------- 598 (647)
Q Consensus 548 ~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~f----G~V~~v~i~~~--------------~----------- 598 (647)
.+..++.|-|.|| +|..-=..||+-+|+.| |.|.+|.|.+. +
T Consensus 170 ~~~~T~RLAVvNM---------DWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~ 240 (650)
T KOG2318|consen 170 LGEETKRLAVVNM---------DWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEY 240 (650)
T ss_pred cccccceeeEecc---------ccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccC
Confidence 3668889999999 12211258888888876 69999998531 1
Q ss_pred ---------------------------CccEEEEeCChHHHHHHHHHHcCceeC--CeEEEEEEeCch
Q 006398 599 ---------------------------AGFVYLRFENTQSAFAAQRALHGRWFA--GKMITATFMVPQ 637 (647)
Q Consensus 599 ---------------------------~G~afV~F~~~e~A~~A~~~lnG~~~~--gr~i~v~~~~~~ 637 (647)
-=||.|+|.+++.|...+..-.|..|. +..|-+.|+|..
T Consensus 241 ~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 241 KESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred cccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 126899999999999999999999995 667777777654
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.27 E-value=2.4 Score=33.01 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCCe-----EEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 576 KEDVEGECSKFGKL-----KHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 576 ~~dl~~~F~~fG~V-----~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
..+|..++..-+.| -.|.|.. .++||+-... .|..++..|++..+.|++|.|+.|
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I~~---~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDIFD---NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE-S---S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhccCCCHHhEEEEEEee---eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46777777766544 4566633 5789887654 888999999999999999999875
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.07 E-value=45 Score=33.15 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=97.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCC-------CCCcccEEEEEecccccHHHHH----H-hc--CC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN-------SRRSKGVGYVEFYDVMSVPMAI----A-LS--GQ 320 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~-------tg~~~g~afV~f~~~~~a~~al----~-~~--g~ 320 (647)
..+.|.+.|+...++--.+...|.+||+|+.|-++.+.. .........+-|-+.+.+...- + |. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 346788999998888888888899999999999998761 1234467889999888775542 2 22 13
Q ss_pred ccCCceEEEccCc-----chh---hhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCC-CHHHHHHh---hccCC---
Q 006398 321 PLLGQPVMVKPSE-----AEK---NLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM-TEDQLRQV---FEPFG--- 385 (647)
Q Consensus 321 ~~~g~~i~v~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~-~e~~l~~~---f~~~G--- 385 (647)
.+....|.+.+.. ... ...+.. ......-...-.....++.|+|.-- ..+ +++-|.+- +..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~-~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~R 171 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFS-DYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKR 171 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchh-hHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCce
Confidence 3444555543322 111 001110 0000000111122344677777544 334 33333222 22223
Q ss_pred -cEEEEEeccCC---CCCcceEEEEEeCCHHHHHHHHHHcC
Q 006398 386 -TVELVQLPLDE---TGHCKGFGFVQFARLEDARNALNLNG 422 (647)
Q Consensus 386 -~v~~v~i~~~~---~g~~~g~afVef~~~~~A~~Al~~l~ 422 (647)
.|+.|.|+... ...++.||.+.|-+...|...+..+.
T Consensus 172 YVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 172 YVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 45777777652 33458899999999999999887655
No 225
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.90 E-value=6.5 Score=30.59 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=36.5
Q ss_pred CCCCHHHHHHhhccCC-----cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 370 FNMTEDQLRQVFEPFG-----TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 370 ~~~~e~~l~~~f~~~G-----~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
..++..+|..++...+ .|-.|.|... |+||+-... .|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578888888887664 4567777654 899998775 678899999999999999999864
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=74.18 E-value=3.8 Score=36.93 Aligned_cols=121 Identities=7% Similarity=-0.034 Sum_probs=79.4
Q ss_pred CeEEEecCC--CCCCHHHHHHHHHh-cCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 257 RTVFAYQIC--LKADERDVYEFFSR-AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 257 ~~v~v~~Lp--~~~t~~~l~~~f~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
....||.+. ..++-..|...+.. ++....+.+.. ...++..+.|.+.+++..++......+.|..|.+..-.
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~-----l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRD-----LGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEE-----eCCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 345555553 23667777776644 45443444442 24579999999999999999888888888888886554
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEeccC
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLD 395 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~ 395 (647)
+......... ....-=|.|.|||.. .+++.|..+.+.+|.+..+.....
T Consensus 91 ~~~~~~~~~~-------------~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 91 PDFNPSEVKF-------------EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccccce-------------eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 2221111000 011233677899977 588999999999999988876554
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.85 E-value=23 Score=32.44 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=56.8
Q ss_pred CcEEEEcCCCCCCC-----HHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe-EEEE
Q 006398 360 ARRLYVGNLHFNMT-----EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-AIKV 433 (647)
Q Consensus 360 ~~~l~v~nLp~~~~-----e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~-~i~v 433 (647)
...+.+.+++..+- ......+|..|......++++ +.+..-|-|.+++.|..|...+++..|.|. .+..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 35577777776542 234455666666665555655 367899999999999999999999999998 8888
Q ss_pred EEeecCCC
Q 006398 434 SAVTDQSG 441 (647)
Q Consensus 434 ~~~~~~~~ 441 (647)
-|+.....
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 88776544
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.83 E-value=21 Score=34.93 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcE-EEEEeccCCCCCcceEEEEEeCCHH
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLE 412 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v-~~v~i~~~~~g~~~g~afVef~~~~ 412 (647)
.....-|+|+||+.++--.+|+..+.+.+.+ ..+.|- | ..|-||++|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCcc
Confidence 3445679999999999999999999987754 444442 2 3678999997543
No 229
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.97 E-value=31 Score=25.65 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhhcCCeEEEEEee
Q 006398 574 DIKEDVEGECSKFGKLKHIFVEK 596 (647)
Q Consensus 574 ~~~~dl~~~F~~fG~V~~v~i~~ 596 (647)
.|..+|+++|+..|.|.-+.+..
T Consensus 6 ~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 6 EITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHhcCcEEEEEEcc
Confidence 46799999999999999888743
No 230
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=54.53 E-value=88 Score=23.29 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcC-CeEEEEEeeC-CCccEEEEeCChHHHHHHHHHHcCce
Q 006398 576 KEDVEGECSKFG-KLKHIFVEKD-SAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 576 ~~dl~~~F~~fG-~V~~v~i~~~-~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
..+|..+|...| +|.++.+... .++...|.+.+.+.|..+++. +|+.
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCE
Confidence 688999998877 7888876332 345555566666666666654 4544
No 231
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=53.39 E-value=33 Score=27.90 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCchhhhhhHHHHHHHHhhhcCCeEE-----EEEee---CCCccEEEEeCChHHHHHHH
Q 006398 565 NETYEEFDMDIKEDVEGECSKFGKLKH-----IFVEK---DSAGFVYLRFENTQSAFAAQ 616 (647)
Q Consensus 565 ~~~d~~~~~~~~~dl~~~F~~fG~V~~-----v~i~~---~~~G~afV~F~~~e~A~~A~ 616 (647)
..+|++.|++..+-+...|.+||.=-= +..+- ++.-.+.|+|.+.+.|..|.
T Consensus 11 dv~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 11 DVRDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred eecCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHh
Confidence 345788999999999999999983221 11111 12456899999999988765
No 232
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=48.70 E-value=57 Score=33.71 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=59.0
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhccC----CcEEEEEeccCCCCCc-------------------------------
Q 006398 357 SGGARRLYVGNLHFN-MTEDQLRQVFEPF----GTVELVQLPLDETGHC------------------------------- 400 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~-~~e~~l~~~f~~~----G~v~~v~i~~~~~g~~------------------------------- 400 (647)
..++..|.|-||.|. +...+|..+|+.| |.|..|.|+....|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 355788999999986 6778888887743 5666676643211000
Q ss_pred -----------------------------------ceEEEEEeCCHHHHHHHHHHcCCceecC--eEEEEEEeecCC
Q 006398 401 -----------------------------------KGFGFVQFARLEDARNALNLNGQLEIVG--RAIKVSAVTDQS 440 (647)
Q Consensus 401 -----------------------------------~g~afVef~~~~~A~~Al~~l~g~~~~g--~~i~v~~~~~~~ 440 (647)
-.||.|+|.+.+.+......++|..+.. ..+-+.|..+..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~ 299 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSL 299 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCc
Confidence 1278999999999998889999988763 566677766544
No 233
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=44.91 E-value=62 Score=24.72 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=44.1
Q ss_pred HHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 271 RDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 271 ~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
.+|.+.|...| ++..|.-+....++...-+-||+.....+-.. -++=..|+|+.|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecC
Confidence 46888899988 88899988888877667777887776544333 24445778888888654
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=43.76 E-value=65 Score=31.69 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=37.3
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCC-eeEEEEeeeCCCCCcccEEEEEecccccH
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGK-VRDVRLIMDRNSRRSKGVGYVEFYDVMSV 311 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~-i~~v~~~~~~~tg~~~g~afV~f~~~~~a 311 (647)
.-|||+||+.++--.+|+..+.+.|- ...+.+. ...|-||+.|.+...+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCccCC
Confidence 56999999999999999999988773 2334332 3567899999876543
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=43 Score=34.55 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcE-EEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v-~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~ 422 (647)
-...|-|.+.|.....+||..+|+.|+.- -.|.|+.+ -.||..|.+...|..||.+-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhccC
Confidence 35789999999999999999999998754 45555543 369999999999999998644
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=37.48 E-value=89 Score=23.85 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=44.7
Q ss_pred HHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 271 RDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 271 ~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
++|.+.|...| .|..|.-+....++...-.-||++....+...+ ++=..|++..|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecC
Confidence 57888888888 888888888887777777888888776653333 4445678888888654
No 237
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.70 E-value=24 Score=32.24 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHH-HhcCCeeEEEEeeeCCC-CCcccEEEEEecccccHHHHHHhcCCccCCceEEE
Q 006398 256 QRTVFAYQICLKADERDVYEFF-SRAGKVRDVRLIMDRNS-RRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f-~~~G~i~~v~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v 329 (647)
.+++|.. +|++.|..+. +.-|.+.+|.+-...+. ...+|-.||+|.+.++|.++++.......-..|..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~r 181 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELKR 181 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHHH
Confidence 3566666 4555554443 12278888887664431 25889999999999999999976655555444443
No 238
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.11 E-value=40 Score=32.83 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCeEEEecCCCC------------CCHHHHHHHHHhcCCeeEEEEee-eC----CCCCcccEEEEEec
Q 006398 256 QRTVFAYQICLK------------ADERDVYEFFSRAGKVRDVRLIM-DR----NSRRSKGVGYVEFY 306 (647)
Q Consensus 256 ~~~v~v~~Lp~~------------~t~~~l~~~f~~~G~i~~v~~~~-~~----~tg~~~g~afV~f~ 306 (647)
.-+||+.+||.. -++.-|...|+.||.|.+|.|.. |+ .+|...|..|-.|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg 216 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFG 216 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccc
Confidence 358999999843 24677999999999999998865 32 34555554444443
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.10 E-value=60 Score=33.53 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHh
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIAL 317 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~ 317 (647)
-.+.|-|.++|.....+||...|+.|+ .--+|.++-+. .||-.|.+..-|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 457899999999988888999998886 44466666443 799999999999999986
No 240
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.91 E-value=1.3e+02 Score=31.12 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=29.9
Q ss_pred cEEEEeCChHHHHHHHHHHcCceeC--CeEEEEEEeCch
Q 006398 601 FVYLRFENTQSAFAAQRALHGRWFA--GKMITATFMVPQ 637 (647)
Q Consensus 601 ~afV~F~~~e~A~~A~~~lnG~~~~--gr~i~v~~~~~~ 637 (647)
+|.|+|.+++.+......-.|..+. +..+-+.|++..
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 6899999999999999999999986 455666676543
No 241
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.82 E-value=1.3e+02 Score=34.31 Aligned_cols=12 Identities=0% Similarity=-0.097 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhc
Q 006398 575 IKEDVEGECSKF 586 (647)
Q Consensus 575 ~~~dl~~~F~~f 586 (647)
+...|..-|+.-
T Consensus 658 lfakL~~~Fatq 669 (1102)
T KOG1924|consen 658 LFAKLALKFATQ 669 (1102)
T ss_pred HHHHHHHHhhcc
Confidence 444455555443
No 242
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.22 E-value=82 Score=28.91 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHHHhhhcCCeEEEEEee------CCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEE
Q 006398 576 KEDVEGECSKFGKLKHIFVEK------DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 632 (647)
Q Consensus 576 ~~dl~~~F~~fG~V~~v~i~~------~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~ 632 (647)
.++|.++-+ |.+..|.+.. .-+|.+||+|.+.+.|..++.. ++..++-..|...
T Consensus 123 l~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 123 LDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRS 182 (205)
T ss_pred HHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHH
Confidence 577777766 8888887732 2479999999999999987765 4444444444433
No 243
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=33.81 E-value=1e+02 Score=25.64 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=41.2
Q ss_pred CCchhhhhhHHHHHHHHhhhcCCeEEEEEee----CC----------------CccEEEEeCChHHHHHHHHHHc
Q 006398 566 ETYEEFDMDIKEDVEGECSKFGKLKHIFVEK----DS----------------AGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 566 ~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~----~~----------------~G~afV~F~~~e~A~~A~~~ln 620 (647)
...-+.|..+.+....+|..||.+..+.+-. .+ .-|.+|.|.+.+....|...+-
T Consensus 12 ~~nk~aY~~~A~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m 86 (103)
T PF07237_consen 12 TANKDAYRAMAEKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMM 86 (103)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhh
Confidence 3345788888999999999999988876621 11 1367999999999988887763
No 244
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=33.58 E-value=2.3e+02 Score=24.50 Aligned_cols=77 Identities=18% Similarity=0.098 Sum_probs=49.2
Q ss_pred EEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeE-EEEEee----CCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 555 LLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLK-HIFVEK----DSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 555 l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~-~v~i~~----~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.+...+.++...+-.+....|..-+..+|..+|.-. ...++. -+.|..-|.=...+.+..|+..+. .++|++|
T Consensus 18 Yiaf~vise~~i~~~~l~~~I~~s~l~llG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv 95 (124)
T COG1369 18 YIAFEVISEEEITRGELVRLIRRSLLSLLGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAR--EVNGKRV 95 (124)
T ss_pred EEEEEEeccccCChhHHHHHHHHHHHHHcCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHHH--HhCCceE
Confidence 334444445555555666666677777777776322 222221 245666666677899999998887 8888888
Q ss_pred EEEE
Q 006398 630 TATF 633 (647)
Q Consensus 630 ~v~~ 633 (647)
.|..
T Consensus 96 ~I~~ 99 (124)
T COG1369 96 IIVV 99 (124)
T ss_pred EEEE
Confidence 7765
No 245
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=33.28 E-value=54 Score=28.06 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=32.3
Q ss_pred eEEEecCCCC---------CCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccc-cHHHHHHh
Q 006398 258 TVFAYQICLK---------ADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVM-SVPMAIAL 317 (647)
Q Consensus 258 ~v~v~~Lp~~---------~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~-~a~~al~~ 317 (647)
+++|-|++.. ++.+.|.+.|..|.++. +..+.+.. ...|++.|.|..-- .-..|+.|
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 5677777543 45678999999998875 55666654 57899999998654 44555543
No 246
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.28 E-value=73 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=28.7
Q ss_pred CeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 588 KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 588 ~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
.|.++.....-+|+.|||=.+..+...|+..+-+.....
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 577777777789999999999999999998877766544
No 247
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=33.10 E-value=6.2 Score=33.55 Aligned_cols=11 Identities=9% Similarity=-0.016 Sum_probs=7.2
Q ss_pred CeEEEecCCCC
Q 006398 257 RTVFAYQICLK 267 (647)
Q Consensus 257 ~~v~v~~Lp~~ 267 (647)
-.||.||+|+.
T Consensus 86 VPvyy~nfpp~ 96 (146)
T PF11671_consen 86 VPVYYGNFPPR 96 (146)
T ss_pred cceEecCCCCC
Confidence 46777777663
No 248
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.36 E-value=62 Score=33.48 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=48.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCCCC---CcceEEEEEeCCHHHHHHHHHHcCCceec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETG---HCKGFGFVQFARLEDARNALNLNGQLEIV 427 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~g---~~~g~afVef~~~~~A~~Al~~l~g~~~~ 427 (647)
...|.|.+||+.+++++|.+...++- .|.+..+.....+ .--+.|||.|...++.......++|+.|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 46789999999999999888887753 2333333322211 12467999999999988877888887653
No 249
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=31.59 E-value=82 Score=26.97 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=30.4
Q ss_pred eEEeccCCCCCCCCchh-hhhhHHHHHHHHhhhcCCeEEEEEee--CCCccEEEEeCChHHHHHHHHHH
Q 006398 554 CLLLKNMFDPKNETYEE-FDMDIKEDVEGECSKFGKLKHIFVEK--DSAGFVYLRFENTQSAFAAQRAL 619 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~-~~~~~~~dl~~~F~~fG~V~~v~i~~--~~~G~afV~F~~~e~A~~A~~~l 619 (647)
+++|-|+ +.+.+++. ..-.-.+.|.+.|+.|..++...+.. ...|+++|+|..--..-.-...|
T Consensus 10 mgIi~N~--~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNI--PTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE------EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcC--ccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 6788898 54443222 11112478888888898776443321 13589999999865554433334
No 250
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.43 E-value=1.7e+02 Score=23.75 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcC-CeEEEEEeeCCC-ccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhh
Q 006398 575 IKEDVEGECSKFG-KLKHIFVEKDSA-GFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640 (647)
Q Consensus 575 ~~~dl~~~F~~fG-~V~~v~i~~~~~-G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~ 640 (647)
..+.+..++..+| .|+.+.+..... ..+.+++.+.+.|.++...+...=- -+.-.+..++.++|.
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~-v~~et~~a~~~~e~~ 87 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGN-VRTETLRAFPWDEFD 87 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCc-eEEEEEecCCHHHHH
Confidence 4567777888775 788888755433 4558899999988887765543210 122444455555554
No 251
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.93 E-value=1.3e+02 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=25.4
Q ss_pred cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 386 TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 386 ~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
.|..+..+.. .+||.|||-.+..++..|+..+.+...
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccceee
Confidence 4556555543 589999999999999999987776543
No 252
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=25.90 E-value=1.5e+02 Score=26.73 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcC-CeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCce
Q 006398 575 IKEDVEGECSKFG-KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 575 ~~~dl~~~F~~fG-~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
+...|.......| .|..|.++..-.||.||+....+++..++..+.|..
T Consensus 21 V~~~L~~~~~~~~~~i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 21 VALMLAMRAKKENLPIYAILAPPELKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred HHHHHHHHHHhCCCcEEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 3455666554323 277788877778999999998899999998887644
No 253
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.80 E-value=1.1e+02 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEE
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDV 286 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v 286 (647)
...++|+-|||..+|++.|..+..++|-+..+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34799999999999999999999999854433
No 254
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=24.68 E-value=56 Score=31.45 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=7.0
Q ss_pred cceEEEEEeCCHH
Q 006398 400 CKGFGFVQFARLE 412 (647)
Q Consensus 400 ~~g~afVef~~~~ 412 (647)
++..|.|+|..++
T Consensus 215 SKQHaviQyR~v~ 227 (293)
T KOG1882|consen 215 SKQHAVIQYRLVE 227 (293)
T ss_pred cccceeeeeeecc
Confidence 3445666665544
No 255
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=24.55 E-value=2.6e+02 Score=25.08 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred eEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee-CCCccEEEEeCChHHHHHHHHHHcC
Q 006398 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-DSAGFVYLRFENTQSAFAAQRALHG 621 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~-~~~G~afV~F~~~e~A~~A~~~lnG 621 (647)
..|++|| - ......+.|...|..+|..- +..+++.+ ...+.+.|+|.-+-+|..-+..|--
T Consensus 6 la~~G~l--~---~~~~~ld~i~~~l~~L~~~~--~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGL--R---MFQYKLDDIKNWLASLYKPR--ISDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECCh--h---hhHHHHHHHHHHHHHHHhcc--cccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 4677787 2 22445566677777777662 33344422 2567899999999999999888854
No 256
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.23 E-value=2.7e+02 Score=21.53 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCCeEEEEEeeCC-CccEEEEeCChHHHHHHHHHHc
Q 006398 576 KEDVEGECSKFGKLKHIFVEKDS-AGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 576 ~~dl~~~F~~fG~V~~v~i~~~~-~G~afV~F~~~e~A~~A~~~ln 620 (647)
..+|.+.+..+| +....+..-+ -+++|+-|.+.+.|..++..|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 467777788899 6666664432 4677888889999999988874
No 257
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=23.94 E-value=36 Score=39.89 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=9.2
Q ss_pred cEEEEeCChHHHHHHHHHHc
Q 006398 601 FVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 601 ~afV~F~~~e~A~~A~~~ln 620 (647)
+.+|++.+.-.-++|+..+.
T Consensus 953 yl~ve~~~e~~vqra~~e~~ 972 (997)
T KOG0334|consen 953 YLLVEGPDELSVQRAIEELE 972 (997)
T ss_pred hhhhhcchhHHHHHHHHHHH
Confidence 34444444444444444443
No 258
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.85 E-value=43 Score=32.09 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLP 393 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~ 393 (647)
...+||+.|+|...+++.|..+...+|.+..+.+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 36889999999999999999999999876665443
No 259
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.10 E-value=2e+02 Score=28.19 Aligned_cols=68 Identities=25% Similarity=0.510 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCCC------------CCHHHHHHhhccCCcEEEEEeccC-C-----CCCcce-----E---------EE
Q 006398 358 GGARRLYVGNLHFN------------MTEDQLRQVFEPFGTVELVQLPLD-E-----TGHCKG-----F---------GF 405 (647)
Q Consensus 358 ~~~~~l~v~nLp~~------------~~e~~l~~~f~~~G~v~~v~i~~~-~-----~g~~~g-----~---------af 405 (647)
....+|++.+||-. .++.-|...|+.||.|..|.|+.. + +|...| | ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34567888888731 356789999999999998887654 2 343322 2 24
Q ss_pred EEeCCHHHHHHHHHHcCCce
Q 006398 406 VQFARLEDARNALNLNGQLE 425 (647)
Q Consensus 406 Vef~~~~~A~~Al~~l~g~~ 425 (647)
|+|.....-..|+..|-|+.
T Consensus 227 vqfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHHhHHHHHHHHhcch
Confidence 55555555555666666653
No 260
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.58 E-value=4.1e+02 Score=21.29 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=43.7
Q ss_pred eEEEecCCCCCCHHHHHHHHHh-cC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH
Q 006398 258 TVFAYQICLKADERDVYEFFSR-AG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~-~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 316 (647)
..|+--.+..++..+|+..++. || .|..|..+.-+. ..--|||+|.....|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 4566677899999999999976 66 777888776542 33469999999998887754
No 261
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=21.87 E-value=3e+02 Score=21.26 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=35.5
Q ss_pred eEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeC
Q 006398 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA 625 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 625 (647)
.|++.++ .++.+ ..+||.|..+-= +.-=-|-|-|.++|...+..|....|=
T Consensus 5 iVyl~~~----------------k~~r~-L~kfG~i~Y~Sk----k~kYvvlYvn~~~~e~~~~kl~~l~fV 55 (71)
T PF09902_consen 5 IVYLYSL----------------KDARQ-LRKFGDIHYVSK----KMKYVVLYVNEEDVEEIIEKLKKLKFV 55 (71)
T ss_pred EEEEech----------------HhHHh-HhhcccEEEEEC----CccEEEEEECHHHHHHHHHHHhcCCCe
Confidence 6788888 45554 378999987722 111245577899999999988877763
No 262
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.83 E-value=59 Score=33.63 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCC--CCCcccEEEEEecccccHHHHHH-hcCCccC
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRN--SRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL 323 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~--tg~~~g~afV~f~~~~~a~~al~-~~g~~~~ 323 (647)
...|.|.+||+.+++.+|.+.+.+|- .+....+..... -..-.+.|||.|...++...... ++|..+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 46899999999999999988887754 222333332111 01235689999999999777776 7776653
No 263
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.74 E-value=3e+02 Score=19.38 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcC-CeEEEEEeeC--CCccEEEEeCChHHHHHHH
Q 006398 576 KEDVEGECSKFG-KLKHIFVEKD--SAGFVYLRFENTQSAFAAQ 616 (647)
Q Consensus 576 ~~dl~~~F~~fG-~V~~v~i~~~--~~G~afV~F~~~e~A~~A~ 616 (647)
...|...|...| +|..+.+... ..+...+.+++.+.|..++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 578888888887 7877776443 4566688888888777765
No 264
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.05 E-value=1.3e+02 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.3
Q ss_pred ccEEEEeCChHHHHHHHHHHcCcee
Q 006398 600 GFVYLRFENTQSAFAAQRALHGRWF 624 (647)
Q Consensus 600 G~afV~F~~~e~A~~A~~~lnG~~~ 624 (647)
...+|.|.+..+|.+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999999999986554
No 265
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.94 E-value=37 Score=25.86 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=26.8
Q ss_pred HHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc
Q 006398 577 EDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 577 ~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln 620 (647)
++|...|..++....+.- -.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vk-----L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK-----LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhh-----hhhccCCCCHHHHHHHHHHhh
Confidence 467777766544433211 258999999999999888764
No 266
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=20.88 E-value=41 Score=39.39 Aligned_cols=12 Identities=17% Similarity=-0.000 Sum_probs=4.8
Q ss_pred EEEEeCCHHHHH
Q 006398 404 GFVQFARLEDAR 415 (647)
Q Consensus 404 afVef~~~~~A~ 415 (647)
|.|-..+-+.|.
T Consensus 441 ~li~aPtrela~ 452 (997)
T KOG0334|consen 441 ALILAPTRELAM 452 (997)
T ss_pred EEEEcCCHHHHH
Confidence 334444444333
No 267
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.43 E-value=53 Score=29.34 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 572 DMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 572 ~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
+..|...|..++...|.+.-..+ +.++..++|.+.+++.+++.. ....|+|..|.+.-..+
T Consensus 31 ~~~l~~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 31 LSALEQELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSP 91 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcc
Confidence 44556777777777776666666 668999999999999999873 55557787777766553
No 268
>PRK03717 ribonuclease P protein component 2; Provisional
Probab=20.27 E-value=5.6e+02 Score=22.02 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred CCCchhhhhhHHHHHHHHhhhcCCeEE---E-EEeeCCCccEEEEeC--ChHHHHHHHHHHcCceeCCeEEEEEE
Q 006398 565 NETYEEFDMDIKEDVEGECSKFGKLKH---I-FVEKDSAGFVYLRFE--NTQSAFAAQRALHGRWFAGKMITATF 633 (647)
Q Consensus 565 ~~~d~~~~~~~~~dl~~~F~~fG~V~~---v-~i~~~~~G~afV~F~--~~e~A~~A~~~lnG~~~~gr~i~v~~ 633 (647)
.++..+.+..|.+-+..+|+.||.-.. + .+ .+..+.|.|.-. ..+.+..|+..++ .++|.++.+..
T Consensus 28 ~~~~~~l~~~Ir~av~~~fGd~G~~~~~~~li~f-~~~t~~gIlRc~R~~~~~v~aAL~li~--~i~~~~v~ir~ 99 (120)
T PRK03717 28 PFTKDEIKKAIWEASLSTLGELGTARAKPWFIKF-DEKTQTGIVRCDRKHVEELRFALTLVT--EINGSKAIIRT 99 (120)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhhccccceEEEE-eCCCCEEEEEcCchhHHHHHHHHHHHH--hCCCeeEEEEE
Confidence 455567788888999999999985321 2 22 223455655543 4566777777776 34666655543
No 269
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=20.22 E-value=17 Score=39.14 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
.+.|+|.|+++.++..+|..++..+-.+..+.+-.. .......+.+|.|.-......|+.+||++.+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
No 270
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.14 E-value=4.4e+02 Score=20.71 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=43.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHh-cC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH
Q 006398 258 TVFAYQICLKADERDVYEFFSR-AG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA 316 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~-~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~ 316 (647)
.-|+-.++..++..+|+..++. || .|..|..+.-+. .---|||++...+.|.....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 4677778999999999999976 56 777777776542 33469999998888876653
Done!