Query 006398
Match_columns 647
No_of_seqs 386 out of 3262
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 7.1E-40 2.4E-44 334.1 26.5 246 253-637 38-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.8E-39 6E-44 329.8 28.4 239 255-639 21-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 3.3E-30 1.1E-34 249.4 18.5 168 254-439 13-181 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.4E-29 4.8E-34 241.9 20.0 174 254-441 11-185 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 4.3E-29 1.5E-33 232.2 18.6 163 255-436 2-168 (168)
6 3md3_A Nuclear and cytoplasmic 100.0 6.7E-29 2.3E-33 230.4 18.8 163 257-437 1-165 (166)
7 1fxl_A Paraneoplastic encephal 100.0 8.7E-29 3E-33 229.9 19.3 162 256-436 2-167 (167)
8 2cjk_A Nuclear polyadenylated 100.0 2.9E-29 9.9E-34 233.2 14.5 164 255-439 2-166 (167)
9 2qfj_A FBP-interacting repress 100.0 5.9E-29 2E-33 241.5 17.1 178 256-441 28-207 (216)
10 3pgw_A U1-A; protein-RNA compl 100.0 2.8E-27 9.6E-32 239.5 29.3 262 357-635 6-281 (282)
11 3nmr_A Cugbp ELAV-like family 100.0 2.4E-28 8.1E-33 228.8 18.6 165 255-437 2-175 (175)
12 4f02_A Polyadenylate-binding p 100.0 3.4E-28 1.2E-32 235.2 18.7 166 358-638 13-182 (213)
13 3md3_A Nuclear and cytoplasmic 100.0 1.8E-27 6.2E-32 220.7 20.3 161 361-636 1-166 (166)
14 1fje_B Nucleolin RBD12, protei 100.0 3.9E-28 1.3E-32 227.4 12.6 165 253-439 10-174 (175)
15 1b7f_A Protein (SXL-lethal pro 99.9 5.2E-27 1.8E-31 218.1 19.8 158 360-634 3-168 (168)
16 2yh0_A Splicing factor U2AF 65 99.9 5.4E-27 1.8E-31 224.3 20.0 180 255-440 3-195 (198)
17 1fxl_A Paraneoplastic encephal 99.9 1E-26 3.4E-31 215.9 20.4 158 360-634 2-167 (167)
18 2g4b_A Splicing factor U2AF 65 99.9 4E-27 1.4E-31 219.9 17.3 158 255-437 3-172 (172)
19 3smz_A Protein raver-1, ribonu 99.9 1.5E-26 5.3E-31 234.3 20.7 170 255-440 94-265 (284)
20 2qfj_A FBP-interacting repress 99.9 1.8E-26 6.2E-31 223.9 19.7 179 360-644 28-212 (216)
21 1l3k_A Heterogeneous nuclear r 99.9 2.4E-26 8.2E-31 219.4 20.0 170 358-640 11-186 (196)
22 2adc_A Polypyrimidine tract-bi 99.9 5.8E-26 2E-30 222.1 21.1 194 358-637 32-228 (229)
23 3tyt_A Heterogeneous nuclear r 99.9 2.5E-26 8.6E-31 219.6 17.7 176 255-436 3-204 (205)
24 3pgw_A U1-A; protein-RNA compl 99.9 1.1E-25 3.9E-30 227.7 21.8 178 253-437 6-281 (282)
25 2adc_A Polypyrimidine tract-bi 99.9 4.4E-26 1.5E-30 223.0 18.1 177 254-439 32-228 (229)
26 2ghp_A U4/U6 snRNA-associated 99.9 4.1E-26 1.4E-30 232.2 18.2 171 255-439 116-291 (292)
27 3nmr_A Cugbp ELAV-like family 99.9 6.8E-26 2.3E-30 212.0 17.4 160 360-635 3-175 (175)
28 1qm9_A Polypyrimidine tract-bi 99.9 7.9E-26 2.7E-30 216.2 18.1 192 360-637 3-197 (198)
29 1qm9_A Polypyrimidine tract-bi 99.9 5.1E-26 1.8E-30 217.6 15.9 175 256-439 3-197 (198)
30 2cjk_A Nuclear polyadenylated 99.9 3.3E-26 1.1E-30 212.5 12.7 158 360-637 3-166 (167)
31 1fje_B Nucleolin RBD12, protei 99.9 3.1E-26 1.1E-30 214.4 12.7 166 356-637 9-174 (175)
32 3tyt_A Heterogeneous nuclear r 99.9 3.4E-25 1.2E-29 211.8 19.5 192 359-634 3-204 (205)
33 3sde_A Paraspeckle component 1 99.9 1.8E-25 6.3E-30 223.1 18.2 157 253-440 19-180 (261)
34 2g4b_A Splicing factor U2AF 65 99.9 2.8E-25 9.7E-30 207.3 18.3 154 359-635 3-172 (172)
35 2yh0_A Splicing factor U2AF 65 99.9 7.5E-25 2.6E-29 209.4 20.7 175 360-637 4-194 (198)
36 3sde_A Paraspeckle component 1 99.9 8.5E-24 2.9E-28 211.0 18.8 153 358-638 20-180 (261)
37 3s6e_A RNA-binding protein 39; 99.8 6.2E-21 2.1E-25 162.5 10.8 97 550-646 5-102 (114)
38 3v4m_A Splicing factor U2AF 65 99.8 6.6E-20 2.2E-24 154.5 11.2 94 549-642 2-102 (105)
39 2kn4_A Immunoglobulin G-bindin 99.8 4E-19 1.4E-23 162.9 15.6 149 285-441 2-152 (158)
40 4f25_A Polyadenylate-binding p 99.8 7.4E-19 2.5E-23 151.5 8.6 107 256-375 5-112 (115)
41 2i2y_A Fusion protein consists 99.7 3.2E-18 1.1E-22 155.3 10.7 78 550-637 71-148 (150)
42 2i2y_A Fusion protein consists 99.7 5.9E-18 2E-22 153.5 10.3 137 295-439 10-148 (150)
43 2kn4_A Immunoglobulin G-bindin 99.7 3.3E-17 1.1E-21 150.0 14.2 77 551-637 69-150 (158)
44 4fxv_A ELAV-like protein 1; RN 99.7 1.2E-17 4.2E-22 139.3 9.8 80 255-334 18-98 (99)
45 3ue2_A Poly(U)-binding-splicin 99.7 2.5E-17 8.5E-22 141.3 9.4 87 551-642 19-114 (118)
46 2pe8_A Splicing factor 45; RRM 99.7 5.2E-17 1.8E-21 136.6 10.8 88 549-641 5-98 (105)
47 2lxi_A RNA-binding protein 10; 99.7 1.8E-17 6.1E-22 136.2 5.1 82 256-337 1-85 (91)
48 4fxv_A ELAV-like protein 1; RN 99.7 1.8E-16 6.3E-21 132.2 11.2 79 360-438 19-98 (99)
49 3s8s_A Histone-lysine N-methyl 99.7 1E-16 3.5E-21 136.4 9.7 83 254-336 4-87 (110)
50 2wbr_A GW182, gawky, LD47780P; 99.7 1.5E-16 5.3E-21 125.8 9.7 83 551-644 6-88 (89)
51 3pgw_S U1-70K; protein-RNA com 99.7 4.9E-17 1.7E-21 172.6 8.1 167 273-441 9-184 (437)
52 3p5t_L Cleavage and polyadenyl 99.7 9.6E-17 3.3E-21 131.7 6.5 81 257-337 2-85 (90)
53 3s7r_A Heterogeneous nuclear r 99.7 3.9E-16 1.3E-20 127.3 10.0 80 253-332 8-87 (87)
54 2lkz_A RNA-binding protein 5; 99.7 1.5E-16 5.3E-21 131.1 7.6 79 255-333 8-93 (95)
55 2dgs_A DAZ-associated protein 99.7 4.2E-16 1.4E-20 130.5 10.4 85 253-337 7-91 (99)
56 3bs9_A Nucleolysin TIA-1 isofo 99.6 3.5E-16 1.2E-20 127.5 8.7 80 255-334 5-85 (87)
57 3r27_A HnRNP L, heterogeneous 99.6 7.4E-16 2.5E-20 126.8 10.5 78 549-637 18-97 (100)
58 1whw_A Hypothetical protein ri 99.6 5.5E-16 1.9E-20 129.7 9.9 84 254-337 6-90 (99)
59 2cq1_A PTB-like protein L; RRM 99.6 1.4E-15 4.8E-20 126.8 12.0 87 549-646 12-100 (101)
60 2dit_A HIV TAT specific factor 99.6 4.9E-16 1.7E-20 133.1 9.3 91 549-639 12-104 (112)
61 1p27_B RNA-binding protein 8A; 99.6 6.3E-16 2.2E-20 131.2 9.9 83 253-335 20-103 (106)
62 3ns6_A Eukaryotic translation 99.6 2.2E-16 7.4E-21 132.3 6.7 83 255-337 5-95 (100)
63 1s79_A Lupus LA protein; RRM, 99.6 3.7E-16 1.3E-20 131.1 8.1 80 254-334 9-88 (103)
64 2dgo_A Cytotoxic granule-assoc 99.6 1.6E-15 5.5E-20 130.7 12.4 85 253-337 12-97 (115)
65 2dnm_A SRP46 splicing factor; 99.6 8E-16 2.7E-20 129.7 10.3 83 254-336 11-94 (103)
66 3md1_A Nuclear and cytoplasmic 99.6 6E-16 2.1E-20 124.9 8.8 79 257-335 2-81 (83)
67 2x1f_A MRNA 3'-END-processing 99.6 6.8E-16 2.3E-20 128.3 9.2 83 255-337 1-84 (96)
68 2dnz_A Probable RNA-binding pr 99.6 9E-16 3.1E-20 127.4 9.8 82 255-336 4-86 (95)
69 1x5u_A Splicing factor 3B subu 99.6 8.5E-16 2.9E-20 130.1 9.8 85 253-337 12-97 (105)
70 2jrs_A RNA-binding protein 39; 99.6 9.8E-16 3.4E-20 130.1 10.1 84 252-335 22-106 (108)
71 3mdf_A Peptidyl-prolyl CIS-tra 99.6 7.2E-16 2.5E-20 125.1 8.9 79 254-332 5-84 (85)
72 2cq4_A RNA binding motif prote 99.6 5.2E-16 1.8E-20 133.5 8.4 85 253-337 22-106 (114)
73 3s8s_A Histone-lysine N-methyl 99.6 2.1E-15 7.1E-20 128.3 11.8 82 358-439 4-86 (110)
74 2la6_A RNA-binding protein FUS 99.6 1.3E-15 4.4E-20 127.4 10.4 81 252-332 9-98 (99)
75 2mss_A Protein (musashi1); RNA 99.6 3.6E-16 1.2E-20 123.5 6.6 75 258-332 1-75 (75)
76 2cqc_A Arginine/serine-rich sp 99.6 1.2E-15 4.1E-20 126.6 10.0 80 254-333 13-93 (95)
77 2lxi_A RNA-binding protein 10; 99.6 4.5E-16 1.5E-20 127.8 7.3 81 360-440 1-84 (91)
78 2do4_A Squamous cell carcinoma 99.6 1.5E-15 5E-20 127.4 10.3 82 253-335 14-96 (100)
79 2dng_A Eukaryotic translation 99.6 1.3E-15 4.3E-20 128.5 9.7 83 253-336 12-94 (103)
80 3lqv_A PRE-mRNA branch site pr 99.6 7.4E-16 2.5E-20 132.8 8.3 103 254-386 6-109 (115)
81 3ucg_A Polyadenylate-binding p 99.6 1.3E-15 4.4E-20 124.7 9.3 79 256-334 6-84 (89)
82 2cph_A RNA binding motif prote 99.6 1.7E-15 5.9E-20 128.7 10.4 86 252-337 11-99 (107)
83 2cpf_A RNA binding motif prote 99.6 9.6E-16 3.3E-20 128.0 8.7 82 255-336 4-89 (98)
84 1x4h_A RNA-binding protein 28; 99.6 1.7E-15 5.9E-20 129.6 10.4 84 253-336 12-102 (111)
85 2cpz_A CUG triplet repeat RNA- 99.6 1.5E-15 5E-20 130.9 9.9 84 254-337 23-107 (115)
86 1x4d_A Matrin 3; structural ge 99.6 1.4E-15 4.7E-20 126.6 9.3 84 549-643 12-98 (102)
87 1x5t_A Splicing factor 3B subu 99.6 7.1E-16 2.4E-20 128.3 7.6 82 255-336 4-87 (96)
88 2lkz_A RNA-binding protein 5; 99.6 1.2E-15 4E-20 125.8 8.7 81 358-438 7-94 (95)
89 2cq0_A Eukaryotic translation 99.6 9.4E-16 3.2E-20 129.3 8.3 83 254-336 13-96 (103)
90 2e5h_A Zinc finger CCHC-type a 99.6 4.6E-15 1.6E-19 122.8 12.3 85 353-437 9-94 (94)
91 1oo0_B CG8781-PA, drosophila Y 99.6 1.1E-15 3.9E-20 130.5 8.9 84 252-335 22-106 (110)
92 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-15 4.4E-20 128.3 9.1 84 253-336 9-93 (102)
93 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-15 3.8E-20 129.1 8.7 84 253-337 12-96 (104)
94 2cqd_A RNA-binding region cont 99.6 3.6E-15 1.2E-19 128.7 12.0 83 253-336 14-97 (116)
95 2dh8_A DAZ-associated protein 99.6 1.5E-15 5.1E-20 128.6 9.3 85 253-337 13-97 (105)
96 2div_A TRNA selenocysteine ass 99.6 1.3E-15 4.4E-20 127.5 8.7 83 253-335 6-94 (99)
97 2do4_A Squamous cell carcinoma 99.6 6.9E-15 2.4E-19 123.2 13.2 84 357-440 14-97 (100)
98 2cqb_A Peptidyl-prolyl CIS-tra 99.6 9.8E-16 3.3E-20 129.0 8.0 84 254-337 10-94 (102)
99 2dgo_A Cytotoxic granule-assoc 99.6 1.4E-14 4.9E-19 124.7 15.4 87 356-442 11-98 (115)
100 2dnh_A Bruno-like 5, RNA bindi 99.6 2.6E-15 8.8E-20 127.1 10.5 83 254-337 13-99 (105)
101 1sjq_A Polypyrimidine tract-bi 99.6 1.4E-15 4.8E-20 126.5 8.6 80 549-639 13-94 (105)
102 2dgp_A Bruno-like 4, RNA bindi 99.6 1.7E-15 5.9E-20 128.4 9.3 84 253-336 10-97 (106)
103 2kxn_B Transformer-2 protein h 99.6 1.7E-15 5.7E-20 133.0 9.4 83 253-335 43-126 (129)
104 2cq0_A Eukaryotic translation 99.6 7.5E-15 2.6E-19 123.7 13.1 86 356-441 11-97 (103)
105 2e5h_A Zinc finger CCHC-type a 99.6 1.7E-15 5.7E-20 125.5 8.6 79 254-332 14-93 (94)
106 1whw_A Hypothetical protein ri 99.6 8.3E-15 2.9E-19 122.5 12.9 85 358-442 6-91 (99)
107 2lea_A Serine/arginine-rich sp 99.6 7.7E-16 2.6E-20 136.4 6.8 122 300-441 6-129 (135)
108 3ex7_B RNA-binding protein 8A; 99.6 1.7E-15 5.8E-20 132.9 9.0 87 251-337 17-104 (126)
109 2fy1_A RNA-binding motif prote 99.6 3.4E-15 1.2E-19 128.5 10.6 81 255-336 6-87 (116)
110 3bs9_A Nucleolysin TIA-1 isofo 99.6 5E-15 1.7E-19 120.6 10.9 82 358-439 4-86 (87)
111 2dhg_A TRNA selenocysteine ass 99.6 3.3E-15 1.1E-19 126.2 10.1 83 254-337 7-92 (104)
112 2d9p_A Polyadenylate-binding p 99.6 3.1E-15 1.1E-19 126.1 9.7 82 254-337 13-95 (103)
113 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.3E-20 128.2 7.8 84 255-338 7-91 (104)
114 3n9u_C Cleavage and polyadenyl 99.6 2.1E-15 7.1E-20 136.8 9.1 82 255-336 54-138 (156)
115 2cqc_A Arginine/serine-rich sp 99.6 8E-15 2.7E-19 121.6 12.0 83 356-438 11-94 (95)
116 2khc_A Testis-specific RNP-typ 99.6 1.1E-14 3.7E-19 126.1 13.2 76 549-634 37-117 (118)
117 1wez_A HnRNP H', FTP-3, hetero 99.6 1.6E-15 5.4E-20 127.3 7.6 79 254-334 13-91 (102)
118 2cpy_A RNA-binding protein 12; 99.6 1.7E-15 5.8E-20 130.2 8.0 83 254-337 13-96 (114)
119 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.5E-15 1.5E-19 120.3 10.1 80 358-437 5-85 (85)
120 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.5E-15 2.6E-19 123.5 11.8 85 357-441 9-94 (102)
121 1iqt_A AUF1, heterogeneous nuc 99.6 8.4E-16 2.9E-20 121.4 5.5 75 258-332 1-75 (75)
122 2do0_A HnRNP M, heterogeneous 99.6 2.8E-14 9.6E-19 122.7 15.6 86 356-441 11-96 (114)
123 2ywk_A Putative RNA-binding pr 99.6 3.3E-15 1.1E-19 123.9 9.4 79 254-333 14-93 (95)
124 1u6f_A Tcubp1, RNA-binding pro 99.6 6.5E-15 2.2E-19 131.5 12.0 86 252-337 38-124 (139)
125 2cqg_A TDP-43, TAR DNA-binding 99.6 5.9E-15 2E-19 124.4 11.0 84 253-337 12-95 (103)
126 4f25_A Polyadenylate-binding p 99.6 4E-15 1.4E-19 128.0 10.1 81 360-441 5-85 (115)
127 2cqd_A RNA-binding region cont 99.6 2.3E-14 7.7E-19 123.6 14.9 87 354-441 11-98 (116)
128 2dgs_A DAZ-associated protein 99.6 1E-14 3.4E-19 122.0 12.3 84 357-441 7-91 (99)
129 4a8x_A RNA-binding protein wit 99.6 1.7E-15 6E-20 123.6 7.4 81 255-335 3-85 (88)
130 3md1_A Nuclear and cytoplasmic 99.6 8.4E-15 2.9E-19 118.1 11.3 80 361-440 2-82 (83)
131 2hvz_A Splicing factor, argini 99.6 1.9E-15 6.4E-20 127.0 7.7 99 257-369 1-100 (101)
132 1x5u_A Splicing factor 3B subu 99.6 9.5E-15 3.2E-19 123.6 12.1 86 356-441 11-97 (105)
133 2d9p_A Polyadenylate-binding p 99.6 9.4E-15 3.2E-19 123.1 12.0 85 357-442 12-96 (103)
134 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.5E-15 1.9E-19 136.0 11.5 139 303-441 11-154 (165)
135 1x4f_A Matrin 3; structural ge 99.6 3.8E-15 1.3E-19 125.7 9.5 85 549-644 22-109 (112)
136 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-15 7.5E-20 128.3 8.0 84 252-335 21-104 (109)
137 2dnz_A Probable RNA-binding pr 99.6 8.4E-15 2.9E-19 121.5 11.4 84 358-441 3-87 (95)
138 2dnm_A SRP46 splicing factor; 99.6 6.2E-15 2.1E-19 124.3 10.7 87 355-441 8-95 (103)
139 2x1f_A MRNA 3'-END-processing 99.6 8.7E-15 3E-19 121.6 11.5 82 360-441 2-84 (96)
140 3ulh_A THO complex subunit 4; 99.6 3.7E-15 1.3E-19 126.6 9.3 79 254-333 27-106 (107)
141 2cpe_A RNA-binding protein EWS 99.6 2.7E-15 9.3E-20 128.8 8.5 85 253-337 12-105 (113)
142 2khc_A Testis-specific RNP-typ 99.6 4E-15 1.4E-19 128.9 9.6 80 253-332 37-117 (118)
143 2cq3_A RNA-binding protein 9; 99.6 2.6E-14 8.8E-19 120.4 14.2 86 355-441 10-95 (103)
144 1x4e_A RNA binding motif, sing 99.6 9.4E-16 3.2E-20 124.4 5.0 79 254-332 3-82 (85)
145 2ywk_A Putative RNA-binding pr 99.6 5.8E-15 2E-19 122.4 10.0 83 356-438 12-94 (95)
146 1x5s_A Cold-inducible RNA-bind 99.6 7.5E-15 2.6E-19 123.5 10.7 86 356-441 8-94 (102)
147 2dnh_A Bruno-like 5, RNA bindi 99.6 1.6E-14 5.4E-19 122.2 12.7 84 358-441 13-99 (105)
148 2ad9_A Polypyrimidine tract-bi 99.6 4.6E-15 1.6E-19 126.7 9.3 81 549-640 28-110 (119)
149 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.3E-15 7.9E-20 119.5 7.0 75 257-332 1-76 (77)
150 1wel_A RNA-binding protein 12; 99.6 1.8E-15 6.2E-20 132.2 7.0 84 253-336 22-105 (124)
151 1wg5_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 125.9 8.5 80 254-334 13-93 (104)
152 3ulh_A THO complex subunit 4; 99.6 1.2E-14 4E-19 123.5 11.8 82 356-437 25-106 (107)
153 1wex_A Hypothetical protein (r 99.6 7.7E-15 2.6E-19 123.1 10.4 80 549-639 12-93 (104)
154 2cqi_A Nucleolysin TIAR; RNA r 99.6 9E-15 3.1E-19 123.3 10.8 82 253-336 12-94 (103)
155 2ki2_A SS-DNA binding protein 99.6 1.2E-15 4.1E-20 125.2 5.2 80 257-337 2-82 (90)
156 2do0_A HnRNP M, heterogeneous 99.6 1.3E-14 4.5E-19 124.8 11.9 82 253-335 12-94 (114)
157 2nlw_A Eukaryotic translation 99.6 6.6E-15 2.3E-19 124.4 9.8 80 253-334 12-99 (105)
158 1x4h_A RNA-binding protein 28; 99.6 2.3E-14 7.7E-19 122.6 13.3 86 356-441 11-103 (111)
159 1jmt_A Splicing factor U2AF 35 99.6 5.5E-15 1.9E-19 124.1 9.1 84 552-635 1-104 (104)
160 2m2b_A RNA-binding protein 10; 99.6 3.5E-15 1.2E-19 131.7 8.2 83 253-336 20-109 (131)
161 2cqi_A Nucleolysin TIAR; RNA r 99.6 3E-14 1E-18 120.0 13.6 85 356-441 11-95 (103)
162 2fy1_A RNA-binding motif prote 99.6 1.2E-14 4.2E-19 125.0 11.3 84 358-441 5-88 (116)
163 2cqp_A RNA-binding protein 12; 99.6 2.8E-15 9.5E-20 125.2 7.1 81 254-334 13-94 (98)
164 2dis_A Unnamed protein product 99.6 6.4E-15 2.2E-19 125.6 9.4 84 254-337 6-94 (109)
165 1x5t_A Splicing factor 3B subu 99.6 8.9E-15 3E-19 121.6 10.1 84 358-441 3-88 (96)
166 2cph_A RNA binding motif prote 99.6 2E-14 6.9E-19 122.0 12.4 86 356-441 11-99 (107)
167 2dgw_A Probable RNA-binding pr 99.6 6.2E-15 2.1E-19 121.2 8.9 80 254-335 8-87 (91)
168 2wbr_A GW182, gawky, LD47780P; 99.6 8.3E-15 2.8E-19 115.9 9.1 75 359-438 6-80 (89)
169 2cpz_A CUG triplet repeat RNA- 99.6 2E-14 6.7E-19 123.8 12.3 84 358-441 23-107 (115)
170 1x4b_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 128.4 8.0 83 255-337 26-108 (116)
171 2dgv_A HnRNP M, heterogeneous 99.6 7E-15 2.4E-19 121.2 9.1 80 254-335 6-86 (92)
172 2cq3_A RNA-binding protein 9; 99.6 2.3E-14 7.9E-19 120.7 12.4 87 549-645 12-101 (103)
173 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.3E-15 4.5E-20 127.6 4.5 81 253-334 16-97 (100)
174 2dnn_A RNA-binding protein 12; 99.6 4.4E-15 1.5E-19 125.6 7.8 80 255-336 15-94 (109)
175 2db1_A Heterogeneous nuclear r 99.6 4.2E-15 1.5E-19 128.4 7.8 82 254-336 15-99 (118)
176 3r27_A HnRNP L, heterogeneous 99.6 1.1E-14 3.8E-19 119.8 9.8 79 357-440 18-98 (100)
177 2jwn_A Embryonic polyadenylate 99.6 5.2E-15 1.8E-19 129.4 8.4 80 255-334 35-114 (124)
178 2ek1_A RNA-binding protein 12; 99.6 2.3E-15 7.8E-20 124.9 5.8 79 255-333 14-93 (95)
179 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.8E-15 2.3E-19 135.4 9.5 85 253-337 69-154 (165)
180 1oo0_B CG8781-PA, drosophila Y 99.6 2E-14 6.7E-19 122.7 11.7 84 357-440 23-107 (110)
181 1p27_B RNA-binding protein 8A; 99.6 1.4E-14 4.6E-19 122.9 10.5 83 358-440 21-104 (106)
182 1whx_A Hypothetical protein ri 99.6 7.2E-15 2.5E-19 125.4 8.8 81 551-642 9-89 (111)
183 2dng_A Eukaryotic translation 99.6 3.7E-14 1.3E-18 119.4 13.1 84 356-441 11-95 (103)
184 1h2v_Z 20 kDa nuclear CAP bind 99.6 8.4E-15 2.9E-19 133.6 9.8 84 253-336 36-120 (156)
185 2a3j_A U1 small nuclear ribonu 99.6 1.2E-14 4.2E-19 126.5 10.3 85 549-639 26-112 (127)
186 2dgx_A KIAA0430 protein; RRM d 99.6 7E-15 2.4E-19 122.1 8.4 78 255-335 8-90 (96)
187 2cpf_A RNA binding motif prote 99.6 1.5E-14 5.1E-19 120.7 10.4 84 358-441 3-90 (98)
188 2la6_A RNA-binding protein FUS 99.6 1.6E-14 5.5E-19 120.7 10.5 82 356-437 9-99 (99)
189 2dgw_A Probable RNA-binding pr 99.6 3.6E-14 1.2E-18 116.6 12.4 82 357-440 7-88 (91)
190 2jrs_A RNA-binding protein 39; 99.6 1.8E-14 6.1E-19 122.3 10.6 84 357-440 23-107 (108)
191 2hgl_A HNRPF protein, heteroge 99.5 4.3E-15 1.5E-19 130.9 6.9 82 254-336 42-126 (136)
192 2dgx_A KIAA0430 protein; RRM d 99.5 2.9E-14 9.9E-19 118.3 11.5 81 358-440 7-91 (96)
193 2krb_A Eukaryotic translation 99.5 4.7E-15 1.6E-19 118.9 6.4 71 257-329 2-80 (81)
194 1sjq_A Polypyrimidine tract-bi 99.5 1.1E-14 3.9E-19 121.0 8.9 79 358-441 14-94 (105)
195 1wex_A Hypothetical protein (r 99.5 3E-14 1E-18 119.5 11.4 80 357-441 12-93 (104)
196 2dhg_A TRNA selenocysteine ass 99.5 1.7E-14 5.9E-19 121.8 10.1 84 358-441 7-92 (104)
197 1wi8_A EIF-4B, eukaryotic tran 99.5 5E-14 1.7E-18 118.9 12.8 83 357-441 12-96 (104)
198 1why_A Hypothetical protein ri 99.5 1.8E-14 6.1E-19 119.9 9.9 77 550-637 15-93 (97)
199 2kt5_A RNA and export factor-b 99.5 2.1E-14 7E-19 125.5 10.6 82 253-335 32-114 (124)
200 2lmi_A GRSF-1, G-rich sequence 99.5 3.2E-15 1.1E-19 126.8 5.2 83 253-336 8-93 (107)
201 2dgv_A HnRNP M, heterogeneous 99.5 2.2E-14 7.5E-19 118.1 10.2 83 358-441 6-88 (92)
202 2cpe_A RNA-binding protein EWS 99.5 3.8E-14 1.3E-18 121.6 12.0 86 356-441 11-105 (113)
203 2hgm_A HNRPF protein, heteroge 99.5 8.9E-15 3E-19 126.7 7.9 80 254-335 40-121 (126)
204 3p5t_L Cleavage and polyadenyl 99.5 3.2E-15 1.1E-19 122.5 4.9 81 361-441 2-85 (90)
205 1wg5_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 119.5 11.7 84 356-440 11-95 (104)
206 1x5o_A RNA binding motif, sing 99.5 2E-14 6.7E-19 123.6 10.1 80 253-333 22-110 (114)
207 2cq1_A PTB-like protein L; RRM 99.5 5.4E-14 1.9E-18 117.1 12.4 80 357-441 12-93 (101)
208 3ns6_A Eukaryotic translation 99.5 4.9E-15 1.7E-19 124.0 6.1 81 359-439 5-93 (100)
209 2dgp_A Bruno-like 4, RNA bindi 99.5 2.4E-14 8.1E-19 121.4 10.4 86 356-441 9-98 (106)
210 2div_A TRNA selenocysteine ass 99.5 1.7E-14 5.9E-19 120.5 9.4 83 358-440 7-95 (99)
211 2cpi_A CCR4-NOT transcription 99.5 8.7E-15 3E-19 125.1 7.6 83 254-336 13-102 (111)
212 2cqp_A RNA-binding protein 12; 99.5 1.5E-14 5.2E-19 120.6 9.0 83 357-439 12-95 (98)
213 1s79_A Lupus LA protein; RRM, 99.5 8.4E-15 2.9E-19 122.9 7.3 81 358-439 9-89 (103)
214 2xs2_A Deleted in azoospermia- 99.5 9.3E-15 3.2E-19 122.9 7.6 81 254-336 7-87 (102)
215 4a8x_A RNA-binding protein wit 99.5 2.3E-14 7.8E-19 117.0 9.7 82 359-440 3-86 (88)
216 2dh8_A DAZ-associated protein 99.5 2.4E-14 8.4E-19 121.0 10.1 87 354-441 10-97 (105)
217 1x4g_A Nucleolysin TIAR; struc 99.5 2.6E-14 9E-19 121.7 10.4 85 549-644 22-106 (109)
218 2fc9_A NCL protein; structure 99.5 8.2E-14 2.8E-18 116.9 13.1 83 356-441 11-93 (101)
219 1x4a_A Splicing factor, argini 99.5 8.5E-14 2.9E-18 118.5 13.4 84 356-441 18-101 (109)
220 2xnq_A Nuclear polyadenylated 99.5 3.9E-14 1.3E-18 117.7 10.9 75 549-636 19-94 (97)
221 2kxn_B Transformer-2 protein h 99.5 1.7E-14 5.7E-19 126.6 9.1 85 356-440 42-127 (129)
222 2err_A Ataxin-2-binding protei 99.5 2.3E-14 7.8E-19 122.0 9.6 80 549-638 26-108 (109)
223 2jvr_A Nucleolar protein 3; RN 99.5 2.2E-14 7.4E-19 121.6 9.4 78 550-637 26-105 (111)
224 3q2s_C Cleavage and polyadenyl 99.5 1.6E-14 5.5E-19 139.9 9.8 81 255-335 67-150 (229)
225 2dnq_A RNA-binding protein 4B; 99.5 3.5E-14 1.2E-18 116.4 10.4 80 550-642 6-85 (90)
226 3s7r_A Heterogeneous nuclear r 99.5 4.8E-14 1.7E-18 114.7 11.1 78 358-436 9-87 (87)
227 2lea_A Serine/arginine-rich sp 99.5 5.9E-15 2E-19 130.7 6.1 82 254-335 45-127 (135)
228 3ex7_B RNA-binding protein 8A; 99.5 3E-14 1E-18 124.9 10.4 85 357-441 19-104 (126)
229 1x4a_A Splicing factor, argini 99.5 7.5E-14 2.6E-18 118.9 12.6 79 550-638 20-100 (109)
230 2jvo_A Nucleolar protein 3; nu 99.5 2.7E-14 9.1E-19 121.2 9.6 77 549-638 28-104 (108)
231 1x4d_A Matrin 3; structural ge 99.5 3.3E-14 1.1E-18 118.3 9.9 79 358-441 13-94 (102)
232 2cpj_A Non-POU domain-containi 99.5 3.8E-14 1.3E-18 118.4 10.4 81 549-640 12-92 (99)
233 2a3j_A U1 small nuclear ribonu 99.5 2.1E-14 7.1E-19 125.0 9.1 83 253-338 26-113 (127)
234 2kt5_A RNA and export factor-b 99.5 8E-14 2.7E-18 121.7 12.9 86 356-441 31-116 (124)
235 2dha_A FLJ20171 protein; RRM d 99.5 6.8E-15 2.3E-19 127.2 5.8 81 255-336 22-106 (123)
236 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.1E-14 7.3E-19 128.3 9.2 80 253-332 60-140 (140)
237 2cpy_A RNA-binding protein 12; 99.5 2.7E-14 9.3E-19 122.6 9.5 83 357-440 12-95 (114)
238 2db1_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 122.6 10.1 83 356-439 13-98 (118)
239 1x4c_A Splicing factor, argini 99.5 9E-14 3.1E-18 118.1 12.5 80 356-441 11-95 (108)
240 1fj7_A Nucleolin RBD1, protein 99.5 3.1E-15 1.1E-19 125.6 3.3 81 254-335 15-95 (101)
241 1x4c_A Splicing factor, argini 99.5 4.5E-14 1.5E-18 120.0 10.5 76 551-638 14-94 (108)
242 3ucg_A Polyadenylate-binding p 99.5 3.9E-14 1.3E-18 115.8 9.7 80 360-440 6-86 (89)
243 2hgl_A HNRPF protein, heteroge 99.5 2.1E-14 7.1E-19 126.5 8.5 83 356-439 40-125 (136)
244 2cqg_A TDP-43, TAR DNA-binding 99.5 1.4E-13 4.7E-18 115.9 13.3 86 355-442 10-96 (103)
245 2diu_A KIAA0430 protein; struc 99.5 3.2E-14 1.1E-18 113.5 8.7 77 551-638 7-85 (96)
246 2ek1_A RNA-binding protein 12; 99.5 1.3E-14 4.3E-19 120.4 6.7 81 358-438 13-94 (95)
247 3n9u_C Cleavage and polyadenyl 99.5 4.1E-14 1.4E-18 128.3 10.5 81 359-439 54-137 (156)
248 2ad9_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 120.5 10.2 79 358-441 29-109 (119)
249 3lqv_A PRE-mRNA branch site pr 99.5 6E-14 2E-18 120.8 11.0 81 550-640 6-88 (115)
250 2cpd_A Apobec-1 stimulating pr 99.5 1.1E-13 3.9E-18 115.5 12.3 80 550-642 13-94 (99)
251 2dgu_A Heterogeneous nuclear r 99.5 7.6E-14 2.6E-18 117.5 11.2 77 550-639 9-85 (103)
252 1wez_A HnRNP H', FTP-3, hetero 99.5 3.8E-14 1.3E-18 118.8 9.2 83 356-440 11-93 (102)
253 2j8a_A Histone-lysine N-methyl 99.5 3.5E-14 1.2E-18 119.9 8.9 76 257-332 3-93 (136)
254 2err_A Ataxin-2-binding protei 99.5 4.1E-14 1.4E-18 120.4 9.6 83 356-439 25-107 (109)
255 1wf1_A RNA-binding protein RAL 99.5 9.3E-14 3.2E-18 118.5 11.8 76 551-639 26-102 (110)
256 2cpi_A CCR4-NOT transcription 99.5 5.9E-14 2E-18 119.9 10.5 84 357-440 12-102 (111)
257 3zzy_A Polypyrimidine tract-bi 99.5 6.9E-14 2.3E-18 120.9 10.9 80 554-643 30-112 (130)
258 2la4_A Nuclear and cytoplasmic 99.5 1.8E-14 6.3E-19 120.8 6.9 76 550-636 25-100 (101)
259 2dnp_A RNA-binding protein 14; 99.5 6.6E-14 2.3E-18 114.7 10.0 75 550-637 7-81 (90)
260 1u6f_A Tcubp1, RNA-binding pro 99.5 1.5E-13 5.3E-18 122.5 13.2 87 355-441 37-124 (139)
261 2nlw_A Eukaryotic translation 99.5 4.1E-14 1.4E-18 119.5 8.9 82 358-440 13-101 (105)
262 2ytc_A PRE-mRNA-splicing facto 99.5 5E-14 1.7E-18 114.1 9.1 74 550-634 10-84 (85)
263 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.2E-13 4.1E-18 123.4 12.5 83 354-436 57-140 (140)
264 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.1E-13 3.9E-18 126.0 12.4 84 358-441 37-121 (156)
265 2cpx_A Hypothetical protein FL 99.5 1.3E-14 4.3E-19 125.1 5.6 84 253-336 22-106 (115)
266 2dgu_A Heterogeneous nuclear r 99.5 2.6E-13 8.8E-18 114.2 13.4 79 357-442 8-86 (103)
267 2dnn_A RNA-binding protein 12; 99.5 6.8E-14 2.3E-18 118.3 9.8 78 359-438 15-92 (109)
268 2cq2_A Hypothetical protein LO 99.5 4.7E-14 1.6E-18 119.0 8.7 79 549-638 22-107 (114)
269 2e5j_A Methenyltetrahydrofolat 99.5 6.3E-14 2.1E-18 116.6 9.4 78 253-335 16-94 (97)
270 1why_A Hypothetical protein ri 99.5 1.2E-13 4.1E-18 114.9 11.1 79 357-440 14-94 (97)
271 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.4E-14 8.3E-19 119.8 6.9 81 357-439 16-98 (100)
272 1nu4_A U1A RNA binding domain; 99.5 5.6E-14 1.9E-18 116.9 8.8 79 550-638 6-90 (97)
273 2mss_A Protein (musashi1); RNA 99.5 2.4E-14 8.1E-19 113.0 6.2 74 362-436 1-75 (75)
274 2m2b_A RNA-binding protein 10; 99.5 6E-14 2.1E-18 123.7 9.5 85 356-441 19-110 (131)
275 2hgn_A Heterogeneous nuclear r 99.5 6.5E-15 2.2E-19 130.1 3.2 79 255-335 45-123 (139)
276 2rs2_A Musashi-1, RNA-binding 99.5 1.2E-13 4.1E-18 117.4 10.9 82 358-440 23-105 (109)
277 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.8E-18 112.0 10.2 76 357-437 9-85 (85)
278 1x5o_A RNA binding motif, sing 99.5 1.9E-13 6.5E-18 117.4 12.1 83 357-439 22-112 (114)
279 2dgt_A RNA-binding protein 30; 99.5 1.5E-13 5.2E-18 113.0 11.0 77 549-638 7-83 (92)
280 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-13 3.9E-18 115.0 10.3 78 550-637 17-94 (97)
281 2f3j_A RNA and export factor b 99.5 5.9E-14 2E-18 130.2 9.3 83 254-337 86-169 (177)
282 2fc9_A NCL protein; structure 99.5 4.9E-14 1.7E-18 118.3 7.9 80 253-336 12-92 (101)
283 2cq4_A RNA binding motif prote 99.5 6.2E-14 2.1E-18 120.5 8.8 81 359-440 24-105 (114)
284 2hvz_A Splicing factor, argini 99.5 4.4E-14 1.5E-18 118.5 7.6 76 553-638 1-76 (101)
285 1x5p_A Negative elongation fac 99.5 2.7E-13 9.4E-18 112.7 12.4 83 550-645 13-95 (97)
286 1p1t_A Cleavage stimulation fa 99.5 3.7E-14 1.3E-18 119.7 7.1 82 359-440 7-89 (104)
287 2fc8_A NCL protein; structure 99.5 5.7E-14 1.9E-18 118.1 8.2 81 253-336 12-93 (102)
288 3pgw_S U1-70K; protein-RNA com 99.5 9E-14 3.1E-18 147.5 11.5 85 254-338 100-185 (437)
289 2cpj_A Non-POU domain-containi 99.5 1.5E-13 5.1E-18 114.8 10.5 81 356-441 11-91 (99)
290 2e5g_A U6 snRNA-specific termi 99.5 8.8E-14 3E-18 115.0 9.0 77 254-335 6-82 (94)
291 1x4e_A RNA binding motif, sing 99.5 1.9E-14 6.4E-19 116.6 4.7 79 358-436 3-82 (85)
292 2kvi_A Nuclear polyadenylated 99.5 5.8E-14 2E-18 116.5 7.8 76 550-638 8-84 (96)
293 1wg1_A KIAA1579 protein, homol 99.5 8.4E-14 2.9E-18 113.5 8.6 82 551-644 4-85 (88)
294 2dnq_A RNA-binding protein 4B; 99.5 1.6E-13 5.6E-18 112.3 10.3 77 358-441 6-82 (90)
295 1x4b_A Heterogeneous nuclear r 99.5 1.2E-13 4.3E-18 118.9 10.1 82 359-441 26-108 (116)
296 2dis_A Unnamed protein product 99.5 1.3E-13 4.3E-18 117.5 10.0 84 358-441 6-94 (109)
297 2krb_A Eukaryotic translation 99.5 3E-14 1E-18 114.2 5.7 72 361-433 2-80 (81)
298 2dgt_A RNA-binding protein 30; 99.5 3.7E-13 1.3E-17 110.7 12.5 78 357-441 7-84 (92)
299 2lcw_A RNA-binding protein FUS 99.2 3.7E-15 1.3E-19 128.6 0.0 84 254-337 5-97 (116)
300 2e5i_A Heterogeneous nuclear r 99.5 4.6E-13 1.6E-17 115.3 13.1 79 551-640 22-105 (124)
301 2diu_A KIAA0430 protein; struc 99.5 1.3E-13 4.5E-18 110.0 8.9 75 255-339 7-88 (96)
302 2hgn_A Heterogeneous nuclear r 99.5 1.7E-14 5.8E-19 127.5 4.1 81 358-440 44-124 (139)
303 2jvr_A Nucleolar protein 3; RN 99.5 1E-13 3.5E-18 117.4 8.7 79 358-439 26-105 (111)
304 1nu4_A U1A RNA binding domain; 99.5 6.7E-14 2.3E-18 116.4 7.5 81 358-440 6-90 (97)
305 3zzy_A Polypyrimidine tract-bi 99.5 3.5E-13 1.2E-17 116.4 11.9 91 359-453 27-120 (130)
306 2cqh_A IGF-II mRNA-binding pro 99.5 8.8E-14 3E-18 114.7 7.8 80 550-641 6-87 (93)
307 1x4f_A Matrin 3; structural ge 99.5 2E-13 6.8E-18 115.2 10.0 80 357-441 22-104 (112)
308 2cpx_A Hypothetical protein FL 99.5 1.7E-13 5.9E-18 117.9 9.8 87 549-645 22-113 (115)
309 1x4g_A Nucleolysin TIAR; struc 99.5 2.5E-13 8.6E-18 115.6 10.6 79 358-441 23-101 (109)
310 2dnp_A RNA-binding protein 14; 99.5 3.7E-13 1.2E-17 110.2 11.1 78 357-441 6-83 (90)
311 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.2E-14 1.4E-18 112.1 5.2 75 361-436 1-76 (77)
312 2jvo_A Nucleolar protein 3; nu 99.5 1.8E-13 6.3E-18 116.0 9.3 77 357-440 28-104 (108)
313 2fc8_A NCL protein; structure 99.5 5.2E-13 1.8E-17 112.1 12.0 83 356-441 11-94 (102)
314 2ki2_A SS-DNA binding protein 99.5 2.4E-14 8.1E-19 117.4 3.7 80 361-441 2-82 (90)
315 2jwn_A Embryonic polyadenylate 99.5 2.3E-13 7.7E-18 118.9 10.1 80 360-440 36-116 (124)
316 2xnq_A Nuclear polyadenylated 99.5 3.7E-13 1.3E-17 111.7 10.9 76 357-439 19-95 (97)
317 1wf1_A RNA-binding protein RAL 99.4 2E-13 7E-18 116.3 9.1 75 253-335 24-100 (110)
318 2lmi_A GRSF-1, G-rich sequence 99.4 6.8E-14 2.3E-18 118.6 6.0 81 358-439 9-92 (107)
319 1wel_A RNA-binding protein 12; 99.4 1.5E-13 5E-18 120.0 8.1 82 357-439 22-104 (124)
320 1fjc_A Nucleolin RBD2, protein 99.4 1.3E-13 4.5E-18 114.4 7.4 79 549-637 13-91 (96)
321 1whx_A Hypothetical protein ri 99.4 2.2E-13 7.4E-18 116.2 8.8 76 360-440 10-85 (111)
322 2e44_A Insulin-like growth fac 99.4 3.8E-13 1.3E-17 111.6 10.1 78 551-638 14-93 (96)
323 2e5i_A Heterogeneous nuclear r 99.4 8E-13 2.7E-17 113.8 12.3 79 361-444 26-107 (124)
324 2f3j_A RNA and export factor b 99.4 2.4E-13 8.3E-18 126.0 9.5 84 358-441 86-169 (177)
325 2la4_A Nuclear and cytoplasmic 99.4 2E-13 6.9E-18 114.4 8.0 75 359-438 26-100 (101)
326 1fjc_A Nucleolin RBD2, protein 99.4 2.8E-13 9.7E-18 112.4 8.8 79 358-440 14-92 (96)
327 2dnl_A Cytoplasmic polyadenyla 99.4 1.8E-13 6E-18 117.5 7.7 75 254-331 6-84 (114)
328 2e44_A Insulin-like growth fac 99.4 2.1E-13 7.3E-18 113.1 7.9 78 254-335 13-92 (96)
329 2dha_A FLJ20171 protein; RRM d 99.4 1.2E-13 4.1E-18 119.3 6.5 81 358-439 21-105 (123)
330 1sjr_A Polypyrimidine tract-bi 99.4 3.9E-13 1.3E-17 120.7 10.0 77 553-639 47-126 (164)
331 2hgm_A HNRPF protein, heteroge 99.4 2.3E-13 7.9E-18 117.8 7.7 81 357-439 39-121 (126)
332 2cpd_A Apobec-1 stimulating pr 99.4 2.5E-12 8.6E-17 107.2 13.7 79 356-441 11-91 (99)
333 3egn_A RNA-binding protein 40; 99.4 6.1E-14 2.1E-18 125.8 4.0 83 253-335 42-130 (143)
334 1sjr_A Polypyrimidine tract-bi 99.4 8.2E-13 2.8E-17 118.6 10.8 85 358-445 44-130 (164)
335 3beg_B Splicing factor, argini 99.4 2.9E-13 1E-17 116.2 7.6 74 551-636 15-93 (115)
336 3q2s_C Cleavage and polyadenyl 99.4 2.5E-13 8.5E-18 131.5 8.0 81 359-439 67-150 (229)
337 3beg_B Splicing factor, argini 99.4 1.9E-13 6.3E-18 117.5 6.3 72 255-333 15-92 (115)
338 1iqt_A AUF1, heterogeneous nuc 99.4 9.3E-14 3.2E-18 109.5 3.9 74 362-436 1-75 (75)
339 2cqh_A IGF-II mRNA-binding pro 99.4 5E-13 1.7E-17 110.1 8.5 78 358-441 6-85 (93)
340 1x5p_A Negative elongation fac 99.4 2.8E-12 9.5E-17 106.5 13.1 78 357-441 12-89 (97)
341 2kvi_A Nuclear polyadenylated 99.4 4.1E-13 1.4E-17 111.3 7.9 77 358-441 8-85 (96)
342 2cq2_A Hypothetical protein LO 99.4 8E-13 2.7E-17 111.5 9.7 78 358-440 23-107 (114)
343 2xs2_A Deleted in azoospermia- 99.4 3E-13 1E-17 113.6 6.8 81 359-441 8-88 (102)
344 3d2w_A TAR DNA-binding protein 99.4 8.9E-13 3.1E-17 107.4 9.4 76 549-638 8-85 (89)
345 3d2w_A TAR DNA-binding protein 99.4 2.6E-13 8.8E-18 110.6 6.1 75 253-335 8-84 (89)
346 2e5g_A U6 snRNA-specific termi 99.4 1.7E-12 5.8E-17 107.1 10.9 79 358-441 6-84 (94)
347 2bz2_A Negative elongation fac 99.4 6.5E-13 2.2E-17 114.9 8.5 79 550-641 37-115 (121)
348 1fj7_A Nucleolin RBD1, protein 99.4 1E-13 3.6E-18 116.2 3.3 81 358-440 15-96 (101)
349 1wg1_A KIAA1579 protein, homol 99.4 1.4E-12 4.7E-17 106.2 9.7 76 359-440 4-79 (88)
350 3egn_A RNA-binding protein 40; 99.4 3.3E-13 1.1E-17 120.9 5.8 81 358-440 43-131 (143)
351 2pe8_A Splicing factor 45; RRM 99.4 2.5E-12 8.6E-17 107.9 10.3 81 358-438 6-93 (105)
352 2j8a_A Histone-lysine N-methyl 99.4 1.1E-12 3.6E-17 110.9 7.8 78 361-438 3-95 (136)
353 1wf0_A TDP-43, TAR DNA-binding 99.4 7.1E-13 2.4E-17 108.0 6.4 83 551-645 4-86 (88)
354 2lcw_A RNA-binding protein FUS 99.0 6.1E-14 2.1E-18 120.9 0.0 84 358-441 5-97 (116)
355 2hzc_A Splicing factor U2AF 65 99.4 1.8E-12 6E-17 105.4 8.6 71 551-633 5-86 (87)
356 2hzc_A Splicing factor U2AF 65 99.3 2E-12 6.9E-17 105.0 8.4 72 358-435 4-86 (87)
357 2voo_A Lupus LA protein; RNA-b 99.3 1.7E-12 6E-17 122.1 8.9 78 255-333 108-185 (193)
358 1wf0_A TDP-43, TAR DNA-binding 99.3 4.6E-13 1.6E-17 109.1 4.2 76 255-336 4-79 (88)
359 2dnl_A Cytoplasmic polyadenyla 99.3 1.1E-11 3.6E-16 106.3 11.0 77 358-437 6-86 (114)
360 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.1E-16 102.4 10.2 91 551-646 9-99 (100)
361 2voo_A Lupus LA protein; RNA-b 99.3 8.3E-12 2.8E-16 117.5 10.4 80 360-440 109-188 (193)
362 3u1l_A PRE-mRNA-splicing facto 99.3 4.1E-12 1.4E-16 122.1 8.2 86 550-638 132-230 (240)
363 3v4m_A Splicing factor U2AF 65 99.3 1.1E-11 3.8E-16 104.0 9.4 81 358-438 3-96 (105)
364 2bz2_A Negative elongation fac 99.3 8.6E-12 3E-16 107.8 8.5 77 358-441 37-113 (121)
365 2dnr_A Synaptojanin-1; RRM dom 99.3 2.1E-11 7.2E-16 96.4 9.6 83 549-637 4-86 (91)
366 2dit_A HIV TAT specific factor 99.3 5.7E-11 2E-15 101.3 12.5 83 356-441 11-104 (112)
367 3ue2_A Poly(U)-binding-splicin 99.2 3.3E-11 1.1E-15 103.1 9.3 80 359-438 19-108 (118)
368 3u1l_A PRE-mRNA-splicing facto 99.2 1.5E-11 5.3E-16 118.1 7.7 79 357-440 131-230 (240)
369 1jmt_A Splicing factor U2AF 35 99.2 7.3E-12 2.5E-16 105.0 4.7 72 365-436 20-103 (104)
370 3tht_A Alkylated DNA repair pr 99.2 2.1E-11 7.1E-16 123.7 8.9 81 549-638 15-100 (345)
371 3dxb_A Thioredoxin N-terminall 99.2 3.5E-11 1.2E-15 116.4 9.5 88 550-642 122-218 (222)
372 3s6e_A RNA-binding protein 39; 99.1 2E-10 7E-15 97.4 10.2 78 358-438 5-92 (114)
373 1ufw_A Synaptojanin 2; RNP dom 99.1 2.6E-10 8.8E-15 90.5 7.1 84 547-636 10-94 (95)
374 2d9o_A DNAJ (HSP40) homolog, s 99.0 2.1E-09 7.2E-14 88.8 10.6 65 370-440 27-91 (100)
375 3tht_A Alkylated DNA repair pr 99.0 1.5E-09 5E-14 110.1 10.2 76 357-437 15-97 (345)
376 1owx_A Lupus LA protein, SS-B, 99.0 1.6E-09 5.4E-14 91.8 8.3 83 550-643 16-102 (121)
377 1owx_A Lupus LA protein, SS-B, 98.8 3.2E-08 1.1E-12 83.8 9.7 77 356-437 14-94 (121)
378 2dnr_A Synaptojanin-1; RRM dom 98.6 1.1E-07 3.8E-12 75.1 8.3 73 359-439 6-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.5 3.8E-07 1.3E-11 87.8 8.8 79 360-438 124-212 (222)
380 1ufw_A Synaptojanin 2; RNP dom 98.4 4.2E-07 1.4E-11 72.2 6.0 70 255-332 14-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.4 1.5E-06 5.3E-11 70.1 8.9 74 551-635 20-98 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.3 2.1E-06 7.3E-11 69.3 8.5 72 360-436 21-97 (117)
383 1wey_A Calcipressin 1; structu 98.1 5.4E-06 1.8E-10 67.0 7.3 81 552-638 5-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.0 4.2E-05 1.4E-09 61.4 9.2 88 255-373 7-99 (104)
385 3p3d_A Nucleoporin 53; structu 97.5 6.3E-05 2.2E-09 63.4 3.8 81 552-644 7-106 (132)
386 1wwh_A Nucleoporin 35, nucleop 97.4 0.0005 1.7E-08 57.2 8.3 72 551-635 23-95 (119)
387 1wey_A Calcipressin 1; structu 97.1 0.0011 3.6E-08 53.6 6.3 73 360-437 5-82 (104)
388 1uw4_A UPF3X; nonsense mediate 96.8 0.0072 2.5E-07 48.0 9.4 78 361-438 2-87 (91)
389 1whv_A Poly(A)-specific ribonu 96.8 0.0066 2.3E-07 48.1 8.6 56 358-421 14-69 (100)
390 1wwh_A Nucleoporin 35, nucleop 96.7 0.0037 1.3E-07 52.0 7.1 72 255-333 23-95 (119)
391 2dhx_A Poly (ADP-ribose) polym 96.7 0.031 1.1E-06 44.9 12.1 73 359-439 7-84 (104)
392 1whv_A Poly(A)-specific ribonu 96.7 0.0076 2.6E-07 47.7 8.1 56 551-620 15-70 (100)
393 1uw4_A UPF3X; nonsense mediate 96.6 0.0058 2E-07 48.5 7.4 68 257-324 2-72 (91)
394 3ctr_A Poly(A)-specific ribonu 96.3 0.0061 2.1E-07 48.5 5.5 54 553-620 7-60 (101)
395 3ctr_A Poly(A)-specific ribonu 96.0 0.0084 2.9E-07 47.7 4.8 54 361-422 7-60 (101)
396 2l08_A Regulator of nonsense t 95.8 0.038 1.3E-06 44.1 8.1 79 359-437 8-94 (97)
397 3p3d_A Nucleoporin 53; structu 94.5 0.023 7.9E-07 47.9 3.4 78 257-335 8-99 (132)
398 2l08_A Regulator of nonsense t 94.1 0.022 7.6E-07 45.4 2.3 69 255-323 8-79 (97)
399 3pq1_A Poly(A) RNA polymerase; 93.7 0.044 1.5E-06 57.4 4.2 64 256-325 53-116 (464)
400 3pq1_A Poly(A) RNA polymerase; 88.2 0.25 8.5E-06 51.7 3.3 57 551-618 52-108 (464)
401 3d45_A Poly(A)-specific ribonu 77.7 6.2 0.00021 42.0 8.8 56 551-620 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 72.6 9.5 0.00033 40.5 8.6 55 360-422 440-494 (507)
403 4eyt_A Telomerase associated p 55.9 66 0.0022 24.5 8.1 80 551-643 11-98 (129)
404 2fiu_A Conserved hypothetical 43.0 79 0.0027 24.9 7.2 60 554-617 6-72 (99)
405 4eyt_A Telomerase associated p 41.3 1.2E+02 0.004 23.2 9.0 55 360-421 12-66 (129)
406 2okq_A Hypothetical protein YB 37.3 58 0.002 27.4 5.5 76 556-631 27-132 (141)
407 3lo3_A Uncharacterized conserv 33.4 1.4E+02 0.0047 23.2 7.1 53 565-617 12-71 (94)
408 2g0c_A ATP-dependent RNA helic 29.9 27 0.00093 25.9 2.3 54 577-634 16-74 (76)
409 2f06_A Conserved hypothetical 28.1 1.4E+02 0.0047 25.0 6.9 48 576-624 86-135 (144)
410 3lpe_A Putative transcription 27.8 1.2E+02 0.0039 23.6 5.7 47 577-623 27-74 (92)
411 2g0c_A ATP-dependent RNA helic 24.2 1.7E+02 0.0057 21.3 5.9 66 258-332 2-74 (76)
412 4e8u_A Putative uncharacterize 23.1 1.3E+02 0.0045 26.4 5.6 57 257-316 13-81 (172)
413 3bam_A R. bamhi, protein (rest 21.9 95 0.0033 27.3 4.3 49 585-633 89-141 (213)
414 2e7g_A Putative ribosome-bindi 20.7 1.8E+02 0.0062 24.1 5.9 35 586-620 43-79 (129)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.1e-40 Score=334.06 Aligned_cols=246 Identities=16% Similarity=0.260 Sum_probs=209.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
....++|||+|||+.+|+++|.++|..||.|..|.|+.+..+ ++|||||+|.+.++|..||+++|..|.|+.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 446689999999999999999999999999999999998754 589999999999999999999999999999999764
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCCCCCcceEEEEEeCCH
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARL 411 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~g~~~g~afVef~~~ 411 (647)
...+|||+|||+.+++++|.++|..|| .|..|.|+.+..|.++|||||+|.+.
T Consensus 116 --------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~ 169 (292)
T 2ghp_A 116 --------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 169 (292)
T ss_dssp --------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSH
T ss_pred --------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCH
Confidence 268999999999999999999999999 99999999987788899999999999
Q ss_pred HHHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCC
Q 006398 412 EDARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTP 491 (647)
Q Consensus 412 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (647)
++|.+|+..|+|..|.|+.|.|.++.+.......
T Consensus 170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------- 203 (292)
T 2ghp_A 170 EDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---------------------------------------------- 203 (292)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC----------------------------------------------------
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----------------------------------------------
Confidence 9999999999999999999999997654310000
Q ss_pred cccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCC-CCchh
Q 006398 492 AVNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKN-ETYEE 570 (647)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~-~~d~~ 570 (647)
.....+..+|||.|| |.. ++
T Consensus 204 ------------------------------------------------------~~~~~~~~~l~v~nl--p~~~~t--- 224 (292)
T 2ghp_A 204 ------------------------------------------------------DSATLEGREIMIRNL--STELLD--- 224 (292)
T ss_dssp ---------------------------------------------------------CCTTTEEEEEEE--CTTTCC---
T ss_pred ------------------------------------------------------cccCCCCceEEEECC--CcccCC---
Confidence 000225669999999 777 66
Q ss_pred hhhhHHHHHHHHhhhcCCeEEEEEeeC------CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 571 FDMDIKEDVEGECSKFGKLKHIFVEKD------SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 571 ~~~~~~~dl~~~F~~fG~V~~v~i~~~------~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
+++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|.+|+ .|||..|+|++|.|.|+.+.
T Consensus 225 -----~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 225 -----ENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -----HHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred -----HHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 7999999999999999999643 4799999999999999999 99999999999999998764
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.8e-39 Score=329.76 Aligned_cols=239 Identities=20% Similarity=0.270 Sum_probs=213.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+.++|||+|||+.+|+++|.++|..|| |..|.+ +.++|||||+|.+.++|..|+. |+|..|.|+.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~- 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ- 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec-
Confidence 447999999999999999999999999 999887 4678999999999999999996 9999999999999763
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
....+|||+|||+.+++++|.++|.+||.|..|.++.+ .+|.++|||||+|.+.+
T Consensus 93 ------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 93 ------------------------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp ------------------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ------------------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH
Confidence 23478999999999999999999999999999999887 58999999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCc
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPA 492 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (647)
+|..|+..|+|..|+|+.|.|.++.......
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~------------------------------------------------- 179 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAGQLTP------------------------------------------------- 179 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGGGCCT-------------------------------------------------
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-------------------------------------------------
Confidence 9999999999999999999999976532100
Q ss_pred ccCCCCCCCCcccccccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCC-Cchhh
Q 006398 493 VNSTALPLPTAPLLGAASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNE-TYEEF 571 (647)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~-~d~~~ 571 (647)
...+..+|||+|| |... +
T Consensus 180 -------------------------------------------------------~~~~~~~l~v~nl--p~~~~~---- 198 (284)
T 3smz_A 180 -------------------------------------------------------ALLHSRCLCVDRL--PPGFND---- 198 (284)
T ss_dssp -------------------------------------------------------TTTSCSEEEEECC--CTTCCC----
T ss_pred -------------------------------------------------------ccCCccEEEEecC--CcccCC----
Confidence 0124568999999 7764 5
Q ss_pred hhhHHHHHHHHhhhcCCeEEEEEeeC----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhh
Q 006398 572 DMDIKEDVEGECSKFGKLKHIFVEKD----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTY 639 (647)
Q Consensus 572 ~~~~~~dl~~~F~~fG~V~~v~i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~ 639 (647)
+++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|..|+..|||..|+|++|.|.|+.+...
T Consensus 199 ----~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 199 ----VDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ----HHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred ----HHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 7999999999999999998765 478999999999999999999999999999999999987654
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=3.3e-30 Score=249.43 Aligned_cols=168 Identities=25% Similarity=0.411 Sum_probs=151.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|+++|++||.|.+|.|+.++.||.++|||||+|.+.++|..||. +++..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999999877
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHH
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLE 412 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~ 412 (647)
........ ....+|||+|||+.+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.+
T Consensus 93 ~~~~~~~~-----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 93 QRDPSLRK-----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQE 154 (213)
T ss_dssp CCCTHHHH-----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHH
T ss_pred cccccccc-----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHH
Confidence 54333221 1246899999999999999999999999999999988743 36999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
+|.+||+.|||..|+|+.|.|.++..+
T Consensus 155 ~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 155 AAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred HHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999999999999999998764
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.4e-29 Score=241.93 Aligned_cols=174 Identities=21% Similarity=0.400 Sum_probs=150.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.+++..|.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~ 412 (647)
........ .......+|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.+
T Consensus 91 ~~~~~~~~-------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 91 SREDSQRP-------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp C------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred Cccccccc-------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 54332111 11234689999999999999999999999999999999988 48899999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
+|.+||.. +|..|+|+.|.|.++..+..
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC----
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 99999986 68999999999999988764
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=4.3e-29 Score=232.24 Aligned_cols=163 Identities=24% Similarity=0.412 Sum_probs=151.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+.++|||+|||+.+|+++|.++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++ ++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35899999999999999999999999999999999999999999999999999999999997 99999999999998875
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~ 412 (647)
+... .....+|+|.|||..+++++|+++|++||.|..+.++.+. +|.++|+|||+|.+.+
T Consensus 82 ~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 142 (168)
T 1b7f_A 82 PGGE-------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE 142 (168)
T ss_dssp CCSS-------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcc-------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 4322 1346899999999999999999999999999999999885 8889999999999999
Q ss_pred HHHHHHHHcCCceecC--eEEEEEEe
Q 006398 413 DARNALNLNGQLEIVG--RAIKVSAV 436 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g--~~i~v~~~ 436 (647)
+|.+|+..|+|..|.| +.|.|.||
T Consensus 143 ~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 143 EAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999988 99999985
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.7e-29 Score=230.37 Aligned_cols=163 Identities=22% Similarity=0.462 Sum_probs=148.9
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
++|||+|||+.+|+++|.++|++||.|..|.++.++. +.++|||||+|.+.++|..|+. ++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 7799999999999999999995 9999999999999887543
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHH
Q 006398 336 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDA 414 (647)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A 414 (647)
.. .......+|+|+|||..+++++|.++|++||.|..+.++.+ .+|.++|+|||+|.+.++|
T Consensus 80 ~~-----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 80 QQ-----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC-----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC-----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 22 12244689999999999999999999999999999999988 6889999999999999999
Q ss_pred HHHHHHcCCceecCeEEEEEEee
Q 006398 415 RNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 415 ~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.+|+..|+|..|+|+.|.|.|+.
T Consensus 143 ~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 143 QNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999975
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=8.7e-29 Score=229.86 Aligned_cols=162 Identities=23% Similarity=0.389 Sum_probs=149.1
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
.++|||+|||+.+|+++|.++|..||.|..|.++.++.+|.++|||||+|.+.++|..|++ |+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4799999999999999999999999999999999999999999999999999999999997 999999999999988754
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~ 413 (647)
.... ....+|+|+|||..+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++
T Consensus 82 ~~~~-------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 142 (167)
T 1fxl_A 82 SSAS-------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 142 (167)
T ss_dssp CCGG-------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred Cccc-------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHH
Confidence 3221 23578999999999999999999999999999999888 488899999999999999
Q ss_pred HHHHHHHcCCceecCeE--EEEEEe
Q 006398 414 ARNALNLNGQLEIVGRA--IKVSAV 436 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~--i~v~~~ 436 (647)
|.+|+..|+|..|.|+. |.|.||
T Consensus 143 A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 143 AEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999964 888875
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.9e-29 Score=233.21 Aligned_cols=164 Identities=23% Similarity=0.452 Sum_probs=150.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
++++|||+|||+.+|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..||. ++..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 45899999999999999999999999999999999999999999999999999999999998 36789999999987765
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~ 413 (647)
.... ....+|||+|||+.+++++|.++|++||.|..|.++.+ .+|.++|||||+|.+.++
T Consensus 81 ~~~~-------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 81 RDEQ-------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp HHHH-------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred hhhc-------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 4432 12578999999999999999999999999999999988 589999999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecC
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
|.+|++ ++|..|+|+.|.|.|+.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999998 8999999999999998764
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=5.9e-29 Score=241.47 Aligned_cols=178 Identities=20% Similarity=0.405 Sum_probs=152.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
.++|||+|||+.+|+++|+++|..||.|..|.|+.+..+|.++|||||+|.+.++|..||+ |++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4799999999999999999999999999999999999999999999999999999999998 999999999999977654
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLED 413 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~ 413 (647)
........... ........+|||+|||..+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++
T Consensus 108 ~~~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 108 IGQAQPIIDQL--------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CGGGHHHHHHH--------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred ccccchhhhhh--------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 32211000000 001134689999999999999999999999999999999988 588999999999999999
Q ss_pred HHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 414 ARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 414 A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
|.+|+..|+|..|+|+.|.|.|+.....
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999999987654
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=2.8e-27 Score=239.52 Aligned_cols=262 Identities=15% Similarity=0.240 Sum_probs=154.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
..+.++|||+|||+.+++++|+ ++|.+||.|..|.|+. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 4568999999999999999966 8999999999999886 577899999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCC--CccCChHHHHHHHHHhccCCCCcccCCCCCC----CcccCCCCCCCCcccc
Q 006398 433 VSAVTDQSGLQDLGANTTGDFDDDEGG--GLSLNARSRALLMQKLDRSGSATTIAGSAVT----PAVNSTALPLPTAPLL 506 (647)
Q Consensus 433 v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 506 (647)
|.|+............ .+...... .....................+...+...+. +......... ....
T Consensus 84 v~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 158 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKG---TFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM--HHMP 158 (282)
T ss_pred EEEeccCcchhhhhcC---CcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc--ccCC
Confidence 9999765431111000 00000000 0000000000000000000000000000000 0000000000 0000
Q ss_pred cccccc--cccCCCCCCCCCC-CCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHh
Q 006398 507 GAASAV--STLVPPLVQGTVP-THPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGEC 583 (647)
Q Consensus 507 ~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F 583 (647)
|..+.. ....+++...... ++.......................++++|||+|| |..++ +++|.++|
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~F 228 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNL--PEETN--------ELMLSMLF 228 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCC--CCcCC--------HHHHHHHH
Confidence 000000 0000000000000 00000000000000000011123567889999999 77766 79999999
Q ss_pred hhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeC-CeEEEEEEeC
Q 006398 584 SKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMV 635 (647)
Q Consensus 584 ~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~-gr~i~v~~~~ 635 (647)
+.||.|..|.|....+|+|||+|.+.++|..|+..|||..|. |++|+|+|+-
T Consensus 229 ~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 229 NQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999999998877899999999999999999999999999 9999999974
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.4e-28 Score=228.82 Aligned_cols=165 Identities=27% Similarity=0.458 Sum_probs=147.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCC--CcccEEEEEecccccHHHHHH-hcCCccC---CceEE
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSR--RSKGVGYVEFYDVMSVPMAIA-LSGQPLL---GQPVM 328 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg--~~~g~afV~f~~~~~a~~al~-~~g~~~~---g~~i~ 328 (647)
++++|||+|||+.+|+++|.++|.+||.|..|.|+.+..+| .++|||||+|.+.++|..|++ |++..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35799999999999999999999999999999999999887 899999999999999999997 9998776 57777
Q ss_pred EccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEe
Q 006398 329 VKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQF 408 (647)
Q Consensus 329 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef 408 (647)
+.++...... .....+|||+|||+.+++++|+++|++||.|..|.++.+.+|.++|||||+|
T Consensus 82 ~~~~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f 143 (175)
T 3nmr_A 82 MKPADSEKNN------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 143 (175)
T ss_dssp EEECGGGCCS------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEE
T ss_pred Eccccccccc------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEE
Confidence 7765433221 1236789999999999999999999999999999999988899999999999
Q ss_pred CCHHHHHHHHHHcCCceec---CeEEEEEEee
Q 006398 409 ARLEDARNALNLNGQLEIV---GRAIKVSAVT 437 (647)
Q Consensus 409 ~~~~~A~~Al~~l~g~~~~---g~~i~v~~~~ 437 (647)
.+.++|.+|+..|||..+. |+.|.|.||.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 144 TTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999998776 4999999973
No 12
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=3.4e-28 Score=235.25 Aligned_cols=166 Identities=23% Similarity=0.345 Sum_probs=145.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..+++..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999999998 58999999999999999999999999999999999999986
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006398 437 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 516 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (647)
...... .
T Consensus 93 ~~~~~~---------------------------~---------------------------------------------- 99 (213)
T 4f02_A 93 QRDPSL---------------------------R---------------------------------------------- 99 (213)
T ss_dssp CCCTHH---------------------------H----------------------------------------------
T ss_pred cccccc---------------------------c----------------------------------------------
Confidence 543210 0
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee
Q 006398 517 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 596 (647)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~ 596 (647)
.....+|||+|| |..++ +++|.++|+.||.|..|.|+.
T Consensus 100 --------------------------------~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~~~i~~ 137 (213)
T 4f02_A 100 --------------------------------KSGVGNIFIKNL--DKSID--------NKALYDTFSAFGNILSCKVVC 137 (213)
T ss_dssp --------------------------------HHCTTEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEE
T ss_pred --------------------------------ccccccceECCc--ccccH--------HHHHHHHHhhcCCeEEEEeec
Confidence 002337999999 77777 799999999999999999865
Q ss_pred C---CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchh
Q 006398 597 D---SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQT 638 (647)
Q Consensus 597 ~---~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~ 638 (647)
+ ++|+|||+|.+.++|.+|+..|||..|+|++|.|.||.+..
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 4 57999999999999999999999999999999999997653
No 13
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-27 Score=220.66 Aligned_cols=161 Identities=22% Similarity=0.332 Sum_probs=143.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
++|||+|||+.+++++|.++|++||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 57999999999999999999999999999999999878899999999999999999999999999999999999965432
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCCCC
Q 006398 441 GLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPPLV 520 (647)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (647)
..
T Consensus 81 ~~------------------------------------------------------------------------------ 82 (166)
T 3md3_A 81 QS------------------------------------------------------------------------------ 82 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred CCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---
Q 006398 521 QGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--- 597 (647)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~--- 597 (647)
...++.+|||.|| |..++ +++|.++|+.||.|..+.+..+
T Consensus 83 ---------------------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~~~ 125 (166)
T 3md3_A 83 ---------------------------SSDDTFNLFVGDL--NVNVD--------DETLRNAFKDFPSYLSGHVMWDMQT 125 (166)
T ss_dssp ---------------------------CCTTCEEEEEESC--CTTCC--------HHHHHHHHTTSTTEEEEEEEECTTT
T ss_pred ---------------------------CCCCCceEEECCC--CCCCC--------HHHHHHHHhccCCeeEEEEEecCCC
Confidence 0124568999999 77777 6999999999999999999654
Q ss_pred --CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCc
Q 006398 598 --SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVP 636 (647)
Q Consensus 598 --~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~ 636 (647)
++|+|||+|.+.++|..|+..|||..|+|++|.|.|+.+
T Consensus 126 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 126 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 468999999999999999999999999999999999863
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=3.9e-28 Score=227.44 Aligned_cols=165 Identities=24% Similarity=0.382 Sum_probs=144.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
..+.++|||+|||+.+|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|..||+|+|..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 345689999999999999999999999997766 3445556788999999999999999999999999999999999887
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHH
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLE 412 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~ 412 (647)
...... ......+|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.+
T Consensus 89 ~~~~~~-----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 89 KGRDSK-----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp CCSSCS-----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHH
T ss_pred CCcccc-----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHH
Confidence 643221 12346899999999999999999999999988776 556788999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
+|.+|+..|+|..|+|+.|.|.|+.++
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999998765
No 15
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=5.2e-27 Score=218.12 Aligned_cols=158 Identities=22% Similarity=0.401 Sum_probs=142.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|++||.|..|.++.+ .+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 689999999999999999999999999999999988 5888999999999999999999999999999999999999654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
...
T Consensus 83 ~~~----------------------------------------------------------------------------- 85 (168)
T 1b7f_A 83 GGE----------------------------------------------------------------------------- 85 (168)
T ss_dssp CSS-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 321
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCC
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDS 598 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~ 598 (647)
..+..+|+|.|| |..++ +++|.++|+.||.|..+.+..+.
T Consensus 86 ------------------------------~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~ 125 (168)
T 1b7f_A 86 ------------------------------SIKDTNLYVTNL--PRTIT--------DDQLDTIFGKYGSIVQKNILRDK 125 (168)
T ss_dssp ------------------------------TTTTCEEEEESC--CTTCC--------HHHHHHHHTSSSCEEEEEEEECT
T ss_pred ------------------------------cCCCCCEEEeCC--CCCCC--------HHHHHHhhhcCCcEEEEEEEEcC
Confidence 013458999999 77777 79999999999999999997653
Q ss_pred -----CccEEEEeCChHHHHHHHHHHcCceeCC--eEEEEEEe
Q 006398 599 -----AGFVYLRFENTQSAFAAQRALHGRWFAG--KMITATFM 634 (647)
Q Consensus 599 -----~G~afV~F~~~e~A~~A~~~lnG~~~~g--r~i~v~~~ 634 (647)
+|+|||+|.+.++|..|+..|||..|.| ++|.|.||
T Consensus 126 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 126 LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5899999999999999999999999987 99999986
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=5.4e-27 Score=224.33 Aligned_cols=180 Identities=20% Similarity=0.367 Sum_probs=149.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRA----G-------KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLL 323 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~ 323 (647)
.+++|||+|||+.+|+++|.++|..| | .|..+.+ +.++|||||+|.+.++|..||.|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5555555 46789999999999999999999999999
Q ss_pred CceEEEccCcchhhhcccccc-cCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcc
Q 006398 324 GQPVMVKPSEAEKNLVQSNSS-IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCK 401 (647)
Q Consensus 324 g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~ 401 (647)
|+.|.|.++............ .................+|||+|||+.+++++|+++|++||.|..|.++.+ .+|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999887654322111110 011111122233456799999999999999999999999999999999988 489999
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 402 GFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 402 g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.+..
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999999987754
No 17
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1e-26 Score=215.90 Aligned_cols=158 Identities=30% Similarity=0.486 Sum_probs=141.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|+.||.|..|.++.+. +|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999999885 899999999999999999999999999999999999999654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 321
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 597 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~- 597 (647)
..+..+|+|.|| |..++ +++|.++|+.||.|..+.+..+
T Consensus 85 ------------------------------~~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~i~~~~ 124 (167)
T 1fxl_A 85 ------------------------------SIRDANLYVSGL--PKTMT--------QKELEQLFSQYGRIITSRILVDQ 124 (167)
T ss_dssp ------------------------------GGTTCEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEECT
T ss_pred ------------------------------cCCCCcEEECCC--CCcCC--------HHHHHHHHHhcCCEeEEEEEecC
Confidence 012347999999 77776 6999999999999999998665
Q ss_pred ----CCccEEEEeCChHHHHHHHHHHcCceeCCeE--EEEEEe
Q 006398 598 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKM--ITATFM 634 (647)
Q Consensus 598 ----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~--i~v~~~ 634 (647)
++|+|||+|.+.++|.+|+..|||..|.|+. |.|.||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 3799999999999999999999999999964 999886
No 18
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=4e-27 Score=219.86 Aligned_cols=158 Identities=22% Similarity=0.441 Sum_probs=142.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRA----G-------KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLL 323 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~ 323 (647)
+.++|||+|||+.+|+++|.++|++| | .|..+.+. .++|||||+|.+.++|..||+++|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 45899999999999999999999999 6 67777664 5689999999999999999999999999
Q ss_pred CceEEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcce
Q 006398 324 GQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKG 402 (647)
Q Consensus 324 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g 402 (647)
|+.|.|.++..... .....+|+|+|||+.+++++|+++|++||.|..|.++.+ .+|.++|
T Consensus 77 g~~i~v~~~~~~~~-------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP-------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp TEECEEECCSSCCC-------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred CceeeecCCcccCC-------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 99999987543211 123688999999999999999999999999999999998 4899999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 403 FGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 403 ~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
||||+|.+.++|.+|+..|+|..|+|+.|.|.||.
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999999999999973
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.5e-26 Score=234.34 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=156.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
...+|||+|||+.+|+++|.++|..||.|..|.++.+..+|.++|||||+|.+.++|..|+. |+|..|.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44799999999999999999999999999999999999999999999999999999999995 99999999999999886
Q ss_pred chhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCC-CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHH
Q 006398 334 AEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM-TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLE 412 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~-~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~ 412 (647)
..... .......+|||.|||+.+ ++++|+++|++||.|..|.|+.+.+|.++|+|||+|.+.+
T Consensus 174 ~~~~~----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 237 (284)
T 3smz_A 174 AGQLT----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAE 237 (284)
T ss_dssp GGGCC----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHH
T ss_pred CCCCC----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHH
Confidence 54321 112446899999999995 9999999999999999999999889999999999999999
Q ss_pred HHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 413 DARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 413 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
+|.+|+..|+|..|+|+.|.|.|+.++.
T Consensus 238 ~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred HHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 9999999999999999999999997765
No 20
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.8e-26 Score=223.90 Aligned_cols=179 Identities=24% Similarity=0.432 Sum_probs=148.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 579999999999999999999999999999999988 4888999999999999999999999999999999999987654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
.... . ........
T Consensus 108 ~~~~-------------------------~-~~~~~~~~----------------------------------------- 120 (216)
T 2qfj_A 108 IGQA-------------------------Q-PIIDQLAE----------------------------------------- 120 (216)
T ss_dssp CGGG-------------------------H-HHHHHHHH-----------------------------------------
T ss_pred cccc-------------------------c-hhhhhhhc-----------------------------------------
Confidence 3210 0 00000000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 597 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~- 597 (647)
...+..+|||.|| |..++ +++|.++|+.||.|..|.|..+
T Consensus 121 -----------------------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~ 161 (216)
T 2qfj_A 121 -----------------------------EARAFNRIYVASV--HQDLS--------DDDIKSVFEAFGKIKSATLARDP 161 (216)
T ss_dssp -----------------------------HHTTSCEEEEECC--CTTCC--------HHHHHHHHTTSSCEEEEEEEECT
T ss_pred -----------------------------ccCCCcEEEEeCC--CCcCC--------HHHHHHHHhccCCeeEEEEEecC
Confidence 0124559999999 77777 7999999999999999999765
Q ss_pred ----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhhccCC
Q 006398 598 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYEAKFP 644 (647)
Q Consensus 598 ----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~~ 644 (647)
++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.+.......|
T Consensus 162 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~~p 212 (216)
T 2qfj_A 162 TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTP 212 (216)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTTSCC
T ss_pred CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCCCCC
Confidence 37999999999999999999999999999999999998876544433
No 21
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=2.4e-26 Score=219.44 Aligned_cols=170 Identities=21% Similarity=0.377 Sum_probs=141.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 45789999999999999999999999999999999988 5788999999999999999999986 889999999999997
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006398 437 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 516 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (647)
.........
T Consensus 90 ~~~~~~~~~----------------------------------------------------------------------- 98 (196)
T 1l3k_A 90 VSREDSQRP----------------------------------------------------------------------- 98 (196)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCccccccc-----------------------------------------------------------------------
Confidence 654310000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee
Q 006398 517 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK 596 (647)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~ 596 (647)
....+..+|||.|| |..++ +++|.++|+.||.|..|.|..
T Consensus 99 ------------------------------~~~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~ 138 (196)
T 1l3k_A 99 ------------------------------GAHLTVKKIFVGGI--KEDTE--------EHHLRDYFEQYGKIEVIEIMT 138 (196)
T ss_dssp ----------------------------------CCSEEEEECC--TTTCC--------HHHHHHHHTTTSCEEEEEEEE
T ss_pred ------------------------------ccCCCcceEEEeCC--CCCCC--------HHHHHHHHhcCCCeEEEEEee
Confidence 00123468999999 77777 799999999999999999976
Q ss_pred C-----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCchhhh
Q 006398 597 D-----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQTYE 640 (647)
Q Consensus 597 ~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~~~~ 640 (647)
+ ++|+|||+|.+.++|.+|+.. +|..|+|+.|.|.|+.+....
T Consensus 139 ~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 139 DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 4 478999999999999999986 899999999999999887654
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=5.8e-26 Score=222.15 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=148.4
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+ .+++++|+++|++||.|..|.|+.+. +|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 5578999999999 99999999999999999999998873 689999999999999999999999999999999998
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccC
Q 006398 437 TDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLV 516 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (647)
............. . ... ..... .... ..+ .
T Consensus 108 ~~~~~~~~~~~~~-------~---~~~-----------~~~~~----------~~~~--~~~-----------------~ 137 (229)
T 2adc_A 108 KHQNVQLPREGQE-------D---QGL-----------TKDYG----------NSPL--HRF-----------------K 137 (229)
T ss_dssp SCCCCCCCCSSSS-------T---TTT-----------EEECT----------TCSS--CCC-----------------C
T ss_pred cCccccCcccccc-------c---ccc-----------ccccc----------cCcc--ccc-----------------C
Confidence 7654211100000 0 000 00000 0000 000 0
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcC-CeEEEEEe
Q 006398 517 PPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVE 595 (647)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG-~V~~v~i~ 595 (647)
.+ .........+++.+|||.|| |..++ +++|.++|+.|| .|..|.|.
T Consensus 138 --------------------~~--~~~~~~~~~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 138 --------------------KP--GSKNFQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp --------------------ST--TSGGGTTCCCSCSEEEEECC--CTTCC--------HHHHHHHHHTTSCCEEEEEEC
T ss_pred --------------------Cc--cccccccCCCCCCEEEEeCC--CccCC--------HHHHHHHHHHcCCCeeEEEEE
Confidence 00 00001122346789999999 77776 799999999999 99999997
Q ss_pred eCCCccEEEEeCChHHHHHHHHHHcCceeC-CeEEEEEEeCch
Q 006398 596 KDSAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMVPQ 637 (647)
Q Consensus 596 ~~~~G~afV~F~~~e~A~~A~~~lnG~~~~-gr~i~v~~~~~~ 637 (647)
..++|+|||+|.+.++|..|+..|||..|+ |++|.|.|+.+.
T Consensus 186 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 778999999999999999999999999999 999999998764
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=2.5e-26 Score=219.65 Aligned_cols=176 Identities=18% Similarity=0.254 Sum_probs=140.7
Q ss_pred CCCeEEEecCC-CCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 255 DQRTVFAYQIC-LKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp-~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
++++|||+||| +.+|+++|.++|++||.|..|.|+.+ .+|||||+|.+.++|..||+ |||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999854 47999999999999999997 9999999999999987
Q ss_pred cchhhhcccc-----cc-----cCCCCCC--------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcE--EEEEe
Q 006398 333 EAEKNLVQSN-----SS-----IAGASGG--------GTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTV--ELVQL 392 (647)
Q Consensus 333 ~~~~~~~~~~-----~~-----~~~~~~~--------~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v--~~v~i 392 (647)
.......... .. ....... .......++.+|||.|||+.+++++|+++|++||.| ..|.+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 5432111000 00 0000000 000123457899999999999999999999999998 88988
Q ss_pred ccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe----EEEEEEe
Q 006398 393 PLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR----AIKVSAV 436 (647)
Q Consensus 393 ~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~----~i~v~~~ 436 (647)
+.+. +..+|+|||+|.+.++|.+||..|||..|.|. ++.|.+|
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8765 44569999999999999999999999999886 5666654
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.1e-25 Score=227.69 Aligned_cols=178 Identities=20% Similarity=0.326 Sum_probs=145.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHH----HHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceE
Q 006398 253 ERDQRTVFAYQICLKADERDVY----EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i 327 (647)
..+.++|||+|||+.+|+++|+ ++|..||.|..|.|+. +|.++|||||+|.+.++|..||+ |||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3467899999999999999976 8999999999999885 67899999999999999999995 99999999999
Q ss_pred EEccCcchhhhccccc---------------------------c----------cCC-----------------------
Q 006398 328 MVKPSEAEKNLVQSNS---------------------------S----------IAG----------------------- 347 (647)
Q Consensus 328 ~v~~~~~~~~~~~~~~---------------------------~----------~~~----------------------- 347 (647)
.|.++........... . ..+
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 9988754332100000 0 000
Q ss_pred ---------CC---C--------------------CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC
Q 006398 348 ---------AS---G--------------------GGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD 395 (647)
Q Consensus 348 ---------~~---~--------------------~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~ 395 (647)
.. . ........+.++|||+|||..+++++|+++|++||.|..|.|+.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 00 0 000012335688999999999999999999999999999999865
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CeEEEEEEee
Q 006398 396 ETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVT 437 (647)
Q Consensus 396 ~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~ 437 (647)
. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 243 ~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 2 589999999999999999999999999 9999999975
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=4.4e-26 Score=223.00 Aligned_cols=177 Identities=16% Similarity=0.271 Sum_probs=145.1
Q ss_pred CCCCeEEEecCCC-CCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 254 RDQRTVFAYQICL-KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 254 ~~~~~v~v~~Lp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
.++++|||+|||+ .+|+++|.++|+.||.|..|.|+.++ +|||||+|.+.++|..||+ |+|..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4568999999999 99999999999999999999999765 7899999999999999997 999999999999988
Q ss_pred Ccchhhhccccc--------ccCC--------CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEecc
Q 006398 332 SEAEKNLVQSNS--------SIAG--------ASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPL 394 (647)
Q Consensus 332 ~~~~~~~~~~~~--------~~~~--------~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~ 394 (647)
+........... .... ...........+..+|||+|||..+++++|+++|.+|| .|..|.|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 764321110000 0000 00000011234579999999999999999999999999 999999865
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHcCCceec-CeEEEEEEeecC
Q 006398 395 DETGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVTDQ 439 (647)
Q Consensus 395 ~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~~~ 439 (647)
. .+|||||+|.+.++|.+|+..|+|..|+ |+.|.|.|+...
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 3789999999999999999999999999 999999998753
No 26
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=4.1e-26 Score=232.17 Aligned_cols=171 Identities=19% Similarity=0.306 Sum_probs=145.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
..++|||+|||+.+|+++|.++|..|| .|..|.++.+.. |.++|||||+|.+.++|..|+. |+|..|.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 999999998886 7899999999999999999998 9999999999999987
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEeccCCC--CCcceEEEEEeC
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDET--GHCKGFGFVQFA 409 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~--g~~~g~afVef~ 409 (647)
.+....... ........+|||+|||+. +++++|+++|++||.|..|.|+.+.. |.++|||||+|.
T Consensus 195 ~~~~~~~~~------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 195 NPLEKSKRT------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CCC---------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCCcccccc------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 654432211 112345789999999999 99999999999999999999999865 999999999999
Q ss_pred CHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 410 RLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 410 ~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
+.++|.+|+ .|||..|+|+.|.|.|+..+
T Consensus 263 ~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999999 99999999999999998765
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=6.8e-26 Score=212.02 Aligned_cols=160 Identities=23% Similarity=0.361 Sum_probs=136.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CC--CcceEEEEEeCCHHHHHHHHHHcCCceec---CeEEEE
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TG--HCKGFGFVQFARLEDARNALNLNGQLEIV---GRAIKV 433 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g--~~~g~afVef~~~~~A~~Al~~l~g~~~~---g~~i~v 433 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++ .++|||||+|.+.++|.+|+..|+|..+. ++.+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5899999999999999999999999999999999885 43 78999999999999999999999998765 456666
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCccccccccccc
Q 006398 434 SAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVS 513 (647)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (647)
.++.....
T Consensus 83 ~~~~~~~~------------------------------------------------------------------------ 90 (175)
T 3nmr_A 83 KPADSEKN------------------------------------------------------------------------ 90 (175)
T ss_dssp EECGGGCC------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 66433220
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEE
Q 006398 514 TLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIF 593 (647)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~ 593 (647)
...+..+|||+|| |..++ +++|.++|+.||.|..|.
T Consensus 91 ----------------------------------~~~~~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~ 126 (175)
T 3nmr_A 91 ----------------------------------NAVEDRKLFIGMI--SKKCT--------ENDIRVMFSSFGQIEECR 126 (175)
T ss_dssp ----------------------------------SCGGGSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEE
T ss_pred ----------------------------------ccCCCCeEEEcCC--CCcCC--------HHHHHHHHHhCCCEEEEE
Confidence 0114458999999 77777 799999999999999999
Q ss_pred EeeC----CCccEEEEeCChHHHHHHHHHHcCceeC---CeEEEEEEeC
Q 006398 594 VEKD----SAGFVYLRFENTQSAFAAQRALHGRWFA---GKMITATFMV 635 (647)
Q Consensus 594 i~~~----~~G~afV~F~~~e~A~~A~~~lnG~~~~---gr~i~v~~~~ 635 (647)
++.+ ++|+|||+|.+.++|.+|+..|||..+. |++|.|.||+
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 127 ILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9765 4689999999999999999999998876 4999999985
No 28
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=7.9e-26 Score=216.24 Aligned_cols=192 Identities=20% Similarity=0.261 Sum_probs=147.0
Q ss_pred CcEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+ .+++++|.++|+.||.|..|.|+.+. +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57999999999 99999999999999999999998873 67999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
.......... .. . .... .++.... ....+
T Consensus 79 ~~~~~~~~~~-------~~---~-----------------~~~~----~~~~~~~-------------------~r~~~- 107 (198)
T 1qm9_A 79 QNVQLPREGQ-------ED---Q-----------------GLTK----DYGNSPL-------------------HRFKK- 107 (198)
T ss_dssp CSCCCSSSSS-------SS---S-----------------SCEE----ESSCCCT-------------------TSSSS-
T ss_pred CCcCCCCcCC-------cc---c-----------------cccc----cccCCch-------------------hhccC-
Confidence 5421110000 00 0 0000 0000000 00000
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcC-CeEEEEEeeC
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVEKD 597 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG-~V~~v~i~~~ 597 (647)
+ .........+++.+|||.|| |..++ +++|.++|+.|| .|..|.|...
T Consensus 108 -------------------~--~~~~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 108 -------------------P--GSKNFQNIFPPSATLHLSNI--PPSVS--------EEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp -------------------C--CCCCCSCCCCCCCEEEECCC--CTTCC--------HHHHHHHHHHTTSCCCEEEESST
T ss_pred -------------------c--cccccccCCCCccEEEEeCC--CCCCC--------HHHHHHHHHHcCCCceEEEEEeC
Confidence 0 00001112346789999999 77766 799999999999 9999999887
Q ss_pred CCccEEEEeCChHHHHHHHHHHcCceeC-CeEEEEEEeCch
Q 006398 598 SAGFVYLRFENTQSAFAAQRALHGRWFA-GKMITATFMVPQ 637 (647)
Q Consensus 598 ~~G~afV~F~~~e~A~~A~~~lnG~~~~-gr~i~v~~~~~~ 637 (647)
.+|+|||+|.+.++|..|+..|||..|+ |++|.|.|+.+.
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 8999999999999999999999999999 999999998764
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=5.1e-26 Score=217.55 Aligned_cols=175 Identities=16% Similarity=0.273 Sum_probs=144.2
Q ss_pred CCeEEEecCCC-CCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 256 QRTVFAYQICL-KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 256 ~~~v~v~~Lp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+++|||+|||+ .+|+++|.++|+.||.|..|.++.++ +|||||+|.+.++|..||. |+|..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998764 7899999999999999997 99999999999998876
Q ss_pred chhhhcccccc----------------cCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCC
Q 006398 334 AEKNLVQSNSS----------------IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDE 396 (647)
Q Consensus 334 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~ 396 (647)
........... ..............+..+|+|+|||..+++++|+++|++|| .|..|.|+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 43211100000 00000001112234589999999999999999999999999 9999998664
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCceec-CeEEEEEEeecC
Q 006398 397 TGHCKGFGFVQFARLEDARNALNLNGQLEIV-GRAIKVSAVTDQ 439 (647)
Q Consensus 397 ~g~~~g~afVef~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~~~ 439 (647)
.+|+|||+|.+.++|.+|+..|+|..|+ |+.|.|.|+...
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2789999999999999999999999999 999999998754
No 30
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=3.3e-26 Score=212.51 Aligned_cols=158 Identities=20% Similarity=0.373 Sum_probs=139.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+.. +..++|+.|.|.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 589999999999999999999999999999999998 5899999999999999999999984 5689999998887543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCCC
Q 006398 439 QSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVPP 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (647)
...
T Consensus 81 ~~~----------------------------------------------------------------------------- 83 (167)
T 2cjk_A 81 RDE----------------------------------------------------------------------------- 83 (167)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 210
Q ss_pred CCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-
Q 006398 519 LVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD- 597 (647)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~- 597 (647)
..+..+|||+|| |..++ +++|.++|+.||.|..|.|..+
T Consensus 84 ------------------------------~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 84 ------------------------------QDKTGKIFVGGI--GPDVR--------PKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp ------------------------------HHHCEEEEEEEE--CTTCC--------HHHHHHHHHTTSCCSEEECCCSS
T ss_pred ------------------------------ccCCCeEEECCC--CCCCC--------HHHHHHHHHhCccEEEEEEEEcC
Confidence 002348999999 77777 6999999999999999998654
Q ss_pred ----CCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 598 ----SAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 598 ----~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
++|+|||+|.+.++|.+|++ |||..|+|++|.|.|+.+.
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 57999999999999999998 8999999999999999764
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=3.1e-26 Score=214.43 Aligned_cols=166 Identities=20% Similarity=0.288 Sum_probs=139.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|||+|||+.+++++|+++|..||.|..+.+....++.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3456799999999999999999999999997765333333577889999999999999999995 999999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCccccccccccccc
Q 006398 436 VTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTL 515 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (647)
+......
T Consensus 88 ~~~~~~~------------------------------------------------------------------------- 94 (175)
T 1fje_B 88 PKGRDSK------------------------------------------------------------------------- 94 (175)
T ss_dssp CCCSSCS-------------------------------------------------------------------------
T ss_pred CCCcccc-------------------------------------------------------------------------
Confidence 7653210
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEe
Q 006398 516 VPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVE 595 (647)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~ 595 (647)
...+..+|||.|| |..++ +++|.++|+.||.|..+...
T Consensus 95 --------------------------------~~~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~g~v~~~~~~ 132 (175)
T 1fje_B 95 --------------------------------KVRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQD 132 (175)
T ss_dssp --------------------------------TTGGGGEEEEESC--CSSCC--------HHHHHHHCTTCSEEEEECSS
T ss_pred --------------------------------ccccCCEEEEeCC--CCCCC--------HHHHHHHHHhcCeEEEecCC
Confidence 0114569999999 77777 79999999999999888223
Q ss_pred eCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 596 KDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 596 ~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
..++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.+.
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 347899999999999999999999999999999999998763
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=3.4e-25 Score=211.81 Aligned_cols=192 Identities=17% Similarity=0.180 Sum_probs=139.1
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLH-FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp-~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
+..+|||+||| +.+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|..||+.|||..|.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 89999999999999999999999875 37899999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
....... . ..... . + .+.. ..+.......+..+
T Consensus 79 ~~~~~p~--~--~~~~~--~-~------------------------------~~~~--~~~~~~~~~r~~~~-------- 111 (205)
T 3tyt_A 79 QPAIMPG--Q--SYGLE--D-G------------------------------SCSY--KDFSESRNNRFSTP-------- 111 (205)
T ss_dssp CSCCCCC--S--CCBCT--T-S------------------------------CBSE--EECTTCTTCSCSSH--------
T ss_pred CCccCCC--c--ccccc--c-C------------------------------Cccc--cccCCCccccccCc--------
Confidence 5432000 0 00000 0 0 0000 00000000000000
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCe--EEEEEe
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKL--KHIFVE 595 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V--~~v~i~ 595 (647)
. ........+|+.+|||+|| |.+++ +++|.++|+.||.| ..|++.
T Consensus 112 -----------------~------~~~~~~~~~p~~~l~v~NL--p~~~t--------~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 112 -----------------E------QAAKNRIQHPSNVLHFFNA--PLEVT--------EENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp -----------------H------HHTTSCCCCCCSEEEEEEE--CTTCC--------HHHHHHHHHHHTCCCCSEEEEC
T ss_pred -----------------c------cccccccCCCcceEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEEE
Confidence 0 0000011346779999999 77777 79999999999999 889886
Q ss_pred eC---CCccEEEEeCChHHHHHHHHHHcCceeCCe----EEEEEEe
Q 006398 596 KD---SAGFVYLRFENTQSAFAAQRALHGRWFAGK----MITATFM 634 (647)
Q Consensus 596 ~~---~~G~afV~F~~~e~A~~A~~~lnG~~~~gr----~i~v~~~ 634 (647)
.. .+|+|||+|.+.++|..|+..|||..|.|. ++.|-|+
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 54 359999999999999999999999999888 5665553
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=1.8e-25 Score=223.07 Aligned_cols=157 Identities=26% Similarity=0.392 Sum_probs=143.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|..||.|..|.|. .++|||||+|.+.++|..|+. ++|..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 3456899999999999999999999999999999996 357999999999999999997 999999999999987
Q ss_pred CcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCH
Q 006398 332 SEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARL 411 (647)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~ 411 (647)
+. +..+|||+|||+.+++++|.++|..||.|..|.|+.+.+|.++|||||+|.+.
T Consensus 93 a~-------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 93 AT-------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAK 147 (261)
T ss_dssp CC-------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSH
T ss_pred cc-------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCH
Confidence 63 25789999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHc-CCceec---CeEEEEEEeecCC
Q 006398 412 EDARNALNLN-GQLEIV---GRAIKVSAVTDQS 440 (647)
Q Consensus 412 ~~A~~Al~~l-~g~~~~---g~~i~v~~~~~~~ 440 (647)
++|.+|+..| ++..+. ++.|.|.++....
T Consensus 148 ~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 148 PPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999 555554 8999999987654
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.93 E-value=2.8e-25 Score=207.26 Aligned_cols=154 Identities=26% Similarity=0.432 Sum_probs=135.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPF----G-------TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 427 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~ 427 (647)
+.++|||+|||+.+++++|.++|++| | .|..+.+... +|||||+|.+.++|.+|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 36899999999999999999999999 6 7777777654 899999999999999999 89999999
Q ss_pred CeEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCccccc
Q 006398 428 GRAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLG 507 (647)
Q Consensus 428 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (647)
|+.|.|.++.....
T Consensus 77 g~~i~v~~~~~~~~------------------------------------------------------------------ 90 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------------------------------------------------------ 90 (172)
T ss_dssp TEECEEECCSSCCC------------------------------------------------------------------
T ss_pred CceeeecCCcccCC------------------------------------------------------------------
Confidence 99999988543221
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcC
Q 006398 508 AASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG 587 (647)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG 587 (647)
.....+|||+|| |..++ +++|.++|+.||
T Consensus 91 -----------------------------------------~~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~G 119 (172)
T 2g4b_A 91 -----------------------------------------LPGAHKLFIGGL--PNYLN--------DDQVKELLTSFG 119 (172)
T ss_dssp -----------------------------------------CTTTTCEEEECC--CTTCC--------HHHHHHHHHTTS
T ss_pred -----------------------------------------CCCCCEEEEEcC--CCcCC--------HHHHHHHHHhcC
Confidence 012458999999 77777 799999999999
Q ss_pred CeEEEEEeeCC-----CccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeC
Q 006398 588 KLKHIFVEKDS-----AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMV 635 (647)
Q Consensus 588 ~V~~v~i~~~~-----~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~ 635 (647)
.|..|.+..+. +|+|||+|.+.++|.+|+..|||..|+|++|.|.||.
T Consensus 120 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999997653 7899999999999999999999999999999999974
No 35
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=7.5e-25 Score=209.39 Aligned_cols=175 Identities=25% Similarity=0.435 Sum_probs=139.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC----C-------cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPF----G-------TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g 428 (647)
.++|||+|||+.+++++|.++|++| | .|..+.+.. ++|||||+|.+.++|.+|| .|+|..|.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 6899999999999999999999999 5 566666644 4899999999999999999 899999999
Q ss_pred eEEEEEEeecCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccc
Q 006398 429 RAIKVSAVTDQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGA 508 (647)
Q Consensus 429 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (647)
+.|.|.++........... . + ...
T Consensus 78 ~~i~v~~~~~~~~~~~~~~-------------------------------~-----------~-----~~~--------- 101 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSE-------------------------------N-----------P-----SVY--------- 101 (198)
T ss_dssp EEEEEECCCCCCCCCCSSS-------------------------------C-----------S-----SCC---------
T ss_pred ceEEEeCCCCCCCCCCCcC-------------------------------C-----------C-----cCC---------
Confidence 9999998766532110000 0 0 000
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCC
Q 006398 509 ASAVSTLVPPLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGK 588 (647)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~ 588 (647)
.+ . . .......+..+|||+|| |..++ +++|.++|+.||.
T Consensus 102 -------~~-----------~----------~---~~~~~~~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 102 -------VP-----------G----------V---VSTVVPDSAHKLFIGGL--PNYLN--------DDQVKELLTSFGP 140 (198)
T ss_dssp -------CT-----------T----------S---SCCCSSCCCCEEEEECC--CTTCC--------HHHHHHHHHTBSC
T ss_pred -------CC-----------C----------C---ccCCCCCCCCEEEEeCC--CCCCC--------HHHHHHHHHHcCC
Confidence 00 0 0 00011235679999999 77777 7999999999999
Q ss_pred eEEEEEeeCC-----CccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEeCch
Q 006398 589 LKHIFVEKDS-----AGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFMVPQ 637 (647)
Q Consensus 589 V~~v~i~~~~-----~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~~~~ 637 (647)
|..|.+..+. +|+|||+|.+.++|..|+..|||..|+|++|.|.|+.+.
T Consensus 141 v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 141 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999997653 799999999999999999999999999999999998765
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.91 E-value=8.5e-24 Score=210.98 Aligned_cols=153 Identities=24% Similarity=0.357 Sum_probs=136.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||+.+++++|.++|++||.|..|.|..+ +|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45689999999999999999999999999999999764 7999999999999999999999999999999999953
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHHhccCCCCcccCCCCCCCcccCCCCCCCCcccccccccccccCC
Q 006398 438 DQSGLQDLGANTTGDFDDDEGGGLSLNARSRALLMQKLDRSGSATTIAGSAVTPAVNSTALPLPTAPLLGAASAVSTLVP 517 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (647)
.
T Consensus 95 ~------------------------------------------------------------------------------- 95 (261)
T 3sde_A 95 H------------------------------------------------------------------------------- 95 (261)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCcCccCCCCCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC
Q 006398 518 PLVQGTVPTHPGQLGTALQVPTASVPIFDTIGVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD 597 (647)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~ 597 (647)
+.+|||+|| |..++ +++|.++|+.||.|..|.|+.+
T Consensus 96 ----------------------------------~~~l~v~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 96 ----------------------------------GAALTVKNL--SPVVS--------NELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ----------------------------------SSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEEEE
T ss_pred ----------------------------------CCcccccCC--CCCCC--------HHHHHHHHHhcCCeEEEEeeeC
Confidence 237999999 77777 6999999999999999998655
Q ss_pred ----CCccEEEEeCChHHHHHHHHHHc-CceeC---CeEEEEEEeCchh
Q 006398 598 ----SAGFVYLRFENTQSAFAAQRALH-GRWFA---GKMITATFMVPQT 638 (647)
Q Consensus 598 ----~~G~afV~F~~~e~A~~A~~~ln-G~~~~---gr~i~v~~~~~~~ 638 (647)
++|+|||+|.+.++|..|+..|| |..+. |++|.|.++.+..
T Consensus 132 ~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 132 DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 47899999999999999999995 55555 9999999988754
No 37
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.84 E-value=6.2e-21 Score=162.50 Aligned_cols=97 Identities=47% Similarity=0.866 Sum_probs=92.8
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-CCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-SAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
.|+++|+|.||++|.++.|++++.+|++||.++|++||.|..|.|+++ ++|+|||+|.+.++|..|+..|||+.|+|++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 478899999999999999999999999999999999999999999766 4899999999999999999999999999999
Q ss_pred EEEEEeCchhhhccCCCC
Q 006398 629 ITATFMVPQTYEAKFPDS 646 (647)
Q Consensus 629 i~v~~~~~~~~~~~~~~~ 646 (647)
|.|.|+++..|..+||++
T Consensus 85 i~v~~~~~~~y~~~fp~a 102 (114)
T 3s6e_A 85 ITAAYVPLPTYHNLFPDS 102 (114)
T ss_dssp CEEEEECHHHHHHHCGGG
T ss_pred EEEEEEcHHHHHHhCccc
Confidence 999999999999999986
No 38
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.81 E-value=6.6e-20 Score=154.51 Aligned_cols=94 Identities=32% Similarity=0.554 Sum_probs=88.6
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-------CCccEEEEeCChHHHHHHHHHHcC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-------SAGFVYLRFENTQSAFAAQRALHG 621 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-------~~G~afV~F~~~e~A~~A~~~lnG 621 (647)
+.|+++|+|.||++|.++.++.+|.+|++||.++|++||.|..|.|+.+ ++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 5689999999999999999999999999999999999999999999653 579999999999999999999999
Q ss_pred ceeCCeEEEEEEeCchhhhcc
Q 006398 622 RWFAGKMITATFMVPQTYEAK 642 (647)
Q Consensus 622 ~~~~gr~i~v~~~~~~~~~~~ 642 (647)
+.|+|++|.|.|+++..|.+.
T Consensus 82 ~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp CEETTEECEEEEECHHHHHTT
T ss_pred CEeCCCEEEEEEeCHHHHhhc
Confidence 999999999999999999764
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=4e-19 Score=162.88 Aligned_cols=149 Identities=23% Similarity=0.324 Sum_probs=113.3
Q ss_pred EEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEE
Q 006398 285 DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRL 363 (647)
Q Consensus 285 ~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (647)
.+.|+.+.. .++|||||+|.+.++|++|++ +++.......+.+........... ...............+|
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE------GSHHHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC------CCCCSSCCCCCCBCCEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc------cccccccccCCCCCCEE
Confidence 456777664 589999999999999999996 665433333333321111100000 00111122223457899
Q ss_pred EEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 364 YVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 364 ~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.....
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999999998 5899999999999999999999999999999999999999987653
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=7.4e-19 Score=151.51 Aligned_cols=107 Identities=23% Similarity=0.353 Sum_probs=73.0
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~ 334 (647)
..+|||+|||+.+|+++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|..||+ |+|..|.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999999864 489999999999999999996 999999999999988765
Q ss_pred hhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHH
Q 006398 335 EKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTED 375 (647)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~ 375 (647)
........ .........|||.|||+.+|++
T Consensus 83 ~~~~~~~~-----------~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 83 RKEREAEL-----------GARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCC--------------------------------------
T ss_pred cccccccc-----------ccccCCCCceEeCCCCCCcccc
Confidence 43221111 1112335679999999999876
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=3.2e-18 Score=155.32 Aligned_cols=78 Identities=23% Similarity=0.441 Sum_probs=72.2
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.+.++|||+|| |..++ +++|.++|+.||.|..|.|+.+++|||||+|.+.++|..|+..|||..|+|++|
T Consensus 71 ~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 71 PLDCKVYVGNL--GNNGN--------KTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp TTSCEEEEESC--CSCCS--------CHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 35679999999 77777 599999999999999999988889999999999999999999999999999999
Q ss_pred EEEEeCch
Q 006398 630 TATFMVPQ 637 (647)
Q Consensus 630 ~v~~~~~~ 637 (647)
.|.|+.+.
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998764
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=5.9e-18 Score=153.50 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=112.7
Q ss_pred CCcccEEEEEecccccHHHHHH-h-cCCccCCceEEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCC
Q 006398 295 RRSKGVGYVEFYDVMSVPMAIA-L-SGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNM 372 (647)
Q Consensus 295 g~~~g~afV~f~~~~~a~~al~-~-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~ 372 (647)
...+|+++|+|.+.++|++|++ + ||..+.| .|.+.++.......... .............+.++|||+|||+.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS---HHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS---SSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc---ccccccccccCCCCCCEEEEeCCCCCC
Confidence 4678999999999999999996 8 9999999 99998765432211110 011111223344567999999999999
Q ss_pred CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 373 TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 373 ~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|..|+..|+|..|+|+.|.|.|+..+
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999876 5889999999999999999999999999999999998765
No 43
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.73 E-value=3.3e-17 Score=150.05 Aligned_cols=77 Identities=19% Similarity=0.428 Sum_probs=70.7
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCceeC
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRWFA 625 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~~~ 625 (647)
+..+|||+|| |..++ +++|.++|+.||.|..|.|+.+ ++|||||+|.+.++|..|+..|||..|+
T Consensus 69 ~~~~l~v~nl--~~~~~--------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 69 GMTSLKVDNL--TYRTS--------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp BCCEEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5679999999 77777 7999999999999999999654 6799999999999999999999999999
Q ss_pred CeEEEEEEeCch
Q 006398 626 GKMITATFMVPQ 637 (647)
Q Consensus 626 gr~i~v~~~~~~ 637 (647)
|++|.|.|+.+.
T Consensus 139 g~~l~v~~a~~~ 150 (158)
T 2kn4_A 139 GRELRVQMARYG 150 (158)
T ss_dssp SSEEEEEEECCS
T ss_pred CeEEEEEECCCC
Confidence 999999999865
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=139.35 Aligned_cols=80 Identities=21% Similarity=0.359 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+..+|||+|||+.+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ |||..|.|+.|.|.++.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999996 99999999999998875
Q ss_pred c
Q 006398 334 A 334 (647)
Q Consensus 334 ~ 334 (647)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 45
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.71 E-value=2.5e-17 Score=141.28 Aligned_cols=87 Identities=30% Similarity=0.633 Sum_probs=77.9
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---------CCccEEEEeCChHHHHHHHHHHcC
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---------SAGFVYLRFENTQSAFAAQRALHG 621 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~---------~~G~afV~F~~~e~A~~A~~~lnG 621 (647)
|+++|+|.||++|.++ ..+|++||.++|++||.|..|.|+.+ ++|+|||+|.++++|.+|+..|||
T Consensus 19 ps~vl~L~Nm~~~~el-----~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDI-----DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEESCSCGGGC-----CTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 7889999999887554 34688999999999999999999654 248999999999999999999999
Q ss_pred ceeCCeEEEEEEeCchhhhcc
Q 006398 622 RWFAGKMITATFMVPQTYEAK 642 (647)
Q Consensus 622 ~~~~gr~i~v~~~~~~~~~~~ 642 (647)
+.|+|++|.|.|+++..|.+.
T Consensus 94 r~f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 94 RWFAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp CEETTEECEEEEECHHHHHTT
T ss_pred CEECCcEEEEEEcChHhcccc
Confidence 999999999999999999753
No 46
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=5.2e-17 Score=136.61 Aligned_cols=88 Identities=28% Similarity=0.548 Sum_probs=77.1
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC------CCccEEEEeCChHHHHHHHHHHcCc
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD------SAGFVYLRFENTQSAFAAQRALHGR 622 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~------~~G~afV~F~~~e~A~~A~~~lnG~ 622 (647)
+.++++|+|.||++|.++. .+++++|.++|++||.|..|.|+.+ ++|+|||+|.++++|..|+..|||+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~-----dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVD-----EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp GSCCSEEEEESSSCSCCC--------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCChHHhh-----HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 3578899999998876543 3467999999999999999999653 5799999999999999999999999
Q ss_pred eeCCeEEEEEEeCchhhhc
Q 006398 623 WFAGKMITATFMVPQTYEA 641 (647)
Q Consensus 623 ~~~gr~i~v~~~~~~~~~~ 641 (647)
.|.|++|.|.|+++..|..
T Consensus 80 ~~~Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 80 YFGGRVVKACFYNLDKFRV 98 (105)
T ss_dssp EETTEECEEEECCHHHHHT
T ss_pred EECCcEEEEEEcCHHHhhh
Confidence 9999999999999999865
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=136.19 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=75.3
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcC-CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-h-cCCccCCceEEEccC
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAG-KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-L-SGQPLLGQPVMVKPS 332 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~-~g~~~~g~~i~v~~~ 332 (647)
+++|||+|||+.+|+++|+++|++|| .|.+|.|+.++.||.++|||||+|.+.++|.+||+ + ++..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999997 5 456799999999998
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.+.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 75543
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=132.21 Aligned_cols=79 Identities=38% Similarity=0.576 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||.+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 578999999999999999999999999999999998 5899999999999999999999999999999999999999864
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=136.42 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=78.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999999999999997 9999999999999988
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 50
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.5e-16 Score=125.75 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=74.4
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~ 630 (647)
.+.-|+|+|| +..++ +++|+++|..||.|..+.+.. ++|||||+|.+.++|.+|++.|||+.|+|++|.
T Consensus 6 ~~~wL~VgNL--~~~~t--------e~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 6 GSSWLLLKNL--TAQID--------GPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCCEEEEECC--CTTCC--------CHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccceEEEeCC--CccCC--------HHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 4568999999 66666 699999999999999999965 899999999999999999999999999999999
Q ss_pred EEEeCchhhhccCC
Q 006398 631 ATFMVPQTYEAKFP 644 (647)
Q Consensus 631 v~~~~~~~~~~~~~ 644 (647)
|.+|.+...+..+.
T Consensus 75 V~~A~e~~~~~~~~ 88 (89)
T 2wbr_A 75 AESPSENEVQSIMQ 88 (89)
T ss_dssp EECCCHHHHHHHHC
T ss_pred EEECCHHHHHHHhh
Confidence 99999877665543
No 51
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.67 E-value=4.9e-17 Score=172.56 Aligned_cols=167 Identities=15% Similarity=0.293 Sum_probs=111.8
Q ss_pred HHHHHHhcCCeeEEEEee----eC-CCCCcccEE--EEEecccccHHHHHH-hcCCccCCceEEEccCcchhhhcccccc
Q 006398 273 VYEFFSRAGKVRDVRLIM----DR-NSRRSKGVG--YVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSS 344 (647)
Q Consensus 273 l~~~f~~~G~i~~v~~~~----~~-~tg~~~g~a--fV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~~~~~~~~~~ 344 (647)
|..+|.++|+|..|..+. +. .+....|++ |+.|.....+..++. ++...+.+.....+.......... ..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~--~~ 86 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVET--EL 86 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 788999999998874332 22 223344444 888877766655543 222222211100000000000000 00
Q ss_pred cCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 006398 345 IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQ 423 (647)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g 423 (647)
..+.+.........+.++|||+|||+.|++++|.++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|||
T Consensus 87 ~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 87 KMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred hhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC
Confidence 001111111222345789999999999999999999999999999999988 5889999999999999999999999999
Q ss_pred ceecCeEEEEEEeecCCC
Q 006398 424 LEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 424 ~~~~g~~i~v~~~~~~~~ 441 (647)
..|+|+.|.|.|+.....
T Consensus 167 ~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 167 KKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CEECCEEEEEEEeCCCCC
Confidence 999999999999986543
No 52
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=9.6e-17 Score=131.73 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=71.6
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcC--CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
.+|||+|||+.+|+++|+++|++|| .|..|.++.++.+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999996 99999999999999887
Q ss_pred chhh
Q 006398 334 AEKN 337 (647)
Q Consensus 334 ~~~~ 337 (647)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6544
No 53
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=3.9e-16 Score=127.27 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=75.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
..+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||++++..|.|+.|.|+++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34568999999999999999999999999999999999999999999999999999999999998999999999999764
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=131.08 Aligned_cols=79 Identities=18% Similarity=0.322 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCC--eeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCC----ccCCceE
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGK--VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ----PLLGQPV 327 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~--i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~----~~~g~~i 327 (647)
.-.+|||+|||+.+|+++|+++|++||. |.+|.+++|+.||.++|||||+|.+.++|.+||+ |||. .|.|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4479999999999999999999999994 6799999999999999999999999999999997 8886 4899999
Q ss_pred EEccCc
Q 006398 328 MVKPSE 333 (647)
Q Consensus 328 ~v~~~~ 333 (647)
.|.++.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998874
No 55
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=130.46 Aligned_cols=85 Identities=27% Similarity=0.482 Sum_probs=79.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+|++..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.+...
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 65443
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=3.5e-16 Score=127.53 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
+.++|||+|||+.+|+++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+. |+|..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45899999999999999999999999999999999999999999999999999999999997 99999999999998875
Q ss_pred c
Q 006398 334 A 334 (647)
Q Consensus 334 ~ 334 (647)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 57
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=126.81 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=71.2
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCce--eCC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW--FAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~--~~g 626 (647)
.+|+++|||+|| |..++ +++|.++|++||.|..|.+++ ++|+|||+|.+.++|..|+..|||.. |+|
T Consensus 18 ~~ps~~l~V~NL--p~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 18 TPASPVVHIRGL--IDGVV--------EADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCCSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 468889999999 87777 799999999999999999975 68999999999999999999999986 789
Q ss_pred eEEEEEEeCch
Q 006398 627 KMITATFMVPQ 637 (647)
Q Consensus 627 r~i~v~~~~~~ 637 (647)
++|.|+|+...
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999998754
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.5e-16 Score=129.73 Aligned_cols=84 Identities=24% Similarity=0.398 Sum_probs=78.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|..||. |+|..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356899999999999999999999999999999999999899999999999999999999995 9999999999999998
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.....
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 76554
No 59
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-15 Score=126.77 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=76.1
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc--CceeCC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH--GRWFAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln--G~~~~g 626 (647)
..++++|||+|| |..++ +++|.++|+.||.|..|.|++ .+|+|||+|.+.++|..|+..|+ +..|.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 12 GAPSRVLHIRKL--PGEVT--------ETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457889999999 77777 799999999999999998876 48999999999999999999875 678999
Q ss_pred eEEEEEEeCchhhhccCCCC
Q 006398 627 KMITATFMVPQTYEAKFPDS 646 (647)
Q Consensus 627 r~i~v~~~~~~~~~~~~~~~ 646 (647)
++|.|.|+.......-.+.|
T Consensus 81 r~l~V~~a~~~~~~~~~~~~ 100 (101)
T 2cq1_A 81 QPIYIQYSNHKELKTSGPSS 100 (101)
T ss_dssp EECEEEECSCSSCCCCCCSC
T ss_pred cEEEEEEcCcccCcCCCCCC
Confidence 99999999988776654443
No 60
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-16 Score=133.06 Aligned_cols=91 Identities=30% Similarity=0.505 Sum_probs=79.6
Q ss_pred CCCcceEEeccCCCCCCC-CchhhhhhHHHHHHHHhhhcCCeEEEEEe-eCCCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 549 GVPSECLLLKNMFDPKNE-TYEEFDMDIKEDVEGECSKFGKLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~-~d~~~~~~~~~dl~~~F~~fG~V~~v~i~-~~~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
..++++|+|.||+.+.++ .++++|.+++++|.++|++||.|..|.|. +.++|+|||+|.+.++|..|+..|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457889999999877653 35578889999999999999999999773 3478999999999999999999999999999
Q ss_pred eEEEEEEeCchhh
Q 006398 627 KMITATFMVPQTY 639 (647)
Q Consensus 627 r~i~v~~~~~~~~ 639 (647)
++|.|.|+.+...
T Consensus 92 r~l~v~~a~~~~~ 104 (112)
T 2dit_A 92 RQITAQAWDGTTD 104 (112)
T ss_dssp EECEEEECCSCCC
T ss_pred cEEEEEEeCCCCC
Confidence 9999999987543
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=131.17 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 4456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+...
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8654
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.2e-16 Score=132.28 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=78.0
Q ss_pred CCCeEEEecCCC------CCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC-ce
Q 006398 255 DQRTVFAYQICL------KADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG-QP 326 (647)
Q Consensus 255 ~~~~v~v~~Lp~------~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g-~~ 326 (647)
..++|||+|||+ .+++++|.++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+ |||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999999999999999999999999999996 99999999 99
Q ss_pred EEEccCcchhh
Q 006398 327 VMVKPSEAEKN 337 (647)
Q Consensus 327 i~v~~~~~~~~ 337 (647)
|.|.++.+...
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99998876544
No 63
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.7e-16 Score=131.14 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|..||.+++..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 3458999999999999999999999999999999999988 999999999999999999999999999999999998765
Q ss_pred c
Q 006398 334 A 334 (647)
Q Consensus 334 ~ 334 (647)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=1.6e-15 Score=130.68 Aligned_cols=85 Identities=24% Similarity=0.401 Sum_probs=79.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred Ccchhh
Q 006398 332 SEAEKN 337 (647)
Q Consensus 332 ~~~~~~ 337 (647)
+.....
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 876544
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=129.75 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=78.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999999988
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
....
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 6543
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=6e-16 Score=124.89 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=75.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
.+|||+|||+.+++++|.++|.+||.|..|.++.+..+|.++|||||+|.+.++|..|+. |+|..|.|+.|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999999999999999999999999999997 9999999999999987643
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=6.8e-16 Score=128.35 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
++++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..|++ |+|..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999999999999999999999999999996 99999999999999887
Q ss_pred chhh
Q 006398 334 AEKN 337 (647)
Q Consensus 334 ~~~~ 337 (647)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6544
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9e-16 Score=127.37 Aligned_cols=82 Identities=24% Similarity=0.422 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
++++|||+|||+.+|+++|+++|.+||.|..|.++.++.++.++|||||+|.+.++|..||+ ||+..|.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56899999999999999999999999999999999999999999999999999999999997 99999999999999876
Q ss_pred chh
Q 006398 334 AEK 336 (647)
Q Consensus 334 ~~~ 336 (647)
...
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 69
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.5e-16 Score=130.13 Aligned_cols=85 Identities=27% Similarity=0.426 Sum_probs=79.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred Ccchhh
Q 006398 332 SEAEKN 337 (647)
Q Consensus 332 ~~~~~~ 337 (647)
+.....
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 865443
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=9.8e-16 Score=130.13 Aligned_cols=84 Identities=24% Similarity=0.437 Sum_probs=78.4
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
...+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|..|++ |+|..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34466899999999999999999999999999999999999999999999999999999999997 99999999999998
Q ss_pred cCcch
Q 006398 331 PSEAE 335 (647)
Q Consensus 331 ~~~~~ 335 (647)
++.+.
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 87543
No 71
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.63 E-value=7.2e-16 Score=125.05 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+++++|.++|.+||.|..|.++.+..+|.++|||||+|.+.++|..|++ |||..|.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356899999999999999999999999999999999999999999999999999999999996 9999999999999875
No 72
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.2e-16 Score=133.55 Aligned_cols=85 Identities=61% Similarity=0.985 Sum_probs=79.3
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
....++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||.|++..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.....
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 66544
No 73
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=128.32 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999998 57999999999999999999999999999999999999998
Q ss_pred ecC
Q 006398 437 TDQ 439 (647)
Q Consensus 437 ~~~ 439 (647)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 74
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=127.44 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=76.4
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeE--------EEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCcc
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRD--------VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPL 322 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~--------v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~ 322 (647)
...+.++|||+|||+.+|+++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+.++|..|++ |+|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445689999999999999999999999999999 9999999999999999999999999999997 999999
Q ss_pred CCceEEEccC
Q 006398 323 LGQPVMVKPS 332 (647)
Q Consensus 323 ~g~~i~v~~~ 332 (647)
.|+.|.|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999876
No 75
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=3.6e-16 Score=123.51 Aligned_cols=75 Identities=24% Similarity=0.408 Sum_probs=72.2
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
+|||+|||+.+|+++|.++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+++++..|.|+.|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999764
No 76
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=126.63 Aligned_cols=80 Identities=30% Similarity=0.456 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |+|..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999999886
Q ss_pred c
Q 006398 333 E 333 (647)
Q Consensus 333 ~ 333 (647)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 4
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-16 Score=127.77 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHc-CCceecCeEEEEEEe
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIKVSAV 436 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l-~g~~~~g~~i~v~~~ 436 (647)
+++|||+|||+.+++++|+++|++|| .|..|.|+.+ .+|.++|||||+|.+.++|.+||+.+ +++.|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999999998 58999999999999999999999876 567899999999999
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8765
No 78
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=127.36 Aligned_cols=82 Identities=21% Similarity=0.416 Sum_probs=76.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+. +|.++|||||+|.+.++|..||+ |++..|.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999996 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+.+.
T Consensus 93 a~~~ 96 (100)
T 2do4_A 93 SNSG 96 (100)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7644
No 79
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=128.54 Aligned_cols=83 Identities=27% Similarity=0.407 Sum_probs=77.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
..+.++|||+|||+.+|+++|+++|.+|| |..|.|+.++.+|.++|||||+|.+.++|..||+|++..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34568999999999999999999999997 99999999999999999999999999999999999999999999999988
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
....
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 80
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=7.4e-16 Score=132.84 Aligned_cols=103 Identities=21% Similarity=0.419 Sum_probs=91.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+ +.++|||||+|.+.++|..|+. |||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35689999999999999999999999999999999965 4569999999999999999997 9999999999999998
Q ss_pred cchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCc
Q 006398 333 EAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGT 386 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~ 386 (647)
.+.... .+++...++++|.++|++||.
T Consensus 83 ~~~~~~---------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF---------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT---------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh---------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 655442 366777889999999999984
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.3e-15 Score=124.74 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=75.7
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
.++|||+|||+.+|+++|+++|.+||.|..|.++.+..+|.++|||||+|.+.++|..|+.++|..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999988754
No 82
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=128.71 Aligned_cols=86 Identities=22% Similarity=0.443 Sum_probs=79.1
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeee-CCCCCcccEEEEEecccccHHHHHH-h-cCCccCCceEE
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMD-RNSRRSKGVGYVEFYDVMSVPMAIA-L-SGQPLLGQPVM 328 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~-~~tg~~~g~afV~f~~~~~a~~al~-~-~g~~~~g~~i~ 328 (647)
.....++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ..++.++|||||+|.+.++|..||. | |+..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446689999999999999999999999999999999999 7899999999999999999999997 8 99999999999
Q ss_pred EccCcchhh
Q 006398 329 VKPSEAEKN 337 (647)
Q Consensus 329 v~~~~~~~~ 337 (647)
|.++.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 998865543
No 83
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.6e-16 Score=127.99 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=76.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCC---CCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRN---SRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~---tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+.. |+.++|||||+|.+.++|..||. |++..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 568999999999999999999999999999999999887 77999999999999999999997 99999999999999
Q ss_pred cCcchh
Q 006398 331 PSEAEK 336 (647)
Q Consensus 331 ~~~~~~ 336 (647)
++....
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 886544
No 84
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=129.63 Aligned_cols=84 Identities=21% Similarity=0.406 Sum_probs=78.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hc------CCccCCc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LS------GQPLLGQ 325 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~------g~~~~g~ 325 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||. |+ +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 4456899999999999999999999999999999999999999999999999999999999997 99 9999999
Q ss_pred eEEEccCcchh
Q 006398 326 PVMVKPSEAEK 336 (647)
Q Consensus 326 ~i~v~~~~~~~ 336 (647)
.|.|.++.+..
T Consensus 92 ~l~v~~a~~~~ 102 (111)
T 1x4h_A 92 QLKVDLAVTRD 102 (111)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCc
Confidence 99999886543
No 85
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=1.5e-15 Score=130.94 Aligned_cols=84 Identities=19% Similarity=0.393 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|..||. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999996 9999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 65443
No 86
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=126.62 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=72.8
Q ss_pred CCCcceEEeccCCCCC-CCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCc--eeC
Q 006398 549 GVPSECLLLKNMFDPK-NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR--WFA 625 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~-~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~--~~~ 625 (647)
..++++|||+|| |. .++ +++|.++|++||.|..|.|++ .+|+|||+|.+.++|..|+..|||. .|.
T Consensus 12 ~~p~~~l~V~nL--p~~~~t--------e~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 12 VETRRVVHIMDF--QRGKNL--------RYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCEEEEESC--CCSSSH--------HHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEEeCC--CCCcCC--------HHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 347889999999 87 766 799999999999999999976 5799999999999999999999975 499
Q ss_pred CeEEEEEEeCchhhhccC
Q 006398 626 GKMITATFMVPQTYEAKF 643 (647)
Q Consensus 626 gr~i~v~~~~~~~~~~~~ 643 (647)
|++|.|+|+....-...-
T Consensus 81 Gr~l~V~~a~~~~~~~~~ 98 (102)
T 1x4d_A 81 GKPVRVHLSQKYKRIKSG 98 (102)
T ss_dssp TEECEEEEECCCTTSSCC
T ss_pred CcEEEEEECCCCCCCCCC
Confidence 999999999865544433
No 87
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.1e-16 Score=128.26 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEE-EEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDV-RLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v-~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
+.++|||+|||+.+|+++|.++|.+||.|..| .|+.++.+|.++|||||+|.+.++|..||. |++..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 999999999999999999999999999998 9999999999999988
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
.+..
T Consensus 84 ~~~~ 87 (96)
T 1x5t_A 84 FKKD 87 (96)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6544
No 88
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=125.80 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc--EEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCc----eecCeE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGT--VELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQL----EIVGRA 430 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~--v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~----~~~g~~ 430 (647)
....+|||+|||+.+|+++|+++|++||. |..|.|+++ .+|.++|||||+|.+.++|.+|++.|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 578999998 58999999999999999999999999985 599999
Q ss_pred EEEEEeec
Q 006398 431 IKVSAVTD 438 (647)
Q Consensus 431 i~v~~~~~ 438 (647)
|.|.||..
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999864
No 89
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-16 Score=129.34 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=78.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. |++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999997 9999999999999988
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
.+..
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 90
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.6e-15 Score=122.78 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=78.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEE
Q 006398 353 TGPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAI 431 (647)
Q Consensus 353 ~~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i 431 (647)
......+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|++.|+|..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3344566789999999999999999999999999999999988 468889999999999999999999999999999999
Q ss_pred EEEEee
Q 006398 432 KVSAVT 437 (647)
Q Consensus 432 ~v~~~~ 437 (647)
.|.|++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999974
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.1e-15 Score=130.48 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=78.5
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
...+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+..+|.++|||||+|.+.++|..||. |+|..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred cCcch
Q 006398 331 PSEAE 335 (647)
Q Consensus 331 ~~~~~ 335 (647)
++...
T Consensus 102 ~a~~~ 106 (110)
T 1oo0_B 102 WCFVK 106 (110)
T ss_dssp ESEES
T ss_pred EcccC
Confidence 87654
No 92
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=128.25 Aligned_cols=84 Identities=23% Similarity=0.508 Sum_probs=78.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||+ ||+..|.|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999995 999999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 76543
No 93
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=129.10 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=78.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCC-CCcccEEEEEecccccHHHHHHhcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS-RRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~t-g~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+|| |..|.|+.++.+ |.++|||||+|.+.++|.+||.|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999 999999999988 9999999999999999999999999999999999998
Q ss_pred Ccchhh
Q 006398 332 SEAEKN 337 (647)
Q Consensus 332 ~~~~~~ 337 (647)
+.....
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 865443
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.6e-15 Score=128.68 Aligned_cols=83 Identities=17% Similarity=0.290 Sum_probs=77.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||. +++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4466899999999999999999999999999999999999999999999999999999999997 787 89999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 86543
No 95
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=128.57 Aligned_cols=85 Identities=22% Similarity=0.382 Sum_probs=78.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 34568999999999999999999999999999999999999999999999999999999999988999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.+...
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 65543
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=127.46 Aligned_cols=83 Identities=19% Similarity=0.309 Sum_probs=77.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCee-EEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCce----
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVR-DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP---- 326 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~-~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~---- 326 (647)
..+.++|||+|||+.+|+++|+++|.+||.|. .|.|+.++.+|.++|||||+|.+.++|..|++ |||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34568999999999999999999999999999 99999999999999999999999999999998 9999999999
Q ss_pred EEEccCcch
Q 006398 327 VMVKPSEAE 335 (647)
Q Consensus 327 i~v~~~~~~ 335 (647)
|.|.++...
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 888877543
No 97
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-15 Score=123.24 Aligned_cols=84 Identities=24% Similarity=0.405 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35578999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7764
No 98
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.8e-16 Score=128.99 Aligned_cols=84 Identities=18% Similarity=0.375 Sum_probs=78.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||+ |++..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456899999999999999999999999999999999999999999999999999999999996 9999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65443
No 99
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=1.4e-14 Score=124.71 Aligned_cols=87 Identities=30% Similarity=0.503 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.....++|||+|||+.+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456799999999999999999999999999999999988 588999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 006398 435 AVTDQSGL 442 (647)
Q Consensus 435 ~~~~~~~~ 442 (647)
|+..+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99877653
No 100
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=2.6e-15 Score=127.14 Aligned_cols=83 Identities=23% Similarity=0.393 Sum_probs=76.7
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC---ceEEE
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG---QPVMV 329 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g---~~i~v 329 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++ +|.++|||||+|.+.++|..||. |+|..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356899999999999999999999999999999999998 79999999999999999999997 99999998 99999
Q ss_pred ccCcchhh
Q 006398 330 KPSEAEKN 337 (647)
Q Consensus 330 ~~~~~~~~ 337 (647)
.++.....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 98865443
No 101
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=126.51 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=71.9
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc--CceeCC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH--GRWFAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln--G~~~~g 626 (647)
..+.++|||+|| |..++ +++|.++|++||.|..|.|++ .+|||||+|.+.++|..|+..|+ |..|.|
T Consensus 13 ~~~~~~LfV~nL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 13 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCEEEECSC--CTTSC--------HHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457789999999 87777 799999999999999999976 48999999999999999999987 478999
Q ss_pred eEEEEEEeCchhh
Q 006398 627 KMITATFMVPQTY 639 (647)
Q Consensus 627 r~i~v~~~~~~~~ 639 (647)
++|.|.|+.+...
T Consensus 82 r~l~V~~A~~~~~ 94 (105)
T 1sjq_A 82 QPIYIQFSNHKEL 94 (105)
T ss_dssp EECCBCCCSSSSC
T ss_pred EEEEEEEcCCCCC
Confidence 9999999987644
No 102
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=1.7e-15 Score=128.42 Aligned_cols=84 Identities=27% Similarity=0.468 Sum_probs=78.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCcc---CCceEE
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPL---LGQPVM 328 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~---~g~~i~ 328 (647)
....++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||. |++..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4456899999999999999999999999999999999999999999999999999999999997 999887 899999
Q ss_pred EccCcchh
Q 006398 329 VKPSEAEK 336 (647)
Q Consensus 329 v~~~~~~~ 336 (647)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99886544
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.60 E-value=1.7e-15 Score=132.96 Aligned_cols=83 Identities=30% Similarity=0.433 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+...
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 7654
No 104
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.5e-15 Score=123.74 Aligned_cols=86 Identities=28% Similarity=0.439 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999999988 588999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
|+..+..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 105
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=125.48 Aligned_cols=79 Identities=27% Similarity=0.511 Sum_probs=75.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.++.++|||||+|.+.++|..|++ |++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999996 9999999999999876
No 106
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.3e-15 Score=122.49 Aligned_cols=85 Identities=31% Similarity=0.495 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999985 8899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 006398 437 TDQSGL 442 (647)
Q Consensus 437 ~~~~~~ 442 (647)
..+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887653
No 107
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.60 E-value=7.7e-16 Score=136.36 Aligned_cols=122 Identities=26% Similarity=0.383 Sum_probs=80.1
Q ss_pred EEEEEecccccHHHHHH-hcCCccCCceEEEccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 006398 300 VGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR 378 (647)
Q Consensus 300 ~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~ 378 (647)
++|++|.+...+..||+ ++|....|..- +.+. ...+.....++|||+|||+.+++++|+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~-------------------~~~~~~~~~~~l~V~nLp~~~te~~L~ 65 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG-------------------RPPPDVEGMTSLKVDNLTYRTSPDTLR 65 (135)
T ss_dssp ------------------------------CCSC-------------------CSCSSGGGCCCEEEECCCSSCHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC-------------------CCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67777888888888886 87766655431 1111 111223446899999999999999999
Q ss_pred HhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 379 QVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 379 ~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|.|+.|.|.|+.....
T Consensus 66 ~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 66 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999988 4888999999999999999999999999999999999999987654
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.7e-15 Score=132.85 Aligned_cols=87 Identities=25% Similarity=0.395 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEE
Q 006398 251 DPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 329 (647)
Q Consensus 251 ~~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v 329 (647)
....+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||+ |||..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 344556899999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred ccCcchhh
Q 006398 330 KPSEAEKN 337 (647)
Q Consensus 330 ~~~~~~~~ 337 (647)
.++.....
T Consensus 97 ~~a~~~~~ 104 (126)
T 3ex7_B 97 DWCFVRGP 104 (126)
T ss_dssp EESEESSS
T ss_pred EEecCCCC
Confidence 98865443
No 109
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=128.54 Aligned_cols=81 Identities=21% Similarity=0.428 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++ |+|..|.|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999997 99999999999999886
Q ss_pred chh
Q 006398 334 AEK 336 (647)
Q Consensus 334 ~~~ 336 (647)
...
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 110
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=120.62 Aligned_cols=82 Identities=33% Similarity=0.544 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+..+|||+|||..+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 34689999999999999999999999999999999988 58899999999999999999999999999999999999998
Q ss_pred ecC
Q 006398 437 TDQ 439 (647)
Q Consensus 437 ~~~ 439 (647)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=126.23 Aligned_cols=83 Identities=24% Similarity=0.427 Sum_probs=77.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHh-cCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCc-cCCceEEEc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSR-AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQP-LLGQPVMVK 330 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~-~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~-~~g~~i~v~ 330 (647)
.+.++|||+|||+.+|+++|.++|.+ ||.|..|.|+.+. +|.++|||||+|.+.++|..||. |++.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999999 9999999999999 89999999999999999999997 99999 999999999
Q ss_pred cCcchhh
Q 006398 331 PSEAEKN 337 (647)
Q Consensus 331 ~~~~~~~ 337 (647)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 8865443
No 112
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=126.12 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ +|.++|||||+|.+.++|..||. |++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999998 79999999999999999999997 9999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 65443
No 113
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=128.23 Aligned_cols=84 Identities=32% Similarity=0.531 Sum_probs=78.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
..++|||+|||+.+++++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..|++ |+|..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34799999999999999999999999999999999999999999999999999999999997 99999999999999987
Q ss_pred chhhh
Q 006398 334 AEKNL 338 (647)
Q Consensus 334 ~~~~~ 338 (647)
.....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 65544
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=136.82 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcC--CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..++|||+|||+.+|+++|+++|..|| .|..|.|+.++.+|.++|||||+|.+.++|..||+ |||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999997 899999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+....
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 86543
No 115
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8e-15 Score=121.59 Aligned_cols=83 Identities=31% Similarity=0.489 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988 478899999999999999999999999999999999999
Q ss_pred Eeec
Q 006398 435 AVTD 438 (647)
Q Consensus 435 ~~~~ 438 (647)
|+..
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9764
No 116
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.1e-14 Score=126.10 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC-----CCccEEEEeCChHHHHHHHHHHcCce
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD-----SAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~-----~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
..+.++|||+|| |..++ +++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|..|+..|||..
T Consensus 37 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 37 GPEGCNLFIYHL--PQEFT--------DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp CCCSEEEEEECS--CTTCC--------HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 456789999999 77777 7999999999999999999654 47999999999999999999999999
Q ss_pred eCCeEEEEEEe
Q 006398 624 FAGKMITATFM 634 (647)
Q Consensus 624 ~~gr~i~v~~~ 634 (647)
|+|++|+|.|+
T Consensus 107 ~~g~~l~V~~a 117 (118)
T 2khc_A 107 VGTKRLKVQLK 117 (118)
T ss_dssp ETTEECCEEEC
T ss_pred ECCEEEEEEec
Confidence 99999999986
No 117
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=127.29 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|+++|.+||.| .|.|+.++ +|.++|||||+|.+.++|.+||++|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 455899999999999999999999999954 99999998 8999999999999999999999999999999999997764
Q ss_pred c
Q 006398 334 A 334 (647)
Q Consensus 334 ~ 334 (647)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=130.19 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=77.6
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCe-eEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKV-RDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i-~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|+++|..||.| ..|.|+.+. +|.++|||||+|.+.++|.+||++++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 899999998 899999999999999999999999999999999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76554
No 119
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=4.5e-15 Score=120.32 Aligned_cols=80 Identities=39% Similarity=0.655 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999888 68889999999999999999999999999999999999997
Q ss_pred e
Q 006398 437 T 437 (647)
Q Consensus 437 ~ 437 (647)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.5e-15 Score=123.53 Aligned_cols=85 Identities=36% Similarity=0.596 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 356799999999999999999999999999999999988 5888999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987654
No 121
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=8.4e-16 Score=121.38 Aligned_cols=75 Identities=17% Similarity=0.310 Sum_probs=71.8
Q ss_pred eEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 258 TVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 258 ~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
+|||+|||+.+|+++|.++|++||.|..|.++.++.+|.++|||||+|.+.++|..|+++++..+.|+.|.|+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999998753
No 122
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-14 Score=122.65 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|++..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34557899999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876543
No 123
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=123.89 Aligned_cols=79 Identities=35% Similarity=0.542 Sum_probs=74.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++. |.++|||||+|.+.++|.+||+ |++..|.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3558999999999999999999999999999999999986 8999999999999999999997 9999999999999876
Q ss_pred c
Q 006398 333 E 333 (647)
Q Consensus 333 ~ 333 (647)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=6.5e-15 Score=131.54 Aligned_cols=86 Identities=28% Similarity=0.453 Sum_probs=79.7
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
.....++|||+|||+.+|+++|+++|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred cCcchhh
Q 006398 331 PSEAEKN 337 (647)
Q Consensus 331 ~~~~~~~ 337 (647)
++.....
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 8865543
No 125
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.9e-15 Score=124.38 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|.|+.|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 4456899999999999999999999999999999999999999999999999999999999998 577899999999988
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 65543
No 126
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=4e-15 Score=128.04 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
..+|||+|||+.+++++|+++|.+||.|..|.|+.+.. .++|||||+|.+.++|.+||..|+|..|+|+.|.|.++...
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 56899999999999999999999999999999988743 37999999999999999999999999999999999998765
Q ss_pred CC
Q 006398 440 SG 441 (647)
Q Consensus 440 ~~ 441 (647)
..
T Consensus 84 ~~ 85 (115)
T 4f25_A 84 KE 85 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 127
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-14 Score=123.65 Aligned_cols=87 Identities=29% Similarity=0.442 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 354 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 354 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
.......++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|++ .|.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 334566899999999999999999999999999999999998 5788999999999999999999999998 89999999
Q ss_pred EEEeecCCC
Q 006398 433 VSAVTDQSG 441 (647)
Q Consensus 433 v~~~~~~~~ 441 (647)
|.++.....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976544
No 128
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=121.98 Aligned_cols=84 Identities=27% Similarity=0.534 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||+ |++..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 356799999999999999999999999999999999988 578899999999999999999999 899999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 129
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=123.65 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCC-cccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRR-SKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~-~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
..++|||+|||+.+|+++|.++|.+||.|..|.|+.+..++. ++|||||+|.+.++|..|++ |||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357999999999999999999999999999999999998766 99999999999999999997 9999999999999887
Q ss_pred cch
Q 006398 333 EAE 335 (647)
Q Consensus 333 ~~~ 335 (647)
.++
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 130
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=8.4e-15 Score=118.09 Aligned_cols=80 Identities=29% Similarity=0.571 Sum_probs=75.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
.+|||+|||+.+++++|.++|.+||.|..|.++.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999988 68899999999999999999999999999999999999998765
Q ss_pred C
Q 006398 440 S 440 (647)
Q Consensus 440 ~ 440 (647)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=126.96 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=81.4
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
++|||+|||+.+|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++ |+|..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 78999999999999999997 9999999999999988655
Q ss_pred hhhcccccccCCCCCCCCCCCCCCCcEEEEcCCC
Q 006398 336 KNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLH 369 (647)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp 369 (647)
....... ...........|||+||+
T Consensus 76 ~~~~~~~---------~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFD---------RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCC---------SCCCSCCCCSCCCSCCCC
T ss_pred CCcccCC---------CCCccccCCCceecCCCC
Confidence 4221111 111122346789999996
No 132
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.5e-15 Score=123.60 Aligned_cols=86 Identities=29% Similarity=0.524 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567999999999999999999999999999999999984 88999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
++.....
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9887654
No 133
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=9.4e-15 Score=123.15 Aligned_cols=85 Identities=28% Similarity=0.486 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999988 8889999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 006398 437 TDQSGL 442 (647)
Q Consensus 437 ~~~~~~ 442 (647)
..+...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887643
No 134
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=5.5e-15 Score=136.00 Aligned_cols=139 Identities=21% Similarity=0.225 Sum_probs=79.3
Q ss_pred EEecccccHHHHHH-hcCCccC--CceEEEccCcchhhhcccccc-cCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHH
Q 006398 303 VEFYDVMSVPMAIA-LSGQPLL--GQPVMVKPSEAEKNLVQSNSS-IAGASGGGTGPYSGGARRLYVGNLHFNMTEDQLR 378 (647)
Q Consensus 303 V~f~~~~~a~~al~-~~g~~~~--g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~v~nLp~~~~e~~l~ 378 (647)
.+|.+.++|..|+. +++.... |+.+.+............... ................++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67888899999986 7765554 554444332111100000000 0000011122234557899999999999999999
Q ss_pred HhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCCC
Q 006398 379 QVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 379 ~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 441 (647)
++|.+||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999988 5889999999999999999999999999999999999999987654
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=125.75 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=73.0
Q ss_pred CCCcceEEeccCCCCCC-CCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcC--ceeC
Q 006398 549 GVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG--RWFA 625 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~-~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG--~~~~ 625 (647)
..++++|||+|| |.. ++ +++|.++|+.||.|..|.|++ ++|+|||+|.+.++|..|+..||| ..|.
T Consensus 22 ~~p~~~l~V~NL--p~~~~t--------e~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHLSNL--PHSGYS--------DSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEEESC--CCSSCC--------SHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEEeCC--CCccCC--------HHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 557889999999 776 66 599999999999999999965 689999999999999999999975 5599
Q ss_pred CeEEEEEEeCchhhhccCC
Q 006398 626 GKMITATFMVPQTYEAKFP 644 (647)
Q Consensus 626 gr~i~v~~~~~~~~~~~~~ 644 (647)
|++|.|+|+....-...-|
T Consensus 91 Gr~l~V~~a~~~~~~~~~~ 109 (112)
T 1x4f_A 91 GRCVKVDLSEKYKKLVSGP 109 (112)
T ss_dssp SSCCEEEEECSCSSSSCCC
T ss_pred CEEEEEEECccccccccCC
Confidence 9999999997655444333
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=2.2e-15 Score=128.26 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=74.9
Q ss_pred CCCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEcc
Q 006398 252 PERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331 (647)
Q Consensus 252 ~~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~ 331 (647)
.....++|||+|||+.+|+++|.++|..||.|..|.|+.+..+|.++|||||+|.+.++|..||...+..|.|+.|.|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999667999999999988
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+.+.
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7543
No 137
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.4e-15 Score=121.46 Aligned_cols=84 Identities=46% Similarity=0.833 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999988 47889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 88764
No 138
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-15 Score=124.27 Aligned_cols=87 Identities=33% Similarity=0.504 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 355 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 355 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
+.....++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456799999999999999999999999999999999988 47889999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 006398 434 SAVTDQSG 441 (647)
Q Consensus 434 ~~~~~~~~ 441 (647)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987654
No 139
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=8.7e-15 Score=121.59 Aligned_cols=82 Identities=24% Similarity=0.481 Sum_probs=77.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
+++|||+|||..+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 689999999999999999999999999999999988 5788999999999999999999999999999999999999987
Q ss_pred CCC
Q 006398 439 QSG 441 (647)
Q Consensus 439 ~~~ 441 (647)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 140
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=3.7e-15 Score=126.61 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=74.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.+. +|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999 89999999999999999999997 9999999999999876
Q ss_pred c
Q 006398 333 E 333 (647)
Q Consensus 333 ~ 333 (647)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 141
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=128.82 Aligned_cols=85 Identities=18% Similarity=0.379 Sum_probs=78.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCee--------EEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVR--------DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLL 323 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~ 323 (647)
..+.++|||+|||+.+|+++|+++|.+||.|. .|.|+.++.+|.++|||||+|.+.++|..||+ |++..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 69999999999999999999999999999997 9999999
Q ss_pred CceEEEccCcchhh
Q 006398 324 GQPVMVKPSEAEKN 337 (647)
Q Consensus 324 g~~i~v~~~~~~~~ 337 (647)
|+.|.|.++.....
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999998865443
No 142
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4e-15 Score=128.86 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||+ |||..|.|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4466899999999999999999999999999999999999999999999999999999999997 999999999999987
Q ss_pred C
Q 006398 332 S 332 (647)
Q Consensus 332 ~ 332 (647)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 143
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.6e-14 Score=120.44 Aligned_cols=86 Identities=34% Similarity=0.517 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 355 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 355 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
......++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|+|..|+|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999988544 79999999999999999999999999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9987654
No 144
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.4e-16 Score=124.36 Aligned_cols=79 Identities=16% Similarity=0.318 Sum_probs=74.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..|+. |||..|.|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356899999999999999999999999999999999999999999999999999999999997 9999999999988654
No 145
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=122.44 Aligned_cols=83 Identities=31% Similarity=0.486 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+..+.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34557899999999999999999999999999999999987788999999999999999999999999999999999999
Q ss_pred eec
Q 006398 436 VTD 438 (647)
Q Consensus 436 ~~~ 438 (647)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 753
No 146
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.5e-15 Score=123.51 Aligned_cols=86 Identities=34% Similarity=0.616 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999999988 578889999999999999999999999999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9988764
No 147
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=1.6e-14 Score=122.24 Aligned_cols=84 Identities=24% Similarity=0.457 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC---eEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG---RAIKVS 434 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g---~~i~v~ 434 (647)
...++|||+|||+.+++++|.++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+||..|+|..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45799999999999999999999999999999999998889999999999999999999999999999988 999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
|+.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987664
No 148
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=126.69 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=72.6
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcC--ceeCC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG--RWFAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG--~~~~g 626 (647)
..++++|||+|| |..++ +++|.++|++||.|..|.|+.. +|+|||+|.+.++|..|+..|+| ..|.|
T Consensus 28 ~~ps~~LfVgNL--p~~vt--------e~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 28 GVPSRVIHIRKL--PIDVT--------EGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SSCCSEEEEESC--CTTCC--------HHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457889999999 77777 7999999999999999999764 89999999999999999999985 68999
Q ss_pred eEEEEEEeCchhhh
Q 006398 627 KMITATFMVPQTYE 640 (647)
Q Consensus 627 r~i~v~~~~~~~~~ 640 (647)
++|.|.|+.+....
T Consensus 97 r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 97 QPIYIQFSNHKELK 110 (119)
T ss_dssp BCCEEEECSSSSCC
T ss_pred eEEEEEEccCCCCC
Confidence 99999999876653
No 149
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=119.51 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=71.3
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|..|++ ++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999998 66 9999999999765
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=132.16 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=77.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
....++|||+|||+.+|+++|.++|..||.|..+.++.+..+|.++|||||+|.+.++|.+||.||+..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34568999999999999999999999999999978888888999999999999999999999999999999999999988
Q ss_pred cchh
Q 006398 333 EAEK 336 (647)
Q Consensus 333 ~~~~ 336 (647)
....
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6554
No 151
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=125.89 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=74.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeE-EEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRD-VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~-v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~ 332 (647)
...++|||+|||+.+|+++|+++|.+||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.+++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 35689999999999999999999999999997 888888 7899999999999999999999988999999999999876
Q ss_pred cc
Q 006398 333 EA 334 (647)
Q Consensus 333 ~~ 334 (647)
..
T Consensus 92 ~~ 93 (104)
T 1wg5_A 92 SR 93 (104)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 152
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=1.2e-14 Score=123.47 Aligned_cols=82 Identities=27% Similarity=0.471 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ee
Q 006398 436 VT 437 (647)
Q Consensus 436 ~~ 437 (647)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 153
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.7e-15 Score=123.08 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=71.5
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCce--eCC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW--FAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~--~~g 626 (647)
..|+++|||+|| |..++ +++|.++|++||.|..|.|++ .+|+|||+|.+.++|..|+..|||.. |.|
T Consensus 12 ~~p~~~l~V~nL--p~~~t--------e~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 12 VSVSPVVHVRGL--CESVV--------EADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCCSEEEEESC--CSSCC--------HHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 357789999999 77777 799999999999999999866 58999999999999999999998754 999
Q ss_pred eEEEEEEeCchhh
Q 006398 627 KMITATFMVPQTY 639 (647)
Q Consensus 627 r~i~v~~~~~~~~ 639 (647)
++|.|+|+.....
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 9999999987654
No 154
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=123.25 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=75.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+..+ ++|||||+|.+.++|..||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 446689999999999999999999999999999999998654 68999999999999999997 999999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+....
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 86644
No 155
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=1.2e-15 Score=125.23 Aligned_cols=80 Identities=34% Similarity=0.599 Sum_probs=72.8
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCcch
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSEAE 335 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~~~ 335 (647)
++|||+|||+.+++++|.++|.+||.|..|.++.++.+|.++|||||+|.+.+ |..|+. |||..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 999997 9999999999999988654
Q ss_pred hh
Q 006398 336 KN 337 (647)
Q Consensus 336 ~~ 337 (647)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 156
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=124.75 Aligned_cols=82 Identities=32% Similarity=0.455 Sum_probs=76.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++ +|.++|||||+|.+.++|..||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999998 49999999999999999999997 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+...
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 7543
No 157
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=6.6e-15 Score=124.43 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCCCCeEEEecCCCCC------CHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCc
Q 006398 253 ERDQRTVFAYQICLKA------DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ 325 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~------t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~ 325 (647)
....++|||+|||+.+ |+++|..+|++||.|..|.|+ ..+|.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 889999999999999999988 4679999999999999999999997 999999998
Q ss_pred -eEEEccCcc
Q 006398 326 -PVMVKPSEA 334 (647)
Q Consensus 326 -~i~v~~~~~ 334 (647)
.|.|.++..
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999988753
No 158
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-14 Score=122.61 Aligned_cols=86 Identities=29% Similarity=0.527 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcC------CceecC
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNG------QLEIVG 428 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~------g~~~~g 428 (647)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456789999999999999999999999999999999988 578899999999999999999999999 999999
Q ss_pred eEEEEEEeecCCC
Q 006398 429 RAIKVSAVTDQSG 441 (647)
Q Consensus 429 ~~i~v~~~~~~~~ 441 (647)
+.|.|.++..+..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987654
No 159
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=5.5e-15 Score=124.14 Aligned_cols=84 Identities=30% Similarity=0.508 Sum_probs=70.9
Q ss_pred cceEEeccCC-CCCCCCc--------------hhhhhhHHHHHHHHh-hhcCCeEEEEEeeC----CCccEEEEeCChHH
Q 006398 552 SECLLLKNMF-DPKNETY--------------EEFDMDIKEDVEGEC-SKFGKLKHIFVEKD----SAGFVYLRFENTQS 611 (647)
Q Consensus 552 ~~~l~V~nl~-~p~~~~d--------------~~~~~~~~~dl~~~F-~~fG~V~~v~i~~~----~~G~afV~F~~~e~ 611 (647)
++||+|.||+ .|...+. .+.+.+|++||..+| ++||.|..|.|+.+ ++|+|||+|.++++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4689999997 5654432 134567889999999 99999999999765 48999999999999
Q ss_pred HHHHHHHHcCceeCCeEEEEEEeC
Q 006398 612 AFAAQRALHGRWFAGKMITATFMV 635 (647)
Q Consensus 612 A~~A~~~lnG~~~~gr~i~v~~~~ 635 (647)
|.+|+..|||+.|+|++|.|.|++
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999975
No 160
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=131.68 Aligned_cols=83 Identities=13% Similarity=0.291 Sum_probs=76.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeE--EEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCC----ccCCc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRD--VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQ----PLLGQ 325 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~--v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~----~~~g~ 325 (647)
....++|||+|||+.+|+++|+++|.+||.|.. |.|+.++.||.++|||||+|.+. +|..||. |+|. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999966 99999999999999999999999 9999997 9999 99999
Q ss_pred eEEEccCcchh
Q 006398 326 PVMVKPSEAEK 336 (647)
Q Consensus 326 ~i~v~~~~~~~ 336 (647)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999886543
No 161
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-14 Score=120.03 Aligned_cols=85 Identities=32% Similarity=0.454 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+..+ ++|||||+|.+.++|.+|+..|++..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4456799999999999999999999999999999999988433 589999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987654
No 162
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=125.04 Aligned_cols=84 Identities=31% Similarity=0.468 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||+.+++++|.++|++||.|..|.|+.+.+|.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44689999999999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 163
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=125.17 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=75.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
...++|||+|||+.+|+++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|.+||. |+|..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345899999999999999999999999999999999999999999999999999999999995 9999999999999887
Q ss_pred cc
Q 006398 333 EA 334 (647)
Q Consensus 333 ~~ 334 (647)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 164
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.4e-15 Score=125.59 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCC-eeEEEEe-eeCCCCCcccEEEEEecccccHHHHHH-hc--CCccCCceEE
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGK-VRDVRLI-MDRNSRRSKGVGYVEFYDVMSVPMAIA-LS--GQPLLGQPVM 328 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~-i~~v~~~-~~~~tg~~~g~afV~f~~~~~a~~al~-~~--g~~~~g~~i~ 328 (647)
.+.++|||+|||+.+|+++|.++|.+||. |..|.++ .+..+|.++|||||+|.+.++|..|+. |+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999998 788899999999999999999999997 85 5899999999
Q ss_pred EccCcchhh
Q 006398 329 VKPSEAEKN 337 (647)
Q Consensus 329 v~~~~~~~~ 337 (647)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999876544
No 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=8.9e-15 Score=121.56 Aligned_cols=84 Identities=26% Similarity=0.516 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEE-EeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELV-QLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v-~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.+.++|||+|||+.+++++|.++|++||.|..| .|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 347899999999999999999999999999999 89888 6888999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 166
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2e-14 Score=122.04 Aligned_cols=86 Identities=28% Similarity=0.536 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC--CCCcceEEEEEeCCHHHHHHHHHHc-CCceecCeEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TGHCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIK 432 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~--~g~~~g~afVef~~~~~A~~Al~~l-~g~~~~g~~i~ 432 (647)
.....++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..| ++..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 44567999999999999999999999999999999999873 8889999999999999999999999 99999999999
Q ss_pred EEEeecCCC
Q 006398 433 VSAVTDQSG 441 (647)
Q Consensus 433 v~~~~~~~~ 441 (647)
|.|+.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 167
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.2e-15 Score=121.18 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=74.9
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|+++|..| .|..|.|+.+ .+|.++|||||+|.+.++|..||.|++..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 356899999999999999999999999 9999999999 78999999999999999999999999999999999998875
Q ss_pred ch
Q 006398 334 AE 335 (647)
Q Consensus 334 ~~ 335 (647)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 44
No 168
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.57 E-value=8.3e-15 Score=115.86 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.+.-|+|+||++.+++++|+++|.+||+|..+.++. ++|||||+|.+.++|.+|+..||+..++|+.|.|.+|.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 367899999999999999999999999999999876 499999999999999999999999999999999999853
No 169
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.56 E-value=2e-14 Score=123.81 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. ++.++|||||+|.+.++|.+||..|++..|.|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999884 8899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
..+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87654
No 170
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4e-15 Score=128.39 Aligned_cols=83 Identities=25% Similarity=0.437 Sum_probs=77.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||.+++..|.|+.|.|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 45899999999999999999999999999999999999999999999999999999999998899999999999998865
Q ss_pred hhh
Q 006398 335 EKN 337 (647)
Q Consensus 335 ~~~ 337 (647)
...
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 171
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=7e-15 Score=121.15 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+ +|.++|||||+|.+.++|..|+. |++..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999974 78999999999999999999997 9999999999999887
Q ss_pred cch
Q 006398 333 EAE 335 (647)
Q Consensus 333 ~~~ 335 (647)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 544
No 172
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=120.71 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=77.0
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---CCccEEEEeCChHHHHHHHHHHcCceeC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFA 625 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~---~~G~afV~F~~~e~A~~A~~~lnG~~~~ 625 (647)
..+.++|||.|| |..++ +++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|..|+..|||..|+
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNI--PFRFR--------DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESC--CTTCC--------HHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346789999999 77777 7999999999999999999754 4899999999999999999999999999
Q ss_pred CeEEEEEEeCchhhhccCCC
Q 006398 626 GKMITATFMVPQTYEAKFPD 645 (647)
Q Consensus 626 gr~i~v~~~~~~~~~~~~~~ 645 (647)
|++|.|.|+.+......-|.
T Consensus 82 g~~l~v~~a~~~~~~~~~~~ 101 (103)
T 2cq3_A 82 GRKIEVNNATARVMTNSGPS 101 (103)
T ss_dssp TEECEEEECCSSCCCCCSSC
T ss_pred CEEEEEEEcccCCCCCCCCC
Confidence 99999999998876655443
No 173
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-15 Score=127.57 Aligned_cols=81 Identities=28% Similarity=0.415 Sum_probs=73.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeC-CCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDR-NSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~ 331 (647)
....++|||+|||+.+|+++|.++|..|| |..|.|+.+. .+|.++|||||+|.+.++|..||.|+|..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34568999999999999999999999999 9999999998 689999999999999999999999999999999999988
Q ss_pred Ccc
Q 006398 332 SEA 334 (647)
Q Consensus 332 ~~~ 334 (647)
+..
T Consensus 95 a~~ 97 (100)
T 2j76_E 95 ADQ 97 (100)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 174
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.4e-15 Score=125.64 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
...+|||+|||+.+|+++|+++|..| .|..|.|+.++. |.++|||||+|.+.++|.+||++|+..|.|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 34799999999999999999999999 899999999986 9999999999999999999999999999999999988765
Q ss_pred hh
Q 006398 335 EK 336 (647)
Q Consensus 335 ~~ 336 (647)
..
T Consensus 93 ~~ 94 (109)
T 2dnn_A 93 RQ 94 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 175
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=4.2e-15 Score=128.38 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=76.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCC---eeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGK---VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 330 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~ 330 (647)
...++|||+|||+.+|+++|+++|..||. |..|.|+.+.. |.++|||||+|.+.++|.+||++++..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 35689999999999999999999999998 89999999987 999999999999999999999999999999999998
Q ss_pred cCcchh
Q 006398 331 PSEAEK 336 (647)
Q Consensus 331 ~~~~~~ 336 (647)
++....
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886544
No 176
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=119.76 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCce--ecCeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLE--IVGRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~--~~g~~i~v~ 434 (647)
..++++|||+|||+.+++++|.++|++||.|..|.+++. +|+|||+|.+.++|.+|+..|++.. |.|+.|.|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 356799999999999999999999999999999999864 7899999999999999999988764 789999999
Q ss_pred EeecCC
Q 006398 435 AVTDQS 440 (647)
Q Consensus 435 ~~~~~~ 440 (647)
|++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 987654
No 177
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.56 E-value=5.2e-15 Score=129.36 Aligned_cols=80 Identities=26% Similarity=0.483 Sum_probs=76.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
..++|||+|||+.+|+++|.++|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||+|+|..|.|+.|.|.++..
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999988753
No 178
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=2.3e-15 Score=124.89 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~~ 333 (647)
..++|||+|||+.+|+++|+++|.+||.|..+.++.+..+|.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 35899999999999999999999999999999999999999999999999999999999997 99999999999998764
No 179
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=6.8e-15 Score=135.40 Aligned_cols=85 Identities=25% Similarity=0.352 Sum_probs=78.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|..+|.+||.|..|.|+.++.+|.++|||||+|.+.++|..||. |||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred Ccchhh
Q 006398 332 SEAEKN 337 (647)
Q Consensus 332 ~~~~~~ 337 (647)
+.....
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 865443
No 180
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=2e-14 Score=122.75 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
....++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 355789999999999999999999999999999999988 5888999999999999999999999999999999999999
Q ss_pred eecCC
Q 006398 436 VTDQS 440 (647)
Q Consensus 436 ~~~~~ 440 (647)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98764
No 181
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=122.86 Aligned_cols=83 Identities=24% Similarity=0.436 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45789999999999999999999999999999999988 57899999999999999999999999999999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
..+.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8754
No 182
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=125.44 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=73.8
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~ 630 (647)
..++|||+|| |..++ +++|.++|+.||.|..|.|+. ++|+|||+|.+.++|..|+..|||..|.|++|.
T Consensus 9 ~~~~l~V~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 9 SKTVILAKNL--PAGTL--------AAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp EEEEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 4679999999 77777 799999999999999999864 789999999999999999999999999999999
Q ss_pred EEEeCchhhhcc
Q 006398 631 ATFMVPQTYEAK 642 (647)
Q Consensus 631 v~~~~~~~~~~~ 642 (647)
|.|+....|...
T Consensus 78 V~~a~~~~~~~~ 89 (111)
T 1whx_A 78 LEWAPIGVFGAA 89 (111)
T ss_dssp EEEEETTTTCCC
T ss_pred EEECCCCccCCC
Confidence 999998877543
No 183
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.7e-14 Score=119.41 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
...+.++|||+|||+.+++++|+++|.+|| |..|.|+.+ .++.++|||||+|.+.++|.+|| .|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345679999999999999999999999997 999999988 47899999999999999999999 899999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 184
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=8.4e-15 Score=133.58 Aligned_cols=84 Identities=19% Similarity=0.394 Sum_probs=78.8
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |++..|.|+.|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3466899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+....
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 86543
No 185
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=126.46 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee--CCCccEEEEeCChHHHHHHHHHHcCceeCC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK--DSAGFVYLRFENTQSAFAAQRALHGRWFAG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~--~~~G~afV~F~~~e~A~~A~~~lnG~~~~g 626 (647)
..++++|||+|| |..++ ..+|.+.|.++|+.||.|..|.+.. .++|||||+|.+.++|..|+..|||..|.|
T Consensus 26 ~~p~~~LfV~nL--~~~~~----e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNI--NPEVP----KEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESC--CTTSC----HHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCC--CCCCC----HHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 346779999999 66655 2234456778999999999998864 478999999999999999999999999999
Q ss_pred eEEEEEEeCchhh
Q 006398 627 KMITATFMVPQTY 639 (647)
Q Consensus 627 r~i~v~~~~~~~~ 639 (647)
++|.|.|+.....
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999976544
No 186
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7e-15 Score=122.09 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=72.6
Q ss_pred CCCeEEEecCCCCCCHHHHH----HHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEE
Q 006398 255 DQRTVFAYQICLKADERDVY----EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 329 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v 329 (647)
...+|||+|||+.+++++|+ ++|.+||.|..|.|+.++.+ +|||||+|.+.++|.+||+ |||..|.|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45799999999999999999 99999999999999998875 8999999999999999997 9999999999999
Q ss_pred ccCcch
Q 006398 330 KPSEAE 335 (647)
Q Consensus 330 ~~~~~~ 335 (647)
.++.+.
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 987543
No 187
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=120.68 Aligned_cols=84 Identities=26% Similarity=0.481 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC----CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE----TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~----~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 346899999999999999999999999999999998773 4478999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 006398 434 SAVTDQSG 441 (647)
Q Consensus 434 ~~~~~~~~ 441 (647)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 188
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=120.72 Aligned_cols=82 Identities=29% Similarity=0.391 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE--------EEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL--------VQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~--------v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
...+..+|||+|||+.+++++|+++|++||.|.. |.|+.+ .+|.++|||||+|.+.++|.+|++.|+|..|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999998 999888 5889999999999999999999999999999
Q ss_pred cCeEEEEEEee
Q 006398 427 VGRAIKVSAVT 437 (647)
Q Consensus 427 ~g~~i~v~~~~ 437 (647)
.|+.|.|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 189
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.6e-14 Score=116.56 Aligned_cols=82 Identities=21% Similarity=0.342 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.....+|||+|||+.+++++|+++|..| .|..|.|+.+.+|.++|||||+|.+.++|.+||. |+|..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3557899999999999999999999999 8999999988889999999999999999999999 9999999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
....
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7764
No 190
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-14 Score=122.30 Aligned_cols=84 Identities=52% Similarity=0.911 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
....++|||+|||..+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 355789999999999999999999999999999999888 5788999999999999999999999999999999999999
Q ss_pred eecCC
Q 006398 436 VTDQS 440 (647)
Q Consensus 436 ~~~~~ 440 (647)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 87754
No 191
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=4.3e-15 Score=130.88 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=76.4
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCC---eeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGK---VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 330 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~ 330 (647)
...++|||+|||+.+|+++|+++|.+||. |..|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 34689999999999999999999999999 89999999988 999999999999999999999999999999999998
Q ss_pred cCcchh
Q 006398 331 PSEAEK 336 (647)
Q Consensus 331 ~~~~~~ 336 (647)
++....
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 876543
No 192
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=118.33 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
....+|||+|||+.+++++|+ ++|++||.|..|.|+.+..+ +|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 446899999999999999999 99999999999999988554 889999999999999999999999999999999
Q ss_pred EEeecCC
Q 006398 434 SAVTDQS 440 (647)
Q Consensus 434 ~~~~~~~ 440 (647)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9997654
No 193
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=118.95 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=66.6
Q ss_pred CeEEEecCCCCC------CHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCc-eEE
Q 006398 257 RTVFAYQICLKA------DERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQ-PVM 328 (647)
Q Consensus 257 ~~v~v~~Lp~~~------t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~-~i~ 328 (647)
++|||+|||+.+ |+++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|..|+. |||..|.|+ +|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999987 4678999999999999999999997 999999999 887
Q ss_pred E
Q 006398 329 V 329 (647)
Q Consensus 329 v 329 (647)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 194
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=121.05 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceecCeEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~--g~~~~g~~i~v~~ 435 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|++.|+ +..|.|+.|.|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45789999999999999999999999999999999875 7999999999999999999775 4789999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987654
No 195
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=119.49 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ--LEIVGRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g--~~~~g~~i~v~ 434 (647)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.. +|||||+|.+.++|.+|+..|++ ..|.|+.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456789999999999999999999999999999998864 79999999999999999998764 56999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
|+..+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987654
No 196
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=121.77 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcc-CCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCce-ecCeEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEP-FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLE-IVGRAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~-~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~-~~g~~i~v~~ 435 (647)
.+..+|||+|||+.+++++|+++|.+ ||.|..|.|+.+.++.++|||||+|.+.++|.+||..|++.. |+|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45789999999999999999999999 999999999998888999999999999999999999999999 9999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 977654
No 197
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5e-14 Score=118.89 Aligned_cols=83 Identities=23% Similarity=0.496 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-C-CCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-T-GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~-g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
..+.++|||+|||+.+++++|+++|..|| |..|.|+.+. + +.++|||||+|.+.++|.+|| .|++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35579999999999999999999999999 9999999884 4 889999999999999999999 999999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
++..+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 198
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=119.93 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.7
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeC--Ce
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA--GK 627 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~--gr 627 (647)
.++++|||.|| |..++ +++|.++|+.||.|..|.+... +|+|||+|.+.++|+.|+..|||..|. |+
T Consensus 15 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 15 NPTTRLWVGGL--GPNTS--------LAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCSCEEEECC--CSSCC--------HHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 46679999999 77777 7999999999999999999764 899999999999999999999999999 99
Q ss_pred EEEEEEeCch
Q 006398 628 MITATFMVPQ 637 (647)
Q Consensus 628 ~i~v~~~~~~ 637 (647)
+|.|.|+.+.
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999998764
No 199
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=2.1e-14 Score=125.49 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=76.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
....++|||+|||+.+++++|+++|..||.|..|.|+.+. +|.++|||||+|.+.++|..|+. |+|..|.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4466899999999999999999999999999999999998 89999999999999999999997 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+...
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 7643
No 200
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=126.83 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=76.9
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCC---eeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEE
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGK---VRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v 329 (647)
....++|||+|||+.+|+++|+++|..||. |..|.|+.++. |.++|||||+|.+.++|.+||.+++..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 345689999999999999999999999998 89999999988 99999999999999999999999999999999999
Q ss_pred ccCcchh
Q 006398 330 KPSEAEK 336 (647)
Q Consensus 330 ~~~~~~~ 336 (647)
.++....
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 8887544
No 201
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=2.2e-14 Score=118.12 Aligned_cols=83 Identities=33% Similarity=0.534 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+. .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4578999999999999999999999999999999987 478889999999999999999999999999999999999987
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
....
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 202
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.8e-14 Score=121.58 Aligned_cols=86 Identities=27% Similarity=0.386 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEE--------EEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--------LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
.....++|||+|||+.+++++|+++|.+||.|. .|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999998 6999988 6899999999999999999999999999999
Q ss_pred cCeEEEEEEeecCCC
Q 006398 427 VGRAIKVSAVTDQSG 441 (647)
Q Consensus 427 ~g~~i~v~~~~~~~~ 441 (647)
.|+.|.|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999887664
No 203
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=8.9e-15 Score=126.69 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCee--EEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEcc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVR--DVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKP 331 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~--~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~ 331 (647)
....+|||+|||+.+|+++|+++|.+| .|. .|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 345799999999999999999999999 566 899999988 9999999999999999999999888999999999987
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+...
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7543
No 204
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=3.2e-15 Score=122.55 Aligned_cols=81 Identities=21% Similarity=0.391 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.+|||+|||+.+++++|+++|++|| .|..|.|+.+ .+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 9999999988 589999999999999999999999999999999999999988
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 205
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3.7e-14 Score=119.54 Aligned_cols=84 Identities=26% Similarity=0.330 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE-EEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
......+|||+|||+.+++++|+++|.+||.|.. |.|+.+.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3455789999999999999999999999999987 8888888999999999999999999999997 9999999999999
Q ss_pred EeecCC
Q 006398 435 AVTDQS 440 (647)
Q Consensus 435 ~~~~~~ 440 (647)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 206
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=123.63 Aligned_cols=80 Identities=24% Similarity=0.434 Sum_probs=73.4
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCcc--------C
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPL--------L 323 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~--------~ 323 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|..||. |||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999998 89999999999999999999997 999999 5
Q ss_pred CceEEEccCc
Q 006398 324 GQPVMVKPSE 333 (647)
Q Consensus 324 g~~i~v~~~~ 333 (647)
+++|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 6778887765
No 207
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-14 Score=117.12 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHc--CCceecCeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN--GQLEIVGRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l--~g~~~~g~~i~v~ 434 (647)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| ++..|.|+.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 456789999999999999999999999999999998875 899999999999999999976 5788999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
|+.....
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987654
No 208
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.54 E-value=4.9e-15 Score=123.97 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecC-eE
Q 006398 359 GARRLYVGNLHF------NMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG-RA 430 (647)
Q Consensus 359 ~~~~l~v~nLp~------~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g-~~ 430 (647)
..++|||+|||+ .+++++|.++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 9999999999999999999999988 479999999999999999999999999999999 99
Q ss_pred EEEEEeecC
Q 006398 431 IKVSAVTDQ 439 (647)
Q Consensus 431 i~v~~~~~~ 439 (647)
|.|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998754
No 209
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.54 E-value=2.4e-14 Score=121.37 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCcee---cCeEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEI---VGRAI 431 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~---~g~~i 431 (647)
.....++|||+|||..+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999998 4788999999999999999999999999887 89999
Q ss_pred EEEEeecCCC
Q 006398 432 KVSAVTDQSG 441 (647)
Q Consensus 432 ~v~~~~~~~~ 441 (647)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 210
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=120.55 Aligned_cols=83 Identities=28% Similarity=0.402 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEE-EEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeE----E
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVE-LVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA----I 431 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~-~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~----i 431 (647)
.+.++|||+|||+.+++++|+++|++||.|. .|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4579999999999999999999999999999 9999988 48899999999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 006398 432 KVSAVTDQS 440 (647)
Q Consensus 432 ~v~~~~~~~ 440 (647)
.|.|+....
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999987654
No 211
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=125.05 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCCCCCHHHHH---HHHHhcCCeeEEEEeeeCCCC---CcccEEEEEecccccHHHHHH-hcCCccCCce
Q 006398 254 RDQRTVFAYQICLKADERDVY---EFFSRAGKVRDVRLIMDRNSR---RSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP 326 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~---~~f~~~G~i~~v~~~~~~~tg---~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~ 326 (647)
.+.++|||+|||+.+++++|. ++|.+||.|..|.|+.+..++ .++|||||+|.+.++|.+||+ |||..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 999999999999999988754 456999999999999999997 9999999999
Q ss_pred EEEccCcchh
Q 006398 327 VMVKPSEAEK 336 (647)
Q Consensus 327 i~v~~~~~~~ 336 (647)
|.|.++.+..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999886544
No 212
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=120.62 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....+|||+|||+.+++++|+++|.+||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345789999999999999999999999999987666655 6888999999999999999999999999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 213
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.4e-15 Score=122.86 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||+.+++++|.++|++||.|..|.|+.+..|.++|||||+|.+.++|.+||. +++..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34689999999999999999999999999999999998668899999999999999999999 89999999999999976
Q ss_pred cC
Q 006398 438 DQ 439 (647)
Q Consensus 438 ~~ 439 (647)
+.
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 214
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=9.3e-15 Score=122.92 Aligned_cols=81 Identities=32% Similarity=0.554 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|.++|.+||.|..|.|+.+. +|.++|||||+|.+.++|..|+. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 345899999999999999999999999999999999998 89999999999999999999999 9999999999998775
Q ss_pred chh
Q 006398 334 AEK 336 (647)
Q Consensus 334 ~~~ 336 (647)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 443
No 215
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=116.95 Aligned_cols=82 Identities=26% Similarity=0.558 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCC-cceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGH-CKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~-~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
..++|||+|||+.+++++|.++|++||.|..|.|+.+. ++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 36899999999999999999999999999999998874 333 7999999999999999999999999999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
....
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 216
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=121.03 Aligned_cols=87 Identities=26% Similarity=0.427 Sum_probs=80.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 354 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 354 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
.......++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||.. ++..|+|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 334566899999999999999999999999999999999998 5889999999999999999999998 99999999999
Q ss_pred EEEeecCCC
Q 006398 433 VSAVTDQSG 441 (647)
Q Consensus 433 v~~~~~~~~ 441 (647)
|.++..+..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987664
No 217
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=121.70 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
..+.++|||+|| |..++ +++|..+|+.||.|..|.|+.. +|+|||+|.+.++|..|+..|||..|+|++
T Consensus 22 ~~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 22 SPKNCTVYCGGI--ASGLT--------DQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CSSCCEEEEECC--SSCCC--------HHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 346779999999 77777 7999999999999999999775 899999999999999999999999999999
Q ss_pred EEEEEeCchhhhccCC
Q 006398 629 ITATFMVPQTYEAKFP 644 (647)
Q Consensus 629 i~v~~~~~~~~~~~~~ 644 (647)
|.|.|+.+..-....|
T Consensus 91 l~v~~a~~~~~~~~~~ 106 (109)
T 1x4g_A 91 VKCYWGKESPDMTSGP 106 (109)
T ss_dssp CEEECCCCCCSSCCCC
T ss_pred EEEEecCCCCCCCCCC
Confidence 9999998876544433
No 218
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.2e-14 Score=116.85 Aligned_cols=83 Identities=36% Similarity=0.668 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
...+.++|||+|||+.+++++|+++|.+||.| .++.+.++.++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 44568999999999999999999999999977 566667888999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987653
No 219
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.5e-14 Score=118.54 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|||+|||+.+++++|+++|.+||.|..|.|..+ +.++|||||+|.+.++|.+||+.|++..|+|+.|.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999999665 44789999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987654
No 220
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3.9e-14 Score=117.71 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=69.0
Q ss_pred CCCcceEEeccCCCCC-CCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCe
Q 006398 549 GVPSECLLLKNMFDPK-NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~-~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr 627 (647)
.+++++|||+|| |. .++ +++|..+|+.||.|..|.| ++|+|||+|.+.++|..|+..|||..|+|+
T Consensus 19 ~~~~~~l~V~nL--p~~~~t--------~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 19 SHMKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp CCTTCEEEEESC--CSSCCC--------HHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CCCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457789999999 76 666 6999999999999999999 479999999999999999999999999999
Q ss_pred EEEEEEeCc
Q 006398 628 MITATFMVP 636 (647)
Q Consensus 628 ~i~v~~~~~ 636 (647)
+|.|.|+..
T Consensus 86 ~l~V~~a~~ 94 (97)
T 2xnq_A 86 KLILEVSSS 94 (97)
T ss_dssp ECEEEECCC
T ss_pred EEEEEecCC
Confidence 999999865
No 221
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.7e-14 Score=126.58 Aligned_cols=85 Identities=29% Similarity=0.458 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|+|..|+|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999988 578899999999999999999999999999999999999
Q ss_pred EeecCC
Q 006398 435 AVTDQS 440 (647)
Q Consensus 435 ~~~~~~ 440 (647)
|+..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987754
No 222
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=121.96 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=72.2
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---CCccEEEEeCChHHHHHHHHHHcCceeC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---SAGFVYLRFENTQSAFAAQRALHGRWFA 625 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~---~~G~afV~F~~~e~A~~A~~~lnG~~~~ 625 (647)
..+.++|||+|| |..++ +++|.++|+.||.|..|.|..+ ++|+|||+|.+.++|..|+..|||..|+
T Consensus 26 ~~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNI--PFRFR--------DPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESC--CTTCC--------HHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECC--CCcCC--------HHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 446789999999 77777 7999999999999999999654 5899999999999999999999999999
Q ss_pred CeEEEEEEeCchh
Q 006398 626 GKMITATFMVPQT 638 (647)
Q Consensus 626 gr~i~v~~~~~~~ 638 (647)
|++|.|.|+.+..
T Consensus 96 g~~l~V~~a~~~~ 108 (109)
T 2err_A 96 GRKIEVNNATARV 108 (109)
T ss_dssp TEECEEEECCCSC
T ss_pred CEEEEEEECCCCc
Confidence 9999999987653
No 223
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=2.2e-14 Score=121.59 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcC-CeEEEEEe-eCCCccEEEEeCChHHHHHHHHHHcCceeCCe
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFG-KLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG-~V~~v~i~-~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr 627 (647)
.....|||+|| |..++ +++|.++|+.|| .|..+.|. ..++|+|||+|.+.++|+.|+..|||..|.|+
T Consensus 26 ~~~~~l~VgnL--p~~~t--------e~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 26 AKRYRITMKNL--PEGCS--------WQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CCCEEEEEECS--SCCCC--------HHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEECC--CCCCC--------HHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 35679999999 87777 799999999999 89999984 56899999999999999999999999999999
Q ss_pred EEEEEEeCch
Q 006398 628 MITATFMVPQ 637 (647)
Q Consensus 628 ~i~v~~~~~~ 637 (647)
+|.|.++...
T Consensus 96 ~i~V~~a~~~ 105 (111)
T 2jvr_A 96 VITVERDDNP 105 (111)
T ss_dssp EEEEEESCC-
T ss_pred EEEEEECCCC
Confidence 9999998654
No 224
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=1.6e-14 Score=139.90 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcC--CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAG--KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..++|||+|||+.+|+++|+++|.+|| .|..|.|+.++.||.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 99999999999999999999999999999999997 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 7644
No 225
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=116.35 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=72.3
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.+.++|||+|| |..++ +++|.++|+.||.|..|.|. +|+|||+|.+.++|..|+..|||..|.|++|
T Consensus 6 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNL--PREAT--------EQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESC--CSSCC--------HHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCeEEEEeCC--CCCCC--------HHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 46789999999 77777 79999999999999999997 6999999999999999999999999999999
Q ss_pred EEEEeCchhhhcc
Q 006398 630 TATFMVPQTYEAK 642 (647)
Q Consensus 630 ~v~~~~~~~~~~~ 642 (647)
.|.|+.+..-...
T Consensus 73 ~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 73 NVEASKNKSKASS 85 (90)
T ss_dssp EEECSSCCCCCCS
T ss_pred EEEECCCCCCCCC
Confidence 9999987655443
No 226
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.53 E-value=4.8e-14 Score=114.72 Aligned_cols=78 Identities=27% Similarity=0.577 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|++. ++..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999988 5799999999999999999999975 678899999999875
No 227
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=5.9e-15 Score=130.67 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=77.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|.++|.+||.|..|.|+.++.++.++|||||+|.+.++|..||. |+|..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999999999999999999999999999997 9999999999999987
Q ss_pred cch
Q 006398 333 EAE 335 (647)
Q Consensus 333 ~~~ 335 (647)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 228
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.53 E-value=3e-14 Score=124.87 Aligned_cols=85 Identities=25% Similarity=0.429 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
....++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||+.|+|..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345789999999999999999999999999999999988 4888999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987654
No 229
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.5e-14 Score=118.86 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC--CCccEEEEeCChHHHHHHHHHHcCceeCCe
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~--~~G~afV~F~~~e~A~~A~~~lnG~~~~gr 627 (647)
.+.++|||.|| |..++ +++|.++|+.||.|..|.|... ++|+|||+|.+.++|..|++.|||..|.|+
T Consensus 20 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 20 NNDCRIYVGNL--PPDIR--------TKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCSSEEEEESC--CTTCC--------HHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 46779999999 77777 7999999999999999999554 579999999999999999999999999999
Q ss_pred EEEEEEeCchh
Q 006398 628 MITATFMVPQT 638 (647)
Q Consensus 628 ~i~v~~~~~~~ 638 (647)
+|.|.|+.+..
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999987754
No 230
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2.7e-14 Score=121.17 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=70.8
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
..++++|||+|| |..++ +++|..+|+.||.|..|.|. +|+|||+|.+.++|..|+..|||..|+|++
T Consensus 28 ~~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 28 ELSNTRLFVRPF--PLDVQ--------ESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp CCSCSEEEECSS--CTTCC--------HHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEECC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 457789999999 77777 79999999999999999997 799999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 006398 629 ITATFMVPQT 638 (647)
Q Consensus 629 i~v~~~~~~~ 638 (647)
|.|.|+.+..
T Consensus 95 l~V~~a~~~~ 104 (108)
T 2jvo_A 95 LEVVYSKLPA 104 (108)
T ss_dssp CEEESCSCCC
T ss_pred EEEEEecCCC
Confidence 9999987653
No 231
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=118.26 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCC--ceecCeEEEEE
Q 006398 358 GGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ--LEIVGRAIKVS 434 (647)
Q Consensus 358 ~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g--~~~~g~~i~v~ 434 (647)
.+.++|||+|||+ .+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++ ..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 4578999999999 9999999999999999999999875 68999999999999999998875 56999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
|+.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9986543
No 232
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.8e-14 Score=118.44 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=72.9
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
..+.++|||+|| |..++ +++|.++|+.||.|..|.|.+ ++|+|||+|.+.++|..|+..|||..|.|++
T Consensus 12 ~~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 12 FTQRSRLFVGNL--PPDIT--------EEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCCTTEEEEESC--CTTCC--------HHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 346779999999 77777 799999999999999999975 5899999999999999999999999999999
Q ss_pred EEEEEeCchhhh
Q 006398 629 ITATFMVPQTYE 640 (647)
Q Consensus 629 i~v~~~~~~~~~ 640 (647)
|.|.|+.+..-.
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpj_A 81 LRVRFACHSASL 92 (99)
T ss_dssp CEEEESSCCSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999876543
No 233
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=124.98 Aligned_cols=83 Identities=19% Similarity=0.337 Sum_probs=73.0
Q ss_pred CCCCCeEEEecCCCCCCHHHHH----HHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceE
Q 006398 253 ERDQRTVFAYQICLKADERDVY----EFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i 327 (647)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+. |||..|.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 6899999999988753 57899999999999999999996 99999999999
Q ss_pred EEccCcchhhh
Q 006398 328 MVKPSEAEKNL 338 (647)
Q Consensus 328 ~v~~~~~~~~~ 338 (647)
.|.++......
T Consensus 103 ~V~~a~~~~~~ 113 (127)
T 2a3j_A 103 VITFSETPQSQ 113 (127)
T ss_dssp EEEECCCCCHH
T ss_pred EEEEccCcchh
Confidence 99998765443
No 234
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.52 E-value=8e-14 Score=121.71 Aligned_cols=86 Identities=26% Similarity=0.443 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|||+|||+.+++++|+++|..||.|..|.|+.+.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987654
No 235
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.8e-15 Score=127.20 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCe----eEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKV----RDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVK 330 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i----~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~ 330 (647)
...+|||+|||+.+|+++|+++|.+||.| ..|.|+.+. +|.++|||||+|.+.++|.+||++++..|.|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34799999999999999999999999975 689999984 7999999999999999999999989999999999998
Q ss_pred cCcchh
Q 006398 331 PSEAEK 336 (647)
Q Consensus 331 ~~~~~~ 336 (647)
.+....
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 776543
No 236
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=128.34 Aligned_cols=80 Identities=19% Similarity=0.396 Sum_probs=75.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4467899999999999999999999999999999999999999999999999999999999996 999999999999976
Q ss_pred C
Q 006398 332 S 332 (647)
Q Consensus 332 ~ 332 (647)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 237
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=122.59 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcE-EEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTV-ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v-~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....+|||+|||+.+++++|+++|..||.| ..|.|+.+.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4557899999999999999999999999999 889999888899999999999999999999997 99999999999999
Q ss_pred eecCC
Q 006398 436 VTDQS 440 (647)
Q Consensus 436 ~~~~~ 440 (647)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87653
No 238
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=3.4e-14 Score=122.64 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGT---VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
......+|||+|||+.+++++|+++|+.||. |..|.|+.+..|.++|||||+|.+.++|.+||+ |++..|+|+.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 3455789999999999999999999999998 889999988779999999999999999999999 999999999999
Q ss_pred EEEeecC
Q 006398 433 VSAVTDQ 439 (647)
Q Consensus 433 v~~~~~~ 439 (647)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998653
No 239
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=9e-14 Score=118.08 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC-----eE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG-----RA 430 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g-----~~ 430 (647)
......+|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 3455789999999999999999999999999999999875 799999999999999999999999999 99
Q ss_pred EEEEEeecCCC
Q 006398 431 IKVSAVTDQSG 441 (647)
Q Consensus 431 i~v~~~~~~~~ 441 (647)
|.|.++..+..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999988654
No 240
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=3.1e-15 Score=125.61 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=74.5
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|+++|.+||.|.. .++.+..+|.++|||||+|.+.++|.+||+|+|..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999999888 67777788999999999999999999999999999999999999876
Q ss_pred ch
Q 006398 334 AE 335 (647)
Q Consensus 334 ~~ 335 (647)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 241
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=119.97 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=70.3
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCC----
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG---- 626 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~g---- 626 (647)
...+|||.|| |..++ +++|.++|+.||.|..|.|+.+ |+|||+|.+.++|+.||+.|||..|.|
T Consensus 14 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 14 SENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCEEEEESC--CSSCC--------HHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 4569999999 77777 7999999999999999999776 999999999999999999999999999
Q ss_pred -eEEEEEEeCchh
Q 006398 627 -KMITATFMVPQT 638 (647)
Q Consensus 627 -r~i~v~~~~~~~ 638 (647)
++|.|.++.+..
T Consensus 82 ~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 82 TAYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEEESSCCS
T ss_pred ceEEEEEeCCCCC
Confidence 999999998743
No 242
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.52 E-value=3.9e-14 Score=115.81 Aligned_cols=80 Identities=34% Similarity=0.562 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999988 48889999999999999999999 9999999999999999876
Q ss_pred CC
Q 006398 439 QS 440 (647)
Q Consensus 439 ~~ 440 (647)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 243
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.52 E-value=2.1e-14 Score=126.49 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGT---VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
......+|||+|||+.+++++|+++|++||. |..|.|+.+..|.++|||||+|.+.++|.+||+ |++..|+|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3455789999999999999999999999999 889999988679999999999999999999999 999999999999
Q ss_pred EEEeecC
Q 006398 433 VSAVTDQ 439 (647)
Q Consensus 433 v~~~~~~ 439 (647)
|.++...
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9997543
No 244
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-13 Score=115.91 Aligned_cols=86 Identities=31% Similarity=0.473 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 355 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 355 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
....+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999988 579999999999999999999998 467999999999
Q ss_pred EEeecCCCC
Q 006398 434 SAVTDQSGL 442 (647)
Q Consensus 434 ~~~~~~~~~ 442 (647)
.++..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887653
No 245
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=113.51 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=65.1
Q ss_pred Ccce-EEeccCCCCCCCCchhhhhhHHHHHHHHhhhc-CCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 551 PSEC-LLLKNMFDPKNETYEEFDMDIKEDVEGECSKF-GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 551 ~~~~-l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~f-G~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
|+.+ |||.|| |+.++ .++|..+|.++|+.| |.|..|. .|+|||.|.++++|++|++.|||..|.|++
T Consensus 7 p~~T~lYV~NL--~~~~~----~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNL--PANKD----GKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESC--CTTSC----HHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCC--CCcCC----HHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 4445 999999 77665 233457799999999 5999982 399999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 006398 629 ITATFMVPQT 638 (647)
Q Consensus 629 i~v~~~~~~~ 638 (647)
|+|+||....
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999987653
No 246
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.52 E-value=1.3e-14 Score=120.36 Aligned_cols=81 Identities=21% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+..+|||+|||+.+++++|+++|.+||.|..+.++.+ .++.++|||||+|.+.++|.+||..|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44689999999999999999999999999987766665 68889999999999999999999999999999999999987
Q ss_pred ec
Q 006398 437 TD 438 (647)
Q Consensus 437 ~~ 438 (647)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 247
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.51 E-value=4.1e-14 Score=128.27 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
..++|||+|||+.+++++|+++|..|| .|..|.|+.+ .+|.++|||||+|.+.++|.+||..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999988 5899999999999999999999999999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 248
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.6e-14 Score=120.47 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceecCeEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~--g~~~~g~~i~v~~ 435 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|+ +..|.|+.|.|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 45789999999999999999999999999999999875 8999999999999999999887 4689999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 104 a~~k~~ 109 (119)
T 2ad9_A 104 SNHKEL 109 (119)
T ss_dssp CSSSSC
T ss_pred ccCCCC
Confidence 987654
No 249
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.51 E-value=6e-14 Score=120.78 Aligned_cols=81 Identities=20% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC--CCccEEEEeCChHHHHHHHHHHcCceeCCe
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD--SAGFVYLRFENTQSAFAAQRALHGRWFAGK 627 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~--~~G~afV~F~~~e~A~~A~~~lnG~~~~gr 627 (647)
.++++|||+|| |..++ +++|.++|+.||.|..|.|+.+ ++|+|||+|.+.++|..|+..|||..|+|+
T Consensus 6 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 6 EVNRILYIRNL--PYKIT--------AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp TCCSEEEEESC--CTTCC--------HHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 35679999999 77777 7999999999999999999654 579999999999999999999999999999
Q ss_pred EEEEEEeCchhhh
Q 006398 628 MITATFMVPQTYE 640 (647)
Q Consensus 628 ~i~v~~~~~~~~~ 640 (647)
.|.|.|+.+....
T Consensus 76 ~l~v~~a~~~~~~ 88 (115)
T 3lqv_A 76 YLVVLYYNANRAF 88 (115)
T ss_dssp BCEEEECCHHHHT
T ss_pred EEEEEEecCChhh
Confidence 9999999876544
No 250
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=115.48 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=71.4
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhc--CCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCe
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF--GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGK 627 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~f--G~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr 627 (647)
.+.++|||+|| |..++ +++|.++|+.| |.|..|.+ .+|+|||+|.+.++|..|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 13 SSVKILYVRNL--MLSTS--------EEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SCCCEEEEESC--CTTCC--------HHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred CCcCEEEEeCC--CCCCC--------HHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 46779999999 77777 79999999999 99999988 468999999999999999999999999999
Q ss_pred EEEEEEeCchhhhcc
Q 006398 628 MITATFMVPQTYEAK 642 (647)
Q Consensus 628 ~i~v~~~~~~~~~~~ 642 (647)
+|.|.|+.+..-...
T Consensus 80 ~l~v~~a~~~~~~~~ 94 (99)
T 2cpd_A 80 PIEVTLAKPVDKDSS 94 (99)
T ss_dssp EEEEECCCCCCCCCC
T ss_pred EEEEEECCCCCCCCC
Confidence 999999987654433
No 251
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=7.6e-14 Score=117.50 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=70.1
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.+.++|||.|| |..++ +++|.++|+.||.|..|.|+ +|+|||+|.+.++|..|+..|||..|.|++|
T Consensus 9 ~~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 9 AKVKVLFVRNL--ANTVT--------EEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCEEEECC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 46679999999 77777 79999999999999999996 5799999999999999999999999999999
Q ss_pred EEEEeCchhh
Q 006398 630 TATFMVPQTY 639 (647)
Q Consensus 630 ~v~~~~~~~~ 639 (647)
.|.|+.+..-
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9999977543
No 252
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.8e-14 Score=118.79 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
......+|||+|||+.+++++|+++|.+||.| .|.|+.+.++.++|||||+|.+.++|.+||+ +++..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34557899999999999999999999999955 8999888889999999999999999999995 799999999999999
Q ss_pred eecCC
Q 006398 436 VTDQS 440 (647)
Q Consensus 436 ~~~~~ 440 (647)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 253
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.5e-14 Score=119.88 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=68.8
Q ss_pred CeEEEecC----CCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecc----ccc----HHHHHH---hcCCc
Q 006398 257 RTVFAYQI----CLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYD----VMS----VPMAIA---LSGQP 321 (647)
Q Consensus 257 ~~v~v~~L----p~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~----~~~----a~~al~---~~g~~ 321 (647)
..|||+|| |+.+++.+|+++|+.||.|..|.++.|+.||.++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999997 555 677764 69999
Q ss_pred cCCceEEEccC
Q 006398 322 LLGQPVMVKPS 332 (647)
Q Consensus 322 ~~g~~i~v~~~ 332 (647)
|.|+.|.|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999754
No 254
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.1e-14 Score=120.36 Aligned_cols=83 Identities=34% Similarity=0.526 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999988754 3799999999999999999999999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
+..+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 255
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=9.3e-14 Score=118.48 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=69.5
Q ss_pred CcceEEeccCCCCCC-CCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 551 PSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~-~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
++++|||.|| |.. ++ +++|.++|+.||.|..|.| ++|+|||+|.+.++|..|+..|||..|+|++|
T Consensus 26 ~~~~l~V~nl--~~~~~t--------~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 26 INSRVFIGNL--NTALVK--------KSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp CSSEEEECSC--CCSSCC--------HHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCC--CcccCC--------HHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4579999999 776 66 7999999999999999999 67999999999999999999999999999999
Q ss_pred EEEEeCchhh
Q 006398 630 TATFMVPQTY 639 (647)
Q Consensus 630 ~v~~~~~~~~ 639 (647)
.|.|+.+..-
T Consensus 93 ~V~~a~~~~~ 102 (110)
T 1wf1_A 93 DINMAGEPKP 102 (110)
T ss_dssp CEEESCCCCS
T ss_pred EEEECCCCCC
Confidence 9999975443
No 256
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.9e-14 Score=119.85 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HhhccCCcEEEEEeccCC-C---CCcceEEEEEeCCHHHHHHHHHHcCCceecCe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLR---QVFEPFGTVELVQLPLDE-T---GHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~---~~f~~~G~v~~v~i~~~~-~---g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~ 429 (647)
....++|||+|||+.+++++|. ++|.+||.|..|.|+.+. + +.++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3557899999999999999999 999999999999998873 3 35569999999999999999999999999999
Q ss_pred EEEEEEeecCC
Q 006398 430 AIKVSAVTDQS 440 (647)
Q Consensus 430 ~i~v~~~~~~~ 440 (647)
.|.|.++..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998775
No 257
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=6.9e-14 Score=120.88 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=70.7
Q ss_pred eEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCcc-EEEEeCChHHHHHHHHHHcCceeCC--eEEE
Q 006398 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF-VYLRFENTQSAFAAQRALHGRWFAG--KMIT 630 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~-afV~F~~~e~A~~A~~~lnG~~~~g--r~i~ 630 (647)
.|||.|| +..++ +++|.++|+.||.|..|.|....+|+ |||+|.++++|..|+..|||..|.| ++|+
T Consensus 30 ~I~V~NL--~~~vt--------e~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 30 RIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp EEEEESC--CSCCC--------HHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred EEEECCC--CCCCC--------HHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 5679999 66666 79999999999999999997777888 9999999999999999999999988 9999
Q ss_pred EEEeCchhhhccC
Q 006398 631 ATFMVPQTYEAKF 643 (647)
Q Consensus 631 v~~~~~~~~~~~~ 643 (647)
|+|+.+...+-+.
T Consensus 100 I~~ak~~~l~v~~ 112 (130)
T 3zzy_A 100 IDFSKLTSLNVKY 112 (130)
T ss_dssp EEECSCSSCCCCC
T ss_pred EEecCCCceeEEe
Confidence 9999887654333
No 258
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.8e-14 Score=120.85 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
...++|||+|| |..++ +++|..+|+.||.|..|.+. .++|+|||+|.+.++|..|+..|||..|+|++|
T Consensus 25 ~~~~~l~V~nl--p~~~~--------~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 25 PRVTTAYIGNI--PHFAT--------EADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SSCCEEEEESC--CTTCC--------HHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCC--CcccC--------HHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 35679999999 77777 79999999999999999997 478999999999999999999999999999999
Q ss_pred EEEEeCc
Q 006398 630 TATFMVP 636 (647)
Q Consensus 630 ~v~~~~~ 636 (647)
.|.|+.+
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9999864
No 259
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=114.68 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.+.++|||+|| |..++ +++|..+|+.||.|..|.|+ +++|||+|.+.++|..|+..|||..|.|++|
T Consensus 7 ~~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNV--SAACT--------SQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSCCEEEESC--CTTCC--------HHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 46779999999 77777 79999999999999999996 4699999999999999999999999999999
Q ss_pred EEEEeCch
Q 006398 630 TATFMVPQ 637 (647)
Q Consensus 630 ~v~~~~~~ 637 (647)
.|.|+.+.
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999876
No 260
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-13 Score=122.53 Aligned_cols=87 Identities=31% Similarity=0.494 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 355 PYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 355 ~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
......++|||+|||..+++++|+++|+.||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999888 47888999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 006398 434 SAVTDQSG 441 (647)
Q Consensus 434 ~~~~~~~~ 441 (647)
.++.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987754
No 261
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=119.55 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe-E
Q 006398 358 GGARRLYVGNLHFNM------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-A 430 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~------~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~-~ 430 (647)
...++|||+|||+.+ ++++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+ .
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 346899999999999 789999999999999999998 46888999999999999999999999999999998 9
Q ss_pred EEEEEeecCC
Q 006398 431 IKVSAVTDQS 440 (647)
Q Consensus 431 i~v~~~~~~~ 440 (647)
|.|.++.+..
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999987643
No 262
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=114.07 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=68.3
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHH-cCceeCCeE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRAL-HGRWFAGKM 628 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~l-nG~~~~gr~ 628 (647)
.+.++|||+|| |..++ +++|.++|+.||.|..|.++. ++|+|||+|.+.++|..|+..| ||..|.|++
T Consensus 10 ~~~~~l~V~~l--~~~~t--------~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 10 KTITTLYVGGL--GDTIT--------ETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SSCCCEEEECC--TTTSC--------HHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCccEEEEcCC--CCCCC--------HHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 46679999999 77777 799999999999999999976 5899999999999999999999 999999999
Q ss_pred EEEEEe
Q 006398 629 ITATFM 634 (647)
Q Consensus 629 i~v~~~ 634 (647)
|.|.|+
T Consensus 79 l~v~~a 84 (85)
T 2ytc_A 79 LNVKWG 84 (85)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 999996
No 263
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=123.42 Aligned_cols=83 Identities=39% Similarity=0.648 Sum_probs=76.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 354 GPYSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 354 ~~~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
.......++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334556899999999999999999999999999999999988 6888999999999999999999999999999999999
Q ss_pred EEEe
Q 006398 433 VSAV 436 (647)
Q Consensus 433 v~~~ 436 (647)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9885
No 264
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.50 E-value=1.1e-13 Score=126.02 Aligned_cols=84 Identities=29% Similarity=0.413 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+||..|++..|.|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999988 47889999999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87553
No 265
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-14 Score=125.08 Aligned_cols=84 Identities=15% Similarity=0.314 Sum_probs=72.2
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|.++|.+||.|..|.+..+..+|.++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3466899999999999999999999999998544333333378999999999999999999997 999999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+....
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 86544
No 266
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.50 E-value=2.6e-13 Score=114.22 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
..+.++|||+|||+.+++++|+++|.+||.|..|.|++ +||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 34578999999999999999999999999999999874 59999999999999999999999999999999999
Q ss_pred ecCCCC
Q 006398 437 TDQSGL 442 (647)
Q Consensus 437 ~~~~~~ 442 (647)
......
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876653
No 267
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.8e-14 Score=118.28 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
...+|||+|||+.+++++|+++|++| .|..|.|+.+..|.++|||||+|.+.++|.+|| .+++..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 889999999877999999999999999999999 6899999999999988754
No 268
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=119.04 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCcceEEe--ccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCcee--
Q 006398 549 GVPSECLLL--KNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF-- 624 (647)
Q Consensus 549 ~~~~~~l~V--~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~-- 624 (647)
..|+++||| +|| +..++ +++|.++|++||.|..|.|+. ++|||||+|.+.++|+.|+..|||..|
T Consensus 22 ~~pt~~L~V~Ng~L--~~~~t--------e~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 22 SYATQSLVVANGGL--GNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SSCCSEEEEETCTG--GGTCC--------HHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCEEEEECCCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 457789999 669 66666 699999999999999998854 689999999999999999999999998
Q ss_pred ---CCeEEEEEEeCchh
Q 006398 625 ---AGKMITATFMVPQT 638 (647)
Q Consensus 625 ---~gr~i~v~~~~~~~ 638 (647)
.|++|.|.|+..-.
T Consensus 91 ~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp TTSCEEECEEEEESCCC
T ss_pred ccCCCcEEEEEecccCc
Confidence 79999999987543
No 269
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=116.58 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
....++|||+|||+.+|+++|+++|.+||.|. +.++. +.++|||||+|.+.++|..|+. |||..|.|+.|.|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999997 66664 4688999999999999999996 999999999999988
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+.+.
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7543
No 270
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=114.90 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec--CeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV--GRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~--g~~i~v~ 434 (647)
..+.++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..||+..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 355789999999999999999999999999999999864 789999999999999999999999999 9999999
Q ss_pred EeecCC
Q 006398 435 AVTDQS 440 (647)
Q Consensus 435 ~~~~~~ 440 (647)
|+..+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 988764
No 271
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=119.79 Aligned_cols=81 Identities=25% Similarity=0.514 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC--CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~--~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
....++|||+|||+.+++++|+++|+.|| |..|.|+.+. +|.++|||||+|.+.++|.+|+ .|+|..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35579999999999999999999999999 9999999884 7889999999999999999999 899999999999999
Q ss_pred EeecC
Q 006398 435 AVTDQ 439 (647)
Q Consensus 435 ~~~~~ 439 (647)
++...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 272
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=5.6e-14 Score=116.93 Aligned_cols=79 Identities=22% Similarity=0.422 Sum_probs=69.7
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHH----HHhhhcCCeEEEEEee--CCCccEEEEeCChHHHHHHHHHHcCce
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVE----GECSKFGKLKHIFVEK--DSAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~----~~F~~fG~V~~v~i~~--~~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
.++++|||+|| |..++ +++|. ++|+.||.|..|.+.. .++|+|||+|.+.++|..|+..|||..
T Consensus 6 ~~~~~l~V~nL--p~~~~--------~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 6 RPNHTIYINNL--NEKIK--------KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp CCCSEEEEESC--CTTSC--------HHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEeCC--CCCCC--------HHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 46789999999 77766 46666 9999999999999864 357999999999999999999999999
Q ss_pred eCCeEEEEEEeCchh
Q 006398 624 FAGKMITATFMVPQT 638 (647)
Q Consensus 624 ~~gr~i~v~~~~~~~ 638 (647)
|+|++|.|.|+.+..
T Consensus 76 ~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 76 FYDKPMRIQYAKTDS 90 (97)
T ss_dssp ETTEECEEEECSSCC
T ss_pred ECCcEEEEEEccCCC
Confidence 999999999987653
No 273
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=2.4e-14 Score=112.97 Aligned_cols=74 Identities=28% Similarity=0.515 Sum_probs=70.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 362 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
+|||+|||+.+++++|+++|++||.|..|.++.+. ++.++|||||+|.+.++|.+|++ |++..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999884 88899999999999999999998 8999999999999875
No 274
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=6e-14 Score=123.67 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE--EEeccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCc----eecC
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL--VQLPLDE-TGHCKGFGFVQFARLEDARNALNLNGQL----EIVG 428 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~--v~i~~~~-~g~~~g~afVef~~~~~A~~Al~~l~g~----~~~g 428 (647)
.....++|||+|||+.+++++|+++|.+||.|.. |.|+.+. +|.++|||||+|.+. +|.+|+..|+|. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999966 9999995 999999999999999 999999999999 9999
Q ss_pred eEEEEEEeecCCC
Q 006398 429 RAIKVSAVTDQSG 441 (647)
Q Consensus 429 ~~i~v~~~~~~~~ 441 (647)
+.|.|.++.....
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987643
No 275
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=6.5e-15 Score=130.13 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
..++|||+|||+.+|+++|+++|.+|| |..|.|+.++. |.++|||||+|.+.++|.+||++++..|.|+.|.|.++..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 457999999999999999999999999 67999999987 9999999999999999999999999999999999987654
Q ss_pred h
Q 006398 335 E 335 (647)
Q Consensus 335 ~ 335 (647)
.
T Consensus 123 ~ 123 (139)
T 2hgn_A 123 T 123 (139)
T ss_dssp S
T ss_pred C
Confidence 3
No 276
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=117.41 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..++ ..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEc
Confidence 45789999999999999999999999999999999998 578999999999999999999999875 9999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 277
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=111.98 Aligned_cols=76 Identities=29% Similarity=0.411 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHc-CCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN-GQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l-~g~~~~g~~i~v~~ 435 (647)
....++|||+|||..+++++|+++|.+||.|..|.++.+ +|||||+|.+.++|.+|+..| +|..|+|+.|.|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 455789999999999999999999999999999999874 899999999999999999988 99999999999999
Q ss_pred ee
Q 006398 436 VT 437 (647)
Q Consensus 436 ~~ 437 (647)
+.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 278
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.9e-13 Score=117.38 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee--------cC
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI--------VG 428 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~--------~g 428 (647)
....++|||+|||+.+++++|+++|..||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 3457899999999999999999999999999999999988889999999999999999999999999998 67
Q ss_pred eEEEEEEeecC
Q 006398 429 RAIKVSAVTDQ 439 (647)
Q Consensus 429 ~~i~v~~~~~~ 439 (647)
+.|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998754
No 279
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-13 Score=113.01 Aligned_cols=77 Identities=18% Similarity=0.337 Sum_probs=70.2
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
..++++|||+|| |..++ +++|.++|+.||.|..|.|. +++|||+|.+.++|..|+..|||..|.|++
T Consensus 7 ~~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 7 GKASTKLHVGNI--SPTCT--------NQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSSEEEEEESC--CSSCC--------HHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 346789999999 77777 79999999999999999996 469999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 006398 629 ITATFMVPQT 638 (647)
Q Consensus 629 i~v~~~~~~~ 638 (647)
|.|.|+.+..
T Consensus 74 l~V~~a~~~~ 83 (92)
T 2dgt_A 74 MHVQLSTSRL 83 (92)
T ss_dssp EEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999997654
No 280
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=114.96 Aligned_cols=78 Identities=13% Similarity=0.235 Sum_probs=68.3
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
..+++|||+|| |..++ +++|..+|+.||.|....+...++|+|||+|.+.++|+.|+..|||..|+|++|
T Consensus 17 ~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 17 PLAADVYVGNL--PRDAR--------VSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CCCCEEEEECC--CTTCC--------HHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCEEEEeCC--CCcCc--------HHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 35679999999 77777 799999999999997323345678999999999999999999999999999999
Q ss_pred EEEEeCch
Q 006398 630 TATFMVPQ 637 (647)
Q Consensus 630 ~v~~~~~~ 637 (647)
.|.|+.+.
T Consensus 87 ~V~~a~~~ 94 (97)
T 2e5j_A 87 RVALARQQ 94 (97)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99998764
No 281
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=5.9e-14 Score=130.19 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=77.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. +|.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 89999999999999999999997 9999999999999987
Q ss_pred cchhh
Q 006398 333 EAEKN 337 (647)
Q Consensus 333 ~~~~~ 337 (647)
.....
T Consensus 165 ~~~~~ 169 (177)
T 2f3j_A 165 ASQID 169 (177)
T ss_dssp SSGGG
T ss_pred cCCCC
Confidence 65433
No 282
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=118.26 Aligned_cols=80 Identities=16% Similarity=0.317 Sum_probs=71.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|.+||.| .++.+ .++.++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456899999999999999999999999977 55555 678999999999999999999997 999999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+.+..
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 86543
No 283
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=120.45 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
..++|||+|||+.+++++|+++|..||.|..|.|+.+ .++.++|||||+|.+.++|.+|| .|+|..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999988 46889999999999999999999 999999999999999987
Q ss_pred cCC
Q 006398 438 DQS 440 (647)
Q Consensus 438 ~~~ 440 (647)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 643
No 284
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=4.4e-14 Score=118.50 Aligned_cols=76 Identities=21% Similarity=0.451 Sum_probs=70.6
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEE
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITAT 632 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~ 632 (647)
++|||+|| |..++ +++|.++|+.||.|..|.|..+++|+|||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 1 ~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 70 (101)
T 2hvz_A 1 MKVYVGNL--GTGAG--------KGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVE 70 (101)
T ss_dssp CEEEEECC--CSSCS--------HHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEE
T ss_pred CEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEE
Confidence 37999999 77777 799999999999999999987789999999999999999999999999999999999
Q ss_pred EeCchh
Q 006398 633 FMVPQT 638 (647)
Q Consensus 633 ~~~~~~ 638 (647)
|+.+..
T Consensus 71 ~a~~~~ 76 (101)
T 2hvz_A 71 LSTGMP 76 (101)
T ss_dssp ESSSCC
T ss_pred EccCCC
Confidence 997754
No 285
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.7e-13 Score=112.67 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=72.9
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.+.++|||+|| .++ +++|.++|+.||.|..|.|. .++|+|||+|.+.++|..|+..|||..|.|++|
T Consensus 13 ~~~~~l~V~n~----~~t--------~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 13 RKGNTLYVYGE----DMT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCSEEEEECS----SCC--------HHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCEEEEcCC----CCC--------HHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 36679999997 233 69999999999999999994 578999999999999999999999999999999
Q ss_pred EEEEeCchhhhccCCC
Q 006398 630 TATFMVPQTYEAKFPD 645 (647)
Q Consensus 630 ~v~~~~~~~~~~~~~~ 645 (647)
.|.|+.+.......|.
T Consensus 80 ~v~~a~~~~~~~~~~~ 95 (97)
T 1x5p_A 80 KVNIARKQPMLDSGPS 95 (97)
T ss_dssp EEECCSSCCCCCSSCS
T ss_pred EEEECCCCCCCCCCCC
Confidence 9999988776655554
No 286
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-14 Score=119.70 Aligned_cols=82 Identities=34% Similarity=0.607 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3588999999999999999999999999999999888 588899999999999999999999999999999999999987
Q ss_pred cCC
Q 006398 438 DQS 440 (647)
Q Consensus 438 ~~~ 440 (647)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 755
No 287
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.7e-14 Score=118.07 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=73.6
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
..+.++|||+|||+.+|+++|+++|..| ..|.++.+..++.++|||||+|.+.++|..||. |++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456899999999999999999999977 478889999899999999999999999999997 999999999999998
Q ss_pred Ccchh
Q 006398 332 SEAEK 336 (647)
Q Consensus 332 ~~~~~ 336 (647)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 86543
No 288
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.48 E-value=9e-14 Score=147.49 Aligned_cols=85 Identities=15% Similarity=0.330 Sum_probs=79.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEccC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKPS 332 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~~ 332 (647)
.+.++|||+|||+.+|+++|..+|.+||.|..|.|+.+..+|.++|||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999996 9999999999999998
Q ss_pred cchhhh
Q 006398 333 EAEKNL 338 (647)
Q Consensus 333 ~~~~~~ 338 (647)
......
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 765443
No 289
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=114.79 Aligned_cols=81 Identities=28% Similarity=0.464 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
...+.++|||+|||+.+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 3456789999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 887653
No 290
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.8e-14 Score=114.95 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=69.3
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
...++|||+|||+.+|+++|+.+|.+||.|..| +.+..+|. ||||+|.+.++|.+||+|+|..|.|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 345799999999999999999999999999987 66666665 9999999999999999999999999999998775
Q ss_pred ch
Q 006398 334 AE 335 (647)
Q Consensus 334 ~~ 335 (647)
..
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 291
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.9e-14 Score=116.62 Aligned_cols=79 Identities=28% Similarity=0.499 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999988 58889999999999999999999999999999998887664
No 292
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.8e-14 Score=116.53 Aligned_cols=76 Identities=25% Similarity=0.362 Sum_probs=69.0
Q ss_pred CCcceEEeccCCCCC-CCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 550 VPSECLLLKNMFDPK-NETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~-~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
.++++|||+|| |. .++ +++|..+|+.||.|..|.|. +|+|||+|.+.++|..|+..|||..|.|++
T Consensus 8 ~~~~~l~V~nl--p~~~~t--------~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 8 PPKSRLFIGNL--PLKNVS--------KEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp -CCEEEEEESS--TTSCCC--------HHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CCCCEEEEeCC--CcccCC--------HHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 47789999999 76 777 79999999999999999994 799999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 006398 629 ITATFMVPQT 638 (647)
Q Consensus 629 i~v~~~~~~~ 638 (647)
|.|.|+.+..
T Consensus 75 l~V~~a~~~~ 84 (96)
T 2kvi_A 75 LILEVSSSNA 84 (96)
T ss_dssp BCEEEEECCC
T ss_pred EEEEEcCcCC
Confidence 9999986543
No 293
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=8.4e-14 Score=113.50 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=73.5
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~ 630 (647)
..++|||+|| |..++ +++|.++|+.| .|..|.|+ .++|+|||+|.+.++|..|+..|||..|+|++|.
T Consensus 4 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 71 (88)
T 1wg1_A 4 GSSGILVKNL--PQDSN--------CQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLI 71 (88)
T ss_dssp CCCCEEEESC--CSSCC--------HHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 4568999999 77777 79999999999 99999986 6789999999999999999999999999999999
Q ss_pred EEEeCchhhhccCC
Q 006398 631 ATFMVPQTYEAKFP 644 (647)
Q Consensus 631 v~~~~~~~~~~~~~ 644 (647)
|.|++...+.-..+
T Consensus 72 V~~a~~~~~~~~~n 85 (88)
T 1wg1_A 72 VQLQPTDALLCSGP 85 (88)
T ss_dssp EEECCCCCCCSCCC
T ss_pred EEEcCCCceEecCC
Confidence 99998877654444
No 294
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=112.31 Aligned_cols=77 Identities=30% Similarity=0.517 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.+.++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|++..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 457999999999999999999999999999999987 5799999999999999999999999999999999998
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 295
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=118.95 Aligned_cols=82 Identities=27% Similarity=0.537 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
..++|||+|||+.+++++|+++|.+||.|..|.|+.+ .++.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3589999999999999999999999999999999988 5788999999999999999999998 9999999999999998
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7764
No 296
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=117.46 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc-EEEEEec-cC-CCCCcceEEEEEeCCHHHHHHHHHHcC--CceecCeEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLP-LD-ETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIK 432 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~-~~-~~g~~~g~afVef~~~~~A~~Al~~l~--g~~~~g~~i~ 432 (647)
.+.++|||+|||+.+++++|.++|.+||. |..|.|+ .+ .+|.++|||||+|.+.++|.+|+..|+ +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 55 477899999999999999999999996 5999999999
Q ss_pred EEEeecCCC
Q 006398 433 VSAVTDQSG 441 (647)
Q Consensus 433 v~~~~~~~~ 441 (647)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 297
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=114.18 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=67.3
Q ss_pred cEEEEcCCCCCC------CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe-EEEE
Q 006398 361 RRLYVGNLHFNM------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR-AIKV 433 (647)
Q Consensus 361 ~~l~v~nLp~~~------~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~-~i~v 433 (647)
++|||+|||+.+ ++++|.++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+|+..|||..|+|+ .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999988 46888899999999999999999999999999999 8876
No 298
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.7e-13 Score=110.68 Aligned_cols=78 Identities=28% Similarity=0.416 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45679999999999999999999999999999999974 39999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
..+..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87654
No 299
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.7e-15 Score=128.62 Aligned_cols=84 Identities=25% Similarity=0.430 Sum_probs=78.2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeE--------EEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRD--------VRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~--------v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
.+.++|||+|||+.+++++|+++|.+||.|.. |.|+.++.+|.++|||||+|.+.++|..||. |||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35689999999999999999999999999999 9999999999999999999999999999997 99999999
Q ss_pred ceEEEccCcchhh
Q 006398 325 QPVMVKPSEAEKN 337 (647)
Q Consensus 325 ~~i~v~~~~~~~~ 337 (647)
+.|.|.++.....
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999998876544
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=4.6e-13 Score=115.33 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=68.2
Q ss_pred Ccce--EEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCcc-EEEEeCChHHHHHHHHHHcCceeCC-
Q 006398 551 PSEC--LLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGF-VYLRFENTQSAFAAQRALHGRWFAG- 626 (647)
Q Consensus 551 ~~~~--l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~-afV~F~~~e~A~~A~~~lnG~~~~g- 626 (647)
|+.+ |||.|| +..++ +++|.++|+.||.|..|.|... .|+ |||+|.++++|..|+..|||..|.|
T Consensus 22 ps~vl~l~V~NL--~~~vt--------~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 22 GNKVLLLSIQNP--LYPIT--------VDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp CCSEEEEEEESC--CSCCC--------HHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred CCcEEEEEEcCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 4444 578999 66666 7999999999999999998664 496 9999999999999999999999987
Q ss_pred -eEEEEEEeCchhhh
Q 006398 627 -KMITATFMVPQTYE 640 (647)
Q Consensus 627 -r~i~v~~~~~~~~~ 640 (647)
++|+|+|+.+....
T Consensus 91 ~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 91 CCTLKIEYARPTRLN 105 (124)
T ss_dssp BSEEEEECCSCSCCC
T ss_pred CeEEEEEEecCCcce
Confidence 69999999877543
No 301
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=109.96 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=65.7
Q ss_pred CCCe-EEEecCCCCCCHHH----HHHHHHhc-CCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceE
Q 006398 255 DQRT-VFAYQICLKADERD----VYEFFSRA-GKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPV 327 (647)
Q Consensus 255 ~~~~-v~v~~Lp~~~t~~~----l~~~f~~~-G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i 327 (647)
++.+ |||+|||+.+++++ |.++|.+| |.|.+| |+ |+|||+|.+.++|.+|+. |+|..+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4566 99999999999988 55899999 499998 34 999999999999999996 99999999999
Q ss_pred EEccCcchhhhc
Q 006398 328 MVKPSEAEKNLV 339 (647)
Q Consensus 328 ~v~~~~~~~~~~ 339 (647)
.|.++.......
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999987665543
No 302
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=1.7e-14 Score=127.47 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
....+|||+|||+.+++++|+++|++|| |..|.|+.+..+.++|||||+|.+.++|.+|| .+++..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 66999999877999999999999999999999 789999999999999987
Q ss_pred cCC
Q 006398 438 DQS 440 (647)
Q Consensus 438 ~~~ 440 (647)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 303
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=1e-13 Score=117.41 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFG-TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....+|||+|||+.+++++|+++|++|| .|..+.|+.. .++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999 8999988643 36899999999999999999999999999999999998
Q ss_pred ecC
Q 006398 437 TDQ 439 (647)
Q Consensus 437 ~~~ 439 (647)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 304
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=6.7e-14 Score=116.44 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLR----QVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
.++++|||+|||+.+++++|. ++|.+||.|..|.++. +|.++|||||+|.+.++|..|+..|+|..|+|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 557899999999999999999 9999999999999874 4567899999999999999999999999999999999
Q ss_pred EEeecCC
Q 006398 434 SAVTDQS 440 (647)
Q Consensus 434 ~~~~~~~ 440 (647)
.|+....
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9988764
No 305
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=3.5e-13 Score=116.44 Aligned_cols=91 Identities=23% Similarity=0.259 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceE-EEEEeCCHHHHHHHHHHcCCceecC--eEEEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF-GFVQFARLEDARNALNLNGQLEIVG--RAIKVSA 435 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~-afVef~~~~~A~~Al~~l~g~~~~g--~~i~v~~ 435 (647)
.-..|||+||++.+++++|+++|++||.|..|.|+.. .+|+ |||+|.+.++|..|+..|||..|+| +.|+|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3456789999999999999999999999999988764 3577 9999999999999999999999998 8999999
Q ss_pred eecCCCCCCCCCCCCCCC
Q 006398 436 VTDQSGLQDLGANTTGDF 453 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~ 453 (647)
++.............+++
T Consensus 103 ak~~~l~v~~n~~~srDy 120 (130)
T 3zzy_A 103 SKLTSLNVKYNNDKSRDY 120 (130)
T ss_dssp CSCSSCCCCCCSSSEEET
T ss_pred cCCCceeEEecCCCcccC
Confidence 988776555554444433
No 306
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.8e-14 Score=114.72 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=69.6
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCC-eEEEEEeeCCCccEEEEeCChHHHHHHHHHHcC-ceeCCe
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGK-LKHIFVEKDSAGFVYLRFENTQSAFAAQRALHG-RWFAGK 627 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~-V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG-~~~~gr 627 (647)
.+.++|||+|| |..++ +++|.++|+.||. |..+.+. ++|+|||+|.+.++|..|+..||| ..|+|+
T Consensus 6 ~~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNL--SPAVT--------ADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECC--CTTCC--------HHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 46679999999 77777 7999999999999 6666653 579999999999999999999999 999999
Q ss_pred EEEEEEeCchhhhc
Q 006398 628 MITATFMVPQTYEA 641 (647)
Q Consensus 628 ~i~v~~~~~~~~~~ 641 (647)
+|.|.|+.+..-..
T Consensus 74 ~l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 74 IMEVDYSVSKKLRS 87 (93)
T ss_dssp ECEEEECCCCCCCC
T ss_pred EEEEEEccCccccC
Confidence 99999998765433
No 307
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2e-13 Score=115.21 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC--CceecCeEEEE
Q 006398 357 SGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG--QLEIVGRAIKV 433 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~--g~~~~g~~i~v 433 (647)
..+.++|||+|||+. +++++|.++|++||.|..|.|++. +|||||+|.+.++|..|+..|+ +..|.|+.|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999998 999999999999999999999754 8999999999999999999775 56799999999
Q ss_pred EEeecCCC
Q 006398 434 SAVTDQSG 441 (647)
Q Consensus 434 ~~~~~~~~ 441 (647)
.|+..+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987654
No 308
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.7e-13 Score=117.89 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=73.9
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCe----EEEEEe-eCCCccEEEEeCChHHHHHHHHHHcCce
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKL----KHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V----~~v~i~-~~~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
..++++|||+|| |..++ +++|.++|+.||.| ..+.+. ..++|+|||+|.+.++|..|+..|||..
T Consensus 22 ~~~~~~l~V~nL--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 22 GEPNKVLYLKNL--SPRVT--------ERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp CSCCSEEEEECC--CTTCC--------HHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 346789999999 77777 79999999999998 555553 3468999999999999999999999999
Q ss_pred eCCeEEEEEEeCchhhhccCCC
Q 006398 624 FAGKMITATFMVPQTYEAKFPD 645 (647)
Q Consensus 624 ~~gr~i~v~~~~~~~~~~~~~~ 645 (647)
|+|++|.|.|+.+..-....|.
T Consensus 92 ~~g~~l~v~~a~~~~~~~~~~~ 113 (115)
T 2cpx_A 92 LYGKILVIEFGKNKKQRSSGPS 113 (115)
T ss_dssp CSSCBCEEEECCCCSCCCCCCC
T ss_pred eCCcEEEEEEccCCCCCCCCCC
Confidence 9999999999988765554443
No 309
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.5e-13 Score=115.56 Aligned_cols=79 Identities=25% Similarity=0.446 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||..+++++|+++|.+||.|..|.|+.+ +|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34689999999999999999999999999999999876 7899999999999999999999999999999999998
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8664
No 310
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.7e-13 Score=110.21 Aligned_cols=78 Identities=28% Similarity=0.442 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|+|..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 35578999999999999999999999999999999974 39999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 311
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.2e-14 Score=112.15 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
++|||+|||+.+++++|+++|++||.|..|.++.+ .+|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 46999999999999999999999999999999988 478899999999999999999999999 9999999999986
No 312
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.8e-13 Score=115.96 Aligned_cols=77 Identities=25% Similarity=0.459 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....++|||+|||+.+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4557999999999999999999999999999999887 689999999999999999999999999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
....
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7754
No 313
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=5.2e-13 Score=112.14 Aligned_cols=83 Identities=31% Similarity=0.435 Sum_probs=73.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
...+.++|||+|||+.+++++|+++|..|+ .|.++.+ .++.++|||||+|.+.++|.+||..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345679999999999999999999999884 4555555 578899999999999999999999999999999999999
Q ss_pred EeecCCC
Q 006398 435 AVTDQSG 441 (647)
Q Consensus 435 ~~~~~~~ 441 (647)
|+..+..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987664
No 314
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.45 E-value=2.4e-14 Score=117.38 Aligned_cols=80 Identities=35% Similarity=0.621 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
++|||+|||..+++++|.++|++||.|..|.|+.+ .+|.++|||||+|.+.+ |.+|+..|+|..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999988 47889999999999999 99999999999999999999998876
Q ss_pred CC
Q 006398 440 SG 441 (647)
Q Consensus 440 ~~ 441 (647)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 315
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.45 E-value=2.3e-13 Score=118.86 Aligned_cols=80 Identities=28% Similarity=0.506 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
.++|||+|||+.+++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|| .|+|..|+|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 589999999999999999999999999999999888 58889999999999999999999 7999999999999999876
Q ss_pred CC
Q 006398 439 QS 440 (647)
Q Consensus 439 ~~ 440 (647)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 316
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=3.7e-13 Score=111.70 Aligned_cols=76 Identities=26% Similarity=0.592 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
..+.++|||+|||+ .+++++|.++|++||.|..|.|. +|||||+|.+.++|.+|+..|+|..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999998 99999999999999999999984 68999999999999999999999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
+...
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 317
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=2e-13 Score=116.35 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=68.7
Q ss_pred CCCCCeEEEecCCCC-CCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 253 ERDQRTVFAYQICLK-ADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
....++|||+|||+. +|+++|+++|.+||.|..|.| .+|||||+|.+.++|..||. |++..|.|+.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 335589999999999 999999999999999999998 57999999999999999995 99999999999999
Q ss_pred cCcch
Q 006398 331 PSEAE 335 (647)
Q Consensus 331 ~~~~~ 335 (647)
++...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 88643
No 318
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=6.8e-14 Score=118.60 Aligned_cols=81 Identities=14% Similarity=0.259 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc---EEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGT---VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
....+|||+|||+.+++++|+++|..||. |..|.|+.+..|.++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45789999999999999999999999988 899999998679999999999999999999999 99999999999999
Q ss_pred EeecC
Q 006398 435 AVTDQ 439 (647)
Q Consensus 435 ~~~~~ 439 (647)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 97653
No 319
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.5e-13 Score=119.98 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE-EEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL-VQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
.....+|||+|||+.+++++|.++|..||.|.. +.+....+|.++|||||+|.+.++|.+||. |++..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999999977 444445789999999999999999999999 999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=114.40 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=69.3
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
..+.++|||+|| |..++ +++|.++|+.||.|..+.....++|+|||+|.+.++|..|+..|||..|+|++
T Consensus 13 ~~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 13 VRAARTLLAKNL--SFNIT--------EDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTGGGEEEEESC--CSSCC--------HHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 346789999999 77777 79999999999999888333346799999999999999999999999999999
Q ss_pred EEEEEeCch
Q 006398 629 ITATFMVPQ 637 (647)
Q Consensus 629 i~v~~~~~~ 637 (647)
|.|.|+.+.
T Consensus 83 l~v~~a~~~ 91 (96)
T 1fjc_A 83 VSLYYTGEK 91 (96)
T ss_dssp EEEEECSSS
T ss_pred EEEEEcCCC
Confidence 999998764
No 321
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.2e-13 Score=116.18 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
.++|||+|||+.+++++|+++|.+||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 57899999999999999999999999999999875 3789999999999999999999999999999999999875
Q ss_pred C
Q 006398 440 S 440 (647)
Q Consensus 440 ~ 440 (647)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 322
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.8e-13 Score=111.59 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=69.8
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEE-EEeeC-CCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHI-FVEKD-SAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v-~i~~~-~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
.+++|||+|| |..++ +++|..+|+.||.|..| .|+.+ ..|.|||+|.+.++|..|+..|||..|+|++
T Consensus 14 ~~~~l~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 14 RIRKLQIRNI--PPHLQ--------WEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp SCCCEEEEEE--CSSSC--------HHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCEEEEEcC--CCCCC--------HHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 5679999999 77777 79999999999999999 46554 4566999999999999999999999999999
Q ss_pred EEEEEeCchh
Q 006398 629 ITATFMVPQT 638 (647)
Q Consensus 629 i~v~~~~~~~ 638 (647)
|.|.|+.+.+
T Consensus 84 l~V~~a~~~~ 93 (96)
T 2e44_A 84 LKVAYIPDEM 93 (96)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCccc
Confidence 9999998874
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=8e-13 Score=113.79 Aligned_cols=79 Identities=20% Similarity=0.196 Sum_probs=69.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceE-EEEEeCCHHHHHHHHHHcCCceecC--eEEEEEEee
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGF-GFVQFARLEDARNALNLNGQLEIVG--RAIKVSAVT 437 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~-afVef~~~~~A~~Al~~l~g~~~~g--~~i~v~~~~ 437 (647)
..|||+||++.+++++|+++|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|+| +.|.|.|+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 44679999999999999999999999999998753 376 9999999999999999999999988 699999998
Q ss_pred cCCCCCC
Q 006398 438 DQSGLQD 444 (647)
Q Consensus 438 ~~~~~~~ 444 (647)
.......
T Consensus 101 ~~~l~v~ 107 (124)
T 2e5i_A 101 PTRLNVI 107 (124)
T ss_dssp CSCCCCS
T ss_pred CCcceee
Confidence 8765433
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=2.4e-13 Score=126.02 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+.++.++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999999998888899999999999999999999999999999999999997
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 7553
No 325
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=2e-13 Score=114.43 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
..++|||+|||..+++++|+++|+.||.|..|.|+. ++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+.+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 468999999999999999999999999999999884 489999999999999999999999999999999999865
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2.8e-13 Score=112.37 Aligned_cols=79 Identities=34% Similarity=0.558 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||+.+++++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 457899999999999999999999999987665 3467789999999999999999999999999999999999987
Q ss_pred cCC
Q 006398 438 DQS 440 (647)
Q Consensus 438 ~~~ 440 (647)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 327
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=117.49 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCC---CCcccEEEEEecccccHHHHHH-hcCCccCCceEEE
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNS---RRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMV 329 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~t---g~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v 329 (647)
...++|||+|||+.+|+++|+++|.+||.|. +.++.+..+ |.++|||||+|.+.++|.+||+ |+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3568999999999999999999999999999 888888877 7999999999999999999996 63 256666655
Q ss_pred cc
Q 006398 330 KP 331 (647)
Q Consensus 330 ~~ 331 (647)
..
T Consensus 83 ~~ 84 (114)
T 2dnl_A 83 VS 84 (114)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 328
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=113.11 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEE-EEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEcc
Q 006398 254 RDQRTVFAYQICLKADERDVYEFFSRAGKVRDV-RLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVKP 331 (647)
Q Consensus 254 ~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v-~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~~ 331 (647)
...++|||+|||+.+|+++|+.+|.+||.|..| .|+.++.+| .|||+|.+.++|..|+. |||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345899999999999999999999999999999 588776654 39999999999999997 999999999999998
Q ss_pred Ccch
Q 006398 332 SEAE 335 (647)
Q Consensus 332 ~~~~ 335 (647)
+.+.
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8654
No 329
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=119.31 Aligned_cols=81 Identities=23% Similarity=0.198 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcE----EEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTV----ELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v----~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
....+|||+|||+.+++++|+++|++||.| ..|.|+.+.+|.++|||||+|.+.++|.+||.. ++..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 346899999999999999999999999875 688888888899999999999999999999996 889999999999
Q ss_pred EEeecC
Q 006398 434 SAVTDQ 439 (647)
Q Consensus 434 ~~~~~~ 439 (647)
..+...
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987653
No 330
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=3.9e-13 Score=120.65 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=68.0
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee-CCCccEEEEeCChHHHHHHHHHHcCceeCC--eEE
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK-DSAGFVYLRFENTQSAFAAQRALHGRWFAG--KMI 629 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~-~~~G~afV~F~~~e~A~~A~~~lnG~~~~g--r~i 629 (647)
..|||.|| +..++ +++|.++|++||.|..|.|.. .++|+|||+|.+.++|..|+..|||..|.| ++|
T Consensus 47 l~l~VgNL--~~~vt--------ed~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 47 LRIIVENL--FYPVT--------LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp EEEEECSC--CSCCC--------HHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred EEEEEeCc--CCCCC--------HHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 35889999 66666 799999999999999999854 457899999999999999999999999965 999
Q ss_pred EEEEeCchhh
Q 006398 630 TATFMVPQTY 639 (647)
Q Consensus 630 ~v~~~~~~~~ 639 (647)
+|+|+.+...
T Consensus 117 ~V~~Ak~~~l 126 (164)
T 1sjr_A 117 RIDFSKLTSL 126 (164)
T ss_dssp EEEECSSSSC
T ss_pred EEEEecCCcc
Confidence 9999987653
No 331
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=2.3e-13 Score=117.76 Aligned_cols=81 Identities=30% Similarity=0.379 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEE--EEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVE--LVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~--~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.....+|||+|||+.+++++|+++|++| .|. .|.|+.+..|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3457889999999999999999999999 565 89999987799999999999999999999985 6689999999999
Q ss_pred EeecC
Q 006398 435 AVTDQ 439 (647)
Q Consensus 435 ~~~~~ 439 (647)
++...
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87653
No 332
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-12 Score=107.23 Aligned_cols=79 Identities=27% Similarity=0.409 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccC--CcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 356 YSGGARRLYVGNLHFNMTEDQLRQVFEPF--GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~e~~l~~~f~~~--G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
...+.++|||+|||+.+++++|+++|.+| |.|..|.++ +|||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999 999999875 569999999999999999999999999999999
Q ss_pred EEeecCCC
Q 006398 434 SAVTDQSG 441 (647)
Q Consensus 434 ~~~~~~~~ 441 (647)
.++.....
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=6.1e-14 Score=125.79 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEE--E---eeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCce
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVR--L---IMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP 326 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~--~---~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~ 326 (647)
..+.++|||+|||+.+|+++|..+|.+||.|..+. + +....+|.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44568999999999999999999999999987741 1 1112468899999999999999999997 9999999999
Q ss_pred EEEccCcch
Q 006398 327 VMVKPSEAE 335 (647)
Q Consensus 327 i~v~~~~~~ 335 (647)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999988543
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.41 E-value=8.2e-13 Score=118.56 Aligned_cols=85 Identities=22% Similarity=0.183 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecC--eEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVG--RAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g--~~i~v~~ 435 (647)
.....|||+||++.+++++|+++|++||.|..|.|+.. .++|||||+|.+.++|..|+..|+|..|+| +.|+|.|
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 33467899999999999999999999999999998754 247899999999999999999999999966 9999999
Q ss_pred eecCCCCCCC
Q 006398 436 VTDQSGLQDL 445 (647)
Q Consensus 436 ~~~~~~~~~~ 445 (647)
+.........
T Consensus 121 Ak~~~l~vk~ 130 (164)
T 1sjr_A 121 SKLTSLNVKY 130 (164)
T ss_dssp CSSSSCCCCC
T ss_pred ecCCcccccc
Confidence 9887654333
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=2.9e-13 Score=116.22 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=64.3
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE--
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM-- 628 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~-- 628 (647)
...+|||.|| |..++ +++|.++|+.||.|..|.|+.+ |||||+|.+.++|+.||+.|||..|.|+.
T Consensus 15 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 15 SENRVVVSGL--PPSGS--------WQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp --CCEEEEEC--CSSCC--------TTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 3468999999 77777 6999999999999999999776 99999999999999999999999999999
Q ss_pred ---EEEEEeCc
Q 006398 629 ---ITATFMVP 636 (647)
Q Consensus 629 ---i~v~~~~~ 636 (647)
|.|....+
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 66665544
No 336
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.41 E-value=2.5e-13 Score=131.52 Aligned_cols=81 Identities=23% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--cEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFG--TVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSA 435 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~ 435 (647)
..++|||+|||+.+++++|+++|.+|| .|..|.|+.+ .++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467899999999999999999999999 9999999998 5999999999999999999999999999999999999999
Q ss_pred eecC
Q 006398 436 VTDQ 439 (647)
Q Consensus 436 ~~~~ 439 (647)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=1.9e-13 Score=117.48 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=64.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCce-----EE
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQP-----VM 328 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~-----i~ 328 (647)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+||+ ||+..|.|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999854 899999999999999997 9999999998 66
Q ss_pred EccCc
Q 006398 329 VKPSE 333 (647)
Q Consensus 329 v~~~~ 333 (647)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65543
No 338
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.41 E-value=9.3e-14 Score=109.50 Aligned_cols=74 Identities=26% Similarity=0.534 Sum_probs=69.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 362 RLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 362 ~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
+|||+|||+.+++++|+++|++||.|..|.++.+ .++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999888 5788999999999999999999995 788999999999875
No 339
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5e-13 Score=110.14 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc-EEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCC-ceecCeEEEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGT-VELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQ-LEIVGRAIKVSA 435 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g-~~~~g~~i~v~~ 435 (647)
...++|||+|||+.+++++|+++|.+||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|+|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 45689999999999999999999999999 6655553 478999999999999999999999 999999999999
Q ss_pred eecCCC
Q 006398 436 VTDQSG 441 (647)
Q Consensus 436 ~~~~~~ 441 (647)
+..+..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987653
No 340
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.8e-12 Score=106.53 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 357 SGGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
..+.++|||+|| .+++++|+++|.+||.|..|.|.. ++|||||+|.+.++|.+||..|+|..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 345789999996 899999999999999999999853 4899999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
..+..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 77653
No 341
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=4.1e-13 Score=111.33 Aligned_cols=77 Identities=25% Similarity=0.578 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHF-NMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
.+.++|||+|||+ .+++++|.++|.+||.|..|.|. +|||||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4578999999998 99999999999999999999884 679999999999999999999999999999999999
Q ss_pred ecCCC
Q 006398 437 TDQSG 441 (647)
Q Consensus 437 ~~~~~ 441 (647)
.....
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 87654
No 342
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=8e-13 Score=111.50 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=70.2
Q ss_pred CCCcEEEE--cCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee-----cCeE
Q 006398 358 GGARRLYV--GNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI-----VGRA 430 (647)
Q Consensus 358 ~~~~~l~v--~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~-----~g~~ 430 (647)
.++.+||| +||++.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..| .|+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 45788999 779999999999999999999999988753 78999999999999999999999988 6889
Q ss_pred EEEEEeecCC
Q 006398 431 IKVSAVTDQS 440 (647)
Q Consensus 431 i~v~~~~~~~ 440 (647)
|.|.|+....
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999987543
No 343
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.40 E-value=3e-13 Score=113.63 Aligned_cols=81 Identities=27% Similarity=0.565 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
..++|||+|||+.+++++|.++|..||.|..|.|+.+.+|.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 3689999999999999999999999999999999998888899999999999999999999 89999999999999987
Q ss_pred CCC
Q 006398 439 QSG 441 (647)
Q Consensus 439 ~~~ 441 (647)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 653
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=8.9e-13 Score=107.40 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=63.4
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCcee--CC
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF--AG 626 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~--~g 626 (647)
.++..+|||+|| |..++ +++|.++|+.||.|..|.|+..++|||||+|.+.++|. .|+|..+ .|
T Consensus 8 ~~~~~~l~V~~L--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g 73 (89)
T 3d2w_A 8 HHHGSKVFVGRC--TEDMT--------AEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKG 73 (89)
T ss_dssp ---CCEEEEESC--CTTCC--------HHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETT
T ss_pred CCCCCEEEEeCC--CCCCC--------HHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCC
Confidence 346779999999 88887 79999999999999999998889999999999999998 3677664 59
Q ss_pred eEEEEEEeCchh
Q 006398 627 KMITATFMVPQT 638 (647)
Q Consensus 627 r~i~v~~~~~~~ 638 (647)
++|.|.++.+..
T Consensus 74 ~~v~v~~a~~k~ 85 (89)
T 3d2w_A 74 ISVHISNAEPKH 85 (89)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEEcCCCC
Confidence 999999988754
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=2.6e-13 Score=110.62 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=61.5
Q ss_pred CCCCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCc--cCCceEEEc
Q 006398 253 ERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQP--LLGQPVMVK 330 (647)
Q Consensus 253 ~~~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~--~~g~~i~v~ 330 (647)
..+..+|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEE
Confidence 345689999999999999999999999999999999863 79999999999999884 34444 568999998
Q ss_pred cCcch
Q 006398 331 PSEAE 335 (647)
Q Consensus 331 ~~~~~ 335 (647)
.+.+.
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 87644
No 346
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-12 Score=107.14 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
...++|||+|||+.+++++|+++|.+||.|..| +....++. ||||+|.+.++|.+||. |+|..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 346899999999999999999999999999988 33334543 99999999999999999 99999999999999887
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
.+..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6543
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.39 E-value=6.5e-13 Score=114.89 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=69.4
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEE
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMI 629 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i 629 (647)
.++++|||+|| . ++ +++|..+|+.||.|..|.|. .++|||||+|.+.++|..|+..|||..|+|++|
T Consensus 37 ~~~~~lfVgnl--~--~t--------e~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--D--MT--------PTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCEEEEECS--S--CC--------HHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEcCC--C--CC--------HHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 36779999997 3 33 69999999999999999995 578999999999999999999999999999999
Q ss_pred EEEEeCchhhhc
Q 006398 630 TATFMVPQTYEA 641 (647)
Q Consensus 630 ~v~~~~~~~~~~ 641 (647)
.|.|+.+.....
T Consensus 104 ~V~~a~~~~~~~ 115 (121)
T 2bz2_A 104 KVNIARKQPMLD 115 (121)
T ss_dssp EEEECCSSCC--
T ss_pred EEEEeCCCCCCC
Confidence 999998775543
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=1e-13 Score=116.22 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAV 436 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 436 (647)
....+|||+|||+.+++++|+++|.+||.|.. .++.+ .++.++|||||+|.+.++|.+||+ |+|..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45789999999999999999999999998877 44444 578889999999999999999999 9999999999999998
Q ss_pred ecCC
Q 006398 437 TDQS 440 (647)
Q Consensus 437 ~~~~ 440 (647)
..+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 349
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.38 E-value=1.4e-12 Score=106.20 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeec
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTD 438 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 438 (647)
..++|||+|||+.+++++|+++|.+| .|..|.|. .++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46889999999999999999999999 89888885 4689999999999999999999999999999999999876
Q ss_pred CC
Q 006398 439 QS 440 (647)
Q Consensus 439 ~~ 440 (647)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 350
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=120.93 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEE--------EeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELV--------QLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v--------~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~ 429 (647)
.+.++|||+|||+.+++++|..+|.+||.|..+ .+. .+|.++|||||+|.+.++|.+||..|||..|.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 457899999999999999999999999988664 222 3678899999999999999999999999999999
Q ss_pred EEEEEEeecCC
Q 006398 430 AIKVSAVTDQS 440 (647)
Q Consensus 430 ~i~v~~~~~~~ 440 (647)
.|.|.|+....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=2.5e-12 Score=107.87 Aligned_cols=81 Identities=17% Similarity=0.077 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHhhccCCcEEEEEeccCC--CCCcceEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 006398 358 GGARRLYVGNLHF-----NMTEDQLRQVFEPFGTVELVQLPLDE--TGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 430 (647)
Q Consensus 358 ~~~~~l~v~nLp~-----~~~e~~l~~~f~~~G~v~~v~i~~~~--~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~ 430 (647)
.++++|+|.||.. ..++++|+++|++||.|..|.|+.++ ++.++|+|||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999963 23789999999999999999999874 3678999999999999999999999999999999
Q ss_pred EEEEEeec
Q 006398 431 IKVSAVTD 438 (647)
Q Consensus 431 i~v~~~~~ 438 (647)
|.|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 352
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.1e-12 Score=110.90 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=69.8
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhccCCcEEEEEeccC-CCCCcceEEEEEeCC----HHH----HHHHHH--HcCCce
Q 006398 361 RRLYVGNL----HFNMTEDQLRQVFEPFGTVELVQLPLD-ETGHCKGFGFVQFAR----LED----ARNALN--LNGQLE 425 (647)
Q Consensus 361 ~~l~v~nL----p~~~~e~~l~~~f~~~G~v~~v~i~~~-~~g~~~g~afVef~~----~~~----A~~Al~--~l~g~~ 425 (647)
..|||+|| |+.+++.+|+++|+.||.|..|.++.+ .||.++|||||+|.+ ++. |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999 599999999999996 333 788888 789999
Q ss_pred ecCeEEEEEEeec
Q 006398 426 IVGRAIKVSAVTD 438 (647)
Q Consensus 426 ~~g~~i~v~~~~~ 438 (647)
|+|+.|.|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998544
No 353
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=7.1e-13 Score=107.96 Aligned_cols=83 Identities=16% Similarity=0.262 Sum_probs=69.0
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~ 630 (647)
++++|||+|| |..++ +++|.++|+.||.|..|.|+.+++|+|||+|.+.++|+.|+.. +..+.|++|.
T Consensus 4 ~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRC--TGDMT--------EDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESC--CSSSC--------HHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEE
T ss_pred CCcEEEEeCC--CCCCC--------HHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEE
Confidence 5679999999 87777 7999999999999999999888999999999999999754321 3445999999
Q ss_pred EEEeCchhhhccCCC
Q 006398 631 ATFMVPQTYEAKFPD 645 (647)
Q Consensus 631 v~~~~~~~~~~~~~~ 645 (647)
|.++.+..-...-|.
T Consensus 72 v~~a~~~~~~~~~~~ 86 (88)
T 1wf0_A 72 ISNAEPKHNSNSGPS 86 (88)
T ss_dssp EECCCCCCCCCSCSS
T ss_pred EEecCCCCCCCCCCC
Confidence 999988765544443
No 354
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=6.1e-14 Score=120.90 Aligned_cols=84 Identities=29% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEE--------EEeccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVEL--------VQLPLD-ETGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~--------v~i~~~-~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g 428 (647)
.+.++|||+|||+.+++++|+++|++||.|.. |.|+.+ .++.++|||||+|.+.++|.+|+..|+|..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34689999999999999999999999999988 888888 578899999999999999999999999999999
Q ss_pred eEEEEEEeecCCC
Q 006398 429 RAIKVSAVTDQSG 441 (647)
Q Consensus 429 ~~i~v~~~~~~~~ 441 (647)
+.|.|.++..+..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999887653
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=1.8e-12 Score=105.35 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=65.0
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhc----C-------CeEEEEEeeCCCccEEEEeCChHHHHHHHHHH
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF----G-------KLKHIFVEKDSAGFVYLRFENTQSAFAAQRAL 619 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~f----G-------~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~l 619 (647)
+.++|||+|| |..++ +++|.++|+.| | .|..+.+.. ++|+|||+|.+.++|..|+ .|
T Consensus 5 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l 72 (87)
T 2hzc_A 5 SARRLYVGNI--PFGIT--------EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AF 72 (87)
T ss_dssp GGGEEEEESC--CTTCC--------HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GG
T ss_pred CCCEEEEeCC--CCCCC--------HHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hc
Confidence 6779999999 77777 79999999999 8 899999865 4899999999999999999 99
Q ss_pred cCceeCCeEEEEEE
Q 006398 620 HGRWFAGKMITATF 633 (647)
Q Consensus 620 nG~~~~gr~i~v~~ 633 (647)
||..|.|++|.|..
T Consensus 73 ~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 73 DGIIFQGQSLKIRR 86 (87)
T ss_dssp TTCEETTEECEEEC
T ss_pred CCCEECCeEEEEeC
Confidence 99999999999973
No 356
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=2e-12 Score=105.01 Aligned_cols=72 Identities=35% Similarity=0.661 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC----C-------cEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPF----G-------TVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI 426 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~ 426 (647)
.+.++|||+|||+.+++++|+++|.+| | .|..+.+..+ +|||||+|.+.++|.+|+ .|+|..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 346899999999999999999999999 8 8999999865 899999999999999999 9999999
Q ss_pred cCeEEEEEE
Q 006398 427 VGRAIKVSA 435 (647)
Q Consensus 427 ~g~~i~v~~ 435 (647)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.34 E-value=1.7e-12 Score=122.10 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~ 333 (647)
..++|||+|||+.+|+++|.++|++||.|..|.|+.+.. |.++|||||+|.+.++|..||++.+..+.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 458999999999999999999999999999999998874 899999999999999999999966779999999998754
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=4.6e-13 Score=109.08 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=64.8
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEEccCcc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMVKPSEA 334 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v~~~~~ 334 (647)
..++|||+|||+.+|+++|+++|.+||.|..|.|+.+ ++|||||+|.+.++|++|+.. ...+.|..|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4589999999999999999999999999999999853 789999999999999865433 3456899999988765
Q ss_pred hh
Q 006398 335 EK 336 (647)
Q Consensus 335 ~~ 336 (647)
..
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 359
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-11 Score=106.31 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccC-CC---CCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLD-ET---GHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~---g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
...++|||+|||+.+++++|+++|++||.|. +.++.+ .+ |.++|||||+|.+.++|.+||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4468999999999999999999999999999 777776 34 7899999999999999999999884 477777777
Q ss_pred EEee
Q 006398 434 SAVT 437 (647)
Q Consensus 434 ~~~~ 437 (647)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=102.37 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=71.3
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMIT 630 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~ 630 (647)
....|.|.-...+...+.++.. +++|.++|++||.|..|.|+..++|||||+|.+.++|..|+..++| +.|++|+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~t---e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYS---KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCC---HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ccceEEEeeeccCccCcCCCCC---HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 3557777776443211111111 6999999999999999999888999999999999999999998666 6899999
Q ss_pred EEEeCchhhhccCCCC
Q 006398 631 ATFMVPQTYEAKFPDS 646 (647)
Q Consensus 631 v~~~~~~~~~~~~~~~ 646 (647)
|.|+.+..-..+.|.|
T Consensus 84 V~~a~~~~~~~~~~~~ 99 (100)
T 2d9o_A 84 ISWLEGQPQDASGPSS 99 (100)
T ss_dssp EECSSCCCCCCSSCCC
T ss_pred EEEccCCCCCCCCCCC
Confidence 9999888766666654
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=8.3e-12 Score=117.47 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQ 439 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 439 (647)
.++|||+|||+.+++++|.++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.++.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 578999999999999999999999999999999998888899999999999999999998776 5899999999997765
Q ss_pred C
Q 006398 440 S 440 (647)
Q Consensus 440 ~ 440 (647)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 4
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=4.1e-12 Score=122.11 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=68.9
Q ss_pred CCcceEEeccCCCCCCCCch-hhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCcee----
Q 006398 550 VPSECLLLKNMFDPKNETYE-EFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF---- 624 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~-~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~---- 624 (647)
...++|||+|| +..++.. -.....+++|..+|+.||.|..|.|+. ++|||||+|.+.++|+.|+..|||..|
T Consensus 132 ~~~rtLfVgnL--~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGI--DGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECT--TGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCC--ChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 46779999999 5443100 000123799999999999999999976 689999999999999999999999999
Q ss_pred --------CCeEEEEEEeCchh
Q 006398 625 --------AGKMITATFMVPQT 638 (647)
Q Consensus 625 --------~gr~i~v~~~~~~~ 638 (647)
.|++|.|.||....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=1.1e-11 Score=104.00 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=70.5
Q ss_pred CCCcEEEEcCC--CCCC--------CHHHHHHhhccCCcEEEEEeccCCC---CCcceEEEEEeCCHHHHHHHHHHcCCc
Q 006398 358 GGARRLYVGNL--HFNM--------TEDQLRQVFEPFGTVELVQLPLDET---GHCKGFGFVQFARLEDARNALNLNGQL 424 (647)
Q Consensus 358 ~~~~~l~v~nL--p~~~--------~e~~l~~~f~~~G~v~~v~i~~~~~---g~~~g~afVef~~~~~A~~Al~~l~g~ 424 (647)
.++++|+|.|+ |..+ .+++|+++|++||.|..|.|+.+.. +.++|+|||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999998 3333 2379999999999999999998842 367899999999999999999999999
Q ss_pred eecCeEEEEEEeec
Q 006398 425 EIVGRAIKVSAVTD 438 (647)
Q Consensus 425 ~~~g~~i~v~~~~~ 438 (647)
.|+|+.|.|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999765
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=8.6e-12 Score=107.80 Aligned_cols=77 Identities=25% Similarity=0.363 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEee
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVT 437 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 437 (647)
.+.++|||+|| .+++++|+++|++||.|..|.|.. ++|||||+|.+.++|.+|+..|+|..|+|+.|.|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45789999996 699999999999999999998863 58999999999999999999999999999999999988
Q ss_pred cCCC
Q 006398 438 DQSG 441 (647)
Q Consensus 438 ~~~~ 441 (647)
....
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 365
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=2.1e-11 Score=96.40 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=68.4
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeE
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKM 628 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~ 628 (647)
++|.-+|+|..+.+.++ +..+..+|+.+|.+.|+.||.|..++|.. +.+||+|.+.++|.+|+. |||..++|+.
T Consensus 4 GPpd~tv~V~~~~~~~~--~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPE--NNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTT--TCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccc--cccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 56777888888732222 22234567899999999999999999966 459999999999999999 9999999999
Q ss_pred EEEEEeCch
Q 006398 629 ITATFMVPQ 637 (647)
Q Consensus 629 i~v~~~~~~ 637 (647)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998764
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=5.7e-11 Score=101.30 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCC-----------HHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Q 006398 356 YSGGARRLYVGNLHFNMT-----------EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQL 424 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~~~-----------e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~ 424 (647)
...++++|+|.||..... +++|+++|++||.|..|.|. +. .++|||||+|.+.++|.+|+..|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 345689999999954432 58999999999999999663 32 36899999999999999999999999
Q ss_pred eecCeEEEEEEeecCCC
Q 006398 425 EIVGRAIKVSAVTDQSG 441 (647)
Q Consensus 425 ~~~g~~i~v~~~~~~~~ 441 (647)
.|+|+.|.|.++.+...
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999877653
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=3.3e-11 Score=103.05 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCC-----CCHHHHHHhhccCCcEEEEEeccCC-----CCCcceEEEEEeCCHHHHHHHHHHcCCceecC
Q 006398 359 GARRLYVGNLHFN-----MTEDQLRQVFEPFGTVELVQLPLDE-----TGHCKGFGFVQFARLEDARNALNLNGQLEIVG 428 (647)
Q Consensus 359 ~~~~l~v~nLp~~-----~~e~~l~~~f~~~G~v~~v~i~~~~-----~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g 428 (647)
++++|+|.|+-.. -.+++|++.|++||.|..|.|+.+. ++.++|+|||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4789999999432 2468999999999999999998873 34678999999999999999999999999999
Q ss_pred eEEEEEEeec
Q 006398 429 RAIKVSAVTD 438 (647)
Q Consensus 429 ~~i~v~~~~~ 438 (647)
+.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999764
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.21 E-value=1.5e-11 Score=118.08 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcee-
Q 006398 357 SGGARRLYVGNLHFNM---------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEI- 426 (647)
Q Consensus 357 ~~~~~~l~v~nLp~~~---------~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~- 426 (647)
....++|||+||+..+ ++++|.++|++||.|..|.|+.. +|||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457999999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred -----------cCeEEEEEEeecCC
Q 006398 427 -----------VGRAIKVSAVTDQS 440 (647)
Q Consensus 427 -----------~g~~i~v~~~~~~~ 440 (647)
.|+.|.|.||....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998754
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=7.3e-12 Score=104.98 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=63.3
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEE
Q 006398 365 VGNLHFNMTEDQLRQVF------------EPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIK 432 (647)
Q Consensus 365 v~nLp~~~~e~~l~~~f------------~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~ 432 (647)
+.+|++.+++++|++.| ++||.|..|.|+.+..+.++|||||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667776666555 999999999999887788999999999999999999999999999999999
Q ss_pred EEEe
Q 006398 433 VSAV 436 (647)
Q Consensus 433 v~~~ 436 (647)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.21 E-value=2.1e-11 Score=123.69 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=68.9
Q ss_pred CCCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCcee---C
Q 006398 549 GVPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWF---A 625 (647)
Q Consensus 549 ~~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~---~ 625 (647)
..|+++|||+|+.-+..++ +++|.++|++||.|..|.+.. ++|||||+|.+.++|+.|+..|||..+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~t--------e~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVS--------RNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCC--------HHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCC--------HHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 5688999999963355666 799999999999999998855 899999999999999999999999998 3
Q ss_pred Ce--EEEEEEeCchh
Q 006398 626 GK--MITATFMVPQT 638 (647)
Q Consensus 626 gr--~i~v~~~~~~~ 638 (647)
|+ +|.|.|+....
T Consensus 86 g~~~~ly~~~~~~~~ 100 (345)
T 3tht_A 86 GQKITLYLNFVEKVQ 100 (345)
T ss_dssp SCEEECEEEECSSEE
T ss_pred CCceEEEEEEeeccc
Confidence 44 78999986443
No 371
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.20 E-value=3.5e-11 Score=116.36 Aligned_cols=88 Identities=28% Similarity=0.614 Sum_probs=76.5
Q ss_pred CCcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeC---------CCccEEEEeCChHHHHHHHHHHc
Q 006398 550 VPSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKD---------SAGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~---------~~G~afV~F~~~e~A~~A~~~ln 620 (647)
..+.++.+.|++.+.++. .++.++|.++|++||.|..|.|..+ ++|++||+|.+.++|.+|+..||
T Consensus 122 ~~s~v~~l~n~v~~~e~~-----~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDID-----DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp CBCSEEEEESSCCGGGCC-----TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccchhhcCCCHHHHH-----HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 356689999997775543 3567999999999999999999532 46899999999999999999999
Q ss_pred CceeCCeEEEEEEeCchhhhcc
Q 006398 621 GRWFAGKMITATFMVPQTYEAK 642 (647)
Q Consensus 621 G~~~~gr~i~v~~~~~~~~~~~ 642 (647)
|+.|+|++|.|.|+++..|.+.
T Consensus 197 gr~~~gr~i~~~~~~~~~f~~~ 218 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQERFDNS 218 (222)
T ss_dssp TCBSSSSBCEEEECCHHHHHTT
T ss_pred CceECCeEEEEEEcCHHHhhhc
Confidence 9999999999999999999764
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=2e-10 Score=97.40 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec
Q 006398 358 GGARRLYVGNLHFNM----------TEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV 427 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~----------~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~ 427 (647)
.++++|+|.|+-... .+++|++.|++||.|..|.|+.+. .+|+|||+|.+.++|.+|+..|||..|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 568899999984322 236899999999999999997752 4899999999999999999999999999
Q ss_pred CeEEEEEEeec
Q 006398 428 GRAIKVSAVTD 438 (647)
Q Consensus 428 g~~i~v~~~~~ 438 (647)
|+.|.|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999765
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.6e-10 Score=90.54 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=67.5
Q ss_pred CCCCCcceEEeccCCCCCC-CCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeC
Q 006398 547 TIGVPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA 625 (647)
Q Consensus 547 ~~~~~~~~l~V~nl~~p~~-~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 625 (647)
..++|.-+|+|..+ +.. .....+..+|..+|.+.|+.||.|..++|..+ .+||+|.+.++|.+||. |||..++
T Consensus 10 ~~GPpD~Tv~V~~~--~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 10 FQGPLDATVVVNLQ--SPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCCTTCEEEEEES--SCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred ecCCCCCeEEEEec--CCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 34778889999988 321 11112335678999999999999999999664 39999999999999999 9999999
Q ss_pred CeEEEEEEeCc
Q 006398 626 GKMITATFMVP 636 (647)
Q Consensus 626 gr~i~v~~~~~ 636 (647)
|+.|+|.+-.+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999997543
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.1e-09 Score=88.79 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEEEeecCC
Q 006398 370 FNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVSAVTDQS 440 (647)
Q Consensus 370 ~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 440 (647)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..+++ +.|+.|.|.|+....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 4589999999999999999999883 5789999999999999999998665 679999999987664
No 375
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=1.5e-09 Score=110.13 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=66.4
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceec---Ce--
Q 006398 357 SGGARRLYVGN--LHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIV---GR-- 429 (647)
Q Consensus 357 ~~~~~~l~v~n--Lp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~---g~-- 429 (647)
..++.+|||+| |++.+++++|.++|++||.|..|.++. ++|||||+|.+.++|.+|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 46689999999 578999999999999999999998865 3799999999999999999999998873 44
Q ss_pred EEEEEEee
Q 006398 430 AIKVSAVT 437 (647)
Q Consensus 430 ~i~v~~~~ 437 (647)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 57778764
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.6e-09 Score=91.83 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=72.1
Q ss_pred CCcceEEeccCCCCCC-CCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCC-hHHHHHHHHHHc--CceeC
Q 006398 550 VPSECLLLKNMFDPKN-ETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFEN-TQSAFAAQRALH--GRWFA 625 (647)
Q Consensus 550 ~~~~~l~V~nl~~p~~-~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~-~e~A~~A~~~ln--G~~~~ 625 (647)
+++.+|+|.|| +.. ++ .++|.++|+.||.|..|.+.... ..|||.|.+ +.+|..|+..|| |..|.
T Consensus 16 ~~G~il~v~~l--~~~~~s--------redLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 16 KIGCLLKFSGD--LDDQTC--------REDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCEEEEEES--CCSSCC--------HHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cCCeEEEEecC--CCCcCC--------HHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 46779999999 555 55 79999999999999999996654 479999999 899999999995 88999
Q ss_pred CeEEEEEEeCchhhhccC
Q 006398 626 GKMITATFMVPQTYEAKF 643 (647)
Q Consensus 626 gr~i~v~~~~~~~~~~~~ 643 (647)
|..+++++.+.+....+|
T Consensus 85 g~~~~~evL~GeeE~~yw 102 (121)
T 1owx_A 85 NKEVTWEVLEGEVEKEAL 102 (121)
T ss_dssp SSSEEEEECCHHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHH
Confidence 999999999887776655
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=3.2e-08 Score=83.82 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCC-HHHHHHHHHHc--CCceecCeEE
Q 006398 356 YSGGARRLYVGNLHFN-MTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFAR-LEDARNALNLN--GQLEIVGRAI 431 (647)
Q Consensus 356 ~~~~~~~l~v~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~-~~~A~~Al~~l--~g~~~~g~~i 431 (647)
.......|+|+||+.. ++.++|+++|++||.|..|.+..+.. .|||.|.+ ...|..|+..| +++.|+|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 3456799999999999 99999999999999999999988733 59999999 89999999988 4789999888
Q ss_pred EEEEee
Q 006398 432 KVSAVT 437 (647)
Q Consensus 432 ~v~~~~ 437 (647)
.+....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887744
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=1.1e-07 Score=75.12 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=60.2
Q ss_pred CCcEEEEcCCCC----CC-CH---HHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeE
Q 006398 359 GARRLYVGNLHF----NM-TE---DQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRA 430 (647)
Q Consensus 359 ~~~~l~v~nLp~----~~-~e---~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~ 430 (647)
+--+|+|...+. .. .+ .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+|+. |+|..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 345677766552 22 32 679999999999999999886 38999999999999999 9999999999
Q ss_pred EEEEEeecC
Q 006398 431 IKVSAVTDQ 439 (647)
Q Consensus 431 i~v~~~~~~ 439 (647)
|+|.++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999997753
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.45 E-value=3.8e-07 Score=87.82 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=66.4
Q ss_pred CcEEEEcCCCC-----CCCHHHHHHhhccCCcEEEEEeccC-----CCCCcceEEEEEeCCHHHHHHHHHHcCCceecCe
Q 006398 360 ARRLYVGNLHF-----NMTEDQLRQVFEPFGTVELVQLPLD-----ETGHCKGFGFVQFARLEDARNALNLNGQLEIVGR 429 (647)
Q Consensus 360 ~~~l~v~nLp~-----~~~e~~l~~~f~~~G~v~~v~i~~~-----~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~ 429 (647)
...+.+.|+-. .-.+++|.+.|.+||.|..+.|+.+ .++.++|++||+|.+.++|.+|+..|+|..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 45566666532 2356899999999999999999855 2558899999999999999999999999999999
Q ss_pred EEEEEEeec
Q 006398 430 AIKVSAVTD 438 (647)
Q Consensus 430 ~i~v~~~~~ 438 (647)
.|.|.|...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999754
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=4.2e-07 Score=72.16 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=59.7
Q ss_pred CCCeEEEecCCCC-----C-C---HHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCc
Q 006398 255 DQRTVFAYQICLK-----A-D---ERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 325 (647)
Q Consensus 255 ~~~~v~v~~Lp~~-----~-t---~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~ 325 (647)
+.-||+|.-++.. . . -.+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+|+|..++|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4569999988743 2 2 14588899999999999999664 9999999999999999999999999
Q ss_pred eEEEccC
Q 006398 326 PVMVKPS 332 (647)
Q Consensus 326 ~i~v~~~ 332 (647)
.|+|+..
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999764
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.5e-06 Score=70.11 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=65.5
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhc-----CCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeC
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKF-----GKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFA 625 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~f-----G~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~ 625 (647)
..++|-|.|| |++++ ..-|..+..+| |.|+.|.+.. .-+-|+|+|.+...|.+|.-+|+|..|.
T Consensus 20 ~~rtiaL~~i--pDtvn--------darIr~lve~~~~i~~g~i~KI~L~p-DH~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 20 LETLICLFPL--SDKVS--------PSLICQFLQEEIHINEKDIRKILLVS-DFNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTSCEEEECC--CTTCC--------HHHHHHHHHHHTCCCTTTCSEEEEET-TTTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred CCcEEEEecC--CCCCC--------HHHHHHHHhhhhccCccceeEEEEec-CCCceEEEEccchhhHHHHhhcCCeeec
Confidence 4678999999 88888 48899999999 9999998854 4567999999999999999999999999
Q ss_pred CeEEEEEEeC
Q 006398 626 GKMITATFMV 635 (647)
Q Consensus 626 gr~i~v~~~~ 635 (647)
|++|+|.-+.
T Consensus 89 gr~Lr~gTv~ 98 (117)
T 2l9w_A 89 GKVIRSGTIN 98 (117)
T ss_dssp TEEEEEECHH
T ss_pred CeEEEecCHH
Confidence 9999997654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.32 E-value=2.1e-06 Score=69.29 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC-----CcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPF-----GTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~-----G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.++|.|.|||..++...|..+++++ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|+.|.|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 6889999999999999999999999 99999999888 4459999999999999999999999999999987
Q ss_pred Ee
Q 006398 435 AV 436 (647)
Q Consensus 435 ~~ 436 (647)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=5.4e-06 Score=67.01 Aligned_cols=81 Identities=23% Similarity=0.159 Sum_probs=65.3
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEE
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITA 631 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v 631 (647)
.++|+|.|| +.++-.+ .++.+.+..+|..|+.+..+...+ +-.-+.|.|.++++|.+|...|||..|.|+.|+|
T Consensus 5 pntLiitnl--~~~vF~~---~~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVA--NDDVFSE---SETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECC--CGGGGST---TTHHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecC--CHHHcCC---HHHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 458999999 3322111 223478999999999999887755 5567899999999999999999999999999999
Q ss_pred EEeCchh
Q 006398 632 TFMVPQT 638 (647)
Q Consensus 632 ~~~~~~~ 638 (647)
.|+.+..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9987543
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=4.2e-05 Score=61.45 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=73.6
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHh-----cCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCceEEE
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSR-----AGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQPVMV 329 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~-----~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~~i~v 329 (647)
...+|.|.|||+.+.++.|.-+|+. -|.|..+.... +-|+|+|.+.+.|++.|+.....|.+..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 3479999999999999999999976 25999988862 5799999999999999998889999999999
Q ss_pred ccCcchhhhcccccccCCCCCCCCCCCCCCCcEEEEcCCCCCCC
Q 006398 330 KPSEAEKNLVQSNSSIAGASGGGTGPYSGGARRLYVGNLHFNMT 373 (647)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~~ 373 (647)
.+..+ ....+|++.+|++.+.
T Consensus 79 ~P~~~-----------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP-----------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC-----------------------CCCCCCCCCSCCCCCC
T ss_pred EcCCC-----------------------CCcceEeeecCCCCCC
Confidence 76421 2357888889988764
No 385
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.49 E-value=6.3e-05 Score=63.40 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=63.6
Q ss_pred cceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEE-EEEe--------------e----CCCccEEEEeCChHHH
Q 006398 552 SECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKH-IFVE--------------K----DSAGFVYLRFENTQSA 612 (647)
Q Consensus 552 ~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~-v~i~--------------~----~~~G~afV~F~~~e~A 612 (647)
..-|.|.+. |... ..-|.++|++||.|+. +.+. + .+..|..|+|++..+|
T Consensus 7 e~~VtVFGF--p~~~---------~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A 75 (132)
T 3p3d_A 7 ELAILVFGY--PETM---------ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASA 75 (132)
T ss_dssp -CEEEEECC--CGGG---------HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHH
T ss_pred ceEEEEEec--CHHH---------HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHH
Confidence 346888888 5443 4889999999999987 2111 0 1357899999999999
Q ss_pred HHHHHHHcCceeCCeEEEEEEeCchhhhccCC
Q 006398 613 FAAQRALHGRWFAGKMITATFMVPQTYEAKFP 644 (647)
Q Consensus 613 ~~A~~~lnG~~~~gr~i~v~~~~~~~~~~~~~ 644 (647)
.+|+.. ||..|+|..|-|..+++.+.++.-.
T Consensus 76 ~rAL~~-NG~ii~G~mIGV~Py~~~~ve~l~~ 106 (132)
T 3p3d_A 76 VDALLE-NGAVFNGVLLGVIPYTKDAVERLQK 106 (132)
T ss_dssp HHHHTT-TTCEETTEECEEEECCHHHHHHHC-
T ss_pred HHHHHh-CCeEeCcEEEEEEECCHHHHHHHhc
Confidence 999995 9999999999999999888766543
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.0005 Score=57.23 Aligned_cols=72 Identities=14% Similarity=0.276 Sum_probs=60.1
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCC-eEE
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAG-KMI 629 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~g-r~i 629 (647)
....|.|.+. |... ...|..+|+.||.|+.... .....+..|+|.+..+|++||.. ||..|+| -.|
T Consensus 23 ~~~wVtVFGF--p~~~---------~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mI 89 (119)
T 1wwh_A 23 DDTWVTVFGF--PQAS---------ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMI 89 (119)
T ss_dssp GGGEEEEECC--CGGG---------HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEEC
T ss_pred CCCEEEEECC--CHHH---------HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEE
Confidence 4568999999 5443 4899999999999999887 34567999999999999999996 9999985 778
Q ss_pred EEEEeC
Q 006398 630 TATFMV 635 (647)
Q Consensus 630 ~v~~~~ 635 (647)
-|..+.
T Consensus 90 GV~p~~ 95 (119)
T 1wwh_A 90 GVKPCI 95 (119)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 888764
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.05 E-value=0.0011 Score=53.63 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=62.2
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEEE
Q 006398 360 ARRLYVGNLHFNM-T----EDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKVS 434 (647)
Q Consensus 360 ~~~l~v~nLp~~~-~----e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v~ 434 (647)
.++|+|+||+..+ . .+.+..+|..|+.+....+.+. -.-+.|.|.+.++|.+|-..|++..|+|..|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 5789999998765 2 2578899999998877766654 3358999999999999999999999999999999
Q ss_pred Eee
Q 006398 435 AVT 437 (647)
Q Consensus 435 ~~~ 437 (647)
|+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 987
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.85 E-value=0.0072 Score=47.99 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=60.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC--CC-CcceEEEEEeCCHHHHHHHHHHcCCceecC-----eEEE
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TG-HCKGFGFVQFARLEDARNALNLNGQLEIVG-----RAIK 432 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~--~g-~~~g~afVef~~~~~A~~Al~~l~g~~~~g-----~~i~ 432 (647)
.+|.|++||+.+|++++.+.+..+..+....++... .+ ..-.-|||.|.+.+++......++|..|-+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 579999999999999999999999888777665552 11 224579999999999999999999987743 2445
Q ss_pred EEEeec
Q 006398 433 VSAVTD 438 (647)
Q Consensus 433 v~~~~~ 438 (647)
|.+|.-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666543
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.79 E-value=0.0066 Score=48.10 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=45.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 006398 358 GGARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421 (647)
Q Consensus 358 ~~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l 421 (647)
.....++| +.|..+...||.++|++||.|. |.++.+ ..|||.|.+.+.|..|+.++
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET------TEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC------CeEEEEecCHHHHHHHHHhc
Confidence 33456666 9999999999999999999653 444433 26999999999999999866
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.71 E-value=0.0037 Score=51.98 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCC-ceEEEccCc
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLG-QPVMVKPSE 333 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g-~~i~v~~~~ 333 (647)
....|.|-+.|+.. ...|...|.+||.|...... .......|.|.+..+|++||..||..|.| -.|-|.++.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 34789999999985 67788999999999988872 23459999999999999999999999985 667777764
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.031 Score=44.88 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcc-----CCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcCCceecCeEEEE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEP-----FGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNGQLEIVGRAIKV 433 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~-----~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~g~~~~g~~i~v 433 (647)
...+|.|.|||+.+.++.|.-.|++ -|.|..+.... +-|+|.|.+...|+..|+.- .+.|++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQA-DHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCC-cceecCeEEEE
Confidence 3689999999999999999999997 26888887754 36999999999999998752 36788889998
Q ss_pred EEeecC
Q 006398 434 SAVTDQ 439 (647)
Q Consensus 434 ~~~~~~ 439 (647)
....+.
T Consensus 79 ~P~~~~ 84 (104)
T 2dhx_A 79 RPAPPR 84 (104)
T ss_dssp EECCCC
T ss_pred EcCCCC
Confidence 664443
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.66 E-value=0.0076 Score=47.75 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=42.9
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln 620 (647)
..-+++| ++ |.+.. ..||.++|+.||.|. |..+. -..|||-|.+++.|..|+..|+
T Consensus 15 r~HVf~l-~F--P~ewK--------t~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-EC--CTTCC--------HHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eC--Chhhh--------hHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 3447777 88 65554 599999999999554 33323 3679999999999999999875
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.63 E-value=0.0058 Score=48.50 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=54.9
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCC--CcccEEEEEecccccHHHHHH-hcCCccCC
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSR--RSKGVGYVEFYDVMSVPMAIA-LSGQPLLG 324 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg--~~~g~afV~f~~~~~a~~al~-~~g~~~~g 324 (647)
.+|.|.+||+++|++++.+.+..+..+.-...+..+.+. ..-.-|||.|.+.+++..... ++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999998877766666655432 234569999999999999997 99887643
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0061 Score=48.46 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=41.7
Q ss_pred ceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc
Q 006398 553 ECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 553 ~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln 620 (647)
-+|+| ++ |.+.. ..||.++|+.||.|. |..+. -..|||-|.+++.|..|+..|.
T Consensus 7 HV~~l-~F--P~ewK--------t~Di~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TF--PKEWK--------TSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-EC--CTTCC--------HHHHHHHTTTSEEEE-EEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eC--Chhhh--------hHHHHHHHhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 36777 88 65544 599999999999433 44333 3679999999999999999875
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.95 E-value=0.0084 Score=47.67 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 006398 361 RRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422 (647)
Q Consensus 361 ~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~ 422 (647)
..++| +.|..+...||.++|++||.| .|.++.+ ..|||.|.+.+.|..|+.++.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999954 4555543 269999999999999998764
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.81 E-value=0.038 Score=44.06 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=57.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCC--CCC-cceEEEEEeCCHHHHHHHHHHcCCceecC-----eE
Q 006398 359 GARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDE--TGH-CKGFGFVQFARLEDARNALNLNGQLEIVG-----RA 430 (647)
Q Consensus 359 ~~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~--~g~-~~g~afVef~~~~~A~~Al~~l~g~~~~g-----~~ 430 (647)
.+.+|.|+.||+.+|++++.+.+.+.-.+....++... .+. .-.-|||.|.+.++........+|..|-+ ..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 35789999999999999999888876555444333332 111 12458999999999999999999987743 35
Q ss_pred EEEEEee
Q 006398 431 IKVSAVT 437 (647)
Q Consensus 431 i~v~~~~ 437 (647)
..|+||.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5566654
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.53 E-value=0.023 Score=47.87 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=57.5
Q ss_pred CeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeee---------CCC----C-CcccEEEEEecccccHHHHHHhcCCcc
Q 006398 257 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMD---------RNS----R-RSKGVGYVEFYDVMSVPMAIALSGQPL 322 (647)
Q Consensus 257 ~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~---------~~t----g-~~~g~afV~f~~~~~a~~al~~~g~~~ 322 (647)
..|.|-|.|+.++ ..|...|++||.|..-.-... ... + .......|+|.+..+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 5788889977655 557789999998876211110 000 0 134578999999999999999999999
Q ss_pred CCceEEEccCcch
Q 006398 323 LGQPVMVKPSEAE 335 (647)
Q Consensus 323 ~g~~i~v~~~~~~ 335 (647)
.|.-|-|.++...
T Consensus 87 ~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 87 NGVLLGVIPYTKD 99 (132)
T ss_dssp TTEECEEEECCHH
T ss_pred CcEEEEEEECCHH
Confidence 9998888887643
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.09 E-value=0.022 Score=45.41 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=48.1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCC--CcccEEEEEecccccHHHHHH-hcCCccC
Q 006398 255 DQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSR--RSKGVGYVEFYDVMSVPMAIA-LSGQPLL 323 (647)
Q Consensus 255 ~~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg--~~~g~afV~f~~~~~a~~al~-~~g~~~~ 323 (647)
.+-+|.|..||+.+|++++.+.+..+-.+.-...+....+. ..-.-|||.|.+.++...... .+|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45689999999999999988877665443322222222211 122458999999999999987 8887664
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.67 E-value=0.044 Score=57.39 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHhcCCeeEEEEeeeCCCCCcccEEEEEecccccHHHHHHhcCCccCCc
Q 006398 256 QRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQPLLGQ 325 (647)
Q Consensus 256 ~~~v~v~~Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~~~g~~~~g~ 325 (647)
.+.|+|. .|..+++.+|.++|++||+|.++.+..+.. -||.|+|.+.+++..++...+....+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~~~~p~~~~ 116 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNGTHTPXXXX 116 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSSCCCCCCBC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhccCCCcccc
Confidence 3799997 799999999999999999999999885432 599999999999998886555555443
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.22 E-value=0.25 Score=51.67 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=41.3
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHH
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRA 618 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ 618 (647)
..+.|+|. . |.... +.+|.+.|+.||.|..+.+.....-+|.|+|.+.++|..++..
T Consensus 52 a~rsv~v~-~--~~~~~--------~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-C--PEKIS--------ENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-E--CCC-----------CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-c--CCCCC--------HHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 34578886 5 33333 5899999999999999999887777999999999999966543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.69 E-value=6.2 Score=41.96 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=41.7
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHc
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALH 620 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~ln 620 (647)
...+|+|+ + |.... ..+|.++|+.||.|.- .. -...+|||.|.+.+.|..++++++
T Consensus 439 R~~vl~v~-f--~~~~~--------~~~i~~~fs~fg~v~V-~w--iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-F--PKEWK--------TSDLYQLFSAFGNIQI-SW--IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-C--CTTCC--------HHHHHHHGGGGCCCEE-EE--CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-C--CCCCC--------HHHHHHHHHhcCCEEE-EE--EcCCeEEEEECCHHHHHHHHHHHH
Confidence 34577776 5 32322 4899999999996543 33 244689999999999999999985
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.63 E-value=9.5 Score=40.54 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLNG 422 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l~ 422 (647)
...++|+ +|..+...+|.++|+.||.| .|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4556665 88888999999999999965 4444433 369999999999999998774
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.92 E-value=66 Score=24.55 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=51.7
Q ss_pred CcceEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCc-------e
Q 006398 551 PSECLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGR-------W 623 (647)
Q Consensus 551 ~~~~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~-------~ 623 (647)
..+.|.|-|+ |..+. ..++.-...-.|.--.|... .|.|+|.|.+.++...|++.|-+. .
T Consensus 11 qnclikiini--pqgtl--------kaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 11 QNCLIKIINI--PQGTL--------KAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CSCEEEEECC--CTTCC--------HHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hCcEEEEEec--CCCce--------eeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 3456889999 76654 45555555566665566553 488999999999999999988322 2
Q ss_pred eCCeEEEEE-EeCchhhhccC
Q 006398 624 FAGKMITAT-FMVPQTYEAKF 643 (647)
Q Consensus 624 ~~gr~i~v~-~~~~~~~~~~~ 643 (647)
+.|...-|- -++++...+.|
T Consensus 78 irgqicdvistipedeeknyw 98 (129)
T 4eyt_A 78 IRGQICDVISTIPEDEEKNYW 98 (129)
T ss_dssp ETTEEEEEECCCCHHHHHHHH
T ss_pred EcceeeeeeecCCchhhhchh
Confidence 456654432 34444444433
No 404
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=43.03 E-value=79 Score=24.92 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=41.4
Q ss_pred eEEeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEE------EEeeCCC-ccEEEEeCChHHHHHHHH
Q 006398 554 CLLLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHI------FVEKDSA-GFVYLRFENTQSAFAAQR 617 (647)
Q Consensus 554 ~l~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v------~i~~~~~-G~afV~F~~~e~A~~A~~ 617 (647)
..+|.++ ..+|++.|.+...-....|.+||.-.-+ .+..+.. ..+.|+|.+.++|..+..
T Consensus 6 ~Y~I~~~----~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~~eG~~~~~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 6 GYWIAQV----DVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEEEEE----EESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEE----EeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCceEEecCCcCeEEEEECCCHHHHHHHHc
Confidence 3455566 3568899998889999999999743322 1222222 456889999999987653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=41.31 E-value=1.2e+02 Score=23.18 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=44.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCcEEEEEeccCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 006398 360 ARRLYVGNLHFNMTEDQLRQVFEPFGTVELVQLPLDETGHCKGFGFVQFARLEDARNALNLN 421 (647)
Q Consensus 360 ~~~l~v~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~g~~~g~afVef~~~~~A~~Al~~l 421 (647)
.+-+.|-|+|..+-..++.-.....|---.|..+. |.|.+.|.+.+....|++.|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHH
Confidence 46678899999998888777777777666776653 46999999999999999754
No 406
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=37.30 E-value=58 Score=27.40 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=54.1
Q ss_pred EeccCCCCCCCCchhhhhhHHHHHHHHhhhcCCeEEEEEee----CC----------------CccEEEEeCChHHHHHH
Q 006398 556 LLKNMFDPKNETYEEFDMDIKEDVEGECSKFGKLKHIFVEK----DS----------------AGFVYLRFENTQSAFAA 615 (647)
Q Consensus 556 ~V~nl~~p~~~~d~~~~~~~~~dl~~~F~~fG~V~~v~i~~----~~----------------~G~afV~F~~~e~A~~A 615 (647)
||-+.+-|.....-+.|..+...-..+|..||.+..+.+-. .+ .-|.+|+|.+.+....|
T Consensus 27 YVDGFv~pVP~ankeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~ 106 (141)
T 2okq_A 27 YVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAA 106 (141)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHH
T ss_pred eEEEEEEECcHHHHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHH
Confidence 44444445555567899999999999999999999887722 11 13679999999988888
Q ss_pred HHHHc----------CceeCCeEEEE
Q 006398 616 QRALH----------GRWFAGKMITA 631 (647)
Q Consensus 616 ~~~ln----------G~~~~gr~i~v 631 (647)
.+++- -..|.|++|+.
T Consensus 107 ~~kvm~DPRm~~~~~~mPFDgkRMI~ 132 (141)
T 2okq_A 107 NQKMMSDPRMKEFGESMPFDGKRMIY 132 (141)
T ss_dssp HHHHHTCHHHHHTTSSCSSCTTTCEE
T ss_pred HHHhhcCccccccCCCCCCCcceeEe
Confidence 85541 24577776543
No 407
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=33.41 E-value=1.4e+02 Score=23.18 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=37.9
Q ss_pred CCCchhhhhhHHHHHHHHhhhcCCeEEEE-----EeeC--CCccEEEEeCChHHHHHHHH
Q 006398 565 NETYEEFDMDIKEDVEGECSKFGKLKHIF-----VEKD--SAGFVYLRFENTQSAFAAQR 617 (647)
Q Consensus 565 ~~~d~~~~~~~~~dl~~~F~~fG~V~~v~-----i~~~--~~G~afV~F~~~e~A~~A~~ 617 (647)
..+|++.|.+...-....|.+||.-.-+. +... ....+.|+|.+.+.|..+..
T Consensus 12 ~v~d~e~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 12 TPKDAEKLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp EECCHHHHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 35678899888899999999997332221 2222 34567999999999988764
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=29.93 E-value=27 Score=25.91 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=36.2
Q ss_pred HHHHHHhhhcCC-----eEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCceeCCeEEEEEEe
Q 006398 577 EDVEGECSKFGK-----LKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRWFAGKMITATFM 634 (647)
Q Consensus 577 ~dl~~~F~~fG~-----V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~~~gr~i~v~~~ 634 (647)
.+|..++..-+. |-.|.| ...+.||+-... .|..++..|++..+.|+.|.|..+
T Consensus 16 ~~ivg~i~~~~gi~~~~IG~I~i---~d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 16 VDFVGTIAKIDGVSADDIGIITI---MDNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp HHHHHHHHTSTTCCGGGEEEEEE---CSSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred HHHHHHHHHccCCChhhccEEEE---eCCcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 566666655443 445666 335889987655 477899999999999999999875
No 409
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.12 E-value=1.4e+02 Score=25.04 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcC-CeEEEEEe-eCCCccEEEEeCChHHHHHHHHHHcCcee
Q 006398 576 KEDVEGECSKFG-KLKHIFVE-KDSAGFVYLRFENTQSAFAAQRALHGRWF 624 (647)
Q Consensus 576 ~~dl~~~F~~fG-~V~~v~i~-~~~~G~afV~F~~~e~A~~A~~~lnG~~~ 624 (647)
...|...+...| +|..+... ...+..+.|.+++.+.|.++++. .|+.+
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 578888888877 56565554 44556778899999999988887 67655
No 410
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.83 E-value=1.2e+02 Score=23.58 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHhhhcC-CeEEEEEeeCCCccEEEEeCChHHHHHHHHHHcCce
Q 006398 577 EDVEGECSKFG-KLKHIFVEKDSAGFVYLRFENTQSAFAAQRALHGRW 623 (647)
Q Consensus 577 ~dl~~~F~~fG-~V~~v~i~~~~~G~afV~F~~~e~A~~A~~~lnG~~ 623 (647)
..|...+...| .|..+.++..-.||.||++.-.++...++..+.|..
T Consensus 27 ~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 27 GLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred HHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCce
Confidence 44444433333 266777765568999999999999988888777654
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=24.20 E-value=1.7e+02 Score=21.35 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=38.9
Q ss_pred eEEEecC-CCCCCHHHHHHHHHhcC-----CeeEEEEeeeCCCCCcccEEEEEecccccHHHHHH-hcCCccCCceEEEc
Q 006398 258 TVFAYQI-CLKADERDVYEFFSRAG-----KVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIA-LSGQPLLGQPVMVK 330 (647)
Q Consensus 258 ~v~v~~L-p~~~t~~~l~~~f~~~G-----~i~~v~~~~~~~tg~~~g~afV~f~~~~~a~~al~-~~g~~~~g~~i~v~ 330 (647)
++||..- -..+...+|..++..-+ .|-.|.+. ..|.||+.... .|..++. |++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555433 23467788888886544 33455553 23889988764 5666775 99999999999886
Q ss_pred cC
Q 006398 331 PS 332 (647)
Q Consensus 331 ~~ 332 (647)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.13 E-value=1.3e+02 Score=26.39 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=39.7
Q ss_pred CeEEEecCCCC---------CCHHHHHHHH--HhcCCeeEEEEeeeCCCCCcccEEEEEecccc-cHHHHHH
Q 006398 257 RTVFAYQICLK---------ADERDVYEFF--SRAGKVRDVRLIMDRNSRRSKGVGYVEFYDVM-SVPMAIA 316 (647)
Q Consensus 257 ~~v~v~~Lp~~---------~t~~~l~~~f--~~~G~i~~v~~~~~~~tg~~~g~afV~f~~~~-~a~~al~ 316 (647)
..++|-|+|.. .....|.+.| ..|.++. |..+.+.. ...|+|.|.|..-- .-..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 46778888862 4567899977 8898866 55555543 47899999998654 3445554
No 413
>3bam_A R. bamhi, protein (restriction endonuclease bamhi); hydrolase, phosphodiesterase, complex (endonuclease/DNA), protein/DNA; HET: DNA; 1.80A {Bacillus amyloliquefaciens} SCOP: c.52.1.3 PDB: 1bhm_A* 1bam_A* 2bam_A* 1esg_A*
Probab=21.90 E-value=95 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.057 Sum_probs=33.8
Q ss_pred hcCCeEEEEEe-eCCCccEE-EEeCC--hHHHHHHHHHHcCceeCCeEEEEEE
Q 006398 585 KFGKLKHIFVE-KDSAGFVY-LRFEN--TQSAFAAQRALHGRWFAGKMITATF 633 (647)
Q Consensus 585 ~fG~V~~v~i~-~~~~G~af-V~F~~--~e~A~~A~~~lnG~~~~gr~i~v~~ 633 (647)
+=|.|..++.. .++.|..| |+|++ +.++.+|++.|.+-.+.|..+--.+
T Consensus 89 kPGPIDA~k~i~~~~~~~~~~~EwETGNIsSShRAiNKm~lg~~~g~i~ggil 141 (213)
T 3bam_A 89 KGGPIDVYKEFIENSELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAII 141 (213)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCSBHHHHHHHHHHHHHHHHTTSCSEEEE
T ss_pred CCCCceEEEEcccccCCceEEEEEecCccchHHHHHHHHHHHhhhceEeeeEE
Confidence 44666666655 56666654 67765 8999999999987777666644444
No 414
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=20.66 E-value=1.8e+02 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=22.3
Q ss_pred cCCeEEEEEeeC-CCccEEEE-eCChHHHHHHHHHHc
Q 006398 586 FGKLKHIFVEKD-SAGFVYLR-FENTQSAFAAQRALH 620 (647)
Q Consensus 586 fG~V~~v~i~~~-~~G~afV~-F~~~e~A~~A~~~ln 620 (647)
+=.|..|.|-.+ +...+||. |-+.++...+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 457888888554 44556887 666655555555554
Done!