BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006401
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRR 122
S ++Y+IL V + +KK Y++LAL HPDKN G+ EAFK +G A+ VLS+ +R
Sbjct: 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 123 KEYDM 127
K+YD
Sbjct: 66 KQYDQ 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 66 WYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEY 125
+Y +L V+P + N +KK Y+K+AL HPDKNP E FK + +A+ VLSD+ +R+ Y
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA--EQFKQISQAYEVLSDEKKRQIY 67
Query: 126 D 126
D
Sbjct: 68 D 68
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 66 WYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRK 123
+Y++L V+ + IKK Y+KLAL HPDKNP + +E+ FKLV EA+ VLSD +R
Sbjct: 11 YYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70
Query: 124 EYD 126
YD
Sbjct: 71 LYD 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVR 121
K +Y +L V+P + +KK Y+KLAL HPDKNP+ G E FK + +A+ VLSD +
Sbjct: 4 KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG--EKFKQISQAYEVLSDAKK 61
Query: 122 RKEYD 126
R+ YD
Sbjct: 62 RELYD 66
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 61 SKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKV 120
S+ K++Y I+ V+P + TIK Y++LA HPD + +E FK V EA+ VLSD+
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 61
Query: 121 RRKEYD 126
RR EYD
Sbjct: 62 RRAEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 60 ASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDK 119
A + K++Y IL V+P + TIK Y++LA HPD + + +E FK + EA+ VL D+
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83
Query: 120 VRRKEYD 126
RR EYD
Sbjct: 84 QRRAEYD 90
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 65 EWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRR 122
++Y++L V + IKK Y+KLAL HPDKNP + +E FK V EA+ VLSD +R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 123 KEYD 126
YD
Sbjct: 70 DIYD 73
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 66 WYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEY 125
+Y IL V + IKK + KLA+ HPDKN +E F+ + EA+ LSD RRKEY
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 126 DM 127
D
Sbjct: 69 DT 70
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 66 WYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRK 123
+Y+IL V + + IKK Y++ AL HPDKNP + +E+ FK V EA+ VLSDK +R+
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 124 EYD 126
YD
Sbjct: 64 IYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRR 122
K++YQ L + + IK+ Y++ AL HPDKN G+EE FK + EA+ VLSD +R
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 123 KEYD 126
+ +D
Sbjct: 62 EIFD 65
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 63/110 (57%), Gaps = 15/110 (13%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKN----PHSGSEEA---FKLVGEAFRVL 116
K+WY IL +P ++I+ +K++Y+KL L+ HPDK P EE F + +A+++L
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 117 SDKVRRKEYDMR-----LR-IKIQDEKVALDDNDDGFAGKETFWTACSRC 160
++ ++EYD++ LR + D +V L++ G +F+ +C RC
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPVDAQVYLEEM-SWNEGDHSFYLSC-RC 117
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVR 121
S ++YQIL V + IKK Y +LA HPD N ++E F + EA+ VLSD+V+
Sbjct: 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 122 RKEYD 126
RK+YD
Sbjct: 66 RKQYD 70
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 46/72 (63%), Gaps = 7/72 (9%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKN----PHSGSEEA---FKLVGEAFRVL 116
K+WY IL +P ++++ +K++Y+KL L+ HPDK P EE F + +A+++L
Sbjct: 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75
Query: 117 SDKVRRKEYDMR 128
++ +K+YD++
Sbjct: 76 GNEETKKKYDLQ 87
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEA-FKLVGEAFRVLSDKVRR 122
+++Y+IL V + I+K YK+LA+ HPD+N EA FK + EA+ VL+D +R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 123 KEYDM 127
YD
Sbjct: 63 AAYDQ 67
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVR 121
K + Y +L V P ++ +KK Y+K AL HPDK +G E FK + EAF +L+D +
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDK--PTGDTEKFKEISEAFEILNDPQK 63
Query: 122 RKEYD 126
R+ YD
Sbjct: 64 REIYD 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEA-FKLVGEAFRVLSDKVRR 122
+++Y+IL V + I+K YK+LA+ HPD+N EA FK + EA+ VL+D +R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 123 KEYDM 127
YD
Sbjct: 63 AAYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEA-FKLVGEAFRVLSDKVRR 122
+++Y+IL V + I+K YK+LA+ HPD+N EA FK + EA+ VL+D +R
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 123 KEYDM 127
YD
Sbjct: 63 AAYDQ 67
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 67 YQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYD 126
Y++L V + IKK YKKLA HPDKN G+E+ F + +A+ +LS++ +R YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 57 LRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVL 116
+R SK+ + +L V+P + + + K Y+KLA++LHPDK GSE+AFK V A L
Sbjct: 20 IRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 59 VASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNP-HSGSEEAFKLVGEAFRVLS 117
+++ + Y +L ++ + + IKK Y+KLAL HPDKNP + + + FK + A +L+
Sbjct: 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILT 71
Query: 118 DKVRRKEYD 126
D +R YD
Sbjct: 72 DATKRNIYD 80
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEA-FKLVGEAFRVLSDKVRR 122
+ +Y +L V + I++ +KKLAL LHPDKNP++ + F + A+ VL D+ R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 123 KEYD 126
K+YD
Sbjct: 62 KKYD 65
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEA-FKLVGEAFRVLSDKVRR 122
+ +Y +L V + I++ +KKLAL LHPDKNP++ + F + A+ VL D+ R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 123 KEYD 126
K+YD
Sbjct: 81 KKYD 84
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG-SEEAFKLVGEAFRVLSDKVR 121
++++Y +L + S + I ++K AL HPDK+P + + E F+ + +A +L+++
Sbjct: 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEES 78
Query: 122 RKEYDMRLRIKI 133
R YD R ++
Sbjct: 79 RARYDHWRRSQM 90
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 67 YQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEA---FKLVGEAFRVLSDKVRRK 123
Y +L V + IK Y + + HPD+N SGS EA F + +A+ VL R+
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRN--SGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 124 EYDMRL 129
+YD L
Sbjct: 78 KYDRGL 83
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 26 NLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQY 85
+ ++A +H + Q++ LE ++ S+ +++Y+IL V+ + I K Y
Sbjct: 351 DYETAQEHNENDQQIREGLEKAQRLLKQ-------SQKRDYYKILGVKRNAKKQEIIKAY 403
Query: 86 KKLALILHPDKNPH----SGSEEAFKLVGEAFRVLSDKVRRKEYD 126
+KLAL HPD + +E+ F + A VLSD RK++D
Sbjct: 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 26 NLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQY 85
+ ++A +H + Q++ LE A ++L+ S+ +++Y+IL V+ + I K Y
Sbjct: 351 DYETAQEHNENDQQIREGLE------KAQRLLK-QSQKRDYYKILGVKRNAKKQEIIKAY 403
Query: 86 KKLALILHPDKNPH----SGSEEAFKLVGEAFRVLSDKVRRKEYD 126
+KLAL HPD + +E+ F + A VLSD RK++D
Sbjct: 404 RKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 79 NTIKKQYKKLALILHPDKNPHSG--------SEEAFKLVGEAF 113
N ++K Y++ LILHPDK G +E+ F+L+ EA+
Sbjct: 55 NAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 67 YQILQV--EPFSHINTIKKQYKKLALILHPD--KNPHSG--SEEAFKLVGEAFRVLSDKV 120
Y +L+V E F + K Y+ LA HPD KN +EE F+++ A+ L D
Sbjct: 18 YDVLEVNREEFDK-QKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDE 76
Query: 121 RRKEYDMRL 129
+ YD L
Sbjct: 77 AKTNYDYYL 85
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 82 KKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQDEKVALD 141
KK ++L L HPDKNP E + E F+ L +++ R E ++ LD
Sbjct: 34 KKIIRRLYLKWHPDKNP-----ENHDIANEVFKHLQNEINRLE-----------KQAFLD 77
Query: 142 DNDDGFAGKETF 153
N D A + TF
Sbjct: 78 QNADR-ASRRTF 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,022,413
Number of Sequences: 62578
Number of extensions: 667486
Number of successful extensions: 1578
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1536
Number of HSP's gapped (non-prelim): 31
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)