Query 006401
Match_columns 646
No_of_seqs 409 out of 2686
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 22:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11926 DUF3444: Domain of un 100.0 5.7E-84 1.2E-88 645.5 22.5 212 408-621 4-217 (217)
2 COG0484 DnaJ DnaJ-class molecu 99.8 3.6E-20 7.7E-25 197.9 6.6 72 63-134 3-75 (371)
3 KOG0713 Molecular chaperone (D 99.8 6E-19 1.3E-23 184.5 8.0 73 62-134 14-87 (336)
4 PRK14288 chaperone protein Dna 99.7 6.3E-17 1.4E-21 175.4 7.5 68 64-131 3-71 (369)
5 PRK14296 chaperone protein Dna 99.7 6.2E-17 1.4E-21 175.6 7.3 69 63-131 3-71 (372)
6 KOG0624 dsRNA-activated protei 99.7 4.8E-16 1E-20 162.7 12.4 120 8-127 338-461 (504)
7 KOG0712 Molecular chaperone (D 99.7 1.1E-16 2.4E-21 169.2 7.0 72 63-136 3-74 (337)
8 PRK14279 chaperone protein Dna 99.6 3.7E-16 7.9E-21 170.7 7.3 68 63-130 8-76 (392)
9 PF00226 DnaJ: DnaJ domain; I 99.6 7.7E-16 1.7E-20 125.7 6.4 62 65-126 1-64 (64)
10 PRK14286 chaperone protein Dna 99.6 7.2E-16 1.6E-20 167.3 7.4 70 63-132 3-73 (372)
11 PRK14287 chaperone protein Dna 99.6 8.3E-16 1.8E-20 166.8 7.5 69 63-131 3-71 (371)
12 PRK14283 chaperone protein Dna 99.6 1E-15 2.2E-20 166.5 7.6 70 63-132 4-73 (378)
13 PRK14276 chaperone protein Dna 99.6 9.8E-16 2.1E-20 166.7 7.4 70 63-132 3-72 (380)
14 PRK14299 chaperone protein Dna 99.6 1.2E-15 2.7E-20 160.4 7.2 68 64-131 4-71 (291)
15 PTZ00037 DnaJ_C chaperone prot 99.6 1.1E-15 2.4E-20 168.0 6.9 67 63-132 27-93 (421)
16 PRK14298 chaperone protein Dna 99.6 1.1E-15 2.5E-20 166.0 6.9 69 63-131 4-72 (377)
17 PRK14291 chaperone protein Dna 99.6 1.4E-15 3E-20 165.6 7.5 70 63-132 2-71 (382)
18 KOG0716 Molecular chaperone (D 99.6 1.2E-15 2.6E-20 155.5 5.9 73 63-135 30-103 (279)
19 PRK14280 chaperone protein Dna 99.6 2E-15 4.2E-20 164.2 7.4 68 64-131 4-71 (376)
20 PRK14278 chaperone protein Dna 99.6 1.5E-15 3.1E-20 165.3 5.9 67 64-130 3-69 (378)
21 KOG0717 Molecular chaperone (D 99.6 1.8E-15 4E-20 162.9 6.4 74 63-136 7-82 (508)
22 PRK14282 chaperone protein Dna 99.6 2.2E-15 4.9E-20 163.3 7.0 69 63-131 3-73 (369)
23 PRK14285 chaperone protein Dna 99.6 2.7E-15 5.9E-20 162.5 7.1 69 64-132 3-72 (365)
24 PRK14277 chaperone protein Dna 99.6 3.1E-15 6.7E-20 163.2 7.4 70 63-132 4-74 (386)
25 KOG0691 Molecular chaperone (D 99.6 4.5E-15 9.8E-20 155.4 7.7 74 63-136 4-78 (296)
26 PRK14295 chaperone protein Dna 99.6 4.1E-15 8.8E-20 162.3 7.4 65 64-128 9-74 (389)
27 PRK14294 chaperone protein Dna 99.6 4.1E-15 8.9E-20 161.2 7.3 70 63-132 3-73 (366)
28 PRK14284 chaperone protein Dna 99.5 4.9E-15 1.1E-19 161.9 7.0 68 64-131 1-69 (391)
29 KOG0718 Molecular chaperone (D 99.5 8.3E-15 1.8E-19 157.9 8.5 73 62-134 7-83 (546)
30 PRK14301 chaperone protein Dna 99.5 5.1E-15 1.1E-19 160.8 6.7 69 63-131 3-72 (373)
31 PRK14297 chaperone protein Dna 99.5 4.5E-15 9.7E-20 161.6 6.1 69 64-132 4-73 (380)
32 KOG0550 Molecular chaperone (D 99.5 1.5E-14 3.2E-19 154.6 9.7 113 14-127 324-438 (486)
33 PRK10767 chaperone protein Dna 99.5 8.2E-15 1.8E-19 159.0 6.9 69 63-131 3-72 (371)
34 PRK14281 chaperone protein Dna 99.5 9.5E-15 2.1E-19 159.9 6.6 69 64-132 3-72 (397)
35 PRK14300 chaperone protein Dna 99.5 1.2E-14 2.6E-19 157.8 7.2 69 64-132 3-71 (372)
36 TIGR02349 DnaJ_bact chaperone 99.5 1.2E-14 2.6E-19 156.8 7.1 68 65-132 1-68 (354)
37 PRK10266 curved DNA-binding pr 99.5 1.5E-14 3.3E-19 153.2 7.7 66 64-129 4-69 (306)
38 KOG0715 Molecular chaperone (D 99.5 1.4E-14 3.1E-19 152.1 7.3 70 63-132 42-111 (288)
39 PRK14292 chaperone protein Dna 99.5 1.5E-14 3.3E-19 157.0 6.9 68 64-131 2-69 (371)
40 PTZ00341 Ring-infected erythro 99.5 1.9E-14 4.2E-19 166.6 7.7 72 62-133 571-642 (1136)
41 KOG0720 Molecular chaperone (D 99.5 3.7E-15 8.1E-20 160.7 1.6 129 62-191 233-366 (490)
42 PRK14293 chaperone protein Dna 99.5 2.1E-14 4.6E-19 156.0 7.3 68 64-131 3-70 (374)
43 PRK14290 chaperone protein Dna 99.5 2.2E-14 4.9E-19 155.4 6.6 68 64-131 3-72 (365)
44 PRK14289 chaperone protein Dna 99.5 4.4E-14 9.6E-19 154.1 7.5 69 63-131 4-73 (386)
45 smart00271 DnaJ DnaJ molecular 99.5 8.8E-14 1.9E-18 111.8 6.0 58 64-121 1-60 (60)
46 KOG0719 Molecular chaperone (D 99.4 1.2E-13 2.6E-18 138.1 5.9 70 62-131 12-84 (264)
47 cd06257 DnaJ DnaJ domain or J- 99.4 2.5E-13 5.3E-18 107.2 6.2 54 65-118 1-55 (55)
48 COG2214 CbpA DnaJ-class molecu 99.4 8.3E-13 1.8E-17 129.0 7.2 67 63-129 5-73 (237)
49 TIGR03835 termin_org_DnaJ term 99.3 1E-12 2.2E-17 149.7 7.5 69 64-132 2-70 (871)
50 KOG0721 Molecular chaperone (D 99.3 2E-12 4.4E-17 128.3 8.3 70 62-131 97-167 (230)
51 PRK05014 hscB co-chaperone Hsc 99.3 7.2E-12 1.6E-16 122.5 8.0 67 64-130 1-75 (171)
52 PHA03102 Small T antigen; Revi 99.3 3.2E-12 7E-17 122.5 5.1 64 64-130 5-70 (153)
53 PRK01356 hscB co-chaperone Hsc 99.2 1.1E-11 2.4E-16 120.7 7.2 67 64-130 2-74 (166)
54 PRK00294 hscB co-chaperone Hsc 99.2 3.8E-11 8.2E-16 117.6 8.1 69 62-130 2-78 (173)
55 KOG0722 Molecular chaperone (D 99.2 1.7E-11 3.8E-16 123.9 5.4 68 62-129 31-98 (329)
56 PRK03578 hscB co-chaperone Hsc 99.2 4.3E-11 9.4E-16 117.6 8.1 68 63-130 5-80 (176)
57 KOG0714 Molecular chaperone (D 99.0 1.3E-10 2.9E-15 119.0 4.1 68 63-130 2-71 (306)
58 PRK09430 djlA Dna-J like membr 99.0 2.2E-09 4.8E-14 112.0 12.3 55 64-118 200-262 (267)
59 PTZ00100 DnaJ chaperone protei 99.0 7.8E-10 1.7E-14 101.4 5.8 53 62-117 63-115 (116)
60 PHA02624 large T antigen; Prov 98.9 2.2E-09 4.9E-14 121.5 5.9 59 64-125 11-71 (647)
61 PRK01773 hscB co-chaperone Hsc 98.8 1.3E-08 2.9E-13 99.8 7.4 67 64-130 2-76 (173)
62 KOG1150 Predicted molecular ch 98.8 1.1E-08 2.5E-13 100.6 6.8 64 63-126 52-117 (250)
63 TIGR00714 hscB Fe-S protein as 98.7 4.3E-08 9.4E-13 94.8 7.0 55 76-130 3-63 (157)
64 COG5407 SEC63 Preprotein trans 98.6 5.7E-08 1.2E-12 105.2 7.4 69 62-130 96-170 (610)
65 COG5269 ZUO1 Ribosome-associat 98.5 1.2E-07 2.7E-12 97.1 5.9 65 62-126 41-111 (379)
66 KOG0568 Molecular chaperone (D 97.7 3.7E-05 8E-10 77.6 5.1 57 62-118 45-102 (342)
67 KOG1789 Endocytosis protein RM 97.7 5.2E-05 1.1E-09 89.1 5.7 53 63-117 1280-1336(2235)
68 KOG0723 Molecular chaperone (D 96.8 0.0021 4.7E-08 58.1 5.5 50 67-119 59-108 (112)
69 KOG3192 Mitochondrial J-type c 96.5 0.0038 8.2E-08 60.1 5.0 68 63-130 7-82 (168)
70 KOG0431 Auxilin-like protein a 96.3 0.0059 1.3E-07 68.7 6.0 69 45-116 372-448 (453)
71 COG1076 DjlA DnaJ-domain-conta 95.9 0.022 4.8E-07 56.1 7.3 54 63-116 112-173 (174)
72 COG1076 DjlA DnaJ-domain-conta 93.7 0.044 9.6E-07 54.0 2.6 66 65-130 2-75 (174)
73 PF11926 DUF3444: Domain of un 93.6 0.15 3.2E-06 52.3 6.4 79 433-519 124-213 (217)
74 TIGR02098 MJ0042_CXXC MJ0042 f 91.4 0.092 2E-06 38.7 1.1 33 155-187 3-38 (38)
75 PF05207 zf-CSL: CSL zinc fing 90.2 0.094 2E-06 42.3 0.2 36 149-185 13-51 (55)
76 PF07719 TPR_2: Tetratricopept 89.5 0.97 2.1E-05 31.2 5.0 33 11-43 1-33 (34)
77 PF13719 zinc_ribbon_5: zinc-r 86.9 0.34 7.5E-06 35.9 1.3 31 155-185 3-36 (37)
78 KOG2923 Uncharacterized conser 86.0 0.4 8.6E-06 39.8 1.3 37 149-186 17-56 (67)
79 PF00515 TPR_1: Tetratricopept 85.3 2.4 5.2E-05 29.5 5.0 33 11-43 1-33 (34)
80 PF13428 TPR_14: Tetratricopep 85.0 2.3 4.9E-05 31.9 5.0 39 13-51 3-41 (44)
81 PF13717 zinc_ribbon_4: zinc-r 83.4 0.6 1.3E-05 34.5 1.2 31 155-185 3-36 (36)
82 PF03656 Pam16: Pam16; InterP 82.0 2.8 6.1E-05 39.6 5.4 51 66-119 60-110 (127)
83 PF13414 TPR_11: TPR repeat; P 79.7 4.1 9E-05 32.6 5.1 43 10-52 2-44 (69)
84 PRK11788 tetratricopeptide rep 75.1 61 0.0013 34.6 13.9 33 12-44 215-247 (389)
85 COG3063 PilF Tfp pilus assembl 74.0 22 0.00048 37.2 9.5 72 7-96 30-102 (250)
86 KOG0724 Zuotin and related mol 70.9 4.1 8.9E-05 43.9 3.7 55 75-129 3-62 (335)
87 PF13181 TPR_8: Tetratricopept 68.8 10 0.00022 26.2 4.1 32 12-43 2-33 (34)
88 COG5216 Uncharacterized conser 68.2 2.1 4.7E-05 35.1 0.6 36 149-185 17-55 (67)
89 KOG2041 WD40 repeat protein [G 67.6 44 0.00096 40.0 11.0 55 64-129 1048-1102(1189)
90 KOG0553 TPR repeat-containing 67.0 13 0.00027 40.1 6.2 40 6-45 76-115 (304)
91 PF14559 TPR_19: Tetratricopep 66.6 12 0.00025 29.8 4.7 24 22-45 2-25 (68)
92 PRK06266 transcription initiat 66.3 5.5 0.00012 39.7 3.2 33 155-188 118-150 (178)
93 COG3097 Uncharacterized protei 66.3 7.9 0.00017 34.7 3.8 37 425-463 26-62 (106)
94 TIGR01206 lysW lysine biosynth 65.5 3.1 6.7E-05 33.6 1.0 37 156-192 4-40 (54)
95 PF03704 BTAD: Bacterial trans 64.9 18 0.00038 33.6 6.2 40 14-53 65-104 (146)
96 PF13174 TPR_6: Tetratricopept 64.7 13 0.00028 25.1 4.0 30 14-43 3-32 (33)
97 PF13432 TPR_16: Tetratricopep 62.4 16 0.00034 29.0 4.7 40 16-55 2-41 (65)
98 PF14853 Fis1_TPR_C: Fis1 C-te 61.3 26 0.00057 28.1 5.6 41 16-56 6-46 (53)
99 PF13446 RPT: A repeated domai 61.1 17 0.00037 29.5 4.7 26 65-90 6-31 (62)
100 PRK00398 rpoP DNA-directed RNA 59.9 3.7 8E-05 31.6 0.6 32 155-188 4-35 (46)
101 PRK00464 nrdR transcriptional 57.4 4.7 0.0001 39.3 0.9 35 156-190 2-44 (154)
102 KOG4234 TPR repeat-containing 56.9 83 0.0018 32.6 9.6 41 6-46 90-130 (271)
103 smart00028 TPR Tetratricopepti 56.8 19 0.00042 22.3 3.6 30 14-43 4-33 (34)
104 KOG0624 dsRNA-activated protei 55.8 69 0.0015 35.6 9.3 107 6-114 33-157 (504)
105 KOG3824 Huntingtin interacting 55.3 40 0.00087 36.8 7.4 74 2-78 107-185 (472)
106 PLN03088 SGT1, suppressor of 54.5 1.5E+02 0.0032 32.4 12.1 37 12-48 3-39 (356)
107 smart00531 TFIIE Transcription 53.9 10 0.00022 36.4 2.6 37 154-190 99-139 (147)
108 PRK10866 outer membrane biogen 53.7 1.1E+02 0.0023 31.8 10.2 31 16-46 74-104 (243)
109 PF13432 TPR_16: Tetratricopep 52.6 32 0.0007 27.1 5.0 35 10-44 30-64 (65)
110 KOG0543 FKBP-type peptidyl-pro 50.2 27 0.00058 39.0 5.3 74 15-92 261-338 (397)
111 PF13414 TPR_11: TPR repeat; P 50.0 27 0.00058 27.8 4.1 33 10-42 36-69 (69)
112 PF10475 DUF2450: Protein of u 49.0 68 0.0015 34.1 8.1 86 12-119 128-213 (291)
113 PF13371 TPR_9: Tetratricopept 48.9 33 0.00072 27.5 4.6 27 19-45 3-29 (73)
114 CHL00174 accD acetyl-CoA carbo 46.7 16 0.00035 39.3 2.9 36 149-185 33-68 (296)
115 PF14205 Cys_rich_KTR: Cystein 45.6 9.6 0.00021 30.9 0.8 34 152-185 2-39 (55)
116 PF14559 TPR_19: Tetratricopep 44.9 42 0.00092 26.5 4.6 41 13-53 27-67 (68)
117 TIGR00990 3a0801s09 mitochondr 44.2 2E+02 0.0044 33.5 11.7 39 6-44 122-160 (615)
118 TIGR00515 accD acetyl-CoA carb 43.7 15 0.00033 39.3 2.2 35 150-185 22-56 (285)
119 PF13176 TPR_7: Tetratricopept 43.4 48 0.001 23.7 4.2 29 14-42 2-30 (36)
120 smart00834 CxxC_CXXC_SSSS Puta 43.2 7.1 0.00015 28.7 -0.3 31 152-182 3-34 (41)
121 TIGR00373 conserved hypothetic 43.0 15 0.00033 35.8 1.9 33 155-188 110-142 (158)
122 KOG0547 Translocase of outer m 42.9 64 0.0014 37.2 6.9 51 5-55 109-159 (606)
123 KOG4234 TPR repeat-containing 42.7 57 0.0012 33.8 5.9 79 6-88 129-211 (271)
124 TIGR03504 FimV_Cterm FimV C-te 42.0 40 0.00087 26.0 3.7 26 15-40 3-28 (44)
125 COG1996 RPC10 DNA-directed RNA 41.2 18 0.0004 28.7 1.7 37 153-191 5-41 (49)
126 PRK05654 acetyl-CoA carboxylas 39.8 20 0.00043 38.5 2.3 35 150-185 23-57 (292)
127 PF07219 HemY_N: HemY protein 39.4 96 0.0021 28.0 6.4 46 7-53 55-100 (108)
128 PF13512 TPR_18: Tetratricopep 38.8 1.3E+02 0.0027 29.2 7.4 31 14-44 13-43 (142)
129 PF13374 TPR_10: Tetratricopep 37.9 79 0.0017 22.1 4.7 34 11-44 2-35 (42)
130 PF11833 DUF3353: Protein of u 37.3 62 0.0013 32.8 5.3 38 73-117 1-38 (194)
131 PF08271 TF_Zn_Ribbon: TFIIB z 35.3 11 0.00024 28.5 -0.3 30 156-186 2-31 (43)
132 COG0777 AccD Acetyl-CoA carbox 35.3 20 0.00042 38.2 1.4 35 150-185 24-58 (294)
133 PLN03088 SGT1, suppressor of 34.6 91 0.002 34.1 6.5 78 11-88 36-117 (356)
134 PF13371 TPR_9: Tetratricopept 33.8 76 0.0017 25.4 4.5 42 10-51 28-69 (73)
135 cd04708 BAH_plantDCM_II BAH, o 33.4 78 0.0017 32.4 5.3 51 412-469 12-71 (202)
136 PRK15174 Vi polysaccharide exp 33.0 2E+02 0.0044 34.1 9.6 106 15-122 288-410 (656)
137 PF14863 Alkyl_sulf_dimr: Alky 32.7 1.3E+02 0.0028 28.9 6.4 44 11-54 70-113 (141)
138 KOG0543 FKBP-type peptidyl-pro 32.2 1.2E+02 0.0026 34.0 6.9 45 12-56 292-336 (397)
139 PF14369 zf-RING_3: zinc-finge 32.2 18 0.00038 26.7 0.3 32 152-186 2-33 (35)
140 COG5552 Uncharacterized conser 32.0 1.5E+02 0.0032 25.7 5.8 48 64-111 3-50 (88)
141 smart00439 BAH Bromo adjacent 31.2 1.2E+02 0.0025 27.0 5.6 40 432-471 2-45 (120)
142 PF14687 DUF4460: Domain of un 31.1 86 0.0019 29.0 4.7 46 74-119 4-54 (112)
143 COG1379 PHP family phosphoeste 30.3 23 0.00049 38.6 0.9 34 151-185 243-276 (403)
144 COG1326 Uncharacterized archae 29.3 45 0.00098 33.8 2.7 36 154-190 6-46 (201)
145 TIGR02159 PA_CoA_Oxy4 phenylac 29.1 10 0.00022 36.6 -1.7 34 155-188 106-144 (146)
146 COG4049 Uncharacterized protei 28.6 28 0.0006 28.6 0.9 22 151-173 15-36 (65)
147 PRK11827 hypothetical protein; 28.3 22 0.00048 29.4 0.3 32 155-188 9-40 (60)
148 PF15469 Sec5: Exocyst complex 28.0 1.4E+02 0.0031 29.1 6.1 77 19-98 94-174 (182)
149 PF09723 Zn-ribbon_8: Zinc rib 27.9 16 0.00036 27.6 -0.5 31 152-182 3-34 (42)
150 TIGR02605 CxxC_CxxC_SSSS putat 27.2 19 0.00041 28.1 -0.2 31 152-182 3-34 (52)
151 PF10571 UPF0547: Uncharacteri 26.8 31 0.00066 23.8 0.8 25 156-186 2-26 (26)
152 PF04505 Dispanin: Interferon- 26.8 70 0.0015 27.8 3.2 25 17-41 43-67 (82)
153 TIGR02552 LcrH_SycD type III s 26.2 1.6E+02 0.0035 26.2 5.7 43 12-54 52-94 (135)
154 PF10263 SprT-like: SprT-like 26.1 30 0.00065 32.8 0.9 37 151-187 120-156 (157)
155 PF14435 SUKH-4: SUKH-4 immuni 25.8 82 0.0018 30.6 3.9 54 485-538 38-105 (179)
156 PF14346 DUF4398: Domain of un 25.8 1.4E+02 0.0031 26.5 5.1 36 5-40 39-74 (103)
157 cd04370 BAH BAH, or Bromo Adja 25.7 1.2E+02 0.0027 26.7 4.8 41 431-471 3-48 (123)
158 PF08274 PhnA_Zn_Ribbon: PhnA 25.7 29 0.00062 24.9 0.5 24 156-182 4-27 (30)
159 cd00189 TPR Tetratricopeptide 25.6 1.9E+02 0.004 22.0 5.4 32 14-45 3-34 (100)
160 PF09538 FYDLN_acid: Protein o 25.5 28 0.0006 32.1 0.5 29 155-187 10-39 (108)
161 PRK15359 type III secretion sy 24.0 2.6E+02 0.0056 26.2 6.8 37 11-47 58-94 (144)
162 PRK10370 formate-dependent nit 23.5 2.1E+02 0.0045 28.5 6.4 38 11-48 73-110 (198)
163 PF14561 TPR_20: Tetratricopep 22.9 4.8E+02 0.01 22.9 7.8 34 11-44 22-55 (90)
164 TIGR02552 LcrH_SycD type III s 22.9 2.6E+02 0.0055 24.9 6.4 42 11-52 17-58 (135)
165 PF02064 MAS20: MAS20 protein 22.8 1.7E+02 0.0038 27.5 5.2 37 15-51 67-103 (121)
166 PF13424 TPR_12: Tetratricopep 22.3 1.4E+02 0.0031 24.2 4.2 33 9-41 44-76 (78)
167 PF04733 Coatomer_E: Coatomer 22.2 1.9E+02 0.0041 30.8 6.1 66 14-96 204-269 (290)
168 PRK05685 fliS flagellar protei 22.1 1.6E+02 0.0035 27.7 4.9 36 9-44 33-68 (132)
169 TIGR03302 OM_YfiO outer membra 21.8 5.2E+02 0.011 25.5 8.9 31 15-45 170-200 (235)
170 smart00661 RPOL9 RNA polymeras 21.8 45 0.00098 25.7 1.0 30 156-185 2-31 (52)
171 PF07721 TPR_4: Tetratricopept 21.5 1.1E+02 0.0025 20.3 2.8 22 14-35 4-25 (26)
172 smart00659 RPOLCX RNA polymera 21.5 68 0.0015 24.8 1.9 32 155-189 3-34 (44)
173 PRK05978 hypothetical protein; 21.2 37 0.00081 33.0 0.5 37 152-189 31-67 (148)
174 COG1645 Uncharacterized Zn-fin 21.1 57 0.0012 31.1 1.6 33 155-192 29-62 (131)
175 TIGR00208 fliS flagellar biosy 20.6 1.8E+02 0.004 27.1 4.9 36 9-44 29-64 (124)
176 PF10041 DUF2277: Uncharacteri 20.2 3E+02 0.0065 24.0 5.6 44 65-108 4-47 (78)
177 PRK15179 Vi polysaccharide bio 20.2 5.6E+02 0.012 31.0 10.0 111 11-122 86-224 (694)
178 smart00731 SprT SprT homologue 20.0 53 0.0012 31.3 1.3 36 151-186 109-145 (146)
No 1
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=5.7e-84 Score=645.49 Aligned_cols=212 Identities=48% Similarity=0.814 Sum_probs=198.8
Q ss_pred CCCcceeccCCCCCCCcCcccccCCCCCCEEEEecCCCCCccceeEEEEE-ecCCcEEEEEeeccCCCCCccccceecCC
Q 006401 408 KDLEIMAVEDSDFYDFDRDRMERSFKKGQVWAIYDDDDGMPRHYGLIDEV-SVNPFEVKISWLDLQSNGDEGLICWEKQG 486 (646)
Q Consensus 408 ~~~~~~~~pd~dF~dFd~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV-~~~~fkl~i~wLe~~~~~~~~~~~W~~~~ 486 (646)
..+..|+||||||||||++|++++|++|||||+||+.||||||||||+|| +.+||+|||+|||++++ .+.+++|++++
T Consensus 4 ~~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~-~e~~~~w~~~~ 82 (217)
T PF11926_consen 4 SSPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPD-SEEEIRWEDEG 82 (217)
T ss_pred CCCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCC-cccceeeeecC
Confidence 44788999999999999999999999999999999999999999999999 55699999999999988 45599999999
Q ss_pred ceeeeeeEEeCceeeeccCCceEEEEEE-EEcCCceEEEeCCCCcEeEEecCCCCCCCCCCcCCCCCcceeEEEEecccc
Q 006401 487 FHVSCGRFKVSRKTSIDSLNIFSHIVEC-ERAAREVYRIFPTKGSVWALYNEAALGIEGSNLSARDRRSYDIVVLLTTYS 565 (646)
Q Consensus 487 ~pv~CG~F~~~~~~~~~~~~~FSH~v~~-~~~~~~~~~IyPrkGevWAlyk~W~~~w~~~~~~~~~~~~y~iVEvL~d~~ 565 (646)
|||+||+|++|+++++.++++|||+|.+ ..+.|+.|+|||||||||||||||+++|+.+ ++++..|+|||||||+||+
T Consensus 83 ~pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~-~~~~~~~~YdiVEVl~d~~ 161 (217)
T PF11926_consen 83 LPVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSS-TDDERKYEYDIVEVLSDYS 161 (217)
T ss_pred CceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcC-cCcCcccceEEEEEeecCC
Confidence 9999999999999999999999999965 5577899999999999999999999999966 4789999999999999999
Q ss_pred cCceeEEEEeeecCCccceeeecccCCcceEEeecCCccccccccCceeecCCCCC
Q 006401 566 EMHGLSMAYLEKVDGFKAVFKRREIGCHAIRWLEKDDVRLFSHQIPARKLTGDEIP 621 (646)
Q Consensus 566 ~~~g~~v~~L~kv~Gf~svF~~~~~~~~~~~~Ip~~e~~rFSHqIPs~~ltg~E~~ 621 (646)
++.||.|+||+||+||+|||++...+...++.||++||+|||||||||||||+|++
T Consensus 162 ~~~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee~e 217 (217)
T PF11926_consen 162 EEAGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEEGE 217 (217)
T ss_pred ccCcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCccCC
Confidence 99999999999999999999998776668999999999999999999999998863
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.6e-20 Score=197.95 Aligned_cols=72 Identities=40% Similarity=0.630 Sum_probs=68.2
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCC-CCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhc
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNP-HSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQ 134 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~-~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 134 (646)
..|||+||||+++|+.+|||||||+||++||||+|+ .+.|+++|++|++||+|||||+||+.||+++.....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 479999999999999999999999999999999999 678999999999999999999999999999876654
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6e-19 Score=184.50 Aligned_cols=73 Identities=40% Similarity=0.635 Sum_probs=68.5
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc-hHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG-SEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQ 134 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~-a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 134 (646)
..+|||+||||+++|+..+||+|||||||+||||||+... |.+.|+.|+.||+|||||++|+.||..+..++.
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 4689999999999999999999999999999999999765 899999999999999999999999999976655
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.3e-17 Score=175.39 Aligned_cols=68 Identities=49% Similarity=0.721 Sum_probs=63.7
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
.|||+||||+++||.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 699999999999999999999999999999999974 45889999999999999999999999987754
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.2e-17 Score=175.57 Aligned_cols=69 Identities=33% Similarity=0.499 Sum_probs=65.4
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.||+.||+++..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 369999999999999999999999999999999998878999999999999999999999999987654
No 6
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=4.8e-16 Score=162.72 Aligned_cols=120 Identities=28% Similarity=0.341 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHH
Q 006401 8 EREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKK 87 (646)
Q Consensus 8 ~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrk 87 (646)
.+.|.-+.++||++|...+|+.|+..+++|+.++++...+.+-+..+.-+....+.+|||.||||.++|+..+|.||||+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRK 417 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRK 417 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred hHHhhCCCCCCCCc----hHHHHHHHHHHHHHhcCchhhHHHHH
Q 006401 88 LALILHPDKNPHSG----SEEAFKLVGEAFRVLSDKVRRKEYDM 127 (646)
Q Consensus 88 lal~~HPDKn~~~~----a~~~F~~I~eAy~vLsDp~kR~~YD~ 127 (646)
||.+||||-..... |+.+|.-|..|-+||+||++|+.||.
T Consensus 418 lAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 418 LAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 99999999766543 78899999999999999999999994
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=169.25 Aligned_cols=72 Identities=43% Similarity=0.634 Sum_probs=66.9
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhccc
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQDE 136 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~~ 136 (646)
...||+||||.++|+.+|||||||+||++||||||+. +.++|++|.+||+|||||++|..||+++..+.+..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 4689999999999999999999999999999999986 89999999999999999999999999997766443
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.7e-16 Score=170.68 Aligned_cols=68 Identities=50% Similarity=0.710 Sum_probs=63.6
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC-chHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS-GSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~-~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..|||+||||+++|+.++||+|||+||++||||+|+.. .|++.|++|++||+||+||.||+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 36999999999999999999999999999999999743 588999999999999999999999998864
No 9
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.61 E-value=7.7e-16 Score=125.73 Aligned_cols=62 Identities=42% Similarity=0.683 Sum_probs=60.0
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--hHHHHHHHHHHHHHhcCchhhHHHH
Q 006401 65 EWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRKEYD 126 (646)
Q Consensus 65 d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--a~~~F~~I~eAy~vLsDp~kR~~YD 126 (646)
|||+||||+++++.++||++|+++++.+|||++.... +.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998877 8899999999999999999999998
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.2e-16 Score=167.34 Aligned_cols=70 Identities=39% Similarity=0.585 Sum_probs=64.5
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 3699999999999999999999999999999999974 458899999999999999999999999876543
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=8.3e-16 Score=166.81 Aligned_cols=69 Identities=35% Similarity=0.598 Sum_probs=64.9
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||+||+||.+|+.||+++..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 369999999999999999999999999999999998777899999999999999999999999987654
No 12
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1e-15 Score=166.52 Aligned_cols=70 Identities=39% Similarity=0.628 Sum_probs=65.9
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||+|+...|+++|++|++||+||+||.+|+.||+++..+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 5799999999999999999999999999999999987789999999999999999999999999977543
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=9.8e-16 Score=166.72 Aligned_cols=70 Identities=39% Similarity=0.549 Sum_probs=65.7
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 3699999999999999999999999999999999988889999999999999999999999999876543
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.2e-15 Score=160.44 Aligned_cols=68 Identities=44% Similarity=0.633 Sum_probs=64.5
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
.|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||++|+||.+|+.||.++..
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 69999999999999999999999999999999998778999999999999999999999999987643
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.59 E-value=1.1e-15 Score=168.02 Aligned_cols=67 Identities=37% Similarity=0.544 Sum_probs=62.1
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||||+ ..++|++|++||+||+||.+|+.||..+...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~---~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG---DPEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc---hHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 479999999999999999999999999999999985 3689999999999999999999999877543
No 16
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.1e-15 Score=166.04 Aligned_cols=69 Identities=41% Similarity=0.671 Sum_probs=65.2
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+|+...++++|++|++||+||+||.+|+.||+++..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 469999999999999999999999999999999998777899999999999999999999999987754
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.4e-15 Score=165.64 Aligned_cols=70 Identities=41% Similarity=0.594 Sum_probs=65.7
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||+|+.+.++++|++|++||+||+||.+|+.||.++...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 3699999999999999999999999999999999988889999999999999999999999999877543
No 18
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-15 Score=155.53 Aligned_cols=73 Identities=33% Similarity=0.535 Sum_probs=67.6
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhcc
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQD 135 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~ 135 (646)
..|+|+|||++++|+.++|||+||+|++++|||+++. +.+...|++|++||+||+||.+|..||..+..+...
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 5789999999999999999999999999999999987 569999999999999999999999999998665543
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2e-15 Score=164.18 Aligned_cols=68 Identities=38% Similarity=0.651 Sum_probs=65.0
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||.++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 69999999999999999999999999999999998888999999999999999999999999987654
No 20
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.5e-15 Score=165.29 Aligned_cols=67 Identities=37% Similarity=0.587 Sum_probs=63.7
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|+.||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 5999999999999999999999999999999999877788999999999999999999999998654
No 21
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-15 Score=162.90 Aligned_cols=74 Identities=38% Similarity=0.595 Sum_probs=67.5
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--hHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhccc
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQDE 136 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~~ 136 (646)
.++||+||||..+|++.+||++||+|||+||||||+..- |.+.|++|+.||+|||||..|+.||..+.+.+.+.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 478999999999999999999999999999999987654 78899999999999999999999999887666554
No 22
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.2e-15 Score=163.34 Aligned_cols=69 Identities=38% Similarity=0.610 Sum_probs=63.5
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC--CchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH--SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~--~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|++.|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 4699999999999999999999999999999999975 34788999999999999999999999987643
No 23
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.7e-15 Score=162.47 Aligned_cols=69 Identities=36% Similarity=0.573 Sum_probs=63.8
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC-chHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS-GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~-~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
.|||+||||+++|+.++||+|||+||++||||+|+.. .|.++|++|++||+||+||.+|+.||.++...
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 6999999999999999999999999999999998754 47889999999999999999999999877543
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.1e-15 Score=163.17 Aligned_cols=70 Identities=39% Similarity=0.624 Sum_probs=64.4
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||.++...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 3699999999999999999999999999999999985 458899999999999999999999999877543
No 25
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-15 Score=155.41 Aligned_cols=74 Identities=35% Similarity=0.547 Sum_probs=68.4
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc-hHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhccc
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG-SEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQDE 136 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~-a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~~ 136 (646)
..|||+||||+.+|+..+|++|||+.|+++|||||+... |.+.|+.|.+||+||+|+.+|..||..++.+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 579999999999999999999999999999999999765 89999999999999999999999999998765443
No 26
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=4.1e-15 Score=162.35 Aligned_cols=65 Identities=46% Similarity=0.681 Sum_probs=61.5
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC-chHHHHHHHHHHHHHhcCchhhHHHHHH
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS-GSEEAFKLVGEAFRVLSDKVRRKEYDMR 128 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~-~a~~~F~~I~eAy~vLsDp~kR~~YD~~ 128 (646)
.|||+||||+++|+.++||+|||+||++||||+++.. .|+++|++|++||+||+||.+|+.||+.
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 74 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEA 74 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 6999999999999999999999999999999999754 5889999999999999999999999983
No 27
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.1e-15 Score=161.15 Aligned_cols=70 Identities=41% Similarity=0.615 Sum_probs=64.5
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+.++||+|||+||++||||+++. +.+++.|+.|++||+||+||.+|+.||+++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 4699999999999999999999999999999999974 458899999999999999999999999887543
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.9e-15 Score=161.87 Aligned_cols=68 Identities=44% Similarity=0.660 Sum_probs=63.4
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
.|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||+||+||.+|+.||+++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 489999999999999999999999999999999985 45889999999999999999999999987754
No 29
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=8.3e-15 Score=157.91 Aligned_cols=73 Identities=32% Similarity=0.514 Sum_probs=67.4
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc----hHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG----SEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQ 134 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~----a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 134 (646)
.+.|||.+|+|+++|+.++|++|||++++.|||||...+. |++.|+.|.+||+|||||.+|+.||.++..++.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4569999999999999999999999999999999988664 889999999999999999999999999877654
No 30
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.1e-15 Score=160.76 Aligned_cols=69 Identities=39% Similarity=0.648 Sum_probs=63.7
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+++. ..|+++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 3699999999999999999999999999999999975 34788999999999999999999999987654
No 31
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.5e-15 Score=161.60 Aligned_cols=69 Identities=39% Similarity=0.627 Sum_probs=63.9
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC-chHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS-GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~-~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
.|||+||||+++|+.++||+|||+||++||||+|+.. .|+++|++|++||+||+||.+|+.||+++...
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 6999999999999999999999999999999999753 58899999999999999999999999876543
No 32
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.5e-14 Score=154.64 Aligned_cols=113 Identities=35% Similarity=0.526 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhC
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILH 93 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~H 93 (646)
++.+|++++..++|++|.+.+.+|.++..+. .+.++|..+......++..|||.|||+.++|+..+|+++||++++.+|
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~-e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~H 402 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKDC-EIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHH 402 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhC
Confidence 4778999999999999999999999999994 488999888887777789999999999999999999999999999999
Q ss_pred CCCCCCC--chHHHHHHHHHHHHHhcCchhhHHHHH
Q 006401 94 PDKNPHS--GSEEAFKLVGEAFRVLSDKVRRKEYDM 127 (646)
Q Consensus 94 PDKn~~~--~a~~~F~~I~eAy~vLsDp~kR~~YD~ 127 (646)
||++... .++..|+.|.+||.+|+||.+|..||.
T Consensus 403 pd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 403 PDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred CCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 9998866 378889999999999999999999994
No 33
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8.2e-15 Score=159.03 Aligned_cols=69 Identities=41% Similarity=0.674 Sum_probs=63.7
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|+++|++|++||++|+||.+|+.||.++..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 4699999999999999999999999999999999974 34789999999999999999999999987654
No 34
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=9.5e-15 Score=159.88 Aligned_cols=69 Identities=43% Similarity=0.696 Sum_probs=63.8
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
.|||+||||+++|+.++||+|||+||++||||+++. ..|++.|++|++||+||+||.+|+.||.++...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 599999999999999999999999999999999975 357899999999999999999999999877543
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.2e-14 Score=157.83 Aligned_cols=69 Identities=35% Similarity=0.510 Sum_probs=64.8
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
.|||+||||+++|+.++||+|||+||++||||+++...++++|++|++||++|+|+.+|+.||.++...
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 699999999999999999999999999999999987778999999999999999999999999876543
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.52 E-value=1.2e-14 Score=156.80 Aligned_cols=68 Identities=41% Similarity=0.609 Sum_probs=63.9
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 65 EWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 65 d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
|||+||||+++|+.++||+|||+||++||||+++...+++.|++|++||+||+||.+|..||.++...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999986678999999999999999999999999876543
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.52 E-value=1.5e-14 Score=153.23 Aligned_cols=66 Identities=44% Similarity=0.713 Sum_probs=63.4
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
.|||+||||+++|+.++||+|||+||+++|||+++...++++|++|++||++|+||.+|+.||..+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 699999999999999999999999999999999987789999999999999999999999999865
No 38
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.4e-14 Score=152.10 Aligned_cols=70 Identities=33% Similarity=0.582 Sum_probs=67.0
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
..|||+||||+++|+..|||+||++||++||||.|...+|.+.|+.|.+||+||+|+++|..||..+..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999999999999999999999999999999999999999999999999999999999988764
No 39
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.5e-14 Score=156.98 Aligned_cols=68 Identities=38% Similarity=0.631 Sum_probs=64.5
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
+|||+||||+++|+.++||+|||+|++++|||+++...++++|++|++||+||+||.+|+.||.++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 59999999999999999999999999999999998777999999999999999999999999987653
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.51 E-value=1.9e-14 Score=166.57 Aligned_cols=72 Identities=28% Similarity=0.345 Sum_probs=67.2
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKI 133 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~ 133 (646)
...+||+||||+++|+..+||+|||+||+++||||++.+.|...|+.|++||+|||||.+|+.||..+..++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 568999999999999999999999999999999999887788999999999999999999999998776543
No 41
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.7e-15 Score=160.68 Aligned_cols=129 Identities=30% Similarity=0.431 Sum_probs=93.3
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhcccc-cc-
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQDEK-VA- 139 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~~~-~~- 139 (646)
..+|+|.||||++++++++|||.||++|.+.|||||..+.|+++|+.|+.||++|+|+.+|..||..+.....-.. +.
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~~~~~~ 312 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELHRQVIS 312 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999988853321110 00
Q ss_pred -cCCCCCCCCCccceeeeccccchhhHHHH-h-hccceeecCCCCCceeeeeccC
Q 006401 140 -LDDNDDGFAGKETFWTACSRCRLLHQFER-K-YLDQILVCPGCKMSFEAVEAKE 191 (646)
Q Consensus 140 -~~~~~~~~~~~~tFwt~C~~C~~~yey~r-~-y~~~~l~C~~C~~~f~A~e~~~ 191 (646)
....+.. .....-...|.+|+..|---- . ---....|+.|+.-+.|.+-..
T Consensus 313 ~~~~~~~~-~eEA~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~AKdgdi 366 (490)
T KOG0720|consen 313 SLNDLQKA-VEEARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPAKDGDI 366 (490)
T ss_pred HHHHHHHH-HHHHHhheehhhhcCcceeeeecCChhhhHHHHHhCccCccccCCE
Confidence 0000000 000122345888887654211 1 1123467999999999988443
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.1e-14 Score=155.99 Aligned_cols=68 Identities=35% Similarity=0.586 Sum_probs=64.7
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
.|||+||||+++|+.++||+|||+|++++|||+++...++++|++|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 59999999999999999999999999999999998888999999999999999999999999987653
No 43
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.2e-14 Score=155.36 Aligned_cols=68 Identities=40% Similarity=0.671 Sum_probs=63.3
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC--chHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS--GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~--~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
.|||+||||+++|+.++||+|||+|++++|||+++.. .|++.|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 5999999999999999999999999999999999754 4889999999999999999999999987654
No 44
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=4.4e-14 Score=154.13 Aligned_cols=69 Identities=41% Similarity=0.664 Sum_probs=64.0
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC-chHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS-GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~-~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..|||+||||+++|+.++||+|||+||++||||+|+.. .|+++|+.|++||++|+||.+|+.||.+...
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 46999999999999999999999999999999999754 5889999999999999999999999987654
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.46 E-value=8.8e-14 Score=111.79 Aligned_cols=58 Identities=48% Similarity=0.785 Sum_probs=53.6
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCC--CCchHHHHHHHHHHHHHhcCchh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNP--HSGSEEAFKLVGEAFRVLSDKVR 121 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~--~~~a~~~F~~I~eAy~vLsDp~k 121 (646)
.|||+||||+++++.++||++|++|++.+|||++. ...+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999988 45688999999999999999853
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=138.14 Aligned_cols=70 Identities=40% Similarity=0.612 Sum_probs=63.2
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC---chHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS---GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~---~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
...|+|+||||.++|+..+||+||++|+|++|||+++.. .+...|+.|+.||.||+|.++|+.||..+..
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 467999999999999999999999999999999998622 3788999999999999999999999976543
No 47
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.42 E-value=2.5e-13 Score=107.19 Aligned_cols=54 Identities=54% Similarity=0.840 Sum_probs=51.3
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcC
Q 006401 65 EWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSD 118 (646)
Q Consensus 65 d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsD 118 (646)
|||+||||+++++.++||++||+|++++|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999876 5688999999999999987
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.3e-13 Score=129.01 Aligned_cols=67 Identities=48% Similarity=0.755 Sum_probs=63.3
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--hHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
..|||+||||.++|+..+|+++||++++++|||+++... +.+.|+.|++||++|+|+.+|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 479999999999999999999999999999999999776 8899999999999999999999999753
No 49
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.35 E-value=1e-12 Score=149.67 Aligned_cols=69 Identities=30% Similarity=0.487 Sum_probs=64.9
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
.|||+||||+++|+.++||++||+|++++|||++....+..+|+.|++||++|+||.+|+.||..+..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 599999999999999999999999999999999988778889999999999999999999999887544
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2e-12 Score=128.35 Aligned_cols=70 Identities=33% Similarity=0.593 Sum_probs=64.8
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC-chHHHHHHHHHHHHHhcCchhhHHHHHHhhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS-GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRI 131 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~-~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~ 131 (646)
..-|+|+||||+++|+..|||+|||+|++++||||++.. +.++.|..|.+||+.|+|+..|..|..+++.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 678999999999999999999999999999999999884 5677789999999999999999999988754
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=7.2e-12 Score=122.52 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=59.4
Q ss_pred cChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
.|||+||||++. ++..+|+++||+|++++|||+....+ +...|..|++||++|+||.+|+.|+..+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999996 67899999999999999999976554 45679999999999999999999997664
No 52
>PHA03102 Small T antigen; Reviewed
Probab=99.27 E-value=3.2e-12 Score=122.47 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=59.3
Q ss_pred cChhhhhcCCCCC--CHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPFS--HINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~A--s~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..+|+||||+++| |.++||+|||++++++||||+ +.++.|+.|++||++|+|+.+|..||..+.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence 3679999999999 999999999999999999996 457899999999999999999999997664
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.25 E-value=1.1e-11 Score=120.70 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=58.4
Q ss_pred cChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc----hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG----SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~----a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
.|||+||||++. ++..+|+++||+|++++|||++.... +...+..|++||+||+||.+|+.|+..+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999997 78999999999999999999986432 22347899999999999999999997764
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.19 E-value=3.8e-11 Score=117.62 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=61.5
Q ss_pred CCcChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
+..|||++|||++. .+..+|+++||+|++++|||++...+ +...|..|++||.+|+||.+|+.|+..+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46799999999998 56899999999999999999986654 45679999999999999999999998775
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.7e-11 Score=123.94 Aligned_cols=68 Identities=31% Similarity=0.534 Sum_probs=65.2
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
+..|.|+||||.+.|+..+|.+|||+||+++|||+++.+.+...|+.|..||++|.|.+.|..||-.+
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999655
No 56
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=4.3e-11 Score=117.56 Aligned_cols=68 Identities=19% Similarity=0.410 Sum_probs=59.2
Q ss_pred CcChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 63 SKEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 63 ~~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..|||+||||++. ++..+|+++||+|++++|||++...+ +.+.+..|++||.+|+||.+|+.|+..+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999986 58899999999999999999987544 23346899999999999999999998765
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-10 Score=119.00 Aligned_cols=68 Identities=46% Similarity=0.684 Sum_probs=62.8
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC--chHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS--GSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~--~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..|||.||+|.+.|+.++|++||+++++.+||||++.. .++.+|++|.+||++|+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 36999999999999999999999999999999998887 466689999999999999999999998775
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=112.03 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=50.0
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC--------chHHHHHHHHHHHHHhcC
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS--------GSEEAFKLVGEAFRVLSD 118 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~--------~a~~~F~~I~eAy~vLsD 118 (646)
.|+|+||||++++|.++||++||+|++++|||++... .++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999997542 267899999999999974
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.96 E-value=7.8e-10 Score=101.35 Aligned_cols=53 Identities=34% Similarity=0.434 Sum_probs=48.6
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLS 117 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLs 117 (646)
...++|+||||+++++.++||++||+|++++|||+. ++.+.|..|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 346999999999999999999999999999999984 56789999999999994
No 60
>PHA02624 large T antigen; Provisional
Probab=98.86 E-value=2.2e-09 Score=121.55 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=56.3
Q ss_pred cChhhhhcCCCCC--CHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHH
Q 006401 64 KEWYQILQVEPFS--HINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEY 125 (646)
Q Consensus 64 ~d~Y~ILgV~~~A--s~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~Y 125 (646)
.++|+||||+++| +.++||+|||++|+++||||+ ++++.|+.|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 5899999999999 999999999999999999995 5688999999999999999999999
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.77 E-value=1.3e-08 Score=99.81 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=59.5
Q ss_pred cChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
.|||++|||++. .+...++++|++|.+.+|||+....+ +.+.-..|++||.+|+||.+|+.|=..+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 589999999987 79999999999999999999987665 34457899999999999999999987665
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.1e-08 Score=100.60 Aligned_cols=64 Identities=34% Similarity=0.666 Sum_probs=58.5
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--hHHHHHHHHHHHHHhcCchhhHHHH
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRKEYD 126 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--a~~~F~~I~eAy~vLsDp~kR~~YD 126 (646)
..++|+||+|.|..+.++||+.||+|+++.|||||+... |..+|-.|.+||..|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 569999999999999999999999999999999999874 8899999999999999998776544
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.66 E-value=4.3e-08 Score=94.79 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 76 SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 76 As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
.+..+|+++||+|++++|||+....+ +...|..|++||++|+||.+|+.|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 47789999999999999999975543 55779999999999999999999998876
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.63 E-value=5.7e-08 Score=105.24 Aligned_cols=69 Identities=33% Similarity=0.521 Sum_probs=62.6
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..-|+|+|||++.+++..+||++||+|+.++||||.+.-- -++.++.|++||..|+|...|..|-.++.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 6789999999999999999999999999999999977621 57789999999999999999999987764
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-07 Score=97.06 Aligned_cols=65 Identities=35% Similarity=0.479 Sum_probs=58.9
Q ss_pred CCcChhhhhcCCC---CCCHHHHHHHHHHhHHhhCCCCCCCC---chHHHHHHHHHHHHHhcCchhhHHHH
Q 006401 62 KSKEWYQILQVEP---FSHINTIKKQYKKLALILHPDKNPHS---GSEEAFKLVGEAFRVLSDKVRRKEYD 126 (646)
Q Consensus 62 ~~~d~Y~ILgV~~---~As~~eIKkaYrklal~~HPDKn~~~---~a~~~F~~I~eAy~vLsDp~kR~~YD 126 (646)
+..|+|.+|||+. .|+..+|.++.++..++||||+.... +..+.|++|+.||+||+|+.+|..||
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyD 111 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYD 111 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcc
Confidence 5679999999985 57899999999999999999997443 37899999999999999999999999
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.7e-05 Score=77.63 Aligned_cols=57 Identities=32% Similarity=0.540 Sum_probs=51.7
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHH-HhcC
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFR-VLSD 118 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~-vLsD 118 (646)
.-+.+|.||||...|+.++++.+|..|++++|||........+.|..|.+||. ||+.
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999998777777889999999998 7863
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=5.2e-05 Score=89.14 Aligned_cols=53 Identities=40% Similarity=0.553 Sum_probs=46.0
Q ss_pred CcChhhhhcCCCC----CCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhc
Q 006401 63 SKEWYQILQVEPF----SHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLS 117 (646)
Q Consensus 63 ~~d~Y~ILgV~~~----As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLs 117 (646)
..+-|+||.|+.+ .+.+.||+||++||.+||||||+ ...+.|..+++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 3477999999854 34589999999999999999996 56789999999999998
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0021 Score=58.06 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=43.1
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCc
Q 006401 67 YQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDK 119 (646)
Q Consensus 67 Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp 119 (646)
-.||||.++++.+.||.++|++-+.-|||+..++ -.-..|+||+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence 4599999999999999999999999999997544 4445799999999754
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0038 Score=60.10 Aligned_cols=68 Identities=24% Similarity=0.431 Sum_probs=55.3
Q ss_pred CcChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 63 SKEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 63 ~~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..+||.++|.... .++.-+.--|.-...++|||+...+. |.+....|++||.+|.||-+|+.|=.++.
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4689999987653 46666776899999999999843322 67789999999999999999999987764
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.30 E-value=0.0059 Score=68.69 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=48.7
Q ss_pred HhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--------hHHHHHHHHHHHHHh
Q 006401 45 EGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--------SEEAFKLVGEAFRVL 116 (646)
Q Consensus 45 ~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--------a~~~F~~I~eAy~vL 116 (646)
.+|+.||.++..++=.+ -. ..=+++.--.+.+.|||+|||..|.+||||.+..+ +++.|-.+++||...
T Consensus 372 ~NIRALLSTLh~VLW~e--s~-WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 372 GNIRALLSTLHYVLWPE--SG-WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccHHHHHHHHhHhhcCc--cC-cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 35788888877543221 11 22234444468999999999999999999988775 566678888888654
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.022 Score=56.08 Aligned_cols=54 Identities=31% Similarity=0.466 Sum_probs=46.8
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--------hHHHHHHHHHHHHHh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--------SEEAFKLVGEAFRVL 116 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--------a~~~F~~I~eAy~vL 116 (646)
..+.|.+|++...++..+|+++|+++....|||+....+ +.+.++.|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999999999999999999999965444 677788888888743
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.044 Score=53.96 Aligned_cols=66 Identities=23% Similarity=0.381 Sum_probs=51.1
Q ss_pred ChhhhhcCCCCC--CHHHHHHHHHHhHHhhCCCCCCCCch------HHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 65 EWYQILQVEPFS--HINTIKKQYKKLALILHPDKNPHSGS------EEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 65 d~Y~ILgV~~~A--s~~eIKkaYrklal~~HPDKn~~~~a------~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
|++.++|..+.+ +.+.++..|+.+.+.+|||+....+. -..+..++.||.+|.||-+|+.|=..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 344445554443 45678999999999999999876663 3458899999999999999999976654
No 73
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=93.63 E-value=0.15 Score=52.25 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=49.6
Q ss_pred CCCCEEEEecCC---------CCCccceeEEEEEe--cCCcEEEEEeeccCCCCCccccceecCCceeeeeeEEeCceee
Q 006401 433 KKGQVWAIYDDD---------DGMPRHYGLIDEVS--VNPFEVKISWLDLQSNGDEGLICWEKQGFHVSCGRFKVSRKTS 501 (646)
Q Consensus 433 ~~gQIWA~Yd~~---------DgmPR~Ya~I~kV~--~~~fkl~i~wLe~~~~~~~~~~~W~~~~~pv~CG~F~~~~~~~ 501 (646)
+.|.|||||-++ |-.+.-|..|.=++ ...--+.|..|.-- .+-....++...+ ..+.|.|-+
T Consensus 124 rkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~~~~gi~V~~L~Kv-~Gf~svF~~~~~~---~~~~~~Ip~--- 196 (217)
T PF11926_consen 124 RKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYSEEAGIKVAPLVKV-KGFKSVFKRAEEG---GEAVFTIPK--- 196 (217)
T ss_pred CcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCCccCcEEEEEEEEe-cCcEeeeeecCCC---CcceEEECh---
Confidence 789999999874 56677787777665 45577888888753 1111111111111 134555554
Q ss_pred eccCCceEEEEEEEEcCC
Q 006401 502 IDSLNIFSHIVECERAAR 519 (646)
Q Consensus 502 ~~~~~~FSH~v~~~~~~~ 519 (646)
..+..|||+|.+-+..+
T Consensus 197 -~E~~RFSHqIPa~rltg 213 (217)
T PF11926_consen 197 -SELLRFSHQIPAFRLTG 213 (217)
T ss_pred -HHcCeeeccCCCEEccC
Confidence 45789999999887433
No 74
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=91.43 E-value=0.092 Score=38.66 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=27.3
Q ss_pred eeccccchhhHHHHhhcc---ceeecCCCCCceeee
Q 006401 155 TACSRCRLLHQFERKYLD---QILVCPGCKMSFEAV 187 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~---~~l~C~~C~~~f~A~ 187 (646)
..|++|+..|.+....+. ..+.|++|+..|.|+
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 469999999999887663 358999999999874
No 75
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=90.22 E-value=0.094 Score=42.32 Aligned_cols=36 Identities=19% Similarity=0.531 Sum_probs=28.6
Q ss_pred CccceeeeccccchhhHHHHhhccc---eeecCCCCCcee
Q 006401 149 GKETFWTACSRCRLLHQFERKYLDQ---ILVCPGCKMSFE 185 (646)
Q Consensus 149 ~~~tFwt~C~~C~~~yey~r~y~~~---~l~C~~C~~~f~ 185 (646)
...+|++.| |||+.|.+....+.. .+.|++|++.+.
T Consensus 13 ~~~~~~y~C-RCG~~f~i~e~~l~~~~~iv~C~sCSL~I~ 51 (55)
T PF05207_consen 13 EEGVYSYPC-RCGGEFEISEEDLEEGEVIVQCDSCSLWIR 51 (55)
T ss_dssp TTTEEEEEE-TTSSEEEEEHHHHHCT--EEEETTTTEEEE
T ss_pred CCCEEEEcC-CCCCEEEEcchhccCcCEEEECCCCccEEE
Confidence 344788899 999999988877733 478999998764
No 76
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.52 E-value=0.97 Score=31.20 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
|.-+..+|..++..+++..|++.+++|.+++|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 455678999999999999999999999999996
No 77
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=86.90 E-value=0.34 Score=35.85 Aligned_cols=31 Identities=23% Similarity=0.620 Sum_probs=26.6
Q ss_pred eeccccchhhHHHHhhc---cceeecCCCCCcee
Q 006401 155 TACSRCRLLHQFERKYL---DQILVCPGCKMSFE 185 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~---~~~l~C~~C~~~f~ 185 (646)
+.|+.|+..|.+....+ +..++|+.|+..|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57999999999988765 55899999999885
No 78
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=0.4 Score=39.78 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=28.9
Q ss_pred CccceeeeccccchhhHHHHhhc--cc-eeecCCCCCceee
Q 006401 149 GKETFWTACSRCRLLHQFERKYL--DQ-ILVCPGCKMSFEA 186 (646)
Q Consensus 149 ~~~tFwt~C~~C~~~yey~r~y~--~~-~l~C~~C~~~f~A 186 (646)
+..+|...| .||..|++...-+ |. ...|++|++.+..
T Consensus 17 e~~~y~yPC-pCGDrf~It~edL~~ge~Va~CpsCSL~I~V 56 (67)
T KOG2923|consen 17 ENQTYYYPC-PCGDRFQITLEDLENGEDVARCPSCSLIIRV 56 (67)
T ss_pred CCCeEEcCC-CCCCeeeecHHHHhCCCeeecCCCceEEEEE
Confidence 456888888 8999999888765 33 5689999997654
No 79
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.31 E-value=2.4 Score=29.50 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
|.-+..+|..++..+++..|...+.+|.+++|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456778999999999999999999999999996
No 80
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.02 E-value=2.3 Score=31.93 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
-+..+|..++..|++++|.+.++++.+++|....+-..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 356789999999999999999999999999987655444
No 81
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=83.40 E-value=0.6 Score=34.46 Aligned_cols=31 Identities=16% Similarity=0.517 Sum_probs=25.7
Q ss_pred eeccccchhhHHHHhhc---cceeecCCCCCcee
Q 006401 155 TACSRCRLLHQFERKYL---DQILVCPGCKMSFE 185 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~---~~~l~C~~C~~~f~ 185 (646)
..|+.|+..|.+....+ +..+.|+.|+..|.
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 46999999999988866 44689999998873
No 82
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=82.02 E-value=2.8 Score=39.62 Aligned_cols=51 Identities=31% Similarity=0.203 Sum_probs=36.6
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCc
Q 006401 66 WYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDK 119 (646)
Q Consensus 66 ~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp 119 (646)
-..||||++..+.++|.+.|.+|-..-+|++. |..--=..|..|.+.|...
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999975 4445556678888877543
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.73 E-value=4.1 Score=32.63 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVT 52 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~ 52 (646)
.|.-+..+|..++..+++..|...+.+|.+++|....+--.+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g 44 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLG 44 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4788899999999999999999999999999999865433333
No 84
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=75.15 E-value=61 Score=34.60 Aligned_cols=33 Identities=6% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
.....+|..++..+++..|.+++.++..+.|..
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 345668888999999999999999999998874
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.05 E-value=22 Score=37.15 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=54.6
Q ss_pred cHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHH
Q 006401 7 AEREASRL-KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQY 85 (646)
Q Consensus 7 ~~deA~r~-~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaY 85 (646)
.+.||..+ +++|..+|+.+|+..|+.-+.||.+.+|+....--.++ -+|.-+|....|. .+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A------------~~Yq~~Ge~~~A~------e~ 91 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRA------------HYYQKLGENDLAD------ES 91 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH------------HHHHHcCChhhHH------HH
Confidence 45666666 78999999999999999999999999999875332222 4588888655443 34
Q ss_pred HHhHHhhCCCC
Q 006401 86 KKLALILHPDK 96 (646)
Q Consensus 86 rklal~~HPDK 96 (646)
.+.|+.+||+.
T Consensus 92 YrkAlsl~p~~ 102 (250)
T COG3063 92 YRKALSLAPNN 102 (250)
T ss_pred HHHHHhcCCCc
Confidence 45578899985
No 86
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=4.1 Score=43.93 Aligned_cols=55 Identities=27% Similarity=0.441 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHhHHhhCCCCCC-----CCchHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 75 FSHINTIKKQYKKLALILHPDKNP-----HSGSEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 75 ~As~~eIKkaYrklal~~HPDKn~-----~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
.++...|+.+|+..++.+||++.. ....++.|+.|.+||.+|.+..+|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 357788999999999999999874 2245777999999999999988777888655
No 87
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.83 E-value=10 Score=26.16 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
.-+..+|..+...++++.|...+.++.++.|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677899999999999999999999999883
No 88
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=68.16 E-value=2.1 Score=35.05 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=25.9
Q ss_pred CccceeeeccccchhhHHHHhhc--cc-eeecCCCCCcee
Q 006401 149 GKETFWTACSRCRLLHQFERKYL--DQ-ILVCPGCKMSFE 185 (646)
Q Consensus 149 ~~~tFwt~C~~C~~~yey~r~y~--~~-~l~C~~C~~~f~ 185 (646)
...+|...| -||..+++.-.-+ +. ..+||+|++-.-
T Consensus 17 e~~~ftyPC-PCGDRFeIsLeDl~~GE~VArCPSCSLiv~ 55 (67)
T COG5216 17 EEKTFTYPC-PCGDRFEISLEDLRNGEVVARCPSCSLIVC 55 (67)
T ss_pred CCceEEecC-CCCCEeEEEHHHhhCCceEEEcCCceEEEE
Confidence 446888889 6999999765433 44 458999998543
No 89
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=67.56 E-value=44 Score=39.96 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=33.2
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
.||=++| ++++| |--|||----++ .......+|..+ +|++.|.|.++...-|...
T Consensus 1048 ~DYEd~l------pP~ei---ySllALaaca~r-aFGtCSKAfmkL-e~~e~l~~a~kq~ye~La~ 1102 (1189)
T KOG2041|consen 1048 SDYEDFL------PPAEI---YSLLALAACAVR-AFGTCSKAFMKL-EAFEELDDAEKQEYENLAF 1102 (1189)
T ss_pred ccHhhcC------CHHHH---HHHHHHHHhhhh-hhhhhHHHHHHH-HhhhhCCHHHHHHHHHHHH
Confidence 5766666 45555 555666555553 233355667665 6888898877665555444
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.95 E-value=13 Score=40.09 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=38.1
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
+.+..|++++....+.|+.++|..|...+.+|-.|.|...
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 6899999999999999999999999999999999999964
No 91
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=66.55 E-value=12 Score=29.78 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=12.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCChH
Q 006401 22 FKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 22 l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
|..+++.+|.+.+.++...+|...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~ 25 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP 25 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH
Confidence 344555555555555555555443
No 92
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=66.30 E-value=5.5 Score=39.65 Aligned_cols=33 Identities=21% Similarity=0.592 Sum_probs=27.2
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
+.|+.|+..|.|.... +....|+.|+..+.-++
T Consensus 118 Y~Cp~C~~rytf~eA~-~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 118 FFCPNCHIRFTFDEAM-EYGFRCPQCGEMLEEYD 150 (178)
T ss_pred EECCCCCcEEeHHHHh-hcCCcCCCCCCCCeecc
Confidence 4699999999998754 55789999999888755
No 93
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.27 E-value=7.9 Score=34.69 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=30.4
Q ss_pred CcccccCCCCCCEEEEecCCCCCccceeEEEEEecCCcE
Q 006401 425 RDRMERSFKKGQVWAIYDDDDGMPRHYGLIDEVSVNPFE 463 (646)
Q Consensus 425 ~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~~~fk 463 (646)
.|.+|+.|++|+|-++|-.+|+ ||+|-|+-.++.|..
T Consensus 26 RD~SEShf~~g~vlrV~r~Ed~--~~fc~I~vl~vspvt 62 (106)
T COG3097 26 RDKSESHFKPGDVLRVGRFEDD--RYFCTIEVLAVSPVT 62 (106)
T ss_pred eccchhcCCCCCEEEEEEecCC--cEEEEEEEEEeccEe
Confidence 3668999999999999988876 899999866666644
No 94
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=65.49 E-value=3.1 Score=33.65 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=32.5
Q ss_pred eccccchhhHHHHhhccceeecCCCCCceeeeeccCC
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFEAVEAKES 192 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e~~~~ 192 (646)
.|+.|+...++....++..+.|+.|+..|..+...+.
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p~ 40 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDPL 40 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCCC
Confidence 5999999988888778999999999999998877663
No 95
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=64.88 E-value=18 Score=33.59 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
+...|+.++..+++..|.+.+.++..++|..+.+-+.+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~ 104 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMR 104 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3557778889999999999999999999999877665543
No 96
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.67 E-value=13 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
+..+|..++..++++.|++.+.+....+|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467888999999999999999999999996
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=62.41 E-value=16 Score=28.97 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHH
Q 006401 16 GIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFK 55 (646)
Q Consensus 16 ~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~ 55 (646)
..|..++..+++++|.+.+.++.+.+|....+.-.+..+-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~ 41 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRIL 41 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 5688899999999999999999999999766555555443
No 98
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.33 E-value=26 Score=28.05 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHH
Q 006401 16 GIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKI 56 (646)
Q Consensus 16 ~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v 56 (646)
-+|......++|..|++++..+.++.|....+.+|...++-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 46778889999999999999999999999888888877764
No 99
>PF13446 RPT: A repeated domain in UCH-protein
Probab=61.07 E-value=17 Score=29.54 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.6
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHhHH
Q 006401 65 EWYQILQVEPFSHINTIKKQYKKLAL 90 (646)
Q Consensus 65 d~Y~ILgV~~~As~~eIKkaYrklal 90 (646)
+-|.+|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999998876
No 100
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=59.93 E-value=3.7 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.8
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
+.|+.||..+.+..... .+.|+.|+..++-.+
T Consensus 4 y~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 4 YKCARCGREVELDEYGT--GVRCPYCGYRILFKE 35 (46)
T ss_pred EECCCCCCEEEECCCCC--ceECCCCCCeEEEcc
Confidence 45999999888875543 789999998887543
No 101
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=57.38 E-value=4.7 Score=39.35 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=23.4
Q ss_pred eccccchhh-H-----HHHh--hccceeecCCCCCceeeeecc
Q 006401 156 ACSRCRLLH-Q-----FERK--YLDQILVCPGCKMSFEAVEAK 190 (646)
Q Consensus 156 ~C~~C~~~y-e-----y~r~--y~~~~l~C~~C~~~f~A~e~~ 190 (646)
.||+|+... . |... .+.....|++|+..|.++|.-
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~ 44 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERV 44 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEec
Confidence 599999754 2 1111 122235699999999999864
No 102
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.91 E-value=83 Score=32.62 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=37.3
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.++++|-+++.-....|..+||.+|..-+..|..++|.+..
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 34788999999999999999999999999999999999754
No 103
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=56.76 E-value=19 Score=22.30 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
+..+|..++..+++..|...+.++.++.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 456788999999999999999999988875
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=55.84 E-value=69 Score=35.56 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=72.8
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCCCCHHHH
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPFSHINTI 81 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~As~~eI 81 (646)
....++++-+++....|..+.|..|+..+..|..++|..- ..+....-|..+.. .-.|+-.||.+.|+.....|
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi 110 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI 110 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence 4567899999999999999999999999999999999852 33444444433333 45788999999998766666
Q ss_pred HHHH--------------HHhHHhhCCCCCCCCchHHHHHHHHHHHH
Q 006401 82 KKQY--------------KKLALILHPDKNPHSGSEEAFKLVGEAFR 114 (646)
Q Consensus 82 KkaY--------------rklal~~HPDKn~~~~a~~~F~~I~eAy~ 114 (646)
.+.- -+.+++..|.-+....+.++...|.+-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~ 157 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV 157 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH
Confidence 5442 23345555554433334455555554443
No 105
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.29 E-value=40 Score=36.76 Aligned_cols=74 Identities=22% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCChhcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc-----CCcChhhhhcCCCCC
Q 006401 2 ETDPEAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS-----KSKEWYQILQVEPFS 76 (646)
Q Consensus 2 e~~~~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~-----~~~d~Y~ILgV~~~A 76 (646)
|-+|+...||+-++..|...-..|..+.|.+++..|..|.|....+ |..+-.+.... ...-|..-|-++|.-
T Consensus 107 e~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 107 ENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---LIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred ccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---HHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 4577899999999999999999999999999999999999997542 22222211111 234566777777765
Q ss_pred CH
Q 006401 77 HI 78 (646)
Q Consensus 77 s~ 78 (646)
+.
T Consensus 184 se 185 (472)
T KOG3824|consen 184 SE 185 (472)
T ss_pred hH
Confidence 44
No 106
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=54.55 E-value=1.5e+02 Score=32.40 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
..++..|...+..++|..|..++.+|.++.|....+.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~ 39 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELY 39 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3578889999999999999999999999999976543
No 107
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.91 E-value=10 Score=36.39 Aligned_cols=37 Identities=19% Similarity=0.452 Sum_probs=26.9
Q ss_pred eeeccccchhhHHHHhhcc----ceeecCCCCCceeeeecc
Q 006401 154 WTACSRCRLLHQFERKYLD----QILVCPGCKMSFEAVEAK 190 (646)
Q Consensus 154 wt~C~~C~~~yey~r~y~~----~~l~C~~C~~~f~A~e~~ 190 (646)
...|++|+..|.+...... ..+.||.|+..+.-.+-.
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~dn~ 139 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDDNS 139 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcCch
Confidence 4569999999988654321 138999999988765543
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=53.68 E-value=1.1e+02 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 16 GIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 16 ~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.+|..++..+++..|...+.+..+++|+.+.
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 4444445555555555555555555554443
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=52.63 E-value=32 Score=27.10 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
.+.-+..+|..++..+++.+|...+.++..++|..
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 35556778999999999999999999999999975
No 110
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.20 E-value=27 Score=39.04 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCCCCHHHHHHHHHHhHH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPFSHINTIKKQYKKLAL 90 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~As~~eIKkaYrklal 90 (646)
+.+|-.++..+++..|+....++..+.|... ..|...-.++++.. ...||-.+|.+.|+- .+|+.+..+|..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~--KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l~~ 336 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNV--KALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 4567777777777777777777777777642 12222222211111 235666777777643 444444444443
Q ss_pred hh
Q 006401 91 IL 92 (646)
Q Consensus 91 ~~ 92 (646)
+.
T Consensus 337 k~ 338 (397)
T KOG0543|consen 337 KI 338 (397)
T ss_pred HH
Confidence 33
No 111
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=49.98 E-value=27 Score=27.81 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 006401 10 EASRLKGIAETKFKNS-NLKSALKHAKKAQRLAP 42 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~-d~~gA~r~a~kA~~l~P 42 (646)
.+.-+..+|..++..+ ++..|++.+.+|.+++|
T Consensus 36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556677888899999 79999999999999998
No 112
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.03 E-value=68 Score=34.10 Aligned_cols=86 Identities=17% Similarity=0.334 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALI 91 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~ 91 (646)
..+.......+..+||.+|..++...+++--++.+ + ..+.-+.. .-.+++..+ .+.+...+.+++..
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~---~-~c~~~L~~--~L~e~~~~i-------~~~ld~~l~~~~~~ 194 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKG---Y-SCVRHLSS--QLQETLELI-------EEQLDSDLSKVCQD 194 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc---c-hHHHHHhH--HHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 34445567788999999999999988887433222 1 11111111 112334333 46788888888888
Q ss_pred hCCCCCCCCchHHHHHHHHHHHHHhcCc
Q 006401 92 LHPDKNPHSGSEEAFKLVGEAFRVLSDK 119 (646)
Q Consensus 92 ~HPDKn~~~~a~~~F~~I~eAy~vLsDp 119 (646)
+.|+ .|..|.+||..|++.
T Consensus 195 Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 195 FDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred CCHH---------HHHHHHHHHHHHhhh
Confidence 8777 588999999999954
No 113
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=48.91 E-value=33 Score=27.51 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=16.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 19 ETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 19 e~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
..++..+|+..|.+.+.++..++|...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~ 29 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDP 29 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccc
Confidence 345666666666666666666666643
No 114
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=46.66 E-value=16 Score=39.33 Aligned_cols=36 Identities=17% Similarity=0.626 Sum_probs=24.7
Q ss_pred CccceeeeccccchhhHHHHhhccceeecCCCCCcee
Q 006401 149 GKETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 149 ~~~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
.+...|+.|+.|+... |.+........|+.|+..|.
T Consensus 33 ~p~~lw~kc~~C~~~~-~~~~l~~~~~vcp~c~~h~r 68 (296)
T CHL00174 33 KYKHLWVQCENCYGLN-YKKFLKSKMNICEQCGYHLK 68 (296)
T ss_pred CCCCCeeECCCccchh-hHHHHHHcCCCCCCCCCCcC
Confidence 4456799999999852 33333344468999988664
No 115
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=45.60 E-value=9.6 Score=30.91 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=23.8
Q ss_pred ceeeeccccchhhH--HHH--hhccceeecCCCCCcee
Q 006401 152 TFWTACSRCRLLHQ--FER--KYLDQILVCPGCKMSFE 185 (646)
Q Consensus 152 tFwt~C~~C~~~ye--y~r--~y~~~~l~C~~C~~~f~ 185 (646)
..|..|+.|+..-. +.. ...|..|.|+.|+...+
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 46999999996432 222 23466789999988654
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=44.85 E-value=42 Score=26.47 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
-...+|..++..++++.|+..+.++...+|..+.+..+++.
T Consensus 27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 27 ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 34578999999999999999999999999997777776654
No 117
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=44.18 E-value=2e+02 Score=33.50 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=34.5
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
+..+.|..++..+..++..++|..|.+.+.+|..+.|..
T Consensus 122 ~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~ 160 (615)
T TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP 160 (615)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 344558889999999999999999999999999999974
No 118
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=43.72 E-value=15 Score=39.26 Aligned_cols=35 Identities=26% Similarity=0.782 Sum_probs=24.2
Q ss_pred ccceeeeccccchhhHHHHhhccceeecCCCCCcee
Q 006401 150 KETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 150 ~~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
+...|+.|+.|+... |.++.......|+.|+..|.
T Consensus 22 ~~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 22 PEGVWTKCPKCGQVL-YTKELERNLEVCPKCDHHMR 56 (285)
T ss_pred CCCCeeECCCCcchh-hHHHHHhhCCCCCCCCCcCc
Confidence 345799999999863 33333344468999988765
No 119
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=43.44 E-value=48 Score=23.68 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAP 42 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P 42 (646)
+..+|..+...++++.|..+.++|..+..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999765543
No 120
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=43.17 E-value=7.1 Score=28.70 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=22.8
Q ss_pred ceeeeccccchhhHHHHhhc-cceeecCCCCC
Q 006401 152 TFWTACSRCRLLHQFERKYL-DQILVCPGCKM 182 (646)
Q Consensus 152 tFwt~C~~C~~~yey~r~y~-~~~l~C~~C~~ 182 (646)
.|-..|..|+..++...... +..+.|+.|+.
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred CEEEEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 46667999999877655432 56778999987
No 121
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=43.04 E-value=15 Score=35.75 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=26.7
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
+.|++|+..|.|....- ....||.|+..+.-++
T Consensus 110 Y~Cp~c~~r~tf~eA~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 110 FICPNMCVRFTFNEAME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred EECCCCCcEeeHHHHHH-cCCcCCCCCCEeeecc
Confidence 46999999999887653 5689999999876554
No 122
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.92 E-value=64 Score=37.22 Aligned_cols=51 Identities=25% Similarity=0.194 Sum_probs=41.5
Q ss_pred hhcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHH
Q 006401 5 PEAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFK 55 (646)
Q Consensus 5 ~~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~ 55 (646)
.+..+.|..++....+.|.++.|+.|++++..|-.++|.-+-.-+=.++|-
T Consensus 109 e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY 159 (606)
T KOG0547|consen 109 EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACY 159 (606)
T ss_pred HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHH
Confidence 344678999999999999999999999999999999999544444444444
No 123
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.69 E-value=57 Score=33.75 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=55.7
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCCCCHHHH
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPFSHINTI 81 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~As~~eI 81 (646)
..+..++=...+|.++|..+....|...+.||..|+|++.. .|+..++.+.... .-.||-.||-+.|.- .+.
T Consensus 129 ~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k--Al~RRAeayek~ek~eealeDyKki~E~dPs~--~ea 204 (271)
T KOG4234|consen 129 STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK--ALERRAEAYEKMEKYEEALEDYKKILESDPSR--REA 204 (271)
T ss_pred cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch--HHH
Confidence 34556666777899999999999999999999999999864 3343333332221 235888899888753 355
Q ss_pred HHHHHHh
Q 006401 82 KKQYKKL 88 (646)
Q Consensus 82 KkaYrkl 88 (646)
+++-++|
T Consensus 205 r~~i~rl 211 (271)
T KOG4234|consen 205 REAIARL 211 (271)
T ss_pred HHHHHhc
Confidence 6665554
No 124
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.02 E-value=40 Score=26.03 Aligned_cols=26 Identities=12% Similarity=0.090 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRL 40 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l 40 (646)
+++|..++..||.++|+..+.....-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 47899999999999999999998853
No 125
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=41.20 E-value=18 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=26.7
Q ss_pred eeeeccccchhhHHHHhhccceeecCCCCCceeeeeccC
Q 006401 153 FWTACSRCRLLHQFERKYLDQILVCPGCKMSFEAVEAKE 191 (646)
Q Consensus 153 Fwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e~~~ 191 (646)
.-+.|.+|+..++.. .....++|+.|+.-++-.+-++
T Consensus 5 ~~Y~C~~Cg~~~~~~--~~~~~irCp~Cg~rIl~K~R~~ 41 (49)
T COG1996 5 MEYKCARCGREVELD--QETRGIRCPYCGSRILVKERPK 41 (49)
T ss_pred EEEEhhhcCCeeehh--hccCceeCCCCCcEEEEeccCC
Confidence 346799999987433 3355689999998887766543
No 126
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=39.82 E-value=20 Score=38.55 Aligned_cols=35 Identities=26% Similarity=0.760 Sum_probs=24.1
Q ss_pred ccceeeeccccchhhHHHHhhccceeecCCCCCcee
Q 006401 150 KETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 150 ~~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
+...|+.|+.|+... |.+........|+.|...|.
T Consensus 23 ~~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 23 PEGLWTKCPSCGQVL-YRKELEANLNVCPKCGHHMR 57 (292)
T ss_pred CCCCeeECCCccchh-hHHHHHhcCCCCCCCCCCee
Confidence 455799999999853 33333333458999998774
No 127
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=39.38 E-value=96 Score=28.02 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 7 AEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 7 ~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
.++.|.+++..+-..+.++|+..|.+.+.++.+.-+. +.+.-++++
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~-~~l~~L~AA 100 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN-PLLNYLLAA 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 4667888999999999999999999999999887444 445555544
No 128
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=38.80 E-value=1.3e+02 Score=29.18 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
+-..|+..|+.++|.+|.+.+.....-+|.-
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g 43 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFG 43 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 4445555556666666666666555555553
No 129
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=37.92 E-value=79 Score=22.13 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
|.-+-.+|..++..+++.+|..+++++..+.-.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3445678999999999999999999998876544
No 130
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=37.32 E-value=62 Score=32.75 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhc
Q 006401 73 EPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLS 117 (646)
Q Consensus 73 ~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLs 117 (646)
+++|+.+||.+|+.++..+|--| +..-..|..||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 47899999999999999988444 566777888887653
No 131
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=35.33 E-value=11 Score=28.50 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=20.1
Q ss_pred eccccchhhHHHHhhccceeecCCCCCceee
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFEA 186 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A 186 (646)
.|+.|+... +...+..-.+.|+.|+..+.-
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCGLVLEE 31 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-BBEE-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCCCEeec
Confidence 599999876 444455567899999776543
No 132
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=35.28 E-value=20 Score=38.24 Aligned_cols=35 Identities=26% Similarity=0.777 Sum_probs=25.0
Q ss_pred ccceeeeccccchhhHHHHhhccceeecCCCCCcee
Q 006401 150 KETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 150 ~~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
++..|+-|+.|+.. -|..+.....-.|+.|+..+-
T Consensus 24 ~e~lw~KCp~c~~~-~y~~eL~~n~~vcp~c~~h~r 58 (294)
T COG0777 24 PEGLWTKCPSCGEM-LYRKELESNLKVCPKCGHHMR 58 (294)
T ss_pred CCCceeECCCccce-eeHHHHHhhhhcccccCcccc
Confidence 37889999999975 344444444568999987653
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=34.62 E-value=91 Score=34.08 Aligned_cols=78 Identities=21% Similarity=0.114 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHH--hcCCcChhhhhcCCCCCCH--HHHHHHHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRV--ASKSKEWYQILQVEPFSHI--NTIKKQYK 86 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a--~~~~~d~Y~ILgV~~~As~--~eIKkaYr 86 (646)
+.-+..+|..++..+++..|...+.+|..+.|....+--.+..+-.... ......|-..|.+.|+-.. .-|.+...
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4456778899999999999999999999999987544333332221110 0022345556677665432 23444444
Q ss_pred Hh
Q 006401 87 KL 88 (646)
Q Consensus 87 kl 88 (646)
+|
T Consensus 116 kl 117 (356)
T PLN03088 116 KI 117 (356)
T ss_pred HH
Confidence 44
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=33.77 E-value=76 Score=25.36 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
.+.-+...|..++..+++.+|.+.+.++..+.|+...+..+.
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 344456789999999999999999999999999877655444
No 135
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=33.43 E-value=78 Score=32.37 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=38.5
Q ss_pred ceeccCCCCCCCcCcccccCCCCCCEEEEecCCCCCccceeEEEEEec---------CCcEEEEEee
Q 006401 412 IMAVEDSDFYDFDRDRMERSFKKGQVWAIYDDDDGMPRHYGLIDEVSV---------NPFEVKISWL 469 (646)
Q Consensus 412 ~~~~pd~dF~dFd~~R~~~~F~~gQIWA~Yd~~DgmPR~Ya~I~kV~~---------~~fkl~i~wL 469 (646)
.+.|-.|++++|+. |.-..|..|- +.++.|-+-|||..|.. ..++|+|.|+
T Consensus 12 D~VYv~p~~f~~~~-~~~~~~~~G~------N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 12 DFLYVSPDAFAEEE-RERATFKAGR------NVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred CeEEECcccccccc-cccccccccc------cCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 46788899999986 6677777774 66777777778877721 2589999999
No 136
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=33.01 E-value=2e+02 Score=34.08 Aligned_cols=106 Identities=9% Similarity=0.124 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHH-----------HH---HHhc-CCcChhhhhc--CCCCCC
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFK-----------IL---RVAS-KSKEWYQILQ--VEPFSH 77 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~-----------v~---~a~~-~~~d~Y~ILg--V~~~As 77 (646)
..+|..++..++++.|...+.+|..+.|....+...+..+- .+ .... ....++-.++ +...-.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 34566677888888888888888888888765443332211 10 0000 1111121111 111112
Q ss_pred HHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhh
Q 006401 78 INTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRR 122 (646)
Q Consensus 78 ~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR 122 (646)
.++-.+.|++ ++..+|+..+. .-.++-..+.+|++.+..+.+|
T Consensus 368 ~deA~~~l~~-al~~~P~~~~~-~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 368 TSEAESVFEH-YIQARASHLPQ-SFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHHHHH-HHHhChhhchh-hHHHHHHHHHHHHHhcCCccch
Confidence 3333344433 56667775432 2345667777777777777665
No 137
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.71 E-value=1.3e+02 Score=28.94 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAF 54 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~ 54 (646)
+.+++..|++.+..+|+.-|..++..+...+|....+.++.+.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~a 113 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADA 113 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34677888999999999999999999999999988877777554
No 138
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=1.2e+02 Score=34.00 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHH
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKI 56 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v 56 (646)
..+...+.+++..++|..|+.++++|+++.|....|..-|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445678999999999999999999999999999888877777765
No 139
>PF14369 zf-RING_3: zinc-finger
Probab=32.20 E-value=18 Score=26.65 Aligned_cols=32 Identities=25% Similarity=0.792 Sum_probs=18.7
Q ss_pred ceeeeccccchhhHHHHhhccceeecCCCCCceee
Q 006401 152 TFWTACSRCRLLHQFERKYLDQILVCPGCKMSFEA 186 (646)
Q Consensus 152 tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A 186 (646)
+|| |-.|...-..... ....+.|+.|+..|+-
T Consensus 2 ~yw--Ch~C~~~V~~~~~-~~~~~~CP~C~~gFvE 33 (35)
T PF14369_consen 2 RYW--CHQCNRFVRIAPS-PDSDVACPRCHGGFVE 33 (35)
T ss_pred CEe--CccCCCEeEeCcC-CCCCcCCcCCCCcEeE
Confidence 567 7777754333221 1222359999988873
No 140
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=31.98 E-value=1.5e+02 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=32.8
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHH
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGE 111 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~e 111 (646)
++.-.++|++|-|+..||+.+-++.++++.=-..++....++|..--+
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~ 50 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVA 50 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHH
Confidence 455678999999999999999877777764333333344556654333
No 141
>smart00439 BAH Bromo adjacent homology domain.
Probab=31.22 E-value=1.2e+02 Score=27.03 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=26.6
Q ss_pred CCCCCEEEEecCCCCCccceeEEEEE-ec--CC-cEEEEEeecc
Q 006401 432 FKKGQVWAIYDDDDGMPRHYGLIDEV-SV--NP-FEVKISWLDL 471 (646)
Q Consensus 432 F~~gQIWA~Yd~~DgmPR~Ya~I~kV-~~--~~-fkl~i~wLe~ 471 (646)
|++|+.=-+=.++..-|.+.|+|.+| .. .+ ..+++.|+-.
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~r 45 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYR 45 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC
Confidence 44555433333333579999999999 32 34 6999999965
No 142
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=31.11 E-value=86 Score=29.01 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHhHHhhCCCCCCCCc-----hHHHHHHHHHHHHHhcCc
Q 006401 74 PFSHINTIKKQYKKLALILHPDKNPHSG-----SEEAFKLVGEAFRVLSDK 119 (646)
Q Consensus 74 ~~As~~eIKkaYrklal~~HPDKn~~~~-----a~~~F~~I~eAy~vLsDp 119 (646)
+..+..+++.+.|.+-++.|||...... .++.++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 3456788999999999999999754332 345688888777777654
No 143
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=30.31 E-value=23 Score=38.65 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=25.1
Q ss_pred cceeeeccccchhhHHHHhhccceeecCCCCCcee
Q 006401 151 ETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 151 ~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
-.+-|.|.+|.+.|..... +...-.|+.|+..+.
T Consensus 243 KY~~TAC~rC~t~y~le~A-~~~~wrCpkCGg~ik 276 (403)
T COG1379 243 KYHLTACSRCYTRYSLEEA-KSLRWRCPKCGGKIK 276 (403)
T ss_pred chhHHHHHHhhhccCcchh-hhhcccCcccccchh
Confidence 4567899999999887653 234568999998543
No 144
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=29.27 E-value=45 Score=33.81 Aligned_cols=36 Identities=14% Similarity=0.515 Sum_probs=23.7
Q ss_pred eeeccccchhhHHHHhhc-----cceeecCCCCCceeeeecc
Q 006401 154 WTACSRCRLLHQFERKYL-----DQILVCPGCKMSFEAVEAK 190 (646)
Q Consensus 154 wt~C~~C~~~yey~r~y~-----~~~l~C~~C~~~f~A~e~~ 190 (646)
...|+.|+ ..+.....+ +-.++|.+|+..+.|.-..
T Consensus 6 y~~Cp~Cg-~eev~hEVik~~g~~~lvrC~eCG~V~~~~i~~ 46 (201)
T COG1326 6 YIECPSCG-SEEVSHEVIKERGREPLVRCEECGTVHPAIIKT 46 (201)
T ss_pred EEECCCCC-cchhhHHHHHhcCCceEEEccCCCcEeeceeec
Confidence 45799999 444432222 2367899999999774443
No 145
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=29.14 E-value=10 Score=36.64 Aligned_cols=34 Identities=24% Similarity=0.539 Sum_probs=23.6
Q ss_pred eeccccchhhHHHHhhccc-----eeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQ-----ILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~-----~l~C~~C~~~f~A~e 188 (646)
..|++||..+--.....+. ..+|..|..+|..+.
T Consensus 106 ~~cp~c~s~~t~~~s~fg~t~cka~~~c~~c~epf~~fk 144 (146)
T TIGR02159 106 VQCPRCGSADTTITSIFGPTACKALYRCRACKEPFEYFK 144 (146)
T ss_pred CcCCCCCCCCcEeecCCCChhhHHHhhhhhhCCcHhhcc
Confidence 5799999875543333332 467999999997653
No 146
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=28.59 E-value=28 Score=28.56 Aligned_cols=22 Identities=27% Similarity=0.812 Sum_probs=17.2
Q ss_pred cceeeeccccchhhHHHHhhccc
Q 006401 151 ETFWTACSRCRLLHQFERKYLDQ 173 (646)
Q Consensus 151 ~tFwt~C~~C~~~yey~r~y~~~ 173 (646)
++| ..||+|++.+.+...|..+
T Consensus 15 E~~-lrCPRC~~~FR~~K~Y~RH 36 (65)
T COG4049 15 EEF-LRCPRCGMVFRRRKDYIRH 36 (65)
T ss_pred cee-eeCCchhHHHHHhHHHHHH
Confidence 344 3699999999999988643
No 147
>PRK11827 hypothetical protein; Provisional
Probab=28.28 E-value=22 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=23.6
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
-.|+.|++.-.|... ...|.|..|++.|.-.+
T Consensus 9 LaCP~ckg~L~~~~~--~~~Lic~~~~laYPI~d 40 (60)
T PRK11827 9 IACPVCNGKLWYNQE--KQELICKLDNLAFPLRD 40 (60)
T ss_pred eECCCCCCcCeEcCC--CCeEECCccCeeccccC
Confidence 469999997766542 45788999998886543
No 148
>PF15469 Sec5: Exocyst complex component Sec5
Probab=28.02 E-value=1.4e+02 Score=29.13 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCChH----hHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCC
Q 006401 19 ETKFKNSNLKSALKHAKKAQRLAPSLE----GLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILHP 94 (646)
Q Consensus 19 e~~l~~~d~~gA~r~a~kA~~l~P~l~----~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HP 94 (646)
.+++..+||+.|.+.+.+|+.++-... -+..++..++.+... -....|+.|.-.+ .+.++..+.-+.| +.++|
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~-~r~~l~~~L~~~~-~s~~~~~~~i~~L-l~L~~ 170 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEE-FREKLWEKLLSPP-SSQEEFLKLIRKL-LELNV 170 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CCHHHHHHHHHHH-HhCCC
Confidence 567899999999999999999997763 355566665543321 1235566665444 6777777777555 55577
Q ss_pred CCCC
Q 006401 95 DKNP 98 (646)
Q Consensus 95 DKn~ 98 (646)
+-+|
T Consensus 171 ~~dP 174 (182)
T PF15469_consen 171 EEDP 174 (182)
T ss_pred CCCH
Confidence 6543
No 149
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=27.85 E-value=16 Score=27.65 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=21.9
Q ss_pred ceeeeccccchhhHHHHhhc-cceeecCCCCC
Q 006401 152 TFWTACSRCRLLHQFERKYL-DQILVCPGCKM 182 (646)
Q Consensus 152 tFwt~C~~C~~~yey~r~y~-~~~l~C~~C~~ 182 (646)
.|-..|..|+..++.....- ...+.|+.|+.
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred CEEEEeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 56677888998777655433 35678999887
No 150
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=27.16 E-value=19 Score=28.07 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=22.2
Q ss_pred ceeeeccccchhhHHHHhhc-cceeecCCCCC
Q 006401 152 TFWTACSRCRLLHQFERKYL-DQILVCPGCKM 182 (646)
Q Consensus 152 tFwt~C~~C~~~yey~r~y~-~~~l~C~~C~~ 182 (646)
.|-..|..|+..|+.....- ...+.|+.|+.
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred CEEEEeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 46677999999888664322 34567999987
No 151
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.84 E-value=31 Score=23.82 Aligned_cols=25 Identities=32% Similarity=0.766 Sum_probs=16.0
Q ss_pred eccccchhhHHHHhhccceeecCCCCCceee
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFEA 186 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A 186 (646)
.|+.|+.. .......|+.|+-.|.|
T Consensus 2 ~CP~C~~~------V~~~~~~Cp~CG~~F~~ 26 (26)
T PF10571_consen 2 TCPECGAE------VPESAKFCPHCGYDFEA 26 (26)
T ss_pred cCCCCcCC------chhhcCcCCCCCCCCcC
Confidence 37777764 22334578888887764
No 152
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=26.84 E-value=70 Score=27.82 Aligned_cols=25 Identities=12% Similarity=0.365 Sum_probs=21.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC
Q 006401 17 IAETKFKNSNLKSALKHAKKAQRLA 41 (646)
Q Consensus 17 iAe~~l~~~d~~gA~r~a~kA~~l~ 41 (646)
.++.+++.||+++|++...+|+.+.
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHH
Confidence 4678899999999999999998764
No 153
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=26.21 E-value=1.6e+02 Score=26.24 Aligned_cols=43 Identities=14% Similarity=-0.007 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHH
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAF 54 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~ 54 (646)
.-+..+|..++..+++..|...+.++..+.|......-.+..+
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3455678888888999999999999988888865444444433
No 154
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=26.11 E-value=30 Score=32.78 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=27.2
Q ss_pred cceeeeccccchhhHHHHhhccceeecCCCCCceeee
Q 006401 151 ETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFEAV 187 (646)
Q Consensus 151 ~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~ 187 (646)
..|+..|..|+..+...+..-.....|..|+..|.-+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 5789999999987655444433457899999887643
No 155
>PF14435 SUKH-4: SUKH-4 immunity protein
Probab=25.84 E-value=82 Score=30.60 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCceeee-eeEEeCce-----eeecc-------CCceEEEEEEEEcC-CceEEEeCCCCcEeEEecCC
Q 006401 485 QGFHVSC-GRFKVSRK-----TSIDS-------LNIFSHIVECERAA-REVYRIFPTKGSVWALYNEA 538 (646)
Q Consensus 485 ~~~pv~C-G~F~~~~~-----~~~~~-------~~~FSH~v~~~~~~-~~~~~IyPrkGevWAlyk~W 538 (646)
-|||..+ .-|..... ..+.. ...+.|.+.--... .+.+.|.|.+|+||++.-+.
T Consensus 38 ~GlP~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vlG~~~~~~~i~ld~~tG~V~~~~~~~ 105 (179)
T PF14435_consen 38 VGLPEDPPPFFRFDPEDDDPLPTLAEAFDEEGLPPDAGHYIVLGSDGSGGSICLDPATGAVYALDPDE 105 (179)
T ss_pred cCCCCCccceeeccCccccccCcHHHHhccccCccccCccEEEEEcCCCCeEEEECCCCeEEEecCCc
Confidence 3899999 66766542 11222 44577776665544 78999999999999987644
No 156
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=25.76 E-value=1.4e+02 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006401 5 PEAEREASRLKGIAETKFKNSNLKSALKHAKKAQRL 40 (646)
Q Consensus 5 ~~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l 40 (646)
|..-.+|...+..|+..+..++|..|..++..|+..
T Consensus 39 p~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 39 PVELKEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999876
No 157
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=25.73 E-value=1.2e+02 Score=26.70 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=29.6
Q ss_pred CCCCCCEEEEecCCC--CCccceeEEEEEec---CCcEEEEEeecc
Q 006401 431 SFKKGQVWAIYDDDD--GMPRHYGLIDEVSV---NPFEVKISWLDL 471 (646)
Q Consensus 431 ~F~~gQIWA~Yd~~D--gmPR~Ya~I~kV~~---~~fkl~i~wLe~ 471 (646)
.|.+||.=.+-.+.+ .-|.+.|+|.++.. ....|++.|+-.
T Consensus 3 ~y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~r 48 (123)
T cd04370 3 TYEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYR 48 (123)
T ss_pred EEecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEc
Confidence 356777544554433 57999999999933 348999999976
No 158
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=25.68 E-value=29 Score=24.86 Aligned_cols=24 Identities=29% Similarity=0.701 Sum_probs=13.0
Q ss_pred eccccchhhHHHHhhccceeecCCCCC
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKM 182 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~ 182 (646)
.|+.|+.-|.| .-+..+.|+.|..
T Consensus 4 ~Cp~C~se~~y---~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY---EDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----E---E-SSSEEETTTTE
T ss_pred CCCCCCCccee---ccCCEEeCCcccc
Confidence 48999999888 3367789999975
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=25.57 E-value=1.9e+02 Score=22.05 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
+..+|..++..+++..|...+.++.++.|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 45678888999999999999999999999875
No 160
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.48 E-value=28 Score=32.07 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=18.7
Q ss_pred eeccccchhhHHHHhhcc-ceeecCCCCCceeee
Q 006401 155 TACSRCRLLHQFERKYLD-QILVCPGCKMSFEAV 187 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~-~~l~C~~C~~~f~A~ 187 (646)
..|+.||..|-= || .-+.||.|+..|...
T Consensus 10 R~Cp~CG~kFYD----Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYD----LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhcc----CCCCCccCCCCCCccCcc
Confidence 468888885321 22 246788888877765
No 161
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=24.01 E-value=2.6e+02 Score=26.20 Aligned_cols=37 Identities=16% Similarity=-0.013 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..+...+++.+|...+.+|..+.|.....
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a 94 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP 94 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 4455778888889999999999999999999987543
No 162
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=23.52 E-value=2.1e+02 Score=28.52 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+..|..+|..++..+++..|...+.+|.++.|....+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~ 110 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELY 110 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 44577888899999999999999999999999976543
No 163
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.88 E-value=4.8e+02 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
......+|..++..+++++|...++...+..+..
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3455678999999999999999999999999887
No 164
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=22.87 E-value=2.6e+02 Score=24.91 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVT 52 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~ 52 (646)
+.....+|..++..+++..|...+.++..++|....+...+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 58 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLA 58 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 344677889999999999999999999999998755443333
No 165
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=22.82 E-value=1.7e+02 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.++|.++..+++.+|...+-+|..+||....+-+++
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6688999999999999999999999999986544333
No 166
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=22.27 E-value=1.4e+02 Score=24.21 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLA 41 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~ 41 (646)
+-|.-+..+|..+...++++.|..++++|..++
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 347777889999999999999999999998764
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=22.20 E-value=1.9e+02 Score=30.85 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhC
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILH 93 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~H 93 (646)
+-..|...|..++|++|...+..|...+|.... .|...-++ +..+|-+ .+.-..|....+..|
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d---~LaNliv~---------~~~~gk~-----~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD---TLANLIVC---------SLHLGKP-----TEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH---HHHHHHHH---------HHHTT-T-----CHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH---HHHHHHHH---------HHHhCCC-----hhHHHHHHHHHHHhC
Confidence 456889999999999999999999999998754 23222221 2233322 234457777788889
Q ss_pred CCC
Q 006401 94 PDK 96 (646)
Q Consensus 94 PDK 96 (646)
|++
T Consensus 267 p~h 269 (290)
T PF04733_consen 267 PNH 269 (290)
T ss_dssp TTS
T ss_pred CCC
Confidence 985
No 168
>PRK05685 fliS flagellar protein FliS; Validated
Probab=22.09 E-value=1.6e+02 Score=27.72 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
|.|++.+..|...+..+|++.+...+.||+.+.-.|
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999876444
No 169
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=21.77 E-value=5.2e+02 Score=25.47 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
..+|..++..+++..|...+.++...+|..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 3678889999999999999999999999754
No 170
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=21.76 E-value=45 Score=25.72 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=18.3
Q ss_pred eccccchhhHHHHhhccceeecCCCCCcee
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
.|+.||.+-.....-.+..+.|+.|+-.+.
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEE
Confidence 488998854332211124678999996543
No 171
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=21.55 E-value=1.1e+02 Score=20.27 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAK 35 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~ 35 (646)
...+|..++..||+++|++.+.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4567899999999999998875
No 172
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=21.49 E-value=68 Score=24.80 Aligned_cols=32 Identities=13% Similarity=0.388 Sum_probs=23.7
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeeec
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVEA 189 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e~ 189 (646)
+.|..||...+.. ....+.|+.|+.-.+-.+-
T Consensus 3 Y~C~~Cg~~~~~~---~~~~irC~~CG~rIlyK~R 34 (44)
T smart00659 3 YICGECGRENEIK---SKDVVRCRECGYRILYKKR 34 (44)
T ss_pred EECCCCCCEeecC---CCCceECCCCCceEEEEeC
Confidence 5699999976654 3567899999987775543
No 173
>PRK05978 hypothetical protein; Provisional
Probab=21.18 E-value=37 Score=32.99 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=28.5
Q ss_pred ceeeeccccchhhHHHHhhccceeecCCCCCceeeeec
Q 006401 152 TFWTACSRCRLLHQFERKYLDQILVCPGCKMSFEAVEA 189 (646)
Q Consensus 152 tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e~ 189 (646)
.+...|++|+.-.-|. .|+.-.-.|+.|+..|...+.
T Consensus 31 Gl~grCP~CG~G~LF~-g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 31 GFRGRCPACGEGKLFR-AFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred HHcCcCCCCCCCcccc-cccccCCCccccCCccccCCc
Confidence 3445799999866664 677778899999999887644
No 174
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.09 E-value=57 Score=31.15 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=25.1
Q ss_pred eeccccchh-hHHHHhhccceeecCCCCCceeeeeccCC
Q 006401 155 TACSRCRLL-HQFERKYLDQILVCPGCKMSFEAVEAKES 192 (646)
Q Consensus 155 t~C~~C~~~-yey~r~y~~~~l~C~~C~~~f~A~e~~~~ 192 (646)
..|+.||+. |+ .+-.+.||.|...+.-++.+..
T Consensus 29 ~hCp~Cg~PLF~-----KdG~v~CPvC~~~~~~v~~e~~ 62 (131)
T COG1645 29 KHCPKCGTPLFR-----KDGEVFCPVCGYREVVVEEEEE 62 (131)
T ss_pred hhCcccCCccee-----eCCeEECCCCCceEEEeecccc
Confidence 459999984 22 3456899999988888887755
No 175
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=20.63 E-value=1.8e+02 Score=27.12 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
|.|++.+..|...+..+|+..+...+.||+.+.-.|
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL 64 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQEL 64 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999876444
No 176
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.21 E-value=3e+02 Score=24.02 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=33.3
Q ss_pred ChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHH
Q 006401 65 EWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKL 108 (646)
Q Consensus 65 d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~ 108 (646)
+--.+.|+.|-|+.+||+.+-.+.+++..=-..++....++|..
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 44456789999999999999988888886665555555666654
No 177
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=20.21 E-value=5.6e+02 Score=31.02 Aligned_cols=111 Identities=10% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH--------------HHHHH-HHHhcCCcChhhhhcCC--
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV--------------TAFKI-LRVASKSKEWYQILQVE-- 73 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll--------------~~~~v-~~a~~~~~d~Y~ILgV~-- 73 (646)
+.-.+-+|+..++.+.+++|.+.+..+..++|....+.-.+ ..++- +.......+.+-.|+.-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 34445578888899999999999999999999976532211 11111 11111223333333321
Q ss_pred CCCCHHHHHHHHHHhHHhhCCCCCCC-----------CchHHHHHHHHHHHHHhcCchhh
Q 006401 74 PFSHINTIKKQYKKLALILHPDKNPH-----------SGSEEAFKLVGEAFRVLSDKVRR 122 (646)
Q Consensus 74 ~~As~~eIKkaYrklal~~HPDKn~~-----------~~a~~~F~~I~eAy~vLsDp~kR 122 (646)
.---.++--..|++++. -|||--.. ...+++...+.+|.+..++-.|.
T Consensus 166 ~~g~~~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 166 EIGQSEQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HhcchHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 22244566678999888 89983211 01456677777787877877643
No 178
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=20.02 E-value=53 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=27.0
Q ss_pred cceeeeccccchhhHHHHhhcc-ceeecCCCCCceee
Q 006401 151 ETFWTACSRCRLLHQFERKYLD-QILVCPGCKMSFEA 186 (646)
Q Consensus 151 ~tFwt~C~~C~~~yey~r~y~~-~~l~C~~C~~~f~A 186 (646)
..|...|..|+..+...+...+ ...+|..|+..|.-
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~~ 145 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLIL 145 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEEe
Confidence 3788899889988765554444 66899999988763
Done!