Query 006401
Match_columns 646
No_of_seqs 409 out of 2686
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 99.9 1.1E-23 3.7E-28 200.3 9.1 126 62-189 8-148 (155)
2 1hdj_A Human HSP40, HDJ-1; mol 99.7 4.2E-18 1.4E-22 143.4 8.5 69 64-132 3-71 (77)
3 2ctp_A DNAJ homolog subfamily 99.7 5E-18 1.7E-22 143.2 6.5 69 62-130 5-73 (78)
4 2cug_A Mkiaa0962 protein; DNAJ 99.7 1.3E-17 4.5E-22 144.1 8.1 69 62-130 15-83 (88)
5 2ctr_A DNAJ homolog subfamily 99.7 1.5E-17 5.2E-22 143.7 8.5 73 62-134 5-77 (88)
6 2dn9_A DNAJ homolog subfamily 99.7 1.5E-17 5.1E-22 140.6 7.5 69 62-130 5-74 (79)
7 1wjz_A 1700030A21RIK protein; 99.7 1.2E-17 4.1E-22 145.5 6.6 69 62-130 14-89 (94)
8 2ej7_A HCG3 gene; HCG3 protein 99.7 1.8E-17 6.1E-22 141.1 7.5 69 62-130 7-77 (82)
9 2ctq_A DNAJ homolog subfamily 99.7 3.3E-17 1.1E-21 147.9 8.6 72 62-133 18-90 (112)
10 2och_A Hypothetical protein DN 99.7 3.9E-17 1.3E-21 136.1 8.0 66 62-129 6-71 (73)
11 2yua_A Williams-beuren syndrom 99.7 3.2E-17 1.1E-21 144.8 7.2 69 62-130 15-84 (99)
12 2lgw_A DNAJ homolog subfamily 99.7 6.5E-17 2.2E-21 143.1 8.2 72 64-135 2-75 (99)
13 2dmx_A DNAJ homolog subfamily 99.7 7.4E-17 2.5E-21 140.3 7.9 71 62-132 7-79 (92)
14 2o37_A Protein SIS1; HSP40, J- 99.7 1.5E-16 5.1E-21 138.7 8.6 72 62-135 6-77 (92)
15 2ctw_A DNAJ homolog subfamily 99.6 1.4E-16 4.7E-21 143.2 7.2 73 62-134 15-88 (109)
16 2ys8_A RAB-related GTP-binding 99.6 2E-16 7E-21 137.4 7.3 63 62-124 25-87 (90)
17 1bq0_A DNAJ, HSP40; chaperone, 99.6 6.3E-17 2.2E-21 143.8 3.7 71 63-133 2-73 (103)
18 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 1.8E-16 6E-21 142.2 5.7 69 62-130 13-86 (109)
19 3apq_A DNAJ homolog subfamily 99.6 1.9E-15 6.4E-20 148.1 7.5 70 64-133 2-72 (210)
20 3hho_A CO-chaperone protein HS 99.5 3.9E-15 1.3E-19 144.3 7.2 68 63-130 3-78 (174)
21 3ag7_A Putative uncharacterize 99.5 9.4E-16 3.2E-20 137.3 1.5 85 33-120 11-104 (106)
22 1fpo_A HSC20, chaperone protei 99.5 4.9E-15 1.7E-19 143.3 6.3 67 64-130 1-75 (171)
23 1gh6_A Large T antigen; tumor 99.5 2.1E-15 7.3E-20 136.7 0.6 62 64-128 8-71 (114)
24 2qwo_B Putative tyrosine-prote 99.5 2.9E-15 1E-19 130.8 1.3 72 45-118 16-91 (92)
25 3lz8_A Putative chaperone DNAJ 99.5 2E-15 6.9E-20 159.8 0.0 69 62-130 26-94 (329)
26 3bvo_A CO-chaperone protein HS 99.5 2.1E-14 7.1E-19 142.9 7.1 69 62-130 41-117 (207)
27 1n4c_A Auxilin; four helix bun 99.5 4.1E-15 1.4E-19 144.9 0.9 78 46-125 101-182 (182)
28 1faf_A Large T antigen; J doma 99.5 1.3E-14 4.5E-19 123.1 3.5 60 64-126 11-72 (79)
29 1iur_A KIAA0730 protein; DNAJ 99.5 2.3E-14 7.8E-19 124.3 4.0 60 63-122 15-76 (88)
30 2pf4_E Small T antigen; PP2A, 99.5 6.6E-15 2.3E-19 142.5 0.6 64 64-130 11-76 (174)
31 3uo3_A J-type CO-chaperone JAC 99.4 5E-14 1.7E-18 137.4 4.4 66 62-129 9-81 (181)
32 2guz_A Mitochondrial import in 99.4 1.4E-13 4.7E-18 114.5 3.5 56 64-122 14-70 (71)
33 2y4t_A DNAJ homolog subfamily 99.4 1.7E-12 5.8E-17 136.0 11.0 116 12-127 330-449 (450)
34 3apo_A DNAJ homolog subfamily 99.3 5.8E-13 2E-17 154.3 1.1 72 62-133 19-91 (780)
35 2guz_B Mitochondrial import in 98.2 7.5E-07 2.6E-11 72.8 4.7 51 65-118 5-58 (65)
36 2pzi_A Probable serine/threoni 95.0 0.026 8.8E-07 64.3 6.7 48 61-115 626-675 (681)
37 2jr7_A DPH3 homolog; DESR1, CS 87.0 0.23 8E-06 42.8 1.8 35 151-186 20-57 (89)
38 1yop_A KTI11P; zinc finger, me 85.6 0.26 8.8E-06 42.0 1.3 35 151-186 20-57 (83)
39 1wge_A Hypothetical protein 26 84.8 0.34 1.2E-05 41.2 1.7 36 150-186 26-64 (83)
40 3upv_A Heat shock protein STI1 84.0 2.3 7.8E-05 35.8 6.7 40 9-48 2-41 (126)
41 2l6j_A TPR repeat-containing p 81.0 6.1 0.00021 31.7 8.0 38 10-47 3-40 (111)
42 4gcn_A Protein STI-1; structur 76.4 6.4 0.00022 33.9 7.2 40 7-46 4-43 (127)
43 4gco_A Protein STI-1; structur 69.4 11 0.00039 32.4 7.0 40 9-48 11-50 (126)
44 3sz7_A HSC70 cochaperone (SGT) 67.5 62 0.0021 28.1 11.8 90 6-119 6-95 (164)
45 4ga2_A E3 SUMO-protein ligase 66.4 9 0.00031 33.9 5.9 47 7-53 27-73 (150)
46 2kc7_A BFR218_protein; tetratr 66.4 16 0.00055 28.9 6.9 32 15-46 4-35 (99)
47 4gco_A Protein STI-1; structur 65.2 14 0.00047 31.8 6.7 64 11-76 47-114 (126)
48 1a17_A Serine/threonine protei 63.6 21 0.00071 30.5 7.6 41 6-46 8-48 (166)
49 2kat_A Uncharacterized protein 63.2 6.2 0.00021 32.6 3.9 38 11-48 19-56 (115)
50 3rkv_A Putative peptidylprolyl 62.5 57 0.002 28.3 10.5 35 6-40 6-40 (162)
51 1elw_A TPR1-domain of HOP; HOP 61.8 17 0.00057 28.8 6.2 37 10-46 3-39 (118)
52 3sz7_A HSC70 cochaperone (SGT) 59.8 14 0.00049 32.4 6.0 36 11-46 45-80 (164)
53 3ma5_A Tetratricopeptide repea 59.8 20 0.00067 29.2 6.4 41 11-51 7-47 (100)
54 1na3_A Designed protein CTPR2; 59.4 25 0.00084 26.8 6.7 38 10-47 8-45 (91)
55 3rkv_A Putative peptidylprolyl 59.3 24 0.00081 30.9 7.3 65 9-75 61-129 (162)
56 1na3_A Designed protein CTPR2; 58.8 29 0.001 26.4 7.0 40 13-52 45-84 (91)
57 1elr_A TPR2A-domain of HOP; HO 57.5 71 0.0024 25.4 11.1 39 9-47 2-40 (131)
58 3vtx_A MAMA; tetratricopeptide 55.8 17 0.00058 32.2 5.8 37 11-47 5-41 (184)
59 2xev_A YBGF; tetratricopeptide 55.1 33 0.0011 28.1 7.2 34 12-45 40-73 (129)
60 3q49_B STIP1 homology and U bo 54.7 28 0.00095 28.9 6.7 39 10-48 8-46 (137)
61 3k9i_A BH0479 protein; putativ 53.0 34 0.0012 28.2 6.9 43 9-51 25-67 (117)
62 2dba_A Smooth muscle cell asso 52.7 29 0.00099 28.9 6.5 38 10-47 64-101 (148)
63 3upv_A Heat shock protein STI1 52.5 27 0.00092 28.9 6.2 42 11-52 38-79 (126)
64 2vyi_A SGTA protein; chaperone 52.2 40 0.0014 26.9 7.1 41 6-46 7-47 (131)
65 2xcb_A PCRH, regulatory protei 50.8 37 0.0013 29.1 7.0 40 9-48 16-55 (142)
66 1elw_A TPR1-domain of HOP; HOP 50.1 39 0.0013 26.5 6.6 38 11-48 38-75 (118)
67 4ga2_A E3 SUMO-protein ligase 49.5 1E+02 0.0035 26.8 9.9 37 11-47 65-101 (150)
68 1ihg_A Cyclophilin 40; ppiase 48.4 41 0.0014 34.9 8.0 38 6-43 218-255 (370)
69 3qky_A Outer membrane assembly 48.1 1.1E+02 0.0039 28.6 10.6 32 14-45 151-182 (261)
70 2hr2_A Hypothetical protein; a 47.9 18 0.0006 34.0 4.6 39 6-44 6-44 (159)
71 2if4_A ATFKBP42; FKBP-like, al 47.4 11 0.00037 38.5 3.3 33 14-46 233-265 (338)
72 1hxi_A PEX5, peroxisome target 46.6 36 0.0012 28.8 6.1 41 13-53 19-59 (121)
73 2fbn_A 70 kDa peptidylprolyl i 45.6 1.7E+02 0.0057 26.2 12.4 40 6-45 33-72 (198)
74 3gyz_A Chaperone protein IPGC; 45.6 47 0.0016 29.8 7.0 43 9-51 34-76 (151)
75 2kck_A TPR repeat; tetratricop 44.7 54 0.0019 25.4 6.6 34 14-47 9-42 (112)
76 2kc7_A BFR218_protein; tetratr 44.5 46 0.0016 26.1 6.1 35 13-47 37-71 (99)
77 1hxi_A PEX5, peroxisome target 44.5 49 0.0017 27.9 6.7 37 12-48 52-88 (121)
78 2fbn_A 70 kDa peptidylprolyl i 43.3 54 0.0018 29.6 7.2 37 11-47 88-124 (198)
79 2lni_A Stress-induced-phosphop 43.3 39 0.0013 27.3 5.7 37 10-46 15-51 (133)
80 2vyi_A SGTA protein; chaperone 43.1 57 0.0019 26.0 6.6 37 11-47 46-82 (131)
81 2lni_A Stress-induced-phosphop 43.0 45 0.0015 27.0 6.0 41 11-51 50-90 (133)
82 2l6j_A TPR repeat-containing p 42.4 54 0.0019 25.8 6.3 33 12-44 39-71 (111)
83 3eyi_A Z-DNA-binding protein 1 42.3 10 0.00035 31.2 1.6 14 525-539 57-70 (72)
84 2vgx_A Chaperone SYCD; alterna 41.6 40 0.0014 29.6 5.8 39 11-49 55-93 (148)
85 2e2e_A Formate-dependent nitri 41.5 56 0.0019 28.6 6.8 42 11-52 78-122 (177)
86 1na0_A Designed protein CTPR3; 41.2 66 0.0023 25.3 6.7 36 11-46 43-78 (125)
87 1p5q_A FKBP52, FK506-binding p 40.8 1.2E+02 0.0041 30.5 10.0 37 8-44 144-180 (336)
88 1kt0_A FKBP51, 51 kDa FK506-bi 40.8 50 0.0017 35.0 7.4 37 8-44 265-301 (457)
89 1na0_A Designed protein CTPR3; 40.6 73 0.0025 25.0 6.8 36 11-46 9-44 (125)
90 2c2l_A CHIP, carboxy terminus 40.5 1.8E+02 0.0062 28.2 11.0 37 11-47 4-40 (281)
91 3mkr_A Coatomer subunit epsilo 40.2 56 0.0019 32.3 7.2 31 16-46 205-235 (291)
92 3gyz_A Chaperone protein IPGC; 40.1 34 0.0012 30.8 5.2 37 11-47 70-106 (151)
93 2xcb_A PCRH, regulatory protei 40.0 36 0.0012 29.2 5.1 38 11-48 52-89 (142)
94 2vgx_A Chaperone SYCD; alterna 38.7 72 0.0024 27.9 7.0 39 9-47 19-57 (148)
95 3q49_B STIP1 homology and U bo 38.2 72 0.0025 26.2 6.7 35 12-46 44-78 (137)
96 3k9i_A BH0479 protein; putativ 38.2 58 0.002 26.7 6.0 43 14-56 64-106 (117)
97 3ax2_A Mitochondrial import re 37.8 60 0.002 26.7 5.7 37 15-51 21-57 (73)
98 1elr_A TPR2A-domain of HOP; HO 37.4 1.1E+02 0.0039 24.2 7.6 44 11-55 79-122 (131)
99 3mv2_A Coatomer subunit alpha; 37.2 1.1E+02 0.0037 32.1 8.9 160 15-189 118-318 (325)
100 2xev_A YBGF; tetratricopeptide 37.0 80 0.0027 25.6 6.7 32 14-45 5-36 (129)
101 1a17_A Serine/threonine protei 36.8 98 0.0033 26.0 7.4 37 11-47 47-83 (166)
102 3u4t_A TPR repeat-containing p 36.5 48 0.0017 30.8 5.8 45 12-56 222-266 (272)
103 2hf1_A Tetraacyldisaccharide-1 36.3 7 0.00024 31.8 -0.2 32 155-188 9-40 (68)
104 2v5f_A Prolyl 4-hydroxylase su 35.6 1.2E+02 0.004 25.0 7.5 40 14-53 49-88 (104)
105 3ieg_A DNAJ homolog subfamily 35.4 67 0.0023 30.8 6.8 73 14-88 275-353 (359)
106 2js4_A UPF0434 protein BB2007; 35.1 7.3 0.00025 31.9 -0.2 31 156-188 10-40 (70)
107 1ihg_A Cyclophilin 40; ppiase 34.6 78 0.0027 32.7 7.6 65 9-75 271-339 (370)
108 3ieg_A DNAJ homolog subfamily 34.6 3E+02 0.01 26.0 12.3 39 10-48 2-40 (359)
109 1hh8_A P67PHOX, NCF-2, neutrop 34.3 1.1E+02 0.0037 27.3 7.7 35 12-46 38-72 (213)
110 2kck_A TPR repeat; tetratricop 34.2 49 0.0017 25.7 4.7 31 13-43 42-72 (112)
111 3qou_A Protein YBBN; thioredox 34.2 70 0.0024 31.3 6.8 43 11-53 117-159 (287)
112 2pk7_A Uncharacterized protein 34.1 7.9 0.00027 31.6 -0.2 31 156-188 10-40 (69)
113 4gcn_A Protein STI-1; structur 33.0 77 0.0026 26.8 6.1 34 13-46 85-118 (127)
114 2gw1_A Mitochondrial precursor 32.1 79 0.0027 32.3 7.0 39 7-45 2-40 (514)
115 1pc2_A Mitochondria fission pr 31.2 1.5E+02 0.0052 27.4 8.1 50 7-58 69-118 (152)
116 3uq3_A Heat shock protein STI1 31.2 2.9E+02 0.0099 24.8 10.4 34 8-41 2-35 (258)
117 2yhc_A BAMD, UPF0169 lipoprote 30.6 3.2E+02 0.011 25.0 12.1 31 15-45 45-75 (225)
118 3qky_A Outer membrane assembly 30.6 3.3E+02 0.011 25.2 11.5 35 10-44 14-48 (261)
119 2jny_A Uncharacterized BCR; st 30.5 9.9 0.00034 30.9 -0.2 32 155-188 11-42 (67)
120 1p5q_A FKBP52, FK506-binding p 30.3 80 0.0027 31.8 6.6 64 11-76 196-263 (336)
121 2dba_A Smooth muscle cell asso 30.3 2.2E+02 0.0076 23.1 12.2 37 9-45 26-62 (148)
122 1om2_A Protein (mitochondrial 30.0 64 0.0022 27.9 4.8 37 15-51 24-60 (95)
123 2jr6_A UPF0434 protein NMA0874 29.9 11 0.00036 30.8 -0.1 31 156-188 10-40 (68)
124 3fp2_A TPR repeat-containing p 29.2 2.1E+02 0.0072 29.4 9.8 43 6-48 20-62 (537)
125 2lcq_A Putative toxin VAPC6; P 27.7 24 0.00081 32.8 1.9 34 148-185 126-159 (165)
126 1wao_1 Serine/threonine protei 27.7 4.5E+02 0.016 27.8 12.4 32 13-44 42-73 (477)
127 2fo7_A Synthetic consensus TPR 27.5 99 0.0034 24.4 5.6 32 14-45 4-35 (136)
128 3qou_A Protein YBBN; thioredox 27.5 1.7E+02 0.0058 28.4 8.3 31 14-44 222-252 (287)
129 3bee_A Putative YFRE protein; 27.1 1.1E+02 0.0037 25.2 5.8 77 11-87 6-88 (93)
130 3vtx_A MAMA; tetratricopeptide 27.1 1.3E+02 0.0043 26.3 6.7 39 13-51 75-113 (184)
131 2kat_A Uncharacterized protein 27.0 70 0.0024 25.9 4.6 33 12-44 54-86 (115)
132 2e2e_A Formate-dependent nitri 26.3 1E+02 0.0036 26.8 5.9 37 11-47 44-80 (177)
133 3urz_A Uncharacterized protein 26.3 80 0.0027 29.0 5.3 36 11-46 4-39 (208)
134 3iqc_A FLIS, flagellar protein 25.8 85 0.0029 28.4 5.2 36 9-44 34-69 (131)
135 4a5x_A MITD1, MIT domain-conta 25.6 85 0.0029 26.3 4.8 37 1-40 9-45 (86)
136 3ma5_A Tetratricopeptide repea 25.5 72 0.0025 25.7 4.3 33 13-45 43-75 (100)
137 2vq2_A PILW, putative fimbrial 25.0 1.6E+02 0.0055 25.9 7.0 38 9-46 6-43 (225)
138 2v5f_A Prolyl 4-hydroxylase su 24.8 1.3E+02 0.0046 24.6 6.0 31 11-41 5-35 (104)
139 3urz_A Uncharacterized protein 24.7 1.5E+02 0.0052 27.0 7.0 31 17-47 60-90 (208)
140 2pl2_A Hypothetical conserved 24.5 1.4E+02 0.0047 27.5 6.7 30 15-44 9-38 (217)
141 2pl2_A Hypothetical conserved 24.4 1.2E+02 0.0042 27.9 6.3 31 11-41 118-148 (217)
142 2rkl_A Vacuolar protein sortin 24.3 52 0.0018 25.6 2.9 38 3-40 12-49 (53)
143 1kt0_A FKBP51, 51 kDa FK506-bi 24.0 1.1E+02 0.0038 32.3 6.6 63 11-75 317-383 (457)
144 1vh6_A Flagellar protein FLIS; 23.6 96 0.0033 28.5 5.2 33 9-41 31-63 (145)
145 1fch_A Peroxisomal targeting s 23.6 4.9E+02 0.017 24.9 11.4 36 11-46 217-252 (368)
146 1pft_A TFIIB, PFTFIIBN; N-term 22.8 20 0.00069 26.8 0.3 33 156-190 7-40 (50)
147 2fo7_A Synthetic consensus TPR 22.5 1.9E+02 0.0064 22.6 6.4 34 13-46 37-70 (136)
148 1qqe_A Vesicular transport pro 22.3 1.9E+02 0.0063 28.0 7.4 34 11-44 77-110 (292)
149 4eqf_A PEX5-related protein; a 22.3 5.1E+02 0.018 25.0 10.8 85 11-119 65-149 (365)
150 2ff4_A Probable regulatory pro 21.6 2.9E+02 0.01 28.7 9.2 73 15-90 175-256 (388)
151 1nzn_A CGI-135 protein, fissio 21.6 2E+02 0.0067 25.9 6.7 50 5-56 70-119 (126)
152 4ayb_P DNA-directed RNA polyme 21.0 20 0.0007 27.2 0.0 34 155-188 4-37 (48)
153 4gyw_A UDP-N-acetylglucosamine 21.0 5.5E+02 0.019 29.2 12.0 38 10-47 8-45 (723)
154 3na7_A HP0958; flagellar bioge 20.9 91 0.0031 31.0 4.8 58 118-187 174-235 (256)
155 1xnf_A Lipoprotein NLPI; TPR, 20.7 2.1E+02 0.0071 26.2 7.1 39 9-47 41-79 (275)
156 2r5s_A Uncharacterized protein 20.5 58 0.002 28.9 3.0 41 14-54 9-49 (176)
157 3ro3_A PINS homolog, G-protein 20.5 1.4E+02 0.0047 24.4 5.3 38 8-45 6-43 (164)
158 4i17_A Hypothetical protein; T 20.0 1.6E+02 0.0056 26.6 6.1 41 14-54 45-85 (228)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=200.31 Aligned_cols=126 Identities=25% Similarity=0.560 Sum_probs=102.5
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc-------hHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG-------SEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQ 134 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~-------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 134 (646)
...|||+||||+++|+.++||++||+|++++||||++... +.+.|+.|++||++|+||.+|+.||..+.....
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~ 87 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDL 87 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhc
Confidence 4679999999999999999999999999999999998764 568999999999999999999999988864322
Q ss_pred cc------ccccCCCCCCCCCccceeeeccccchhhHHHHhhcc--ceeecCCCCCceeeeec
Q 006401 135 DE------KVALDDNDDGFAGKETFWTACSRCRLLHQFERKYLD--QILVCPGCKMSFEAVEA 189 (646)
Q Consensus 135 ~~------~~~~~~~~~~~~~~~tFwt~C~~C~~~yey~r~y~~--~~l~C~~C~~~f~A~e~ 189 (646)
.. .+.++.... .....+||+.| +||+.|+|.+..++ ..+.|++|++.|.++-.
T Consensus 88 ~~~~~~~~~~~~~~m~~-~e~~~~f~~~C-rCG~~f~i~~~~l~~~~~v~C~sCSl~~~v~~~ 148 (155)
T 2l6l_A 88 RNVGPVDAQVYLEEMSW-NEGDHSFYLSC-RCGGKYSVSKDEAEEVSLISCDTCSLIIELLHY 148 (155)
T ss_dssp HTTCSSSEEEETTTSEE-ETTTTEEEEEC-SSSCEEEEETTHHHHCCEEECSSSSCEEEEECC
T ss_pred cccccccceeeHHHhcc-ccCCcEEEEcC-CCCCeEEecHHHhCCCCEEECCCCceEEEEEEc
Confidence 21 111111111 12346899999 59999999998887 78999999999988643
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=4.2e-18 Score=143.39 Aligned_cols=69 Identities=39% Similarity=0.579 Sum_probs=65.4
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
.|||+||||+++|+.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 699999999999999999999999999999999998889999999999999999999999999876543
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=143.24 Aligned_cols=69 Identities=43% Similarity=0.680 Sum_probs=65.3
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||++||+|++++|||++..+++.+.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 467999999999999999999999999999999999888899999999999999999999999997664
No 4
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=144.07 Aligned_cols=69 Identities=36% Similarity=0.539 Sum_probs=65.7
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 467999999999999999999999999999999999988899999999999999999999999998764
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=143.69 Aligned_cols=73 Identities=40% Similarity=0.575 Sum_probs=67.7
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQ 134 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 134 (646)
...|||+||||+++|+.++||++||+|++++|||+++.+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 4579999999999999999999999999999999998777899999999999999999999999988765543
No 6
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=140.56 Aligned_cols=69 Identities=42% Similarity=0.611 Sum_probs=64.0
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 46799999999999999999999999999999999874 5688999999999999999999999997653
No 7
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.70 E-value=1.2e-17 Score=145.52 Aligned_cols=69 Identities=30% Similarity=0.698 Sum_probs=63.6
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-------CchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-------SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-------~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||..+.
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 46799999999999999999999999999999999874 2477899999999999999999999998775
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=141.05 Aligned_cols=69 Identities=43% Similarity=0.654 Sum_probs=63.8
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC--chHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS--GSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~--~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||++||+|++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 567999999999999999999999999999999999765 467899999999999999999999997654
No 9
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=147.87 Aligned_cols=72 Identities=28% Similarity=0.531 Sum_probs=66.8
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCC-CCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNP-HSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKI 133 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~-~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~ 133 (646)
...|||+||||+++|+.++||++||+|++++||||++ .+.+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~ 90 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence 4589999999999999999999999999999999998 46689999999999999999999999999887544
No 10
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.69 E-value=3.9e-17 Score=136.14 Aligned_cols=66 Identities=44% Similarity=0.741 Sum_probs=61.3
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
...|||+||||+++|+.++||++||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46799999999999999999999999999999999864 4789999999999999999999999754
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=144.78 Aligned_cols=69 Identities=28% Similarity=0.493 Sum_probs=63.8
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||++||+|++++|||+++. +.+.+.|+.|++||+||+||.+|..||..+.
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 46799999999999999999999999999999999964 5588999999999999999999999998653
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=143.06 Aligned_cols=72 Identities=43% Similarity=0.649 Sum_probs=63.8
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--hHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhcc
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQD 135 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~ 135 (646)
.|||+||||+++|+.++||++||+|++++|||+++... +.+.|+.|++||++|+||.+|..||..+..+...
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 58999999999999999999999999999999997653 7889999999999999999999999988655443
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=140.31 Aligned_cols=71 Identities=44% Similarity=0.641 Sum_probs=65.1
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCC--chHHHHHHHHHHHHHhcCchhhHHHHHHhhhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHS--GSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIK 132 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~--~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~ 132 (646)
...|||+||||+++|+.++||++||+|++++|||+++.. .+.+.|+.|++||++|+||.+|..||..+...
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 467999999999999999999999999999999999765 47889999999999999999999999876543
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-16 Score=138.65 Aligned_cols=72 Identities=36% Similarity=0.542 Sum_probs=65.3
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhcc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQD 135 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~~ 135 (646)
...|||+||||+++|+.++||++||+|++++|||+++. ..+.|+.|++||++|+||.+|..||..+......
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 45799999999999999999999999999999999864 4679999999999999999999999988765543
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.4e-16 Score=143.20 Aligned_cols=73 Identities=33% Similarity=0.579 Sum_probs=66.3
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhhc
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKIQ 134 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~~ 134 (646)
...|||+||||+++|+.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+..
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 45799999999999999999999999999999999975 45788999999999999999999999988765543
No 16
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=137.37 Aligned_cols=63 Identities=38% Similarity=0.586 Sum_probs=59.8
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHH
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKE 124 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~ 124 (646)
...|||+||||+++|+.++||++||+|++++||||++..++.++|+.|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 468999999999999999999999999999999999998999999999999999999998853
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.64 E-value=6.3e-17 Score=143.76 Aligned_cols=71 Identities=35% Similarity=0.600 Sum_probs=65.4
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCC-CchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPH-SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKI 133 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~-~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~ 133 (646)
..|||+||||+++|+.++||++||+|++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 73 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence 4699999999999999999999999999999999985 5688999999999999999999999998876544
No 18
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.63 E-value=1.8e-16 Score=142.20 Aligned_cols=69 Identities=28% Similarity=0.475 Sum_probs=64.3
Q ss_pred CCcChhhhhcCCCCC-CHHHHHHHHHHhHHhhCCCCCCC----CchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFS-HINTIKKQYKKLALILHPDKNPH----SGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~A-s~~eIKkaYrklal~~HPDKn~~----~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++| +.++||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 568999999999999 99999999999999999999876 4478899999999999999999999998774
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.57 E-value=1.9e-15 Score=148.15 Aligned_cols=70 Identities=36% Similarity=0.590 Sum_probs=64.7
Q ss_pred cChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCC-CCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhh
Q 006401 64 KEWYQILQVEPFSHINTIKKQYKKLALILHPDKNP-HSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKI 133 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~-~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~ 133 (646)
.|||+||||+++|+.++||+|||+|++++||||++ .+.+.++|+.|++||++|+||.+|+.||..+..+.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence 58999999999999999999999999999999996 45688999999999999999999999999876543
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.55 E-value=3.9e-15 Score=144.28 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=62.6
Q ss_pred CcChhhhhcCCCCCC--HHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 63 SKEWYQILQVEPFSH--INTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As--~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
..|||+||||+++++ .++||++||+|++++||||++..+ +...|..|++||+||+||.+|+.||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 479999999999987 999999999999999999998776 56789999999999999999999998774
No 21
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.54 E-value=9.4e-16 Score=137.34 Aligned_cols=85 Identities=22% Similarity=0.424 Sum_probs=69.6
Q ss_pred HHHHHHHhCCChH-hHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--------hH
Q 006401 33 HAKKAQRLAPSLE-GLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--------SE 103 (646)
Q Consensus 33 ~a~kA~~l~P~l~-~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--------a~ 103 (646)
+-.+.++..++.+ .|.+||..+..+.. ...|||.|||++. |+.++||+|||+|++++||||++..+ |+
T Consensus 11 ~~~~i~~W~~~~~~~ir~lL~~l~~~l~--~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~ 87 (106)
T 3ag7_A 11 IDAKIRKWSSGKSGNIRSLLSTLQYILW--SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAE 87 (106)
T ss_dssp HHHHHHHHHTTTTTCHHHHHTTGGGTSC--TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhc--ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHH
Confidence 3455556666665 48999988876332 3579999999996 99999999999999999999987532 57
Q ss_pred HHHHHHHHHHHHhcCch
Q 006401 104 EAFKLVGEAFRVLSDKV 120 (646)
Q Consensus 104 ~~F~~I~eAy~vLsDp~ 120 (646)
++|+.|++||++|+|+.
T Consensus 88 ~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 88 KVFELLQEAWDHFNTLG 104 (106)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 89999999999999985
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.53 E-value=4.9e-15 Score=143.28 Aligned_cols=67 Identities=16% Similarity=0.359 Sum_probs=61.7
Q ss_pred cChhhhhcCCCCC--CHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPFS--HINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~A--s~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
+|||+||||++++ +..+||++||+|++++||||++..+ +.+.|..|++||+||+||.+|+.||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 4899999999999 9999999999999999999998765 34689999999999999999999998764
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.50 E-value=2.1e-15 Score=136.71 Aligned_cols=62 Identities=23% Similarity=0.285 Sum_probs=58.0
Q ss_pred cChhhhhcCCCCCCH--HHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHH
Q 006401 64 KEWYQILQVEPFSHI--NTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMR 128 (646)
Q Consensus 64 ~d~Y~ILgV~~~As~--~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~ 128 (646)
.+||+||||+++|+. ++||++||+|++++||||++. .++|+.|++||+||+||.+|+.||..
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 589999999999999 999999999999999999864 57999999999999999999999953
No 24
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.50 E-value=2.9e-15 Score=130.85 Aligned_cols=72 Identities=15% Similarity=0.323 Sum_probs=61.7
Q ss_pred HhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc----hHHHHHHHHHHHHHhcC
Q 006401 45 EGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG----SEEAFKLVGEAFRVLSD 118 (646)
Q Consensus 45 ~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~----a~~~F~~I~eAy~vLsD 118 (646)
.+|.+||..++.+.-. ..++|.+|||++.|+.++||+|||++++++||||++... |+++|+.|++||+||.+
T Consensus 16 ~~ir~lL~~l~~~L~~--~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 16 RNIRALLSTMHTVLWA--GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp TCHHHHHHHGGGTSCT--TCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--cccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 3578888887764432 158999999999999999999999999999999998654 78899999999999975
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.49 E-value=2e-15 Score=159.82 Aligned_cols=69 Identities=41% Similarity=0.673 Sum_probs=0.0
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++|+.++||+|||+|+++||||+++...|+++|++|++||++|+||.+|+.||..+.
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 347999999999999999999999999999999999888899999999999999999999999998743
No 26
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=142.90 Aligned_cols=69 Identities=20% Similarity=0.468 Sum_probs=61.9
Q ss_pred CCcChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCc------hHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 62 KSKEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSG------SEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~------a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
...|||+||||+++ ++.++||++||+|++++||||++..+ +.+.|+.|++||+||+||.+|+.||..+.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 35799999999986 78999999999999999999998654 45679999999999999999999997664
No 27
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.48 E-value=4.1e-15 Score=144.86 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=66.2
Q ss_pred hHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc----hHHHHHHHHHHHHHhcCchh
Q 006401 46 GLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG----SEEAFKLVGEAFRVLSDKVR 121 (646)
Q Consensus 46 ~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~----a~~~F~~I~eAy~vLsDp~k 121 (646)
+|..||..+..+. -...|||+||||++.|+.++||++||+|++++||||++... +++.|+.|++||++|+||.+
T Consensus 101 niRaLLssl~~vl--~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k 178 (182)
T 1n4c_A 101 NIRALLSTMHTVL--WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178 (182)
T ss_dssp CHHHHHHHGGGGS--CTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence 4666776654311 12369999999999999999999999999999999998765 78899999999999999999
Q ss_pred hHHH
Q 006401 122 RKEY 125 (646)
Q Consensus 122 R~~Y 125 (646)
|+.|
T Consensus 179 R~~Y 182 (182)
T 1n4c_A 179 KPLY 182 (182)
T ss_dssp SCCC
T ss_pred hhhC
Confidence 9876
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.47 E-value=1.3e-14 Score=123.15 Aligned_cols=60 Identities=20% Similarity=0.436 Sum_probs=55.4
Q ss_pred cChhhhhcCCCC--CCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHH
Q 006401 64 KEWYQILQVEPF--SHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYD 126 (646)
Q Consensus 64 ~d~Y~ILgV~~~--As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD 126 (646)
.++|+||||+++ ++.++||++||+|++++|||++ ++.+.|+.|++||++|+|+.+|..++
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~---~~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG---GSHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS---CCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 589999999999 9999999999999999999997 45789999999999999999998744
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.46 E-value=2.3e-14 Score=124.25 Aligned_cols=60 Identities=27% Similarity=0.283 Sum_probs=55.3
Q ss_pred CcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCCCCc--hHHHHHHHHHHHHHhcCchhh
Q 006401 63 SKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNPHSG--SEEAFKLVGEAFRVLSDKVRR 122 (646)
Q Consensus 63 ~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~~~~--a~~~F~~I~eAy~vLsDp~kR 122 (646)
..++|+||||.++|+.++||++||+|++++|||+++... +.+.|+.|++||++|+|...|
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 358999999999999999999999999999999998753 789999999999999998776
No 30
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.46 E-value=6.6e-15 Score=142.50 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=57.0
Q ss_pred cChhhhhcCCCCCC--HHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHhh
Q 006401 64 KEWYQILQVEPFSH--INTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLR 130 (646)
Q Consensus 64 ~d~Y~ILgV~~~As--~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~ 130 (646)
.|||+||||+++|+ .++||+|||+|++++||||++. +++|+.|++||++|+||.+|+.||..+.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 69999999999998 5999999999999999999864 4799999999999999999999998764
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.43 E-value=5e-14 Score=137.39 Aligned_cols=66 Identities=23% Similarity=0.495 Sum_probs=60.7
Q ss_pred CCcChhhhh------cCCC-CCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhhHHHHHHh
Q 006401 62 KSKEWYQIL------QVEP-FSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRRKEYDMRL 129 (646)
Q Consensus 62 ~~~d~Y~IL------gV~~-~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~ 129 (646)
...|||+|| |+++ +|+..+||++||+|++++||||++. +.+.|..|++||+||+||.+|+.||..+
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 567999999 4665 8999999999999999999999876 7789999999999999999999999877
No 32
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.4e-13 Score=114.46 Aligned_cols=56 Identities=30% Similarity=0.299 Sum_probs=51.6
Q ss_pred cChhhhhcCCC-CCCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCchhh
Q 006401 64 KEWYQILQVEP-FSHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDKVRR 122 (646)
Q Consensus 64 ~d~Y~ILgV~~-~As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp~kR 122 (646)
.++|+||||++ +++.++||++||+|++++|||++ ++.+.|+.|++||++|+|+..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence 48899999999 79999999999999999999995 5678999999999999998765
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.36 E-value=1.7e-12 Score=136.00 Aligned_cols=116 Identities=28% Similarity=0.351 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHHh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLALI 91 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal~ 91 (646)
.-+..+|..++..+++..|...+.++.++.|....+...+..+..........++|.+||+.+.++.++|+++|+++++.
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 44566788888999999999999999999999887777777766655555677999999999999999999999999999
Q ss_pred hCCCCCCCCc----hHHHHHHHHHHHHHhcCchhhHHHHH
Q 006401 92 LHPDKNPHSG----SEEAFKLVGEAFRVLSDKVRRKEYDM 127 (646)
Q Consensus 92 ~HPDKn~~~~----a~~~F~~I~eAy~vLsDp~kR~~YD~ 127 (646)
+|||+.+.+. +...|+.|.+||++|+||.+|..||.
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 9999987654 78899999999999999999999995
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.26 E-value=5.8e-13 Score=154.29 Aligned_cols=72 Identities=35% Similarity=0.579 Sum_probs=40.7
Q ss_pred CCcChhhhhcCCCCCCHHHHHHHHHHhHHhhCCCCCC-CCchHHHHHHHHHHHHHhcCchhhHHHHHHhhhhh
Q 006401 62 KSKEWYQILQVEPFSHINTIKKQYKKLALILHPDKNP-HSGSEEAFKLVGEAFRVLSDKVRRKEYDMRLRIKI 133 (646)
Q Consensus 62 ~~~d~Y~ILgV~~~As~~eIKkaYrklal~~HPDKn~-~~~a~~~F~~I~eAy~vLsDp~kR~~YD~~~~~~~ 133 (646)
...|||+||||+++|+.++||+|||+|++++||||++ .+.+.++|+.|++||++|+||.+|+.||..+..+.
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 4679999999999999999999999999999999986 45688999999999999999999999999876544
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.25 E-value=7.5e-07 Score=72.83 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=45.9
Q ss_pred ChhhhhcCCCC---CCHHHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcC
Q 006401 65 EWYQILQVEPF---SHINTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRVLSD 118 (646)
Q Consensus 65 d~Y~ILgV~~~---As~~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~vLsD 118 (646)
.-|.||||+++ ++.++|+++||+|....||||. |....+..|++|+++|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHH
Confidence 34899999999 9999999999999999999995 677888999999999853
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.04 E-value=0.026 Score=64.28 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=39.1
Q ss_pred cCCcChhhhhcCCCCCCH--HHHHHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHHH
Q 006401 61 SKSKEWYQILQVEPFSHI--NTIKKQYKKLALILHPDKNPHSGSEEAFKLVGEAFRV 115 (646)
Q Consensus 61 ~~~~d~Y~ILgV~~~As~--~eIKkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~v 115 (646)
.+..|||.|||++.++.. .+|+++||+||++.+++ .+++.+|..|+.|
T Consensus 626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 467789999999766554 67999999999966655 5789999999876
No 37
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=87.00 E-value=0.23 Score=42.76 Aligned_cols=35 Identities=23% Similarity=0.698 Sum_probs=27.3
Q ss_pred cceeeeccccchhhHHHHhhcc---ceeecCCCCCceee
Q 006401 151 ETFWTACSRCRLLHQFERKYLD---QILVCPGCKMSFEA 186 (646)
Q Consensus 151 ~tFwt~C~~C~~~yey~r~y~~---~~l~C~~C~~~f~A 186 (646)
.+|.+.| +||..|++....+. ..+.|++||+.+..
T Consensus 20 ~~y~ypC-rCGd~F~IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 20 ETYFYPC-PCGDNFSITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp TEEEEEC-TTSSEEEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred CEEEEcC-CCCCEEEECHHHHhCCCEEEECCCCccEEEE
Confidence 4788889 69999998776552 36789999997654
No 38
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=85.62 E-value=0.26 Score=41.96 Aligned_cols=35 Identities=23% Similarity=0.531 Sum_probs=27.0
Q ss_pred cceeeeccccchhhHHHHhhcc---ceeecCCCCCceee
Q 006401 151 ETFWTACSRCRLLHQFERKYLD---QILVCPGCKMSFEA 186 (646)
Q Consensus 151 ~tFwt~C~~C~~~yey~r~y~~---~~l~C~~C~~~f~A 186 (646)
.+|.+.| +||..|++....+. ..+.|++||+.+..
T Consensus 20 ~~y~ypC-rCGd~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 20 QMFTYPC-PCGDRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp TEEEEEE-TTTEEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred CEEEEeC-CCCCeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 4678889 79999998876552 36789999996654
No 39
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=84.79 E-value=0.34 Score=41.19 Aligned_cols=36 Identities=22% Similarity=0.676 Sum_probs=27.6
Q ss_pred ccceeeeccccchhhHHHHhhcc---ceeecCCCCCceee
Q 006401 150 KETFWTACSRCRLLHQFERKYLD---QILVCPGCKMSFEA 186 (646)
Q Consensus 150 ~~tFwt~C~~C~~~yey~r~y~~---~~l~C~~C~~~f~A 186 (646)
...|.+.| +||..|++....+. ..+.|++|++.+..
T Consensus 26 ~~~y~y~C-rCGd~F~it~edL~~ge~iv~C~sCSL~I~V 64 (83)
T 1wge_A 26 SETYFYPC-PCGDNFAITKEDLENGEDVATCPSCSLIIKV 64 (83)
T ss_dssp TTEEEECC-SSSSCEEEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred CCEEEEeC-CCCCEEEECHHHHhCCCEEEECCCCceEEEE
Confidence 35677888 79999998876652 36789999997654
No 40
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=84.02 E-value=2.3 Score=35.83 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+.|..+..+|..++..+++..|...+.+|..+.|....+-
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 41 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY 41 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 3578889999999999999999999999999999975433
No 41
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=80.96 E-value=6.1 Score=31.67 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
.+..+..+|..++..+++..|...+.+|..+.|....+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 40 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG 40 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 46778889999999999999999999999999987543
No 42
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=76.38 E-value=6.4 Score=33.88 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 7 AEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 7 ~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
..|.|...+.++..++..++|+.|...+.+|..++|....
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~ 43 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT 43 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4578889999999999999999999999999999999754
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=69.37 E-value=11 Score=32.38 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+.|+..+.++..++..++|..|...+.+|.++.|....+-
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 50 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILY 50 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4577788999999999999999999999999999976443
No 44
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=67.51 E-value=62 Score=28.14 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=58.2
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHH
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQY 85 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaY 85 (646)
+....|..+..+|..++..+++..|...+.+|..++|....+--.+..+-. -+| ..++-...|
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------------~~g-----~~~~A~~~~ 68 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS------------ASG-----QHEKAAEDA 68 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH------------HTT-----CHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH------------Hcc-----CHHHHHHHH
Confidence 345678889999999999999999999999999999987543333332211 111 122233333
Q ss_pred HHhHHhhCCCCCCCCchHHHHHHHHHHHHHhcCc
Q 006401 86 KKLALILHPDKNPHSGSEEAFKLVGEAFRVLSDK 119 (646)
Q Consensus 86 rklal~~HPDKn~~~~a~~~F~~I~eAy~vLsDp 119 (646)
+ .++.++|+. ...+..+..+|..+.+.
T Consensus 69 ~-~al~~~p~~------~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 69 E-LATVVDPKY------SKAWSRLGLARFDMADY 95 (164)
T ss_dssp H-HHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred H-HHHHhCCCC------HHHHHHHHHHHHHccCH
Confidence 3 345556662 34556666677666654
No 45
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=66.41 E-value=9 Score=33.87 Aligned_cols=47 Identities=6% Similarity=-0.075 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 7 AEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 7 ~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
..+.+.....+|..++..++++.|...+.+|.++.|....+-..+..
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556677889999999999999999999999999998655444443
No 46
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=66.36 E-value=16 Score=28.92 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+..|..++..+++..|...+.++..++|....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 35 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD 35 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 56788899999999999999999999998754
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=65.19 E-value=14 Score=31.84 Aligned_cols=64 Identities=19% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCCC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPFS 76 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~A 76 (646)
+.-+..+|..++..+++..|...+.+|.++.|....+--.+..+-. ... ....|-.+|.+.|+-
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV--AMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCcCC
Confidence 4556778999999999999999999999999997554333333221 111 234566677777753
No 48
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=63.56 E-value=21 Score=30.47 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=36.6
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
...+.+..+..+|..++..+++..|...+.++..+.|....
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 48 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI 48 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Confidence 45677888999999999999999999999999999998644
No 49
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=63.23 E-value=6.2 Score=32.60 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+.-+..+|..++..+++..|...+.+|..++|.....-
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 56 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAW 56 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHH
Confidence 34567789999999999999999999999999875433
No 50
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=62.52 E-value=57 Score=28.33 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=31.3
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRL 40 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l 40 (646)
+..+.|..++.++..++..++|..|...+.+|..+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~ 40 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTR 40 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999
No 51
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=61.83 E-value=17 Score=28.76 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.+..+..+|..++..+++..|...+.++..++|....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 39 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV 39 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 4677888999999999999999999999999998644
No 52
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=59.84 E-value=14 Score=32.44 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+.-+..+|..++..+++..|...+.+|..++|....
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 344567889999999999999999999999999754
No 53
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=59.82 E-value=20 Score=29.23 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.-+..+|..++..+++..|...+.+|.+++|....+-..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 47 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHL 47 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 45567889999999999999999999999999976543333
No 54
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=59.42 E-value=25 Score=26.84 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
.+.-+..+|..++..+++..|...+.+|..+.|....+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 45 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45667788999999999999999999999999986543
No 55
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=59.28 E-value=24 Score=30.89 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCC
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPF 75 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~ 75 (646)
..+.-+..+|..++..+++..|...+.+|..+.|....+--.+..+- .... ...+|-.+|.+.|+
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~--~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKAR--IAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH--HHHhcHHHHHHHHHHHHhcCCC
Confidence 34556678999999999999999999999999999754333332222 1111 23456667888775
No 56
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=58.79 E-value=29 Score=26.39 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVT 52 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~ 52 (646)
-+..+|..++..++++.|...+.++..+.|....+...+.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3556788889999999999999999999998765444443
No 57
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=57.47 E-value=71 Score=25.43 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.|..+..+|..++..+++..|..++.++..+.|....+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 40 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY 40 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 356778889999999999999999999999999986543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=55.75 E-value=17 Score=32.20 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-...+|..++..|++++|...+.+|.+++|....+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 41 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET 41 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5556789999999999999999999999999997544
No 59
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=55.14 E-value=33 Score=28.07 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
.-+..+|..++..+++..|...+.++..++|...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 4456788999999999999999999999999873
No 60
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=54.67 E-value=28 Score=28.89 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
.+..+..+|..++..+++..|...+.+|..++|....+-
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 46 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYY 46 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHH
Confidence 467788999999999999999999999999999975433
No 61
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=52.98 E-value=34 Score=28.24 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.+.-+..+|..++..+++..|...+.+|.+++|....+.-.+
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 67 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 4456667889999999999999999999999999985544333
No 62
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.69 E-value=29 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
.+.-+..+|..++..+++..|...+.++..+.|....+
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 36667789999999999999999999999999986443
No 63
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=52.52 E-value=27 Score=28.93 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVT 52 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~ 52 (646)
+.-+..+|..++..+++..|...+.+|.++.|....+--.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 455677899999999999999999999999999775444443
No 64
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=52.24 E-value=40 Score=26.92 Aligned_cols=41 Identities=32% Similarity=0.347 Sum_probs=35.7
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.....+..+..+|..++..+++..|...+.++..+.|....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 47 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV 47 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH
Confidence 34566788889999999999999999999999999998644
No 65
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=50.82 E-value=37 Score=29.07 Aligned_cols=40 Identities=10% Similarity=0.002 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+.+..+..+|..++..+++..|...+.++..+.|....+-
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 55 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF 55 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHH
Confidence 4566778899999999999999999999999999876543
No 66
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=50.11 E-value=39 Score=26.52 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+.-+..+|..++..+++..|...+.++..+.|....+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHH
Confidence 44567788889999999999999999999999865433
No 67
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=49.51 E-value=1e+02 Score=26.76 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..++..++++.|...+.+|.++.|....+
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 101 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDL 101 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHH
Confidence 3445668888999999999999999999999997543
No 68
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=48.39 E-value=41 Score=34.85 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=32.9
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
+..+.|..++.+|..++..+++..|...+.+|.++.|.
T Consensus 218 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~ 255 (370)
T 1ihg_A 218 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG 255 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 45567888899999999999999999999999996554
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=48.06 E-value=1.1e+02 Score=28.60 Aligned_cols=32 Identities=9% Similarity=-0.095 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
...+|..++..+++..|...+.++...+|...
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 36789999999999999999999999999854
No 70
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=47.92 E-value=18 Score=34.00 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=36.2
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
.+..+|..++.++..++..++|++|...+.+|.++.|..
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 457789999999999999999999999999999999993
No 71
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=47.44 E-value=11 Score=38.51 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+..+|..++..+++..|...+.+|..++|....
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 265 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK 265 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 467889999999999999999999999998643
No 72
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=46.62 E-value=36 Score=28.80 Aligned_cols=41 Identities=15% Similarity=-0.018 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
.+..+|..++..+++.+|...+.+|.+++|....+--.+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 59 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGL 59 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 46778899999999999999999999999997654434433
No 73
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=45.63 E-value=1.7e+02 Score=26.19 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=35.4
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
+..+.+..++.+|..++..++|..|...+.+|..+.|...
T Consensus 33 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 4456788889999999999999999999999999998754
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=45.58 E-value=47 Score=29.85 Aligned_cols=43 Identities=5% Similarity=-0.161 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.+..+..+|..++..+++.+|...+.+|..+.|....+-..+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l 76 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4566778899999999999999999999999999976543333
No 75
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=44.67 E-value=54 Score=25.40 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+..+|..++..+++..|...+.++..+.|....+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 42 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH
Confidence 4567778888889999999999999888886543
No 76
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=44.51 E-value=46 Score=26.09 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
-+..+|..++..+++..|...+.+|..++|....+
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45667888999999999999999999999997653
No 77
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=44.49 E-value=49 Score=27.89 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
.-+..+|..++..+++..|...+.+|..+.|....+.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3455678888999999999999999999999976443
No 78
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=43.34 E-value=54 Score=29.57 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..++..+++..|...+.+|..+.|....+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 124 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA 124 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHH
Confidence 3445678999999999999999999999999986543
No 79
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=43.33 E-value=39 Score=27.34 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.+..+..+|..++..+++..|...+.++..++|....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 51 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK 51 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4566788999999999999999999999999998643
No 80
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=43.08 E-value=57 Score=25.95 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..++..+++..|...+.++..+.|....+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 4456778889999999999999999999999986543
No 81
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=43.05 E-value=45 Score=26.98 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.-+..+|..++..++++.|..++.++..++|....+--.+
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 44567788899999999999999999999999865443333
No 82
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=42.37 E-value=54 Score=25.79 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
.-+..+|..++..+++.+|...+.+|..++|..
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 345678889999999999999999999999997
No 83
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=42.30 E-value=10 Score=31.15 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=8.0
Q ss_pred eCCCCcEeEEecCCC
Q 006401 525 FPTKGSVWALYNEAA 539 (646)
Q Consensus 525 yPrkGevWAlyk~W~ 539 (646)
++.|..+|+||+ |.
T Consensus 57 ~Dek~~~W~iy~-~~ 70 (72)
T 3eyi_A 57 MDEQSKAWTIYR-WT 70 (72)
T ss_dssp ECTTTCEEEEC----
T ss_pred CCCCCCceeEEE-ee
Confidence 366777888887 54
No 84
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=41.62 E-value=40 Score=29.59 Aligned_cols=39 Identities=5% Similarity=-0.002 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSS 49 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~q 49 (646)
+.-+..+|..++..+++++|...+.+|..+.|....+--
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345677889999999999999999999999998754433
No 85
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=41.53 E-value=56 Score=28.62 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHhCCChHhHHhhHH
Q 006401 11 ASRLKGIAET-KFKNSNL--KSALKHAKKAQRLAPSLEGLSSMVT 52 (646)
Q Consensus 11 A~r~~~iAe~-~l~~~d~--~gA~r~a~kA~~l~P~l~~i~qll~ 52 (646)
+.-+..+|.. ++..+++ ..|...+.++..+.|....+...+.
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3345667777 6788888 8889999999888888654443333
No 86
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=41.20 E-value=66 Score=25.30 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+.-+..+|..++..+++..|..++.++..+.|....
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 78 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH
Confidence 445677888999999999999999999999998653
No 87
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=40.84 E-value=1.2e+02 Score=30.45 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 8 EREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 8 ~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
-+.+..+..+|..++..+++..|...+.+|..+.|..
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~ 180 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE 180 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc
Confidence 3467778889999999999999999999999999987
No 88
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=40.80 E-value=50 Score=35.02 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 8 EREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 8 ~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
-+.|..+..+|..++..++|..|...+.+|..+.|..
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~ 301 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc
Confidence 3567788899999999999999999999999999986
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=40.57 E-value=73 Score=25.03 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+.-+..+|..++..+++..|...+.++..++|....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 44 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 44 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence 556678899999999999999999999999997643
No 90
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=40.47 E-value=1.8e+02 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
|..+..+|..++..+++.+|...+.+|..+.|....+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 40 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY 40 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 5677889999999999999999999999999986543
No 91
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=40.15 E-value=56 Score=32.26 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 16 GIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 16 ~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.+|..++..+++++|...+.+|..+.|....
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3455566677777777777777777776543
No 92
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=40.09 E-value=34 Score=30.78 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..++..+++++|...+.+|..+.|....+
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 3445678889999999999999999999999997643
No 93
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=40.00 E-value=36 Score=29.21 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
+.-+..+|..++..+++..|...+.+|..+.|....+.
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34567789999999999999999999999999976543
No 94
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=38.68 E-value=72 Score=27.88 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.+..+..+|..++..+++.+|...+.+|..+.|....+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 57 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHH
Confidence 456667889999999999999999999999999987543
No 95
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=38.24 E-value=72 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.-+..+|..++..+++..|...+.+|.+++|....
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 78 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 78 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence 34566888899999999999999999999999654
No 96
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=38.18 E-value=58 Score=26.74 Aligned_cols=43 Identities=12% Similarity=-0.040 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKI 56 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v 56 (646)
...+|..++..+++..|...+.++..+.|....+.....++..
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4557888899999999999999999999998876666555443
No 97
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=37.82 E-value=60 Score=26.70 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.++|.+++.+++++|...+-+|..+||....+-+++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5688999999999999999999999999986544444
No 98
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=37.40 E-value=1.1e+02 Score=24.15 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFK 55 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~ 55 (646)
+.-+..+|..++..+++..|...+.++..+.|... +...+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD-VLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHH-HHHHHHHHH
Confidence 44566788999999999999999999999999643 444444443
No 99
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=37.19 E-value=1.1e+02 Score=32.11 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCh--------HhHHhhHHHHHHHHHhcCCcChhhhhcCC-----CCCCHHHH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSL--------EGLSSMVTAFKILRVASKSKEWYQILQVE-----PFSHINTI 81 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l--------~~i~qll~~~~v~~a~~~~~d~Y~ILgV~-----~~As~~eI 81 (646)
+..|-+.+..+.|.+|...++.....-|-+ +.+.+++..|.- | |||+. +....+++
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrE----------Y-ilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETARE----------Y-ILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHTCCTTCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHhHHhhCCCCCCCCchHHHHHHHHHHHH-------------HhcCchhhHHHHHHhhhhhcccccccCCCCCCCC
Q 006401 82 KKQYKKLALILHPDKNPHSGSEEAFKLVGEAFR-------------VLSDKVRRKEYDMRLRIKIQDEKVALDDNDDGFA 148 (646)
Q Consensus 82 KkaYrklal~~HPDKn~~~~a~~~F~~I~eAy~-------------vLsDp~kR~~YD~~~~~~~~~~~~~~~~~~~~~~ 148 (646)
+++-.=.|-..|..-.+......--..++.||. +|.-...-..-++-++.....+....+.-+-.++
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da~eidyD 266 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDAIPIDFD 266 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCSSCCSCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCccccCCC
Q ss_pred Cccce---------------eeeccccchhhHHHHhhccceeecCCCCCceeeeec
Q 006401 149 GKETF---------------WTACSRCRLLHQFERKYLDQILVCPGCKMSFEAVEA 189 (646)
Q Consensus 149 ~~~tF---------------wt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e~ 189 (646)
....| ...|+.||..|. ..|.+. .|+-|..+-+..+.
T Consensus 267 ~~~~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~--~~~kG~--lC~vC~l~~IG~~a 318 (325)
T 3mv2_A 267 PYAKFDICAATYKPIYEDTPSVSDPLTGSKYV--ITEKDK--IDRIAMISKIGAPA 318 (325)
T ss_dssp TTSCEEECTTTCCEEESSSCEEECTTTCCEEE--GGGTTS--BCSSSSCBBTTCCC
T ss_pred CCCCceeecCCcccccCCCCCccCCCCCCeec--hhhCCC--CCCCCcCcccCCCc
No 100
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=36.99 E-value=80 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
+..+|..++..+++..|...+.++...+|...
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 36 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGV 36 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc
Confidence 56788999999999999999999999999976
No 101
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=36.75 E-value=98 Score=26.04 Aligned_cols=37 Identities=16% Similarity=0.002 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..++..+++..|...+.++..++|....+
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 4456778999999999999999999999999987543
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=36.45 E-value=48 Score=30.83 Aligned_cols=45 Identities=16% Similarity=-0.124 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHH
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKI 56 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v 56 (646)
.-+..+|..++..+++..|..++.+|..++|..+.+.+.+..+..
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 344558888999999999999999999999999888887766544
No 103
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=36.28 E-value=7 Score=31.82 Aligned_cols=32 Identities=22% Similarity=0.610 Sum_probs=23.7
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
-.|+.|++.-.|... ...|.|+.|++.|.-.+
T Consensus 9 L~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKS--KDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEETT--TTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCC--CCEEEcCCCCcEecCCC
Confidence 369999986555432 46789999999887654
No 104
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=35.56 E-value=1.2e+02 Score=24.99 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
...+|..+++.+++..|..+..+|.++.|....+..-+..
T Consensus 49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~ 88 (104)
T 2v5f_A 49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence 3567788899999999999999999999998765433333
No 105
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=35.45 E-value=67 Score=30.79 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCCCC--HHHHHHHHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPFSH--INTIKKQYKK 87 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~As--~~eIKkaYrk 87 (646)
+..+|..++..+++..|...+.++..++|....+--.+..+- .... ....|=.+|.+.|+.. ...+.++++.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY--LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 456888999999999999999999999998654333332222 1111 1223445667766532 2344444444
Q ss_pred h
Q 006401 88 L 88 (646)
Q Consensus 88 l 88 (646)
+
T Consensus 353 ~ 353 (359)
T 3ieg_A 353 L 353 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=35.07 E-value=7.3 Score=31.88 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=23.3
Q ss_pred eccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
.|+.|++.-.|... ...|.|+.|++.|.-.+
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 10 VCPVCKGRLEFQRA--QAELVCNADRLAFPVRD 40 (70)
T ss_dssp BCTTTCCBEEEETT--TTEEEETTTTEEEEEET
T ss_pred ECCCCCCcCEEeCC--CCEEEcCCCCceecCCC
Confidence 69999996555432 45789999999887654
No 107
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=34.63 E-value=78 Score=32.68 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCC
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPF 75 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~ 75 (646)
..+.-+..+|..++..+++..|+..+.+|..+.|....+--.+..+-. ... ...+|-..|.+.|+
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~--~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ--GLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH--HccCHHHHHHHHHHHHHhCCC
Confidence 446667889999999999999999999999999986543333322221 111 12344556677664
No 108
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=34.56 E-value=3e+02 Score=26.00 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
++..++.+|..++..+++..|..++.++..++|....+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 40 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY 40 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence 466788999999999999999999999999999875433
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=34.30 E-value=1.1e+02 Score=27.34 Aligned_cols=35 Identities=14% Similarity=-0.084 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
.-+..+|..++..+++..|...+.+|..++|....
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 34566777888888888888888888888887654
No 110
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=34.23 E-value=49 Score=25.69 Aligned_cols=31 Identities=3% Similarity=-0.060 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPS 43 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~ 43 (646)
-+..+|..++..++++.|...+.++.++.|.
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3456788899999999999999999999998
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=34.18 E-value=70 Score=31.26 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTA 53 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~ 53 (646)
+..++.+|..++..+++++|...+.+|..+.|....+.-.+..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 159 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAE 159 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 3456788999999999999999999999999998765544443
No 112
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.07 E-value=7.9 Score=31.60 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=23.2
Q ss_pred eccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
.|+.|++.-.|... ...|.|+.|++.|.-.+
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 10 ACPICKGPLKLSAD--KTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCTTTCCCCEECTT--SSEEEETTTTEEEEEET
T ss_pred eCCCCCCcCeEeCC--CCEEEcCCCCcEecCcC
Confidence 69999986555432 46789999999887654
No 113
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=33.01 E-value=77 Score=26.80 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
-+..++..+...+++..|...+.+|..+.|+.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 3445677788999999999999999999998653
No 114
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=32.11 E-value=79 Score=32.35 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 7 AEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 7 ~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
.++.|..++.+|..++..+++..|...+.++..+.|...
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 40 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV 40 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHH
Confidence 467788899999999999999999999999999999643
No 115
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=31.23 E-value=1.5e+02 Score=27.42 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHH
Q 006401 7 AEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILR 58 (646)
Q Consensus 7 ~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~ 58 (646)
.+.++ +-.+|..++..+||..|++++.++.++.|....+..+...++-..
T Consensus 69 ~~rd~--lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 69 EQRDY--VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHH--HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred chHHH--HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34444 455677779999999999999999999999887888887777533
No 116
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=31.22 E-value=2.9e+02 Score=24.76 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006401 8 EREASRLKGIAETKFKNSNLKSALKHAKKAQRLA 41 (646)
Q Consensus 8 ~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~ 41 (646)
+.+|..+..+|..++..+++..|..++.++..+.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 35 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH 35 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999998
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=30.63 E-value=3.2e+02 Score=25.02 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
..+|..++..+++..|...+.++.+++|...
T Consensus 45 ~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 45 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 3345555555555555555555555555543
No 118
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=30.59 E-value=3.3e+02 Score=25.23 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
.+..+...|..++..+++..|...+.++...+|..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 48 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH 48 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 35566677777777777777777777777777765
No 119
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.52 E-value=9.9 Score=30.86 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=23.3
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
-.|+.|++.-.|.. ....|.|+.|++.|.-.+
T Consensus 11 L~CP~ck~~L~~~~--~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 11 LACPKDKGPLRYLE--SEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CBCTTTCCBCEEET--TTTEEEETTTTEEEEEET
T ss_pred hCCCCCCCcCeEeC--CCCEEEcCCCCccccCCC
Confidence 36999999655543 245789999999887654
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=30.34 E-value=80 Score=31.81 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCCC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPFS 76 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~A 76 (646)
+.-+..+|..++..+++..|...+.+|..++|....+--.+..+ +.... ....|-.+|.+.|+-
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA--HLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHCCCC
Confidence 55667899999999999999999999999999875433222222 21111 123555677777653
No 121
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.33 E-value=2.2e+02 Score=23.14 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
..+..+..+|..++..+++..|...+.++.+++|...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 62 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ 62 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch
Confidence 4577888999999999999999999999999999863
No 122
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.00 E-value=64 Score=27.88 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
+.++|.++..++++.|..++-+|..+||....+-+++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6688999999999999999999999999986544443
No 123
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.92 E-value=11 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=23.2
Q ss_pred eccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 156 ACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 156 ~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
.|+.|++.-.|... ...|.|+.|++.|.-.+
T Consensus 10 ~CP~ck~~L~~~~~--~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 10 VCPVTKGRLEYHQD--KQELWSRQAKLAYPIKD 40 (68)
T ss_dssp BCSSSCCBCEEETT--TTEEEETTTTEEEEEET
T ss_pred ECCCCCCcCeEeCC--CCEEEcCCCCcEecCCC
Confidence 69999986555432 46789999999887654
No 124
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=29.18 E-value=2.1e+02 Score=29.43 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=36.1
Q ss_pred hcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHH
Q 006401 6 EAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLS 48 (646)
Q Consensus 6 ~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~ 48 (646)
...+.|..+..+|..++..+++..|...+.++..++|....+-
T Consensus 20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 62 (537)
T 3fp2_A 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHH
Confidence 3445688899999999999999999999999999999875433
No 125
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.74 E-value=24 Score=32.76 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCccceeeeccccchhhHHHHhhccceeecCCCCCcee
Q 006401 148 AGKETFWTACSRCRLLHQFERKYLDQILVCPGCKMSFE 185 (646)
Q Consensus 148 ~~~~tFwt~C~~C~~~yey~r~y~~~~l~C~~C~~~f~ 185 (646)
....+|-..|..|+..|+-. .....||.|+..+.
T Consensus 126 ~~~~~~~y~C~~Cg~~~~~~----~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 126 KKVIKWRYVCIGCGRKFSTL----PPGGVCPDCGSKVK 159 (165)
T ss_dssp SSCCCCCEEESSSCCEESSC----CGGGBCTTTCCBEE
T ss_pred cccccEEEECCCCCCcccCC----CCCCcCCCCCCcce
Confidence 35567778899999987532 23348999998754
No 126
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=27.68 E-value=4.5e+02 Score=27.77 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
-+..+|..++..++++.|...+.+|.++.|..
T Consensus 42 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 42 YYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 33444555555555555555555555555543
No 127
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=27.53 E-value=99 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
+..+|..++..+++..|..++.++..+.|...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 35 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 35 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch
Confidence 45678888888999999999999998888754
No 128
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=27.52 E-value=1.7e+02 Score=28.40 Aligned_cols=31 Identities=13% Similarity=-0.038 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
...+|..++..+++++|...++++.++.|..
T Consensus 222 ~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 222 ATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 3455666677777777777777777777766
No 129
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=27.14 E-value=1.1e+02 Score=25.23 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc--CCcChhhhhcCCCCC-CHHHHHHH
Q 006401 11 ASRLKGIAETKFKNSN---LKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS--KSKEWYQILQVEPFS-HINTIKKQ 84 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d---~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~--~~~d~Y~ILgV~~~A-s~~eIKka 84 (646)
+..+...|+.++..++ ...|+.++.+|..++|......-++.........- .-.-|-.+|...|.+ ....|..+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~ 85 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIES 85 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 5667778888876655 79999999999999999877666665543311000 123466678877763 34455555
Q ss_pred HHH
Q 006401 85 YKK 87 (646)
Q Consensus 85 Yrk 87 (646)
..+
T Consensus 86 I~~ 88 (93)
T 3bee_A 86 INK 88 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 130
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=27.09 E-value=1.3e+02 Score=26.27 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMV 51 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll 51 (646)
-+..++...+..+++..|...+.+|..+.|....+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~l 113 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKL 113 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 345566777788888888888888888888865444333
No 131
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=26.95 E-value=70 Score=25.93 Aligned_cols=33 Identities=15% Similarity=-0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 12 SRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 12 ~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
.-+..+|..++..+++..|+..+.+|..+.|..
T Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 54 VAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 345667888999999999999999999998864
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=26.34 E-value=1e+02 Score=26.80 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+.-+..+|..++..+++..|...+.+|..+.|....+
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 80 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3456778899999999999999999999999987543
No 133
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=26.27 E-value=80 Score=28.99 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+..++..|..++..+++..|...+.++..+.|....
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 39 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE 39 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 556788999999999999999999999999998654
No 134
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=25.80 E-value=85 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
|.|++.+.+|...+..+|++++-..+.||+.+.-.|
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L 69 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTEL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999876443
No 135
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.56 E-value=85 Score=26.26 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=29.6
Q ss_pred CCCChhcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006401 1 METDPEAEREASRLKGIAETKFKNSNLKSALKHAKKAQRL 40 (646)
Q Consensus 1 me~~~~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l 40 (646)
|+| .-..|..++..|...=..+++.+|..++..|..+
T Consensus 9 ~~~---~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 9 MDP---QSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp --C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCh---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555 6677888999999889999999999988877654
No 136
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=25.50 E-value=72 Score=25.67 Aligned_cols=33 Identities=6% Similarity=-0.029 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
-+..+|..++..++++.|...+.+|..+.|...
T Consensus 43 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 43 TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 355678889999999999999999999977643
No 137
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=24.95 E-value=1.6e+02 Score=25.87 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+.+.-+..+|..++..+++..|...+.++..++|....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 43 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL 43 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH
Confidence 45667788999999999999999999999999998654
No 138
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=24.76 E-value=1.3e+02 Score=24.57 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLA 41 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~ 41 (646)
|.-+.++|...+..++|..|...+++|.++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~ 35 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQL 35 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhh
Confidence 5678899999999999999999999999986
No 139
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=24.74 E-value=1.5e+02 Score=26.99 Aligned_cols=31 Identities=26% Similarity=0.135 Sum_probs=28.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 17 IAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 17 iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
+|..++..++++.|...+.+|.+++|....+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 8899999999999999999999999997543
No 140
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=24.53 E-value=1.4e+02 Score=27.54 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
..+|..++..+++..|...+.+|..+.|..
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 38 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKENPQD 38 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 344445555555555555555555555554
No 141
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=24.42 E-value=1.2e+02 Score=27.89 Aligned_cols=31 Identities=16% Similarity=-0.128 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLA 41 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~ 41 (646)
+.-+..+|..++..+++++|...+.+|.++.
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 3445667777888888888888888888888
No 142
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=24.26 E-value=52 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=32.1
Q ss_pred CChhcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006401 3 TDPEAEREASRLKGIAETKFKNSNLKSALKHAKKAQRL 40 (646)
Q Consensus 3 ~~~~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l 40 (646)
+.++.-.+|.+.-.-|-..|.-.|..-|++.+++|.++
T Consensus 12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 34566778888888899999999999999999998875
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.96 E-value=1.1e+02 Score=32.30 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhc----CCcChhhhhcCCCC
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVAS----KSKEWYQILQVEPF 75 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~----~~~d~Y~ILgV~~~ 75 (646)
+.-+..+|..++..+++..|+..+.+|..+.|....+--.+ ..++.... ...+|-.+|.+.|+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~--g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR--GEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH--HHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH--HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 45567799999999999999999999999999865432222 22221111 22355567777664
No 144
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=23.63 E-value=96 Score=28.55 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLA 41 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~ 41 (646)
|.|++.+.+|...+..+|++.+-..+.||+.+.
T Consensus 31 dgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii 63 (145)
T 1vh6_A 31 NGCLKFIRLAAQAIENDDMERKNENLIKAQNII 63 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999875
No 145
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=23.63 E-value=4.9e+02 Score=24.90 Aligned_cols=36 Identities=11% Similarity=-0.040 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
+.-+..+|..++..+++..|...+.++..+.|....
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 455677888889999999999999999999988643
No 146
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.75 E-value=20 Score=26.75 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=22.7
Q ss_pred eccccch-hhHHHHhhccceeecCCCCCceeeeecc
Q 006401 156 ACSRCRL-LHQFERKYLDQILVCPGCKMSFEAVEAK 190 (646)
Q Consensus 156 ~C~~C~~-~yey~r~y~~~~l~C~~C~~~f~A~e~~ 190 (646)
.|+.|+. ...|. +....+.|..|+..|..-.+.
T Consensus 7 ~CP~C~~~~l~~d--~~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 7 VCPACESAELIYD--PERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp SCTTTSCCCEEEE--TTTTEEEESSSCCBCCCCCCC
T ss_pred eCcCCCCcceEEc--CCCCeEECcccCCcccccccc
Confidence 5999988 43332 234568999999988755443
No 147
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=22.50 E-value=1.9e+02 Score=22.64 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHh
Q 006401 13 RLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEG 46 (646)
Q Consensus 13 r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~ 46 (646)
-+..+|..++..+++..|...+.++..+.|....
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 3455778888999999999999999999998643
No 148
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.35 E-value=1.9e+02 Score=28.02 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCh
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSL 44 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l 44 (646)
|.-+..++..+...+++..|...+.+|..++|..
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4444556666667777777777777777776654
No 149
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=22.27 E-value=5.1e+02 Score=24.97 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHHHHHhcCCcChhhhhcCCCCCCHHHHHHHHHHhHH
Q 006401 11 ASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKILRVASKSKEWYQILQVEPFSHINTIKKQYKKLAL 90 (646)
Q Consensus 11 A~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v~~a~~~~~d~Y~ILgV~~~As~~eIKkaYrklal 90 (646)
+..+..+|..++..+++..|..++.++..++|....+-..+..+ |.-+| ..++-...|++ ++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~------------~~~~g-----~~~~A~~~~~~-al 126 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT------------QAENE-----NEQAAIVALQR-CL 126 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTT-----CHHHHHHHHHH-HH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH------------HHHCC-----CHHHHHHHHHH-HH
Confidence 34478889999999999999999999999999875433222221 11122 23334444444 44
Q ss_pred hhCCCCCCCCchHHHHHHHHHHHHHhcCc
Q 006401 91 ILHPDKNPHSGSEEAFKLVGEAFRVLSDK 119 (646)
Q Consensus 91 ~~HPDKn~~~~a~~~F~~I~eAy~vLsDp 119 (646)
..+|+. ...+..+..+|..+++.
T Consensus 127 ~~~p~~------~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 127 ELQPNN------LKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred hcCCCC------HHHHHHHHHHHHccccH
Confidence 556653 34566677777776654
No 150
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=21.63 E-value=2.9e+02 Score=28.69 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHH--------HHHhc-CCcChhhhhcCCCCCCHHHHHHHH
Q 006401 15 KGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKI--------LRVAS-KSKEWYQILQVEPFSHINTIKKQY 85 (646)
Q Consensus 15 ~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v--------~~a~~-~~~d~Y~ILgV~~~As~~eIKkaY 85 (646)
...++..+..+++..|...+.++...+|-.|.+...|-.+-. +..-. -..-+.+=||++|. .+++..|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~---~~l~~l~ 251 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG---PTLRALN 251 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC---HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC---HHHHHHH
Confidence 346788899999999999999999999999876554432211 00000 11234556899886 5567777
Q ss_pred HHhHH
Q 006401 86 KKLAL 90 (646)
Q Consensus 86 rklal 90 (646)
+++..
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77644
No 151
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=21.60 E-value=2e+02 Score=25.90 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred hhcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHHHH
Q 006401 5 PEAEREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAFKI 56 (646)
Q Consensus 5 ~~~~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~~v 56 (646)
|..+.+. +-.+|-.+++.++|..|++++....+..|....+..|...++-
T Consensus 70 p~~~Rd~--lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~ 119 (126)
T 1nzn_A 70 KEEQRDY--VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 119 (126)
T ss_dssp HHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cchHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3344444 3456777889999999999999999999998877777776654
No 152
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=21.05 E-value=20 Score=27.18 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=21.8
Q ss_pred eeccccchhhHHHHhhccceeecCCCCCceeeee
Q 006401 155 TACSRCRLLHQFERKYLDQILVCPGCKMSFEAVE 188 (646)
Q Consensus 155 t~C~~C~~~yey~r~y~~~~l~C~~C~~~f~A~e 188 (646)
+.|-+|+..+....-..--.+.|+.|+--.+...
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 3588888876554433334678999987666543
No 153
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=21.05 E-value=5.5e+02 Score=29.20 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 10 EASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 10 eA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
.|.-+..+|..++..+++++|...+++|.++.|....+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a 45 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 45 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 35566778888999999999999999999999997543
No 154
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.91 E-value=91 Score=31.00 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=32.8
Q ss_pred CchhhHHHHHHhhhhhcccccccCCCCCCCCCccceeeeccccchh--hH-HHHhh-ccceeecCCCCCceeee
Q 006401 118 DKVRRKEYDMRLRIKIQDEKVALDDNDDGFAGKETFWTACSRCRLL--HQ-FERKY-LDQILVCPGCKMSFEAV 187 (646)
Q Consensus 118 Dp~kR~~YD~~~~~~~~~~~~~~~~~~~~~~~~~tFwt~C~~C~~~--ye-y~r~y-~~~~l~C~~C~~~f~A~ 187 (646)
++..-..|+.-+......+.+. ..-..|.+|.+. .+ |.... -...+.|++|++-++-.
T Consensus 174 ~~~lL~~Yerir~~~~g~avv~------------v~~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 174 EPKIYSFYERIRRWAKNTSIVT------------IKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAE 235 (256)
T ss_dssp CHHHHHHHHHHHHHHGGGSEEE------------CBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECS
T ss_pred CHHHHHHHHHHHHhCCCceEEE------------eeCCccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEeC
Confidence 5667788887765321111111 112358889873 22 22222 24578999999988754
No 155
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=20.71 E-value=2.1e+02 Score=26.24 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhH
Q 006401 9 REASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGL 47 (646)
Q Consensus 9 deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i 47 (646)
..+.-+..+|..++..+++..|...+.+|..++|....+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 79 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence 346666778999999999999999999999999986543
No 156
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=20.51 E-value=58 Score=28.87 Aligned_cols=41 Identities=10% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAF 54 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~ 54 (646)
++..|..++..+++.+|...+.++..+.|....+.-.+..+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 49 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADC 49 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.50 E-value=1.4e+02 Score=24.41 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCChH
Q 006401 8 EREASRLKGIAETKFKNSNLKSALKHAKKAQRLAPSLE 45 (646)
Q Consensus 8 ~deA~r~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~ 45 (646)
...|.-+..+|..++..+++..|...+.+|..+.+...
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 43 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 43 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC
Confidence 44566778899999999999999999999999987654
No 158
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=20.02 E-value=1.6e+02 Score=26.63 Aligned_cols=41 Identities=12% Similarity=-0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCChHhHHhhHHHH
Q 006401 14 LKGIAETKFKNSNLKSALKHAKKAQRLAPSLEGLSSMVTAF 54 (646)
Q Consensus 14 ~~~iAe~~l~~~d~~gA~r~a~kA~~l~P~l~~i~qll~~~ 54 (646)
+..+|..++..+++..|...+.+|..+.|....+-..+..+
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 45 AYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Done!