Query 006403
Match_columns 646
No_of_seqs 438 out of 2864
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 22:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02881 tetrahydrofolylpolygl 100.0 4E-108 8E-113 910.5 51.9 524 77-646 4-530 (530)
2 KOG2525 Folylpolyglutamate syn 100.0 5E-104 1E-108 849.0 40.2 474 84-646 16-494 (496)
3 COG0285 FolC Folylpolyglutamat 100.0 1.1E-81 2.3E-86 684.1 42.9 404 87-645 2-422 (427)
4 PLN02913 dihydrofolate synthet 100.0 2.3E-78 4.9E-83 677.7 45.9 446 87-645 24-509 (510)
5 TIGR01499 folC folylpolyglutam 100.0 2.1E-73 4.6E-78 619.6 42.2 381 118-644 1-397 (397)
6 PRK10846 bifunctional folylpol 100.0 2.7E-68 5.8E-73 583.6 42.8 392 88-645 12-415 (416)
7 PRK00139 murE UDP-N-acetylmura 100.0 1.1E-46 2.3E-51 417.9 34.8 351 24-523 14-386 (460)
8 PRK11929 putative bifunctional 100.0 3.7E-44 8.1E-49 429.1 35.8 355 26-522 30-420 (958)
9 PRK14022 UDP-N-acetylmuramoyla 100.0 1.2E-42 2.6E-47 387.6 35.9 326 24-498 33-382 (481)
10 TIGR01085 murE UDP-N-acetylmur 100.0 2.5E-42 5.4E-47 383.1 33.4 356 26-523 5-395 (464)
11 TIGR01143 murF UDP-N-acetylmur 100.0 4.4E-41 9.5E-46 368.6 31.2 329 30-523 1-365 (417)
12 TIGR02068 cya_phycin_syn cyano 100.0 1.2E-39 2.5E-44 385.3 37.7 289 120-523 462-794 (864)
13 COG0769 MurE UDP-N-acetylmuram 100.0 1.4E-38 3E-43 353.2 31.6 351 26-523 11-396 (475)
14 PRK10773 murF UDP-N-acetylmura 100.0 7.8E-38 1.7E-42 346.6 30.6 337 25-521 24-392 (453)
15 PRK14093 UDP-N-acetylmuramoyla 100.0 7.5E-38 1.6E-42 349.0 29.9 348 24-521 27-408 (479)
16 PRK11929 putative bifunctional 100.0 1.2E-36 2.6E-41 364.5 31.5 344 21-521 522-902 (958)
17 PRK01438 murD UDP-N-acetylmura 100.0 9.8E-36 2.1E-40 331.4 32.9 251 135-521 120-400 (480)
18 PRK11930 putative bifunctional 100.0 1.6E-35 3.4E-40 349.7 28.6 345 25-521 24-398 (822)
19 PRK01390 murD UDP-N-acetylmura 100.0 1.5E-34 3.3E-39 320.4 30.3 213 136-432 113-351 (460)
20 PRK03803 murD UDP-N-acetylmura 100.0 5E-34 1.1E-38 315.3 32.2 209 138-435 109-340 (448)
21 COG0770 MurF UDP-N-acetylmuram 100.0 1.3E-33 2.8E-38 310.9 34.2 340 23-523 22-396 (451)
22 PRK04308 murD UDP-N-acetylmura 100.0 1.3E-33 2.8E-38 311.8 32.0 212 137-433 110-340 (445)
23 PRK02705 murD UDP-N-acetylmura 100.0 1E-33 2.2E-38 313.3 30.3 250 137-521 109-382 (459)
24 PRK00421 murC UDP-N-acetylmura 100.0 9.8E-34 2.1E-38 314.3 29.9 213 138-437 108-347 (461)
25 PRK03806 murD UDP-N-acetylmura 100.0 1.6E-33 3.5E-38 310.3 29.6 210 137-434 105-334 (438)
26 TIGR01081 mpl UDP-N-acetylmura 100.0 1.1E-32 2.3E-37 304.9 30.1 215 138-437 103-346 (448)
27 PRK14106 murD UDP-N-acetylmura 100.0 1.7E-32 3.6E-37 302.7 31.2 212 137-434 108-345 (450)
28 PRK02006 murD UDP-N-acetylmura 100.0 2.2E-32 4.8E-37 306.3 32.0 232 117-433 103-385 (498)
29 TIGR01087 murD UDP-N-acetylmur 100.0 3.2E-32 7E-37 299.4 31.7 210 137-433 102-329 (433)
30 PRK03369 murD UDP-N-acetylmura 100.0 7.7E-33 1.7E-37 309.5 24.9 245 138-522 118-384 (488)
31 PRK14573 bifunctional D-alanyl 100.0 2.1E-32 4.4E-37 322.8 26.9 256 138-523 105-380 (809)
32 PRK02472 murD UDP-N-acetylmura 100.0 1.4E-31 3E-36 295.1 30.8 210 137-432 108-339 (447)
33 TIGR01082 murC UDP-N-acetylmur 100.0 6E-31 1.3E-35 291.0 32.7 216 138-437 100-341 (448)
34 PRK01368 murD UDP-N-acetylmura 100.0 3.9E-31 8.6E-36 293.3 28.7 213 137-434 104-341 (454)
35 PRK04690 murD UDP-N-acetylmura 100.0 3.1E-31 6.7E-36 295.2 25.8 238 138-505 116-371 (468)
36 PRK00141 murD UDP-N-acetylmura 100.0 1.2E-30 2.7E-35 290.7 26.5 243 138-521 122-389 (473)
37 COG0771 MurD UDP-N-acetylmuram 100.0 2.2E-30 4.9E-35 283.5 23.3 251 136-491 109-379 (448)
38 COG0773 MurC UDP-N-acetylmuram 100.0 1.9E-28 4.1E-33 266.4 31.6 254 137-521 107-388 (459)
39 PRK04663 murD UDP-N-acetylmura 100.0 3.2E-29 6.9E-34 276.7 26.0 208 137-434 108-335 (438)
40 PRK01710 murD UDP-N-acetylmura 100.0 1.3E-28 2.9E-33 273.3 24.8 247 137-523 117-385 (458)
41 PRK00683 murD UDP-N-acetylmura 100.0 9.8E-28 2.1E-32 263.4 26.2 204 137-432 102-309 (418)
42 PRK03815 murD UDP-N-acetylmura 99.9 4.7E-24 1E-28 233.4 28.0 196 138-432 90-294 (401)
43 PRK14016 cyanophycin synthetas 99.9 3.1E-24 6.8E-29 250.1 20.9 219 121-393 464-726 (727)
44 PF08245 Mur_ligase_M: Mur lig 99.9 1.4E-23 3E-28 205.2 16.3 161 142-351 1-188 (188)
45 PF02875 Mur_ligase_C: Mur lig 99.2 3.6E-11 7.8E-16 104.9 8.0 78 387-523 1-81 (91)
46 COG1703 ArgK Putative periplas 97.5 0.00052 1.1E-08 72.4 10.0 141 137-300 51-201 (323)
47 PF03308 ArgK: ArgK protein; 96.2 0.027 6E-07 58.8 9.8 162 120-306 14-186 (266)
48 TIGR00750 lao LAO/AO transport 95.8 0.13 2.8E-06 54.7 13.1 48 121-170 20-69 (300)
49 PRK09435 membrane ATPase/prote 93.9 0.25 5.5E-06 53.6 9.2 47 122-170 43-91 (332)
50 PRK13869 plasmid-partitioning 93.1 0.59 1.3E-05 52.0 10.5 110 59-169 22-156 (405)
51 PHA02519 plasmid partition pro 92.4 0.63 1.4E-05 51.5 9.6 54 116-169 82-141 (387)
52 COG1072 CoaA Panthothenate kin 92.0 2.3 5.1E-05 45.0 12.5 94 121-237 67-164 (283)
53 PRK13705 plasmid-partitioning 90.7 0.47 1E-05 52.5 6.3 54 116-169 82-141 (388)
54 PRK01077 cobyrinic acid a,c-di 89.6 0.88 1.9E-05 51.3 7.5 35 137-171 3-40 (451)
55 cd03114 ArgK-like The function 88.7 2.4 5.2E-05 40.5 8.7 58 230-297 88-146 (148)
56 COG1763 MobB Molybdopterin-gua 87.6 0.68 1.5E-05 45.3 4.2 37 137-173 2-40 (161)
57 TIGR03453 partition_RepA plasm 87.5 3.5 7.5E-05 45.5 10.2 37 133-169 100-139 (387)
58 COG0489 Mrp ATPases involved i 87.2 1.5 3.3E-05 46.0 6.9 34 136-169 56-92 (265)
59 TIGR03172 probable selenium-de 86.8 0.66 1.4E-05 47.9 3.8 37 139-175 1-37 (232)
60 TIGR03029 EpsG chain length de 85.5 1.5 3.3E-05 45.5 5.9 52 118-169 84-138 (274)
61 cd01983 Fer4_NifH The Fer4_Nif 84.2 1.2 2.6E-05 37.2 3.7 31 140-170 2-34 (99)
62 TIGR03018 pepcterm_TyrKin exop 84.2 2.4 5.1E-05 42.4 6.3 37 133-169 31-71 (207)
63 TIGR01007 eps_fam capsular exo 83.9 1.8 4E-05 42.8 5.4 33 137-169 17-52 (204)
64 TIGR00064 ftsY signal recognit 83.5 3.1 6.8E-05 43.8 7.1 36 136-171 71-108 (272)
65 PRK10416 signal recognition pa 82.4 5.3 0.00012 43.2 8.5 35 137-171 114-150 (318)
66 PRK00652 lpxK tetraacyldisacch 80.7 3.7 8.1E-05 44.5 6.6 51 120-170 31-86 (325)
67 cd02040 NifH NifH gene encodes 80.5 1.8 3.9E-05 44.5 4.0 32 138-169 2-35 (270)
68 PHA02518 ParA-like protein; Pr 79.1 2.3 5E-05 41.8 4.1 31 139-169 2-35 (211)
69 cd02035 ArsA ArsA ATPase funct 78.8 12 0.00025 37.8 9.1 95 144-244 8-124 (217)
70 TIGR03371 cellulose_yhjQ cellu 78.6 2.3 5.1E-05 43.0 4.1 32 138-169 2-36 (246)
71 COG2403 Predicted GTPase [Gene 78.4 3.3 7.1E-05 45.6 5.2 37 137-173 126-165 (449)
72 PF03205 MobB: Molybdopterin g 78.4 2.3 5.1E-05 40.3 3.7 36 138-173 1-38 (140)
73 COG1618 Predicted nucleotide k 78.3 2.8 6.1E-05 41.2 4.2 35 139-173 7-43 (179)
74 PRK05439 pantothenate kinase; 77.7 30 0.00065 37.4 12.2 34 137-170 86-123 (311)
75 PRK13896 cobyrinic acid a,c-di 77.4 8.8 0.00019 43.3 8.5 33 139-171 3-38 (433)
76 PRK13235 nifH nitrogenase redu 77.2 2.7 5.8E-05 43.8 4.1 32 138-169 2-35 (274)
77 PF00448 SRP54: SRP54-type pro 76.9 2 4.4E-05 43.0 3.0 31 140-171 7-37 (196)
78 KOG0780 Signal recognition par 76.3 7.6 0.00016 43.1 7.2 83 137-242 101-192 (483)
79 PRK14494 putative molybdopteri 76.0 3.1 6.6E-05 43.0 4.0 37 137-173 1-39 (229)
80 COG0132 BioD Dethiobiotin synt 75.8 3 6.5E-05 42.9 3.9 34 137-170 2-38 (223)
81 PRK14974 cell division protein 75.8 5.4 0.00012 43.5 6.1 35 137-171 140-176 (336)
82 cd02117 NifH_like This family 75.3 3.3 7.2E-05 41.4 4.0 31 139-169 2-34 (212)
83 PRK05632 phosphate acetyltrans 74.9 20 0.00044 42.7 11.1 34 139-173 4-40 (684)
84 PRK13232 nifH nitrogenase redu 74.6 3.4 7.3E-05 43.1 4.0 32 138-169 2-35 (273)
85 TIGR00554 panK_bact pantothena 73.6 25 0.00054 37.6 10.3 26 137-162 62-89 (290)
86 TIGR03815 CpaE_hom_Actino heli 71.8 8.5 0.00018 41.2 6.3 48 121-169 78-128 (322)
87 PF13500 AAA_26: AAA domain; P 71.4 3.9 8.5E-05 40.4 3.4 32 139-170 2-36 (199)
88 PRK15453 phosphoribulokinase; 70.9 5 0.00011 42.9 4.2 33 136-168 4-38 (290)
89 PRK06761 hypothetical protein; 70.7 31 0.00067 36.8 10.1 58 138-197 4-63 (282)
90 PRK14495 putative molybdopteri 69.9 5.2 0.00011 45.1 4.3 37 137-173 1-39 (452)
91 PRK10037 cell division protein 69.8 5.2 0.00011 41.1 4.0 32 138-169 2-36 (250)
92 CHL00175 minD septum-site dete 69.1 5.3 0.00012 41.6 4.0 32 138-169 16-50 (281)
93 TIGR01968 minD_bact septum sit 69.1 5.6 0.00012 40.4 4.1 32 138-169 2-36 (261)
94 PRK11670 antiporter inner memb 68.9 5.4 0.00012 44.0 4.1 33 137-169 107-142 (369)
95 COG1663 LpxK Tetraacyldisaccha 68.2 12 0.00025 40.9 6.4 52 120-173 32-87 (336)
96 TIGR01287 nifH nitrogenase iro 68.2 5.4 0.00012 41.5 3.8 31 139-169 2-34 (275)
97 cd03116 MobB Molybdenum is an 68.0 6.6 0.00014 38.1 4.1 34 138-171 2-37 (159)
98 PRK12374 putative dithiobiotin 67.8 6.2 0.00013 40.3 4.0 32 139-170 4-38 (231)
99 COG1797 CobB Cobyrinic acid a, 67.4 14 0.0003 41.6 6.9 28 140-167 3-33 (451)
100 cd02033 BchX Chlorophyllide re 67.2 7.2 0.00016 42.4 4.6 37 133-169 27-65 (329)
101 COG2894 MinD Septum formation 66.9 7.3 0.00016 40.3 4.2 32 138-169 3-37 (272)
102 PRK13234 nifH nitrogenase redu 66.8 6.6 0.00014 41.7 4.2 34 136-169 3-38 (295)
103 cd02032 Bchl_like This family 66.7 6.5 0.00014 40.7 4.0 31 139-169 2-34 (267)
104 TIGR00682 lpxK tetraacyldisacc 66.6 13 0.00029 40.0 6.5 38 136-173 27-68 (311)
105 PRK00784 cobyric acid synthase 66.3 5.4 0.00012 45.5 3.6 34 138-171 3-39 (488)
106 PRK13849 putative crown gall t 66.3 6.9 0.00015 40.2 4.1 32 138-169 2-36 (231)
107 TIGR02016 BchX chlorophyllide 66.0 6.6 0.00014 41.9 4.0 31 139-169 2-34 (296)
108 PRK13185 chlL protochlorophyll 65.1 7.2 0.00016 40.4 4.0 32 138-169 3-36 (270)
109 PRK07667 uridine kinase; Provi 65.1 13 0.00029 36.8 5.7 36 138-173 18-55 (193)
110 COG0572 Udk Uridine kinase [Nu 65.0 11 0.00025 38.6 5.2 53 135-189 6-66 (218)
111 TIGR02880 cbbX_cfxQ probable R 64.5 16 0.00035 38.6 6.5 43 122-165 44-88 (284)
112 PRK14493 putative bifunctional 64.4 7.7 0.00017 41.1 4.1 34 137-171 1-36 (274)
113 PRK13230 nitrogenase reductase 64.3 7.3 0.00016 40.7 3.9 32 138-169 2-35 (279)
114 PRK13236 nitrogenase reductase 64.0 8.7 0.00019 40.8 4.5 35 135-169 4-40 (296)
115 PRK09841 cryptic autophosphory 63.7 12 0.00026 44.9 6.0 35 135-169 529-566 (726)
116 PRK13233 nifH nitrogenase redu 62.8 8.6 0.00019 40.0 4.1 32 138-169 3-37 (275)
117 PRK00090 bioD dithiobiotin syn 62.7 8 0.00017 38.8 3.7 31 140-170 2-35 (222)
118 PF01656 CbiA: CobQ/CobB/MinD/ 62.3 7.3 0.00016 37.5 3.2 32 139-170 3-34 (195)
119 PRK11519 tyrosine kinase; Prov 62.3 14 0.0003 44.4 6.1 49 121-169 510-561 (719)
120 TIGR01969 minD_arch cell divis 61.7 9.7 0.00021 38.5 4.1 31 139-169 2-35 (251)
121 TIGR00176 mobB molybdopterin-g 61.5 8.5 0.00018 37.1 3.5 33 139-171 1-35 (155)
122 PRK14489 putative bifunctional 61.1 17 0.00036 40.0 6.1 57 116-173 185-243 (366)
123 PLN02796 D-glycerate 3-kinase 60.7 12 0.00026 41.0 4.8 43 138-192 101-145 (347)
124 COG0552 FtsY Signal recognitio 60.6 10 0.00022 41.3 4.2 33 136-168 138-172 (340)
125 cd02036 MinD Bacterial cell di 60.2 8.8 0.00019 36.5 3.3 29 141-169 6-34 (179)
126 PLN03046 D-glycerate 3-kinase; 60.1 14 0.00029 41.9 5.1 46 137-194 212-259 (460)
127 cd02029 PRK_like Phosphoribulo 60.0 9 0.0002 40.7 3.6 31 139-169 1-33 (277)
128 cd02025 PanK Pantothenate kina 59.9 8.9 0.00019 39.0 3.5 30 139-168 1-34 (220)
129 cd02037 MRP-like MRP (Multiple 59.9 11 0.00025 36.0 4.1 26 144-169 9-34 (169)
130 COG1936 Predicted nucleotide k 59.5 7.7 0.00017 38.6 2.8 24 139-166 2-27 (180)
131 KOG3022 Predicted ATPase, nucl 59.4 12 0.00025 40.0 4.2 44 138-181 48-101 (300)
132 PRK01906 tetraacyldisaccharide 59.1 22 0.00047 38.9 6.4 52 120-171 38-94 (338)
133 PF00485 PRK: Phosphoribulokin 58.7 8.6 0.00019 37.9 3.1 27 139-165 1-29 (194)
134 PF13614 AAA_31: AAA domain; P 58.6 12 0.00025 35.0 3.8 32 138-169 1-35 (157)
135 PRK00771 signal recognition pa 58.3 19 0.00041 40.8 6.0 35 137-171 95-131 (437)
136 PF09140 MipZ: ATPase MipZ; I 58.2 9.7 0.00021 40.0 3.4 31 139-169 2-35 (261)
137 COG0541 Ffh Signal recognition 57.5 28 0.00062 39.2 7.0 34 138-171 101-136 (451)
138 PF02606 LpxK: Tetraacyldisacc 57.4 30 0.00065 37.6 7.2 54 120-173 17-75 (326)
139 cd02028 UMPK_like Uridine mono 57.0 12 0.00026 36.8 3.7 32 139-170 1-34 (179)
140 PRK13231 nitrogenase reductase 56.7 6.3 0.00014 40.7 1.8 31 138-169 3-35 (264)
141 TIGR01425 SRP54_euk signal rec 55.9 22 0.00048 40.1 6.0 35 137-171 100-136 (429)
142 PRK13886 conjugal transfer pro 55.9 1.1E+02 0.0024 32.0 10.7 27 143-169 11-37 (241)
143 TIGR03499 FlhF flagellar biosy 55.2 21 0.00046 37.7 5.5 36 136-171 193-232 (282)
144 PRK10818 cell division inhibit 55.1 14 0.00029 38.3 4.0 32 138-169 3-37 (270)
145 PF07015 VirC1: VirC1 protein; 54.5 15 0.00033 38.1 4.1 33 138-170 2-37 (231)
146 TIGR00313 cobQ cobyric acid sy 54.2 10 0.00022 43.2 3.1 31 142-172 3-36 (475)
147 TIGR00379 cobB cobyrinic acid 54.0 13 0.00028 42.1 3.8 28 143-170 7-35 (449)
148 KOG3347 Predicted nucleotide k 52.5 12 0.00026 36.6 2.7 25 135-159 5-31 (176)
149 TIGR01281 DPOR_bchL light-inde 52.1 12 0.00025 38.8 2.9 27 143-169 8-34 (268)
150 cd03109 DTBS Dethiobiotin synt 51.9 12 0.00027 34.9 2.7 25 146-170 10-34 (134)
151 PF05378 Hydant_A_N: Hydantoin 51.7 36 0.00078 33.6 6.1 27 150-176 63-89 (176)
152 PF01225 Mur_ligase: Mur ligas 51.6 2.6 5.7E-05 35.7 -1.7 43 26-76 3-45 (83)
153 PRK11889 flhF flagellar biosyn 51.4 28 0.00061 39.2 5.8 34 138-171 242-277 (436)
154 COG4240 Predicted kinase [Gene 51.0 32 0.00068 36.0 5.6 35 135-169 48-85 (300)
155 PF06564 YhjQ: YhjQ protein; 50.4 15 0.00033 38.3 3.4 29 139-167 6-34 (243)
156 PRK10751 molybdopterin-guanine 50.4 19 0.00041 35.6 3.9 36 136-171 5-42 (173)
157 COG4615 PvdE ABC-type sideroph 50.0 10 0.00022 42.4 2.1 45 136-195 348-394 (546)
158 PRK06995 flhF flagellar biosyn 49.7 33 0.00073 39.3 6.2 34 137-170 256-293 (484)
159 cd02042 ParA ParA and ParB of 49.1 20 0.00043 31.2 3.5 31 139-169 4-34 (104)
160 PRK14491 putative bifunctional 48.2 20 0.00044 42.1 4.4 38 136-173 9-48 (597)
161 TIGR01005 eps_transp_fam exopo 46.0 34 0.00073 41.1 5.9 35 135-169 544-581 (754)
162 cd00550 ArsA_ATPase Oxyanion-t 45.3 64 0.0014 33.5 7.1 28 144-171 9-36 (254)
163 CHL00072 chlL photochlorophyll 45.2 18 0.00039 38.4 3.1 30 140-169 3-34 (290)
164 PF10662 PduV-EutP: Ethanolami 44.7 1.2E+02 0.0026 29.2 8.2 72 231-308 61-139 (143)
165 TIGR00347 bioD dethiobiotin sy 44.5 20 0.00044 34.1 3.0 24 146-169 9-32 (166)
166 PRK12723 flagellar biosynthesi 44.3 39 0.00085 37.7 5.6 34 138-171 175-214 (388)
167 cd01672 TMPK Thymidine monopho 43.8 31 0.00068 33.1 4.3 34 139-172 2-37 (200)
168 PRK14721 flhF flagellar biosyn 43.4 44 0.00095 37.7 5.9 39 135-173 189-231 (420)
169 PRK10867 signal recognition pa 43.2 41 0.00088 38.1 5.6 35 137-171 100-137 (433)
170 COG1419 FlhF Flagellar GTP-bin 43.2 26 0.00057 39.2 4.0 36 138-173 204-243 (407)
171 PRK05703 flhF flagellar biosyn 42.7 37 0.00079 38.3 5.1 34 138-171 222-259 (424)
172 COG0003 ArsA Predicted ATPase 40.7 1.9E+02 0.0041 31.5 10.0 104 138-241 3-133 (322)
173 cd02034 CooC The accessory pro 40.6 29 0.00063 31.7 3.3 27 144-170 8-34 (116)
174 PRK09270 nucleoside triphospha 39.8 53 0.0012 33.3 5.4 31 136-166 32-64 (229)
175 PF02374 ArsA_ATPase: Anion-tr 39.8 34 0.00074 36.7 4.1 33 139-171 3-37 (305)
176 PRK12377 putative replication 39.3 26 0.00056 36.6 3.1 33 140-173 107-139 (248)
177 PRK06696 uridine kinase; Valid 38.5 73 0.0016 32.2 6.1 31 137-167 22-54 (223)
178 COG1474 CDC6 Cdc6-related prot 37.8 1.5E+02 0.0031 32.9 8.8 58 132-205 41-98 (366)
179 cd03111 CpaE_like This protein 37.8 33 0.00072 30.5 3.2 27 143-169 8-35 (106)
180 TIGR00959 ffh signal recogniti 37.7 57 0.0012 36.9 5.7 34 138-171 100-136 (428)
181 COG3954 PrkB Phosphoribulokina 37.4 23 0.0005 36.0 2.2 30 135-164 3-34 (289)
182 PLN02974 adenosylmethionine-8- 36.5 35 0.00077 41.7 4.0 34 136-169 26-62 (817)
183 PF13207 AAA_17: AAA domain; P 36.3 26 0.00056 31.2 2.2 25 139-166 1-27 (121)
184 KOG4300 Predicted methyltransf 35.7 77 0.0017 32.8 5.6 52 179-244 35-86 (252)
185 TIGR00073 hypB hydrogenase acc 34.3 2.2E+02 0.0048 28.2 8.8 35 135-170 20-56 (207)
186 COG3640 CooC CO dehydrogenase 34.2 35 0.00075 35.7 3.0 28 139-166 2-32 (255)
187 COG3367 Uncharacterized conser 34.0 60 0.0013 35.4 4.8 39 133-171 144-185 (339)
188 PRK03846 adenylylsulfate kinas 34.0 59 0.0013 32.1 4.6 29 138-166 25-55 (198)
189 COG1192 Soj ATPases involved i 33.9 39 0.00084 34.6 3.4 31 138-168 3-37 (259)
190 PF07755 DUF1611: Protein of u 33.5 47 0.001 35.8 3.9 37 136-172 111-150 (301)
191 PRK12726 flagellar biosynthesi 33.4 51 0.0011 36.9 4.3 36 136-171 205-242 (407)
192 TIGR00455 apsK adenylylsulfate 33.0 65 0.0014 31.2 4.6 31 138-168 19-51 (184)
193 PF08497 Radical_SAM_N: Radica 32.8 59 0.0013 34.9 4.4 48 122-173 6-56 (302)
194 PF10673 DUF2487: Protein of u 31.4 1.4E+02 0.003 28.8 6.3 78 415-527 18-98 (142)
195 PRK13507 formate--tetrahydrofo 31.3 2.2E+02 0.0048 33.4 8.9 86 234-319 314-435 (587)
196 PRK06835 DNA replication prote 31.2 41 0.00089 36.6 3.1 38 135-173 184-221 (329)
197 COG0125 Tmk Thymidylate kinase 31.2 27 0.00058 35.6 1.6 36 138-173 4-41 (208)
198 PF06418 CTP_synth_N: CTP synt 30.6 46 0.00099 35.3 3.2 32 138-169 2-37 (276)
199 PRK12724 flagellar biosynthesi 29.8 59 0.0013 36.8 4.1 34 138-171 224-260 (432)
200 TIGR03708 poly_P_AMP_trns poly 29.4 1.8E+02 0.0039 33.6 7.9 53 138-205 41-95 (493)
201 TIGR00041 DTMP_kinase thymidyl 29.3 74 0.0016 30.9 4.4 31 138-168 4-36 (195)
202 cd02023 UMPK Uridine monophosp 28.9 54 0.0012 32.1 3.3 30 139-170 1-32 (198)
203 cd00477 FTHFS Formyltetrahydro 28.6 89 0.0019 36.1 5.2 33 137-169 38-76 (524)
204 cd00477 FTHFS Formyltetrahydro 28.2 2E+02 0.0043 33.4 7.9 87 234-320 276-391 (524)
205 PRK14723 flhF flagellar biosyn 28.2 1.1E+02 0.0024 37.2 6.2 34 138-171 186-223 (767)
206 PRK07414 cob(I)yrinic acid a,c 27.8 80 0.0017 31.5 4.2 31 138-168 22-54 (178)
207 COG0529 CysC Adenylylsulfate k 27.8 46 0.001 33.5 2.5 29 138-166 24-54 (197)
208 PLN02924 thymidylate kinase 27.6 86 0.0019 32.0 4.6 36 133-168 12-49 (220)
209 PRK13505 formate--tetrahydrofo 27.6 2.3E+02 0.005 33.2 8.4 86 234-321 293-408 (557)
210 cd03113 CTGs CTP synthetase (C 27.5 79 0.0017 33.3 4.3 30 139-168 2-35 (255)
211 cd03115 SRP The signal recogni 27.4 52 0.0011 31.5 2.8 33 139-171 2-36 (173)
212 PRK07933 thymidylate kinase; V 26.7 83 0.0018 31.8 4.2 34 139-172 2-37 (213)
213 TIGR02881 spore_V_K stage V sp 26.2 77 0.0017 32.8 4.0 24 139-163 47-70 (261)
214 COG5623 CLP1 Predicted GTPase 26.1 1.3E+02 0.0028 32.8 5.6 44 122-166 85-130 (424)
215 COG0504 PyrG CTP synthase (UTP 26.0 81 0.0018 36.2 4.3 32 138-169 2-37 (533)
216 PRK08181 transposase; Validate 25.9 48 0.001 35.0 2.4 38 134-172 106-143 (269)
217 KOG2749 mRNA cleavage and poly 25.7 92 0.002 34.6 4.5 29 138-166 105-134 (415)
218 cd00561 CobA_CobO_BtuR ATP:cor 25.7 98 0.0021 30.2 4.4 30 139-168 4-35 (159)
219 COG1125 OpuBA ABC-type proline 25.5 36 0.00077 36.2 1.3 39 139-192 29-69 (309)
220 PF01583 APS_kinase: Adenylyls 25.2 91 0.002 30.4 4.0 33 138-170 3-37 (156)
221 cd02019 NK Nucleoside/nucleoti 25.0 83 0.0018 25.7 3.2 31 139-171 1-33 (69)
222 COG4152 ABC-type uncharacteriz 24.9 36 0.00079 36.0 1.2 40 138-192 29-70 (300)
223 PRK08233 hypothetical protein; 24.8 48 0.001 31.6 2.0 23 138-160 4-28 (182)
224 TIGR00708 cobA cob(I)alamin ad 24.6 1E+02 0.0022 30.6 4.3 31 138-168 6-38 (173)
225 COG4138 BtuD ABC-type cobalami 23.8 1E+02 0.0022 31.2 4.1 44 137-194 25-68 (248)
226 PLN02759 Formate--tetrahydrofo 23.5 4E+02 0.0086 31.7 9.2 35 150-193 265-306 (637)
227 PRK13695 putative NTPase; Prov 23.4 91 0.002 30.0 3.7 28 140-167 3-32 (174)
228 PRK10536 hypothetical protein; 23.4 1.2E+02 0.0027 32.0 4.9 66 138-206 75-144 (262)
229 PF11964 SpoIIAA-like: SpoIIAA 23.3 4E+02 0.0087 23.0 7.6 25 414-438 3-27 (109)
230 CHL00181 cbbX CbbX; Provisiona 23.3 83 0.0018 33.4 3.7 40 124-164 47-88 (287)
231 PRK01254 hypothetical protein; 23.2 74 0.0016 38.0 3.5 56 117-176 24-82 (707)
232 PF01268 FTHFS: Formate--tetra 23.0 1E+02 0.0022 35.9 4.5 41 124-167 44-90 (557)
233 PRK00889 adenylylsulfate kinas 22.9 1.2E+02 0.0026 29.1 4.4 31 138-168 5-37 (175)
234 PF03029 ATP_bind_1: Conserved 22.8 50 0.0011 34.1 1.8 28 140-168 2-29 (238)
235 PRK05480 uridine/cytidine kina 22.7 1E+02 0.0022 30.5 4.0 24 136-159 5-30 (209)
236 PRK00698 tmk thymidylate kinas 22.5 1.2E+02 0.0025 29.5 4.3 31 138-168 4-36 (205)
237 PRK05986 cob(I)alamin adenolsy 22.3 1.1E+02 0.0025 30.7 4.2 31 138-168 23-55 (191)
238 cd08190 HOT Hydroxyacid-oxoaci 22.3 5.3E+02 0.011 28.8 9.9 49 116-170 9-58 (414)
239 TIGR03707 PPK2_P_aer polyphosp 22.1 2.9E+02 0.0064 28.6 7.2 52 138-204 32-85 (230)
240 PF01650 Peptidase_C13: Peptid 22.0 4.8E+02 0.01 27.4 8.9 34 236-271 152-186 (256)
241 KOG0057 Mitochondrial Fe/S clu 21.8 81 0.0018 36.8 3.3 40 138-191 379-418 (591)
242 PF00580 UvrD-helicase: UvrD/R 21.5 60 0.0013 33.4 2.2 28 135-163 14-42 (315)
243 TIGR00337 PyrG CTP synthase. C 21.4 1.1E+02 0.0023 35.7 4.3 32 138-169 2-37 (525)
244 COG2019 AdkA Archaeal adenylat 21.2 51 0.0011 32.9 1.4 31 138-170 5-37 (189)
245 PRK13507 formate--tetrahydrofo 21.2 1.3E+02 0.0029 35.2 4.9 41 124-167 53-99 (587)
246 PF08901 DUF1847: Protein of u 21.1 1.4E+02 0.003 29.3 4.3 47 114-167 39-85 (157)
247 PRK09518 bifunctional cytidyla 21.1 5.1E+02 0.011 31.2 10.1 21 139-159 3-25 (712)
248 PRK13506 formate--tetrahydrofo 21.0 1.2E+02 0.0026 35.5 4.5 30 137-166 54-89 (578)
249 PF09818 ABC_ATPase: Predicted 20.8 1.7E+02 0.0037 33.3 5.5 71 57-147 327-399 (448)
250 PRK05380 pyrG CTP synthetase; 20.7 1.1E+02 0.0024 35.6 4.2 32 138-169 3-38 (533)
251 cd02026 PRK Phosphoribulokinas 20.4 51 0.0011 34.8 1.3 25 139-163 1-27 (273)
252 PRK14490 putative bifunctional 20.3 1E+02 0.0022 33.9 3.7 33 138-171 6-40 (369)
253 PF09936 Methyltrn_RNA_4: SAM- 20.3 4E+02 0.0087 26.9 7.4 22 598-619 81-102 (185)
254 KOG1805 DNA replication helica 20.3 1.3E+02 0.0029 37.3 4.8 30 138-168 689-718 (1100)
255 cd02022 DPCK Dephospho-coenzym 20.3 74 0.0016 30.9 2.4 24 139-166 1-26 (179)
256 TIGR03709 PPK2_rel_1 polyphosp 20.2 3.6E+02 0.0078 28.6 7.6 51 139-204 58-110 (264)
257 PRK13889 conjugal transfer rel 20.1 84 0.0018 39.3 3.3 30 139-169 367-396 (988)
258 COG0237 CoaE Dephospho-CoA kin 20.1 72 0.0016 32.3 2.3 26 137-166 2-29 (201)
259 PF01935 DUF87: Domain of unkn 20.1 91 0.002 31.3 3.0 30 139-169 28-58 (229)
No 1
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=3.6e-108 Score=910.50 Aligned_cols=524 Identities=60% Similarity=0.973 Sum_probs=424.5
Q ss_pred chhhcCCCCCCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHH
Q 006403 77 TEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCE 156 (646)
Q Consensus 77 ~~~~~~~p~~~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~ 156 (646)
.+.....|..++|++|+++|+++++++.+..+... ..+|++|+++|++||+++|.+++++|||||||||||||+|++
T Consensus 4 ~~~~~~~~~~~~y~~a~~~L~sl~~~~~~~~~~~~---~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~ 80 (530)
T PLN02881 4 MATEDDAPTSDSYEEALDALSSLITKKSRADPSNP---GDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTE 80 (530)
T ss_pred ccccccCccccCHHHHHHHHHhcccchhhcccccc---CCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHH
Confidence 34566778889999999999999998665543322 378999999999999877778999999999999999999999
Q ss_pred HHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcE
Q 006403 157 AILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDV 236 (646)
Q Consensus 157 sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~ 236 (646)
+||+++|+|||+||||||+++||||+|||.+|+++.|.++||+||++++....+..++|+|||++|+|||++|.+++||+
T Consensus 81 siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~ 160 (530)
T PLN02881 81 SILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDV 160 (530)
T ss_pred HHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999999999999999999999997655555679999999999999999999999
Q ss_pred EEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCcc
Q 006403 237 AIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVP 316 (646)
Q Consensus 237 aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~ 316 (646)
+|||||+|||+|+||++.+|+++|||||++||+++||+|+|+|||+|+||||++.|+|+.+|+++++++++++|++.+++
T Consensus 161 aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~q~~ea~~vl~~~A~e~~a~ 240 (530)
T PLN02881 161 AILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVP 240 (530)
T ss_pred EEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeCCChHHHHHHHHHHHHhCCc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccchhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCcEEEEec
Q 006403 317 LEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYD 396 (646)
Q Consensus 317 l~~~~~~~~~~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR~E~v~~ 396 (646)
++.++.++...+..+.++|.|.||..||++|++++..||++.|... .+.......+++.+.+||+++.||||||++..
T Consensus 241 l~~v~~~~~~~~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~--~~~~~~~~~l~~~i~~GL~~~~wpGR~e~v~~ 318 (530)
T PLN02881 241 LQVVEPLDSYGLSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE--FEALLQAGTLPEQFIKGLSTASLQGRAQVVPD 318 (530)
T ss_pred EEEecccccceecccCCCCCChhHHHhHHHHHHHHHHHHhhccccc--cccccccCCCHHHHHHHHHhCCCCceEEEecc
Confidence 9987653321223577899999999999999999999987654210 00001011357899999999999999999965
Q ss_pred cCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccc---cc
Q 006403 397 ISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHK---ME 473 (646)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 473 (646)
.. .....++++.|||||||||+||++|.+||+...+.....+.. +|..+. +.
T Consensus 319 ~~-------~~~~~~~~~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~------------------~~~~~~~~~~~ 373 (530)
T PLN02881 319 SY-------INSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGS------------------GYGPHGGGGKS 373 (530)
T ss_pred cc-------ccccCCCCCeEEEECCCCHHHHHHHHHHHHHHhcccccCCcc------------------ccccccccccc
Confidence 10 000011347899999999999999999998865432211110 011000 00
Q ss_pred cccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHH
Q 006403 474 KTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQR 553 (646)
Q Consensus 474 ~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~ 553 (646)
..+...+..++|+||||+++||+..||+.|.+.|.+++.+||+||||||.++|++. +++ .+..+...+|+||+.+|+
T Consensus 374 ~~~~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~aiF~~n~~~~~~~--~~~-~~~~~~~~~l~~q~~l~~ 450 (530)
T PLN02881 374 EDTESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVPNISVYNKV--GSG-LPVDDPQVDLSWQFTLQR 450 (530)
T ss_pred ccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCeEEEcCCccccCCC--ccc-CCCcchhhhHHHHHHHHH
Confidence 01122344579999999999999999999999998888999999999999999886 343 333344568999999999
Q ss_pred HHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCc
Q 006403 554 LWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGS 633 (646)
Q Consensus 554 ~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGS 633 (646)
.|++|+++....+..+.. ++..+.+.+.....++++|++||++||+|+|+++.+++..++|||||||
T Consensus 451 ~W~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGS 517 (530)
T PLN02881 451 VWESLIRGKAGAPADAVC-------------EESASSGLNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGS 517 (530)
T ss_pred HHHHhccccccccccccc-------------cccccccccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecc
Confidence 999997533211000111 1222233344445568999999999999999999876666899999999
Q ss_pred hhcHHhHHhhhcC
Q 006403 634 LHLVGDVLKLLKR 646 (646)
Q Consensus 634 lhLVG~vl~~l~~ 646 (646)
||||||+|++|+|
T Consensus 518 lhLvG~~l~~l~~ 530 (530)
T PLN02881 518 LHLVGDVLRLLKK 530 (530)
T ss_pred hhhhhHHHHHhcC
Confidence 9999999999986
No 2
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.7e-104 Score=848.99 Aligned_cols=474 Identities=48% Similarity=0.749 Sum_probs=403.7
Q ss_pred CCCCcHHHHHHHHHhhhhhhhcCCC---ccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHH
Q 006403 84 PLSSSYENAMQALSSLITRQKRGEQ---SHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILR 160 (646)
Q Consensus 84 p~~~~y~~A~~~L~sl~~~~~~~~~---~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~ 160 (646)
+...+|++|+.+||+||++.+...+ ........+|++|++||++||++++++++++|||||||||||||+|+++||+
T Consensus 16 ~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SILr 95 (496)
T KOG2525|consen 16 ISSKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESILR 95 (496)
T ss_pred ccchhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHHH
Confidence 3467799999999999996443211 1111223689999999999998666999999999999999999999999999
Q ss_pred HCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEe
Q 006403 161 ECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIE 240 (646)
Q Consensus 161 ~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlE 240 (646)
++|+|||+||||||+++||||+|||+|||++.|.+|||+||++++.....+.++|+||+|||++||++|.+++||+||+|
T Consensus 96 ~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViE 175 (496)
T KOG2525|consen 96 QQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIE 175 (496)
T ss_pred hcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEEE
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred eccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEe
Q 006403 241 VGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVA 320 (646)
Q Consensus 241 vG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~ 320 (646)
||+||++|+||+|.+|.+|+||+||+||+++||+|+++|||+||||||.|+|+|+.+|+++++++|+++|.+.+++++.+
T Consensus 176 vGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e~~nvL~~ra~e~~~~L~~v 255 (496)
T KOG2525|consen 176 VGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVPQPPEALNVLKERASELGVPLFVV 255 (496)
T ss_pred eccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcCCcHHHHHHHHHHHHhcCCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCC-cHHHHHHHHhcCCCCCcEEEEeccCC
Q 006403 321 APLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGAD-LPDAFVRGLSTAHLLGRAQIVYDISL 399 (646)
Q Consensus 321 ~~~~~~~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~-l~e~i~~gL~~~~~pGR~E~v~~~~~ 399 (646)
++.+...+.+..+++.|.||..|+++|+.++.+|+...|.+....+....... +|+.++.||+++.||||+|++..+
T Consensus 256 ~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~GL~~~~wPGR~qil~~~-- 333 (496)
T KOG2525|consen 256 PPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLSGLASTDWPGRLQILEYG-- 333 (496)
T ss_pred CCchhhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHHHhcchhhccCCCceEEEecC--
Confidence 88765556667799999999999999999999998776632211111111111 678889999999999999999874
Q ss_pred CCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccc
Q 006403 400 VPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHAN 479 (646)
Q Consensus 400 ~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (646)
++..|++||||||+||++|.+||++..+.. .
T Consensus 334 ------------~~~~~llDGAHt~eSaea~~~w~~~~~~~~-------------------------------------~ 364 (496)
T KOG2525|consen 334 ------------RGVTWLLDGAHTKESAEACAKWFRKAVRGL-------------------------------------K 364 (496)
T ss_pred ------------CCcEEEecCCCCHHHHHHHHHHHHHHhccC-------------------------------------C
Confidence 358899999999999999999999975431 1
Q ss_pred cCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCc-cCCCccccchhHHHHHHHHHHHh
Q 006403 480 KISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSF-IPLAISGKDLSWQFSLQRLWERI 558 (646)
Q Consensus 480 ~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~-~~~~~~~~~l~~q~~l~~~w~~l 558 (646)
+..-+||+|+|+++||+..|++.|.. +...+..|++|+|+|+++.++...+.+.. ++...+ .++.||..|+++|+++
T Consensus 365 ~~~~~illfn~t~~~d~~~Ll~~L~~-~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~~~~~s~~-~~l~~q~~L~~~w~~l 442 (496)
T KOG2525|consen 365 KLTSLILLFNCTSDRDPPLLLPLLKP-DAVIGTRFSSVVFMPNITSSSPVGSADSISLNTSTE-EQLNWQNDLQSVWEEL 442 (496)
T ss_pred CccceEEEEEecCCcchHhHhHHhcc-ccccccccceEEecccccccCCccchhhhhccCCch-HHHHHhHHHHHHHHHH
Confidence 11128999999999999999999887 66667899999999999777665332222 222222 4799999999999999
Q ss_pred hcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCchhcHH
Q 006403 559 IHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVG 638 (646)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGSlhLVG 638 (646)
.++... ....+.|++||++|++|+|+...+ ..+++|||||||||
T Consensus 443 ~~~~~~--------------------------------~~~~~~V~~sL~~a~~~Lr~~~~~----s~~~~V~gslhlvg 486 (496)
T KOG2525|consen 443 KESEGK--------------------------------TEDPSIVFGSLYLAYELLRDDQHL----SPRIEVLGSLHLVG 486 (496)
T ss_pred hhcCCC--------------------------------ceeeeeEeccHHHHHHHHHhcCCC----CCeEEEEEEEEEec
Confidence 753211 123578999999999999997433 33888889999999
Q ss_pred hHHhhhcC
Q 006403 639 DVLKLLKR 646 (646)
Q Consensus 639 ~vl~~l~~ 646 (646)
+||.+|++
T Consensus 487 ~vl~~l~~ 494 (496)
T KOG2525|consen 487 GVLVLLDR 494 (496)
T ss_pred hHhhhhhc
Confidence 99999974
No 3
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-81 Score=684.07 Aligned_cols=404 Identities=35% Similarity=0.495 Sum_probs=332.4
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 006403 87 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 87 ~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kv 166 (646)
++|+++.+||..+..+..++ .. ..+|+||+++|++|| +|++.+++|||+|||||||||+|+++||+++||||
T Consensus 2 ~~~~~~~~wl~~l~~~~~~~---~i---~~gL~Ri~~ll~~LG--nP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~V 73 (427)
T COG0285 2 MSLQELAEWLHYLEQLHPKP---GI---DLGLERISRLLERLG--NPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKV 73 (427)
T ss_pred cchHHHHHHHHHHHhcCCCC---cc---cCChHHHHHHHHHcC--CccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCc
Confidence 46788999998887653221 12 257999999999999 58899999999999999999999999999999999
Q ss_pred EEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCC-CCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCC
Q 006403 167 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTED-LPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG 245 (646)
Q Consensus 167 Gl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~-~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GG 245 (646)
|.||||||.+|||||+|||++||++.+.++|..| ++..... ...|+|||++|+|||.+|.+++||+||||||+||
T Consensus 74 G~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~v----e~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGG 149 (427)
T COG0285 74 GVYTSPHLLSFNERIRINGEPISDEELAAAFERV----EEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGG 149 (427)
T ss_pred eEECCCccCccceEEEECCEECCHHHHHHHHHHH----HHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccc
Confidence 9999999999999999999999999999988644 4333222 3569999999999999999999999999999999
Q ss_pred CccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeC-CchHHHHHHHHHHHhcCccEEEec-cc
Q 006403 246 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP-QLSEAMSVLQDRALELMVPLEVAA-PL 323 (646)
Q Consensus 246 r~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~-q~~~~~~vl~~~a~~~~~~l~~~~-~~ 323 (646)
|+|+||++. |.++|||||++||+++||+|+|+||++||||||++.|+|+.. +.|+++.+++++|.+.++++...+ ++
T Consensus 150 RlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~ 228 (427)
T COG0285 150 RLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF 228 (427)
T ss_pred cccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch
Confidence 999999996 999999999999999999999999999999999999999987 668899999999999999988764 21
Q ss_pred c---------cc---chhcccccCcchh-hHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCc
Q 006403 324 D---------IE---KLKRLELSLSGDH-QLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGR 390 (646)
Q Consensus 324 ~---------~~---~~~~v~l~L~G~h-q~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR 390 (646)
. +. ....+.+++.|.| |..||++|++++..+ +.. ...+.|.+||+++.||||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l----~~~-----------i~~~~i~~gl~~~~wpGR 293 (427)
T COG0285 229 QVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEAL----GKE-----------ISEEAIRKGLANVDWPGR 293 (427)
T ss_pred hhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHh----ccc-----------CCHHHHHHHHHhCcCCce
Confidence 1 11 1235778888888 999999999999987 410 136889999999999999
Q ss_pred EEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccc
Q 006403 391 AQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGH 470 (646)
Q Consensus 391 ~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (646)
||++... +.|++||||||+|+++++++|++...
T Consensus 294 ~e~l~~~----------------p~i~lDgAHNp~aa~~La~~l~~~~~------------------------------- 326 (427)
T COG0285 294 LERLSEN----------------PLILLDGAHNPHAARALAETLKTLFN------------------------------- 326 (427)
T ss_pred EEEecCC----------------CeEEEECCCCHHHHHHHHHHHHHHhc-------------------------------
Confidence 9999865 68999999999999999999988732
Q ss_pred ccccccccccCcc-EEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHH
Q 006403 471 KMEKTKHANKISK-QILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQF 549 (646)
Q Consensus 471 ~~~~~~~~~~~~~-~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~ 549 (646)
..+ +++|||++.+||...++..|.. . ++.+|++.. .| .++.+.+
T Consensus 327 ----------~~~~~~~v~g~l~dKd~~~~l~~L~~-------~-~~~~~~~~~-~~------~ra~~~~---------- 371 (427)
T COG0285 327 ----------DRPRLTLVFGMLKDKDIAGMLAALLP-------I-VDEIYTTPL-PW------PRALDAE---------- 371 (427)
T ss_pred ----------cCCceEEEEEeecCCCHHHHHHHhhc-------c-CcEEEEccC-CC------cccCCHH----------
Confidence 122 8999999999999999998864 2 667777666 22 2222111
Q ss_pred HHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEE
Q 006403 550 SLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVL 629 (646)
Q Consensus 550 ~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VL 629 (646)
.|.+.-.+.. ... .+++++|++++.+..+ .+-.||
T Consensus 372 ~l~~~~~~~~----------------------------------------~~~-~~~~~~a~~~~~~~~~----~~~~il 406 (427)
T COG0285 372 ELLAFAGERG----------------------------------------GVE-LDDVAEALELALEKAD----EDDLVL 406 (427)
T ss_pred HHHHHHHhhc----------------------------------------CCc-cccHHHHHHHHHHhcC----CCCeEE
Confidence 1222211111 001 5689999999887652 245899
Q ss_pred EeCchhcHHhHHhhhc
Q 006403 630 VTGSLHLVGDVLKLLK 645 (646)
Q Consensus 630 VTGSlhLVG~vl~~l~ 645 (646)
||||||+||++++.++
T Consensus 407 V~GSly~~~ev~~~~~ 422 (427)
T COG0285 407 VTGSLYLAGEVLELLK 422 (427)
T ss_pred EEecHHHHHHHHHHhh
Confidence 9999999999999985
No 4
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=2.3e-78 Score=677.72 Aligned_cols=446 Identities=30% Similarity=0.398 Sum_probs=343.7
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccC----CChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHC
Q 006403 87 SSYENAMQALSSLITRQKRGEQSHIAGRY----GKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILREC 162 (646)
Q Consensus 87 ~~y~~A~~~L~sl~~~~~~~~~~~~~~~~----~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~ 162 (646)
.+|+++++||.++..+.+.+.+... +.. .+|+||+++|++|| +|+.++++|||||||||||||+|+++||+++
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~gL~r~~~ll~~LG--~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~a 100 (510)
T PLN02913 24 PELGDFLRYLDSLKNYEKSGVPKDA-GTDSDDGFDLGRMRRLMDRLG--NPHSKFKAVHVAGTKGKGSTAAFLSNILRAQ 100 (510)
T ss_pred cCHHHHHHHHHhhccccccCCcccc-ccccccCCCHHHHHHHHHHcC--CchhhCcEEEEeCCCchHHHHHHHHHHHHhc
Confidence 4589999999999876544333221 222 78999999999999 5888899999999999999999999999999
Q ss_pred CCCeEEEcCCccccccceeEEC--CEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEe
Q 006403 163 GFRTGLFTSPHLIDVRERFRIN--GLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIE 240 (646)
Q Consensus 163 G~kvGl~TSPhL~~~~ERI~In--G~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlE 240 (646)
|+|||+||||||.++||||+|| |++|+++.|.++|.+|++.+++........|+|||++|++||.+|.+++||++|||
T Consensus 101 G~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlE 180 (510)
T PLN02913 101 GYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIE 180 (510)
T ss_pred CCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 9999999999999999999999 99999999999999999887653222223589999999999999999999999999
Q ss_pred eccCCCccccccccC--CcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeC-CchHHHHHHHHHHHhcCccE
Q 006403 241 VGLGGEKDSTNVIKE--PVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP-QLSEAMSVLQDRALELMVPL 317 (646)
Q Consensus 241 vG~GGr~D~TNvi~~--P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~-q~~~~~~vl~~~a~~~~~~l 317 (646)
||+|||+|+||++.. |+++||||||+||+++||+|+|+||++|+||||++.|+|++. +.+++..++++.|++.++++
T Consensus 181 vGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l 260 (510)
T PLN02913 181 AGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKASSMNSPV 260 (510)
T ss_pred ecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHHHhCCCE
Confidence 999999999999953 599999999999999999999999999999999999999984 66778888888999989887
Q ss_pred EEec-c-ccc--------c----c-----------------hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCccccc
Q 006403 318 EVAA-P-LDI--------E----K-----------------LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSH 366 (646)
Q Consensus 318 ~~~~-~-~~~--------~----~-----------------~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~ 366 (646)
+.+. . ++. . . ...+.++|.|.||+.|+++|++++..+ .+.+. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L-~~~~~-~---- 334 (510)
T PLN02913 261 VSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCL-RDQGW-R---- 334 (510)
T ss_pred EEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHH-HhcCC-C----
Confidence 7652 1 100 0 0 113568899999999999999998775 21221 0
Q ss_pred CCCCCCCcHHHHHHHHhcCCCCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCc
Q 006403 367 NDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSL 446 (646)
Q Consensus 367 ~~~~~~~l~e~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~ 446 (646)
...+.+.+||++++||||||++...+. +. ...+++.||+||||||+|++++++++++..
T Consensus 335 ------i~~~~I~~gL~~~~~pGR~E~i~~~~~------~~-~~~~~~~vIlDgAHNp~s~~al~~~L~~~~-------- 393 (510)
T PLN02913 335 ------ISDASIRAGLENTNLLGRSQFLTSKEA------EV-LGLPGATVLLDGAHTKESAKALVDTIKTAF-------- 393 (510)
T ss_pred ------CCHHHHHHHHHhCCCCCceEEeecccc------cc-ccCCCCEEEEECCCCHHHHHHHHHHHHHhc--------
Confidence 125789999999999999999863200 00 000135899999999999999999987531
Q ss_pred cccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCcc
Q 006403 447 SSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTY 526 (646)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~ 526 (646)
+..+.++|||+++|||...+++.|... ..+|.+++++.....
T Consensus 394 ---------------------------------~~~ki~~V~gml~DKd~~~~l~~l~~~-----~~~d~v~~~~~~~~~ 435 (510)
T PLN02913 394 ---------------------------------PEARLALVVAMASDKDHLAFASEFLSG-----LKPEAVFLTEADIAG 435 (510)
T ss_pred ---------------------------------CCCCEEEEEEccCCCCHHHHHHHHhcc-----cCCCEEEEEcCCCCC
Confidence 123689999999999999988876532 136888887654100
Q ss_pred ccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCC
Q 006403 527 SKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPS 606 (646)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s 606 (646)
. +.++.+. ..|++.|++....... .+ .....+.++++
T Consensus 436 --~--~~r~~~~----------~~l~~~~~~~~~~~~~-------------------------~~----~~~~~~~~~~~ 472 (510)
T PLN02913 436 --G--KSRSTSA----------SALKEAWIKAAPELGI-------------------------ET----LLAENNSLLKS 472 (510)
T ss_pred --C--CCCCCCH----------HHHHHHHHHhccccCc-------------------------ee----eccccccccCC
Confidence 0 1122111 3456677664211000 00 00124567889
Q ss_pred HHHHHHHHHhhhhcCCCCcceEEEeCchhcHHhHHhhhc
Q 006403 607 LPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLK 645 (646)
Q Consensus 607 i~~ai~~~r~~~~~~~~~~~~VLVTGSlhLVG~vl~~l~ 645 (646)
+.+|++.+++.+.. +....|||||||||||++++.|+
T Consensus 473 ~~~a~~~~~~~~~~--~~~~~v~v~GSlylv~~v~~~~~ 509 (510)
T PLN02913 473 LVDASAILRKARTL--DPSSVVCVTGSLHIVSAVLASLQ 509 (510)
T ss_pred HHHHHHHHHHhccc--CCCCEEEEeCcHHHHHHHHHHhc
Confidence 99999998765420 12347999999999999999875
No 5
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=2.1e-73 Score=619.61 Aligned_cols=381 Identities=40% Similarity=0.584 Sum_probs=309.4
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHH
Q 006403 118 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 197 (646)
Q Consensus 118 l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f 197 (646)
|+||+++|++|| +|++++++|||||||||||||+|+++||+++|+|||+||||||.++||||+|||++|+++.|.++|
T Consensus 1 l~r~~~~l~~lg--~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 78 (397)
T TIGR01499 1 LERMKKLLEALG--NPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAF 78 (397)
T ss_pred ChHHHHHHHHcC--CcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHH
Confidence 689999999999 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHH
Q 006403 198 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLN 277 (646)
Q Consensus 198 ~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~Tle 277 (646)
.+|++..+... ..|++||++|++||++|.++++|++|||||+|||+|+||++ +|+++|||||++||+++||+|+|
T Consensus 79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~e 153 (397)
T TIGR01499 79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTLE 153 (397)
T ss_pred HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccHH
Confidence 99987764321 25999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-c----------cccc----hhcccccCcchhhHh
Q 006403 278 DIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L----------DIEK----LKRLELSLSGDHQLV 342 (646)
Q Consensus 278 eIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~----------~~~~----~~~v~l~L~G~hq~~ 342 (646)
+||++|++||+++.++|++.|++++.+++++.+.+.+++++.++. + .+.. ...+.++++|.||++
T Consensus 154 ~ia~~Ka~I~k~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 233 (397)
T TIGR01499 154 EIAWEKAGIIKEGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQAE 233 (397)
T ss_pred HHHHHHhCccCCCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHHHH
Confidence 999999999999999999999998888888878777777655431 1 1110 123567899999999
Q ss_pred hHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCC
Q 006403 343 NAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAH 422 (646)
Q Consensus 343 NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAH 422 (646)
|+++|++++..+ |... . ...++.+.+||+++.||||||++... ++.+|+||||
T Consensus 234 N~~~Aiaa~~~l----g~~~------~--~i~~~~i~~~L~~~~~pGR~e~i~~~---------------~~~viiD~AH 286 (397)
T TIGR01499 234 NAALALAALEVL----GKQR------P--KLSEEAIRKGLANTIWPGRLEILSED---------------NPNILLDGAH 286 (397)
T ss_pred HHHHHHHHHHHH----Hhcc------C--CCCHHHHHHHHHhCCCCceEEEEecC---------------CCEEEEECCC
Confidence 999999999886 4100 0 01267899999999999999999753 3679999999
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHH
Q 006403 423 TAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPR 502 (646)
Q Consensus 423 Np~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~ 502 (646)
||+|+++++++|+... +..+.++||||++|||...++..
T Consensus 287 Np~a~~~~l~~l~~~~-----------------------------------------~~~~i~~V~G~~~dkd~~~~~~~ 325 (397)
T TIGR01499 287 NPHSAEALAEWFKKRF-----------------------------------------NGRPIILLFGALADKDAAAMLAP 325 (397)
T ss_pred CHHHHHHHHHHHHHhc-----------------------------------------CCCCeEEEEEeeCCCCHHHHHHH
Confidence 9999999999997641 12367899999999999999988
Q ss_pred HHHHhhhcCCCccE-EEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCc
Q 006403 503 LVSTCASSGTHFSK-ALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPC 581 (646)
Q Consensus 503 L~~~~~~~~~~fd~-~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~ 581 (646)
|.+.+ +. +++++.+ +.+..+++ + +. +.+...
T Consensus 326 l~~~~-------~~d~~~~~~~--------~~r~~~~~----~------i~---~~~~~~-------------------- 357 (397)
T TIGR01499 326 LKPVV-------DKEVFVTPFD--------YPRADDAA----D------LA---ALAETF-------------------- 357 (397)
T ss_pred Hhhcc-------CcEEEEECCC--------CCCCCCHH----H------HH---HHHHHc--------------------
Confidence 86533 22 5565544 11221111 1 11 122110
Q ss_pred cccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCchhcHHhHHhhh
Q 006403 582 KFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLL 644 (646)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGSlhLVG~vl~~l 644 (646)
.+.+.++..+|++.+. .++ ..-.|||||||||||++++.+
T Consensus 358 ------------------~~~~~~~~~~ai~~a~-~~~----~~d~vlv~GSlyl~~~~~~~~ 397 (397)
T TIGR01499 358 ------------------GKETVEDWREALALAL-NAS----AEDDILVTGSLYLVGEVRKLL 397 (397)
T ss_pred ------------------CceecCCHHHHHHHHH-hCC----CCCEEEEEccHHHHHHHHHhC
Confidence 1346789999998876 332 223699999999999998753
No 6
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=2.7e-68 Score=583.60 Aligned_cols=392 Identities=27% Similarity=0.316 Sum_probs=309.8
Q ss_pred cHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeE
Q 006403 88 SYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 88 ~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvG 167 (646)
+|++++++|.++..+ +.+++|+||+++|+.|| +|++++++|||||||||||||+|+++||+++|+|||
T Consensus 12 ~~~~~~~~l~~~~~~----------~~~~~l~~~~~ll~~lg--~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG 79 (416)
T PRK10846 12 PLASWLSYLENLHSK----------TIDLGLERVSQVAARLD--LLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVG 79 (416)
T ss_pred HHHHHHHHHHhcccc----------CCCCChHHHHHHHHHhC--CCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCce
Confidence 478888888888653 22478999999999999 577788999999999999999999999999999999
Q ss_pred EEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCc
Q 006403 168 LFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEK 247 (646)
Q Consensus 168 l~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~ 247 (646)
+||||||.+++|||+|||++|+++.|.+++.++...... ..|++||++|++||.+|.+++||++|+|||+|||+
T Consensus 80 ~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~------~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrl 153 (416)
T PRK10846 80 VYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGD------ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRL 153 (416)
T ss_pred EECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCc
Confidence 999999999999999999999999999988777654321 24899999999999999999999999999999999
Q ss_pred cccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-c---
Q 006403 248 DSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L--- 323 (646)
Q Consensus 248 D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~--- 323 (646)
|+||++ +|+++|||||++||+++||+|+|+||++|++||+++.++|++.++ +..++.+.|.+.+++++.++. +
T Consensus 154 d~tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~~d--~~~~~~~~a~~~~~~~~~~~~~~~~~ 230 (416)
T PRK10846 154 DATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGEPD--MPSTIADVAQEKGALLQRRGVDWNYS 230 (416)
T ss_pred hhhhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECCcc--HhHHHHHHHHHhCCcEEEecceeeee
Confidence 999999 699999999999999999999999999999999999999887554 224455677777777653221 0
Q ss_pred ------cccchh--cccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCcEEEEe
Q 006403 324 ------DIEKLK--RLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVY 395 (646)
Q Consensus 324 ------~~~~~~--~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR~E~v~ 395 (646)
...... ...++++ .||++|+++|++++..+ +. ....+.|.+||+++.||||||++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~----~~-----------~i~~~~i~~~L~~~~~~gR~e~~~ 294 (416)
T PRK10846 231 VTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS----GL-----------EVSEQAIRDGIASAILPGRFQIVS 294 (416)
T ss_pred ccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc----CC-----------CCCHHHHHHHHHhCCCCceEEEEc
Confidence 000000 1124555 47999999999998765 21 023688999999999999999997
Q ss_pred ccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccc
Q 006403 396 DISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKT 475 (646)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (646)
.. +.+|+||||||+|++++++.+++..
T Consensus 295 ~~----------------~~iI~D~AHNp~a~~~l~~~L~~~~------------------------------------- 321 (416)
T PRK10846 295 ES----------------PRVILDVAHNPHAAEYLTGRLKALP------------------------------------- 321 (416)
T ss_pred CC----------------CcEEEECCCCHHHHHHHHHHHHHhc-------------------------------------
Confidence 54 4599999999999999988776531
Q ss_pred cccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHH
Q 006403 476 KHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLW 555 (646)
Q Consensus 476 ~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w 555 (646)
+..+.++|||++++||...++..|.+ .++++++++... .+..+ . ..+++
T Consensus 322 ----~~~~ii~Vfg~~gdkd~~~~l~~L~~-------~~d~viv~~~~~--------~r~~~----~------~~l~~-- 370 (416)
T PRK10846 322 ----KNGRVLAVIGMLHDKDIAGTLACLKS-------VVDDWYCAPLEG--------PRGAT----A------EQLAE-- 370 (416)
T ss_pred ----CCCCEEEEEEeeCCCCHHHHHHHHhh-------hCCEEEEECCCC--------CCCCC----H------HHHHH--
Confidence 12478999999999999988877754 357777776431 11111 1 11222
Q ss_pred HHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCchh
Q 006403 556 ERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLH 635 (646)
Q Consensus 556 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGSlh 635 (646)
.+. ...+++++++|++++.+.++. .--||||||||
T Consensus 371 -~~~----------------------------------------~~~~~~~~~~Ai~~a~~~a~~----gD~VLi~GS~~ 405 (416)
T PRK10846 371 -HLG----------------------------------------NGKSFDSVAQAWDAAMADAKP----EDTVLVCGSFH 405 (416)
T ss_pred -Hhh----------------------------------------hCcccCCHHHHHHHHHHhcCC----CCEEEEECcHH
Confidence 111 123567899999999876643 22489999999
Q ss_pred cHHhHHhhhc
Q 006403 636 LVGDVLKLLK 645 (646)
Q Consensus 636 LVG~vl~~l~ 645 (646)
|||++++.++
T Consensus 406 ~~~~~~~~~~ 415 (416)
T PRK10846 406 TVAHVMEVID 415 (416)
T ss_pred HHHHHHHhhc
Confidence 9999999876
No 7
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=1.1e-46 Score=417.88 Aligned_cols=351 Identities=19% Similarity=0.149 Sum_probs=261.2
Q ss_pred cccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhh
Q 006403 24 FSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQ 103 (646)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~ 103 (646)
......+|||...|+.-|+++.|+|+.+.. | +.++++++|..+.+. ...+... ...
T Consensus 14 ~i~~i~~DSR~v~~g~lFval~G~~~dGh~-----f---i~~A~~~GA~~~v~~---~~~~~~~----------~~~--- 69 (460)
T PRK00139 14 EITGLTYDSRKVKPGDLFVALPGHKVDGRD-----F---IAQAIANGAAAVVAE---ADGEAGT----------GVP--- 69 (460)
T ss_pred ceeEEEeeccCcCCCCEEEEeCCCcCcHHH-----H---HHHHHHCCCEEEEEc---CccccCC----------Cce---
Confidence 346688999999999999999999999988 9 999999999998882 1110000 000
Q ss_pred hcCCCccccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccce
Q 006403 104 KRGEQSHIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRER 180 (646)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ER 180 (646)
.-.+++++++|..|+ +++|+.++++||||||||||||++|+++||+++|+++++++||+
T Consensus 70 -----------~i~V~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~------- 131 (460)
T PRK00139 70 -----------VIIVPDLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG------- 131 (460)
T ss_pred -----------EEEECCHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------
Confidence 012344455555554 34677788999999999999999999999999999999999999
Q ss_pred eEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC----CCccccccccCC
Q 006403 181 FRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG----GEKDSTNVIKEP 256 (646)
Q Consensus 181 I~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G----Gr~D~TNvi~~P 256 (646)
..|++.+++.. .+++|.+.++.+|..|.+.++|++|+|+|++ +++|.+ +|
T Consensus 132 ~~i~~~~~~~~----------------------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p 185 (460)
T PRK00139 132 NGIGGELIPSG----------------------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KF 185 (460)
T ss_pred cccCCeecccC----------------------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cC
Confidence 45677665321 1244556666678899999999999999975 356654 47
Q ss_pred cEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCC-cEEEeCCchHHHHHHHHHHHhc-----CccEEEecc-cccc---
Q 006403 257 VVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI-PAFTVPQLSEAMSVLQDRALEL-----MVPLEVAAP-LDIE--- 326 (646)
Q Consensus 257 ~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~-~av~~~q~~~~~~vl~~~a~~~-----~~~l~~~~~-~~~~--- 326 (646)
+++|||||+.||+++|| |+|+|+.+|++||+... .+|+|.|++....+... +... ..++...+- ....
T Consensus 186 ~iaViTnI~~dHl~~~g-t~e~i~~~K~~i~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (460)
T PRK00139 186 DVAVFTNLSRDHLDYHG-TMEDYLAAKARLFSELGLAAVINADDEVGRRLLAL-PDAYAVSMAGADLRATDVEYTDSGQT 263 (460)
T ss_pred CEEEEcCCCcccCCcCC-CHHHHHHHHHHHHhcCCCeEEEEcCcHhHHHHHhh-cEEEEecCCCCcEEEEEEEEecCceE
Confidence 99999999999999999 99999999999998755 68899998876554431 1101 112211100 0000
Q ss_pred -chh-cccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCC
Q 006403 327 -KLK-RLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNS 403 (646)
Q Consensus 327 -~~~-~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~ 403 (646)
.+. .+.++++|.||++|+++|++++..+ |. .++++.+||++++ ||||||++...
T Consensus 264 ~~~~~~~~l~l~G~hn~~NalaAia~a~~l----gi-------------~~~~i~~~L~~~~~~~gR~e~~~~~------ 320 (460)
T PRK00139 264 FTLVTEVESPLIGRFNVSNLLAALAALLAL----GV-------------PLEDALAALAKLQGVPGRMERVDAG------ 320 (460)
T ss_pred EEEEEEEEecccchhHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCCCcEEEEcC------
Confidence 011 4678899999999999999999987 62 3688999999999 99999999753
Q ss_pred CCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCcc
Q 006403 404 SGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISK 483 (646)
Q Consensus 404 ~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (646)
+++.||+||||||+|+++++++++.. ..+|
T Consensus 321 --------~~~~iI~DyahNP~s~~aal~~l~~~------------------------------------------~~~r 350 (460)
T PRK00139 321 --------QGPLVIVDYAHTPDALEKVLEALRPH------------------------------------------AKGR 350 (460)
T ss_pred --------CCCEEEEECCCCHHHHHHHHHHHHhh------------------------------------------cCCc
Confidence 24789999999999999999988653 1247
Q ss_pred EEEEEecCCCCChh--hhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 484 QILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 484 ~ilvFg~~~dRd~~--~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
+|+|||++++|+.. .++..+.. ..+|.++++++.
T Consensus 351 ~i~VlG~g~~k~~~~~~~~~~~~~------~~~d~vi~~~~~ 386 (460)
T PRK00139 351 LICVFGCGGDRDKGKRPLMGAIAE------RLADVVIVTSDN 386 (460)
T ss_pred EEEEECCCCCCchhhhHHHHHHHH------HcCCEEEEECCC
Confidence 89999998888765 24443332 136888887543
No 8
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=3.7e-44 Score=429.12 Aligned_cols=355 Identities=17% Similarity=0.188 Sum_probs=260.2
Q ss_pred cccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhhhc
Q 006403 26 VRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKR 105 (646)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~~~ 105 (646)
....+|||...|+.-|+++.|.|+.+.. | +.+|++++|..+++. +.... .+ .. ...
T Consensus 30 ~~i~~DSR~v~~g~lFval~G~~~dGh~-----f---i~~A~~~GA~~~v~~---~~~~~--~~---~~--~~~------ 85 (958)
T PRK11929 30 ADLRLDSREVQPGDLFVACRGAASDGRA-----F---IDQALARGAAAVLVE---AEGED--QV---AA--ADA------ 85 (958)
T ss_pred ceeeeeccCCCCCCEEEEeCCCCCCHHH-----H---HHHHHHcCCEEEEEe---ccccc--cc---cC--CCC------
Confidence 4578999999999999999999999888 9 999999999999882 11000 00 00 000
Q ss_pred CCCccccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeE
Q 006403 106 GEQSHIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFR 182 (646)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~ 182 (646)
+ .-.+++++++|..|. +.+|+.++++||||||||||||++|+++||+++|+++|+++|.. + .
T Consensus 86 ---~-----~i~V~d~~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-----~--~ 150 (958)
T PRK11929 86 ---L-----VLPVADLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-----A--R 150 (958)
T ss_pred ---e-----EEEECCHHHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-----c--c
Confidence 0 012344445554443 34687889999999999999999999999999999999998854 2 2
Q ss_pred ECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecc----CCCccccccccCCcE
Q 006403 183 INGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGL----GGEKDSTNVIKEPVV 258 (646)
Q Consensus 183 InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~----GGr~D~TNvi~~P~V 258 (646)
+++..|.. ....|.++++.++ |..|.+.++|++|||+|+ +||+|.+| |++
T Consensus 151 i~~~~i~~--------------------~~t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~~----p~i 204 (958)
T PRK11929 151 LDGRLIPG--------------------SLTTPDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGLR----IAV 204 (958)
T ss_pred CCCeeeec--------------------CCCCCCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCcccccc----cCE
Confidence 34443321 1234677776666 457778999999999985 36888864 699
Q ss_pred EEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEec---c----------
Q 006403 259 CGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA---P---------- 322 (646)
Q Consensus 259 aVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~---~---------- 322 (646)
+|||||+.||+++|| |+|+|+.+|++||+ ++.++|+|.|++.+..++.+.+.......+... +
T Consensus 205 aviTnI~~dHl~~~g-t~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 283 (958)
T PRK11929 205 AGFTNLTRDHLDYHG-TMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATA 283 (958)
T ss_pred EEEeCCCccccccCC-CHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcC
Confidence 999999999999999 99999999999998 678899999998876655432211111111100 0
Q ss_pred ----cccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEE
Q 006403 323 ----LDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIV 394 (646)
Q Consensus 323 ----~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v 394 (646)
|... ....+.++++|.||++|+++|++++..+ |. .+++|.+||++++ ||||||++
T Consensus 284 ~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----gi-------------~~~~I~~~L~~~~~~~gR~e~i 346 (958)
T PRK11929 284 HGQVFTLATPDGSYQLVTRLLGRFNVSNLLLVAAALKKL----GL-------------PLAQIARALAAVSPVPGRMERV 346 (958)
T ss_pred CceEEEEEeCCceEEEEecCccHhhHHHHHHHHHHHHHc----CC-------------CHHHHHHHHhcCCCCCCCcEEe
Confidence 0000 0123678899999999999999999887 62 3688999999997 99999998
Q ss_pred e---ccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccc
Q 006403 395 Y---DISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHK 471 (646)
Q Consensus 395 ~---~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (646)
. .. +++.+|+||||||+||++++++++....
T Consensus 347 ~~~~~~--------------~~~~vi~DyahnP~s~~a~l~~l~~~~~-------------------------------- 380 (958)
T PRK11929 347 GPTAGA--------------QGPLVVVDYAHTPDALAKALTALRPVAQ-------------------------------- 380 (958)
T ss_pred ccccCC--------------CCCEEEEECCCCHHHHHHHHHHHHHhcc--------------------------------
Confidence 4 22 2478999999999999999998875310
Q ss_pred cccccccccCccEEEEEecCCCCChh--hhHHHHHHHhhhcCCCccEEEEeCC
Q 006403 472 MEKTKHANKISKQILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPS 522 (646)
Q Consensus 472 ~~~~~~~~~~~~~ilvFg~~~dRd~~--~ll~~L~~~~~~~~~~fd~~if~~~ 522 (646)
++..|+|+||||+++||.. .++..+... .+|.++++++
T Consensus 381 -------~~~~r~i~V~g~g~~r~~~~~~~~~~~~~~------~~d~vi~t~~ 420 (958)
T PRK11929 381 -------ARNGRLVCVFGCGGDRDKGKRPEMGRIAAE------LADRVVVTSD 420 (958)
T ss_pred -------cCCCcEEEEECCCCCCCcchhHHHHHHHHH------hCCEEEEcCC
Confidence 1234789999999888754 566655431 4688887753
No 9
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=1.2e-42 Score=387.60 Aligned_cols=326 Identities=15% Similarity=0.159 Sum_probs=231.2
Q ss_pred cccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhc-CCCCCCcHHHHHHHHHhhhhh
Q 006403 24 FSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEE-NLPLSSSYENAMQALSSLITR 102 (646)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~y~~A~~~L~sl~~~ 102 (646)
......+|||...|+.-|+++ |.++ +.. | +.+|++++|..+++....+ +.|.
T Consensus 33 ~i~~i~~DSR~v~~g~lFva~-~~~~-gh~-----f---i~~A~~~GA~~~v~~~~~~~~~~~----------------- 85 (481)
T PRK14022 33 QFDDISYDSRTADEGTLFFAK-GAYF-KHK-----F---LQNAITQGLKLYVSEKDYEVGIPQ----------------- 85 (481)
T ss_pred cEEEEEecCcCCCCCCEEEEc-CCCc-hHH-----H---HHHHHHCCCeEEEEecccCCCCcE-----------------
Confidence 446789999999999999999 6666 766 8 9999999999998821100 1110
Q ss_pred hhcCCCccccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccc
Q 006403 103 QKRGEQSHIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRE 179 (646)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~E 179 (646)
-.+++++.+|..|+ +.+|+.++++||||||||||||++|+++||+..|.++++.++..
T Consensus 86 -------------i~V~d~~~al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~------ 146 (481)
T PRK14022 86 -------------VIVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNT------ 146 (481)
T ss_pred -------------EEECCHHHHHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeee------
Confidence 12334444444444 34688899999999999999999999999999998766554322
Q ss_pred eeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC----CCccccccccC
Q 006403 180 RFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG----GEKDSTNVIKE 255 (646)
Q Consensus 180 RI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G----Gr~D~TNvi~~ 255 (646)
..+..+.| ....+.|....++.+ +..+.+.++|++|||+|++ +|+|.. +
T Consensus 147 ------~~ig~~~~---------------~~~~~~p~~~~l~~~--~~~~~e~g~~~~v~EvsS~~~~~~r~~~~----~ 199 (481)
T PRK14022 147 ------TLDGETFF---------------KSALTTPESLDLFKM--MAEAVDNGMTHLIMEVSSQAYLVGRVYGL----T 199 (481)
T ss_pred ------eccCCeee---------------eCCCCCchHHHHHHH--HHHHHHCCCCEEEEEechhHHHhccccCc----c
Confidence 12221111 011123422222222 1235678999999999975 455543 5
Q ss_pred CcEEEEccCCcchhhhc-CCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-----------c
Q 006403 256 PVVCGVTSLGMDHMELL-GNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-----------L 323 (646)
Q Consensus 256 P~VaVITnIg~DHld~L-G~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-----------~ 323 (646)
|+++|||||+.||+++| ++|+|+|+.+|++||+++.++|+|.|++.....+. .+. ..+++.++. +
T Consensus 200 pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~~~~~~Vln~d~d~~~~~~~-~~~--~~~~~~~g~~~~~~~~~~~~~ 276 (481)
T PRK14022 200 FDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLMENSKAVVVNSDMDHFSELLE-QVT--PQEHDFYGIDSENQIMASNAF 276 (481)
T ss_pred ccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhcCCCEEEEEcCCCHHHHHHH-Hhc--CCCEEEEecCCccceEEEEEE
Confidence 89999999999999994 24999999999999999989999987443322222 221 112222210 1
Q ss_pred cccc----hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCcEEEEeccCC
Q 006403 324 DIEK----LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISL 399 (646)
Q Consensus 324 ~~~~----~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR~E~v~~~~~ 399 (646)
.... ...+.++++|.||++|+++|++++..+ |. .++++.+||++..||||||++...
T Consensus 277 ~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----gi-------------~~~~i~~~L~~~~~~gR~e~i~~~-- 337 (481)
T PRK14022 277 SFEATGKLAGTYDIQLIGKFNQENAMAAGLACLRL----GA-------------SLEDIQKGIAQTPVPGRMEVLTQS-- 337 (481)
T ss_pred EEEEcccCCceEEEEEechhhHHHHHHHHHHHHHc----CC-------------CHHHHHHHhccCCCCCCeEEEECC--
Confidence 1110 123567899999999999999999887 62 368899999993399999999753
Q ss_pred CCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccc
Q 006403 400 VPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHAN 479 (646)
Q Consensus 400 ~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (646)
+++.+|+||||||+|++++++.++..
T Consensus 338 ------------~g~~vi~DyahNP~s~~aal~~l~~~------------------------------------------ 363 (481)
T PRK14022 338 ------------NGAKVFIDYAHNGDSLNKLIDVVEEH------------------------------------------ 363 (481)
T ss_pred ------------CCCEEEEECCCCHHHHHHHHHHHhhh------------------------------------------
Confidence 24789999999999999999988653
Q ss_pred cCccEEEEEecCCCCChhh
Q 006403 480 KISKQILLFNCMEARHPQV 498 (646)
Q Consensus 480 ~~~~~ilvFg~~~dRd~~~ 498 (646)
..+|+|+||||+++|+...
T Consensus 364 ~~~r~i~V~G~~~e~g~~~ 382 (481)
T PRK14022 364 QKGKLILLLGAAGNKGESR 382 (481)
T ss_pred CCCCEEEEECCCCCCCcch
Confidence 1247899999999998876
No 10
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=2.5e-42 Score=383.09 Aligned_cols=356 Identities=17% Similarity=0.199 Sum_probs=250.9
Q ss_pred cccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhhhc
Q 006403 26 VRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKR 105 (646)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~~~ 105 (646)
....||||...|+.-|+++.|.|..+.. | +.+|++++|..+++ ++..+. .+. .. .
T Consensus 5 ~~v~~dsr~v~~g~lFval~G~~~dgh~-----f---i~~A~~~GA~~~i~---~~~~~~--~~~-------~~-~---- 59 (464)
T TIGR01085 5 TGLTLDSREVKPGDLFVAIKGTHVDGHD-----F---IHDAIANGAVAVVV---ERDVDF--YVA-------PV-P---- 59 (464)
T ss_pred eEEEecCcCCCCCCEEEEecCCcCCHHH-----H---HHHHHHCCCeEEEE---cccccc--ccC-------Cc-e----
Confidence 4578999999999999999999999988 9 99999999999998 221110 000 00 0
Q ss_pred CCCccccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeE
Q 006403 106 GEQSHIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFR 182 (646)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~ 182 (646)
...++++.+.|.+|+ +.+|+.++++||||||||||||++||+++|+.+|+++|+++|++ ..
T Consensus 60 ---------~~~v~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g-------~~ 123 (464)
T TIGR01085 60 ---------VIIVPDLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIG-------YR 123 (464)
T ss_pred ---------EEEECCHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccc-------ee
Confidence 012334444444444 23566678999999999999999999999999999999999998 33
Q ss_pred ECCEec-CHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHH-HHHHhhhCCCcEEEEeeccC-CCccccccccCCcEE
Q 006403 183 INGLDI-TEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVL-AFKIFVCEQVDVAIIEVGLG-GEKDSTNVIKEPVVC 259 (646)
Q Consensus 183 InG~~I-s~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~l-A~~~F~~~~vD~aVlEvG~G-Gr~D~TNvi~~P~Va 259 (646)
+++..+ .. ....+.|+.+++. .+..|.+.++|++|+|+|++ ++......+ +|+++
T Consensus 124 ~~~n~~ig~---------------------p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~-~p~ia 181 (464)
T TIGR01085 124 LGGNDLIKN---------------------PAALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGV-RFDAA 181 (464)
T ss_pred ECCeeeecC---------------------cccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCc-eeCEE
Confidence 343221 00 0113456666643 34566688999999999964 222222222 68999
Q ss_pred EEccCCcchhhhcCCCHHHHHHHHhcccCC---CCcEEEeCCchHHHHHHHHHHHhc------------CccEEEec---
Q 006403 260 GVTSLGMDHMELLGNTLNDIAFHKAGIFKP---QIPAFTVPQLSEAMSVLQDRALEL------------MVPLEVAA--- 321 (646)
Q Consensus 260 VITnIg~DHld~LG~TleeIA~~KagIfk~---g~~av~~~q~~~~~~vl~~~a~~~------------~~~l~~~~--- 321 (646)
|||||+.||++++| |+|+|+.+|++||+. ++.+|+|.|++............. ...+...+
T Consensus 182 viTnI~~dHl~~~g-s~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T TIGR01085 182 VFTNLSRDHLDFHG-TMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGY 260 (464)
T ss_pred EEccCCCCCCcccC-CHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEE
Confidence 99999999999999 999999999999984 345889999886544332211100 00111000
Q ss_pred -----ccccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEE
Q 006403 322 -----PLDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQ 392 (646)
Q Consensus 322 -----~~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E 392 (646)
.|... ....+.++++|.||++|+++|++++..+ |. ..++.+.++|++++ +|||||
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g~------------i~~e~i~~~L~~~~~~~gR~e 324 (464)
T TIGR01085 261 SFEGQQFTFETPAGEGHLHTPLIGRFNVYNLLAALATLLHL----GG------------IDLEDIVAALEKFRGVPGRME 324 (464)
T ss_pred ecCceEEEEEeCCceEEEEecCccHhHHHHHHHHHHHHHHc----CC------------CCHHHHHHHHHhCCCCCCCcE
Confidence 00000 0123678899999999999999999887 51 13688999999999 999999
Q ss_pred EEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccccc
Q 006403 393 IVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKM 472 (646)
Q Consensus 393 ~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (646)
++... +++.+|+||||||+||++++++++..
T Consensus 325 ~~~~~--------------~g~~vi~Dy~~NP~s~~aal~~l~~~----------------------------------- 355 (464)
T TIGR01085 325 LVDGG--------------QKFLVIVDYAHTPDALEKALRTLRKH----------------------------------- 355 (464)
T ss_pred EEEcC--------------CCCEEEEECCCCHHHHHHHHHHHHhh-----------------------------------
Confidence 98753 25789999999999999999988543
Q ss_pred ccccccccCccEEEEEecCCCCChh--hhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 473 EKTKHANKISKQILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 473 ~~~~~~~~~~~~ilvFg~~~dRd~~--~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
+..|+|+|||++++|+.. .+++.+.. ..+|.++++.+.
T Consensus 356 -------~~~r~i~VlGlg~~~~~~~~~~~~~~~~------~~~d~vi~~g~~ 395 (464)
T TIGR01085 356 -------KDGRLIVVFGCGGDRDRGKRPLMGAIAE------QLADLVILTSDN 395 (464)
T ss_pred -------CCCcEEEEECCCCCCCcchhHHHHHHHH------hcCCEEEEeCCC
Confidence 123789999988777654 44444433 136888887653
No 11
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=4.4e-41 Score=368.55 Aligned_cols=329 Identities=19% Similarity=0.194 Sum_probs=234.7
Q ss_pred cccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhhhcCCCc
Q 006403 30 WSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQS 109 (646)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~~~~~~~ 109 (646)
+|||...|+.-|++++|+++.+.. | +.+|++++|..++.. +..+.. ....
T Consensus 1 ~DSR~v~~g~lFval~G~~~dGh~-----f---i~~A~~~Ga~~~i~~---~~~~~~----------~~~~--------- 50 (417)
T TIGR01143 1 TDSRAIKPGDLFIALKGERFDGHD-----F---VEQALAAGAVAVLVD---REVGPD----------NGLP--------- 50 (417)
T ss_pred CCCCccCCCcEEEEeCCCCCCHHH-----H---HHHHHHCCCEEEEEc---ccccCC----------CCCC---------
Confidence 589999999999999999999988 9 999999999999882 110000 0000
Q ss_pred cccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCE
Q 006403 110 HIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGL 186 (646)
Q Consensus 110 ~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~ 186 (646)
.-.+++++++|..|+ +.+| +.++|+||||||||||+.|+++||++.|. .++|+. +++++| |
T Consensus 51 -----~i~V~d~~~al~~la~~~~~~~--~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i---g- 114 (417)
T TIGR01143 51 -----QILVDDTLEALQALASAKRAKF--SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI---G- 114 (417)
T ss_pred -----EEEECCHHHHHHHHHHHHHhhC--CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc---c-
Confidence 012334444554444 2233 35899999999999999999999999986 455664 333332 1
Q ss_pred ecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCcc---ccccccCCcEEEEcc
Q 006403 187 DITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKD---STNVIKEPVVCGVTS 263 (646)
Q Consensus 187 ~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D---~TNvi~~P~VaVITn 263 (646)
.|. ++ .+..+++|++|||+|+.+..+ .++.+ +|+++||||
T Consensus 115 ---------------------------~p~-----~~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTN 157 (417)
T TIGR01143 115 ---------------------------LPL-----TL----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITN 157 (417)
T ss_pred ---------------------------hhH-----HH----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcC
Confidence 121 11 135778999999998765544 35555 799999999
Q ss_pred CCcchhhhcCCCHHHHHHHHhcccCC---CCcEEEeCCchHHHHHHHHHHHhcCccEEEec--c----------------
Q 006403 264 LGMDHMELLGNTLNDIAFHKAGIFKP---QIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--P---------------- 322 (646)
Q Consensus 264 Ig~DHld~LG~TleeIA~~KagIfk~---g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~--~---------------- 322 (646)
|+.||+|+|| |+|+|+.+|+.||+. +..+|+|.|++....+. +.+. +.+++.++ .
T Consensus 158 i~~dHld~~g-s~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~-~~~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~ 233 (417)
T TIGR01143 158 IGPAHLEGFG-SLEGIAEAKGEILQGLKENGIAVINADDPAFAKFA-KRLP--NKAILSFGFEGGDFSAADISYSALGST 233 (417)
T ss_pred CcHHHhhhcC-CHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHH-Hhcc--CCcEEEECCCCCcEEEEEEEEcCCCCE
Confidence 9999999999 999999999999974 56789999988654332 2221 11222111 0
Q ss_pred -cccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEecc
Q 006403 323 -LDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDI 397 (646)
Q Consensus 323 -~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~ 397 (646)
+... ....+.++++|.||++|+++|++++..+ |. .++++.++|++++ +||||| +...
T Consensus 234 ~~~~~~~~~~~~~~~~l~G~hn~~N~laAia~~~~l----Gi-------------~~~~i~~~l~~~~~~~gR~e-~~~~ 295 (417)
T TIGR01143 234 GFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALEL----GI-------------PLEEIAEGLAELKLVKGRFE-IQTK 295 (417)
T ss_pred EEEEEeCCceEEEEccCCcHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCCcee-EEcC
Confidence 0000 0013667899999999999999999987 62 4789999999998 999999 4433
Q ss_pred CCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccccccccc
Q 006403 398 SLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTK 476 (646)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (646)
+++.+|+| |||||+|+++++++++..
T Consensus 296 --------------~~~~vidDsya~np~s~~~al~~l~~~--------------------------------------- 322 (417)
T TIGR01143 296 --------------NGLTLIDDTYNANPDSMRAALDALARF--------------------------------------- 322 (417)
T ss_pred --------------CCcEEEEcCCCCCHHHHHHHHHHHHhC---------------------------------------
Confidence 35789999 899999999999987643
Q ss_pred ccccCccEEEEEecC---CCCChhhhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 477 HANKISKQILLFNCM---EARHPQVLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 477 ~~~~~~~~ilvFg~~---~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
+ +|+|+||||+ |+++.. ..+.+.+.+.+. .+|.+|++.+.
T Consensus 323 ---~-~r~i~VlG~~~e~G~~~~~-~~~~l~~~~~~~--~~d~vi~~g~~ 365 (417)
T TIGR01143 323 ---P-GKKILVLGDMAELGEYSEE-LHAEVGRYANSL--GIDLVFLVGEE 365 (417)
T ss_pred ---C-CCEEEEEcCchhcChHHHH-HHHHHHHHHHHc--CCCEEEEECHH
Confidence 1 3789999998 667653 344555555432 36888887544
No 12
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.2e-39 Score=385.30 Aligned_cols=289 Identities=19% Similarity=0.184 Sum_probs=221.6
Q ss_pred HHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHH
Q 006403 120 RMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWE 199 (646)
Q Consensus 120 ~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~ 199 (646)
-...+++.|--+.|..++|+||||||||||||++|+++||+++|+++|+++|++ +.||+..+....
T Consensus 462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G-------~~i~~~~i~~g~------- 527 (864)
T TIGR02068 462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDG-------VYIGKYLVEKGD------- 527 (864)
T ss_pred HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCc-------eEECCEEEecCC-------
Confidence 346666666434677889999999999999999999999999999999999976 788888764321
Q ss_pred HHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcC-CCHHH
Q 006403 200 CWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLG-NTLND 278 (646)
Q Consensus 200 v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG-~Tlee 278 (646)
...| ..++.+|.+.++|++|+|+|+||.+|.++.+.+|+++|||||+.||++++| +|+|+
T Consensus 528 ------------~t~p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ 588 (864)
T TIGR02068 528 ------------NTGP-------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIED 588 (864)
T ss_pred ------------CCCh-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHH
Confidence 0112 233456788999999999999999999999888999999999999999887 79999
Q ss_pred HHHHHhccc---CCCCcEEEeCCchHHHHHHHHHHHhcCccEEEec--c-cc-------------c-c---------c--
Q 006403 279 IAFHKAGIF---KPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--P-LD-------------I-E---------K-- 327 (646)
Q Consensus 279 IA~~KagIf---k~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~--~-~~-------------~-~---------~-- 327 (646)
|+.+|++|+ ++++++|+|.|++.+.++. ....++++.++ . .+ + . .
T Consensus 589 ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a----~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 664 (864)
T TIGR02068 589 LADVKRVVVEVVLPDGYAVLNADDPMVAAMA----EKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDE 664 (864)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCHHHHHHH----HhCCCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCcc
Confidence 999999995 6888999999998765433 22333333322 0 00 0 0 0
Q ss_pred -----hhcccccCcc--hhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-----CCCcEEEEe
Q 006403 328 -----LKRLELSLSG--DHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-----LLGRAQIVY 395 (646)
Q Consensus 328 -----~~~v~l~L~G--~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-----~pGR~E~v~ 395 (646)
...+.+.+.| .||++|+++|+++++.+ |. .++.|.+||++|. ||||||++.
T Consensus 665 ~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l----gi-------------~~e~I~~gL~~F~~~~~~~pGR~e~~~ 727 (864)
T TIGR02068 665 VAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL----GV-------------PIELIRAGIRTFDADAAQAPGRFNLFN 727 (864)
T ss_pred ccccceeeeccccCCcccchHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhccccccCCCCceEEEE
Confidence 0123334445 89999999999999887 62 3688999999985 899999985
Q ss_pred ccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccc
Q 006403 396 DISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKT 475 (646)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (646)
.. ++.+|+||||||+|++++++.+++.
T Consensus 728 ~~---------------g~~vI~DyAHNP~a~~all~~l~~~-------------------------------------- 754 (864)
T TIGR02068 728 LG---------------GAHVLVDYGHNPAAIEAVGAAIRNW-------------------------------------- 754 (864)
T ss_pred eC---------------CcEEEEEcCCCHHHHHHHHHHHHhc--------------------------------------
Confidence 43 4789999999999999999987643
Q ss_pred cccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 476 KHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 476 ~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
+..++|+|||++++|+...+.+ +.+.+. ..||+++++.+.
T Consensus 755 ----~~~r~i~Vig~~gdr~~~~~~~-lg~~l~---~~~d~vil~~~~ 794 (864)
T TIGR02068 755 ----PARRRIGVIGGPGDRRDEDLVE-QGELLG---GAFDQIILKEDD 794 (864)
T ss_pred ----CCCCEEEEECCCCCCChhHHHH-HHHHHH---HhCCEEEEEeCC
Confidence 1246899999999998776543 444443 248999988765
No 13
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-38 Score=353.21 Aligned_cols=351 Identities=17% Similarity=0.186 Sum_probs=260.7
Q ss_pred cccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCC-CCCCcHHHHHHHHHhhhhhhh
Q 006403 26 VRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENL-PLSSSYENAMQALSSLITRQK 104 (646)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~y~~A~~~L~sl~~~~~ 104 (646)
..++-+|+...++.-|.+.+|.++.+.. | ...++++++..+.. +.+. +. ..+.. .
T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~-----~---~~~a~~~Gavav~~---~~~~~~~-~~~~~-------v----- 66 (475)
T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHD-----F---IAGAIAPGAVAVVV---EKDIKLA-EAGVP-------V----- 66 (475)
T ss_pred ccceeehhhcCCCcEEEEEecccccccc-----c---hHhHhhCCCEEEEe---ccccccc-ccCCC-------E-----
Confidence 6778899999999999999999888888 7 88999999998887 2111 10 00000 0
Q ss_pred cCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEE-
Q 006403 105 RGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRI- 183 (646)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~I- 183 (646)
.-. ..+..-...++..-|..|..++++|+||||||||||++++.++++..|++++++++-. ..+
T Consensus 67 ----i~V----~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~ 131 (475)
T COG0769 67 ----IVV----TGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELS 131 (475)
T ss_pred ----EEE----cCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eecc
Confidence 000 1111111122222355788889999999999999999999999999999999987644 222
Q ss_pred CCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC----CCccccccccCCcEE
Q 006403 184 NGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG----GEKDSTNVIKEPVVC 259 (646)
Q Consensus 184 nG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G----Gr~D~TNvi~~P~Va 259 (646)
.|... ......|..+.++.+ |+.+.+.+++++|||++++ +|.+.+.+ +++
T Consensus 132 ~~~~~--------------------~~~~tTP~~~~l~~~--~~~~~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~ 185 (475)
T COG0769 132 PGILE--------------------PTGLTTPEALDLQNL--LRDLLDRGAEIAVMEVSSHGLVQGRVEGVTF----DVG 185 (475)
T ss_pred CCccc--------------------ccCCCCccHHHHHHH--HHHHHHcCCcEEEEEeehhHHHhCCccCceE----EEE
Confidence 12211 112345888888888 7789999999999999998 68888887 688
Q ss_pred EEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-----------ccc
Q 006403 260 GVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-----------LDI 325 (646)
Q Consensus 260 VITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-----------~~~ 325 (646)
++|||+.||+|+|| |+|+|+..|..+|+ +...+|+|+|++..... +........+++.++. ++.
T Consensus 186 ~ftnls~DHlD~h~-t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 263 (475)
T COG0769 186 VFTNLSRDHLDYHG-TMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDY-KERLKNALGDYITYGCDFKRPDLDYRGIEE 263 (475)
T ss_pred eccccCchhhcccC-cHHHHHHHHHHHHhhcCCCccEEEccCCchHHHH-HHHHHhcCCCEEEeCCCCchhhhhhcccee
Confidence 99999999999999 99999999999985 56679999999876432 2333333324444321 100
Q ss_pred ------------cchhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEE
Q 006403 326 ------------EKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQ 392 (646)
Q Consensus 326 ------------~~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E 392 (646)
.....++++|+|.||++|+++|++++..+ | ..+++|+++|++++ ++||||
T Consensus 264 ~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~l----G-------------~~~e~i~~~l~~~~~v~GRmE 326 (475)
T COG0769 264 SSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALAL----G-------------VDLEDILAGLETLKPVPGRME 326 (475)
T ss_pred eeccceeEEEccCCceeEeccccchhHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhcCCCCCcce
Confidence 01245788999999999999999999987 7 24789999999999 999999
Q ss_pred EEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccccc
Q 006403 393 IVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKM 472 (646)
Q Consensus 393 ~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (646)
.+..+ ++.++|||||||+|++++++.++..
T Consensus 327 ~v~~~---------------~~~v~VDyAHnPd~le~~L~~~~~~----------------------------------- 356 (475)
T COG0769 327 LVNIG---------------GKLVIVDYAHNPDGLEKALRAVRLH----------------------------------- 356 (475)
T ss_pred EecCC---------------CCeEEEEeccChHHHHHHHHHHHhh-----------------------------------
Confidence 99865 4789999999999999999987743
Q ss_pred ccccccccCccEEEEEecCCCCChhh--hHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 473 EKTKHANKISKQILLFNCMEARHPQV--LLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 473 ~~~~~~~~~~~~ilvFg~~~dRd~~~--ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
..+++|+||||.||||... ++..++. ...|.+|+++++
T Consensus 357 -------~~g~li~VfG~gGDrD~~kr~~mg~ia~------~~ad~vivt~dn 396 (475)
T COG0769 357 -------AAGRLIVVFGCGGDRDKSKRPDMGAIAE------QLADIVIVTSDN 396 (475)
T ss_pred -------cCCcEEEEECccCCCCcccccchHHHHH------hcCCcEEEcCCC
Confidence 1346999999999999874 3444432 245667766654
No 14
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=7.8e-38 Score=346.56 Aligned_cols=337 Identities=19% Similarity=0.229 Sum_probs=234.4
Q ss_pred ccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchh-hcCCCCCCcHHHHHHHHHhhhhhh
Q 006403 25 SVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEY-EENLPLSSSYENAMQALSSLITRQ 103 (646)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~y~~A~~~L~sl~~~~ 103 (646)
.....+|||...|+.-|++++|.|+.+.. | +.+|+++++..+..... +.+.|.- -.++..++|.
T Consensus 24 i~~v~~DSR~v~~g~lFval~G~~~dGh~-----f---i~~A~~~Ga~~vv~~~~~~~~~p~i-~v~d~~~al~------ 88 (453)
T PRK10773 24 IDAVTTDTRKVTPGCLFVALKGERFDAHD-----F---ADDAKAAGAGALLVSRPLDIDLPQL-VVKDTRLAFG------ 88 (453)
T ss_pred eeEEEeeCCCCCCCcEEEEecCCCCCHHH-----H---HHHHHHCCCeEEEEecCcCCCCCEE-EECCHHHHHH------
Confidence 46789999999999999999999999988 9 99999999998887210 0011210 0112222221
Q ss_pred hcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEE
Q 006403 104 KRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRI 183 (646)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~I 183 (646)
++...+ +..+ ..++|+||||||||||+.||++||+..|..+ .++. +++..+
T Consensus 89 -------------------~la~~~-~~~~--~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~---~t~g--n~n~~~-- 139 (453)
T PRK10773 89 -------------------QLAAWV-RQQV--PARVVALTGSSGKTSVKEMTAAILRQCGNTL---YTAG--NLNNDI-- 139 (453)
T ss_pred -------------------HHHHHH-HhcC--CCCEEEEcCCCchHHHHHHHHHHHHhcCccc---ccCc--cccCCc--
Confidence 111111 1122 2589999999999999999999999998753 3333 111111
Q ss_pred CCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCccccccccCCcEEEE
Q 006403 184 NGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPVVCGV 261 (646)
Q Consensus 184 nG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~TNvi~~P~VaVI 261 (646)
|.|. +.+ ....++|++|+|+|+. |+++..--+.+|+++||
T Consensus 140 -G~~~---------------------------~~~----------~~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaVi 181 (453)
T PRK10773 140 -GVPL---------------------------TLL----------RLTPEHDYAVIELGANHQGEIAYTVSLTRPEAALV 181 (453)
T ss_pred -cccc---------------------------HHh----------cCCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEE
Confidence 2111 000 0234689999999975 77765433337999999
Q ss_pred ccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHh-----cC------ccEEEe----cc-
Q 006403 262 TSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALE-----LM------VPLEVA----AP- 322 (646)
Q Consensus 262 TnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~-----~~------~~l~~~----~~- 322 (646)
|||+.||+|+|| |+|+|+.+|+.||+ ++..+|+|.|++....+.. .... .+ +++... ..
T Consensus 182 TNI~~dHld~~g-s~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~-~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~ 259 (453)
T PRK10773 182 NNLAAAHLEGFG-SLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQS-VIGSKTVWRFSPNAANSVDFTATNIHVTSH 259 (453)
T ss_pred eCCCHHHHhhcC-CHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHH-HhcCCcEEEEeCCCCCcCcEEEEEEEEeCC
Confidence 999999999999 99999999999996 4567899999886543322 1111 00 112110 00
Q ss_pred ---cccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEe
Q 006403 323 ---LDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVY 395 (646)
Q Consensus 323 ---~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~ 395 (646)
+... ....+.++++|.||++|+++|++++..+ |. .++++.++|+++. ++||||++.
T Consensus 260 ~~~f~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----Gi-------------~~~~i~~~L~~~~~~~gR~e~v~ 322 (453)
T PRK10773 260 GTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAMSV----GA-------------TLDAVKAGLANLKAVPGRLFPIQ 322 (453)
T ss_pred eeEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCCceeEEE
Confidence 1000 0113678999999999999999999887 62 3688999999998 999999987
Q ss_pred ccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccccccc
Q 006403 396 DISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEK 474 (646)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (646)
.. ++..+|.| |||||+||+++++.++..
T Consensus 323 ~~--------------~g~~iIDDsYn~nP~s~~aaL~~l~~~------------------------------------- 351 (453)
T PRK10773 323 LA--------------EGQLLLDDSYNANVGSMTAAAQVLAEM------------------------------------- 351 (453)
T ss_pred CC--------------CCeEEEEcCCCCCHHHHHHHHHHHHhC-------------------------------------
Confidence 53 24666777 899999999999988653
Q ss_pred ccccccCccEEEEEecCCC--CChhhhHHHHHHHhhhcCCCccEEEEeC
Q 006403 475 TKHANKISKQILLFNCMEA--RHPQVLLPRLVSTCASSGTHFSKALFVP 521 (646)
Q Consensus 475 ~~~~~~~~~~ilvFg~~~d--Rd~~~ll~~L~~~~~~~~~~fd~~if~~ 521 (646)
..|+|+|||.|.+ .+...+.+.+.+.+.+. .+|.++++.
T Consensus 352 ------~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~--~~d~v~~~G 392 (453)
T PRK10773 352 ------PGYRVMVVGDMAELGAESEACHRQVGEAAKAA--GIDKVLSVG 392 (453)
T ss_pred ------CCCEEEEECChhhcchHHHHHHHHHHHHHHHc--CCCEEEEEC
Confidence 1267999999877 34557778887776543 479998874
No 15
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=7.5e-38 Score=348.99 Aligned_cols=348 Identities=17% Similarity=0.127 Sum_probs=237.6
Q ss_pred cccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhh-cCCCCCCcHHHHHHHHHhhhhh
Q 006403 24 FSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYE-ENLPLSSSYENAMQALSSLITR 102 (646)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~y~~A~~~L~sl~~~ 102 (646)
.....++|||...|+.-|+++.|.|+.+.. | +++|++++|..+...... ...+.. ..
T Consensus 27 ~i~~i~~DSR~v~~g~lFval~G~~~DGh~-----f---i~~A~~~GA~~~v~~~~~~~~~~~~------------~~-- 84 (479)
T PRK14093 27 DVTGISIDSRTLAPGDAYFAIKGDVHDGHA-----F---VAAALKAGAALAVVERAQRDKFAAD------------AP-- 84 (479)
T ss_pred ceeEEEeecCCCCCCCEEEEeccCcCChHH-----H---HHHHHHcCCcEEEEecccccccCCC------------CC--
Confidence 346789999999999999999999999988 9 999999999988872110 000000 00
Q ss_pred hhcCCCccccccCCChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCcccccccee
Q 006403 103 QKRGEQSHIAGRYGKLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERF 181 (646)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI 181 (646)
.-.++++++.|..|+.. ....++++|+||||||||||+.|++++|+..|.++++.++- +-.
T Consensus 85 ------------~i~V~d~~~al~~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~-----n~~- 146 (479)
T PRK14093 85 ------------LLVVDDVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASF-----NNH- 146 (479)
T ss_pred ------------EEEECCHHHHHHHHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccC-----CCc-
Confidence 01123334444433310 01235689999999999999999999999998765443321 110
Q ss_pred EECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCccccccccCCcEE
Q 006403 182 RINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPVVC 259 (646)
Q Consensus 182 ~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~TNvi~~P~Va 259 (646)
.+.|. ++ .. ...+++++|+|+|+. |+++..--..+|+++
T Consensus 147 ------------------------------iG~p~-----~l---~~-~~~~~~~~V~E~g~s~~~e~~~~~~~~~Pdia 187 (479)
T PRK14093 147 ------------------------------WGVPL-----SL---AR-CPADARFAVFEIGMNHAGEIEPLVKMVRPHVA 187 (479)
T ss_pred ------------------------------cchhH-----HH---Hc-CCCCCcEEEEEeCCCCCchHHHHhcccCCCEE
Confidence 11121 11 11 235789999999975 444432223379999
Q ss_pred EEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCc-cEEEec---c----------
Q 006403 260 GVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMV-PLEVAA---P---------- 322 (646)
Q Consensus 260 VITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~-~l~~~~---~---------- 322 (646)
|||||+.||+++|| |+|+|+.+|..||+ ++..+|+|.|++....++. .+...+. .++.++ .
T Consensus 188 ViTNI~~DHLd~~g-t~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~-~~~~~~~~~vi~~g~~~~~~~~~~~~~~ 265 (479)
T PRK14093 188 IITTVEPVHLEFFS-GIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAA-SARAAGIARIVSFGADEKADARLLDVAL 265 (479)
T ss_pred EEcCCCHHHHhhcC-CHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHH-HhhhccCCcEEEEeCCCCccEEEEEEEE
Confidence 99999999999999 99999999999994 5678999999987655433 2221111 122211 0
Q ss_pred ------cccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEE
Q 006403 323 ------LDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQ 392 (646)
Q Consensus 323 ------~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E 392 (646)
+... ....+.++++|.||++|+++|++++..+ |. .+++++++|++++ .|||+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----Gi-------------~~~~i~~~l~~~~~~~gR~~ 328 (479)
T PRK14093 266 HADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAAAELA----GA-------------DLALAALALSQVQPAAGRGV 328 (479)
T ss_pred cCCceEEEEEECCceEEEEecCCCHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCcCCcce
Confidence 0000 0123678999999999999999999887 72 3688999999998 999999
Q ss_pred EEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccc
Q 006403 393 IVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHK 471 (646)
Q Consensus 393 ~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (646)
.++... ..++..||.| |||||+||+++++++++...
T Consensus 329 ~~r~~~-----------~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~-------------------------------- 365 (479)
T PRK14093 329 RHTLEV-----------GGGEATLIDESYNANPASMAAALGVLGRAPV-------------------------------- 365 (479)
T ss_pred EEEeec-----------CCCCEEEEECCCCCCHHHHHHHHHHHHhhhc--------------------------------
Confidence 875320 0023445555 99999999999998876510
Q ss_pred cccccccccCccEEEEEecCCCC--ChhhhHHHHHHHhhhcCCCccEEEEeC
Q 006403 472 MEKTKHANKISKQILLFNCMEAR--HPQVLLPRLVSTCASSGTHFSKALFVP 521 (646)
Q Consensus 472 ~~~~~~~~~~~~~ilvFg~~~dR--d~~~ll~~L~~~~~~~~~~fd~~if~~ 521 (646)
...+|+|+|||.|.++ ....+.+.+.+.+.+. .+|.++++.
T Consensus 366 -------~~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~--~~d~v~~~G 408 (479)
T PRK14093 366 -------GPQGRRIAVLGDMLELGPRGPELHRGLAEAIRAN--AIDLVFCCG 408 (479)
T ss_pred -------cCCCCEEEEECChHHcCcHHHHHHHHHHHHHHHc--CCCEEEEEc
Confidence 0135789999997442 2456677787776533 479999984
No 16
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=1.2e-36 Score=364.49 Aligned_cols=344 Identities=18% Similarity=0.124 Sum_probs=241.6
Q ss_pred ccccccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhh
Q 006403 21 NCQFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLI 100 (646)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~ 100 (646)
.-.......+|||...|+.-|++++|.++.+.. | +.+|++++|..+.+ +++.+.. ...
T Consensus 522 ~~~~i~~i~~dSr~v~~g~lFval~G~~~dGh~-----f---i~~A~~~GA~~~i~---~~~~~~~-----------~~~ 579 (958)
T PRK11929 522 SLPHAGAVSTDSRSVGRGELFVALRGENFDGHD-----Y---LPQAFAAGACAAVV---ERQVADV-----------DLP 579 (958)
T ss_pred cCcccCeEEeeCCccCCCCEEEEecCCCCCHHH-----H---HHHHHHcCCEEEEE---CCCccCC-----------CCC
Confidence 334446679999999999999999999999988 9 99999999999988 2221100 000
Q ss_pred hhhhcCCCccccccCCChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccc
Q 006403 101 TRQKRGEQSHIAGRYGKLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRE 179 (646)
Q Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~E 179 (646)
...+++++++|..|+.. ....+.++|+||||||||||+.|+++||+.+|.+.+.+.+++ +++.
T Consensus 580 --------------~i~V~d~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~g--n~n~ 643 (958)
T PRK11929 580 --------------QIVVDDTRAALGRLATAWRARFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEG--NFNN 643 (958)
T ss_pred --------------EEEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCc--ccCC
Confidence 01233444444444411 011245899999999999999999999999977766666665 1111
Q ss_pred eeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCccccccccCCc
Q 006403 180 RFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPV 257 (646)
Q Consensus 180 RI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~TNvi~~P~ 257 (646)
. .+.| ++++ -...+.|++|+|+|++ |+++.+.-+.+|+
T Consensus 644 ~-------------------------------~g~~-----~~l~----~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pd 683 (958)
T PRK11929 644 E-------------------------------IGVP-----LTLL----RLRAQHRAAVFELGMNHPGEIAYLAAIAAPT 683 (958)
T ss_pred C-------------------------------cchH-----HHHh----cCCCCCcEEEEEeCCCCCccHHHHhCccCCC
Confidence 0 1112 1111 1246789999999987 5666654444799
Q ss_pred EEEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEec-----cc------
Q 006403 258 VCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA-----PL------ 323 (646)
Q Consensus 258 VaVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~-----~~------ 323 (646)
++|||||+.||+++|| |+|+|+.+|+.||+ ++..+|+|.|++...... +.+.. ..++.++ ++
T Consensus 684 iaViTNI~~dHLd~~~-s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~-~~~~~--~~~~~fg~~~~~~~~~~~~~ 759 (958)
T PRK11929 684 VALVTNAQREHQEFMH-SVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWA-KLAGA--RRVLRFGLQPGADVYAEKIA 759 (958)
T ss_pred EEEEcCCcHHHhhhcC-CHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHH-HhhcC--CcEEEEeCCCCcceEeeecc
Confidence 9999999999999999 89999999999995 466789999988654332 22211 1111110 00
Q ss_pred ------c-----cc-----chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-
Q 006403 324 ------D-----IE-----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH- 386 (646)
Q Consensus 324 ------~-----~~-----~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~- 386 (646)
. .. ....+.++++|.||++|+++|++++..+ |. .++++.++|++++
T Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----Gi-------------~~~~i~~~L~~f~~ 822 (958)
T PRK11929 760 KDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAA----GA-------------SLKQIRAGLERFQP 822 (958)
T ss_pred cceeecCCCceEEEEEECCceEEEEeCCCcHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHhhCCC
Confidence 0 00 0123568999999999999999999887 62 3788999999998
Q ss_pred CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhc
Q 006403 387 LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRN 465 (646)
Q Consensus 387 ~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (646)
+|||||++... ++..||+| |||||+|++++++.|+..
T Consensus 823 ~~gR~e~~~~~--------------~~~~iidDsya~np~s~~aaL~~l~~~---------------------------- 860 (958)
T PRK11929 823 VAGRMQRRRLS--------------CGTRIIDDTYNANPDSMRAAIDVLAEL---------------------------- 860 (958)
T ss_pred CCCCceEEEcC--------------CCcEEEEcCCCCCHHHHHHHHHHHHhc----------------------------
Confidence 99999998753 25788999 899999999999988653
Q ss_pred cccccccccccccccCccEEEEEecCCC-CChhhhH-HHHHHHhhhcCCCccEEEEeC
Q 006403 466 GYIGHKMEKTKHANKISKQILLFNCMEA-RHPQVLL-PRLVSTCASSGTHFSKALFVP 521 (646)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ilvFg~~~d-Rd~~~ll-~~L~~~~~~~~~~fd~~if~~ 521 (646)
+..++|+|||++++ +|..... +.+.+.+.+. .++.++++.
T Consensus 861 --------------~~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~--~~~~vi~~G 902 (958)
T PRK11929 861 --------------PNGPRALVLGDMLELGDNGPAMHREVGKYARQL--GIDALITLG 902 (958)
T ss_pred --------------cCCCEEEEECCchhcCcHHHHHHHHHHHHHHHc--CCCEEEEEC
Confidence 11478999999987 6665543 4455544332 356777663
No 17
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=9.8e-36 Score=331.44 Aligned_cols=251 Identities=18% Similarity=0.213 Sum_probs=188.2
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCC
Q 006403 135 AELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPM 214 (646)
Q Consensus 135 ~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ 214 (646)
.+.++|+||||||||||++|+++||+..|.++++.++. |.|+.
T Consensus 120 ~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~~------------------------- 162 (480)
T PRK01438 120 RPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPVL------------------------- 162 (480)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHHH-------------------------
Confidence 35679999999999999999999999999987654321 11110
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCC-CcE
Q 006403 215 PPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ-IPA 293 (646)
Q Consensus 215 ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g-~~a 293 (646)
. ......+.|++|+|+|+++. +..+++ +|+++|||||++||+++|| |+|+|+.+|++||+++ ..+
T Consensus 163 ----~-------~~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~~~~~~~ 228 (480)
T PRK01438 163 ----D-------AVRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYEGTTVAC 228 (480)
T ss_pred ----H-------HHhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhCCCceE
Confidence 0 01134568999999999854 555666 6999999999999999999 9999999999999976 457
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEec-------ccc------------cc--c----hhc-ccccCcchhhHhhHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAA-------PLD------------IE--K----LKR-LELSLSGDHQLVNAGLA 347 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~-------~~~------------~~--~----~~~-v~l~L~G~hq~~NAalA 347 (646)
|+|.|++.+.+++.+.+.+.+++++.++ .+. .. . +.. .+++++|.||++|+++|
T Consensus 229 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 229 VYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 7888988887776655444444444321 000 00 0 001 24789999999999999
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHH
Q 006403 348 VSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAE 425 (646)
Q Consensus 348 ia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~ 425 (646)
++++..+ | ..++.+.+||++++ +|||||++...+ +..+|.| |||||+
T Consensus 309 ia~~~~l----g-------------i~~~~i~~~L~~~~~~~gR~E~i~~~~--------------~~~iiDDs~ahNp~ 357 (480)
T PRK01438 309 AALARSF----G-------------VPPAAVRDGLRAFRPDAHRIEHVADAD--------------GVTWVDDSKATNPH 357 (480)
T ss_pred HHHHHHc----C-------------CCHHHHHHHHHhCCCCCCceEEEEEEC--------------CEEEEecCccCCHH
Confidence 9998876 6 23688999999999 779999997542 3445555 899999
Q ss_pred HHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEe-cCCCCChhhhHHHHH
Q 006403 426 SMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFN-CMEARHPQVLLPRLV 504 (646)
Q Consensus 426 sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg-~~~dRd~~~ll~~L~ 504 (646)
|++++++.+ .++++||| .+.++|...+++.|.
T Consensus 358 a~~aaL~~l-----------------------------------------------~~i~~I~gG~~~~kd~~~~~~~l~ 390 (480)
T PRK01438 358 AAAASLAAY-----------------------------------------------PSVVWIAGGLAKGADFDDLVRRAA 390 (480)
T ss_pred HHHHHHHhC-----------------------------------------------CCEEEEEecccCCCCHHHHHHHHH
Confidence 999977632 15789996 899999999988776
Q ss_pred HHhhhcCCCccEEEEeC
Q 006403 505 STCASSGTHFSKALFVP 521 (646)
Q Consensus 505 ~~~~~~~~~fd~~if~~ 521 (646)
+ .++++++++
T Consensus 391 ~-------~~~~vi~~g 400 (480)
T PRK01438 391 G-------RLRGVVLIG 400 (480)
T ss_pred h-------hceEEEEEC
Confidence 4 357777773
No 18
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=1.6e-35 Score=349.69 Aligned_cols=345 Identities=17% Similarity=0.200 Sum_probs=240.2
Q ss_pred ccccccccccC--CcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhh
Q 006403 25 SVRKKWSFTSL--PASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITR 102 (646)
Q Consensus 25 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~ 102 (646)
.....+|||.. .|+.-|+++.|.++.++. | +.++++++|..+....+ ..| ++.. ....
T Consensus 24 i~~i~~DSR~v~~~~g~lFval~G~~~DGh~-----f---i~~A~~~GA~~iv~~~~--~~~-----~~~~---~~~~-- 83 (822)
T PRK11930 24 IDQILTDSRSLSFPENTLFFALKGERNDGHR-----Y---IQELYEKGVRNFVVSEE--KHP-----EESY---PDAN-- 83 (822)
T ss_pred eCEEEecCCccCCCCCcEEEEeCCCCCCHHH-----H---HHHHHHCCCEEEEEecc--ccc-----cccC---CCCC--
Confidence 46789999999 999999999999999988 9 99999999999888221 111 0000 0000
Q ss_pred hhcCCCccccccCCChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCcccccccee
Q 006403 103 QKRGEQSHIAGRYGKLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERF 181 (646)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI 181 (646)
...+++++++|..|+.. .+..++++|+||||||||||+.|+++||+..|..++ ++. +++.+
T Consensus 84 ------------~i~V~d~~~al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~n~~- 145 (822)
T PRK11930 84 ------------FLKVKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SYNSQ- 145 (822)
T ss_pred ------------EEEECCHHHHHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--ccCcc-
Confidence 01233444444444411 134567899999999999999999999998775432 232 11111
Q ss_pred EECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCccccccccCCcEE
Q 006403 182 RINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPVVC 259 (646)
Q Consensus 182 ~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~TNvi~~P~Va 259 (646)
.+.|. ++ . ....++|++|+|+|+. |..+...-+.+|+++
T Consensus 146 ------------------------------ig~p~-----~~---~-~~~~~~~~~V~E~s~s~~~~~~~l~~~~~Pdia 186 (822)
T PRK11930 146 ------------------------------IGVPL-----SV---W-QLNEEHELGIFEAGISQPGEMEALQKIIKPTIG 186 (822)
T ss_pred ------------------------------hhHHH-----HH---h-cCCCCCcEEEEEeCCCCCChHHHHhhhhCCCEE
Confidence 11121 11 0 1346899999999976 455533322379999
Q ss_pred EEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhc----------CccEEEec----c---
Q 006403 260 GVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALEL----------MVPLEVAA----P--- 322 (646)
Q Consensus 260 VITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~----------~~~l~~~~----~--- 322 (646)
|||||+.||+|+|| |+|+|+.+|+.||+....+|+|.|++....++.+..... .+.++... .
T Consensus 187 ViTNI~~dHLd~~g-t~e~y~~aK~~i~~~~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~ 265 (822)
T PRK11930 187 ILTNIGGAHQENFR-SIKQKIMEKLKLFKDCDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHT 265 (822)
T ss_pred EEcCccHHHHhhcC-CHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCce
Confidence 99999999999999 999999999999998777899999887655443321110 01111100 0
Q ss_pred -cccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEecc
Q 006403 323 -LDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDI 397 (646)
Q Consensus 323 -~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~ 397 (646)
+... ....+.++++|.||++|+++|++++..+ |. .++++.++|++++ +|||||++...
T Consensus 266 ~~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----Gi-------------~~~~i~~~L~~f~~~~gR~e~~~~~ 328 (822)
T PRK11930 266 VISYTYKGEDFHFEIPFIDDASIENLIHCIAVLLYL----GY-------------SADQIQERMARLEPVAMRLEVKEGI 328 (822)
T ss_pred EEEEEeCCceEEEEecCCCHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCCeeEEEEcC
Confidence 1100 0124678999999999999999999887 62 3688999999998 99999998754
Q ss_pred CCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccccccccc
Q 006403 398 SLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTK 476 (646)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (646)
+++.+|+| |||||+|++++++.|+...
T Consensus 329 --------------~g~~vIdDSyn~nP~s~~aaL~~l~~~~-------------------------------------- 356 (822)
T PRK11930 329 --------------NNCTLINDSYNSDLQSLDIALDFLNRRS-------------------------------------- 356 (822)
T ss_pred --------------CCcEEEECCCCCCHHHHHHHHHHHHhcc--------------------------------------
Confidence 25789999 8999999999999886541
Q ss_pred ccccCccEEEEEecCCC--CChhhhHHHHHHHhhhcCCCccEEEEeC
Q 006403 477 HANKISKQILLFNCMEA--RHPQVLLPRLVSTCASSGTHFSKALFVP 521 (646)
Q Consensus 477 ~~~~~~~~ilvFg~~~d--Rd~~~ll~~L~~~~~~~~~~fd~~if~~ 521 (646)
...++|+|+|.+.+ .+...+.+.+.+.+... .+++++++.
T Consensus 357 ---~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~~~--~i~~vi~~G 398 (822)
T PRK11930 357 ---QSKKKTLILSDILQSGQSPEELYRKVAQLISKR--GIDRLIGIG 398 (822)
T ss_pred ---cCCCEEEEECChHhcCchHHHHHHHHHHHHHHc--CCCEEEEEC
Confidence 12368999998754 34556677777766532 478888864
No 19
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-34 Score=320.38 Aligned_cols=213 Identities=23% Similarity=0.232 Sum_probs=161.3
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCC
Q 006403 136 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 215 (646)
Q Consensus 136 ~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~p 215 (646)
+.++|+||||||||||++|+.+||+..|+++.+-++- |.|+.
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gni------------g~~~~-------------------------- 154 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNI------------GTAVL-------------------------- 154 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCcc------------chhhh--------------------------
Confidence 4489999999999999999999999999876532210 11110
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCC--CcE
Q 006403 216 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ--IPA 293 (646)
Q Consensus 216 s~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g--~~a 293 (646)
. + ....+.|++|+|+|+.. +|.||++ +|+++|||||++||+++|| |+|+|+.+|++||++. .++
T Consensus 155 -------~--~--~~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 155 -------T--L--EPPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred -------h--c--ccCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 0 0 01236799999999875 7999998 6999999999999999999 8999999999999987 789
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEecc-c----cc----c---ch-h-------cc--cccCcchhhHhhHHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAAP-L----DI----E---KL-K-------RL--ELSLSGDHQLVNAGLAVSLS 351 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~----~~----~---~~-~-------~v--~l~L~G~hq~~NAalAia~a 351 (646)
|++.|++.+..+.. .+...+++++.++. . +. . .. . .+ .++++|.||++|+++|++++
T Consensus 221 V~n~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa~ 299 (460)
T PRK01390 221 VIGVDDAYCRAIAD-RLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAAA 299 (460)
T ss_pred EEeCCCHHHHHHHH-hccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHHH
Confidence 99999887666543 33223445443321 0 00 0 00 0 11 14789999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHH
Q 006403 352 ECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEA 429 (646)
Q Consensus 352 ~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a 429 (646)
..+ |. .++.+.+||+++. ||||||++... ++..||+| |||||+|+++
T Consensus 300 ~~l----gi-------------~~~~i~~gL~~~~~~~gR~e~i~~~--------------~g~~vIdDs~ahNp~s~~~ 348 (460)
T PRK01390 300 RAL----GL-------------SPEEIAAGLASFPGLAHRMEQVGRR--------------GGVLFVNDSKATNADAAAK 348 (460)
T ss_pred HHc----CC-------------CHHHHHHHHHhCCCCCCceEEEeee--------------CCcEEEEcCCCCCHHHHHH
Confidence 887 62 3688999999996 99999999754 24678889 8999999998
Q ss_pred HHH
Q 006403 430 CAK 432 (646)
Q Consensus 430 ~l~ 432 (646)
+++
T Consensus 349 aL~ 351 (460)
T PRK01390 349 ALS 351 (460)
T ss_pred HHH
Confidence 666
No 20
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5e-34 Score=315.29 Aligned_cols=209 Identities=21% Similarity=0.273 Sum_probs=161.4
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+++||+++|+++.+-++ |. .|.
T Consensus 109 ~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggn----------------ig------------------------~p~- 147 (448)
T PRK03803 109 PVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGN----------------IG------------------------TPA- 147 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecC----------------cC------------------------HHH-
Confidence 7999999999999999999999999987655332 11 111
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeC
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 297 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~ 297 (646)
+. ....+.|++|+|+|+.. +|.++.+ +|+++|||||++||+|+|| |+|+|+.+|++|++++..+|++.
T Consensus 148 ---~~------~~~~~~~~~V~E~ss~~-l~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~n~ 215 (448)
T PRK03803 148 ---LD------LLSDDPELYVLELSSFQ-LETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVFNR 215 (448)
T ss_pred ---HH------HhcCCCCEEEEEcChhh-hCcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEEeC
Confidence 00 11235799999998863 4788887 6999999999999999999 89999999999999888899999
Q ss_pred CchHHHHHHHHHHHhcCccEEEec--------------c---ccccc----hhcccccCcchhhHhhHHHHHHHHHHHHH
Q 006403 298 QLSEAMSVLQDRALELMVPLEVAA--------------P---LDIEK----LKRLELSLSGDHQLVNAGLAVSLSECWLR 356 (646)
Q Consensus 298 q~~~~~~vl~~~a~~~~~~l~~~~--------------~---~~~~~----~~~v~l~L~G~hq~~NAalAia~a~~ll~ 356 (646)
|++.+..+... ..+++.++ . +.... ...+.++++|.||++|+++|++++..+
T Consensus 216 dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l-- 288 (448)
T PRK03803 216 DDALTRPLVPD-----NQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA-- 288 (448)
T ss_pred CCHHHHHHhhc-----CCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc--
Confidence 98876554321 11222111 0 00000 112568899999999999999999987
Q ss_pred hcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHHHH
Q 006403 357 RTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKWF 434 (646)
Q Consensus 357 ~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~~~ 434 (646)
|. .++.+.++|++|. ||||||++... +++.||+|+ ||||+|+.++++.+
T Consensus 289 --gi-------------~~~~i~~~L~~f~g~~~R~e~v~~~--------------~gv~~idDs~atN~~a~~~al~~l 339 (448)
T PRK03803 289 --GL-------------PKEAMLEVLRTFTGLPHRCEWVREV--------------AGVDYYNDSKGTNVGATVAAIEGL 339 (448)
T ss_pred --CC-------------CHHHHHHHHhhCCCCCCceEEEEEe--------------CCeEEEEcCCcCCHHHHHHHHHhh
Confidence 62 4788999999998 99999999754 257888895 99999999999976
Q ss_pred H
Q 006403 435 S 435 (646)
Q Consensus 435 ~ 435 (646)
.
T Consensus 340 ~ 340 (448)
T PRK03803 340 G 340 (448)
T ss_pred h
Confidence 4
No 21
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-33 Score=310.88 Aligned_cols=340 Identities=20% Similarity=0.228 Sum_probs=250.8
Q ss_pred ccccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCC---CCcHHHHHHHHHhh
Q 006403 23 QFSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPL---SSSYENAMQALSSL 99 (646)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~y~~A~~~L~sl 99 (646)
+...+..+|+|...|+..|.+|+|+|+.+.. | +.++++++|..++......+.+. .....+++++|..|
T Consensus 22 ~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~-----f---i~~A~~~GA~a~~v~r~~~~~~~~~~~~~V~d~~~al~~l 93 (451)
T COG0770 22 VVVSGVSIDSRKVKPGDLFVALKGERFDGHD-----F---IEQALAAGAAAVLVARPVLPPAIPLVVLLVLDTLEALGKL 93 (451)
T ss_pred cceeeEEeecccCCCCceeEEccCccccccc-----h---HHHHHhcCCEEEEEecCcCCcccccceEEeHHHHHHHHHH
Confidence 4568899999999999999999999999998 8 88899999999998322222221 12346666666555
Q ss_pred hhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccc
Q 006403 100 ITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRE 179 (646)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~E 179 (646)
.... .+ ..+.++|+|||++|||||..|+++||+..|. ++.||+ ++|
T Consensus 94 a~~~---------------------~~-------~~~~kvIaITGS~GKTTTKe~la~iL~~~~~---v~~t~g--n~N- 139 (451)
T COG0770 94 AKAY---------------------RQ-------KFNAKVIAITGSNGKTTTKEMLAAILSTKGK---VHATPG--NFN- 139 (451)
T ss_pred HHHH---------------------HH-------hcCCcEEEEeCCCCcHHHHHHHHHHHhhcCe---EecCCC--ccC-
Confidence 4421 11 1245899999999999999999999999553 578887 333
Q ss_pred eeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCccccccccCCc
Q 006403 180 RFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPV 257 (646)
Q Consensus 180 RI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~TNvi~~P~ 257 (646)
++++.| +|++. ...+.|++|+|+|+. |+++-+--+.+|+
T Consensus 140 ------------------------------n~iGlP-----ltll~----~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~ 180 (451)
T COG0770 140 ------------------------------NEIGLP-----LTLLR----LPADTEYAVLEMGMNHPGEIAELSEIARPD 180 (451)
T ss_pred ------------------------------ccccch-----hHHHh----CCCcccEEEEEcCCCCCCcHHHHhcccCCC
Confidence 222333 22321 344699999999998 7777766666899
Q ss_pred EEEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhc-CccEEEec-----ccc----
Q 006403 258 VCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALEL-MVPLEVAA-----PLD---- 324 (646)
Q Consensus 258 VaVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~-~~~l~~~~-----~~~---- 324 (646)
+++||||+.+|++++| ++|.||++|+.|+. ++..+|++.|++. +...+.+. ...++.++ ++.
T Consensus 181 iavItnIg~aHle~fg-s~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~----~~~~~~~~~~~~v~~fg~~~~~d~~~~~i 255 (451)
T COG0770 181 IAVITNIGEAHLEGFG-SREGIAEAKAEILAGLRPEGIAILNADNPL----LKNWAAKIGNAKVLSFGLNNGGDFRATNI 255 (451)
T ss_pred EEEEcChhHHHHHhcC-CHHHHHHHHHHHHhccCCCcEEEEECccHH----HHHHHhhcCCCcEEEEcCCCCCceeeEEE
Confidence 9999999999999999 79999999999997 4555888888775 23333322 23333333 111
Q ss_pred ----------ccc---hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCc
Q 006403 325 ----------IEK---LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGR 390 (646)
Q Consensus 325 ----------~~~---~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR 390 (646)
... ...+.++++|.||+.|+++|++++..+ |. ..++|++||+.+. .+||
T Consensus 256 ~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~l----G~-------------~~e~i~~~L~~~~~~~gR 318 (451)
T COG0770 256 HLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALEL----GL-------------DLEEIAAGLKELKPVKGR 318 (451)
T ss_pred EEcCCceEEEEEecCceEEEEecCCcHhHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhcCCCCcc
Confidence 100 114889999999999999999999998 72 3789999999998 8999
Q ss_pred EEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccc
Q 006403 391 AQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIG 469 (646)
Q Consensus 391 ~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (646)
+|.+... +|.++|.| |.-||+||.++++.+...-
T Consensus 319 ~~~~~~~--------------~g~~iIdD~YNAnp~sm~aai~~l~~~~------------------------------- 353 (451)
T COG0770 319 LEVILLA--------------NGKTLIDDSYNANPDSMRAALDLLAALP------------------------------- 353 (451)
T ss_pred ceeEecC--------------CCcEEEEcCCCCCHHHHHHHHHHHhhCc-------------------------------
Confidence 9944433 35677888 5999999999999776651
Q ss_pred cccccccccccCccEEEEEecCCC--CChhhhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 470 HKMEKTKHANKISKQILLFNCMEA--RHPQVLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 470 ~~~~~~~~~~~~~~~ilvFg~~~d--Rd~~~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
..+.|+|.|.|.+ .+...+...+.+.+.+. .+|.++++.+.
T Consensus 354 -----------~~~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~--~~d~v~~~G~~ 396 (451)
T COG0770 354 -----------GRKGIAVLGDMLELGEESEELHEEVGEYAVEA--GIDLVFLVGEL 396 (451)
T ss_pred -----------cCCcEEEeCChhhhCccHHHHHHHHHHHHHhc--CceEEEEEccc
Confidence 1223999999876 45678888888776543 38999998764
No 22
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.3e-33 Score=311.78 Aligned_cols=212 Identities=20% Similarity=0.218 Sum_probs=159.9
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||+.|+.+||+..|.++.+.++- |.|+..
T Consensus 110 ~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~-------------------------- 151 (445)
T PRK04308 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLE-------------------------- 151 (445)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHH--------------------------
Confidence 479999999999999999999999999876443321 212110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEe
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 296 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~ 296 (646)
. +..-..+++|++|+|+|+ +++|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++..+|++
T Consensus 152 ---~-----~~~~~~~~~d~~VlE~~~-~~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n 220 (445)
T PRK04308 152 ---A-----ELQREGKKADVWVLELSS-FQLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLN 220 (445)
T ss_pred ---H-----HHhhcCCCCcEEEEEeCh-HHhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEe
Confidence 0 000012478999999996 567888887 7999999999999999999 9999999999999998889999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEec-----ccc---------cc--ch-hcccccCcchhhHhhHHHHHHHHHHHHHhcC
Q 006403 297 PQLSEAMSVLQDRALELMVPLEVAA-----PLD---------IE--KL-KRLELSLSGDHQLVNAGLAVSLSECWLRRTG 359 (646)
Q Consensus 297 ~q~~~~~~vl~~~a~~~~~~l~~~~-----~~~---------~~--~~-~~v~l~L~G~hq~~NAalAia~a~~ll~~~G 359 (646)
.|++...... +.+.+++.++ ++. .. .. ..+.++++|.||++|+++|++++..+ |
T Consensus 221 ~dd~~~~~~~-----~~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g 291 (445)
T PRK04308 221 ADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV----G 291 (445)
T ss_pred CCcHHHHHHh-----hcCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----C
Confidence 9887644322 1233333332 110 00 01 12568899999999999999999887 6
Q ss_pred CCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHHH
Q 006403 360 NWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKW 433 (646)
Q Consensus 360 ~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~~ 433 (646)
. .++++.++|++++ ||||||++... ++..||.|+ +|||+|++++++.
T Consensus 292 i-------------~~~~i~~~L~~f~~~~~R~e~~~~~--------------~~~~~iDDs~~~n~~s~~~al~~ 340 (445)
T PRK04308 292 L-------------PREALLEHVKTFQGLPHRVEKIGEK--------------NGVVFIDDSKGTNVGATAAAIAG 340 (445)
T ss_pred C-------------CHHHHHHHHhhCCCCCCceEEEEee--------------CCeEEEEcCCCCCHHHHHHHHHh
Confidence 2 3688999999998 99999999764 245666675 8999999998773
No 23
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1e-33 Score=313.27 Aligned_cols=250 Identities=18% Similarity=0.152 Sum_probs=185.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||++|+.+||+.+|++++..+. | |.|++..
T Consensus 109 ~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gn---------i---G~~~~~~------------------------- 151 (459)
T PRK02705 109 IPWVGITGTNGKTTVTALLAHILQAAGLNAPACGN---------I---GYAACEL------------------------- 151 (459)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecc---------c---ChhHHHH-------------------------
Confidence 47999999999999999999999999987654221 0 2222110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEe
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 296 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~ 296 (646)
. . +......+.|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|++
T Consensus 152 --~--~---~~~~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vln 221 (459)
T PRK02705 152 --A--L---LRSGKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRILN 221 (459)
T ss_pred --H--h---hhhccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEEE
Confidence 0 0 011134578999999998 578888876 7999999999999999999 9999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCccEEE-ecc---------cc-------cc---c-hhcccccCcchhhHhhHHHHHHHHHHHH
Q 006403 297 PQLSEAMSVLQDRALELMVPLEV-AAP---------LD-------IE---K-LKRLELSLSGDHQLVNAGLAVSLSECWL 355 (646)
Q Consensus 297 ~q~~~~~~vl~~~a~~~~~~l~~-~~~---------~~-------~~---~-~~~v~l~L~G~hq~~NAalAia~a~~ll 355 (646)
.|++++..+..+. ...+.. ... +. .. . .....++++|.||+.|+++|++++..+
T Consensus 222 ~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l- 296 (459)
T PRK02705 222 GDDPYLRQHRSSW----PKGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLA- 296 (459)
T ss_pred CCCHHHHHHHhcC----CceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHc-
Confidence 9998766543321 111111 000 00 00 0 011357899999999999999999887
Q ss_pred HhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHH
Q 006403 356 RRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKW 433 (646)
Q Consensus 356 ~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~ 433 (646)
| ..++.+.++|++|. ||||||++... +++.||+| +||||+|+++++++
T Consensus 297 ---g-------------v~~~~i~~~L~~f~~~~gR~e~~~~~--------------~~~~ii~Ds~a~N~~s~~~al~~ 346 (459)
T PRK02705 297 ---G-------------LSAEAIAEALRSFPGVPHRLERIGTI--------------NGIDFINDSKATNYDAAEVGLKA 346 (459)
T ss_pred ---C-------------CCHHHHHHHHHhCCCCCCceEEEEee--------------CCcEEEEeCCCCCHHHHHHHHHh
Confidence 6 24788999999997 99999998754 24789999 79999999999874
Q ss_pred HHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEec-CCCCChhhhHHHHHHHhhhcCC
Q 006403 434 FSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNC-MEARHPQVLLPRLVSTCASSGT 512 (646)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~-~~dRd~~~ll~~L~~~~~~~~~ 512 (646)
+. .++|+|+|. ..++|...+++.+..
T Consensus 347 l~----------------------------------------------~~~i~IlGg~~~~~d~~~~~~~l~~------- 373 (459)
T PRK02705 347 VP----------------------------------------------GPVILIAGGEAKQGDDSAWLKQIKA------- 373 (459)
T ss_pred CC----------------------------------------------CCeEEEecCccCCCCHHHHHHHHHh-------
Confidence 31 257888874 557888888866642
Q ss_pred CccEEEEeC
Q 006403 513 HFSKALFVP 521 (646)
Q Consensus 513 ~fd~~if~~ 521 (646)
..++++++.
T Consensus 374 ~~~~vi~~g 382 (459)
T PRK02705 374 KAAAVLLFG 382 (459)
T ss_pred heeEEEEEC
Confidence 357788774
No 24
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=9.8e-34 Score=314.29 Aligned_cols=213 Identities=21% Similarity=0.229 Sum_probs=155.9
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+.+||+++|++...+ +.|..-. .+.+.
T Consensus 108 ~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~-------------~gg~~~~----------------------~~~~~- 151 (461)
T PRK00421 108 TSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFL-------------IGGILNA----------------------AGTNA- 151 (461)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhcCCCCeEE-------------ECceecc----------------------CCccc-
Confidence 79999999999999999999999999653222 1121000 00010
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhccc---CCCCcEE
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF---KPQIPAF 294 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIf---k~g~~av 294 (646)
...+.|++|+|+|+... .... + +|+++|||||++||+|+|| |+|+|+..|..|+ +++..+|
T Consensus 152 ------------~~~~~~~~V~E~ss~q~-~~~~-~-~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~V 215 (461)
T PRK00421 152 ------------RLGNSDYFVAEADESDR-SFLK-L-HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGALV 215 (461)
T ss_pred ------------ccCCCCEEEEECCCccc-hHhh-c-CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 11357999999987632 1122 2 7999999999999999999 9999998877655 5566788
Q ss_pred EeCCchHHHHHHHHHHHhcCccEEEec-----c--------------cccc----chhcccccCcchhhHhhHHHHHHHH
Q 006403 295 TVPQLSEAMSVLQDRALELMVPLEVAA-----P--------------LDIE----KLKRLELSLSGDHQLVNAGLAVSLS 351 (646)
Q Consensus 295 ~~~q~~~~~~vl~~~a~~~~~~l~~~~-----~--------------~~~~----~~~~v~l~L~G~hq~~NAalAia~a 351 (646)
++.|++.+..+..+. .++++.++ + |... .+..+.++++|.||++|+++|++++
T Consensus 216 ~n~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~~ 291 (461)
T PRK00421 216 ACGDDPELRELLPRV----SRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAVA 291 (461)
T ss_pred EECCCHHHHHHHHhc----CCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 999888766554332 12332221 0 0000 0113668899999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHH
Q 006403 352 ECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 430 (646)
Q Consensus 352 ~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~ 430 (646)
..+ | ..++++.++|++|+ ||||||++... +++.||+||||||++++++
T Consensus 292 ~~l----g-------------v~~~~i~~~l~~f~~~~~R~e~~~~~--------------~g~~~i~D~aHnp~~~~a~ 340 (461)
T PRK00421 292 LEL----G-------------IDDEAIREALATFKGVKRRFEEKGEV--------------GGVVLIDDYAHHPTEIKAT 340 (461)
T ss_pred HHc----C-------------CCHHHHHHHHHhCCCCCcccEEEEec--------------CCcEEEEeCCCCHHHHHHH
Confidence 887 6 23788999999997 99999999764 2578999999999999999
Q ss_pred HHHHHhh
Q 006403 431 AKWFSSV 437 (646)
Q Consensus 431 l~~~~~~ 437 (646)
++.++..
T Consensus 341 ~~al~~~ 347 (461)
T PRK00421 341 LKAARQG 347 (461)
T ss_pred HHHHHhh
Confidence 9988764
No 25
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-33 Score=310.30 Aligned_cols=210 Identities=20% Similarity=0.257 Sum_probs=161.7
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||++||.+||+..|+++++.++. |. |.
T Consensus 105 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------g~----------------------------p~ 144 (438)
T PRK03806 105 APIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNI------------GL----------------------------PA 144 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCc------------ch----------------------------hH
Confidence 369999999999999999999999999987654321 11 11
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEe
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 296 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~ 296 (646)
+ .....+.|++|+|+|+.+ +|.++.+ +|+++|||||+.||+|+||+|+|+|+.+|++|++....+|++
T Consensus 145 ----~------~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~n 212 (438)
T PRK03806 145 ----L------SLLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 212 (438)
T ss_pred ----H------HhhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEEe
Confidence 0 013456799999998874 4678887 699999999999999999779999999999999988889999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEec----cc----------cc---c-chhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 006403 297 PQLSEAMSVLQDRALELMVPLEVAA----PL----------DI---E-KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358 (646)
Q Consensus 297 ~q~~~~~~vl~~~a~~~~~~l~~~~----~~----------~~---~-~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~ 358 (646)
.|++.+..+.. . ...+..+. ++ .. . ....++++++|.||++|+++|++++..+
T Consensus 213 ~dd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l---- 283 (438)
T PRK03806 213 ADDALTMPIRG-A----DKRCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV---- 283 (438)
T ss_pred CCCHHHHHHhc-C----CceEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc----
Confidence 99887655321 1 11221111 00 00 0 0113568899999999999999999887
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHH
Q 006403 359 GNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 434 (646)
Q Consensus 359 G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~ 434 (646)
|. .++++.++|++|+ ||||||++... +++.+|+| +||||+|++++++.+
T Consensus 284 gi-------------~~~~i~~~L~~f~~~~gR~E~v~~~--------------~~~~~i~Ds~a~n~~a~~~al~~l 334 (438)
T PRK03806 284 GI-------------PRASSLKALTTFTGLPHRFQLVLEH--------------NGVRWINDSKATNVGSTEAALNGL 334 (438)
T ss_pred CC-------------CHHHHHHHHHhCCCCCCeEEEEEee--------------CCEEEEEcCCCCCHHHHHHHHHhC
Confidence 62 3688999999997 99999998754 24778877 799999999998854
No 26
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.1e-32 Score=304.93 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=157.0
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEE--cCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCC
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLF--TSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 215 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~--TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~p 215 (646)
++|+||||||||||++|+.+||+++|++++.+ .++. .++.|
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g-------------------------------------n~G~~ 145 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG-------------------------------------NFGVS 145 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc-------------------------------------cCccc
Confidence 49999999999999999999999999987532 1111 01112
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCccc-cccc-cCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC--C
Q 006403 216 PLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDS-TNVI-KEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK--P 289 (646)
Q Consensus 216 s~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~-TNvi-~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk--~ 289 (646)
.. . .+.|++|+|+|+. +..+. ..+. .+|+++|||||+.||+|+|| |+|+|+.+|++||+ +
T Consensus 146 ~~------------~-~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~ 211 (448)
T TIGR01081 146 AR------------L-GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVP 211 (448)
T ss_pred cc------------c-CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCC
Confidence 10 1 2469999999887 32221 1121 27999999999999999998 99999999999997 3
Q ss_pred -CCcEEEeCCchHHHHHHHHHHHhcCccEEEec-------------c--cccc----chhcccccCcchhhHhhHHHHHH
Q 006403 290 -QIPAFTVPQLSEAMSVLQDRALELMVPLEVAA-------------P--LDIE----KLKRLELSLSGDHQLVNAGLAVS 349 (646)
Q Consensus 290 -g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~-------------~--~~~~----~~~~v~l~L~G~hq~~NAalAia 349 (646)
...+|++.|++.+..++.+.+. .....++ . +... ....+.++++|.||+.|+++|++
T Consensus 212 ~~~~~i~n~dd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a 288 (448)
T TIGR01081 212 GEGLILCPGRDQSLKDTLAKGCW---SEQEFFGEQGEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIA 288 (448)
T ss_pred CCCEEEEeCCCHHHHHHHHhccC---CCeEEECCCCCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHH
Confidence 3467888888876655443221 1111110 0 0000 01135678999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHH
Q 006403 350 LSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESME 428 (646)
Q Consensus 350 ~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~ 428 (646)
++..+ |. .++.+.++|+++. ||||||++... +++.||+|+||||+|++
T Consensus 289 ~~~~l----gi-------------~~~~i~~~L~~~~~~~~R~e~~~~~--------------~g~~ii~D~ahNp~s~~ 337 (448)
T TIGR01081 289 AARHV----GV-------------AIEDACEALGSFVNAKRRLELKGEA--------------NGITVYDDFAHHPTAIE 337 (448)
T ss_pred HHHHc----CC-------------CHHHHHHHHHhCCCCCcceEEEEec--------------CCeEEEEeCCCCHHHHH
Confidence 99887 62 3678999999997 89999998653 24789999999999999
Q ss_pred HHHHHHHhh
Q 006403 429 ACAKWFSSV 437 (646)
Q Consensus 429 a~l~~~~~~ 437 (646)
+++++|++.
T Consensus 338 ~~l~~l~~~ 346 (448)
T TIGR01081 338 ATLQGLRQK 346 (448)
T ss_pred HHHHHHHHh
Confidence 999988754
No 27
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.7e-32 Score=302.68 Aligned_cols=212 Identities=20% Similarity=0.214 Sum_probs=155.7
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||++||.+||+..|.++++.++- |.|+..
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~-------------------------- 149 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLID-------------------------- 149 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHH--------------------------
Confidence 589999999999999999999999999877543321 111100
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCC---cE
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI---PA 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~---~a 293 (646)
. . . ...+.|++|+|+|+.+.-. ..++ +|+++|||||+.||+++|| |+|+|+.+|++||++.. .+
T Consensus 150 --~---~----~-~~~~~~~~v~E~~~~~~~~-~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 150 --A---V----E-EYGEDDIIVAEVSSFQLET-IKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred --H---H----h-cCCCCCEEEEEcChhhhcc-cccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 0 0 0 1125799999998864221 2333 7999999999999999999 99999999999998654 46
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEecc-c---------------cccch-----hcccccCcchhhHhhHHHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAAP-L---------------DIEKL-----KRLELSLSGDHQLVNAGLAVSLSE 352 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~---------------~~~~~-----~~v~l~L~G~hq~~NAalAia~a~ 352 (646)
++|.|++.. ...+.+.+++++.++. . ..... ..+.++++|.||++|+++|++++.
T Consensus 217 vln~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~ 292 (450)
T PRK14106 217 VLNYDDPRT----RSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAY 292 (450)
T ss_pred EEeCCcHHH----HHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHH
Confidence 778887643 3344444555544321 0 00000 013678999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHH
Q 006403 353 CWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEAC 430 (646)
Q Consensus 353 ~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~ 430 (646)
.+ |. .++++.+||+++. ||||||++... ++..+|+| |||||+|++++
T Consensus 293 ~l----gi-------------~~~~i~~~L~~~~~~~gR~e~i~~~--------------~~~~vi~D~~ahNP~s~~~~ 341 (450)
T PRK14106 293 LL----GI-------------SPDVIANTLKTFKGVEHRIEFVAEI--------------NGVKFINDSKGTNPDAAIKA 341 (450)
T ss_pred Hc----CC-------------CHHHHHHHHHhCCCCCcceEEEeeE--------------CCEEEEeCCCccCHHHHHHH
Confidence 87 62 3688999999998 99999998653 24679999 69999999988
Q ss_pred HHHH
Q 006403 431 AKWF 434 (646)
Q Consensus 431 l~~~ 434 (646)
++++
T Consensus 342 l~~l 345 (450)
T PRK14106 342 LEAY 345 (450)
T ss_pred HHhC
Confidence 7743
No 28
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.2e-32 Score=306.30 Aligned_cols=232 Identities=20% Similarity=0.237 Sum_probs=168.2
Q ss_pred ChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHH
Q 006403 117 KLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFY 196 (646)
Q Consensus 117 ~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~ 196 (646)
.++.+.++++.|+ .+..+.++|+||||||||||++|+++||+.+|+++++.++ +....+..
T Consensus 103 ~~e~~~~~~~~l~--~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn----------------i~~~~~~~- 163 (498)
T PRK02006 103 EIELFAQALAALG--ASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGN----------------ISPAALDK- 163 (498)
T ss_pred HHHHHHHHHhhhc--cccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECC----------------CCHHHHHH-
Confidence 4556667777776 3433458999999999999999999999999999876331 22111100
Q ss_pred HHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCC--CcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCC
Q 006403 197 FWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQ--VDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGN 274 (646)
Q Consensus 197 f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~--vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~ 274 (646)
+......+ .|++|+|+++.+ ++.++.+ +|+++|||||+.||+++||
T Consensus 164 -----------------------------~~~~~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaviTNI~~DHld~~g- 211 (498)
T PRK02006 164 -----------------------------LMEAIDAGALPDVWVLELSSFQ-LETTHTL-APDAATVLNITQDHLDWHG- 211 (498)
T ss_pred -----------------------------HHHhhccCCCCcEEEEEccHHH-hCccccc-CCCEEEEcCCChhhhcccC-
Confidence 00111222 489999998864 3556666 7999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEec--------cc-----c-----cc--c-------
Q 006403 275 TLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--------PL-----D-----IE--K------- 327 (646)
Q Consensus 275 TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~--------~~-----~-----~~--~------- 327 (646)
|+|+|+.+|++||+++..+|+|.|++....+..+.+. ..++.++ ++ . .. .
T Consensus 212 s~e~y~~aK~~i~~~~~~~Vln~dd~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (498)
T PRK02006 212 SMAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGA---ADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPA 288 (498)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeCCCHHHHHHhhccCC---ccEEEEeCCCccccccceEEecCCeEEEEecCcccccccc
Confidence 8999999999999988889999999876554432111 1111110 00 0 00 0
Q ss_pred -------------------hh-cccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-
Q 006403 328 -------------------LK-RLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH- 386 (646)
Q Consensus 328 -------------------~~-~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~- 386 (646)
+. .+.++++|.||++|+++|++++..+ |. .++++.++|++|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l----gi-------------~~~~i~~aL~~f~~ 351 (498)
T PRK02006 289 PSRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI----GL-------------PAAPLLHGLREYRG 351 (498)
T ss_pred cccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHhhCCC
Confidence 00 1457899999999999999999887 62 3788999999998
Q ss_pred CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHHH
Q 006403 387 LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKW 433 (646)
Q Consensus 387 ~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~~ 433 (646)
|+||||++... +++.+|.|+ +|||+|+.++++.
T Consensus 352 ~~gR~e~~~~~--------------~g~~~idDs~~tn~~s~~~al~~ 385 (498)
T PRK02006 352 EPHRVELVATI--------------DGVDYYDDSKGTNVGATVAALDG 385 (498)
T ss_pred CCCceEEEEEE--------------CCEEEEEcCCCCCHHHHHHHHHh
Confidence 99999998754 257788885 8999999988773
No 29
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=3.2e-32 Score=299.38 Aligned_cols=210 Identities=23% Similarity=0.264 Sum_probs=159.6
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||++|+.+||+.+|+++.+-++ |. .|
T Consensus 102 ~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gn----------------ig------------------------~~- 140 (433)
T TIGR01087 102 LPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGN----------------IG------------------------TP- 140 (433)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECc----------------cC------------------------HH-
Confidence 37999999999999999999999999988644321 11 11
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCC---CcE
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ---IPA 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g---~~a 293 (646)
.+.+ ....+.|++|+|+|.. .+|.++.+ +|+++|||||+.||+|+|| |+|+|+.+|++|++.. ..+
T Consensus 141 ---~~~~-----~~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~~ 209 (433)
T TIGR01087 141 ---ALEV-----LDQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDVA 209 (433)
T ss_pred ---HHHH-----HhccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 0111 1114689999999864 56777776 7999999999999999999 9999999999999853 478
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEecc---cc--c--c--c--h--hcccccCcchhhHhhHHHHHHHHHHHHHhcCC
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAAP---LD--I--E--K--L--KRLELSLSGDHQLVNAGLAVSLSECWLRRTGN 360 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~~---~~--~--~--~--~--~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~ 360 (646)
|++.|++... ..+...+++++.++. .+ . . . + ..+.++++|.||++|+++|++++..+ |.
T Consensus 210 i~n~dd~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----gi 281 (433)
T TIGR01087 210 VLNADDPRFA----RLAQKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKSL----GL 281 (433)
T ss_pred EEECCCHHHH----HhhhhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHHc----CC
Confidence 8998876533 333333445544431 00 0 0 0 1 13678999999999999999999887 62
Q ss_pred CcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHHH
Q 006403 361 WEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKW 433 (646)
Q Consensus 361 ~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~~ 433 (646)
.++.+.++|++|. ||||||++... +++.||+|+ ||||+|+.++++.
T Consensus 282 -------------~~~~i~~~L~~f~g~~~R~e~v~~~--------------~g~~~idD~~atn~~a~~~al~~ 329 (433)
T TIGR01087 282 -------------NLEAILEALRSFKGLPHRLEYVGQK--------------NGVHFYNDSKATNVHATLAALSA 329 (433)
T ss_pred -------------CHHHHHHHHHhCCCCCCceEEEEEE--------------CCEEEEEcCCCCCHHHHHHHHHh
Confidence 3788999999998 99999999754 257899996 9999999998874
No 30
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.7e-33 Score=309.50 Aligned_cols=245 Identities=20% Similarity=0.219 Sum_probs=179.3
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+.+||+.+|.++.+.++- |.|+
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~----------------------------- 156 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPV----------------------------- 156 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHH-----------------------------
Confidence 69999999999999999999999999877655431 2221
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeC
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 297 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~ 297 (646)
+.. ...+.|++|+|+|+.. ++.+..+ +|+++|||||++||+|+|| |+|+|+.+|++||+. .++|+|.
T Consensus 157 ---~~~------~~~~~~~~VlE~ss~q-l~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 157 ---LDV------LDEPAELLAVELSSFQ-LHWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred ---HHh------ccCCCCEEEEECChHH-hCccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 000 1357899999999874 3444334 7999999999999999999 999999999999984 7889999
Q ss_pred CchHHHHHHHHHHHhcCccEEEec-----cc--------c----cc--chhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 006403 298 QLSEAMSVLQDRALELMVPLEVAA-----PL--------D----IE--KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358 (646)
Q Consensus 298 q~~~~~~vl~~~a~~~~~~l~~~~-----~~--------~----~~--~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~ 358 (646)
|++.+..+. +.+.......+... .+ . .. ....+.++++|.||++|+++|++++..+
T Consensus 224 dd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l---- 298 (488)
T PRK03369 224 DDSRAAALL-DTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV---- 298 (488)
T ss_pred CCHHHHHHH-HhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc----
Confidence 988765433 22211100000000 00 0 00 0112567899999999999999999887
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhcCCC-CCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHh
Q 006403 359 GNWEKVSHNDGQGADLPDAFVRGLSTAHL-LGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSS 436 (646)
Q Consensus 359 G~~~~~~~~~~~~~~l~e~i~~gL~~~~~-pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~ 436 (646)
|. .++++.++|++|++ |||||++... +++.||.| |||||+|++++++.|
T Consensus 299 Gi-------------~~e~i~~~L~~f~~~~gR~E~v~~~--------------~gv~iIDDS~AhNp~s~~aal~~~-- 349 (488)
T PRK03369 299 GV-------------PAGAIADALASFRVGRHRAEVVAVA--------------DGITYVDDSKATNPHAARASILAY-- 349 (488)
T ss_pred CC-------------CHHHHHHHHHhCCCCCCccEEEEcC--------------CCEEEEECCCCCCHHHHHHHHHhC--
Confidence 62 36889999999995 9999999754 24666666 799999999988622
Q ss_pred hhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEE-ecCCCCChhhhHHHHHHHhhhcCCCcc
Q 006403 437 VVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLF-NCMEARHPQVLLPRLVSTCASSGTHFS 515 (646)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF-g~~~dRd~~~ll~~L~~~~~~~~~~fd 515 (646)
.+.++|| |...++|...|++.+.+ ..+
T Consensus 350 ---------------------------------------------~~iilI~GG~~k~~d~~~l~~~l~~-------~~~ 377 (488)
T PRK03369 350 ---------------------------------------------PRVVWIAGGLLKGASVDALVAEMAS-------RLV 377 (488)
T ss_pred ---------------------------------------------CCeEEEecCcCCCCCHHHHHHHHhh-------hee
Confidence 1479999 77888898898887754 245
Q ss_pred EEEEeCC
Q 006403 516 KALFVPS 522 (646)
Q Consensus 516 ~~if~~~ 522 (646)
++++.++
T Consensus 378 ~vi~iG~ 384 (488)
T PRK03369 378 GAVLIGR 384 (488)
T ss_pred EEEEEcC
Confidence 6666543
No 31
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=2.1e-32 Score=322.77 Aligned_cols=256 Identities=15% Similarity=0.146 Sum_probs=177.2
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+.+||+++|++...+. .+ .+|.++..
T Consensus 105 ~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG---------~~g~~~~~--------------------------- 147 (809)
T PRK14573 105 ISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GG---------LNQEGLNG--------------------------- 147 (809)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CC---------cccccccc---------------------------
Confidence 699999999999999999999999998643322 11 01221110
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEE
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAF 294 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av 294 (646)
...+.|++|+|+|+.. ..+. ..+|+++|||||+.||+|+++.|+|+|+.+|..+++ ++..+|
T Consensus 148 ------------~~~~~d~~V~E~ss~~--~~~~-~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~V 212 (809)
T PRK14573 148 ------------YSGSSEYFVAEADESD--GSLK-HYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKCF 212 (809)
T ss_pred ------------ccCCCCEEEEECCCCc--chhh-eeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 0124699999998762 1222 238999999999999999884499999999988865 345688
Q ss_pred EeCCchHHHHHHHHHHHhc----CccEEE--e--cc----ccc---c-chhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 006403 295 TVPQLSEAMSVLQDRALEL----MVPLEV--A--AP----LDI---E-KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358 (646)
Q Consensus 295 ~~~q~~~~~~vl~~~a~~~----~~~l~~--~--~~----~~~---~-~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~ 358 (646)
+|.||+....... .... .+.+.. + .. +.. . ....+.++++|.||++|+++|++++..+
T Consensus 213 ~N~Dd~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l---- 286 (809)
T PRK14573 213 YNGDCPRLKGCLQ--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTL---- 286 (809)
T ss_pred EeCCCHHHHhhcc--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHc----
Confidence 9999875432110 0000 111111 0 10 110 0 1134677899999999999999999876
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhh
Q 006403 359 GNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSV 437 (646)
Q Consensus 359 G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~ 437 (646)
|. .++.+.+||+++. ||||||++... +++.||+||||||+|++++++.++..
T Consensus 287 gi-------------~~~~i~~~L~~f~~~~~R~e~~~~~--------------~~~~~i~D~ahnP~~~~a~l~~l~~~ 339 (809)
T PRK14573 287 GI-------------DEGAIRNALKGFSGVQRRLERKNSS--------------ETFLFLEDYAHHPSEISCTLRAVRDA 339 (809)
T ss_pred CC-------------CHHHHHHHHHhCCCCCCCCEEEecc--------------CCcEEEEECCCCHHHHHHHHHHHHhh
Confidence 62 3688999999998 99999998754 24789999999999999999988654
Q ss_pred hccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEE
Q 006403 438 VKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKA 517 (646)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~ 517 (646)
. +..|+++||+...++.....+..+...+. .+|.+
T Consensus 340 ~-----------------------------------------~~~rli~vf~~~~~~~~~~~~~~~~~~l~----~~d~v 374 (809)
T PRK14573 340 V-----------------------------------------GLRRIIAICQPHRFSRLRECLDSFPSAFQ----DADEV 374 (809)
T ss_pred c-----------------------------------------CCCEEEEEEcCCcchhHHHHHHHHHHHHH----HCCEE
Confidence 1 23478999965444444455555544443 36888
Q ss_pred EEeCCC
Q 006403 518 LFVPSV 523 (646)
Q Consensus 518 if~~~~ 523 (646)
++++..
T Consensus 375 ilt~~~ 380 (809)
T PRK14573 375 ILTDVY 380 (809)
T ss_pred EECCcc
Confidence 887644
No 32
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-31 Score=295.12 Aligned_cols=210 Identities=21% Similarity=0.213 Sum_probs=155.6
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||++|+.+||+.+|.++.+.++- |.|++.
T Consensus 108 ~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~-------------------------- 149 (447)
T PRK02472 108 APIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASE-------------------------- 149 (447)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHH--------------------------
Confidence 379999999999999999999999999877443321 222110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCc---E
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIP---A 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~---a 293 (646)
+ . -...+.|++|+|+++.+.. .++.+ +|+++|||||+.||+++|| |+|+|+.+|++|+++..+ +
T Consensus 150 ---~------~-~~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~~ 216 (447)
T PRK02472 150 ---V------A-QKATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDYL 216 (447)
T ss_pred ---H------H-hcCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 0 0 0123569999999877643 35555 7999999999999999999 999999999999987544 8
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEecc--------------cccc--c-hhcccccCcchhhHhhHHHHHHHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAAP--------------LDIE--K-LKRLELSLSGDHQLVNAGLAVSLSECWLR 356 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~~--------------~~~~--~-~~~v~l~L~G~hq~~NAalAia~a~~ll~ 356 (646)
|++.|++...+.. .+.+++++.++. +... . ...+.++++|.||++|+++|++++..+
T Consensus 217 v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l-- 290 (447)
T PRK02472 217 VINFDQEEVKELA----KQTKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL-- 290 (447)
T ss_pred EEeCCcHHHHHHH----hhcCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc--
Confidence 8998887654332 222223322210 0000 0 012367899999999999999999987
Q ss_pred hcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHH
Q 006403 357 RTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAK 432 (646)
Q Consensus 357 ~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~ 432 (646)
|. .++++.++|+++. |+||||++... +++.||+|+ ||||+|+..+++
T Consensus 291 --gi-------------~~~~i~~~L~~f~~~~~R~e~~~~~--------------~g~~vi~D~~a~N~~s~~~al~ 339 (447)
T PRK02472 291 --GV-------------SNEAIREVLSTFSGVKHRLQYVGTI--------------DGRKFYNDSKATNILATQKALS 339 (447)
T ss_pred --CC-------------CHHHHHHHHHhCCCCCCcceEEEEE--------------CCeEEEECCCCCCHHHHHHHHH
Confidence 62 3688999999998 99999998653 247899996 999999888766
No 33
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=6e-31 Score=291.05 Aligned_cols=216 Identities=20% Similarity=0.237 Sum_probs=154.1
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+++||+.+|++...+ +.|. +.. |.
T Consensus 100 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~-------------~gg~-~~~------------------------~~- 140 (448)
T TIGR01082 100 HSIAVAGTHGKTTTTAMIAVILKEAGLDPTVV-------------VGGL-VKE------------------------AG- 140 (448)
T ss_pred cEEEEECCCChHHHHHHHHHHHHHcCCCCeEE-------------ECcc-ccc------------------------CC-
Confidence 79999999999999999999999999743222 1121 110 00
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhh-hcCCCHHHHHHHHhcccCC---CCcE
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHME-LLGNTLNDIAFHKAGIFKP---QIPA 293 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld-~LG~TleeIA~~KagIfk~---g~~a 293 (646)
.. . .....|++|+|+++... .....+|+++|||||+.||+| +++ |+|+|+.+|.+|++. +..+
T Consensus 141 ~~---~------~~~~~~~~V~E~s~~q~---~~~~~~p~vaVitNI~~DHld~~~~-s~e~y~~aK~~i~~~~~~~~~~ 207 (448)
T TIGR01082 141 TN---A------RLGSGEYLVAEADESDA---SFLHLQPNVAIVTNIEPDHLDTYGS-SFERLKAAFEKFIHNLPFYGLA 207 (448)
T ss_pred cc---c------ccCCCCEEEEECCCccc---hHhhccCCEEEEecCChhhcchhcC-CHHHHHHHHHHHHHhCCCCCEE
Confidence 00 0 01235999999986522 212237999999999999999 555 999999999999974 6678
Q ss_pred EEeCCchHHHHHHHHHHHhc----C-----ccEEE--e--cc----cccc----chhcccccCcchhhHhhHHHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALEL----M-----VPLEV--A--AP----LDIE----KLKRLELSLSGDHQLVNAGLAVSLSE 352 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~----~-----~~l~~--~--~~----~~~~----~~~~v~l~L~G~hq~~NAalAia~a~ 352 (646)
|+|.|++....+.. .+... + ..+.. + .. |... ....+.++++|.||++|+++|++++.
T Consensus 208 V~n~dd~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~a~~~ 286 (448)
T TIGR01082 208 VICADDPVLRELVP-KATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVAL 286 (448)
T ss_pred EEECCCHHHHHHHh-hcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHHHHHH
Confidence 99999887654432 21110 0 01110 0 00 0000 01235678999999999999999998
Q ss_pred HHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHH
Q 006403 353 CWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACA 431 (646)
Q Consensus 353 ~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l 431 (646)
.+ |. .++.+.++|++|+ ++||||++... +++.||+||||||+++++++
T Consensus 287 ~l----gi-------------~~~~i~~~l~~f~~~~~R~e~~~~~--------------~gv~~i~D~ahn~~~~~a~~ 335 (448)
T TIGR01082 287 EL----GI-------------DFEAILRALANFQGVKRRFEILGEF--------------GGVLLIDDYAHHPTEIKATL 335 (448)
T ss_pred Hc----CC-------------CHHHHHHHHHhCCCCCccceEEEEe--------------CCeEEEEcCCCCHHHHHHHH
Confidence 87 62 3688999999998 68999999654 25889999999999999999
Q ss_pred HHHHhh
Q 006403 432 KWFSSV 437 (646)
Q Consensus 432 ~~~~~~ 437 (646)
++++..
T Consensus 336 ~al~~~ 341 (448)
T TIGR01082 336 KAARQG 341 (448)
T ss_pred HHHHHh
Confidence 988765
No 34
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.9e-31 Score=293.28 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=156.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||++|+.+||+.+|+++.+-+.. |.|.
T Consensus 104 ~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~---------------------------- 143 (454)
T PRK01368 104 LKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GVPA---------------------------- 143 (454)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CHHH----------------------------
Confidence 479999999999999999999999999886543221 1110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCC---CCcE
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKP---QIPA 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~---g~~a 293 (646)
+. ...+.|++|+|+|+... +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..||+. +..+
T Consensus 144 ----l~-------~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~~~~ 209 (454)
T PRK01368 144 ----LQ-------AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMDKDSYA 209 (454)
T ss_pred ----hc-------ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 00 12346999999999753 334433 7999999999999999999 999999999999963 4568
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEec--c-----c---------cc--c--chhcccccCcchhhHhhHHHHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAA--P-----L---------DI--E--KLKRLELSLSGDHQLVNAGLAVSLSEC 353 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~--~-----~---------~~--~--~~~~v~l~L~G~hq~~NAalAia~a~~ 353 (646)
|+|.|++....+..+.....+.+++.++ . + .. . ....+.++++|.||++|+++|++++..
T Consensus 210 Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~~ 289 (454)
T PRK01368 210 VINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKI 289 (454)
T ss_pred EEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHHH
Confidence 9999988765543321111111222111 0 0 00 0 012345678999999999999999987
Q ss_pred HHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHH
Q 006403 354 WLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACA 431 (646)
Q Consensus 354 ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l 431 (646)
+ | ..++.+.++|++|. ||||||++... +++.||+| +||||+|+.+++
T Consensus 290 l----g-------------i~~~~i~~~L~~F~~~~~Rle~v~~~--------------~gv~~i~DS~atN~~a~~~al 338 (454)
T PRK01368 290 I----G-------------VEPKKILESISSFQSLPHRMQYIGSI--------------NNISFYNDSKATNAISAVQSI 338 (454)
T ss_pred c----C-------------CCHHHHHHHHHhCCCCCcceEEEEEE--------------CCeEEEECCCCCCHHHHHHHH
Confidence 7 6 23688999999987 99999999764 25789999 899999999988
Q ss_pred HHH
Q 006403 432 KWF 434 (646)
Q Consensus 432 ~~~ 434 (646)
+.|
T Consensus 339 ~~~ 341 (454)
T PRK01368 339 KAL 341 (454)
T ss_pred Hhc
Confidence 743
No 35
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.98 E-value=3.1e-31 Score=295.17 Aligned_cols=238 Identities=18% Similarity=0.113 Sum_probs=172.0
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+.+||+.+|.++.+.++- |.|+.
T Consensus 116 ~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~---------------------------- 155 (468)
T PRK04690 116 GTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLL---------------------------- 155 (468)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchH----------------------------
Confidence 79999999999999999999999999877554431 22221
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCC--CcEEE
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ--IPAFT 295 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g--~~av~ 295 (646)
+.+. ...+.|++|+|+|+...-+......+|+++|||||+.||+++|| ++++|+.+|++||+.. ..+|+
T Consensus 156 -~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~~~v~ 226 (468)
T PRK04690 156 -EVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRPRIALL 226 (468)
T ss_pred -HHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCCCeEEE
Confidence 1000 12356999999999743332211137999999999999999999 9999999999999864 35678
Q ss_pred eCCchHHHHHHHHHHHhcCccEEEecc---------cccc----chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCc
Q 006403 296 VPQLSEAMSVLQDRALELMVPLEVAAP---------LDIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWE 362 (646)
Q Consensus 296 ~~q~~~~~~vl~~~a~~~~~~l~~~~~---------~~~~----~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~ 362 (646)
|.|++..... . ....+++.++. +... .+....+++.|.||+.|+++|++++..+ |
T Consensus 227 n~dd~~~~~~-~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l----g--- 294 (468)
T PRK04690 227 NAADPRLAAL-Q----LPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL----G--- 294 (468)
T ss_pred eCccHHHHHH-h----cCCCeEEEeeCCccceecceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc----C---
Confidence 8888764322 1 12223333210 0000 1123567899999999999999999877 5
Q ss_pred ccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhcc
Q 006403 363 KVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKG 440 (646)
Q Consensus 363 ~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~ 440 (646)
..++.+.++|+++. ||||||++... +++.||+| +||||++++++++.|
T Consensus 295 ----------i~~~~i~~~l~~~~~~~gR~e~~~~~--------------~g~~iidDs~ahNp~a~~~al~~~------ 344 (468)
T PRK04690 295 ----------LDAVALAPAAAGFRPLPNRLQELGSR--------------DGITYVNDSISTTPHASLAALDCF------ 344 (468)
T ss_pred ----------CCHHHHHHHHHhCCCCCCCcEEEEcc--------------CCeEEEEeCCCCCHHHHHHHHHhc------
Confidence 23688999999996 99999999764 24677777 599999999877632
Q ss_pred CCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEec-CCCCChhhhHHHHHH
Q 006403 441 SGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNC-MEARHPQVLLPRLVS 505 (646)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~-~~dRd~~~ll~~L~~ 505 (646)
+..+.++|||. ..++|...+++.|.+
T Consensus 345 ---------------------------------------~~~~i~~i~Gg~~k~kd~~~l~~~l~~ 371 (468)
T PRK04690 345 ---------------------------------------AGRRVALLVGGHDRGLDWTDFAAHMAQ 371 (468)
T ss_pred ---------------------------------------cCCcEEEEEcCCCCCCCHHHHHHHHHh
Confidence 12368999996 467788888887753
No 36
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=1.2e-30 Score=290.72 Aligned_cols=243 Identities=20% Similarity=0.262 Sum_probs=177.5
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+++||+..|+++++.++. |.|++.
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~--------------------------- 162 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSA--------------------------- 162 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHH---------------------------
Confidence 69999999999999999999999999988654431 222210
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeC
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 297 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~ 297 (646)
.+ -...++|++|+|+|+.+. +-+..+ +|+++|||||+.||+|+|| |+|+|+.+|+.||+. ..+|+|.
T Consensus 163 -----~l----~~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 163 -----AL----VAQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred -----HH----hcCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 00 023468999999999875 334444 7999999999999999999 999999999999975 4688999
Q ss_pred CchHHHHHHHHHHHhcCccEEEec--c-------cc---c-----c---ch-hcccccCcchhhHhhHHHHHHHHHHHHH
Q 006403 298 QLSEAMSVLQDRALELMVPLEVAA--P-------LD---I-----E---KL-KRLELSLSGDHQLVNAGLAVSLSECWLR 356 (646)
Q Consensus 298 q~~~~~~vl~~~a~~~~~~l~~~~--~-------~~---~-----~---~~-~~v~l~L~G~hq~~NAalAia~a~~ll~ 356 (646)
||+.......+ .. ...++.++ . +. . . .+ ..+.++++|.||++|+++|++++..+
T Consensus 230 Dd~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l-- 304 (473)
T PRK00141 230 DDEYVVQLTSA-AD--LSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ-- 304 (473)
T ss_pred CCHHHHHHHhh-cC--CCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc--
Confidence 98876543321 10 11121111 0 00 0 0 00 12457899999999999999999887
Q ss_pred hcCCCcccccCCCCCCCcHHHHHHHHhcCCCCC-cEEEEeccCCCCCCCCccccCCCceEEEEeC--CCCHHHHHHHHHH
Q 006403 357 RTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLG-RAQIVYDISLVPNSSGLFENSSGELIFYLDG--AHTAESMEACAKW 433 (646)
Q Consensus 357 ~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pG-R~E~v~~~~~~~~~~~~~~~~~~~~~vilDg--AHNp~sl~a~l~~ 433 (646)
|. .++.+.+||++++|+| |||++...+ +. +++|+ ||||+|++++++.
T Consensus 305 --gi-------------~~~~i~~~l~~~~~~~~R~e~~~~~~--------------~~-~iiDdsyahNp~s~~~~l~~ 354 (473)
T PRK00141 305 --GV-------------APEAIARALSSFEVAGHRGQVVAEHG--------------GV-TWIDNSKATNPHAADAALAG 354 (473)
T ss_pred --CC-------------CHHHHHHHHhhCCCCCCceEEEEEeC--------------CE-EEEEcCCCCCHHHHHHHHHh
Confidence 62 3688999999999776 999987531 34 55555 9999999999874
Q ss_pred HHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEE-ecCCCCChhhhHHHHHHHhhhcCC
Q 006403 434 FSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLF-NCMEARHPQVLLPRLVSTCASSGT 512 (646)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF-g~~~dRd~~~ll~~L~~~~~~~~~ 512 (646)
+ .+.++|| |.+.++|...+++.+...
T Consensus 355 l-----------------------------------------------~~~~~i~gG~~kdkd~~~~~~~l~~~------ 381 (473)
T PRK00141 355 H-----------------------------------------------ESVVWVAGGQLKGADIDDLIRTHAPR------ 381 (473)
T ss_pred c-----------------------------------------------CCEEEEecCccCCCChHHHHHHHHhh------
Confidence 3 1368899 777999999999888652
Q ss_pred CccEEEEeC
Q 006403 513 HFSKALFVP 521 (646)
Q Consensus 513 ~fd~~if~~ 521 (646)
.+++++++
T Consensus 382 -~~~~~~~~ 389 (473)
T PRK00141 382 -IKAAVVLG 389 (473)
T ss_pred -ccEEEEEC
Confidence 45666654
No 37
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=2.2e-30 Score=283.51 Aligned_cols=251 Identities=22% Similarity=0.281 Sum_probs=187.4
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCC
Q 006403 136 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 215 (646)
Q Consensus 136 ~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~p 215 (646)
..|+|+||||||||||++|+.+||++.|+++.+-+.- |.|.
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------------G~p~--------------------------- 149 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------------GTPA--------------------------- 149 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc------------CccH---------------------------
Confidence 3479999999999999999999999999988653321 1111
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCC-cEE
Q 006403 216 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI-PAF 294 (646)
Q Consensus 216 s~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~-~av 294 (646)
.+++. .....|+.|+|+++-. ++.+.-+ +|.+++||||+.||+|||| ++|+|+..|..|++... .+|
T Consensus 150 --l~~~~-------~~~~~d~~VlElSSfQ-L~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~V 217 (448)
T COG0771 150 --LELLE-------QAEPADVYVLELSSFQ-LETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAV 217 (448)
T ss_pred --HHhhc-------ccCCCCEEEEEccccc-cccCccC-CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEE
Confidence 11111 1347899999998874 4444433 7999999999999999999 99999999999999777 789
Q ss_pred EeCCchHHHHHHHHHHHhcCccEEEec---cc-----ccc---------chhcccccCcchhhHhhHHHHHHHHHHHHHh
Q 006403 295 TVPQLSEAMSVLQDRALELMVPLEVAA---PL-----DIE---------KLKRLELSLSGDHQLVNAGLAVSLSECWLRR 357 (646)
Q Consensus 295 ~~~q~~~~~~vl~~~a~~~~~~l~~~~---~~-----~~~---------~~~~v~l~L~G~hq~~NAalAia~a~~ll~~ 357 (646)
+|.||+.......+. ....+..+. .. ... ....-.++++|.||++|+++|+++|+..
T Consensus 218 in~dd~~~~~~~~~~---~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~--- 291 (448)
T COG0771 218 INADDAYLKTLADEA---TKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL--- 291 (448)
T ss_pred EeCCcHHHhhhhhhc---ccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc---
Confidence 999998754433322 122222221 10 000 0123468899999999999999999988
Q ss_pred cCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHHHHH
Q 006403 358 TGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKWFS 435 (646)
Q Consensus 358 ~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~~~~ 435 (646)
|. .++.+.++|++|+ +|+|||.+... +|+.||.|. |.|+++..++++.|.
T Consensus 292 -gv-------------~~e~i~~~L~~F~gl~HR~e~v~~~--------------~gv~f~NDSKATN~~At~~AL~~~~ 343 (448)
T COG0771 292 -GV-------------PPEAILEALSSFTGLPHRLEFVGEK--------------DGVLFINDSKATNVDATLAALSGFD 343 (448)
T ss_pred -CC-------------CHHHHHHHHHhCCCCCcceEEEEec--------------CCEEEecCCCCCCHHHHHHHHHcCC
Confidence 62 3789999999999 99999999987 479999998 999999999999887
Q ss_pred hhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecC
Q 006403 436 SVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCM 491 (646)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~ 491 (646)
..+ .++ .||.+++.+|+.|.. ...+..+.+++||..
T Consensus 344 ~~v-------~lI-~GG~~Kg~df~~L~~------------~~~~~~~~~~~~G~~ 379 (448)
T COG0771 344 GPV-------ILI-AGGDDKGADFSPLAE------------ILAKVIKKLVLIGED 379 (448)
T ss_pred CCE-------EEE-ECCCCCCCChhHHHH------------HhhhcceEEEEeCCC
Confidence 221 233 689999999999831 223334568888853
No 38
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.9e-28 Score=266.42 Aligned_cols=254 Identities=20% Similarity=0.242 Sum_probs=196.0
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
...|+||||+|||||++||++||.++|+..++. |.|.+=.- -.+
T Consensus 107 ~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~-------------iGG~~~~~-----------------g~n------ 150 (459)
T COG0773 107 RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-------------IGGILKNF-----------------GTN------ 150 (459)
T ss_pred CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEE-------------ECcccccC-----------------Ccc------
Confidence 479999999999999999999999999876532 33422100 000
Q ss_pred HHHHHHHHHHHHhhhC-CCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCc
Q 006403 217 LFQFLTVLAFKIFVCE-QVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIP 292 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~-~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~ 292 (646)
... .-++.|.|+ .++|+.-+-.+|.++|||||..||+|++| ++++|..+....++ ..+.
T Consensus 151 -------------a~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp~~G~ 213 (459)
T COG0773 151 -------------ARLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVPFYGR 213 (459)
T ss_pred -------------cccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCCccce
Confidence 111 338999999 99999988889999999999999999999 99999887666654 4556
Q ss_pred EEEeCCchHHHHHHHHHHHhcCccEEEecc-------------------ccc----cchhcccccCcchhhHhhHHHHHH
Q 006403 293 AFTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDI----EKLKRLELSLSGDHQLVNAGLAVS 349 (646)
Q Consensus 293 av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~----~~~~~v~l~L~G~hq~~NAalAia 349 (646)
+|++.|||...+++... ...+++.++. |+. .....+.++++|.||+.||++||+
T Consensus 214 ~v~~~dd~~l~~l~~~~---~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia 290 (459)
T COG0773 214 AVVCGDDPNLRELLSRG---CWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIA 290 (459)
T ss_pred EEEECCCHHHHHHHhcc---cCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHH
Confidence 89999999877766532 2222222210 111 124568899999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHH
Q 006403 350 LSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESME 428 (646)
Q Consensus 350 ~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~ 428 (646)
+|..+ |. .+++|+++|++|+ +..|||++... +++++|.||||+|..++
T Consensus 291 ~a~~~----Gi-------------~~~~i~~aL~~F~GvkRRfe~~g~~--------------~~~~viDDYaHHPtEI~ 339 (459)
T COG0773 291 VAREL----GI-------------DPEAIAEALASFQGVKRRFELKGEV--------------NGVTVIDDYAHHPTEIK 339 (459)
T ss_pred HHHHc----CC-------------CHHHHHHHHHhCCCcceeeEEeeeE--------------CCEEEEecCCCCHHHHH
Confidence 99988 72 4789999999999 99999988776 36899999999999999
Q ss_pred HHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhh
Q 006403 429 ACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCA 508 (646)
Q Consensus 429 a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~ 508 (646)
++++.++.... ...|.|+||-.........+++.+++.+.
T Consensus 340 aTL~aaR~~~~----------------------------------------~~~rIvaifQPHrySRt~~~~~dF~~~l~ 379 (459)
T COG0773 340 ATLAAARQKVP----------------------------------------GGKRIVAVFQPHRYSRTRDLLDDFAKALS 379 (459)
T ss_pred HHHHHHHHhcC----------------------------------------CCceEEEEECCCchHhHHHHHHHHHHHHh
Confidence 99998887631 13588999998877677788888888774
Q ss_pred hcCCCccEEEEeC
Q 006403 509 SSGTHFSKALFVP 521 (646)
Q Consensus 509 ~~~~~fd~~if~~ 521 (646)
..|.++.++
T Consensus 380 ----~AD~v~l~~ 388 (459)
T COG0773 380 ----DADEVILLD 388 (459)
T ss_pred ----cCCEEEEec
Confidence 367777765
No 39
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=3.2e-29 Score=276.68 Aligned_cols=208 Identities=19% Similarity=0.210 Sum_probs=155.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||+.|+++||+.+|.++++-++- |. |.
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G~----------------------------~~ 147 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------GV----------------------------PA 147 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------CH----------------------------HH
Confidence 379999999999999999999999999887643321 11 10
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEe
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 296 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~ 296 (646)
..+...+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..||+....+|+|
T Consensus 148 ----------~~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n 214 (438)
T PRK04663 148 ----------LDLLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVN 214 (438)
T ss_pred ----------HhhhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEe
Confidence 00123467999999999863 334444 7999999999999999999 9999999999999876678999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEec----cc----------ccc----chhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 006403 297 PQLSEAMSVLQDRALELMVPLEVAA----PL----------DIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358 (646)
Q Consensus 297 ~q~~~~~~vl~~~a~~~~~~l~~~~----~~----------~~~----~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~ 358 (646)
.||+....... ..+++.++ ++ ... ....+.++++|.||++|+++|++++..+
T Consensus 215 ~dd~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l---- 284 (438)
T PRK04663 215 RDDKQTYPDHA------ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA---- 284 (438)
T ss_pred CCCHHHHhhhc------CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc----
Confidence 99876422211 11221111 00 000 0123678899999999999999999987
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHH
Q 006403 359 GNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 434 (646)
Q Consensus 359 G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~ 434 (646)
|. .++++.++|++|+ ++||||++... +++.+|.| +++||+|+.++++.+
T Consensus 285 Gi-------------~~~~i~~~L~~f~g~~~R~e~v~~~--------------~g~~~idDs~~tn~~s~~~Al~~~ 335 (438)
T PRK04663 285 GV-------------DYRKALDALKSYTGLTHRCQVVADN--------------HGIKWVNDSKATNVASTLAALSGL 335 (438)
T ss_pred CC-------------CHHHHHHHHHhCCCCCCceEEeeee--------------CCcEEEeCCCcCCHHHHHHHHHhc
Confidence 62 3688999999998 99999998654 25677777 489999999988844
No 40
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=1.3e-28 Score=273.28 Aligned_cols=247 Identities=19% Similarity=0.200 Sum_probs=174.8
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||+.|+.+||+..|+++.+-++ | |.|+
T Consensus 117 ~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn---------i---G~p~---------------------------- 156 (458)
T PRK01710 117 AKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN---------I---GTPL---------------------------- 156 (458)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc---------c---ChhH----------------------------
Confidence 47999999999999999999999999987632111 0 2111
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcE
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPA 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~a 293 (646)
+. .+ . ...+.|++|+|+|+....+. .+ +|+++|||||+.||+++|| |+|+|+.+|..||+ ++..+
T Consensus 157 -~~---~~--~--~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~~ 224 (458)
T PRK01710 157 -FS---NI--E--EIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDLL 224 (458)
T ss_pred -HH---HH--h--hCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 11 00 0 11257999999999743322 23 7999999999999999999 99999999999986 45678
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEec--c------------cccc--c-hhcccccCcchhhHhhHHHHHHHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAA--P------------LDIE--K-LKRLELSLSGDHQLVNAGLAVSLSECWLR 356 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~--~------------~~~~--~-~~~v~l~L~G~hq~~NAalAia~a~~ll~ 356 (646)
|+|.|++....+.. . ....++.++ . +... . ...+.++++|.||++|+++|++++...
T Consensus 225 v~n~Dd~~~~~~~~-~---~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~-- 298 (458)
T PRK01710 225 VLNKDNEITNGMEK-E---AKGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDD-- 298 (458)
T ss_pred EEeCCcHHHHHHHh-h---cCCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhC--
Confidence 99999886544321 1 112222221 0 0000 0 113678899999999999999998542
Q ss_pred hcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHH
Q 006403 357 RTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 434 (646)
Q Consensus 357 ~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~ 434 (646)
..++.+.++|++++ ++||||.+... +|..+|.| |+|||+|+.++++.+
T Consensus 299 ----------------i~~~~i~~~L~~f~~~~~R~e~~~~~--------------~g~~~i~Dsy~~np~s~~~al~~~ 348 (458)
T PRK01710 299 ----------------VSIESMKKVATTFSGVEHRCEFVREI--------------NGVKYYNDSIASSPTRTLAGLKAF 348 (458)
T ss_pred ----------------CCHHHHHHHHHhCCCCCcceEEEEEE--------------CCEEEecccccCCHHHHHHHHHhC
Confidence 13688999999998 99999998753 25788888 899999999988732
Q ss_pred HhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCc
Q 006403 435 SSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHF 514 (646)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~f 514 (646)
+ .++|+|+|- .|.......|.+.+.. .+
T Consensus 349 ---------------------------------------------~-~~~i~IlGg---~~~~~~~~~l~~~~~~---~~ 376 (458)
T PRK01710 349 ---------------------------------------------E-KPVILIAGG---YDKKIPFEPLAEEGYE---KI 376 (458)
T ss_pred ---------------------------------------------C-CCEEEEeCC---cCCCCCHHHHHHHHHh---hc
Confidence 1 147888883 3445556666655431 37
Q ss_pred cEEEEeCCC
Q 006403 515 SKALFVPSV 523 (646)
Q Consensus 515 d~~if~~~~ 523 (646)
+.++++...
T Consensus 377 ~~vi~~G~~ 385 (458)
T PRK01710 377 KTLILMGAT 385 (458)
T ss_pred cEEEEECCC
Confidence 888888654
No 41
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=9.8e-28 Score=263.35 Aligned_cols=204 Identities=17% Similarity=0.109 Sum_probs=141.6
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||+.|+.+||+..|..+.+.++.+ .|.
T Consensus 102 ~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG----------------------------------------~p~ 141 (418)
T PRK00683 102 YPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIG----------------------------------------IPI 141 (418)
T ss_pred CCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcC----------------------------------------HHH
Confidence 3689999999999999999999999998776655421 120
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEe
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 296 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~ 296 (646)
++ . . .+.|++|+|+|+.+.-+.-.....|+++|||||+.||+|+|| |+|+|+.+|+.||.. +.+
T Consensus 142 -l~---~------~-~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~----~~~ 205 (418)
T PRK00683 142 -LD---G------M-QQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC----LRN 205 (418)
T ss_pred -HH---H------h-hcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh----hhC
Confidence 11 1 1 246999999999854333333334589999999999999999 999999999999852 112
Q ss_pred CCchHHHHHHHHHHHhcCccEEEe-ccccccchhcccccCcchhhHhhHHHHHHHHHH-HHHhcCCCcccccCCCCCCCc
Q 006403 297 PQLSEAMSVLQDRALELMVPLEVA-APLDIEKLKRLELSLSGDHQLVNAGLAVSLSEC-WLRRTGNWEKVSHNDGQGADL 374 (646)
Q Consensus 297 ~q~~~~~~vl~~~a~~~~~~l~~~-~~~~~~~~~~v~l~L~G~hq~~NAalAia~a~~-ll~~~G~~~~~~~~~~~~~~l 374 (646)
.++... ... ...+...... ..+.........++++|.||++|+++|+++++. + | ..
T Consensus 206 ~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~hn~~Na~aA~a~~~~l~----g-------------~~ 263 (418)
T PRK00683 206 PDDLWV----GDE-RSYGHSYLEYVQEIMRLLDKGSALKPLYLHDRYNYCAAYALANEVF----P-------------IS 263 (418)
T ss_pred cccccc----ccc-CCcCceeecCcchhhhhhccccccCCCccchHHHHHHHHHHHHHhc----C-------------CC
Confidence 221100 000 0001010000 000000001235678999999999999999987 4 5 23
Q ss_pred HHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHH
Q 006403 375 PDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAK 432 (646)
Q Consensus 375 ~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~ 432 (646)
.+++.++|+++. |+||||++... ++..+|.| +++||+|++++++
T Consensus 264 ~~~i~~~l~~~~~~~~R~e~v~~~--------------~g~~~i~Ds~~t~~~s~~~al~ 309 (418)
T PRK00683 264 EESFLEAVATFEKPPHRMEYLGEK--------------DGVHYINDSKATTVSAVEKALL 309 (418)
T ss_pred HHHHHHHHHhCCCCCCceEEEeec--------------CCeEEEEcCCCCCHHHHHHHHH
Confidence 688999999986 99999999754 25788899 7999999998876
No 42
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.93 E-value=4.7e-24 Score=233.39 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=138.5
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||++|+.+||+++|..+|-. | |.|+
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~gn-----------i---G~p~----------------------------- 126 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGGN-----------I---GTPL----------------------------- 126 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEEE-----------e---cHhH-----------------------------
Confidence 59999999999999999999999988433210 0 1111
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCC---CCcEE
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKP---QIPAF 294 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~---g~~av 294 (646)
+ . ...+.|++|+|+|+.+ ++.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..||+. +..+|
T Consensus 127 ----~-----~-~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 127 ----A-----E-LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred ----H-----h-cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 0 0 1245699999998765 3455655 6999999999999999999 999999999999863 45678
Q ss_pred EeCCchHHHHHHHHHHHhcCccEEEeccc-ccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCC
Q 006403 295 TVPQLSEAMSVLQDRALELMVPLEVAAPL-DIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQ 370 (646)
Q Consensus 295 ~~~q~~~~~~vl~~~a~~~~~~l~~~~~~-~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~ 370 (646)
+|.|++.. . ....++.++.- +.. .+..-.+.+.+. +++|+++|++++..+ |.
T Consensus 194 ~n~dd~~~----~-----~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~-~~~NalaA~a~a~~~----G~---------- 249 (401)
T PRK03815 194 LPKKFKNT----P-----TKAQKIFYEDEEDLAEKFGIDSEKINFKGP-FLLDALLALAVYKIL----FD---------- 249 (401)
T ss_pred Eecccccc----c-----cCCcEEEEecCCccccceeEehHhcCCchH-HHHHHHHHHHHHHHh----Cc----------
Confidence 88887642 1 11223222210 000 000012334555 499999999999987 51
Q ss_pred CCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeC-CCCHHHHHHHHH
Q 006403 371 GADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAK 432 (646)
Q Consensus 371 ~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDg-AHNp~sl~a~l~ 432 (646)
+.+.++|++|+ +++|||++... +|+.||.|+ +.||+|+.++++
T Consensus 250 -----~~~~~~L~~f~~~~~R~e~~~~~--------------~gv~~idDs~~tn~~a~~~al~ 294 (401)
T PRK03815 250 -----ELDYERLNAFKIGKHKLEEFRDK--------------QGRLWVDDSKATNVDATLQALK 294 (401)
T ss_pred -----HHHHHHHHhCCCCCceEEEEEEE--------------CCEEEEECCCCCCHHHHHHHHH
Confidence 33567899998 99999999754 358888886 888987777665
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.92 E-value=3.1e-24 Score=250.15 Aligned_cols=219 Identities=24% Similarity=0.264 Sum_probs=159.2
Q ss_pred HHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHH
Q 006403 121 MSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWEC 200 (646)
Q Consensus 121 ~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v 200 (646)
...++..|-...+..++|+|+||||||||||++|+++||+.+|+++|+.+|++ +.+||..+...+.
T Consensus 464 ~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G-------~~i~~~~i~~gd~------- 529 (727)
T PRK14016 464 GEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDG-------VYIDGRLIDKGDC------- 529 (727)
T ss_pred HHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCC-------EEECCEEeccccc-------
Confidence 35666666533344578999999999999999999999999999999999988 6777776643211
Q ss_pred HHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcC-CCHHHH
Q 006403 201 WHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLG-NTLNDI 279 (646)
Q Consensus 201 ~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG-~TleeI 279 (646)
..|...+ ..+....+|++|+|+|.+|.+...-...+|+++|||||+.||++.+| +|+|+|
T Consensus 530 ------------t~p~s~~-------~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~ 590 (727)
T PRK14016 530 ------------TGPKSAR-------RVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDL 590 (727)
T ss_pred ------------cCHHHHH-------HHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHH
Confidence 1121111 12356789999999999987765444558999999999999999886 699999
Q ss_pred HHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEec--c-cc--------------c---------cc---
Q 006403 280 AFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--P-LD--------------I---------EK--- 327 (646)
Q Consensus 280 A~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~--~-~~--------------~---------~~--- 327 (646)
+..|+.||+ ++..+|+|.||+....+. ......++.++ . .+ . ..
T Consensus 591 ~~~K~~i~~~v~~~g~aVlNaDD~~~~~~~----~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 666 (727)
T PRK14016 591 AKVKRVVVEAVKPDGYAVLNADDPMVAAMA----ERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEI 666 (727)
T ss_pred HHHHHHHHhhhCCCCeEEEcCCCHHHHHHH----HhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcce
Confidence 999999985 556789999998654432 22222322221 0 00 0 00
Q ss_pred ----hhcccccCcc--hhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-----CCCcEEE
Q 006403 328 ----LKRLELSLSG--DHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-----LLGRAQI 393 (646)
Q Consensus 328 ----~~~v~l~L~G--~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-----~pGR~E~ 393 (646)
...+.+.+.| .||++|+++|+|+++.+ |. .++.|.+||++|. .||||+.
T Consensus 667 ~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l----Gi-------------~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 667 RIISLADIPLTLGGKAGFNIENALAAIAAAWAL----GI-------------DIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred eeccccccceecCCcchhhHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhcCCCccCCCccccc
Confidence 0123444476 79999999999999987 62 3789999999996 8999985
No 44
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.91 E-value=1.4e-23 Score=205.23 Aligned_cols=161 Identities=25% Similarity=0.327 Sum_probs=112.6
Q ss_pred EecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHH
Q 006403 142 VSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFL 221 (646)
Q Consensus 142 VTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~l 221 (646)
||||||||||++|+.+||+++|++++.+++-. ..+.
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~------------------------------------------~~~~-- 36 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTN------------------------------------------NQIG-- 36 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCH------------------------------------------HHHH--
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCccccccccc------------------------------------------chHH--
Confidence 89999999999999999999999888876310 0011
Q ss_pred HHHHHHHhhhCCCcEEEEeeccCCCcc-ccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeC
Q 006403 222 TVLAFKIFVCEQVDVAIIEVGLGGEKD-STNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVP 297 (646)
Q Consensus 222 T~lA~~~F~~~~vD~aVlEvG~GGr~D-~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~ 297 (646)
....+..+.+.++|++|+|+|+++..+ ....+.+|+++|||||+.||+++++ |+++|+.+|+.+++ ++..+|+|.
T Consensus 37 ~~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n~ 115 (188)
T PF08245_consen 37 LPLLLLNAREGGADIAVLEVSEGGLGDERLSFLLKPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLNA 115 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGSBESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEET
T ss_pred HHHHHhhhcccccceeeeeccCCccccceeeeeeehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEecC
Confidence 111123345579999999999994333 2222137999999999999999997 99999999999998 466899999
Q ss_pred CchHHHHHHHHHHHhcCccEEEecc-------------------ccc----cchhcccccCcchhhHhhHHHHHHHH
Q 006403 298 QLSEAMSVLQDRALELMVPLEVAAP-------------------LDI----EKLKRLELSLSGDHQLVNAGLAVSLS 351 (646)
Q Consensus 298 q~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~----~~~~~v~l~L~G~hq~~NAalAia~a 351 (646)
||+...+.+. ..+.+++.++. +.. .....+.++++|.||++|+++|+++|
T Consensus 116 dd~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 116 DDPELAEIAA----NSKCKVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp TSHHHHHHHH----HHTTTEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----hcCCcEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 9985444333 33333333210 000 01124789999999999999999986
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.21 E-value=3.6e-11 Score=104.91 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=56.5
Q ss_pred CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcc
Q 006403 387 LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNG 466 (646)
Q Consensus 387 ~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (646)
||||||++... +++.||+||||||+|++++++++++..
T Consensus 1 vpgR~e~v~~~--------------~~~~vi~D~ahNp~s~~a~l~~l~~~~---------------------------- 38 (91)
T PF02875_consen 1 VPGRMEVVREP--------------NGPTVIDDYAHNPDSIRALLEALKELY---------------------------- 38 (91)
T ss_dssp ETTSSEEEEEE--------------TTEEEEEET--SHHHHHHHHHHHHHHC----------------------------
T ss_pred CCCCcEEEeeC--------------CCcEEEEECCCCHHHHHHHHHHHHHhc----------------------------
Confidence 89999999875 368999999999999999999998762
Q ss_pred ccccccccccccccCccEEEEEecCCC---CChhhhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 467 YIGHKMEKTKHANKISKQILLFNCMEA---RHPQVLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~ilvFg~~~d---Rd~~~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
+..++|+|||++++ |+.. ....+...+. ...+.++++++.
T Consensus 39 -------------~~~~~i~V~G~~~d~g~~~~~-~~~~~~~~~~---~~~d~vi~~~~~ 81 (91)
T PF02875_consen 39 -------------PKGRIIAVFGAMGDLGSKDKD-FHEEIGELAA---QLADVVILTGDN 81 (91)
T ss_dssp -------------TTSEEEEEEEEBTT-HTSHHH-CHHHHHHHHT---TCSSEEEEETSB
T ss_pred -------------cCCcEEEEEccccccccccHH-HHHHHHHHHH---hcCCEEEEcCCC
Confidence 34689999999888 6554 2233444333 236777776654
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00052 Score=72.42 Aligned_cols=141 Identities=25% Similarity=0.274 Sum_probs=86.6
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE----cCCcccc--ccceeEECCEecCHHHHHHHHHHHHHHhhhhc
Q 006403 137 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF----TSPHLID--VRERFRINGLDITEDKFLFYFWECWHLLRENV 208 (646)
Q Consensus 137 l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~----TSPhL~~--~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~ 208 (646)
-.+|+|||+ .||+|...-+-.-|++.|+||++. +||.=-- ...|||.+.....+..|.+ ...
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR----------s~~ 120 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR----------SSP 120 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe----------ecC
Confidence 369999998 579999999999999999999987 4554100 2233333332222222211 000
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEee-ccC-CCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcc
Q 006403 209 TEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEV-GLG-GEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGI 286 (646)
Q Consensus 209 ~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEv-G~G-Gr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagI 286 (646)
+. +...-..--|..+...+-..+.|++|+|+ |.| ++.|..+..+ ..+++.+. -.| +++-..|+||
T Consensus 121 sr--G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aD---t~~~v~~p-----g~G---D~~Q~iK~Gi 187 (323)
T COG1703 121 SR--GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMAD---TFLVVMIP-----GAG---DDLQGIKAGI 187 (323)
T ss_pred CC--ccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcc---eEEEEecC-----CCC---cHHHHHHhhh
Confidence 10 11111122344455667778999999998 888 7888888763 33333321 245 4555669999
Q ss_pred cCCCCcEEEeCCch
Q 006403 287 FKPQIPAFTVPQLS 300 (646)
Q Consensus 287 fk~g~~av~~~q~~ 300 (646)
+.-+-..|+|.-|.
T Consensus 188 mEiaDi~vINKaD~ 201 (323)
T COG1703 188 MEIADIIVINKADR 201 (323)
T ss_pred hhhhheeeEeccCh
Confidence 98777778887654
No 47
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.20 E-value=0.027 Score=58.75 Aligned_cols=162 Identities=25% Similarity=0.218 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE----cCCccc--cccceeEECCEecCHH
Q 006403 120 RMSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF----TSPHLI--DVRERFRINGLDITED 191 (646)
Q Consensus 120 ~~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~----TSPhL~--~~~ERI~InG~~Is~~ 191 (646)
..+++|+++- + ...+-.+|+|||+ .||+|...-+...|++.|.+||+. +||.=- =.-.|||.+...-.+.
T Consensus 14 ~~~~ll~~l~-~-~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~ 91 (266)
T PF03308_consen 14 EARELLKRLY-P-HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPG 91 (266)
T ss_dssp HHHHHHHHHG-G-GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTT
T ss_pred HHHHHHHHHH-h-hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCC
Confidence 4556666664 1 1224479999998 579999999999999999999987 455300 0112222210000000
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEee-ccC-CCccccccccCCcEEEEccCCcchh
Q 006403 192 KFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEV-GLG-GEKDSTNVIKEPVVCGVTSLGMDHM 269 (646)
Q Consensus 192 ~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEv-G~G-Gr~D~TNvi~~P~VaVITnIg~DHl 269 (646)
.| +....+. +...-.---|.-+...+...+.|++++|+ |.| .+.|..++.+ -.+-|++.-.=|-+
T Consensus 92 vf----------IRS~atR--G~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~Pg~GD~i 158 (266)
T PF03308_consen 92 VF----------IRSMATR--GSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLVPGLGDEI 158 (266)
T ss_dssp EE----------EEEE-----SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEESSTCCCC
T ss_pred EE----------EeecCcC--CCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEecCCCccHH
Confidence 00 0000000 00101111233445666778999999997 888 6788777763 33445555443443
Q ss_pred hhcCCCHHHHHHHHhcccCCCCcEEEeCCc-hHHHHHH
Q 006403 270 ELLGNTLNDIAFHKAGIFKPQIPAFTVPQL-SEAMSVL 306 (646)
Q Consensus 270 d~LG~TleeIA~~KagIfk~g~~av~~~q~-~~~~~vl 306 (646)
. ..|+||+.-.-..|+|.-| +.+....
T Consensus 159 Q----------~~KaGimEiaDi~vVNKaD~~gA~~~~ 186 (266)
T PF03308_consen 159 Q----------AIKAGIMEIADIFVVNKADRPGADRTV 186 (266)
T ss_dssp C----------TB-TTHHHH-SEEEEE--SHHHHHHHH
T ss_pred H----------HHhhhhhhhccEEEEeCCChHHHHHHH
Confidence 3 3378888755556677544 4443333
No 48
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.79 E-value=0.13 Score=54.72 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 121 MSMYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 121 ~~~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+.+|+.+.. ...+..+|+|+|.+ ||||++..+...|...|++++++.
T Consensus 20 ~~~~~~~~~~--~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMP--YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCc--ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4556666642 22345899999975 699999999999999999998765
No 49
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.95 E-value=0.25 Score=53.59 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 122 SMYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 122 ~~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.++++++- + ...+-.+|+|+|.. ||||++..+...|+..|++++++.
T Consensus 43 ~~l~~~~~-~-~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 43 QELLDALL-P-HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred HHHHHHHh-h-cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44555542 1 12234699999986 699999999999999999998864
No 50
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=93.05 E-value=0.59 Score=52.03 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=67.1
Q ss_pred hhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHH----hhhhhhhcCCC----ccccc-cCCChHHHHHHHHHhC
Q 006403 59 YAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALS----SLITRQKRGEQ----SHIAG-RYGKLQRMSMYLKILG 129 (646)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~----sl~~~~~~~~~----~~~~~-~~~~l~~~~~~L~~Lg 129 (646)
++...++.+......+..- +..+.++.-+-.|+.+.|. .|......+.. ....| +...++++.++-+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~p-~~~k~~r~ft~~e~A~~lgvs~~tlr~~~~~g~~~~~~~~~~grR~yt~~di~~lr~~l~ 100 (405)
T PRK13869 22 HAEQLSSQLQAMSEALFPP-TSHKSLRKFTSGEAARLMKISDSTLRKMTLAGEGPQPELASNGRRFYTLGQINEIRQMLA 100 (405)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCceeecHHHHHHHHHHHH
Confidence 6666677776666666552 2333444445577777773 22222112111 11112 3367777766665554
Q ss_pred -------------CCCcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 130 -------------LEDRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 130 -------------~~~p~~~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
...|..+.++|.|+ |=-||||||.-++..|...|+||.++
T Consensus 101 ~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 101 GSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred hhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 11244567899999 66679999999999999999999663
No 51
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=92.44 E-value=0.63 Score=51.54 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHhCCC---CcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 116 GKLQRMSMYLKILGLE---DRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 116 ~~l~~~~~~L~~Lg~~---~p~~~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+|+++.++.+.++.. .+..+.++|.|+ |=-|||||+.-++..|...|+||-++
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 7899999999988843 234557899999 66679999999999999999999663
No 52
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.97 E-value=2.3 Score=44.96 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCC--eEEEcCCccccccceeEECCEecCHHHHHHH
Q 006403 121 MSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFR--TGLFTSPHLIDVRERFRINGLDITEDKFLFY 196 (646)
Q Consensus 121 ~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~a~l~sIL~~~G~k--vGl~TSPhL~~~~ERI~InG~~Is~~~f~~~ 196 (646)
....++.||-.++ ..--+|+|+|+ -||+||++++..+|+..+-+ +-++|+ ||--.+...+.+
T Consensus 67 ~~~~~~~l~~~~~-~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm------------DGFhy~n~~L~~- 132 (283)
T COG1072 67 FAELLRFLGTNNQ-QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM------------DGFHYPNAVLDE- 132 (283)
T ss_pred HHHHHHHhccCCC-CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEec------------cccccCHhHhhh-
Confidence 3455566662222 23358999998 58999999999999998754 555554 454444443221
Q ss_pred HHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEE
Q 006403 197 FWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVA 237 (646)
Q Consensus 197 f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~a 237 (646)
...-.-.+-|..|..-.++.|..-++.+.+.+
T Consensus 133 ---------~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v 164 (283)
T COG1072 133 ---------RGLMARKGFPESYDVAALLRFLSDVKAGKPDV 164 (283)
T ss_pred ---------ccccccCCCCccccHHHHHHHHHHHhcCCCcc
Confidence 00011124577777666666555555555433
No 53
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=90.71 E-value=0.47 Score=52.55 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHhCCC---CcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 116 GKLQRMSMYLKILGLE---DRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 116 ~~l~~~~~~L~~Lg~~---~p~~~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+|++++++++.++.. .+..+.++|.|+ |=-||||||.-++..|...|+||-+.
T Consensus 82 ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 7899999999888632 344567899999 77789999999999999999999664
No 54
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=89.62 E-value=0.88 Score=51.33 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=30.2
Q ss_pred ccEEEEecCCC---CchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTKG---KGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTnG---KgST~a~l~sIL~~~G~kvGl~TS 171 (646)
++.|-||||.+ ||+++.-|...|++.|++|+.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 45688888864 999999999999999999998864
No 55
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=88.70 E-value=2.4 Score=40.48 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=37.1
Q ss_pred hhCCCcEEEEeeccCCCccccccccCCc-EEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeC
Q 006403 230 VCEQVDVAIIEVGLGGEKDSTNVIKEPV-VCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 297 (646)
Q Consensus 230 ~~~~vD~aVlEvG~GGr~D~TNvi~~P~-VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~ 297 (646)
...+.|++++++ .|-..+...++...+ +-++|+-. -.+.|+--|..+|+..-.+++|.
T Consensus 88 ~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 88 DAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred HhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 346899999999 552233334443333 55666644 34688889999998766666653
No 56
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=87.56 E-value=0.68 Score=45.26 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.7
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+++++|+|.+ ||||+..=+-..|++.|+++++.-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 4799999986 899999989999999999999987666
No 57
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=87.52 E-value=3.5 Score=45.48 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=30.8
Q ss_pred cccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 133 RIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 133 p~~~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+..+.++|.|+ |--||||||.-++..|...|+||.+.
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34566899988 55689999999999999999999763
No 58
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.22 E-value=1.5 Score=46.02 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=29.9
Q ss_pred CccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 136 ELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 136 ~l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
..++|.|+.. -||+||+..++..|.+.|+|||+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 4578999854 589999999999999999999986
No 59
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=86.85 E-value=0.66 Score=47.94 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=34.6
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccc
Q 006403 139 VIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLI 175 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~ 175 (646)
+|+|+|.-||||+..-+..-|+..|++|.+-||-|+.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 5899999999999999999999999999999999864
No 60
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=85.50 E-value=1.5 Score=45.50 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 118 LQRMSMYLKILGLEDRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 118 l~~~~~~L~~Lg~~~p~~~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+.++.+...|.+.......++|.|| |--||||++..++..|.+.|+||-++
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 35566666666654344556899999 55689999999999999999999654
No 61
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=84.17 E-value=1.2 Score=37.23 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=26.6
Q ss_pred EEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 140 IHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 140 IhVTGT--nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
|.|+|. -||||++..+...|++.|+++.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 566666 4999999999999999999997765
No 62
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=84.16 E-value=2.4 Score=42.43 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=30.0
Q ss_pred cccCccEEEEe---cCCCCchHHHHHHHHHHH-CCCCeEEE
Q 006403 133 RIAELKVIHVS---GTKGKGSTCTFCEAILRE-CGFRTGLF 169 (646)
Q Consensus 133 p~~~l~vIhVT---GTnGKgST~a~l~sIL~~-~G~kvGl~ 169 (646)
+....++|.|+ |--||||++..++..|.+ .|+||-+.
T Consensus 31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 44456899999 566899999999999986 69999664
No 63
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=83.94 E-value=1.8 Score=42.81 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=28.4
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 137 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 137 l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.++|.|++++ ||||++.-++..|.+.|++|-+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 6889998665 69999999999999999998653
No 64
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=83.52 E-value=3.1 Score=43.85 Aligned_cols=36 Identities=25% Similarity=0.220 Sum_probs=29.9
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+.++|.++|.+ |||||++-++..|...|++|++.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34688888765 7999999999999999999988653
No 65
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=82.38 E-value=5.3 Score=43.15 Aligned_cols=35 Identities=26% Similarity=0.165 Sum_probs=29.2
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..+|.+.|-| |||||++-++..|+..|.+|.+.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4577777765 6999999999999999999988654
No 66
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=80.71 E-value=3.7 Score=44.51 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 120 RMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 120 ~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
..|..+=+.|+- ...-..+||.| .|-.|||.++.++...|++.|+++|+.+
T Consensus 31 ~~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 31 ALRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred HHHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 344444455532 22234578888 7999999999999999999999999865
No 67
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=80.47 E-value=1.8 Score=44.52 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=26.4
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|. |--||||||.-++..|.+.|+||.+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 345554 67789999999999999999999764
No 68
>PHA02518 ParA-like protein; Provisional
Probab=79.08 E-value=2.3 Score=41.82 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=25.6
Q ss_pred EEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|.|+ |--||||++..++..|...|++|.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 56666 55569999999999999999999664
No 69
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=78.84 E-value=12 Score=37.84 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=52.6
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEcC-C----------ccccccceeEECCEecCHHHHHHHHHHHHHHhhh------
Q 006403 144 GTKGKGSTCTFCEAILRECGFRTGLFTS-P----------HLIDVRERFRINGLDITEDKFLFYFWECWHLLRE------ 206 (646)
Q Consensus 144 GTnGKgST~a~l~sIL~~~G~kvGl~TS-P----------hL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~------ 206 (646)
|-.||||++.-++..+.+.|+||-++.. | .|.++- +..-.+.....+..++......
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAF------IVEDPEIAPNLYREEVDATRRVERAWGG 81 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhh------ccCChHHHHHHHHHHHHHHHHhhhcccc
Confidence 4459999999999999999999988753 1 211110 0000111122233333211100
Q ss_pred ----hccCCCCCCCHHHHHHHHHHHHhhhCC-CcEEEEeeccC
Q 006403 207 ----NVTEDLPMPPLFQFLTVLAFKIFVCEQ-VDVAIIEVGLG 244 (646)
Q Consensus 207 ----~~~~~~~~ps~Fe~lT~lA~~~F~~~~-vD~aVlEvG~G 244 (646)
........|..-|++.+..+....+.. .|++|+-++-+
T Consensus 82 ~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 82 EGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred hhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 001112346667777765555555565 99999999754
No 70
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=78.61 E-value=2.3 Score=42.98 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=27.2
Q ss_pred cEEEEec---CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSG---TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTG---TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++ --||||++.-++..|.+.|+||.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 5777775 5589999999999999999999763
No 71
>COG2403 Predicted GTPase [General function prediction only]
Probab=78.45 E-value=3.3 Score=45.60 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=33.4
Q ss_pred ccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 137 LKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 137 l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
.|+|.|+|| -|||++++++..+|++.|||+....-|-
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPm 165 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPM 165 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCc
Confidence 378999988 5999999999999999999998888776
No 72
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=78.42 E-value=2.3 Score=40.25 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=27.0
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
|+|+|.|-+ ||||.+..|-..|...|++++.+-.-|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 578888865 899999999999999999999665433
No 73
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=78.31 E-value=2.8 Score=41.24 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=31.5
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
-|+|||- -||||.+.-+...|+..||++|=|-+|-
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 5899996 5799999999999999999998888887
No 74
>PRK05439 pantothenate kinase; Provisional
Probab=77.70 E-value=30 Score=37.43 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=27.2
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHC--CCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILREC--GFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~--G~kvGl~T 170 (646)
--+|+|||.- ||||+|..|..+|... |.++.+.+
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 3689999985 6999999999999874 56776643
No 75
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=77.39 E-value=8.8 Score=43.31 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=27.4
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 139 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 139 vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
.|-|||| .|||+++..|.+.|++.|++|..|.+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 3556665 59999999999999999999987753
No 76
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=77.23 E-value=2.7 Score=43.84 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.8
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+| =-||||||.-++..|.+.|+||-++
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 5777774 3459999999999999999999765
No 77
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=76.88 E-value=2 Score=43.01 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=23.6
Q ss_pred EEEecCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 140 IHVSGTKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 140 IhVTGTnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
||.|| .|||||++=++..+...|.++++.+.
T Consensus 7 vGptG-vGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 7 VGPTG-VGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp EESTT-SSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred ECCCC-CchHhHHHHHHHHHhhccccceeecC
Confidence 44444 38999999999999988999999764
No 78
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.26 E-value=7.6 Score=43.12 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=51.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccC-C--
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTE-D-- 211 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~-~-- 211 (646)
..||-..|-+ ||||||.=++..++..|+|+++..--- .-.. +| ++|+.+.+. .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT--------------FRag----Af----DQLkqnA~k~~iP 158 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT--------------FRAG----AF----DQLKQNATKARVP 158 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc--------------cccc----hH----HHHHHHhHhhCCe
Confidence 3566666543 799999999999999999998864321 1111 22 444443221 0
Q ss_pred ----CCCCCHHHHHHHHHHHHhhhCCCcEEEEeec
Q 006403 212 ----LPMPPLFQFLTVLAFKIFVCEQVDVAIIEVG 242 (646)
Q Consensus 212 ----~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG 242 (646)
.....+.. +..-+...|.++++|++|+.++
T Consensus 159 ~ygsyte~dpv~-ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 159 FYGSYTEADPVK-IASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred eEecccccchHH-HHHHHHHHHHhcCCcEEEEeCC
Confidence 01112222 2344678899999999999984
No 79
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=76.00 E-value=3.1 Score=43.00 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=31.9
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 137 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 137 l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+++|.|+| -.||||++.-+...|++.|++|+++...|
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 36899999 56899999999999999999999987555
No 80
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=75.79 E-value=3 Score=42.92 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=30.7
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+.+-||||. |||.+++.+.+.|++.|++++.|-
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 3678899997 999999999999999999998874
No 81
>PRK14974 cell division protein FtsY; Provisional
Probab=75.79 E-value=5.4 Score=43.50 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=30.0
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..+|.++|-+ |||||++-++..|+..|+++++.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4688888876 6999999999999999999988654
No 82
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=75.31 E-value=3.3 Score=41.43 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=26.1
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|+|+| =-|||||+.-++..|.+.|+||.+.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 577775 4479999999999999999999664
No 83
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=74.90 E-value=20 Score=42.71 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=28.2
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 139 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 139 vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
.|-|+|| .|||++|.-|...|++.|++||.|- |-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK-Pi 40 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK-PI 40 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC-Cc
Confidence 3455544 6899999999999999999999987 53
No 84
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=74.63 E-value=3.4 Score=43.06 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.5
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|+|+ |=-|||||+.-|+..|.+.|+||.++
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 577777 44579999999999999999999875
No 85
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=73.65 E-value=25 Score=37.59 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.4
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILREC 162 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~ 162 (646)
.-+|+|+|.| ||||++.++..+|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3699999987 6999999999999853
No 86
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=71.76 E-value=8.5 Score=41.17 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCCcccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 121 MSMYLKILGLEDRIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 121 ~~~~L~~Lg~~~p~~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.+.+.++. ..+..+-++|.|+|.| ||||++.-++..|.+.|++|.+.
T Consensus 78 l~~~l~~~~-~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 78 LVELLADLD-QSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred HHHHHHhhc-cCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 334444443 1233455888888766 69999999999999999998764
No 87
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=71.41 E-value=3.9 Score=40.37 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=28.5
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 139 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 139 vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.|-|+|| -|||++|.-+...|++.|.++|+|-
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~K 36 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFK 36 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5778888 5999999999999999999999874
No 88
>PRK15453 phosphoribulokinase; Provisional
Probab=70.92 E-value=5 Score=42.88 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=26.6
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl 168 (646)
+-++|+|||+. ||||++..++.+|+..|.++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~v 38 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAV 38 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence 44799999985 6889999999999887765533
No 89
>PRK06761 hypothetical protein; Provisional
Probab=70.73 E-value=31 Score=36.80 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=38.3
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHH
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 197 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f 197 (646)
++|.|+|- .||||++..+..-|...|+++..+.-+-.....|- ..+..++.++|....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l 63 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLL 63 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHH
Confidence 46778874 58999999999999988988877654332111121 134556777776544
No 90
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=69.87 E-value=5.2 Score=45.14 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=32.5
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 137 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 137 l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+++|+|+| -.||||.+.-|-..|++.|+||+++-..|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 36899999 66999999999999999999999987655
No 91
>PRK10037 cell division protein; Provisional
Probab=69.77 E-value=5.2 Score=41.14 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=26.9
Q ss_pred cEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+.. -||||||.-++..|.+.|+||-++
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 57787754 579999999999999999999653
No 92
>CHL00175 minD septum-site determining protein; Validated
Probab=69.12 E-value=5.3 Score=41.64 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=28.3
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ ||||++.-++..|.+.|++|.++
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 689988665 79999999999999999999775
No 93
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=69.11 E-value=5.6 Score=40.42 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.4
Q ss_pred cEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+++ -||||++.-++..|.+.|+||.++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 57788755 579999999999999999999775
No 94
>PRK11670 antiporter inner membrane protein; Provisional
Probab=68.85 E-value=5.4 Score=43.96 Aligned_cols=33 Identities=33% Similarity=0.425 Sum_probs=29.0
Q ss_pred ccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 137 LKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 137 l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.++|.|+ |--|||||+.-|+..|.+.|+||++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3789998 55589999999999999999999874
No 95
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=68.24 E-value=12 Score=40.86 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCCcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 120 RMSMYLKILGLEDRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 120 ~~~~~L~~Lg~~~p~~~l~vIhV----TGTnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
..+..+.+.| ...-..+||.| .|-+|||-++..+..-|++.|+++|.++--+
T Consensus 32 ~~r~~~~~~g--~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 32 GLRRKLAKKG--SYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred HHHHHHhccc--cccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 3444444454 12234577764 6999999999999999999999999876433
No 96
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=68.19 E-value=5.4 Score=41.45 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=26.2
Q ss_pred EEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|+|. |=.||||||.-++..|.+.|+||.++
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666 45579999999999999999999775
No 97
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=67.98 E-value=6.6 Score=38.11 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=29.1
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
++|+|.| -.||||.+.-+...|...|+++|.+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 6899998 468999999999999999999998753
No 98
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=67.76 E-value=6.2 Score=40.27 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=27.6
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 139 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 139 vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.|-|||| -|||.++..+...|++.|+++|.|-
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~K 38 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYK 38 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4566665 7999999999999999999999884
No 99
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=67.41 E-value=14 Score=41.64 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=23.2
Q ss_pred EEEecC---CCCchHHHHHHHHHHHCCCCeE
Q 006403 140 IHVSGT---KGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 140 IhVTGT---nGKgST~a~l~sIL~~~G~kvG 167 (646)
|-|+|| .||||++.-|-..|+..|++|-
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 566776 4999999999999999987663
No 100
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=67.22 E-value=7.2 Score=42.43 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=31.1
Q ss_pred cccCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 133 RIAELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 133 p~~~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.++.++|.|+| .-||||++.-++..|.+.|+||++.
T Consensus 27 ~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 27 PTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 335667888884 6689999999999999999999876
No 101
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=66.93 E-value=7.3 Score=40.31 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.3
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|-|| |--|||||++-+...|...|.||.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 578888 67789999999999999999998765
No 102
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=66.79 E-value=6.6 Score=41.69 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=28.3
Q ss_pred CccEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 136 ELKVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 136 ~l~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++++|.|. |--|||||+.-|+..|.+.|+||-++
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45677776 45679999999999999999999775
No 103
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=66.69 E-value=6.5 Score=40.68 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=25.5
Q ss_pred EEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|.|+ |=-||||||.-++..|.+.|+||.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 45666 44579999999999999999999663
No 104
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=66.64 E-value=13 Score=40.02 Aligned_cols=38 Identities=24% Similarity=0.499 Sum_probs=32.0
Q ss_pred CccEEEEe----cCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 136 ELKVIHVS----GTKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 136 ~l~vIhVT----GTnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
..+||.|- |-.|||-++.+|...|++.|+++|+.+=.+
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 45788773 888999999999999999999999876433
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=66.33 E-value=5.4 Score=45.55 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=29.9
Q ss_pred cEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+.|-|||| -|||+++..|...|++.|++|+.|-.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45788888 79999999999999999999998753
No 106
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=66.30 E-value=6.9 Score=40.22 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=27.4
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++.| |||||+..++..|...|++|.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 578887555 69999999999999999999764
No 107
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=66.04 E-value=6.6 Score=41.87 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.8
Q ss_pred EEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|+|. |--|||||+.-++.+|.+.|+||.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45554 56689999999999999999999764
No 108
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=65.12 E-value=7.2 Score=40.36 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=26.4
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+ |=-||||||.-|+..|.+.|+||-+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 566666 55579999999999999999998653
No 109
>PRK07667 uridine kinase; Provisional
Probab=65.10 E-value=13 Score=36.75 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=30.9
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
.+|+|+|- .||||+|..|...|+..|.++.++....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 69999986 5899999999999999999887776554
No 110
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=64.96 E-value=11 Score=38.60 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=37.3
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEE------EcCCccccccceeEECCEecC
Q 006403 135 AELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGL------FTSPHLIDVRERFRINGLDIT 189 (646)
Q Consensus 135 ~~l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl------~TSPhL~~~~ERI~InG~~Is 189 (646)
.+.-+|+|||- .||||.|..|...|... ++.+ |-+.....+.||..+|..-.+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~ 66 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYDHPE 66 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCccChh
Confidence 55579999984 68999999999999854 3433 455666666777777754433
No 111
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=64.50 E-value=16 Score=38.65 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHhCCCC--cccCccEEEEecCCCCchHHHHHHHHHHHCCCC
Q 006403 122 SMYLKILGLED--RIAELKVIHVSGTKGKGSTCTFCEAILRECGFR 165 (646)
Q Consensus 122 ~~~L~~Lg~~~--p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~k 165 (646)
.+...++|+.. |...+-++|=+|| |||+++..++..|...|+.
T Consensus 44 ~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 44 ERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 34445667642 3333446788899 9999999999999987763
No 112
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=64.36 E-value=7.7 Score=41.06 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.0
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+++|+|+| -.||||.+.-|...|++.| +|+++-.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 36899999 7799999999999999999 8998765
No 113
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=64.33 E-value=7.3 Score=40.69 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=26.5
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+ |=-||||||.-++..|.+.|+||-++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 456666 45579999999999999999999664
No 114
>PRK13236 nitrogenase reductase; Reviewed
Probab=64.05 E-value=8.7 Score=40.80 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.1
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.++++|.|-| =-|||||+.-|+..|.+.|+||.++
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3457777764 4579999999999999999999886
No 115
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.70 E-value=12 Score=44.93 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=30.5
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
...++|.||++. ||||++.-++..|...|.||-+.
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 455899999877 99999999999999999998653
No 116
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=62.78 E-value=8.6 Score=39.97 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=26.2
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHH-CCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRE-CGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~-~G~kvGl~ 169 (646)
++|.|+ |=-|||||+.-++..|.+ .|+||.++
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 577777 445699999999999997 69999775
No 117
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=62.68 E-value=8 Score=38.78 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=26.2
Q ss_pred EEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 140 IHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 140 IhVTGT---nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
|-|||| -|||+++..+...|++.|++++.|-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 344544 6999999999999999999999875
No 118
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=62.30 E-value=7.3 Score=37.54 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=25.5
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 139 VIHVSGTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+.+.-|=-||||++..++..|...|++|.++-
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccc
Confidence 34445667899999999999999999997753
No 119
>PRK11519 tyrosine kinase; Provisional
Probab=62.25 E-value=14 Score=44.37 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCCcccCccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 121 MSMYLKILGLEDRIAELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 121 ~~~~L~~Lg~~~p~~~l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|.+-..|.+..+..+.++|.||++ -||||++.-++..|...|.||-+.
T Consensus 510 ~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 510 IRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred HHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3333333333223345589999985 599999999999999999999664
No 120
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=61.67 E-value=9.7 Score=38.47 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.0
Q ss_pred EEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|.|+ |--||||++.-++..|.+.|++|.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56665 55689999999999999999999765
No 121
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=61.49 E-value=8.5 Score=37.07 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=27.1
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 139 VIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+|.|+|.+ ||||++..+...|+..|++++++-.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 46677754 7999999999999999999998763
No 122
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=61.11 E-value=17 Score=40.01 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 116 GKLQRMSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 116 ~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+..++.+++.++..- .+..+.++|+|+|. .||||.+.-+-..|++.|+++|+....|
T Consensus 185 NTpeDl~~l~~~~~~-~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 185 NTPEDLEQLRAIPDG-TTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CCHHHHHHHhhhhhc-ccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 344555555444321 23346789999995 5899998888999999999999877444
No 123
>PLN02796 D-glycerate 3-kinase
Probab=60.66 E-value=12 Score=40.99 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=34.0
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDK 192 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~ 192 (646)
-+|+|+|.+ ||||++..|..+|...|.++|. |.+||..++.++
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~------------IsiDdfYLt~~e 145 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAAS------------LSIDDFYLTAAD 145 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeE------------EEECCcccchhh
Confidence 589999975 7999999999999887877765 556777666544
No 124
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.62 E-value=10 Score=41.27 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=28.5
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl 168 (646)
+..+|-+.|.| |||||.+=|+..|.+.|++|-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 46788888887 5999999999999999999854
No 125
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=60.16 E-value=8.8 Score=36.47 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=25.0
Q ss_pred EEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 141 HVSGTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 141 hVTGTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.-.|--||||++..++..|.+.|++|.++
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 33466799999999999999999999875
No 126
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=60.14 E-value=14 Score=41.85 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=36.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHH
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFL 194 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~ 194 (646)
.-+|+|+|-+ ||||.+..|..+|+..|++++. |.+||..++.++..
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgv------------ISiDDfYLt~eer~ 259 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSAT------------LSIDDFYLTAEGQA 259 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEE------------EEECCccCChHHHH
Confidence 3589999975 6999999999999988888876 56788887666543
No 127
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=60.02 E-value=9 Score=40.66 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=26.2
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVSGTK--GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|+|||.. ||||++.-+..+|+..|.++.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI 33 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVV 33 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 58999975 79999999999999988877654
No 128
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=59.93 E-value=8.9 Score=39.03 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=23.2
Q ss_pred EEEEecCC--CCchHHHHHHHHHHH--CCCCeEE
Q 006403 139 VIHVSGTK--GKGSTCTFCEAILRE--CGFRTGL 168 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL~~--~G~kvGl 168 (646)
+|+|+|.+ ||||++..|..+|+. .+.++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v 34 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL 34 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence 58888876 699999999999986 3445543
No 129
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=59.90 E-value=11 Score=36.02 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.2
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 144 GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 144 GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
|--||||++.-++..|.+.|+||-++
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 56689999999999999999999764
No 130
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=59.52 E-value=7.7 Score=38.55 Aligned_cols=24 Identities=33% Similarity=0.796 Sum_probs=18.4
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCCCCe
Q 006403 139 VIHVSGTK--GKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL~~~G~kv 166 (646)
.|.||||= ||||+|..|+ ..|+++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 69999995 6888887666 567765
No 131
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=59.36 E-value=12 Score=39.96 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=35.0
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE-------cCCcccccccee
Q 006403 138 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF-------TSPHLIDVRERF 181 (646)
Q Consensus 138 ~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~-------TSPhL~~~~ERI 181 (646)
.+|.|+ |--||+||+..++..|...|++||++ +=|.+.....|.
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~ 101 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV 101 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce
Confidence 578887 77899999999999999999999987 235555555444
No 132
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=59.14 E-value=22 Score=38.94 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 120 RMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 120 ~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
.+|+.+-+.|.- ...-..+||.| .|-.|||-++.+|...|++.|+++|+.+-
T Consensus 38 ~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 94 (338)
T PRK01906 38 ALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSR 94 (338)
T ss_pred HHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEec
Confidence 344444445532 12234678876 58899999999999999999999998753
No 133
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=58.73 E-value=8.6 Score=37.91 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCC
Q 006403 139 VIHVSG--TKGKGSTCTFCEAILRECGFR 165 (646)
Q Consensus 139 vIhVTG--TnGKgST~a~l~sIL~~~G~k 165 (646)
||+|+| ..||||++..|..+|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688887 579999999999999998876
No 134
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=58.64 E-value=12 Score=35.02 Aligned_cols=32 Identities=31% Similarity=0.212 Sum_probs=25.4
Q ss_pred cEEEEec---CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSG---TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTG---TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|+|.| --|||+++.-++..|.+.|.+|.++
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vlli 35 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLI 35 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 4666666 5589999999999999999997654
No 135
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=58.26 E-value=19 Score=40.79 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=28.5
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..+|.++|- .|||||++-++..|.+.|++|++.+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 456666664 48999999999999999999988654
No 136
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=58.19 E-value=9.7 Score=39.98 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=24.9
Q ss_pred EEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|.|+ |--||+||+.=++-.|...|+|||++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 56666 66789999999999999999999985
No 137
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.46 E-value=28 Score=39.25 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=27.6
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
.+|-..| -.||||||+=++.-|+..|+|+++...
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa 136 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA 136 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec
Confidence 4555555 269999999999999999999988654
No 138
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=57.43 E-value=30 Score=37.57 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 120 RMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 120 ~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
.+|..+-..|+- ...-..+||.| +|-.|||-++.++...|++.|+++++.+-.+
T Consensus 17 ~~R~~~y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 17 SLRNFLYDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred HHHHHHHhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 344444445532 22335678876 5889999999999999999999999887554
No 139
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=57.03 E-value=12 Score=36.76 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.4
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+|+|+|. .||||.+..+...|...|.++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4778876 5899999999999999888876653
No 140
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=56.67 E-value=6.3 Score=40.72 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=25.4
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|. |=-||||||.-|+..|.+.| ||.++
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 456665 56689999999999999999 98764
No 141
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.92 E-value=22 Score=40.15 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=29.4
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..+|.++|- .|||||++-++..|+..|++|++.+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 467888875 47999999999999999999988654
No 142
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=55.88 E-value=1.1e+02 Score=32.00 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=24.5
Q ss_pred ecCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 143 SGTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 143 TGTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
-|--|||++++.++..|...|.+|.++
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 377899999999999999999999887
No 143
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.19 E-value=21 Score=37.69 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=28.0
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHC-C-CCeEEEcC
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILREC-G-FRTGLFTS 171 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~-G-~kvGl~TS 171 (646)
+-.+|.+.|-+ |||||++-++.-+... | ++|++++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34578887754 7999999999888765 5 89998774
No 144
>PRK10818 cell division inhibitor MinD; Provisional
Probab=55.10 E-value=14 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=26.7
Q ss_pred cEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++. -||||++.-++..|.+.|++|.+.
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllv 37 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 57777754 579999999999999999998653
No 145
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=54.54 E-value=15 Score=38.07 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.5
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
++|-++ |-.||||++.+|++.|.+.|.+|.++=
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456555 566899999999999999999998863
No 146
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=54.16 E-value=10 Score=43.20 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=26.8
Q ss_pred EecC---CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 142 VSGT---KGKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 142 VTGT---nGKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
|||| -|||.+|+.|..+|++.|++|+.|..-
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 4544 799999999999999999999988753
No 147
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=54.04 E-value=13 Score=42.11 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.9
Q ss_pred ecC-CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 143 SGT-KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 143 TGT-nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
|+| -|||+++.-|...|++.|++|+.|-
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 444 6999999999999999999999886
No 148
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=52.52 E-value=12 Score=36.62 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=19.6
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHH
Q 006403 135 AELKVIHVSGT--KGKGSTCTFCEAIL 159 (646)
Q Consensus 135 ~~l~vIhVTGT--nGKgST~a~l~sIL 159 (646)
...|-|-|||| .||||+|..++..+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 44577999999 47999999888544
No 149
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=52.09 E-value=12 Score=38.77 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.5
Q ss_pred ecCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 143 SGTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 143 TGTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
-|=-||||||.-++..|.+.|+||-++
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 366789999999999999999998654
No 150
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=51.87 E-value=12 Score=34.87 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 146 KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 146 nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
-|||+++.-+...|++.|++++.|-
T Consensus 10 ~Gkt~~~~~l~~~l~~~~~~v~~~k 34 (134)
T cd03109 10 IGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred cCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6999999999999999999999873
No 151
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=51.69 E-value=36 Score=33.56 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHCCCCeEEEcCCcccc
Q 006403 150 STCTFCEAILRECGFRTGLFTSPHLID 176 (646)
Q Consensus 150 ST~a~l~sIL~~~G~kvGl~TSPhL~~ 176 (646)
+|+.++.++++..|-|+|++++.+..+
T Consensus 63 gTT~~tNAl~e~~g~~v~li~~~G~~d 89 (176)
T PF05378_consen 63 GTTVATNALLERKGARVGLITTGGFGD 89 (176)
T ss_pred ccHHHHHHHHhccCCCceEEeccCcHh
Confidence 357889999999999999998876444
No 152
>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....
Probab=51.63 E-value=2.6 Score=35.75 Aligned_cols=43 Identities=5% Similarity=-0.009 Sum_probs=38.5
Q ss_pred cccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhcccccccc
Q 006403 26 VRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALT 76 (646)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
..+..|||...|+..|.+++|.|+.|+. | +.+++++++..+.+
T Consensus 3 ~~i~~dSr~v~~g~lF~a~~G~~~dG~~-----f---i~~a~~~Ga~~~~~ 45 (83)
T PF01225_consen 3 HGISIDSRKVSPGALFFAIKGERVDGHD-----F---IEDAIAKGAAAVVV 45 (83)
T ss_dssp EEEETTSGGHHHHHHHHHHTTSEEEEEC-----S---CHHHHHTT-EEEES
T ss_pred EEEEECcCccChhHEEEEcCCccccchh-----h---hhHHHHCCCeEEEE
Confidence 3467899999999999999999999999 8 88999999999998
No 153
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.42 E-value=28 Score=39.18 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=28.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
.+|.+.|-+ |||||++-|+.-|...|+++++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 567776654 7999999999999999999998764
No 154
>COG4240 Predicted kinase [General function prediction only]
Probab=50.98 E-value=32 Score=36.02 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=29.2
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHHHHCC-CCeEEE
Q 006403 135 AELKVIHVSGT--KGKGSTCTFCEAILRECG-FRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGT--nGKgST~a~l~sIL~~~G-~kvGl~ 169 (646)
.+--+|+|.|. .||+|++..|..+|.+.| ++|+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 34468999997 579999999999999988 688764
No 155
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=50.42 E-value=15 Score=38.31 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=24.0
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeE
Q 006403 139 VIHVSGTKGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~G~kvG 167 (646)
++++.|=-||||+++-++..|...|.+|-
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vl 34 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVL 34 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 34445666899999999999999999984
No 156
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=50.37 E-value=19 Score=35.61 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=29.4
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 136 ELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 136 ~l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..++|+|+|- .||||...-+-..|...|+++|.+.-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 4579999995 47888888888889999999998763
No 157
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=49.95 E-value=10 Score=42.36 Aligned_cols=45 Identities=16% Similarity=0.401 Sum_probs=29.0
Q ss_pred CccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHH
Q 006403 136 ELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 195 (646)
Q Consensus 136 ~l~vIhVTGTnG--KgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~ 195 (646)
+-.++-++|.|| |+|.|.++. |+|- |. .-+|+.||.|+|.+...+
T Consensus 348 rGelvFliG~NGsGKST~~~LLt----------GL~~-Pq----sG~I~ldg~pV~~e~led 394 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLT----------GLYQ-PQ----SGEILLDGKPVSAEQLED 394 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHh----------cccC-CC----CCceeECCccCCCCCHHH
Confidence 334788999997 555554443 4443 21 235999999999876544
No 158
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.73 E-value=33 Score=39.33 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=26.3
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHH-HCC-CCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILR-ECG-FRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~-~~G-~kvGl~T 170 (646)
-.+|++.|-| |||||+..|+..+. ..| .+|++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3688888876 69999999999884 455 4788754
No 159
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=49.05 E-value=20 Score=31.19 Aligned_cols=31 Identities=32% Similarity=0.288 Sum_probs=26.1
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVSGTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+++--|--||||++.-++..|.+.|.++.+.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~ 34 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLI 34 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3445578899999999999999999998775
No 160
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=48.23 E-value=20 Score=42.08 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=32.9
Q ss_pred CccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 136 ELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 136 ~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
..++|+|.| =.||||.+.-+-..|++.|+|||++-..|
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 358999999 56899999999999999999999988655
No 161
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.99 E-value=34 Score=41.13 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=29.2
Q ss_pred cCccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
...++|.||++ -||||++.-++..|...|.||-+.
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 45578998865 589999999999999999998653
No 162
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=45.30 E-value=64 Score=33.47 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.0
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 144 GTKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 144 GTnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
|--||||+++-++..+.+.|+||-++..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 4569999999999999999999877643
No 163
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=45.25 E-value=18 Score=38.40 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=24.9
Q ss_pred EEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 140 IHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 140 IhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
|.|+ |--||||||.-++..|...|+||-++
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4444 56689999999999999999998653
No 164
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=44.66 E-value=1.2e+02 Score=29.22 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=40.1
Q ss_pred hCCCcEEEEeeccCCCc-----cccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCC--cEEEeCCchHHH
Q 006403 231 CEQVDVAIIEVGLGGEK-----DSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI--PAFTVPQLSEAM 303 (646)
Q Consensus 231 ~~~vD~aVlEvG~GGr~-----D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~--~av~~~q~~~~~ 303 (646)
...+|++++=....-.. --.+++.+|.++|||-++.+. +-+++.+.|.-+-..|. +..++.-..+..
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~------~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPS------DDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCcc------chhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 45789988887655221 113456689999999988762 33455554443333222 334444444444
Q ss_pred HHHHH
Q 006403 304 SVLQD 308 (646)
Q Consensus 304 ~vl~~ 308 (646)
+-|.+
T Consensus 135 ~eL~~ 139 (143)
T PF10662_consen 135 EELKD 139 (143)
T ss_pred HHHHH
Confidence 44443
No 165
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=44.48 E-value=20 Score=34.06 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 146 KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 146 nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
-|||+++.-+...|++.|+||+++
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 699999999999999999999986
No 166
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.25 E-value=39 Score=37.66 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=24.6
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHH----CCCCeEEEcC
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRE----CGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~----~G~kvGl~TS 171 (646)
.+|.+.|-+ |||||++-++..|.. .|.+|++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~ 214 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI 214 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence 455555444 799999999998874 4788888653
No 167
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=43.80 E-value=31 Score=33.07 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.4
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
+|.|.|. .||||.+..|+..|...|+++-....|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5777775 489999999999999999988655444
No 168
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.43 E-value=44 Score=37.69 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=25.9
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHH--HHCCCCeEEEcCCc
Q 006403 135 AELKVIHVSGTK--GKGSTCTFCEAIL--RECGFRTGLFTSPH 173 (646)
Q Consensus 135 ~~l~vIhVTGTn--GKgST~a~l~sIL--~~~G~kvGl~TSPh 173 (646)
++-.+|++.|-| |||||.+.|+..+ +..+.++++.+...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 344688888887 5899998888643 33345677765433
No 169
>PRK10867 signal recognition particle protein; Provisional
Probab=43.23 E-value=41 Score=38.10 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=28.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHC-CCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILREC-GFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~-G~kvGl~TS 171 (646)
..+|.++|-+ |||||++-++..|... |++|.+.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4577777754 7999999999999888 999988653
No 170
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=43.18 E-value=26 Score=39.16 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=27.2
Q ss_pred cEEEEecC--CCCchHHHHHHHHHH--HCCCCeEEEcCCc
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILR--ECGFRTGLFTSPH 173 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~--~~G~kvGl~TSPh 173 (646)
++|..-|. -|||||.+=|++.+. ..-+|||++|+--
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 56666665 479999999999888 4457899988754
No 171
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=42.73 E-value=37 Score=38.26 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=26.8
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH--HCCCCeEEEcC
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR--ECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~--~~G~kvGl~TS 171 (646)
.+|.+.|-+ |||||+.-++..+. ..|++|++++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 477777755 79999999988886 56789998764
No 172
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=40.68 E-value=1.9e+02 Score=31.54 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=60.2
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEEcC-C--ccccccce--------eE--ECCEecCHH-HHHHHHHHHH
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLFTS-P--HLIDVRER--------FR--INGLDITED-KFLFYFWECW 201 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~TS-P--hL~~~~ER--------I~--InG~~Is~~-~f~~~f~~v~ 201 (646)
++|-++ |=-||||+++-++-.|.+.|.||-+.++ | +|-++... |. +++..|+.+ .+.+|+.++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence 345555 6679999999999999999988766643 2 23332222 21 234555544 3445555555
Q ss_pred HHhhhhccCC----------CCCCCHHHHHHHHHHHHhh-hCCCcEEEEee
Q 006403 202 HLLRENVTED----------LPMPPLFQFLTVLAFKIFV-CEQVDVAIIEV 241 (646)
Q Consensus 202 ~~l~~~~~~~----------~~~ps~Fe~lT~lA~~~F~-~~~vD~aVlEv 241 (646)
+.+....... ...|..=|++.+.++.-+. +.+.|++|+-+
T Consensus 83 ~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~Dt 133 (322)
T COG0003 83 DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDT 133 (322)
T ss_pred HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 5444322211 1246666666666665554 44568887776
No 173
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=40.61 E-value=29 Score=31.75 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.7
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 144 GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 144 GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
|-.|||+++..++..|.+.|.++.++.
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999999987654
No 174
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=39.81 E-value=53 Score=33.28 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=25.1
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCe
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kv 166 (646)
+-.+|+|+|-| ||||.+..|..+|+..+-.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 34799999987 58899999999999876543
No 175
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=39.77 E-value=34 Score=36.72 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.6
Q ss_pred EEEEe--cCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 139 VIHVS--GTKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 139 vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+|-++ |--||||+++.++--+.+.|+||-+.++
T Consensus 3 ~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 3 ILFFGGKGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred EEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 44444 7889999999999999999999988754
No 176
>PRK12377 putative replication protein; Provisional
Probab=39.25 E-value=26 Score=36.60 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=24.7
Q ss_pred EEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 140 IHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 140 IhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
.|=+|| |||..+..+...|.+.|+++.+++.+.
T Consensus 107 ~G~~Gt-GKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 107 SGKPGT-GKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred ECCCCC-CHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 344444 899999999999988899886665544
No 177
>PRK06696 uridine kinase; Validated
Probab=38.49 E-value=73 Score=32.15 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=26.1
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 006403 137 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 137 l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvG 167 (646)
..+|+|+|- .||||.+..|...|...|.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~ 54 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVI 54 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 369999974 6899999999999998886553
No 178
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=1.5e+02 Score=32.89 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=36.8
Q ss_pred CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhh
Q 006403 132 DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLR 205 (646)
Q Consensus 132 ~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~ 205 (646)
.|.+ +-+.|-+|| |||.|..++..-|+..-.+.. -+.||....... -+.+.++|+.+.
T Consensus 41 ~p~n-~~iyG~~GT-GKT~~~~~v~~~l~~~~~~~~------------~~yINc~~~~t~--~~i~~~i~~~~~ 98 (366)
T COG1474 41 RPSN-IIIYGPTGT-GKTATVKFVMEELEESSANVE------------VVYINCLELRTP--YQVLSKILNKLG 98 (366)
T ss_pred CCcc-EEEECCCCC-CHhHHHHHHHHHHHhhhccCc------------eEEEeeeeCCCH--HHHHHHHHHHcC
Confidence 3543 456667776 899999999999987633332 155676655432 245556666664
No 179
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=37.82 E-value=33 Score=30.52 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.6
Q ss_pred ecCCCCchHHHHHHHHHHHC-CCCeEEE
Q 006403 143 SGTKGKGSTCTFCEAILREC-GFRTGLF 169 (646)
Q Consensus 143 TGTnGKgST~a~l~sIL~~~-G~kvGl~ 169 (646)
-|.-||||++.-++..|.+. |++|.+.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 35568999999999999998 9999876
No 180
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.67 E-value=57 Score=36.86 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=26.6
Q ss_pred cEEEEecC--CCCchHHHHHHHHHH-HCCCCeEEEcC
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILR-ECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~-~~G~kvGl~TS 171 (646)
.+|.++|. .|||||++-++..|. +.|++|.+.+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46666665 579999999999887 58999988653
No 181
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=37.37 E-value=23 Score=35.97 Aligned_cols=30 Identities=33% Similarity=0.484 Sum_probs=21.4
Q ss_pred cCccEEEEecCCCCchHHH--HHHHHHHHCCC
Q 006403 135 AELKVIHVSGTKGKGSTCT--FCEAILRECGF 164 (646)
Q Consensus 135 ~~l~vIhVTGTnGKgST~a--~l~sIL~~~G~ 164 (646)
.+.++|+|||+.|-|||+. -.+.|+++...
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I 34 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNI 34 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCc
Confidence 3568999999999877654 44566666443
No 182
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=36.50 E-value=35 Score=41.65 Aligned_cols=34 Identities=15% Similarity=-0.038 Sum_probs=30.9
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 136 ELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 136 ~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.++.+-||||| |||-+++.|.+.|+..|.+++.+
T Consensus 26 ~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 26 SCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 56899999998 99999999999999999998765
No 183
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=36.25 E-value=26 Score=31.16 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=18.9
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kv 166 (646)
+|.|+|. .||||+|..|+.-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 5777776 48999999998877 5544
No 184
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=35.72 E-value=77 Score=32.75 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=34.7
Q ss_pred ceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC
Q 006403 179 ERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG 244 (646)
Q Consensus 179 ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G 244 (646)
|+++-+..++....|+..+.+..+..+. ..| ...++|.-......|+|||.|
T Consensus 35 ~~~~~~~~~~p~~~ft~~yne~~~~ykr---------elF-----s~i~~~~gk~~K~~vLEvgcG 86 (252)
T KOG4300|consen 35 ESRQKSDLLIPNSNFTSIYNEIADSYKR---------ELF-----SGIYYFLGKSGKGDVLEVGCG 86 (252)
T ss_pred HhcCccccccchhHHHHHHHHHHHHHHH---------HHH-----hhhHHHhcccCccceEEeccc
Confidence 4567777888888887766555443321 111 234567778889999999998
No 185
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=34.26 E-value=2.2e+02 Score=28.24 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=24.4
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHC--CCCeEEEc
Q 006403 135 AELKVIHVSGTKGKGSTCTFCEAILREC--GFRTGLFT 170 (646)
Q Consensus 135 ~~l~vIhVTGTnGKgST~a~l~sIL~~~--G~kvGl~T 170 (646)
...++|+++|..|-|-|+- +.+++++. +.+++++.
T Consensus 20 ~~~~~i~~~G~~gsGKTTl-i~~l~~~~~~~~~v~v~~ 56 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTL-IEKLIDNLKDEVKIAVIE 56 (207)
T ss_pred cCcEEEEEECCCCCCHHHH-HHHHHHHHhcCCeEEEEE
Confidence 3568999999998888764 44455553 45777665
No 186
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=34.16 E-value=35 Score=35.72 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=23.4
Q ss_pred EEEEe--cCCCCchHHHH-HHHHHHHCCCCe
Q 006403 139 VIHVS--GTKGKGSTCTF-CEAILRECGFRT 166 (646)
Q Consensus 139 vIhVT--GTnGKgST~a~-l~sIL~~~G~kv 166 (646)
.|+|| |-.||||.+++ +..++...|++|
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 57888 56899999999 788888878887
No 187
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=34.00 E-value=60 Score=35.36 Aligned_cols=39 Identities=33% Similarity=0.480 Sum_probs=33.5
Q ss_pred cccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 133 RIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 133 p~~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+..+.++|.|-||- ||=||+..+...+++.|+++++..|
T Consensus 144 ~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaT 185 (339)
T COG3367 144 RKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVAT 185 (339)
T ss_pred cccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEec
Confidence 33446799999995 9999999999999999999887755
No 188
>PRK03846 adenylylsulfate kinase; Provisional
Probab=33.96 E-value=59 Score=32.11 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=24.2
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCe
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kv 166 (646)
.+|.++| -.||||.+..|+..|...|..+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 6899999 6689999999999888777655
No 189
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.88 E-value=39 Score=34.62 Aligned_cols=31 Identities=35% Similarity=0.382 Sum_probs=24.6
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHH-HCCCCeEE
Q 006403 138 KVIHVS---GTKGKGSTCTFCEAILR-ECGFRTGL 168 (646)
Q Consensus 138 ~vIhVT---GTnGKgST~a~l~sIL~-~~G~kvGl 168 (646)
++|.|+ |=-|||||+..++..|. ..|+||-+
T Consensus 3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 455554 67789999999999999 55689865
No 190
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=33.51 E-value=47 Score=35.85 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=29.8
Q ss_pred CccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 136 ELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 136 ~l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
+-++|+|-|| -||=||+..|...|++.|+++++..|-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 4478999998 599999999999999999999887653
No 191
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.39 E-value=51 Score=36.94 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=29.8
Q ss_pred CccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 136 ELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 136 ~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+-++|.++| -.|||||++-++..+...|++|++++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 346788888 458999999999988888999998775
No 192
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=33.00 E-value=65 Score=31.21 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=26.0
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEE
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl 168 (646)
.+|.++| -.||||++..+...|...|..+.+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~ 51 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYV 51 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 6899999 789999999999999887765533
No 193
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=32.75 E-value=59 Score=34.89 Aligned_cols=48 Identities=27% Similarity=0.448 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCcccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 122 SMYLKILGLEDRIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 122 ~~~L~~Lg~~~p~~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
++=++.+|. +.+.+|-|||-. ==+-=.++|..+|.++|||||++.-|-
T Consensus 6 ~~em~~rGW----d~lDvilVtGDAYVDHPsFG~AiIgR~Le~~GyrVgIiaQPd 56 (302)
T PF08497_consen 6 REEMKARGW----DELDVILVTGDAYVDHPSFGAAIIGRVLEAHGYRVGIIAQPD 56 (302)
T ss_pred HHHHHHcCC----ccccEEEEeCcccccCcchhHHHHHHHHHHcCCeEEEEeCCC
Confidence 455667887 456799999942 112227899999999999999998886
No 194
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=31.39 E-value=1.4e+02 Score=28.85 Aligned_cols=78 Identities=13% Similarity=0.296 Sum_probs=47.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEE--EecCC
Q 006403 415 IFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILL--FNCME 492 (646)
Q Consensus 415 ~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv--Fg~~~ 492 (646)
.+=+|+++.+.......++++..... + +... ++|.++. |....
T Consensus 18 L~~i~~~~~~k~~a~~~E~~~~l~~~---------------------l-------------Erqf-KGRv~l~P~~~Y~~ 62 (142)
T PF10673_consen 18 LIPIDFGEDMKEAASQGEFLRLLADE---------------------L-------------ERQF-KGRVLLFPAFTYLK 62 (142)
T ss_pred ccccCccccHHHHHHHHHHHHHHHHH---------------------H-------------HHhc-CceEEecCCeeeec
Confidence 45688999999988888888766422 1 0111 2344333 33445
Q ss_pred CCChhhhHHHHHHHhhhc-CCCccEEEEeCCCCccc
Q 006403 493 ARHPQVLLPRLVSTCASS-GTHFSKALFVPSVSTYS 527 (646)
Q Consensus 493 dRd~~~ll~~L~~~~~~~-~~~fd~~if~~~~~~~~ 527 (646)
..+...+...|.+-+... ..+|.|++|+|.++.|+
T Consensus 63 ~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 63 EEDEEELVERLNDWCEELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcccc
Confidence 566665544454433221 23599999999998887
No 195
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=31.29 E-value=2.2e+02 Score=33.42 Aligned_cols=86 Identities=13% Similarity=0.216 Sum_probs=45.7
Q ss_pred CcEEEEeeccCCCcccccccc--------CCcEEEEc-cC----------------------CcchhhhcCCCHHHHHHH
Q 006403 234 VDVAIIEVGLGGEKDSTNVIK--------EPVVCGVT-SL----------------------GMDHMELLGNTLNDIAFH 282 (646)
Q Consensus 234 vD~aVlEvG~GGr~D~TNvi~--------~P~VaVIT-nI----------------------g~DHld~LG~TleeIA~~ 282 (646)
.||+|-|.|-|-.+-+-.+++ +|+++|+. +| ..+-++.+..-++++.+|
T Consensus 314 adyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~H 393 (587)
T PRK13507 314 ADYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKMHGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHH 393 (587)
T ss_pred CCeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHHcCCCCccccCCccchhccccCHHHHHHHHHHHHHH
Confidence 499999999984333322221 57665543 22 122222222223444444
Q ss_pred HhcccCCCCcEEEeC-----CchHHHHHHHHHHHhcCccEEE
Q 006403 283 KAGIFKPQIPAFTVP-----QLSEAMSVLQDRALELMVPLEV 319 (646)
Q Consensus 283 KagIfk~g~~av~~~-----q~~~~~~vl~~~a~~~~~~l~~ 319 (646)
-..+=+-|.|+|+.. |.++-.+.+++.|.+.|++..+
T Consensus 394 i~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v 435 (587)
T PRK13507 394 IGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAV 435 (587)
T ss_pred HHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444445677776532 3333356677788777776554
No 196
>PRK06835 DNA replication protein DnaC; Validated
Probab=31.20 E-value=41 Score=36.61 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=27.3
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 135 AELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 135 ~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
..+-+.|=+|| |||..+..++.-|...|++|..++.+-
T Consensus 184 ~~Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGT-GKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCC-cHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 44455565666 999999888888888898886655443
No 197
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=31.17 E-value=27 Score=35.56 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=30.7
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
..|.+-|- .||||.+.++...|++.|++|-+..-|.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 46777775 5899999999999999999987777776
No 198
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=30.56 E-value=46 Score=35.33 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.6
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTG----TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.|-||| .=|||-|++-+..+|++.|++|...
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~ 37 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI 37 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee
Confidence 5677787 4699999999999999999998653
No 199
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.78 E-value=59 Score=36.81 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=26.5
Q ss_pred cEEEEecCC--CCchHHHHHHHHH-HHCCCCeEEEcC
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAIL-RECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL-~~~G~kvGl~TS 171 (646)
.+|.|.|-+ |||||++-++.-+ ...|.+|++++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 577788764 7999999998754 567999988764
No 200
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=29.35 E-value=1.8e+02 Score=33.59 Aligned_cols=53 Identities=26% Similarity=0.491 Sum_probs=40.9
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhh
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLR 205 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~ 205 (646)
-+|.+-| +.|||++..-|..-|...|++|-.|+.|. +++.--.++|..|..|-
T Consensus 41 vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~---------------~eE~~~~flwRfw~~lP 95 (493)
T TIGR03708 41 VIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS---------------DEERERPPMWRFWRRLP 95 (493)
T ss_pred EEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC---------------HHHhcCcHHHHHHHhCC
Confidence 4677777 68999999999999999999998888775 33333346788887763
No 201
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=29.28 E-value=74 Score=30.85 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=26.4
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl 168 (646)
.+|.|.|.- ||||.+..|+.-|...|+++-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 578888864 8999999999999999988743
No 202
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=28.87 E-value=54 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=21.7
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+|+|+|- .||||++..+..+| .+.++.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 4777775 48999999999998 344555443
No 203
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=28.56 E-value=89 Score=36.12 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=28.6
Q ss_pred ccEEEEec------CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 137 LKVIHVSG------TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 137 l~vIhVTG------TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
-++|.||. --|||||+.=++..|.+.|.|+.+.
T Consensus 38 ~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~ 76 (524)
T cd00477 38 GKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC 76 (524)
T ss_pred CeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 47899999 3489999999999999999998653
No 204
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=28.19 E-value=2e+02 Score=33.38 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=49.3
Q ss_pred CcEEEEeeccCCCcccccccc--------CCcEEEEcc-C--------------C-cchhhhcCCCHHHHHHHHhcccCC
Q 006403 234 VDVAIIEVGLGGEKDSTNVIK--------EPVVCGVTS-L--------------G-MDHMELLGNTLNDIAFHKAGIFKP 289 (646)
Q Consensus 234 vD~aVlEvG~GGr~D~TNvi~--------~P~VaVITn-I--------------g-~DHld~LG~TleeIA~~KagIfk~ 289 (646)
.||+|-|.|-|-.+-+-.+++ +|+++|+.. | + .+-++.+..-++++.+|-..+=+-
T Consensus 276 aDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~l~~~en~~al~~G~~NL~~Hi~n~~~f 355 (524)
T cd00477 276 ADYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKVTLGLEENLEALEKGFANLRKHIENIKKF 355 (524)
T ss_pred cCeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcccCCCccCHHHHHhHHHHHHHHHHHHHHc
Confidence 599999999994433322221 577765532 2 1 223333333345555555445456
Q ss_pred CCcEEEeC-----CchHHHHHHHHHHHhcCccEEEe
Q 006403 290 QIPAFTVP-----QLSEAMSVLQDRALELMVPLEVA 320 (646)
Q Consensus 290 g~~av~~~-----q~~~~~~vl~~~a~~~~~~l~~~ 320 (646)
|.|+|+.. |.++-.+.+++.|++.|++....
T Consensus 356 g~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~ 391 (524)
T cd00477 356 GVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVS 391 (524)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 77776542 33344567788888888766543
No 205
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.17 E-value=1.1e+02 Score=37.23 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=26.3
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH-HCC-CCeEEEcC
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR-ECG-FRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~-~~G-~kvGl~TS 171 (646)
.+|.+.|-| |||||.+.|+..+. ..| .+|++.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~ 223 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT 223 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC
Confidence 577777776 69999999998884 566 58888664
No 206
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=27.84 E-value=80 Score=31.52 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.2
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCC--CCeEE
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECG--FRTGL 168 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G--~kvGl 168 (646)
-.|||==-+|||.|++-+-..||++| +||.+
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~i 54 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLI 54 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 47888767999999999999999975 67755
No 207
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=27.75 E-value=46 Score=33.47 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.6
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kv 166 (646)
.+|=.||= .||||.+..++..|.+.|+++
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 47888875 589999999999999999987
No 208
>PLN02924 thymidylate kinase
Probab=27.64 E-value=86 Score=31.98 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.6
Q ss_pred cccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 006403 133 RIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 133 p~~~l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl 168 (646)
|..+-.+|.|-|- .||||-+.+|+.-|+..|+++-+
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~ 49 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAEL 49 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCcee
Confidence 4444568999986 68999999999999999998743
No 209
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=27.57 E-value=2.3e+02 Score=33.17 Aligned_cols=86 Identities=16% Similarity=0.325 Sum_probs=47.0
Q ss_pred CcEEEEeeccCCCcccccccc--------CCcEEEEcc-CCcchhhhcCC----------------CHHHHHHHHhcccC
Q 006403 234 VDVAIIEVGLGGEKDSTNVIK--------EPVVCGVTS-LGMDHMELLGN----------------TLNDIAFHKAGIFK 288 (646)
Q Consensus 234 vD~aVlEvG~GGr~D~TNvi~--------~P~VaVITn-Ig~DHld~LG~----------------TleeIA~~KagIfk 288 (646)
.||+|-|.|-|-.+-+-.+++ +|+++|+.. |. -+-+||. -+.++.++-.-+=+
T Consensus 293 adyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvr--aLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~ 370 (557)
T PRK13505 293 ADYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVR--ALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRK 370 (557)
T ss_pred CCEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehH--HHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 499999999994443332221 577665432 21 1333331 22333333333323
Q ss_pred CCCcEEE--eC---CchHHHHHHHHHHHhcCccEEEec
Q 006403 289 PQIPAFT--VP---QLSEAMSVLQDRALELMVPLEVAA 321 (646)
Q Consensus 289 ~g~~av~--~~---q~~~~~~vl~~~a~~~~~~l~~~~ 321 (646)
-|.|+|+ |. |.++-.+.+++.|.+.|+++....
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~ 408 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSE 408 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4667654 32 333345678899999898876543
No 210
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=27.50 E-value=79 Score=33.26 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=25.6
Q ss_pred EEEEec----CCCCchHHHHHHHHHHHCCCCeEE
Q 006403 139 VIHVSG----TKGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 139 vIhVTG----TnGKgST~a~l~sIL~~~G~kvGl 168 (646)
.|-||| .=|||-|++-+..+|++.|++|-.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 35 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTA 35 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEE
Confidence 466666 469999999999999999999854
No 211
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=27.43 E-value=52 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=25.8
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+|.++|- .||||++..+...|.+.|.++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~ 36 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAA 36 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 4555554 47999999999999999999877654
No 212
>PRK07933 thymidylate kinase; Validated
Probab=26.69 E-value=83 Score=31.79 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=28.2
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
+|.|-|. .||||.+..|..-|+..|++|.+..-|
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4666664 589999999999999999999876655
No 213
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=26.18 E-value=77 Score=32.79 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=18.7
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCC
Q 006403 139 VIHVSGTKGKGSTCTFCEAILRECG 163 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~G 163 (646)
+.|=.|| ||||++..++..|...|
T Consensus 47 l~GppGt-GKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 47 FKGNPGT-GKTTVARILGKLFKEMN 70 (261)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHhcC
Confidence 3455555 99999999999997655
No 214
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=26.07 E-value=1.3e+02 Score=32.83 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCcccCccEEEEec--CCCCchHHHHHHHHHHHCCCCe
Q 006403 122 SMYLKILGLEDRIAELKVIHVSG--TKGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 122 ~~~L~~Lg~~~p~~~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kv 166 (646)
..+|+.++..+. .+.|.+-|-| .|||||.|..+.+-.-..|++.
T Consensus 85 hf~lek~rm~n~-e~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~p 130 (424)
T COG5623 85 HFFLEKRRMFNY-EKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKP 130 (424)
T ss_pred HHHHHhhccccc-ccCCEEEEECCCcCCceeHHHHHHHHHHHhcCCc
Confidence 344444442222 2456666666 6999999998877666667765
No 215
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=25.98 E-value=81 Score=36.24 Aligned_cols=32 Identities=31% Similarity=0.491 Sum_probs=27.1
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTG----TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.|-||| +=|||-|++-|..+|++.|++|-..
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~ 37 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ 37 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEE
Confidence 4577776 6799999999999999999998654
No 216
>PRK08181 transposase; Validated
Probab=25.86 E-value=48 Score=35.04 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=27.4
Q ss_pred ccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 134 IAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 134 ~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
..++-++|=+|| |||-.+.-+..-+.+.|++|.+++.+
T Consensus 106 ~~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 106 GANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred CceEEEEecCCC-cHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 344556666776 99988888887777789988655543
No 217
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=25.72 E-value=92 Score=34.56 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.3
Q ss_pred cEEEEecCC-CCchHHHHHHHHHHHCCCCe
Q 006403 138 KVIHVSGTK-GKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 138 ~vIhVTGTn-GKgST~a~l~sIL~~~G~kv 166 (646)
+++-|-+|+ ||||.|.+|-+-.-..|++.
T Consensus 105 rv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 105 RVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred EEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 567777788 99999999888766668764
No 218
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=25.66 E-value=98 Score=30.22 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=24.8
Q ss_pred EEEEecCCCCchHHHHHHHHHHHC--CCCeEE
Q 006403 139 VIHVSGTKGKGSTCTFCEAILREC--GFRTGL 168 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~--G~kvGl 168 (646)
.|||=+-+|||.|++.+...++++ |++|.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 688877779999999999999986 566654
No 219
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=25.46 E-value=36 Score=36.23 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=27.9
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHH
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDK 192 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~ 192 (646)
++.+-|+ .|||||-.||..++... |- .|.|||++|++.+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept--------~G-------~I~i~g~~i~~~d 69 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT--------SG-------EILIDGEDISDLD 69 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC--------Cc-------eEEECCeecccCC
Confidence 4444555 47999999999888742 22 2899999998753
No 220
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.16 E-value=91 Score=30.36 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.7
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
-+|-+||.. ||||.+..++.-|.+.|.++-+.-
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 478888874 799999999999999999886543
No 221
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=24.95 E-value=83 Score=25.72 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=21.9
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 139 VIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+|.|+|-. ||||.+..++..| .|.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 35667654 7888899889888 5667665543
No 222
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=24.86 E-value=36 Score=35.97 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=30.3
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDK 192 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~ 192 (646)
.+.+.-|-| |||||-+||-.+|.. ++-+ |.++|.+++...
T Consensus 29 ~i~GllG~NGAGKTTtfRmILglle~--------~~G~-------I~~~g~~~~~~~ 70 (300)
T COG4152 29 EIFGLLGPNGAGKTTTFRMILGLLEP--------TEGE-------ITWNGGPLSQEI 70 (300)
T ss_pred eEEEeecCCCCCccchHHHHhccCCc--------cCce-------EEEcCcchhhhh
Confidence 577888877 599999999888875 1222 889999998764
No 223
>PRK08233 hypothetical protein; Provisional
Probab=24.81 E-value=48 Score=31.58 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.6
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR 160 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~ 160 (646)
.+|+|+|.. ||||.+..|...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999875 68899988887764
No 224
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.56 E-value=1e+02 Score=30.59 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=24.7
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHC--CCCeEE
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILREC--GFRTGL 168 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~--G~kvGl 168 (646)
-.|||=+-+|||.|++.+...++++ |++|.+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~i 38 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGV 38 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 3677777799999999999999986 466643
No 225
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=23.83 E-value=1e+02 Score=31.21 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=25.8
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHH
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFL 194 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~ 194 (646)
--++|+-|-||-|..+- +++ -+|.-. +.-.|+++|.+++.-...
T Consensus 25 Ge~~HliGPNGaGKSTL-LA~---lAGm~~----------~sGsi~~~G~~l~~~~~~ 68 (248)
T COG4138 25 GEILHLVGPNGAGKSTL-LAR---MAGMTS----------GSGSIQFAGQPLEAWSAT 68 (248)
T ss_pred ceEEEEECCCCccHHHH-HHH---HhCCCC----------CCceEEECCcchhHHhHh
Confidence 36899999997654331 221 123311 122389999999765443
No 226
>PLN02759 Formate--tetrahydrofolate ligase
Probab=23.51 E-value=4e+02 Score=31.69 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHCCCCeEEEcCCcccccccee-------EECCEecCHHHH
Q 006403 150 STCTFCEAILRECGFRTGLFTSPHLIDVRERF-------RINGLDITEDKF 193 (646)
Q Consensus 150 ST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI-------~InG~~Is~~~f 193 (646)
|++.=+-+||--+ -.|.+.+||+ ..+|+||.-+++
T Consensus 265 TvASEiMAILcLa---------~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL 306 (637)
T PLN02759 265 TVASEIMAVLALT---------TSLADMRERLGKMVIGNSKAGEPVTADDL 306 (637)
T ss_pred eHHHHHHHHHHHc---------CCHHHHHHHHhCEEEEEcCCCCceeHHHc
Confidence 6666666777432 2355666764 347999987765
No 227
>PRK13695 putative NTPase; Provisional
Probab=23.45 E-value=91 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEecCC--CCchHHHHHHHHHHHCCCCeE
Q 006403 140 IHVSGTK--GKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 140 IhVTGTn--GKgST~a~l~sIL~~~G~kvG 167 (646)
|+|||.+ ||||...++..-|+..|++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 6788776 688888888777877787754
No 228
>PRK10536 hypothetical protein; Provisional
Probab=23.37 E-value=1.2e+02 Score=32.03 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=36.7
Q ss_pred cEEEEecCC--CCchHHHHHHH-HHHHCCCCeEEEcCCccccccceeEE-CCEecCHHHHHHHHHHHHHHhhh
Q 006403 138 KVIHVSGTK--GKGSTCTFCEA-ILRECGFRTGLFTSPHLIDVRERFRI-NGLDITEDKFLFYFWECWHLLRE 206 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~s-IL~~~G~kvGl~TSPhL~~~~ERI~I-nG~~Is~~~f~~~f~~v~~~l~~ 206 (646)
.+|-++|-- |||..+..+.. .|....++..+++-|.+.. .|.+.. .|. -++.+..|+.-+++.|..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~-ge~LGfLPG~--~~eK~~p~~~pi~D~L~~ 144 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA-DEDLGFLPGD--IAEKFAPYFRPVYDVLVR 144 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc-hhhhCcCCCC--HHHHHHHHHHHHHHHHHH
Confidence 355555554 56666654444 3434557778888887532 333321 121 135667777777776654
No 229
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=23.32 E-value=4e+02 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=18.0
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHhhh
Q 006403 414 LIFYLDGAHTAESMEACAKWFSSVV 438 (646)
Q Consensus 414 ~~vilDgAHNp~sl~a~l~~~~~~~ 438 (646)
+.+.++|-=|++.++.....+.+..
T Consensus 3 l~v~~~g~~t~ed~~~~~~~~~~~~ 27 (109)
T PF11964_consen 3 LAVRVSGKLTEEDYKELLPALEELI 27 (109)
T ss_dssp EEEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeCHHHHHHHHHHHHHHH
Confidence 3466778778999999888777664
No 230
>CHL00181 cbbX CbbX; Provisional
Probab=23.30 E-value=83 Score=33.42 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=26.3
Q ss_pred HHHHhCCCCcccCcc--EEEEecCCCCchHHHHHHHHHHHCCC
Q 006403 124 YLKILGLEDRIAELK--VIHVSGTKGKGSTCTFCEAILRECGF 164 (646)
Q Consensus 124 ~L~~Lg~~~p~~~l~--vIhVTGTnGKgST~a~l~sIL~~~G~ 164 (646)
..+.+|+..|...++ ++|=+|| |||+++..++.++...|+
T Consensus 47 ~~~~~g~~~~~~~~~ill~G~pGt-GKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 47 LRKNLGLTSSNPGLHMSFTGSPGT-GKTTVALKMADILYKLGY 88 (287)
T ss_pred HHHHcCCCCCCCCceEEEECCCCC-CHHHHHHHHHHHHHHcCC
Confidence 334567643333333 3444555 999999999999987765
No 231
>PRK01254 hypothetical protein; Provisional
Probab=23.24 E-value=74 Score=38.02 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHhCCCCcccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCCcccc
Q 006403 117 KLQRMSMYLKILGLEDRIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSPHLID 176 (646)
Q Consensus 117 ~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~TSPhL~~ 176 (646)
=|+-.++-++.+|. +.+.+|-|||=. ==+-=.+.|..+|.++|||||++.-|--.+
T Consensus 24 fLP~t~~em~~~Gw----d~~DiilVtGDAYVDHPsFG~AiigR~Le~~G~rVgIiaQPdw~~ 82 (707)
T PRK01254 24 FLPMSREEMDQLGW----DSCDIIIVTGDAYVDHPSFGMAIIGRMLEAQGFRVGIIAQPDWSS 82 (707)
T ss_pred cCCCCHHHHHHcCC----CccCEEEEeCcccccCccchHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 35666777788997 456899999942 112227899999999999999999886433
No 232
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=23.03 E-value=1e+02 Score=35.93 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHhCCCCcccCccEEEEecCC------CCchHHHHHHHHHHHCCCCeE
Q 006403 124 YLKILGLEDRIAELKVIHVSGTK------GKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 124 ~L~~Lg~~~p~~~l~vIhVTGTn------GKgST~a~l~sIL~~~G~kvG 167 (646)
+|+++. ...+-+.|-||+.| |||||+-=|.+.|...|+++.
T Consensus 44 ~~~~~~---~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 44 VLERLK---DKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp HHHHTT---TS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred HHhhcc---ccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 455554 12244789999987 999999999999999999864
No 233
>PRK00889 adenylylsulfate kinase; Provisional
Probab=22.92 E-value=1.2e+02 Score=29.05 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=25.4
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl 168 (646)
.+|.++|. .||||++..++..|...|.++-+
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~ 37 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEV 37 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 58888885 57999999999999988876643
No 234
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=22.78 E-value=50 Score=34.11 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.6
Q ss_pred EEEecCCCCchHHHHHHHHHHHCCCCeEE
Q 006403 140 IHVSGTKGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 140 IhVTGTnGKgST~a~l~sIL~~~G~kvGl 168 (646)
||=+| .||||-|+-+.+.+...|.++.+
T Consensus 2 iGpaG-SGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 2 IGPAG-SGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp EESTT-SSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCCCC-CCHHHHHHHHHHHHHhccCCceE
Confidence 34444 49999999999999999987744
No 235
>PRK05480 uridine/cytidine kinase; Provisional
Probab=22.71 E-value=1e+02 Score=30.53 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.8
Q ss_pred CccEEEEecC--CCCchHHHHHHHHH
Q 006403 136 ELKVIHVSGT--KGKGSTCTFCEAIL 159 (646)
Q Consensus 136 ~l~vIhVTGT--nGKgST~a~l~sIL 159 (646)
+..+|+|+|- .||||++..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999987 48999999998887
No 236
>PRK00698 tmk thymidylate kinase; Validated
Probab=22.51 E-value=1.2e+02 Score=29.54 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.3
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl 168 (646)
.+|.|.|- .||||.+..|+.-|...|+.+-+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 57888885 68999999999999988866543
No 237
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.35 E-value=1.1e+02 Score=30.74 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.2
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCC--CCeEE
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECG--FRTGL 168 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G--~kvGl 168 (646)
-.|+|=+-+|||.|++.+...++++| ++|.+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~i 55 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGV 55 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 47999999999999999999999864 56543
No 238
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=22.25 E-value=5.3e+02 Score=28.81 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHhCCCCcccCccEEEEecCCCCch-HHHHHHHHHHHCCCCeEEEc
Q 006403 116 GKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGS-TCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 116 ~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgS-T~a~l~sIL~~~G~kvGl~T 170 (646)
..++++.++++++|.. +++-|||.+=+.+ ...-+...|+..|..+..|.
T Consensus 9 g~~~~l~~~l~~~g~~------~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~ 58 (414)
T cd08190 9 GVTAEVGMDLKNLGAR------RVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYD 58 (414)
T ss_pred CHHHHHHHHHHHcCCC------eEEEEECcchhhcchHHHHHHHHHHcCCcEEEeC
Confidence 4577787888888742 6777887554433 34556667788888776664
No 239
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=22.06 E-value=2.9e+02 Score=28.61 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=39.5
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHh
Q 006403 138 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLL 204 (646)
Q Consensus 138 ~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l 204 (646)
-+|-+.| +.|||.+..-|..-|.-.|++|-.|..|. +++.--.++|..|..|
T Consensus 32 vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt---------------~eE~~~p~lwRfw~~l 85 (230)
T TIGR03707 32 VVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPS---------------DRERTQWYFQRYVQHL 85 (230)
T ss_pred EEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC---------------HHHHcChHHHHHHHhC
Confidence 3566666 78999999999999999999998887775 3333334677788766
No 240
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=21.99 E-value=4.8e+02 Score=27.39 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.0
Q ss_pred EEEEee-ccCCCccccccccCCcEEEEccCCcchhhh
Q 006403 236 VAIIEV-GLGGEKDSTNVIKEPVVCGVTSLGMDHMEL 271 (646)
Q Consensus 236 ~aVlEv-G~GGr~D~TNvi~~P~VaVITnIg~DHld~ 271 (646)
++++|+ -+|+-++. +...|.+.++|+=..|+..|
T Consensus 152 v~~veaC~SGs~~~~--L~~~~nv~~iTAa~~~e~Sy 186 (256)
T PF01650_consen 152 VFVVEACYSGSFFEG--LLKSPNVYVITAANADESSY 186 (256)
T ss_pred EEEEecccccchhhc--cCCCCCEEEEecCCcccccc
Confidence 888998 45556666 34468999999999998876
No 241
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.79 E-value=81 Score=36.75 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=24.9
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITED 191 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~ 191 (646)
.-|+|.|.||=|-. .++..+|+=..+ .-+|+|||+.|.+-
T Consensus 379 ekVaIvG~nGsGKS-Tilr~LlrF~d~-------------sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKS-TILRLLLRFFDY-------------SGSILIDGQDIKEV 418 (591)
T ss_pred CEEEEECCCCCCHH-HHHHHHHHHhcc-------------CCcEEECCeeHhhh
Confidence 46899999974432 244455553322 12399999998653
No 242
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=21.48 E-value=60 Score=33.44 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=17.4
Q ss_pred cCccEEEEecCCCCchHHH-HHHHHHHHCC
Q 006403 135 AELKVIHVSGTKGKGSTCT-FCEAILRECG 163 (646)
Q Consensus 135 ~~l~vIhVTGTnGKgST~a-~l~sIL~~~G 163 (646)
..+.|.+.+|| |||||.. -+..+|...+
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~ 42 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGG 42 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSS
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhcccc
Confidence 34568888887 8888653 3455565554
No 243
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=21.45 E-value=1.1e+02 Score=35.65 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=27.4
Q ss_pred cEEEEecC----CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT----KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT----nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.|-|||. =|||.|++-+..+|++.|++|...
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~ 37 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTII 37 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEE
Confidence 56778874 699999999999999999998654
No 244
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=21.20 E-value=51 Score=32.89 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=21.2
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
++|.|||- -||||++.++...| .+++..-|+
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l--~~~~ivNyG 37 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKEL--VKHKIVNYG 37 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHH--hhceeeeHh
Confidence 56666664 47999999999888 344443343
No 245
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=21.20 E-value=1.3e+02 Score=35.15 Aligned_cols=41 Identities=24% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHhCCCCcccCccEEEEecCC------CCchHHHHHHHHHHHCCCCeE
Q 006403 124 YLKILGLEDRIAELKVIHVSGTK------GKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 124 ~L~~Lg~~~p~~~l~vIhVTGTn------GKgST~a~l~sIL~~~G~kvG 167 (646)
+++++.. .| +-+.|-||+.| |||||+-=|.+.|.+.|+++.
T Consensus 53 ~l~~~~~-~~--~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 53 VLDRLKD-RP--DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred HHHhhcc-CC--CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 4555542 22 33789999987 999999999999999998864
No 246
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=21.14 E-value=1.4e+02 Score=29.30 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=41.4
Q ss_pred cCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeE
Q 006403 114 RYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 114 ~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvG 167 (646)
+..+++++-++.+++|| +-|+|+---|=--=+..++.||++.|+.|-
T Consensus 39 ~~tRveEiieFak~mgy-------kkiGiAfCiGL~~EA~~~~~iL~~~gFev~ 85 (157)
T PF08901_consen 39 KLTRVEEIIEFAKRMGY-------KKIGIAFCIGLRKEARILAKILEANGFEVY 85 (157)
T ss_pred ccchHHHHHHHHHHcCC-------CeeeehhhHhHHHHHHHHHHHHHHCCCEEE
Confidence 34689999999999998 679999999988999999999999999763
No 247
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=21.12 E-value=5.1e+02 Score=31.20 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.4
Q ss_pred EEEEecCC--CCchHHHHHHHHH
Q 006403 139 VIHVSGTK--GKGSTCTFCEAIL 159 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL 159 (646)
+|+|+|+. ||||++..|+..|
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999986 6999999999887
No 248
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=21.03 E-value=1.2e+02 Score=35.52 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.9
Q ss_pred ccEEEEec------CCCCchHHHHHHHHHHHCCCCe
Q 006403 137 LKVIHVSG------TKGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 137 l~vIhVTG------TnGKgST~a~l~sIL~~~G~kv 166 (646)
-++|.||. --|||||+.=++..|.+.|.++
T Consensus 54 ~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 54 GKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 48999999 3489999999999999999986
No 249
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=20.84 E-value=1.7e+02 Score=33.30 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=46.9
Q ss_pred hhhhhhhHHHHhccccccccchhhcCCCCC--CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcc
Q 006403 57 LRYAKMSSQVKGKTVSNALTTEYEENLPLS--SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRI 134 (646)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~ 134 (646)
+--|++.+|++|.++..++- |||...+ |=-++-++. |.+..+- ++ .+=+++++.+-+.+|.
T Consensus 327 TSqAAnI~EAlE~Ga~~LLi---DEDtsATNfmiRD~rMq~---Lv~k~kE----PI---TPfidrvr~l~~~~Gv---- 389 (448)
T PF09818_consen 327 TSQAANIMEALEAGARLLLI---DEDTSATNFMIRDERMQA---LVSKEKE----PI---TPFIDRVRSLYEKLGV---- 389 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEE---cCcccchheeehhHHHHH---hhccCCC----Cc---chHHHHHHHHHHHcCc----
Confidence 34678899999999999998 7766632 212333333 3332111 11 2567888888888884
Q ss_pred cCccEEEEecCCC
Q 006403 135 AELKVIHVSGTKG 147 (646)
Q Consensus 135 ~~l~vIhVTGTnG 147 (646)
.+|-|+|..|
T Consensus 390 ---StIlV~Ggsg 399 (448)
T PF09818_consen 390 ---STILVVGGSG 399 (448)
T ss_pred ---eEEEEeccch
Confidence 6899999877
No 250
>PRK05380 pyrG CTP synthetase; Validated
Probab=20.75 E-value=1.1e+02 Score=35.57 Aligned_cols=32 Identities=31% Similarity=0.491 Sum_probs=27.8
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTG----TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.|-||| +=|||-|++-+..+|++.|++|-..
T Consensus 3 k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~ 38 (533)
T PRK05380 3 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ 38 (533)
T ss_pred eEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEE
Confidence 6788887 5699999999999999999998643
No 251
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=20.38 E-value=51 Score=34.80 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.3
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCC
Q 006403 139 VIHVSGTK--GKGSTCTFCEAILRECG 163 (646)
Q Consensus 139 vIhVTGTn--GKgST~a~l~sIL~~~G 163 (646)
+|+|+|.+ ||||.+..|..+|...|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 47888876 69999999999987654
No 252
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=20.33 E-value=1e+02 Score=33.90 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=28.5
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
-+|+|+|- .||||.+..+-..|+.. ++|+++..
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 58999995 47999999999999998 99999874
No 253
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=20.29 E-value=4e+02 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=18.4
Q ss_pred CccceeeCCHHHHHHHHHhhhh
Q 006403 598 FACSAVIPSLPLTIKWLRDSVQ 619 (646)
Q Consensus 598 ~~~~~v~~si~~ai~~~r~~~~ 619 (646)
...+.+.+||++|++++.+..+
T Consensus 81 l~~v~~~~sle~a~~~I~~~~G 102 (185)
T PF09936_consen 81 LSLVRVVDSLEEAIEDIEEEEG 102 (185)
T ss_dssp HTTEEEESSHHHHHHHHHHHHS
T ss_pred HhHhccHhhHHHHHHHHHHHhC
Confidence 3478999999999999987654
No 254
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=20.27 E-value=1.3e+02 Score=37.30 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=25.6
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEE
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl 168 (646)
-|.|.-|| |||||-..+=.||-..|.+|-+
T Consensus 689 LI~GMPGT-GKTTtI~~LIkiL~~~gkkVLL 718 (1100)
T KOG1805|consen 689 LILGMPGT-GKTTTISLLIKILVALGKKVLL 718 (1100)
T ss_pred eeecCCCC-CchhhHHHHHHHHHHcCCeEEE
Confidence 36677787 9999999999999999999843
No 255
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=20.27 E-value=74 Score=30.91 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=18.2
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kv 166 (646)
+|+|||. .||||.+.+++. .|+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~ 26 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPV 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCE
Confidence 4889986 578888888776 57654
No 256
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=20.17 E-value=3.6e+02 Score=28.58 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=38.5
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHh
Q 006403 139 VIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLL 204 (646)
Q Consensus 139 vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l 204 (646)
+|-+.| +.|||.+..-|..-|.-.|++|-.|..|. +++.--.++|..|..|
T Consensus 58 lIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt---------------~eE~~~p~lWRfw~~l 110 (264)
T TIGR03709 58 LLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPS---------------AEELDHDFLWRIHKAL 110 (264)
T ss_pred EEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC---------------HHHHcCchHHHHHHhC
Confidence 566666 78999999999999999999998887665 3333334677777766
No 257
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=20.13 E-value=84 Score=39.32 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.0
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVSGTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.|-+|| ||||+...+..++++.|++|-..
T Consensus 367 v~G~AGT-GKTT~l~~~~~~~e~~G~~V~~~ 396 (988)
T PRK13889 367 VVGYAGT-GKSAMLGVAREAWEAAGYEVRGA 396 (988)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHcCCeEEEe
Confidence 5556665 89999998989999999988654
No 258
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=20.08 E-value=72 Score=32.29 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=19.4
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 006403 137 LKVIHVSGT--KGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 137 l~vIhVTGT--nGKgST~a~l~sIL~~~G~kv 166 (646)
..+|+|||. .||||++.+++ +.|+++
T Consensus 2 ~~iIglTG~igsGKStva~~~~----~~G~~v 29 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILA----ELGFPV 29 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHH----HcCCeE
Confidence 368999996 68888877555 567765
No 259
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=20.07 E-value=91 Score=31.25 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=18.2
Q ss_pred EEEEecCCCCchHHH-HHHHHHHHCCCCeEEE
Q 006403 139 VIHVSGTKGKGSTCT-FCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVTGTnGKgST~a-~l~sIL~~~G~kvGl~ 169 (646)
|+|-||| |||.|.+ +++++++..|.++-+|
T Consensus 28 I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ii~ 58 (229)
T PF01935_consen 28 IFGTTGS-GKSNTVKVLLEELLKKKGAKVIIF 58 (229)
T ss_pred EECCCCC-CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5555554 7877665 5556664667766543
Done!