Query 006403
Match_columns 646
No_of_seqs 438 out of 2864
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 00:08:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 6.1E-72 2.1E-76 614.1 42.9 401 85-645 12-436 (437)
2 2vos_A Folylpolyglutamate synt 100.0 4E-71 1.4E-75 615.5 44.0 415 88-646 26-484 (487)
3 1jbw_A Folylpolyglutamate synt 100.0 3.6E-68 1.2E-72 581.8 44.1 404 87-645 1-424 (428)
4 1o5z_A Folylpolyglutamate synt 100.0 1.7E-68 5.9E-73 587.4 41.1 400 86-645 12-432 (442)
5 1w78_A FOLC bifunctional prote 100.0 1.6E-64 5.4E-69 551.8 44.9 394 86-645 10-415 (422)
6 1e8c_A UDP-N-acetylmuramoylala 100.0 8.8E-52 3E-56 460.8 32.5 355 25-523 21-414 (498)
7 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 7.6E-51 2.6E-55 457.2 34.3 413 25-640 62-510 (535)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 3.6E-47 1.2E-51 418.8 27.2 335 24-522 23-392 (452)
9 2am1_A SP protein, UDP-N-acety 100.0 8.3E-47 2.8E-51 415.8 22.8 335 24-523 25-389 (454)
10 1p3d_A UDP-N-acetylmuramate--a 100.0 8.6E-42 2.9E-46 378.1 30.4 323 137-642 118-470 (475)
11 2f00_A UDP-N-acetylmuramate--L 100.0 1.8E-41 6.3E-46 377.0 25.9 341 118-643 106-477 (491)
12 1j6u_A UDP-N-acetylmuramate-al 100.0 1.1E-40 3.7E-45 369.2 28.9 256 136-523 113-388 (469)
13 2x5o_A UDP-N-acetylmuramoylala 100.0 3.3E-41 1.1E-45 370.0 23.9 210 137-434 104-333 (439)
14 4hv4_A UDP-N-acetylmuramate--L 100.0 5.7E-38 2E-42 349.5 31.5 326 138-641 123-478 (494)
15 3lk7_A UDP-N-acetylmuramoylala 100.0 5.4E-37 1.8E-41 337.7 29.5 210 137-432 112-342 (451)
16 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.3E-36 4.5E-41 340.8 32.7 336 136-641 121-513 (524)
17 3eag_A UDP-N-acetylmuramate:L- 99.9 8.5E-27 2.9E-31 246.3 15.7 193 136-390 107-326 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.3 4.7E-12 1.6E-16 120.8 12.4 88 375-521 11-100 (163)
19 2obn_A Hypothetical protein; s 91.4 0.55 1.9E-05 49.9 9.1 36 137-172 152-190 (349)
20 1byi_A Dethiobiotin synthase; 89.5 0.24 8.3E-06 47.6 4.0 32 138-169 2-36 (224)
21 3bfv_A CAPA1, CAPB2, membrane 87.8 0.54 1.8E-05 47.6 5.4 35 135-169 80-117 (271)
22 3of5_A Dethiobiotin synthetase 87.5 0.44 1.5E-05 47.2 4.4 36 135-170 2-40 (228)
23 3fwy_A Light-independent proto 87.1 0.44 1.5E-05 49.6 4.4 35 135-169 46-82 (314)
24 3dm5_A SRP54, signal recogniti 86.8 15 0.0005 40.1 16.3 35 137-171 100-136 (443)
25 4dzz_A Plasmid partitioning pr 85.9 0.58 2E-05 44.0 4.2 33 137-169 1-36 (206)
26 3cio_A ETK, tyrosine-protein k 85.4 0.66 2.3E-05 47.7 4.6 35 135-169 102-139 (299)
27 3fgn_A Dethiobiotin synthetase 85.4 0.64 2.2E-05 46.9 4.4 36 135-170 24-62 (251)
28 1xjc_A MOBB protein homolog; s 85.2 0.7 2.4E-05 43.9 4.3 36 136-171 3-40 (169)
29 1g3q_A MIND ATPase, cell divis 84.2 0.77 2.6E-05 44.4 4.2 32 138-169 3-37 (237)
30 3la6_A Tyrosine-protein kinase 83.8 0.77 2.6E-05 47.0 4.2 35 135-169 90-127 (286)
31 3kl4_A SRP54, signal recogniti 83.5 8.2 0.00028 41.9 12.5 36 137-172 97-134 (433)
32 3ez2_A Plasmid partition prote 83.4 1.5 5E-05 46.5 6.4 53 117-169 85-149 (398)
33 2oze_A ORF delta'; para, walke 83.3 1.2 4.1E-05 44.9 5.4 44 118-169 23-71 (298)
34 1wcv_1 SOJ, segregation protei 80.9 0.98 3.3E-05 44.7 3.6 34 136-169 5-41 (257)
35 1hyq_A MIND, cell division inh 80.5 1.2 4E-05 43.9 4.0 32 138-169 3-37 (263)
36 3q9l_A Septum site-determining 79.7 1.4 4.7E-05 43.1 4.2 32 138-169 3-37 (260)
37 2ph1_A Nucleotide-binding prot 78.9 1.5 5.1E-05 43.5 4.2 32 138-169 19-53 (262)
38 3qxc_A Dethiobiotin synthetase 78.8 1.5 5.3E-05 43.8 4.3 34 137-170 21-57 (242)
39 3ea0_A ATPase, para family; al 78.4 1.2 4.3E-05 43.0 3.4 34 136-169 3-40 (245)
40 2xj4_A MIPZ; replication, cell 78.1 1.5 5.3E-05 44.2 4.1 32 138-169 5-39 (286)
41 3k9g_A PF-32 protein; ssgcid, 76.7 1.5 5.2E-05 43.3 3.6 34 135-169 25-61 (267)
42 2f1r_A Molybdopterin-guanine d 75.4 1.8 6.1E-05 40.9 3.5 39 138-188 3-43 (171)
43 3fkq_A NTRC-like two-domain pr 75.3 3.3 0.00011 43.5 5.9 36 134-169 140-178 (373)
44 3cwq_A Para family chromosome 75.1 1.8 6.3E-05 41.6 3.5 30 139-169 2-34 (209)
45 3ez9_A Para; DNA binding, wing 74.6 2.8 9.7E-05 44.4 5.2 53 117-169 88-152 (403)
46 2px0_A Flagellar biosynthesis 70.1 2.5 8.5E-05 43.4 3.3 34 137-170 105-141 (296)
47 1vma_A Cell division protein F 69.8 6.3 0.00022 40.7 6.3 35 136-170 103-139 (306)
48 1cp2_A CP2, nitrogenase iron p 69.1 3.4 0.00012 40.7 3.9 32 138-169 2-35 (269)
49 2afh_E Nitrogenase iron protei 69.0 3.8 0.00013 41.0 4.4 32 138-169 3-36 (289)
50 1zu4_A FTSY; GTPase, signal re 68.6 6.2 0.00021 40.9 6.0 35 136-170 104-140 (320)
51 3end_A Light-independent proto 68.4 4 0.00014 41.3 4.4 35 135-169 39-75 (307)
52 1rz3_A Hypothetical protein rb 65.0 8.4 0.00029 36.4 5.7 35 136-170 21-57 (201)
53 2g0t_A Conserved hypothetical 63.9 5.5 0.00019 42.2 4.5 36 137-172 169-207 (350)
54 3c8u_A Fructokinase; YP_612366 63.1 15 0.00052 34.7 7.1 33 136-168 21-55 (208)
55 3zq6_A Putative arsenical pump 63.0 5.7 0.0002 40.9 4.4 37 134-170 10-49 (324)
56 1np6_A Molybdopterin-guanine d 59.6 8 0.00027 36.5 4.4 35 137-171 6-42 (174)
57 3tqc_A Pantothenate kinase; bi 59.1 28 0.00095 36.1 8.8 35 135-169 90-128 (321)
58 3pg5_A Uncharacterized protein 57.8 6.8 0.00023 41.0 3.9 33 137-169 1-36 (361)
59 2i3b_A HCR-ntpase, human cance 52.0 13 0.00045 35.3 4.6 32 139-170 3-36 (189)
60 3ug7_A Arsenical pump-driving 51.4 7.4 0.00025 40.6 2.9 35 136-170 24-61 (349)
61 3e70_C DPA, signal recognition 50.9 7.3 0.00025 40.6 2.7 34 137-170 129-164 (328)
62 1a7j_A Phosphoribulokinase; tr 50.5 15 0.0005 37.4 4.9 34 137-170 5-40 (290)
63 2woo_A ATPase GET3; tail-ancho 47.4 12 0.00042 38.5 3.8 33 138-170 19-54 (329)
64 2v3c_C SRP54, signal recogniti 46.0 9.1 0.00031 41.4 2.6 34 138-171 100-135 (432)
65 2vo1_A CTP synthase 1; pyrimid 44.5 18 0.00062 37.0 4.3 34 135-168 21-58 (295)
66 3te6_A Regulatory protein SIR3 43.8 11 0.00036 39.3 2.6 59 137-205 48-106 (318)
67 3b9q_A Chloroplast SRP recepto 43.3 23 0.00079 36.2 5.0 34 137-170 100-135 (302)
68 3p32_A Probable GTPase RV1496/ 43.3 27 0.00094 36.2 5.7 48 121-170 65-114 (355)
69 1nks_A Adenylate kinase; therm 42.9 18 0.00061 32.9 3.8 32 138-169 2-35 (194)
70 2z0h_A DTMP kinase, thymidylat 42.1 23 0.0008 32.4 4.5 29 139-167 2-32 (197)
71 1j8m_F SRP54, signal recogniti 41.5 27 0.00092 35.6 5.2 35 137-171 98-134 (297)
72 2p67_A LAO/AO transport system 41.2 28 0.00095 36.0 5.3 46 123-170 44-91 (341)
73 2yvu_A Probable adenylyl-sulfa 40.3 29 0.00098 31.9 4.8 32 138-169 14-47 (186)
74 2j37_W Signal recognition part 39.4 36 0.0012 37.5 6.2 35 136-170 100-136 (504)
75 3igf_A ALL4481 protein; two-do 39.1 1.2E+02 0.004 32.1 9.8 28 144-171 11-38 (374)
76 2xxa_A Signal recognition part 38.8 24 0.00084 38.1 4.6 36 136-171 99-137 (433)
77 1nn5_A Similar to deoxythymidy 38.5 29 0.001 32.2 4.6 32 138-169 10-43 (215)
78 2og2_A Putative signal recogni 38.5 29 0.00098 36.6 5.0 34 137-170 157-192 (359)
79 1nij_A Hypothetical protein YJ 38.0 18 0.00061 37.1 3.2 48 136-190 3-52 (318)
80 3kjh_A CO dehydrogenase/acetyl 37.8 9.2 0.00031 36.5 0.9 30 140-169 3-34 (254)
81 2pbr_A DTMP kinase, thymidylat 37.1 23 0.0008 32.2 3.6 29 139-167 2-32 (195)
82 1pjq_A CYSG, siroheme synthase 37.0 20 0.0007 38.8 3.6 23 139-162 123-146 (457)
83 1xx6_A Thymidine kinase; NESG, 36.9 47 0.0016 31.6 5.8 33 138-170 9-43 (191)
84 2ffh_A Protein (FFH); SRP54, s 36.5 15 0.00053 39.7 2.5 35 137-171 98-134 (425)
85 2pez_A Bifunctional 3'-phospho 36.3 30 0.001 31.5 4.2 29 138-166 6-36 (179)
86 3pzx_A Formate--tetrahydrofola 36.2 39 0.0013 37.5 5.6 43 124-169 47-95 (557)
87 2wwf_A Thymidilate kinase, put 36.2 37 0.0012 31.5 4.9 31 138-168 11-43 (212)
88 2c5m_A CTP synthase; cytidine 35.7 22 0.00076 36.2 3.3 34 135-168 21-58 (294)
89 1g5t_A COB(I)alamin adenosyltr 35.2 30 0.001 33.5 4.1 32 138-169 29-62 (196)
90 2yhs_A FTSY, cell division pro 34.6 48 0.0016 36.7 6.1 34 136-169 292-327 (503)
91 1rj9_A FTSY, signal recognitio 34.3 35 0.0012 34.9 4.7 34 137-170 102-137 (304)
92 3iqw_A Tail-anchored protein t 34.0 23 0.00077 36.9 3.2 27 144-170 25-51 (334)
93 3io3_A DEHA2D07832P; chaperone 33.9 25 0.00086 36.8 3.6 34 138-171 19-56 (348)
94 2jeo_A Uridine-cytidine kinase 31.6 22 0.00074 34.6 2.5 22 138-159 26-49 (245)
95 2q3l_A Uncharacterized protein 31.4 2.6E+02 0.009 24.4 9.5 105 414-615 22-126 (126)
96 3lv8_A DTMP kinase, thymidylat 30.8 36 0.0012 33.6 4.0 33 138-170 28-62 (236)
97 4ehx_A Tetraacyldisaccharide 4 30.4 56 0.0019 33.7 5.5 49 120-170 18-71 (315)
98 2if2_A Dephospho-COA kinase; a 30.4 18 0.00062 33.7 1.6 20 138-157 2-23 (204)
99 3do6_A Formate--tetrahydrofola 30.4 82 0.0028 34.8 6.9 94 222-320 274-395 (543)
100 3hjn_A DTMP kinase, thymidylat 30.2 18 0.0006 34.5 1.5 28 146-173 11-38 (197)
101 2woj_A ATPase GET3; tail-ancho 29.0 38 0.0013 35.3 4.0 33 138-170 18-55 (354)
102 2w0m_A SSO2452; RECA, SSPF, un 28.9 43 0.0015 31.2 4.0 33 138-170 24-58 (235)
103 3asz_A Uridine kinase; cytidin 28.8 26 0.0009 32.7 2.5 23 138-160 7-31 (211)
104 3aez_A Pantothenate kinase; tr 28.5 40 0.0014 34.5 4.0 35 135-169 88-126 (312)
105 1uf9_A TT1252 protein; P-loop, 28.4 25 0.00086 32.4 2.2 26 133-158 4-31 (203)
106 3ec2_A DNA replication protein 28.3 53 0.0018 29.8 4.5 31 138-168 39-72 (180)
107 2qm8_A GTPase/ATPase; G protei 27.4 68 0.0023 33.1 5.5 46 123-170 43-90 (337)
108 1jjv_A Dephospho-COA kinase; P 27.3 29 0.00098 32.4 2.4 20 138-157 3-24 (206)
109 1ls1_A Signal recognition part 26.9 49 0.0017 33.5 4.3 35 136-170 97-133 (295)
110 1gtv_A TMK, thymidylate kinase 26.1 16 0.00055 34.2 0.4 35 139-173 2-38 (214)
111 4a0g_A Adenosylmethionine-8-am 26.1 35 0.0012 40.0 3.3 34 137-170 34-75 (831)
112 1odf_A YGR205W, hypothetical 3 25.8 33 0.0011 34.8 2.7 28 136-163 30-59 (290)
113 1vco_A CTP synthetase; tetrame 25.7 46 0.0016 37.2 4.0 34 138-171 13-50 (550)
114 3upu_A ATP-dependent DNA helic 25.6 30 0.001 37.2 2.5 36 137-173 48-83 (459)
115 3e1s_A Exodeoxyribonuclease V, 24.9 35 0.0012 38.2 2.9 35 138-173 205-241 (574)
116 3bos_A Putative DNA replicatio 24.7 46 0.0016 31.1 3.4 35 138-172 53-89 (242)
117 1s1m_A CTP synthase; CTP synth 24.6 50 0.0017 36.9 4.0 34 138-171 4-41 (545)
118 1sq5_A Pantothenate kinase; P- 24.3 50 0.0017 33.5 3.7 26 135-160 78-105 (308)
119 2kjq_A DNAA-related protein; s 24.0 1E+02 0.0035 27.6 5.5 33 138-170 37-71 (149)
120 4tmk_A Protein (thymidylate ki 23.6 69 0.0024 30.9 4.4 29 138-166 4-35 (213)
121 1ihu_A Arsenical pump-driving 23.5 55 0.0019 36.3 4.2 34 138-171 9-44 (589)
122 3ake_A Cytidylate kinase; CMP 23.5 38 0.0013 31.3 2.5 22 138-159 3-26 (208)
123 1uj2_A Uridine-cytidine kinase 23.4 33 0.0011 33.4 2.1 26 136-161 21-48 (252)
124 1zuh_A Shikimate kinase; alpha 23.2 39 0.0013 30.3 2.4 25 135-159 5-31 (168)
125 3tr0_A Guanylate kinase, GMP k 23.0 32 0.0011 31.8 1.8 22 138-159 8-31 (205)
126 3a00_A Guanylate kinase, GMP k 22.7 22 0.00074 33.0 0.6 23 138-160 2-26 (186)
127 1cke_A CK, MSSA, protein (cyti 22.5 40 0.0014 31.7 2.5 22 138-159 6-29 (227)
128 1yrb_A ATP(GTP)binding protein 22.2 72 0.0024 30.6 4.3 33 137-170 14-48 (262)
129 3lnc_A Guanylate kinase, GMP k 22.0 41 0.0014 32.1 2.5 23 138-160 28-53 (231)
130 3pzx_A Formate--tetrahydrofola 21.8 75 0.0026 35.3 4.6 91 222-317 288-406 (557)
131 3kb2_A SPBC2 prophage-derived 21.8 44 0.0015 29.7 2.5 22 138-159 2-25 (173)
132 3nva_A CTP synthase; rossman f 21.5 72 0.0025 35.6 4.5 33 137-169 3-39 (535)
133 3dfr_A Dihydrofolate reductase 21.5 62 0.0021 30.0 3.5 40 600-645 72-111 (162)
134 2plr_A DTMP kinase, probable t 21.0 62 0.0021 29.7 3.4 28 138-166 5-34 (213)
135 2e2z_A TIM15; protein import, 21.0 73 0.0025 27.7 3.5 37 266-302 51-90 (100)
136 4edh_A DTMP kinase, thymidylat 20.5 85 0.0029 30.2 4.4 35 138-172 7-43 (213)
137 3syl_A Protein CBBX; photosynt 20.4 1.1E+02 0.0037 30.2 5.3 27 137-164 70-96 (309)
138 3tau_A Guanylate kinase, GMP k 20.1 45 0.0015 31.4 2.3 23 138-160 9-33 (208)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=6.1e-72 Score=614.08 Aligned_cols=401 Identities=26% Similarity=0.319 Sum_probs=311.6
Q ss_pred CCCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCC
Q 006403 85 LSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGF 164 (646)
Q Consensus 85 ~~~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~ 164 (646)
...+|+++++||.++..+ +.+++|+||+++|++|| +|+.++++|||||||||||||+|+++||+++|+
T Consensus 12 ~~~~~~~~l~~l~~~~~~----------~~~~gL~r~~~ll~~lg--~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~ 79 (437)
T 3nrs_A 12 ATSPLAAWLCYLEHLHSQ----------PIELGLERVKQVAERLD--LLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGL 79 (437)
T ss_dssp TTSCHHHHHHHHHTC-----------------CCHHHHHHHHHTT--CSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHcC--CccccCCEEEEECCcChHHHHHHHHHHHHHCCC
Confidence 356899999999998754 23479999999999999 588899999999999999999999999999999
Q ss_pred CeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC
Q 006403 165 RTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG 244 (646)
Q Consensus 165 kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G 244 (646)
|||+||||||.+|||||+|||++|+++.|.++|.+|..... + ..|++||++|++||.+|.++++|++|||||+|
T Consensus 80 ~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlg 153 (437)
T 3nrs_A 80 RVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG-----D-ISLTYFEFGTLSALQLFKQAKLDVVILEVGLG 153 (437)
T ss_dssp CEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT-----T-CCCCHHHHHHHHHHHHHHHTCCSEEEEECSSS
T ss_pred cEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc-----C-CCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 99999999999999999999999999999998877655321 1 35899999999999999999999999999999
Q ss_pred CCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-c
Q 006403 245 GEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L 323 (646)
Q Consensus 245 Gr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~ 323 (646)
||+|+||++ +|+++|||||++||+++||+|+|+||++|++|||++.++|++.+++. .++.+.|++.+++++.++. +
T Consensus 154 grld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~d~~~--~~~~~~a~~~~~~~~~~g~~~ 230 (437)
T 3nrs_A 154 GRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDMP--QSIADVAAELGAQLYRRDVAW 230 (437)
T ss_dssp STTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTE
T ss_pred Ccccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECCccHH--HHHHHHHHHcCCcEEEecccc
Confidence 999999998 69999999999999999999999999999999999999999977643 4677788888888776542 1
Q ss_pred ccc----------------c-------hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHH
Q 006403 324 DIE----------------K-------LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVR 380 (646)
Q Consensus 324 ~~~----------------~-------~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~ 380 (646)
++. . ...+.++++| ||..|++.|++++..+ ..| ..+++|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~--~lg-------------i~~~~i~~ 294 (437)
T 3nrs_A 231 KFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS--ELP-------------LSDEAIRQ 294 (437)
T ss_dssp EEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH--TCC-------------CCHHHHHH
T ss_pred eeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh--CCC-------------CCHHHHHH
Confidence 100 0 0124566775 4666666666555443 113 23688999
Q ss_pred HHhcCCCCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhH
Q 006403 381 GLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEE 460 (646)
Q Consensus 381 gL~~~~~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (646)
||++++||||||++... +.+|+||||||+|+++++++++...+..
T Consensus 295 gL~~~~~pGR~e~v~~~----------------~~vi~D~AHNp~a~~all~~l~~~~~~~------------------- 339 (437)
T 3nrs_A 295 GLQAASLPGRFQVVSEQ----------------PLLILDVAHNPHAARYLVNRLAQVINPV------------------- 339 (437)
T ss_dssp HHHHCCCTTSSEEEETT----------------TEEEECCCCSHHHHHHHHHHHHHTC----------------------
T ss_pred HHHhCCCCCceEEEecC----------------CeEEEECCCCHHHHHHHHHHHHhhcchh-------------------
Confidence 99999999999999754 4799999999999999999987211000
Q ss_pred HHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCc
Q 006403 461 VVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAI 540 (646)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~ 540 (646)
...+.+|+++|||+++|||...+++.|.+ .++++++++... .+..++
T Consensus 340 ----------------~~~~~~r~i~V~G~~~dkd~~~~~~~l~~-------~~~~v~~~~~~~--------~r~~~~-- 386 (437)
T 3nrs_A 340 ----------------NASKQGKVRAVVGMLSDKDIAGTLACLSE-------RVDEWYCAPLEG--------PRGASA-- 386 (437)
T ss_dssp ---------------------CCEEEEECCBTTBCHHHHHHHHTT-------TCCEEEECCCSS--------TTBCCH--
T ss_pred ----------------hhcCCCCEEEEEeCCCCCCHHHHHHHHHh-------cCCEEEEeCCCC--------CCCCCH--
Confidence 00123578999999999999888776642 468888876541 111111
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhc
Q 006403 541 SGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQE 620 (646)
Q Consensus 541 ~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~ 620 (646)
+++...-. .. .+++++++|++++.+.++.
T Consensus 387 ---------------~~l~~~~~-----------------------------------~~-~~~~d~~~Ai~~a~~~a~~ 415 (437)
T 3nrs_A 387 ---------------GQLAEHLV-----------------------------------SA-RQFSDVETAWRQAMQDADT 415 (437)
T ss_dssp ---------------HHHHTTCS-----------------------------------SC-EECSSHHHHHHHHHHHCCT
T ss_pred ---------------HHHHHHHh-----------------------------------hC-CCcCCHHHHHHHHHHhcCC
Confidence 11211000 01 4678999999999887643
Q ss_pred CCCCcceEEEeCchhcHHhHHhhhc
Q 006403 621 NPSIRVQVLVTGSLHLVGDVLKLLK 645 (646)
Q Consensus 621 ~~~~~~~VLVTGSlhLVG~vl~~l~ 645 (646)
.--|||+||||+||++++.|.
T Consensus 416 ----~D~VLv~GS~~~v~~~~~~~~ 436 (437)
T 3nrs_A 416 ----QDVVIVCGSFHTVAHVMAALH 436 (437)
T ss_dssp ----TCEEEEESSHHHHHHHHHHTT
T ss_pred ----CCeEEEEehHHHHHHHHHHhc
Confidence 226999999999999998874
No 2
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=4e-71 Score=615.54 Aligned_cols=415 Identities=25% Similarity=0.321 Sum_probs=330.1
Q ss_pred cHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeE
Q 006403 88 SYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 88 ~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvG 167 (646)
+|+++++||.++.... +..++|+||+.+++.|| +|+.++++|||||||||||||+||++||+++|++||
T Consensus 26 ~~~~~~~~l~~~~~~~---------~~~~~L~r~~~ll~~lg--~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG 94 (487)
T 2vos_A 26 SLLQVEHLLDQRWPET---------RIDPSLTRISALMDLLG--SPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTG 94 (487)
T ss_dssp HHHHHHHHHTTTC------------CCCTTCHHHHHHHHHTT--CGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhhCccc---------CCCCCHHHHHHHHHHcC--CchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeE
Confidence 5889999888753210 12378999999999999 688899999999999999999999999999999999
Q ss_pred EEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhc----c---CCCCCCCHHHHHHHHHHHHhhhCCCcEEEEe
Q 006403 168 LFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENV----T---EDLPMPPLFQFLTVLAFKIFVCEQVDVAIIE 240 (646)
Q Consensus 168 l~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~----~---~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlE 240 (646)
+||||||.++||||+|||.+|+++.|.++|.++....+... + .....+++||++|++||.+|.++++|++|||
T Consensus 95 ~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlE 174 (487)
T 2vos_A 95 RTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVE 174 (487)
T ss_dssp EECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999888776544311 0 0122489999999999999999999999999
Q ss_pred eccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhccc------CCCCcEEEeCCchHHHHHHHHHHHhcC
Q 006403 241 VGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF------KPQIPAFTVPQLSEAMSVLQDRALELM 314 (646)
Q Consensus 241 vG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIf------k~g~~av~~~q~~~~~~vl~~~a~~~~ 314 (646)
||+||++|+||++ +|+++|||||++||+++||+|+|+||++|++|| |++.++|++.|++++.+++.+.|.+.+
T Consensus 175 vg~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~ 253 (487)
T 2vos_A 175 VGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRAD 253 (487)
T ss_dssp CSSSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 9999999999998 699999999999999999999999999999999 889999999999988888888887777
Q ss_pred ccEEEecc-c--------------ccc----chhcccccCcchhhHhhHHHHHHHHHHHHHhc---CCCcccccCCCCCC
Q 006403 315 VPLEVAAP-L--------------DIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT---GNWEKVSHNDGQGA 372 (646)
Q Consensus 315 ~~l~~~~~-~--------------~~~----~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~---G~~~~~~~~~~~~~ 372 (646)
++++.++. + .+. .+..+.++++|.||++|+++|++++..++... |
T Consensus 254 ~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~g------------- 320 (487)
T 2vos_A 254 ASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQ------------- 320 (487)
T ss_dssp CEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----C-------------
T ss_pred CeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCC-------------
Confidence 77655431 1 110 01246789999999999999999998762210 2
Q ss_pred CcHHHHHHHHhcCCCCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccc
Q 006403 373 DLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSST 452 (646)
Q Consensus 373 ~l~e~i~~gL~~~~~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~ 452 (646)
..++.|.+||++++||||||++... +.+|+||||||+|++++++++++..
T Consensus 321 i~~~~i~~gL~~~~~pGR~e~v~~~----------------~~vi~D~AHNp~a~~a~l~~l~~~~-------------- 370 (487)
T 2vos_A 321 LDGDAVRAGFAAVTSPGRLERMRSA----------------PTVFIDAAHNPAGASALAQTLAHEF-------------- 370 (487)
T ss_dssp CCHHHHHHHHHTCCCTTSSEEEETT----------------TEEEECCCCSHHHHHHHHHHHHHSC--------------
T ss_pred CCHHHHHHHHHhCcCCCceEEEcCC----------------CeEEEECCCCHHHHHHHHHHHHHhc--------------
Confidence 2368899999999999999999753 5799999999999999999987531
Q ss_pred cccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCC
Q 006403 453 TKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSG 532 (646)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~ 532 (646)
+..++++|||+++|||...+++.|.+ .+|.+++++.. +
T Consensus 371 ---------------------------~~~~~i~V~G~~~dkd~~~~~~~l~~-------~~d~vilt~~~--------~ 408 (487)
T 2vos_A 371 ---------------------------DFRFLVGVLSVLGDKDVDGILAALEP-------VFDSVVVTHNG--------S 408 (487)
T ss_dssp ---------------------------CCSEEEEEECCBTTBCHHHHHHHHTT-------TCSEEEECCCS--------C
T ss_pred ---------------------------CCCCEEEEEEecCCCCHHHHHHHHHh-------hCCEEEEeCCC--------C
Confidence 23478999999999999888776642 46888887643 1
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHH
Q 006403 533 SSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIK 612 (646)
Q Consensus 533 ~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~ 612 (646)
.+..++ ..+++.++.... . ..+.+++++++|++
T Consensus 409 ~r~~~~----------~~l~~~~~~~~~-~------------------------------------~~~~~~~~~~~Ai~ 441 (487)
T 2vos_A 409 PRALDV----------EALALAAGERFG-P------------------------------------DRVRTAENLRDAID 441 (487)
T ss_dssp TTBCCH----------HHHHHHHHHHHC-G------------------------------------GGEEECSSHHHHHH
T ss_pred cCCCCH----------HHHHHHHHhhcC-C------------------------------------CceEecCCHHHHHH
Confidence 121111 123444443211 0 03567899999999
Q ss_pred HHHhhhhcC------C---CCcceEEEeCchhcHHhHHhhhcC
Q 006403 613 WLRDSVQEN------P---SIRVQVLVTGSLHLVGDVLKLLKR 646 (646)
Q Consensus 613 ~~r~~~~~~------~---~~~~~VLVTGSlhLVG~vl~~l~~ 646 (646)
.+...+++. . ...--|||||||||||+++++|++
T Consensus 442 ~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y~vg~~~~~l~~ 484 (487)
T 2vos_A 442 VATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGR 484 (487)
T ss_dssp HHHHHHHHHHTCTTTTC----CEEEEEESSHHHHHHHHHHTTC
T ss_pred HHHHhcccCcccccccccccCCCEEEEEeeHHHHHHHHHhhhh
Confidence 987776532 0 012479999999999999998863
No 3
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=3.6e-68 Score=581.84 Aligned_cols=404 Identities=27% Similarity=0.388 Sum_probs=324.3
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 006403 87 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 87 ~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kv 166 (646)
|+|+++++||+++..+ +.+++|++|+++|++|| +|..++++|||||||||||||+|+++||+++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~----------~~~~~l~~~~~~l~~lg--~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~v 68 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL----------AKTGDHRRILTLLHALG--NPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTV 68 (428)
T ss_dssp CCHHHHHHHHTTCCCC----------CCCSSCHHHHHHHHHTT--CGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHhhccc----------CCCCCHHHHHHHHHHcC--CchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCE
Confidence 5799999999987542 22378999999999999 58888999999999999999999999999999999
Q ss_pred EEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhc-cCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCC
Q 006403 167 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENV-TEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG 245 (646)
Q Consensus 167 Gl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~-~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GG 245 (646)
|+|||||+.++||||+|||.+|+++.|.++|+++++...... ......|++||++|++||.+|.++++|++|+|||+||
T Consensus 69 g~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g 148 (428)
T 1jbw_A 69 GLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGG 148 (428)
T ss_dssp EEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred EEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCc
Confidence 999999999999999999999999999999998887654321 0011348999999999999999999999999999999
Q ss_pred CccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-c-
Q 006403 246 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L- 323 (646)
Q Consensus 246 r~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~- 323 (646)
++|+||++ +|+++|||||++||+++||+|+|+|+++|++||+++.++|++.|++++.+++++.|.+.+++++.++. +
T Consensus 149 ~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~~~ 227 (428)
T 1jbw_A 149 DTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFS 227 (428)
T ss_dssp TTSTTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEE
T ss_pred cccccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCccce
Confidence 99999999 69999999999999999999999999999999999999999999998888888877766666655431 1
Q ss_pred -------------ccc----chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC
Q 006403 324 -------------DIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH 386 (646)
Q Consensus 324 -------------~~~----~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~ 386 (646)
... .+..+.++++|.||++|+++|++++..+....+. ...++.|.+||++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~-----------~i~~~~i~~~L~~~~ 296 (428)
T 1jbw_A 228 VPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEW-----------PLTPQNIRQGLAASH 296 (428)
T ss_dssp EEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTC-----------CCCHHHHHHHHHTCC
T ss_pred eeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhccCC-----------CCCHHHHHHHHHhCc
Confidence 010 0115678999999999999999999875232211 013688999999999
Q ss_pred CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcc
Q 006403 387 LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNG 466 (646)
Q Consensus 387 ~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (646)
||||||++... ..+|+||||||+|++++++++++..
T Consensus 297 ~~gR~e~~~~~----------------~~viiD~AhNp~s~~a~l~~l~~~~---------------------------- 332 (428)
T 1jbw_A 297 WPARLEKISDT----------------PLIVIDGAHNPDGINGLITALKQLF---------------------------- 332 (428)
T ss_dssp CTTSSEEEETT----------------TTEEEECCCSHHHHHHHHHHHHHHC----------------------------
T ss_pred CCCceEEecCC----------------CcEEEECCcCHHHHHHHHHHHHHhc----------------------------
Confidence 99999999753 3589999999999999999987641
Q ss_pred ccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchh
Q 006403 467 YIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLS 546 (646)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~ 546 (646)
+ .|+++|||++++||...+++.+.+ .+|.+++++... ..+..+++
T Consensus 333 -------------~-~~~i~V~g~~~~kd~~~~~~~~~~-------~~d~vi~~~~~~-------~~r~~~~~------- 377 (428)
T 1jbw_A 333 -------------S-QPITVIAGILADKDYAAMADRLTA-------AFSTVYLVPVPG-------TPRALPEA------- 377 (428)
T ss_dssp -------------S-SCCEEEEECSSSTTHHHHHHHHHH-------HCSEEEECCCSC-------C--------------
T ss_pred -------------C-CCEEEEEeeCCCCCHHHHHHHHhh-------hCCEEEEECCCC-------CCCCCCHH-------
Confidence 2 468999999999999988877653 268888855420 01111000
Q ss_pred HHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcc
Q 006403 547 WQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRV 626 (646)
Q Consensus 547 ~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~ 626 (646)
.+... . .+.++++.++|++.+.+.+ . + -
T Consensus 378 ----------~l~~~-~------------------------------------~~~~~~~~~~ai~~a~~~~-~--~--d 405 (428)
T 1jbw_A 378 ----------GYEAL-H------------------------------------EGRLKDSWQEALAASLNDV-P--D--Q 405 (428)
T ss_dssp -------------------------------------------------------CBCSSHHHHHHHHHHHC-T--T--S
T ss_pred ----------HHHhh-h------------------------------------CCeecCCHHHHHHHHHhhC-C--C--C
Confidence 11000 0 1235679999999887655 3 1 2
Q ss_pred eEEEeCchhcHHhHHhhhc
Q 006403 627 QVLVTGSLHLVGDVLKLLK 645 (646)
Q Consensus 627 ~VLVTGSlhLVG~vl~~l~ 645 (646)
-|||+||++++|++++.|+
T Consensus 406 ~vLv~GS~~~~~~~~~~l~ 424 (428)
T 1jbw_A 406 PIVITGSLYLASAVRQTLL 424 (428)
T ss_dssp CEEEEESHHHHHHHHHHHT
T ss_pred eEEEEeeHHHHHHHHHHHh
Confidence 5999999999999998875
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=1.7e-68 Score=587.44 Aligned_cols=400 Identities=30% Similarity=0.445 Sum_probs=318.9
Q ss_pred CCcHHHHHHHHHhhhhhhhcCCCccccc-cCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCC
Q 006403 86 SSSYENAMQALSSLITRQKRGEQSHIAG-RYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGF 164 (646)
Q Consensus 86 ~~~y~~A~~~L~sl~~~~~~~~~~~~~~-~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~ 164 (646)
.|.|++++++|+++..+ + .+.+|++|+++|++|| +|..++++|||||||||||||+|+++||+++|+
T Consensus 12 ~~~~~~~~~~l~~~~~~----------~~~~~gl~~~~~~l~~lg--~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~ 79 (442)
T 1o5z_A 12 HMAYLEVLRYLYHKRPM----------GKVKPGLERISMLLSKLG--NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGY 79 (442)
T ss_dssp HHHHHHHHHHHHTC---------------CCCCSHHHHHHHHHTT--CGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHhhCcC----------CCCCCCHHHHHHHHHHcC--CchhcCCEEEEECCcCHHHHHHHHHHHHHHCCC
Confidence 46799999999987543 1 2378999999999999 588889999999999999999999999999999
Q ss_pred CeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC
Q 006403 165 RTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG 244 (646)
Q Consensus 165 kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G 244 (646)
+||+||||||.++||||+|||.+|+++.|.++|.++++............|++||++|++||.+|.++++|++|+|||+|
T Consensus 80 ~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~ 159 (442)
T 1o5z_A 80 RVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG 159 (442)
T ss_dssp CEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 99999999999999999999999999999999988887654432222345899999999999999999999999999999
Q ss_pred CCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-c
Q 006403 245 GEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L 323 (646)
Q Consensus 245 Gr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~ 323 (646)
|++|+||++ +|+++|||||++||+|+||+|+|+|+++|++||+++.++|++.|++++.+++++.|.+.+++++.++. +
T Consensus 160 g~~d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d~ 238 (442)
T 1o5z_A 160 GRLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDF 238 (442)
T ss_dssp STTCGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTB
T ss_pred CCccccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCcce
Confidence 999999998 69999999999999999999999999999999999999999999998888888878777777766542 1
Q ss_pred cc--------c---------chhcccccCcchhhHhhHHHHHHHHH--HHHHhcCCCcccccCCCCCCCcHHHHHHHHhc
Q 006403 324 DI--------E---------KLKRLELSLSGDHQLVNAGLAVSLSE--CWLRRTGNWEKVSHNDGQGADLPDAFVRGLST 384 (646)
Q Consensus 324 ~~--------~---------~~~~v~l~L~G~hq~~NAalAia~a~--~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~ 384 (646)
.. . .+..+.++++|.||++|+++|++++. .+ | ..++.|.+||++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l----g-------------i~~~~i~~~L~~ 301 (442)
T 1o5z_A 239 SVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL----P-------------LSEKAIREGLKN 301 (442)
T ss_dssp EEEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC----C-------------CCHHHHHHHHHH
T ss_pred eeeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc----C-------------CCHHHHHHHHHh
Confidence 10 0 01146789999999999999999998 65 5 236889999999
Q ss_pred CCCCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhh
Q 006403 385 AHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQR 464 (646)
Q Consensus 385 ~~~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (646)
+.||||||++... +..+|+|+||||+|++++++++++..
T Consensus 302 ~~~~gR~e~~~~~---------------~~~viiD~AhNp~s~~~~l~~l~~~~-------------------------- 340 (442)
T 1o5z_A 302 AKNLGRFEILEKN---------------GKMYILDGAHNPHGAESLVRSLKLYF-------------------------- 340 (442)
T ss_dssp CCCTTSSEEEEET---------------TEEEEECCCCSHHHHHHHHHHHHHHC--------------------------
T ss_pred CCCCCceEEEEcC---------------CCeEEEECCcCHHHHHHHHHHHHHhC--------------------------
Confidence 9999999999754 25799999999999999999987641
Q ss_pred ccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccc
Q 006403 465 NGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKD 544 (646)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (646)
+..++++|||++++||...+++.+.+ .+|.+++++.. +.+..++
T Consensus 341 ---------------~~~~~i~V~g~~~dkd~~~~~~~l~~-------~~d~vi~~~~~--------~~r~~~~------ 384 (442)
T 1o5z_A 341 ---------------NGEPLSLVIGILDDKNREDILRKYTG-------IFERVIVTRVP--------SPRMKDM------ 384 (442)
T ss_dssp ---------------TTCCEEEEECCCTTSCHHHHHGGGTT-------TCSEEEECCCS--------STTCCCH------
T ss_pred ---------------CCCCEEEEEecCCCCCHHHHHHHHHh-------hCCEEEEECCC--------CCCCCCH------
Confidence 22478999999999998876655432 47888888743 1111111
Q ss_pred hhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCC
Q 006403 545 LSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSI 624 (646)
Q Consensus 545 l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~ 624 (646)
..+++.++... ..+.+++++++|++.+ .
T Consensus 385 ----~~i~~~~~~~~---------------------------------------~~~~~~~~~~~Ai~~a----~----- 412 (442)
T 1o5z_A 385 ----NSLVDMAKKFF---------------------------------------KNVEVIEDPLEAIEST----E----- 412 (442)
T ss_dssp ----HHHHHHHHHHC---------------------------------------SCCEECSSHHHHHHTC----C-----
T ss_pred ----HHHHHHHHhcC---------------------------------------CCceecCCHHHHHHhC----C-----
Confidence 11223233210 0245678999998865 1
Q ss_pred cceEEEeCchhcHHhHHhhhc
Q 006403 625 RVQVLVTGSLHLVGDVLKLLK 645 (646)
Q Consensus 625 ~~~VLVTGSlhLVG~vl~~l~ 645 (646)
--|||+||++++|++++.|+
T Consensus 413 -d~VLv~GS~~~~~~~~~~l~ 432 (442)
T 1o5z_A 413 -RATVVTGSLFLVGYVREFLT 432 (442)
T ss_dssp -SEEEEESCHHHHHHHHHHHH
T ss_pred -CEEEEEeeHHHHHHHHHHHH
Confidence 26999999999999998874
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=1.6e-64 Score=551.79 Aligned_cols=394 Identities=27% Similarity=0.328 Sum_probs=316.3
Q ss_pred CCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCC
Q 006403 86 SSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFR 165 (646)
Q Consensus 86 ~~~y~~A~~~L~sl~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~k 165 (646)
..+|++++++|.++..+ +..++|+||+++|++|| +|..++++|||||||||||||+|+++||+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~----------~~~~gl~r~~~~l~~lg--~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~ 77 (422)
T 1w78_A 10 ASPLASWLSYLENLHSK----------TIDLGLERVSLVAARLG--VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYK 77 (422)
T ss_dssp TSCHHHHHHHHTTSSSS----------SCCCCSHHHHHHHHHHT--CSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHhcccC----------CCCCCHHHHHHHHHHcC--CcccCCcEEEEeCCcChHHHHHHHHHHHHHCCCC
Confidence 34699999998876332 22378999999999999 5888899999999999999999999999999999
Q ss_pred eEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCC
Q 006403 166 TGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG 245 (646)
Q Consensus 166 vGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GG 245 (646)
+|+|+|||+.++||||+|||.+|+++.|.++|+++...+. + ..+++||++|++||.+|.++++|++|+|+|+||
T Consensus 78 ~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~ 151 (422)
T 1w78_A 78 VGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARG-----D-ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG 151 (422)
T ss_dssp EEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTT-----T-CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred EEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhc-----c-CCCChHHHHHHHHHHHHHHcCCCEEEEecCCCc
Confidence 9999999999999999999999999999999887765432 1 247999999999999999999999999999999
Q ss_pred CccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-cc
Q 006403 246 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-LD 324 (646)
Q Consensus 246 r~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~~ 324 (646)
++|+||++ +|+++|||||+.||+|+||+|+|+|+++|++||+++.++|++.+++. .++.+.+.+.+++++.++. +.
T Consensus 152 ~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~d~~~--~~~~~~a~~~~~~~~~~g~~~~ 228 (422)
T 1w78_A 152 RLDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMP--STIADVAQEKGALLQRRGVEWN 228 (422)
T ss_dssp TTSGGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTBE
T ss_pred ccccccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcCccHH--HHHHHHHHHcCCceEEeCccee
Confidence 99999998 69999999999999999999999999999999999999999876543 3566666666666665542 11
Q ss_pred ---------ccch-hc-ccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCcEEE
Q 006403 325 ---------IEKL-KR-LELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQI 393 (646)
Q Consensus 325 ---------~~~~-~~-v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR~E~ 393 (646)
+... .. +.++++ .||++|+++|++++..+ +. ...++.|.+||++++||||||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~----~~-----------gi~~~~i~~~L~~~~~~gR~e~ 292 (422)
T 1w78_A 229 YSVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS----GL-----------EVSENAIRDGIASAILPGRFQI 292 (422)
T ss_dssp EEECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH----TC-----------CCCHHHHHHHHHHCCCTTSSEE
T ss_pred eeccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh----CC-----------CCCHHHHHHHHHhCCCCceEEE
Confidence 0000 01 467888 99999999999999875 31 0236889999999999999999
Q ss_pred EeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccc
Q 006403 394 VYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKME 473 (646)
Q Consensus 394 v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (646)
+... ..+|+||||||+|++++++++++..
T Consensus 293 ~~~~----------------~~~i~D~Ahnp~s~~~~l~~l~~~~----------------------------------- 321 (422)
T 1w78_A 293 VSES----------------PRVIFDVAHNPHAAEYLTGRMKALP----------------------------------- 321 (422)
T ss_dssp EETT----------------TEEEEECCCSHHHHHHHHHHHHHSC-----------------------------------
T ss_pred EeCC----------------CeEEEECCCCHHHHHHHHHHHHHhC-----------------------------------
Confidence 9753 4689999999999999999987541
Q ss_pred cccccccCccEEEEEecCCCCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHH
Q 006403 474 KTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQR 553 (646)
Q Consensus 474 ~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~ 553 (646)
+.+++++|||++++||...+++.+.+ .+|.+++++... .+.. .. ..+.
T Consensus 322 ------~~~~~i~V~g~~~~kd~~~~~~~l~~-------~~d~vi~~~~~~--------~r~~----~~------~~l~- 369 (422)
T 1w78_A 322 ------KNGRVLAVIGMLHDKDIAGTLAWLKS-------VVDDWYCAPLEG--------PRGA----TA------EQLL- 369 (422)
T ss_dssp ------SCSCEEEEECCBTTSCHHHHHHHHHT-------TCSEEEECCCCS--------SSBC----CH------HHHH-
T ss_pred ------CCCCEEEEEeccCCCCHHHHHHHHHh-------hCCEEEEECCCC--------CCCC----CH------HHHH-
Confidence 13478999999999999877766642 378888887541 1110 00 0111
Q ss_pred HHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCc
Q 006403 554 LWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGS 633 (646)
Q Consensus 554 ~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGS 633 (646)
+.+. .+.+++++++|++++.+.++. .--|||+||
T Consensus 370 --~~~~----------------------------------------~~~~~~~~~~ai~~a~~~~~~----~d~vLv~GS 403 (422)
T 1w78_A 370 --EHLG----------------------------------------NGKSFDSVAQAWDAAMADAKA----EDTVLVCGS 403 (422)
T ss_dssp --HHHS----------------------------------------SCEECSSHHHHHHHHHHHCCT----TCEEEEESS
T ss_pred --HHHh----------------------------------------hcccCCCHHHHHHHHHHhcCC----CCEEEEEee
Confidence 2221 124678999999999876643 236999999
Q ss_pred hhcHHhHHhhhc
Q 006403 634 LHLVGDVLKLLK 645 (646)
Q Consensus 634 lhLVG~vl~~l~ 645 (646)
+|+||++++.|+
T Consensus 404 ~~~~~~~~~~l~ 415 (422)
T 1w78_A 404 FHTVAHVMEVID 415 (422)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 6
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=8.8e-52 Score=460.76 Aligned_cols=355 Identities=15% Similarity=0.113 Sum_probs=266.0
Q ss_pred ccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCC-CCCCcHHHHHHHHHhhhhhh
Q 006403 25 SVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENL-PLSSSYENAMQALSSLITRQ 103 (646)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~y~~A~~~L~sl~~~~ 103 (646)
.+....|||...|+.-|++++|+|+.++. | +.++++++|..+++ ++.. |...++.++ ...
T Consensus 21 i~~v~~DSR~v~~g~lFval~G~~~DGh~-----f---i~~A~~~GA~avv~---~~~~~~~~~e~~~~----~~~---- 81 (498)
T 1e8c_A 21 LREMTLDSRVAAAGDLFVAVVGHQADGRR-----Y---IPQAIAQGVAAIIA---EAKDEATDGEIREM----HGV---- 81 (498)
T ss_dssp CCCEESCGGGCCTTCEEEECBCSSCBGGG-----G---HHHHHHTTCSEEEE---ECTTTCCTTCEEEE----TTE----
T ss_pred eeeEEeeCcCCCCCCEEEEecCCcCCHHH-----H---HHHHHHCCCeEEEE---cCcccccccccccc----CCc----
Confidence 46788999999999999999999999998 8 99999999998887 2211 100000000 000
Q ss_pred hcCCCccccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccce
Q 006403 104 KRGEQSHIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRER 180 (646)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ER 180 (646)
+ .-.+++++++|..|. +.+|..++++||||||||||||++||++||+++|+++|+++|++
T Consensus 82 ------~----~i~V~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~------- 144 (498)
T 1e8c_A 82 ------P----VIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG------- 144 (498)
T ss_dssp ------E----EEEETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------
T ss_pred ------c----EEEECCHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------
Confidence 0 022445555665554 44788889999999999999999999999999999999999998
Q ss_pred eEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHH-HHHhhhCCCcEEEEeecc----CCCccccccccC
Q 006403 181 FRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLA-FKIFVCEQVDVAIIEVGL----GGEKDSTNVIKE 255 (646)
Q Consensus 181 I~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA-~~~F~~~~vD~aVlEvG~----GGr~D~TNvi~~ 255 (646)
..+++..++. .+++|+.+++++ |..|.++++|++|||+|+ +||+|.+|
T Consensus 145 ~~i~~~~~~~-----------------------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~---- 197 (498)
T 1e8c_A 145 NGLLGKVIPT-----------------------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK---- 197 (498)
T ss_dssp EEETTCCBCC-----------------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----
T ss_pred cccCCeeeec-----------------------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----
Confidence 6677655431 134455555554 778889999999999997 57899865
Q ss_pred CcEEEEccCCcchhhhcCCCHHHHHHHHhcccCC--CCcEEEeCCchHHHHHHHHHHHhc-------C----c---cEEE
Q 006403 256 PVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKP--QIPAFTVPQLSEAMSVLQDRALEL-------M----V---PLEV 319 (646)
Q Consensus 256 P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~--g~~av~~~q~~~~~~vl~~~a~~~-------~----~---~l~~ 319 (646)
|+++|||||+.||+|+|| |+|+|+++|++||+. +.++|+|.|++....++... ... + + ++..
T Consensus 198 p~vaViTNI~~DHld~~g-t~e~ia~aK~~i~~~~~~~~~V~n~dd~~~~~~~~~~-~~~~~~v~~~g~~~~~~~~d~~~ 275 (498)
T 1e8c_A 198 FAASVFTNLSRDHLDYHG-DMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKL-PDAVAVSMEDHINPNCHGRWLKA 275 (498)
T ss_dssp CSEEEECCCCSCCHHHHS-SHHHHHHHHHHHHHTSBCCEEEEETTSHHHHHHHTTC-TTCEEEESSSCCCTTTCSEEEEE
T ss_pred CCEEEEeCCChhhhhccC-CHHHHHHHHHHHhccCCCCeEEEECCCHHHHHHHHhh-hccCCcEEEEecCCCCCcCCEEE
Confidence 799999999999999999 999999999999985 67899999998766654321 111 1 1 2221
Q ss_pred ec--------ccccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-C
Q 006403 320 AA--------PLDIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-L 387 (646)
Q Consensus 320 ~~--------~~~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~ 387 (646)
.. .|... ....+.++++|.||++|+++|++++..+ |. .++.|.+||++++ |
T Consensus 276 ~~~~~~~~g~~f~~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~l----Gi-------------~~~~i~~~L~~~~~~ 338 (498)
T 1e8c_A 276 TEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL----GY-------------PLADLLKTAARLQPV 338 (498)
T ss_dssp EEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHT----TC-------------CHHHHHHHGGGCCCC
T ss_pred EEEEEcCCceEEEEEECCceEEEEecCCcHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCC
Confidence 10 01110 0114678999999999999999999887 62 3788999999998 9
Q ss_pred CCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccc
Q 006403 388 LGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGY 467 (646)
Q Consensus 388 pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (646)
|||||++... +++.||+||||||+||++++++|+..
T Consensus 339 ~gR~e~v~~~--------------~~~~vi~DyahnP~s~~a~l~~l~~~------------------------------ 374 (498)
T 1e8c_A 339 CGRMEVFTAP--------------GKPTVVVDYAHTPDALEKALQAARLH------------------------------ 374 (498)
T ss_dssp TTSSEEECCT--------------TSCEEEEECCCSHHHHHHHHHHHHHT------------------------------
T ss_pred CCceEEEEcC--------------CCCEEEEECCCCHHHHHHHHHHHHhh------------------------------
Confidence 9999999754 24689999999999999999988754
Q ss_pred cccccccccccccCccEEEEEecCCCCChh--hhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 468 IGHKMEKTKHANKISKQILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 468 ~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~--~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
..+|+|+||||+++||.. .++..+... .+|.++++++.
T Consensus 375 ------------~~~r~i~V~G~g~dr~~~~~~~~~~~~~~------~~d~vi~~~~~ 414 (498)
T 1e8c_A 375 ------------CAGKLWCVFGCGGDRDKGKRPLMGAIAEE------FADVAVVTDDN 414 (498)
T ss_dssp ------------CSSCEEEEECCCSSSCSTHHHHHHHHHHH------HCSEEEECCSC
T ss_pred ------------CCCCEEEEECCCCCcchhHHHHHHHHHHh------CCCEEEEcCCC
Confidence 124789999999999874 455554431 36777777543
No 7
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=7.6e-51 Score=457.23 Aligned_cols=413 Identities=19% Similarity=0.189 Sum_probs=294.9
Q ss_pred ccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhhh
Q 006403 25 SVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQK 104 (646)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~~ 104 (646)
.+....|||...|+.-|++++|.|+.+.. | +.++++++|..+++. . .+. ..++. . .
T Consensus 62 i~~v~~DSR~v~~g~lFval~G~~~dGh~-----f---i~~A~~~GA~avv~~---~------~~~---~~~~~-~---~ 117 (535)
T 2wtz_A 62 VTGVTLRAQDVSPGDLFAALTGSTTHGAR-----H---VGDAIARGAVAVLTD---P------AGV---AEIAG-R---A 117 (535)
T ss_dssp CCEEESCGGGCCTTEEEEECBCSSCBGGG-----G---HHHHHHTTCCEEEEC---H------HHH---HHHCS-C---C
T ss_pred eeeEEecCCcCCCCCEEEEeccccccHHH-----H---HHHHHHCCCeEEEEe---c------Ccc---ccccc-C---C
Confidence 46678899999999999999999999988 8 999999999988871 1 000 00100 0 0
Q ss_pred cCCCccccccCCChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCcccccccee
Q 006403 105 RGEQSHIAGRYGKLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERF 181 (646)
Q Consensus 105 ~~~~~~~~~~~~~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI 181 (646)
+.+ . -.+++++++|..|. +++|+.++++||||||||||||++||++||+++|+++|+++| +++
T Consensus 118 -~~~--~----i~v~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs-------~~~ 183 (535)
T 2wtz_A 118 -AVP--V----LVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGT-------IGI 183 (535)
T ss_dssp -SSC--E----EECSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESS-------SCE
T ss_pred -Cce--E----EEECCHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECC-------cce
Confidence 000 0 12334455555553 457888899999999999999999999999999999999998 458
Q ss_pred EECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHH-HHhhhCCCcEEEEeecc----CCCccccccccCC
Q 006403 182 RINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAF-KIFVCEQVDVAIIEVGL----GGEKDSTNVIKEP 256 (646)
Q Consensus 182 ~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~-~~F~~~~vD~aVlEvG~----GGr~D~TNvi~~P 256 (646)
.+||..++.. ++.|+.+++.++ ..|.++++|++|||+|+ +||+|++ +|
T Consensus 184 ~i~~~~~~~~-----------------------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p 236 (535)
T 2wtz_A 184 RVGGADLPSA-----------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RF 236 (535)
T ss_dssp EETTEEECCS-----------------------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CE
T ss_pred eECCEecccC-----------------------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----Cc
Confidence 9999887642 233455666554 57788999999999997 5888885 47
Q ss_pred cEEEEccCCcchhhhcCCCHHHHHHHHhcccCCC-----CcEEEeCCchHHHHHHHHHHHhc-------Cc-cEEEe---
Q 006403 257 VVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ-----IPAFTVPQLSEAMSVLQDRALEL-------MV-PLEVA--- 320 (646)
Q Consensus 257 ~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g-----~~av~~~q~~~~~~vl~~~a~~~-------~~-~l~~~--- 320 (646)
+++|||||+.||+|+|| |+|+|+++|++||++. ..+|+|.||+....++.. +... .+ +++..
T Consensus 237 ~vaViTNI~~DHld~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~-~~~v~~~g~~~~~~d~~~~~i~ 314 (535)
T 2wtz_A 237 AVGAFTNLSRDHLDFHP-SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAAR-AADAITVSAADRPAHWRATDVA 314 (535)
T ss_dssp EEEEECCCCSCCTTTSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHH-HSSCEEEESSSSCCSEEEEEEE
T ss_pred CEEEEcCCChHHhhhcC-CHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHh-cCCEEEEecCCCcCcEEEEEEE
Confidence 99999999999999999 9999999999999844 468999999876665543 2110 01 22110
Q ss_pred -c-c----cccc---ch-hcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCc
Q 006403 321 -A-P----LDIE---KL-KRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGR 390 (646)
Q Consensus 321 -~-~----~~~~---~~-~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR 390 (646)
. . |... .. ..+.++++|.||++|+++|++++..+ |. .+++|.+||++++||||
T Consensus 315 ~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----Gi-------------~~~~i~~~L~~~~~~gR 377 (535)
T 2wtz_A 315 PTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTV----GV-------------SPEQAVPGLREIRVPGR 377 (535)
T ss_dssp EETTTEEEEEEECTTSCEEEEEESCCSHHHHHHHHHHHHHHHHT----TC-------------CHHHHHHHHTTCCCTTS
T ss_pred EcCCCCeEEEEEeCCceEEEEEeCCCCHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCc
Confidence 0 0 1110 00 24678999999999999999999887 62 37889999999999999
Q ss_pred EEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccc
Q 006403 391 AQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGH 470 (646)
Q Consensus 391 ~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (646)
||++... ++..+|+||||||+|+++++++|+ .
T Consensus 378 ~e~v~~~--------------~~~~viiDyahNP~s~~aal~~l~-~--------------------------------- 409 (535)
T 2wtz_A 378 LEQIDRG--------------QGFLALVDYAHKPEALRSVLTTLA-H--------------------------------- 409 (535)
T ss_dssp SEECCSS--------------CSSEEEEECCCSHHHHHHHHHTTC-C---------------------------------
T ss_pred eEEEEcC--------------CCcEEEEECCCCHHHHHHHHHHhh-C---------------------------------
Confidence 9998654 246799999999999999999775 3
Q ss_pred ccccccccccCccEEEEEecCCCCChh--hhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHH
Q 006403 471 KMEKTKHANKISKQILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQ 548 (646)
Q Consensus 471 ~~~~~~~~~~~~~~ilvFg~~~dRd~~--~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q 548 (646)
+.+|+|+||||+++||.. .++..+... .+|.++++++.. + .+...
T Consensus 410 ---------~~~r~i~V~G~~gdr~~~~~~~~~~~a~~------~~d~vi~~~~~~---------r----~e~~~----- 456 (535)
T 2wtz_A 410 ---------PDRRLAVVFGAGGDRDPGKRAPMGRIAAQ------LADLVVVTDDNP---------R----DEDPT----- 456 (535)
T ss_dssp ---------SSSCEEEEECCCTTSCGGGHHHHHHHHHH------HCSEEEECCSCC---------T----TSCHH-----
T ss_pred ---------CCCcEEEEECCCCccchhhHHHHHHHHHh------cCCEEEEcCCCC---------C----CCCHH-----
Confidence 124789999999999875 355554421 367777775431 0 01010
Q ss_pred HHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceE
Q 006403 549 FSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQV 628 (646)
Q Consensus 549 ~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~V 628 (646)
.+.+.+..+.... + . ...+.++++.++|++++.+.++. .--|
T Consensus 457 ----~i~~~i~~g~~~~-------------~---------~--------~~~~~~~~d~~~Ai~~a~~~a~~----gD~V 498 (535)
T 2wtz_A 457 ----AIRREILAGAAEV-------------G---------G--------DAQVVEIADRRDAIRHAVAWARP----GDVV 498 (535)
T ss_dssp ----HHHHHHHHHHTTC-------------C------------------CCEEEECCSHHHHHHHHHHHCCT----TCEE
T ss_pred ----HHHHHHHhhhhhc-------------C---------C--------CCcEEEECCHHHHHHHHHHhCCC----CCEE
Confidence 1111221100000 0 0 01356788999999999887643 2369
Q ss_pred EEeCchhcHHhH
Q 006403 629 LVTGSLHLVGDV 640 (646)
Q Consensus 629 LVTGSlhLVG~v 640 (646)
||+||.|.++..
T Consensus 499 Lv~GsGhe~~q~ 510 (535)
T 2wtz_A 499 LIAGKGHETGQR 510 (535)
T ss_dssp EEESCTTCCCEE
T ss_pred EEEeCCCcceEE
Confidence 999999998654
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.6e-47 Score=418.85 Aligned_cols=335 Identities=20% Similarity=0.230 Sum_probs=241.5
Q ss_pred cccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhh
Q 006403 24 FSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQ 103 (646)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~ 103 (646)
......+|||...|+.-|++++|.|+.+.. | ..++++++|..+.. +...|. ..
T Consensus 23 ~i~~i~~Dsr~v~~g~lf~al~G~~~dgh~-----f---~~~a~~~Ga~~vv~---~~~~~~------------~~---- 75 (452)
T 1gg4_A 23 TLDAVTTDTRKLTPGCLFVALKGERFDAHD-----F---ADQAKAGGAGALLV---SRPLDI------------DL---- 75 (452)
T ss_dssp EESCEESCGGGCCTTCEEECCBCSSCBTTT-----T---HHHHHHTTCCEEEE---SSCCSC------------SS----
T ss_pred eEEEEEEeCCCcCCCcEEEEeCCCCCCHHH-----H---HHHHHHcCCEEEEE---CCCcCC------------CC----
Confidence 346788999999999999999999998888 8 88999999998887 222110 00
Q ss_pred hcCCCccccccCCChHHHHHHHHHhCCCC-cccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeE
Q 006403 104 KRGEQSHIAGRYGKLQRMSMYLKILGLED-RIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFR 182 (646)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~-p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~ 182 (646)
+ ...+++++++|..|+... ...++++||||||||||||++|+++||+++| +++ +|+ . ++++||
T Consensus 76 ----p------~i~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~-g--~~n~~i- 139 (452)
T 1gg4_A 76 ----P------QLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA-G--NLNNDI- 139 (452)
T ss_dssp ----C------EEEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC-T--TCCSTT-
T ss_pred ----C------EEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc-c--cccCCc-
Confidence 0 023567788888887321 1135789999999999999999999999999 565 543 3 556555
Q ss_pred ECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCcc---ccccccCCcEE
Q 006403 183 INGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKD---STNVIKEPVVC 259 (646)
Q Consensus 183 InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D---~TNvi~~P~Va 259 (646)
|.| +++|+ .++++|++|+|+|++++.| .++++ +|+++
T Consensus 140 --g~p---------------------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~va 179 (452)
T 1gg4_A 140 --GVP---------------------------MTLLR----------LTPEYDYAVIELGANHQGEIAWTVSLT-RPEAA 179 (452)
T ss_dssp --HHH---------------------------HHHTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEE
T ss_pred --chh---------------------------HHHHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEE
Confidence 111 01111 2568999999999999988 78876 79999
Q ss_pred EEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc------c-------
Q 006403 260 GVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP------L------- 323 (646)
Q Consensus 260 VITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~------~------- 323 (646)
|||||+.||+|+|| |+|+|+++|++||+ ++.++|+|.||+....+++ +.. +++++.++. +
T Consensus 180 viTNI~~DHld~~g-t~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~--~~~-~~~~~~~g~~~~~~d~~~~~~~~ 255 (452)
T 1gg4_A 180 LVNNLAAAHLEGFG-SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS--VIG-SRKVWRFSPNAANSDFTATNIHV 255 (452)
T ss_dssp EECCCC---------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHH--HHT-TSEEEEECSSCTTCSBEEEEEEE
T ss_pred EECCCChHHhhhcC-CHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHH--hhc-CCCEEEEeCCCCCCcEEEEEEEE
Confidence 99999999999999 99999999999998 6788999999987665432 222 334443321 1
Q ss_pred -------ccc---chhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEE
Q 006403 324 -------DIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQ 392 (646)
Q Consensus 324 -------~~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E 392 (646)
... ....+.++++|.||++|+++|++++..+ |. .++.|.+||++++ ||||||
T Consensus 256 ~~~g~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l----gi-------------~~~~i~~~L~~~~~~~gR~e 318 (452)
T 1gg4_A 256 TSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSV----GA-------------TLDAIKAGLANLKAVPGRLF 318 (452)
T ss_dssp CSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHT----TC-------------CHHHHHHHHTTCCCCTTSSE
T ss_pred cCCceEEEEEECCCEEEEEeCCCcHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCCCce
Confidence 000 0014678999999999999999999887 62 3788999999997 999999
Q ss_pred EEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccc
Q 006403 393 IVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHK 471 (646)
Q Consensus 393 ~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (646)
++... +++.||+| |||||+|+++++++++..
T Consensus 319 ~~~~~--------------~~~~vidDsyahnp~s~~~~l~~l~~~---------------------------------- 350 (452)
T 1gg4_A 319 PIQLA--------------ENQLLLDDSYNANVGSMTAAVQVLAEM---------------------------------- 350 (452)
T ss_dssp EEEEE--------------TTEEEEECCSCCCHHHHHHHHHHHHHS----------------------------------
T ss_pred EEECC--------------CCcEEEEeCCCCCHHHHHHHHHHHHhc----------------------------------
Confidence 99764 24789999 999999999999988653
Q ss_pred cccccccccCccEEEEEecC---CCCChhhhHHHHHHHhhhcCCCccEEEEeCC
Q 006403 472 MEKTKHANKISKQILLFNCM---EARHPQVLLPRLVSTCASSGTHFSKALFVPS 522 (646)
Q Consensus 472 ~~~~~~~~~~~~~ilvFg~~---~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~ 522 (646)
+ +++|+||||+ ++++. ...+.+.+.+.+. .+|.+|++..
T Consensus 351 --------~-~~~i~V~G~~~e~g~~~~-~~~~~~~~~~~~~--~~d~vi~~g~ 392 (452)
T 1gg4_A 351 --------P-GYRVLVVGDMAELGAESE-ACHVQVGEAAKAA--GIDRVLSVGK 392 (452)
T ss_dssp --------S-SEEEEEECCCCCCTTHHH-HHHHHHHHHHHHH--TCSEEEEESS
T ss_pred --------c-CCEEEEECCccccCChhH-HHHHHHHHHHHHc--CCCEEEEECc
Confidence 2 4789999998 44432 2334444444321 4788888753
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=8.3e-47 Score=415.84 Aligned_cols=335 Identities=13% Similarity=0.093 Sum_probs=243.9
Q ss_pred cccccccccccCCcccccccCCCCccccccccchhhhhhhHHHHhccccccccchhhcCCCCCCcHHHHHHHHHhhhhhh
Q 006403 24 FSVRKKWSFTSLPASLNIHDLTGNNDLHQMTKGLRYAKMSSQVKGKTVSNALTTEYEENLPLSSSYENAMQALSSLITRQ 103 (646)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~A~~~L~sl~~~~ 103 (646)
...+..+|||...|+.-|++++|. +.+.. | +.++++++|..+.. +...| ...
T Consensus 25 ~i~~i~~Dsr~v~~g~lF~al~G~-~dgh~-----~---~~~a~~~Ga~~vv~---~~~~~-------------~~p--- 76 (454)
T 2am1_A 25 QLEKAEFDSRLIGTGDLFVPLKGA-RDGHD-----F---IETAFENGAAVTLS---EKEVS-------------NHP--- 76 (454)
T ss_dssp BCCCEESCGGGCCTTCEECCCBSS-SBGGG-----G---HHHHHHHTCSEEEE---SSCCC-------------SSC---
T ss_pred eeeeEEEeCCCCCCCCEEEEccCC-cchHH-----H---HHHHHHCCCEEEEE---CCCCC-------------CCC---
Confidence 347789999999999999999999 77777 8 88899999988877 22111 000
Q ss_pred hcCCCccccccCCChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeE
Q 006403 104 KRGEQSHIAGRYGKLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFR 182 (646)
Q Consensus 104 ~~~~~~~~~~~~~~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~ 182 (646)
. -.+++++++|..|+.. ....++++||||||||||||++|+++||+++|. .++||| ++++||.
T Consensus 77 ------~-----i~v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~---~~~s~g--~~n~~ig 140 (454)
T 2am1_A 77 ------Y-----ILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK---TYKTQG--NYNNEIG 140 (454)
T ss_dssp ------E-----EECSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC---EEECCT--TCCSTTH
T ss_pred ------E-----EEECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC---EeecCC--ccCcccc
Confidence 0 1234566677776621 101167899999999999999999999999995 378998 6666651
Q ss_pred ECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCcc---ccccccCCcEE
Q 006403 183 INGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKD---STNVIKEPVVC 259 (646)
Q Consensus 183 InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D---~TNvi~~P~Va 259 (646)
.| +++|+ .++++|++|||+|++|+.| .+|++ +|+++
T Consensus 141 ---~p---------------------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~va 179 (454)
T 2am1_A 141 ---LP---------------------------YTVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTA 179 (454)
T ss_dssp ---HH---------------------------HHHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEE
T ss_pred ---hH---------------------------HHHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEE
Confidence 11 11121 2568999999999999988 88876 79999
Q ss_pred EEccCCcchhhhcCCCHHHHHHHHhcccC---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-----c---cc---
Q 006403 260 GVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-----L---DI--- 325 (646)
Q Consensus 260 VITnIg~DHld~LG~TleeIA~~KagIfk---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-----~---~~--- 325 (646)
|||||+.||+|+|| |+|+|+++|++||+ ++.++|+|.|| ...+ .+.. +++++.++. + ..
T Consensus 180 viTNi~~DHld~~g-t~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~----~~~~-~~~~~~~g~~~~~d~~~i~~~~~ 252 (454)
T 2am1_A 180 IVTLVGEAHLAFFK-DRSEIAKGKMQIADGMASGSLLLAPADP-IVED----YLPI-DKKVVRFGQGAELEITDLVERKD 252 (454)
T ss_dssp EECCCCCSSCTTCC-CHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGG----GCCS-SSEEEEESTTSSBCEEEEEECSS
T ss_pred EEcCCchHhhhhcC-CHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHH----HHhc-CCcEEEEeCCCCCceeeeEEeCC
Confidence 99999999999999 99999999999998 57789999887 5432 2222 334444331 1 00
Q ss_pred c---chh----cccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEecc
Q 006403 326 E---KLK----RLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDI 397 (646)
Q Consensus 326 ~---~~~----~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~ 397 (646)
. .+. .+.++++|.||++|+++|++++..+ |. .++++.+||++++ ||||||++...
T Consensus 253 ~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l----gi-------------~~~~i~~~L~~~~~~~gR~e~~~~~ 315 (454)
T 2am1_A 253 SLTFKANFLEQALDLPVTGKYNATNAMIASYVALQE----GV-------------SEEQIRLAFQHLELTRNRTEWKKAA 315 (454)
T ss_dssp CEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHT----TC-------------CHHHHHHHGGGCCCCCCCSCEECCT
T ss_pred ceEEEEEecCcEEEecCCCHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCccCCeeEEECC
Confidence 0 011 4678999999999999999999887 62 3788999999998 99999999753
Q ss_pred CCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhcccccccccccc
Q 006403 398 SLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTK 476 (646)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (646)
++..||.| |||||+|+++++++++... .
T Consensus 316 --------------~~~~iiDDsyahnp~s~~~~l~~l~~~~-~------------------------------------ 344 (454)
T 2am1_A 316 --------------NGADILSDVYNANPTAMKLILETFSAIP-A------------------------------------ 344 (454)
T ss_dssp --------------TTCEEEEECSCCSHHHHHHHHHHHTTSC-C------------------------------------
T ss_pred --------------CCeEEEEeCCCCCHHHHHHHHHHHHhcc-c------------------------------------
Confidence 24566666 8999999999999886531 0
Q ss_pred ccccCccEEEEEecC---CCCChhhhHHHHHHHhhhcCCCccEEEEeCCC
Q 006403 477 HANKISKQILLFNCM---EARHPQVLLPRLVSTCASSGTHFSKALFVPSV 523 (646)
Q Consensus 477 ~~~~~~~~ilvFg~~---~dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~ 523 (646)
...+|+|+|||++ ++| .....+.+.+.+.+ ..+|.+|++.+.
T Consensus 345 --~~~~~~i~V~G~~~e~G~~-~~~~~~~~~~~~~~--~~~d~vi~~g~~ 389 (454)
T 2am1_A 345 --NEGGKKIAVLADMKELGDQ-SVQLHNQMILSLSP--DVLDIVIFYGED 389 (454)
T ss_dssp --CSSCEEEEEEECCCCCCTT-HHHHHHHGGGGCCT--TTCSEEEEEEST
T ss_pred --ccCCCEEEEECCchhcCcH-HHHHHHHHHHHHHh--cCCCEEEEECcC
Confidence 0015789999997 333 33344445444422 247888887643
No 10
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=8.6e-42 Score=378.09 Aligned_cols=323 Identities=17% Similarity=0.157 Sum_probs=227.2
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|||||||||||||+|+++||+++|++ || +.++|...+... +
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~----------------------~- 161 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLD------PT-------FVNGGLVKSAGK----------------------N- 161 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTE----------------------E-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCccccccc----------------------c-
Confidence 48999999999999999999999999986 33 345555442110 0
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhccc---CCCCcE
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF---KPQIPA 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIf---k~g~~a 293 (646)
....++|++|+|+| ++|+++...+|+++|||||++||+|+||+|+|+|+++|+.|| +++.++
T Consensus 162 ------------~~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 162 ------------AHLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp ------------EECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ------------cccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 01247899999995 778888866899999999999999999779999999988876 567789
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEecc-------------------cccc----chhcccccCcchhhHhhHHHHHHH
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDIE----KLKRLELSLSGDHQLVNAGLAVSL 350 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~----~~~~v~l~L~G~hq~~NAalAia~ 350 (646)
|+|.||+.+.+++.+. +++++.++. |... ....+.++++|.||++|+++|+++
T Consensus 227 V~n~dd~~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~ 302 (475)
T 1p3d_A 227 VMCADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV 302 (475)
T ss_dssp EEETTCHHHHHHHHHH----CSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHhc----CCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHH
Confidence 9999998776655432 233333210 1110 001467899999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHH
Q 006403 351 SECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEA 429 (646)
Q Consensus 351 a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a 429 (646)
+..+ |. .++.|.+||++|+ ||||||++...+. ..+++.||+||||||+++++
T Consensus 303 ~~~l----gi-------------~~~~i~~~L~~f~~~~gR~e~v~~~~~----------~~~~~~vi~DyaHnp~~~~a 355 (475)
T 1p3d_A 303 AKEE----GI-------------ANEAILEALADFQGAGRRFDQLGEFIR----------PNGKVRLVDDYGHHPTEVGV 355 (475)
T ss_dssp HHHT----TC-------------CHHHHHHHHHTCCCBTTSSEEEEEEEE----------TTEEEEEEEECCCSHHHHHH
T ss_pred HHHc----CC-------------CHHHHHHHHHhCCCCCCCCEEEecccc----------cCCCcEEEEeCCCCHHHHHH
Confidence 9887 62 3788999999999 9999999975200 00147899999999999999
Q ss_pred HHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCC-CCChhhhHHHHHHHhh
Q 006403 430 CAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCME-ARHPQVLLPRLVSTCA 508 (646)
Q Consensus 430 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~-dRd~~~ll~~L~~~~~ 508 (646)
+++++++.. +..|+++|||+++ +|| +.+...+.+.+.
T Consensus 356 ~l~al~~~~-----------------------------------------~~~~i~~v~g~~~~~r~-~~~~~~~~~~~~ 393 (475)
T 1p3d_A 356 TIKAAREGW-----------------------------------------GDKRIVMIFQPHRYSRT-RDLFDDFVQVLS 393 (475)
T ss_dssp HHHHHHHHH-----------------------------------------CSSCEEEEECCBCHHHH-HHTHHHHHHHHT
T ss_pred HHHHHHhhc-----------------------------------------CCCeEEEEECCCCCccH-HHHHHHHHHHHH
Confidence 999987642 1247899999754 333 234455655442
Q ss_pred hcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCC
Q 006403 509 SSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDA 588 (646)
Q Consensus 509 ~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (646)
.+|.+|+++... . +..... .. . ...+++.+.+.. .
T Consensus 394 ----~~d~vi~t~~~~-~-----~e~~~~-g~-----~-~~~l~~~~~~~~--~-------------------------- 428 (475)
T 1p3d_A 394 ----QVDALIMLDVYA-A-----GEAPIV-GA-----D-SKSLCRSIRNLG--K-------------------------- 428 (475)
T ss_dssp ----TSSEEEEECCBC-T-----TCCCCT-TC-----S-HHHHHHHHHHHT--S--------------------------
T ss_pred ----hCCEEEEcCCcC-C-----CCCCCC-CC-----C-HHHHHHHHHhhC--C--------------------------
Confidence 478888886541 1 111100 00 0 122333333210 0
Q ss_pred CCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEe--CchhcHHhHHh
Q 006403 589 PLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVT--GSLHLVGDVLK 642 (646)
Q Consensus 589 ~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVT--GSlhLVG~vl~ 642 (646)
..+.++++.++|++++.+.++. .--|||+ ||||+||+.|.
T Consensus 429 ----------~~~~~~~~~~~ai~~a~~~a~~----gd~VLv~G~Gs~~~v~~~l~ 470 (475)
T 1p3d_A 429 ----------VDPILVSDTSQLGDVLDQIIQD----GDLILAQGAGSVSKISRGLA 470 (475)
T ss_dssp ----------CCCEEESCGGGHHHHHHHHCCT----TCEEEEECSSTHHHHHHHHH
T ss_pred ----------CceEEECCHHHHHHHHHHhCCC----CCEEEEECCCCHHHHHHHHH
Confidence 0245678999999999887653 2258898 99999999873
No 11
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.8e-41 Score=377.02 Aligned_cols=341 Identities=19% Similarity=0.197 Sum_probs=229.7
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHH
Q 006403 118 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 197 (646)
Q Consensus 118 l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f 197 (646)
+.++..+.+.++ ..++|||||||||||||+|+++||+++|++ || +.++|...+...
T Consensus 106 l~~~~~l~~~~~------~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~----- 161 (491)
T 2f00_A 106 IRRAEMLAELMR------FRHGIAIAGTHGKTTTTAMVSSIYAEAGLD------PT-------FVNGGLVKAAGV----- 161 (491)
T ss_dssp EEHHHHHHHHHT------TSEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTE-----
T ss_pred EEHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCeeccccc-----
Confidence 445544444443 248999999999999999999999999986 33 345555442110
Q ss_pred HHHHHHhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHH
Q 006403 198 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLN 277 (646)
Q Consensus 198 ~~v~~~l~~~~~~~~~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~Tle 277 (646)
+ ....++|++|+|+| ++|+++...+|+++|||||+.||+|+||+|+|
T Consensus 162 -----------------~-------------~~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e 208 (491)
T 2f00_A 162 -----------------H-------------ARLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFE 208 (491)
T ss_dssp -----------------E-------------EECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHH
T ss_pred -----------------c-------------ccCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHH
Confidence 0 01247899999995 77888886689999999999999999977999
Q ss_pred HHHHHHhccc---CCCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc-------------------cccc--c--hhcc
Q 006403 278 DIAFHKAGIF---KPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDIE--K--LKRL 331 (646)
Q Consensus 278 eIA~~KagIf---k~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~--~--~~~v 331 (646)
+|+++|+.|| +++.++|+|.||+.+..++. +.+++++.++. |... . ...+
T Consensus 209 ~ia~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (491)
T 2f00_A 209 NLKQTFINFLHNLPFYGRAVMCVDDPVIRELLP----RVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRV 284 (491)
T ss_dssp HHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGG----GCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH----hcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEE
Confidence 9999998877 46778999999987655443 22334433320 1110 0 0146
Q ss_pred cccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccC
Q 006403 332 ELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENS 410 (646)
Q Consensus 332 ~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~ 410 (646)
.++++|.||++|+++|++++..+ |. .++.|.+||++|+ ||||||++.....+ .+..
T Consensus 285 ~l~l~G~hn~~NalaAia~a~~l----gi-------------~~~~i~~~L~~f~~~~gR~e~v~~~~~~------~~~~ 341 (491)
T 2f00_A 285 TLNAPGRHNALNAAAAVAVATEE----GI-------------DDEAILRALESFQGTGRRFDFLGEFPLE------PVNG 341 (491)
T ss_dssp EESSCSHHHHHHHHHHHHHHHHH----TC-------------CHHHHHHHHHTCCCBTTSSEEEEEEESS------SSSS
T ss_pred EEccchHHHHHHHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCCCCEEEcccccc------cccc
Confidence 78999999999999999999988 62 3788999999999 99999999752000 0000
Q ss_pred CCc-eEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEe
Q 006403 411 SGE-LIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFN 489 (646)
Q Consensus 411 ~~~-~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg 489 (646)
+++ +.||+||||||++++++++++++.. +..|+++|||
T Consensus 342 ~~g~~~vi~DyaHnp~~~~a~l~al~~~~-----------------------------------------~~~~i~~v~g 380 (491)
T 2f00_A 342 KSGTAMLVDDYGHHPTEVDATIKAARAGW-----------------------------------------PDKNLVMLFQ 380 (491)
T ss_dssp CSSEEEEEEECCCSHHHHHHHHHHHHTTC-----------------------------------------CSSEEEEEEC
T ss_pred CCCcEEEEEeCCCCHHHHHHHHHHHHhhc-----------------------------------------CCCeEEEEEC
Confidence 025 7899999999999999999887541 2247899999
Q ss_pred cCC-CCChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccc
Q 006403 490 CME-ARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEK 568 (646)
Q Consensus 490 ~~~-dRd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~ 568 (646)
+++ +|+ +.+...+.+.+. .+|.+|+++... . +..... .... ..+++.+.+. +
T Consensus 381 ~~~~~r~-k~~~~~~~~~~~----~~d~vilt~~~~-~-----~e~~~~-g~~~------~~l~~~~~~~--~------- 433 (491)
T 2f00_A 381 PHRFTRT-RDLYDDFANVLT----QVDTLLMLEVYP-A-----GEAPIP-GADS------RSLCRTIRGR--G------- 433 (491)
T ss_dssp CBCHHHH-TTTHHHHHHHHT----TSSEEEECCCBC-S-----SSCCCT-TSSH------HHHTTC--------------
T ss_pred CCCCcch-HHHHHHHHHHHH----hCCEEEEcCCcC-C-----CCCCCC-CCCH------HHHHHHHHhh--C-------
Confidence 753 232 233445555442 478888876541 1 111000 0000 1111111110 0
Q ss_pred cccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEe--CchhcHHhHHhh
Q 006403 569 SSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVT--GSLHLVGDVLKL 643 (646)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVT--GSlhLVG~vl~~ 643 (646)
...+.++++.++|++++.+.++. .--|||+ ||||+||++|.-
T Consensus 434 -----------------------------~~~~~~~~~~~~ai~~a~~~a~~----gd~VLv~gaGsl~~v~~~l~~ 477 (491)
T 2f00_A 434 -----------------------------KIDPILVPDPARVAEMLAPVLTG----NDLILVQGAGNIGKIARSLAE 477 (491)
T ss_dssp -------------------------------CCEECCCSSCCHHHHGGGCCS----EEEEEEECSTTHHHHHHHHHH
T ss_pred -----------------------------CCceEEeCCHHHHHHHHHHhCCC----CCEEEEECCCCHHHHHHHHHH
Confidence 00245678899999998876642 2358888 999999999864
No 12
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.1e-40 Score=369.16 Aligned_cols=256 Identities=15% Similarity=0.130 Sum_probs=188.9
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCcccccc-ceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCC
Q 006403 136 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVR-ERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPM 214 (646)
Q Consensus 136 ~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~-ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ 214 (646)
++++||||||||||||++|+++||+++|+++|+|++|++.+++ +|++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 4589999999999999999999999999999999999988877 776531
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEE
Q 006403 215 PPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAF 294 (646)
Q Consensus 215 ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av 294 (646)
+.| +|+|+|+. |.++...+|+++|||||+.||+|+||+|+|+|+++|..+++....+|
T Consensus 163 ------------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V 220 (469)
T 1j6u_A 163 ------------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVV 220 (469)
T ss_dssp ------------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEE
T ss_pred ------------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEE
Confidence 236 89999664 67776668999999999999999999779999999998876433678
Q ss_pred EeCCchHHHHHHHHHHHhcC---ccEEE----ec-c---ccc--c--chhcccccCcchhhHhhHHHHHHHHHHHHHhcC
Q 006403 295 TVPQLSEAMSVLQDRALELM---VPLEV----AA-P---LDI--E--KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTG 359 (646)
Q Consensus 295 ~~~q~~~~~~vl~~~a~~~~---~~l~~----~~-~---~~~--~--~~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G 359 (646)
++.||+.+.++ .....+ +++.. .. . |.. . .+..+.++++|.||++|+++|++++..+ |
T Consensus 221 ~n~dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g 293 (469)
T 1j6u_A 221 TFAEDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL----G 293 (469)
T ss_dssp EETTCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT----T
T ss_pred EECCChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc----C
Confidence 88888764321 000011 12211 00 0 111 0 1124678999999999999999999887 6
Q ss_pred CCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEE--eccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHh
Q 006403 360 NWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIV--YDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSS 436 (646)
Q Consensus 360 ~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v--~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~ 436 (646)
..++.+.+||++|+ ||||||++ ... +++.||+||||||++++++++++++
T Consensus 294 -------------i~~~~i~~~L~~f~g~~gR~e~v~~~~~--------------~g~~vi~D~aHnp~~~~a~l~al~~ 346 (469)
T 1j6u_A 294 -------------YDLAPVLEALEEFRGVHRRFSIAFHDPE--------------TNIYVIDDYAHTPDEIRNLLQTAKE 346 (469)
T ss_dssp -------------CCHHHHHHHHHHCCCCTTSSEEEEEETT--------------TTEEEEEECCCSHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHhCCCCCCCcEEEccccc--------------CCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 23788999999999 99999999 443 2589999999999999999999875
Q ss_pred hhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCC-CCChhhhHHHHHHHhhhcCCCcc
Q 006403 437 VVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCME-ARHPQVLLPRLVSTCASSGTHFS 515 (646)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~-dRd~~~ll~~L~~~~~~~~~~fd 515 (646)
.. +..|.++||++.+ +|+. .+...|...+. .+|
T Consensus 347 ~~-----------------------------------------~~~~i~~I~g~g~~~r~~-~~~~~l~~~~~----~~d 380 (469)
T 1j6u_A 347 VF-----------------------------------------ENEKIVVIFQPHRYSRLE-REDGNFAKALQ----LAD 380 (469)
T ss_dssp HC-----------------------------------------SSSEEEEEECCBC---------CHHHHHHT----TSS
T ss_pred hc-----------------------------------------CCCcEEEEEcCCCCCccH-HHHHHHHHHHh----cCC
Confidence 31 1247899998643 3433 33344544432 478
Q ss_pred EEEEeCCC
Q 006403 516 KALFVPSV 523 (646)
Q Consensus 516 ~~if~~~~ 523 (646)
.+++++..
T Consensus 381 ~vil~~~~ 388 (469)
T 1j6u_A 381 EVVVTEVY 388 (469)
T ss_dssp EEEECCCB
T ss_pred EEEEcccC
Confidence 88888654
No 13
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=3.3e-41 Score=369.98 Aligned_cols=210 Identities=19% Similarity=0.220 Sum_probs=168.1
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++||||||||||||++|+++||+++|++++++++- |.|+++.
T Consensus 104 ~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~~------------------------- 146 (439)
T 2x5o_A 104 APIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALML------------------------- 146 (439)
T ss_dssp SCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHHH-------------------------
Confidence 589999999999999999999999999999988751 3333110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCCcEEEe
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 296 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~~av~~ 296 (646)
...+.|++|+|+|+ +++|.+|.+ +|+++|||||+.||+|+||+|+|+|+++|++||+++.++|+|
T Consensus 147 -------------~~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~n 211 (439)
T 2x5o_A 147 -------------LDDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVN 211 (439)
T ss_dssp -------------CCTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEEE
T ss_pred -------------hCCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEEe
Confidence 11346999999999 789999987 799999999999999999779999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEecc--------------ccc-c--c-hhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 006403 297 PQLSEAMSVLQDRALELMVPLEVAAP--------------LDI-E--K-LKRLELSLSGDHQLVNAGLAVSLSECWLRRT 358 (646)
Q Consensus 297 ~q~~~~~~vl~~~a~~~~~~l~~~~~--------------~~~-~--~-~~~v~l~L~G~hq~~NAalAia~a~~ll~~~ 358 (646)
.|++.+.+++.+ +++++.++. +.+ . . ...+.++++|.||++|+++|++++..+
T Consensus 212 ~dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l---- 282 (439)
T 2x5o_A 212 ADDALTMPIRGA-----DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA---- 282 (439)
T ss_dssp TTCGGGSCSCCC-----SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT----
T ss_pred CCCHHHHHHhhc-----CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc----
Confidence 999875443321 233333321 000 0 0 113578999999999999999999887
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHHHH
Q 006403 359 GNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 434 (646)
Q Consensus 359 G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~~~ 434 (646)
| ..+++|.+||++|+ ||||||++... +++.||+| |||||+|++++++++
T Consensus 283 g-------------i~~~~i~~~L~~f~~~~gR~e~~~~~--------------~~~~vi~Ds~a~np~a~~~al~~l 333 (439)
T 2x5o_A 283 G-------------LPRASSLKALTTFTGLPHRFEVVLEH--------------NGVRWINDSKATNVGSTEAALNGL 333 (439)
T ss_dssp T-------------CCHHHHHHHHHHCCCCTTSSEEEEEE--------------TTEEEEECTTCCSHHHHHHHHTTC
T ss_pred C-------------CCHHHHHHHHHhCCCCCCceEEEEEE--------------CCEEEEEeCCCCCHHHHHHHHHhC
Confidence 6 24788999999997 99999999764 25789999 899999999988743
No 14
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=5.7e-38 Score=349.50 Aligned_cols=326 Identities=18% Similarity=0.192 Sum_probs=221.8
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCCH
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 217 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 217 (646)
++|+||||||||||+.|+++||+++|++....+...+..+ |. +.
T Consensus 123 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~-------g~----------------------------~~- 166 (494)
T 4hv4_A 123 HGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAA-------GT----------------------------HA- 166 (494)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTT-------TE----------------------------EE-
T ss_pred CEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccc-------cc----------------------------cc-
Confidence 7999999999999999999999999986322211100000 00 00
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCC---CCcEE
Q 006403 218 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKP---QIPAF 294 (646)
Q Consensus 218 Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~---g~~av 294 (646)
.-.+.|++|+|+|.+ |.++...+|+++|||||+.||+|+||+|+|+|+.+|++||+. +..+|
T Consensus 167 ------------~~~~~d~~VlE~~e~---~~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V 231 (494)
T 4hv4_A 167 ------------RLGSSRYLIAEADES---DASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAV 231 (494)
T ss_dssp ------------ECCSSSEEEEECCCG---GGGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEE
T ss_pred ------------ccCCCcEEEEEcccc---ccccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEE
Confidence 113579999999754 445555589999999999999999977999999999999974 56789
Q ss_pred EeCCchHHHHHHHHHHHhcCccEEEecc-------------------cccc----chhcccccCcchhhHhhHHHHHHHH
Q 006403 295 TVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDIE----KLKRLELSLSGDHQLVNAGLAVSLS 351 (646)
Q Consensus 295 ~~~q~~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~----~~~~v~l~L~G~hq~~NAalAia~a 351 (646)
++.||+.+..+++ +..++++.++. |... ....+.++++|.||++|+++|++++
T Consensus 232 ~n~dd~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a 307 (494)
T 4hv4_A 232 MCIDDPVVRELLP----RVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAVA 307 (494)
T ss_dssp EETTSHHHHHHGG----GCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHH----hcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 9999987655443 23334333320 1000 0123678999999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCC-CceEEEEeCCCCHHHHHH
Q 006403 352 ECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSS-GELIFYLDGAHTAESMEA 429 (646)
Q Consensus 352 ~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~-~~~~vilDgAHNp~sl~a 429 (646)
..+ |. .++.|.+||++|+ ||||||++...+.. ....+ +++.||+||||||+++++
T Consensus 308 ~~l----gi-------------~~~~i~~~L~~f~g~~~R~e~v~~~~~~------~~~~~~~g~~vi~DyaHnp~~i~a 364 (494)
T 4hv4_A 308 TEE----GI-------------EDEDILRALVGFQGTGRRFDFLGNFPLA------PVNGKEGSAMLVDDYGHHPTEVDA 364 (494)
T ss_dssp HHH----TC-------------CHHHHHHHHHHCCCBTTSSEEEEEEESH------HHHSCSSEEEEEEECCCSHHHHHH
T ss_pred HHc----CC-------------CHHHHHHHHHhCCCCCCccEEeeecccc------ccccCCCCeEEEEeCCCCHHHHHH
Confidence 987 62 3788999999999 99999999752000 00000 158999999999999999
Q ss_pred HHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhHHHHHHHhhh
Q 006403 430 CAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCAS 509 (646)
Q Consensus 430 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dRd~~~ll~~L~~~~~~ 509 (646)
+++++++.. +..|+++||++..++....++..+...+.
T Consensus 365 ~l~al~~~~-----------------------------------------~~~rii~V~g~~~~~r~k~~~~~~~~~~~- 402 (494)
T 4hv4_A 365 TIKAARAGW-----------------------------------------PDKRIVMLFQPHRYTRTRDLYDDFANVLS- 402 (494)
T ss_dssp HHHHHHHHC-----------------------------------------TTSEEEEEECCBCHHHHHHTHHHHHHHHT-
T ss_pred HHHHHHhhc-----------------------------------------CCCeEEEEEcCCCCCchHHHHHHHHHHHh-
Confidence 999887651 23478999997654334456666666542
Q ss_pred cCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCC
Q 006403 510 SGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAP 589 (646)
Q Consensus 510 ~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (646)
.+|.+|+++.... +..+.. .... ..+++.+++. +
T Consensus 403 ---~aD~vilt~~~~~------~e~p~~-g~~~------~~l~~~~~~~--g---------------------------- 436 (494)
T 4hv4_A 403 ---QVDVLLMLDVYAA------GEPPIP-GADS------RALCRTIRNR--G---------------------------- 436 (494)
T ss_dssp ---TSSEEEEECCBCT------TCCCCT-TCSH------HHHHHHHHTT--T----------------------------
T ss_pred ---cCCEEEEeCCcCC------ccCCcC-CccH------HHHHHHHHhh--C----------------------------
Confidence 4788888865411 111100 0000 1233222211 0
Q ss_pred CCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEeC--chhcHHhHH
Q 006403 590 LCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTG--SLHLVGDVL 641 (646)
Q Consensus 590 ~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTG--SlhLVG~vl 641 (646)
...+.+++++++|++.+.+.++. .=-|||+| |++.+|..|
T Consensus 437 --------~~~~~~~~~~~eAv~~a~~~a~~----gDvVL~~GaG~~~~~~~~l 478 (494)
T 4hv4_A 437 --------KLDPILVPDSESAPEMLAQILNG----EDLILVQGAGNIGKIARKL 478 (494)
T ss_dssp --------SCCCEEECCTTTHHHHHHHHCCT----TEEEEEECSSTHHHHHHHH
T ss_pred --------CCCeEEeCCHHHHHHHHHHhCCC----CCEEEEECCCCHHHHHHHH
Confidence 01356789999999999887653 22578877 999999876
No 15
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=5.4e-37 Score=337.73 Aligned_cols=210 Identities=17% Similarity=0.169 Sum_probs=164.0
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 216 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~ps 216 (646)
.++|+||||||||||+.|+++||+++|.++.+.+.- |.|++..
T Consensus 112 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~~------------------------- 154 (451)
T 3lk7_A 112 SQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASEV------------------------- 154 (451)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHHH-------------------------
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhhh-------------------------
Confidence 389999999999999999999999999987543321 2221100
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeeccCCCccccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccCCCC---cE
Q 006403 217 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI---PA 293 (646)
Q Consensus 217 ~Fe~lT~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk~g~---~a 293 (646)
.....++|++|+|+|+++ +|.+|.+ +|+++|||||+.||+|+|| |+|+|+.+|++||+... .+
T Consensus 155 -----------~~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~~ 220 (451)
T 3lk7_A 155 -----------VQAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDFL 220 (451)
T ss_dssp -----------TTTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSEE
T ss_pred -----------hhcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 001236899999999875 6788877 7999999999999999999 99999999999998654 48
Q ss_pred EEeCCchHHHHHHHHHHHhcCccEEEecc-cc------------cc---chhcccccCcchhhHhhHHHHHHHHHHHHHh
Q 006403 294 FTVPQLSEAMSVLQDRALELMVPLEVAAP-LD------------IE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRR 357 (646)
Q Consensus 294 v~~~q~~~~~~vl~~~a~~~~~~l~~~~~-~~------------~~---~~~~v~l~L~G~hq~~NAalAia~a~~ll~~ 357 (646)
|+|.||+.+..+ +++.+++++.++. .. +. ....+.++++|.||++|+++|++++..+
T Consensus 221 V~n~dd~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l--- 293 (451)
T 3lk7_A 221 VLNFNQGISKEL----AKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA--- 293 (451)
T ss_dssp EEETTSHHHHHH----HTTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH---
T ss_pred EEECCcHHHHHH----HhhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc---
Confidence 999999875443 3344555544431 00 00 0124678999999999999999999988
Q ss_pred cCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEe-CCCCHHHHHHHHH
Q 006403 358 TGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAK 432 (646)
Q Consensus 358 ~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilD-gAHNp~sl~a~l~ 432 (646)
|. .++.|.+||++|+ ||||||++... +++.||+| +||||+|+.++++
T Consensus 294 -gi-------------~~~~i~~~L~~f~~~~gR~e~v~~~--------------~g~~vi~D~~a~np~a~~~al~ 342 (451)
T 3lk7_A 294 -GI-------------SNQVIRETLSNFGGVKHRLQSLGKV--------------HGISFYNDSKSTNILATQKALS 342 (451)
T ss_dssp -TC-------------CHHHHHHHHHHCCCCTTSSEEEEEE--------------TTEEEEECTTCCSHHHHHHHHH
T ss_pred -CC-------------CHHHHHHHHHhCCCCCCcEEEEeee--------------CCcEEEEeCCCCCHHHHHHHHH
Confidence 62 3788999999998 99999999764 35889999 7999999999876
No 16
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.3e-36 Score=340.82 Aligned_cols=336 Identities=15% Similarity=0.165 Sum_probs=214.3
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEe---cCHHHHHHHHHHHHHHhhhhccCCC
Q 006403 136 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLD---ITEDKFLFYFWECWHLLRENVTEDL 212 (646)
Q Consensus 136 ~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~---Is~~~f~~~f~~v~~~l~~~~~~~~ 212 (646)
..++|+||||||||||++|+++||+++|++++++. +|.+ -+.+.+... +.....-..
T Consensus 121 ~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~i-------------Gg~~~~~~T~~nln~~-------ig~~~~~~~ 180 (524)
T 3hn7_A 121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLI-------------GGVPLVNTTDTNLQQV-------FAHSSYLGT 180 (524)
T ss_dssp GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEEC-------------SCCBCCCSSCHHHHHH-------TTSSEECCC
T ss_pred cCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEE-------------CCEeccccCchhhhhh-------hhhHHhhCC
Confidence 45899999999999999999999999999886431 1211 111111110 000000000
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCcccc-cc-ccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC
Q 006403 213 PMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDST-NV-IKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK 288 (646)
Q Consensus 213 ~~ps~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D~T-Nv-i~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk 288 (646)
...++. .+.++|++|+|+|+. +..+.. .+ -.+|+++|||||+.||+|+|| |+|+|+.+|+.||+
T Consensus 181 ~~~~~~-----------~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~aK~~i~~ 248 (524)
T 3hn7_A 181 EKDDSD-----------NSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVR 248 (524)
T ss_dssp CCCSSC-----------TTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHHT
T ss_pred Cccccc-----------ccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHHHHHHHHH
Confidence 000000 134578999999874 322221 11 128999999999999999999 99999999999997
Q ss_pred ---CCCcEEEeCCchHHHHHHHHHHHhcCccEEEec-----------------------c--------------cccc--
Q 006403 289 ---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA-----------------------P--------------LDIE-- 326 (646)
Q Consensus 289 ---~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~-----------------------~--------------~~~~-- 326 (646)
++..+|+|.||+....++.+. ...+++.++ . |...
T Consensus 249 ~~~~~g~~VlN~DD~~~~~~~~~~---~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l~~~ 325 (524)
T 3hn7_A 249 MIPSTGKIIMPAATISLEDTLAKG---VWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFN 325 (524)
T ss_dssp TSCTTSEEEEESSCHHHHHHHHTC---CCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEET
T ss_pred hCCCCCEEEEECCCHHHHHHHHhc---cCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEEEEC
Confidence 466789999999765544321 111221110 0 0000
Q ss_pred --c--hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCC-CCCcEEEEeccCCCC
Q 006403 327 --K--LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVP 401 (646)
Q Consensus 327 --~--~~~v~l~L~G~hq~~NAalAia~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~-~pGR~E~v~~~~~~~ 401 (646)
. +..+.++++|.||++|+++|++++..+ |. .++.+.++|++++ ||||||++...
T Consensus 326 ~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l----gi-------------~~~~i~~~L~~~~~~~gR~e~~~~~---- 384 (524)
T 3hn7_A 326 DNKEATALVNWSMSGLHNVNNALVAIAAAYNI----GV-------------SVKTACAALSAFAGIKRRMELIGDV---- 384 (524)
T ss_dssp TEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT----TC-------------CHHHHHHHHHTCCCBTTSSEEEEEE----
T ss_pred CccceeEEEEeCCCcHHHHHhHHHHHHHHHHc----CC-------------CHHHHHHHHHhCCCCCceEEEEEec----
Confidence 0 134678999999999999999999887 62 3788999999998 99999999754
Q ss_pred CCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccC
Q 006403 402 NSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKI 481 (646)
Q Consensus 402 ~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (646)
+++.||+|+||||++++++++++++.. +.
T Consensus 385 ----------~g~~vi~D~ahnp~~~~a~l~~l~~~~-----------------------------------------~~ 413 (524)
T 3hn7_A 385 ----------NDILVFDDFAHHPTAITTTLDGAKKKL-----------------------------------------AD 413 (524)
T ss_dssp ----------TTEEEEEECCCSHHHHHHHHHHHHHHH-----------------------------------------TT
T ss_pred ----------CCcEEEEECCCCHHHHHHHHHHHHhhc-----------------------------------------CC
Confidence 258999999999999999999887652 23
Q ss_pred ccEEEEEecCCCC-ChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHHHHhhc
Q 006403 482 SKQILLFNCMEAR-HPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIH 560 (646)
Q Consensus 482 ~~~ilvFg~~~dR-d~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~ 560 (646)
.|+|+|||+++.+ +...+...+...+ ..+|.+|++++.. +. . + .+++.+.+..
T Consensus 414 ~r~i~V~g~~~~~~~~g~~~~~~~~~~----~~aD~vil~~~~~---------r~----~---~------~~~l~~~~~~ 467 (524)
T 3hn7_A 414 RRLWAIIEPRSNTMKMGIHQDSLAQSA----TLADHTLWYEPTG---------LE----W---G------LKEVIDNATI 467 (524)
T ss_dssp SCEEEEEECCCCSSCCSCCTTHHHHHT----TTSSEEEEECCTT---------CC----C---S------HHHHHHHHHH
T ss_pred CCEEEEECCCCcchhhhhhHHHHHHHH----hcCCEEEEcCCCC---------CC----C---C------HHHHHHHHHh
Confidence 4789999996433 2222223333333 2588888876431 00 0 0 1122223311
Q ss_pred CCCCcccccccccccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHHhhhhcCCCCcceEEEe--CchhcHH
Q 006403 561 GADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVT--GSLHLVG 638 (646)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVT--GSlhLVG 638 (646)
+... ...+.++++.++|++++.+.++. .=-|||. ||++.||
T Consensus 468 ~~~~---------------------------------~~~~~~~~~~~eai~~~~~~a~~----gD~VLv~GaG~~~~v~ 510 (524)
T 3hn7_A 468 ANPS---------------------------------IGSQQVLSSVDDIIKHICTHAKA----GDAIVIMSNGGFEGIH 510 (524)
T ss_dssp HCGG---------------------------------GCCEEEESCHHHHHHHHHHHCCT----TCEEEEEESSCGGGHH
T ss_pred hccC---------------------------------CCCeEEECCHHHHHHHHHHhCCC----CCEEEEEcCCCHHHHH
Confidence 0000 01367889999999999887653 2257887 5999999
Q ss_pred hHH
Q 006403 639 DVL 641 (646)
Q Consensus 639 ~vl 641 (646)
..|
T Consensus 511 ~~~ 513 (524)
T 3hn7_A 511 QRL 513 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.94 E-value=8.5e-27 Score=246.32 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=136.3
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhhhhccCCCCCC
Q 006403 136 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 215 (646)
Q Consensus 136 ~l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~~~~~~~~~~p 215 (646)
..++|+||||||||||+.|+++||+++|+++++...--.-+++.-.. .| .|
T Consensus 107 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~-~~----------------------------~p 157 (326)
T 3eag_A 107 HHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSAR-LP----------------------------QT 157 (326)
T ss_dssp GSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEE-CC----------------------------CC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCccee-cC----------------------------Cc
Confidence 35899999999999999999999999999986432100001110000 01 11
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeeccC--CCcc----ccccccCCcEEEEccCCcchhhhcCCCHHHHHHHHhcccC-
Q 006403 216 PLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKD----STNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK- 288 (646)
Q Consensus 216 s~Fe~lT~lA~~~F~~~~vD~aVlEvG~G--Gr~D----~TNvi~~P~VaVITnIg~DHld~LG~TleeIA~~KagIfk- 288 (646)
... ...++.|++|+|+|+. +..+ ...+ +|+++|||||+.||+|+|| |+|+|+.+|++||+
T Consensus 158 ~~~----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 158 PRQ----------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--RPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRT 224 (326)
T ss_dssp CSS----------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--CCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTT
T ss_pred ccc----------ccCCCCCEEEEEccccccchhhcccceeEe--cCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHh
Confidence 000 1356889999999874 3222 2233 8999999999999999999 99999999999998
Q ss_pred --CCCcEEEeCCchHHHHHHHHHHHhcCccEEEecc--------------cccc----chhcccccCcchhhHhhHHHHH
Q 006403 289 --PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP--------------LDIE----KLKRLELSLSGDHQLVNAGLAV 348 (646)
Q Consensus 289 --~g~~av~~~q~~~~~~vl~~~a~~~~~~l~~~~~--------------~~~~----~~~~v~l~L~G~hq~~NAalAi 348 (646)
++..+|+|.||+...+++.+. ..++++.++. |... ....+.++++|.||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~---~~~~~~~~g~~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKG---CWTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTC---CCSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhc---cCCCEEEECCCCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence 677899999999866554321 2233333221 1110 1135778999999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhcCCCCCc
Q 006403 349 SLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGR 390 (646)
Q Consensus 349 a~a~~ll~~~G~~~~~~~~~~~~~~l~e~i~~gL~~~~~pGR 390 (646)
+++..+ |. .+++|+++|++|+-..|
T Consensus 302 a~a~~l----Gi-------------~~~~i~~~L~~f~gv~R 326 (326)
T 3eag_A 302 AAARHV----GV-------------DIQTACEALGAFKNVKR 326 (326)
T ss_dssp HHHHHH----TC-------------CHHHHHHHHHTCCCEEC
T ss_pred HHHHHc----CC-------------CHHHHHHHHHhCCCCCC
Confidence 999988 72 47899999999974333
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.35 E-value=4.7e-12 Score=120.79 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCC-CCCcEEEEeccCCCCCCCCccccCCCceEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCcccccccc
Q 006403 375 PDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTT 453 (646)
Q Consensus 375 ~e~i~~gL~~~~-~pGR~E~v~~~~~~~~~~~~~~~~~~~~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~ 453 (646)
.++|++||++|+ ++||||++... ++++||+||||||++|+++++.+++..
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~~~--------------~g~~vi~DyaHnP~si~a~l~al~~~~--------------- 61 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKGVV--------------NNITVYDDFAHHPTAITATIDALRAKV--------------- 61 (163)
T ss_dssp ----------------CCEEEEEE--------------TTEEEEEECCCSHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhCCCCCCCeEEEecC--------------CCcEEEEcCCCCHHHHHHHHHHHHHhc---------------
Confidence 367999999998 99999999765 368999999999999999999887642
Q ss_pred ccCchhHHHhhccccccccccccccccCccEEEEEecCCCC-ChhhhHHHHHHHhhhcCCCccEEEEeC
Q 006403 454 KTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEAR-HPQVLLPRLVSTCASSGTHFSKALFVP 521 (646)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~dR-d~~~ll~~L~~~~~~~~~~fd~~if~~ 521 (646)
+.+|+++||++.+++ ..+.+...+...+. .+|.+|+++
T Consensus 62 --------------------------~~~riivvf~~g~~s~r~k~~~~~~~~~~~----~aD~vi~~~ 100 (163)
T 3mvn_A 62 --------------------------GQQRILAVLEPRSNTMKMGVHKHELATSLQ----DADSVFIYQ 100 (163)
T ss_dssp --------------------------TTSCEEEEECCC---------CHHHHHHHT----TCSEEEEEC
T ss_pred --------------------------CCCcEEEEECCCCcchhhHHHHHHHHHHHh----cCCEEEEEC
Confidence 235789999997653 22345566665442 478888875
No 19
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=91.40 E-value=0.55 Score=49.85 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=32.0
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 137 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 137 l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
-+.|.|+||- ||++|+..+...|++.|++++.+.|-
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg 190 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG 190 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc
Confidence 4679999995 99999999999999999999987643
No 20
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.50 E-value=0.24 Score=47.60 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=28.8
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ |||||+.-++..|.+.|+||.++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 578888875 89999999999999999999886
No 21
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.75 E-value=0.54 Score=47.63 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=30.4
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
...++|.||+++ ||||++.-++..|.+.|.||.++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 455899999774 89999999999999999999764
No 22
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=87.49 E-value=0.44 Score=47.18 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=32.6
Q ss_pred cCccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 135 AELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 135 ~~l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
++++.|-|||| -|||+++.-|...|++.|++|+.|-
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 45688999999 4899999999999999999999986
No 23
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=87.12 E-value=0.44 Score=49.58 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=30.0
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
..-+||+|+| =-|||||+.-|+..|.+.|+||+++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3458999996 3479999999999999999999885
No 24
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.79 E-value=15 Score=40.12 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=29.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..+|.++|.+ |||||+.-++..|...|++|.++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4688888765 6999999999999999999988764
No 25
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=85.88 E-value=0.58 Score=43.99 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=28.5
Q ss_pred ccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 137 LKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 137 l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+++|.|+++ -||||++.-++..|.+.|+||.++
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 368889855 469999999999999999999775
No 26
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.39 E-value=0.66 Score=47.65 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=30.4
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
...++|.|||++ ||||++.-++..|.+.|.||.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 345799999875 89999999999999999999764
No 27
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=85.38 E-value=0.64 Score=46.93 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=32.7
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 135 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 135 ~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
++++.|-||||. |||+++.-|...|++.|++|+.|-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456889999997 899999999999999999999985
No 28
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.23 E-value=0.7 Score=43.95 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=30.7
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
++++|.|+|.. ||||++..+...|+..|++++.+.-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 46799999986 8999999999999999999998874
No 29
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.15 E-value=0.77 Score=44.35 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=28.4
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ ||||++..++..|.+.|+||.++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 688888766 79999999999999999999775
No 30
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.80 E-value=0.77 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.0
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+.++|.||+++ ||||++.-++..|.+.|.||.++
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 345799999775 89999999999999999999764
No 31
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.55 E-value=8.2 Score=41.92 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=30.6
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
-.+|.++|-+ |||||+.-++..|...|++|.+.+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4688888876 59999999999999999999886643
No 32
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=83.40 E-value=1.5 Score=46.51 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHhCCC---CcccCccEEEEecCC---CCchHHHHHHHHHHH------CCCCeEEE
Q 006403 117 KLQRMSMYLKILGLE---DRIAELKVIHVSGTK---GKGSTCTFCEAILRE------CGFRTGLF 169 (646)
Q Consensus 117 ~l~~~~~~L~~Lg~~---~p~~~l~vIhVTGTn---GKgST~a~l~sIL~~------~G~kvGl~ 169 (646)
.++++..+...+++. .+....++|.|++.| ||||++.-++..|.. .|+||.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 588888888887643 344567899999555 799999999999984 69999763
No 33
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.25 E-value=1.2 Score=44.87 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEec-----CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 118 LQRMSMYLKILGLEDRIAELKVIHVSG-----TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 118 l~~~~~~L~~Lg~~~p~~~l~vIhVTG-----TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.++++.+..-+ ++|.|++ --||||++..++..|.+.|+||.++
T Consensus 23 ~~~~~r~~~~~~--------~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 23 LEELRRILSNKN--------EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHHC--------SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCCC--------cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 455666665432 4555554 5789999999999999999999764
No 34
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=80.93 E-value=0.98 Score=44.69 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=29.7
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 136 ELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 136 ~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+.++|.|++++ ||||++.-++..|.+.|+||.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 34799999777 69999999999999999999764
No 35
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=80.55 E-value=1.2 Score=43.91 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.8
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ ||||++.-++..|.+.|+||.++
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 578887665 79999999999999999999775
No 36
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=79.75 E-value=1.4 Score=43.07 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.0
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ ||||++.-++..|.+.|+||.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 688887665 69999999999999999999764
No 37
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=78.89 E-value=1.5 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.4
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ ||||++.-++..|.+.|+||.++
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689998776 59999999999999999999764
No 38
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=78.84 E-value=1.5 Score=43.84 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.2
Q ss_pred ccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGT---nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+.|-|||| -|||+++.-|...|++.|++|+.|-
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 478999999 5899999999999999999999985
No 39
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=78.39 E-value=1.2 Score=42.98 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=29.0
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHC-CCCeEEE
Q 006403 136 ELKVIHVSGTK---GKGSTCTFCEAILREC-GFRTGLF 169 (646)
Q Consensus 136 ~l~vIhVTGTn---GKgST~a~l~sIL~~~-G~kvGl~ 169 (646)
+.++|.|++++ ||||++.-++..|.+. |+||.++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 44789998655 6999999999999998 9999765
No 40
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=78.14 E-value=1.5 Score=44.15 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=27.9
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|++++ ||||++.-++..|.+.|+||.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 589998655 79999999999999999999664
No 41
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=76.73 E-value=1.5 Score=43.31 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=28.9
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+.++|.|++.+ ||||++.-++..|. .|+||.++
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 455899998776 69999999999999 99999764
No 42
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=75.45 E-value=1.8 Score=40.89 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=29.6
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEec
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDI 188 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~I 188 (646)
++|+|.|.+ ||||+...|..++...|+++|. |.+||.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~------------I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAV------------VKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEE------------EEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEE------------EEEcCccc
Confidence 689999976 7999999999999999999886 56677664
No 43
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=75.33 E-value=3.3 Score=43.54 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=30.9
Q ss_pred ccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 134 IAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 134 ~~~l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
..+.++|.|++.+ ||||++.-++..|.+.|+||.+.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567899998766 69999999999999999999764
No 44
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=75.06 E-value=1.8 Score=41.58 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=25.4
Q ss_pred EEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 139 VIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 139 vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+|.|+ |--||||++.-++..|.+.| ||.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 67776 45599999999999999999 99764
No 45
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=74.56 E-value=2.8 Score=44.43 Aligned_cols=53 Identities=17% Similarity=0.069 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHhCCC---CcccCccEEEEecC---CCCchHHHHHHHHHH------HCCCCeEEE
Q 006403 117 KLQRMSMYLKILGLE---DRIAELKVIHVSGT---KGKGSTCTFCEAILR------ECGFRTGLF 169 (646)
Q Consensus 117 ~l~~~~~~L~~Lg~~---~p~~~l~vIhVTGT---nGKgST~a~l~sIL~------~~G~kvGl~ 169 (646)
.++++.++.++.++. .+..+.++|.|++. -|||||+.-++..|. ..|+||.+.
T Consensus 88 ~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 88 TIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 688888888877643 23456789999954 589999999999998 579999764
No 46
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.14 E-value=2.5 Score=43.42 Aligned_cols=34 Identities=26% Similarity=0.165 Sum_probs=27.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHH-CCCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRE-CGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~-~G~kvGl~T 170 (646)
-.+|.|.|-| |||||+..++..|.. .|++|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3577777665 799999999999985 899998765
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=69.81 E-value=6.3 Score=40.68 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.6
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+-.+|.|+|-| |||||+..++..|...|.+|.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 34689999887 699999999999999999887654
No 48
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=69.14 E-value=3.4 Score=40.68 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=26.3
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|. |--||||++..++..|.+.|+||.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 456665 55679999999999999999999764
No 49
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=68.98 E-value=3.8 Score=41.00 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=26.9
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+ |--||||++.-++..|.+.|+||.++
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 566665 45689999999999999999999764
No 50
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=68.58 E-value=6.2 Score=40.91 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.7
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+..+|.|+|.+ |||||+..++..|...|.+|.+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45689999876 799999999999999999987653
No 51
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=68.40 E-value=4 Score=41.28 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=28.6
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 135 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTG--TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+.++|.|+| --||||++.-++..|.+.|+||.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3457888873 3469999999999999999999774
No 52
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=65.00 E-value=8.4 Score=36.41 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=28.7
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+-.+|+|+|-+ ||||++.++...|...|.++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 34689999987 799999999999998887775543
No 53
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=63.92 E-value=5.5 Score=42.18 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=32.3
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 137 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 137 l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
-+.|.|+||. |||+|+..+...|++.|++++.+.+.
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg 207 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG 207 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence 4679999995 99999999999999999999998765
No 54
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.05 E-value=15 Score=34.73 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=27.3
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl 168 (646)
+-.+|+|.|-| ||||++.+|..+|...|.++|.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~ 55 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEV 55 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 33689999987 8999999999999977766665
No 55
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=63.04 E-value=5.7 Score=40.92 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=29.5
Q ss_pred ccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 134 IAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 134 ~~~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+.+++|.|+ |--||||++.-++..|.+.|+||.+..
T Consensus 10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 10 NKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp BTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3344677777 555799999999999999999997754
No 56
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=59.56 E-value=8 Score=36.48 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=29.3
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+++|.|+|-+ ||||++..+...|...|+++|.+.-
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 5789999985 7889888888888889999987653
No 57
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=59.14 E-value=28 Score=36.14 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=25.8
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHC--CCCeEEE
Q 006403 135 AELKVIHVSGTK--GKGSTCTFCEAILREC--GFRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn--GKgST~a~l~sIL~~~--G~kvGl~ 169 (646)
.+..+|+|+|-+ ||||++..+..+|... +.++++.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 344589999976 6899999999999752 3456553
No 58
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=57.81 E-value=6.8 Score=41.04 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=28.2
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 006403 137 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 137 l~vIhVTGTn---GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+++|.|++.+ ||||++.-++..|.+.|+||.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3688888665 69999999999999999999764
No 59
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.99 E-value=13 Score=35.29 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=24.1
Q ss_pred EEEEecCCC--CchHHHHHHHHHHHCCCCeEEEc
Q 006403 139 VIHVSGTKG--KGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 139 vIhVTGTnG--KgST~a~l~sIL~~~G~kvGl~T 170 (646)
+|+|.|-|| |||+..++...++..|..++-|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~ 36 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEcCEe
Confidence 567777665 99999999999987785554443
No 60
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=51.40 E-value=7.4 Score=40.62 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=28.8
Q ss_pred CccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 136 ELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 136 ~l~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
..++|.|+ |--||||+++-++..|.+.|+||.+..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34677777 555799999999999999999998764
No 61
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=50.89 E-value=7.3 Score=40.62 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=27.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
-.+|++.|-| |||||+..++..++..|.++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4578888776 699999999999999888876654
No 62
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=50.47 E-value=15 Score=37.38 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=26.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
..+|+|||-- ||||++.+++..|...|.++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 3689999975 899999999999987777665543
No 63
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=47.39 E-value=12 Score=38.52 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=27.2
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVT---GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
++|.|+ |--||||+++-++..|.+.|+||.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 445555 556899999999999999999998864
No 64
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=45.97 E-value=9.1 Score=41.45 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=28.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
.+|.|+|- .|||||+.-++..|...|++|.++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46777764 48999999999999999999987654
No 65
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=44.51 E-value=18 Score=37.03 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=30.6
Q ss_pred cCccEEEEec----CCCCchHHHHHHHHHHHCCCCeEE
Q 006403 135 AELKVIHVSG----TKGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 135 ~~l~vIhVTG----TnGKgST~a~l~sIL~~~G~kvGl 168 (646)
...+.|-||| +=|||-|++-+..+|++.|++|-.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 4568999998 679999999999999999999865
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=43.82 E-value=11 Score=39.30 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=33.6
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCHHHHHHHHHHHHHHhh
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLR 205 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~~~f~~~f~~v~~~l~ 205 (646)
+-+.|-.|| |||+++..+..-|......- .+..+ ..+.|||..+.... ..|..+|+.|.
T Consensus 48 lli~GpPGT-GKT~~v~~v~~~L~~~~~~~------~~~~~-~~v~INc~~~~t~~--~~~~~I~~~L~ 106 (318)
T 3te6_A 48 FYITNADDS-TKFQLVNDVMDELITSSARK------ELPIF-DYIHIDALELAGMD--ALYEKIWFAIS 106 (318)
T ss_dssp EEEECCCSH-HHHHHHHHHHHHHHHTTTTT------SSCCE-EEEEEETTCCC--H--HHHHHHHHHHS
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHHHhhhc------cCCce-EEEEEeccccCCHH--HHHHHHHHHhc
Confidence 344455555 79999999998887642110 00000 23788888776542 34556677663
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=43.30 E-value=23 Score=36.22 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=27.4
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
-.+|++.|-| |||||+..++..++..+.++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3578888877 799999999999998877775543
No 68
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=43.26 E-value=27 Score=36.20 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 121 MSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 121 ~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+.+++.+. ....+..+|+|+|. .||||++.-+...|...|++++++.
T Consensus 65 ~~~~~~~~~--~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 65 AQQLLLRLL--PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp HHHHHHHHG--GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhH--hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 344555553 12234578999986 4799999999988988999998764
No 69
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=42.93 E-value=18 Score=32.94 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=25.9
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
++|.|+|. .||||.+..|+.-|...|+.+..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 46777776 689999999999999888877544
No 70
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.06 E-value=23 Score=32.44 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvG 167 (646)
+|.|+|. .||||.+.+++..|...|+++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5788885 6899999999999999998774
No 71
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=41.54 E-value=27 Score=35.64 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=28.7
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
..+|.++|-+ ||||++..++..+...|.++.+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4578887754 6999999999999999999977543
No 72
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=41.19 E-value=28 Score=35.96 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=34.3
Q ss_pred HHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 123 MYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 123 ~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.++..+.. ...+..+|+|+|-+ ||||+...+...+...|.++.+..
T Consensus 44 ~~~~~l~~--~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMP--YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHGG--GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCc--ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44555442 23455789999986 699999999999999999987754
No 73
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=40.31 E-value=29 Score=31.89 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=26.8
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+|.|+|- .||||.+..++..|...|+++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 57888887 579999999999999988887544
No 74
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=39.42 E-value=36 Score=37.55 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=28.6
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+.++|.|+|.. |||||+.-|+..|...|+++.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45688888764 799999999999999999998765
No 75
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=39.14 E-value=1.2e+02 Score=32.10 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.6
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 144 GTKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 144 GTnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
|--||||++..++..|.+.|+||-+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4457999999999999999999988765
No 76
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=38.77 E-value=24 Score=38.06 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.2
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHC-CCCeEEEcC
Q 006403 136 ELKVIHVSGT--KGKGSTCTFCEAILREC-GFRTGLFTS 171 (646)
Q Consensus 136 ~l~vIhVTGT--nGKgST~a~l~sIL~~~-G~kvGl~TS 171 (646)
+.++|.|+|. .|||||+.-++..|... |++|.++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3467777754 58999999999999998 999987643
No 77
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.51 E-value=29 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+|.|+|- .||||.+..++.-|...|+.+-.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 57888886 699999999999999989887443
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.47 E-value=29 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=27.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
-.+|++.|-| |||||+..|+..+...+.++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 3578888877 799999999999998877765543
No 79
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=37.99 E-value=18 Score=37.07 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=31.0
Q ss_pred CccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceeEECCEecCH
Q 006403 136 ELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITE 190 (646)
Q Consensus 136 ~l~vIhVTGTnG--KgST~a~l~sIL~~~G~kvGl~TSPhL~~~~ERI~InG~~Is~ 190 (646)
+++++.|+|-+| |||....+.... .|.|++++.- . +. .|.|||.++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~-d---~G-~i~idg~~l~~ 52 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIEN-E---FG-EVSVDDQLIGD 52 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECS-S---CC-SCCEEEEEECT
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEe-c---Cc-ccCccHHHHhC
Confidence 578999999887 555544444332 5888888642 1 11 27788988753
No 80
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=37.78 E-value=9.2 Score=36.54 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=24.4
Q ss_pred EEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 140 IHVS--GTKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 140 IhVT--GTnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
|.|+ |--||||++.-++..|.+.|+||.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4454 44569999999999999999999764
No 81
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=37.13 E-value=23 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.7
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTG 167 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvG 167 (646)
+|.|+|. .||||.+.+++.-|...|+.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5677776 4899999999999988888753
No 82
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=37.03 E-value=20 Score=38.83 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEecCCCCchH-HHHHHHHHHHC
Q 006403 139 VIHVSGTKGKGST-CTFCEAILREC 162 (646)
Q Consensus 139 vIhVTGTnGKgST-~a~l~sIL~~~ 162 (646)
+|+|| ||||++| +.++...|.+.
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHHh
Confidence 89999 9999998 88888888863
No 83
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=36.91 E-value=47 Score=31.60 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.7
Q ss_pred cEEEEecCCCCchHHHHHHHHHHH--CCCCeEEEc
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILRE--CGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~--~G~kvGl~T 170 (646)
+++-++|.-|+|-|++++..+.+. .|++|.+++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 689999998888888888777665 799998876
No 84
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=36.51 E-value=15 Score=39.67 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=28.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
-.+|.|+|-+ |||||+..++..|...|.+|.+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 4577777654 7999999999999999999977653
No 85
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=36.27 E-value=30 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.5
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCe
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kv 166 (646)
.+|.++|.. ||||++.+++..|...|+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 578889885 79999999999998878765
No 86
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=36.22 E-value=39 Score=37.51 Aligned_cols=43 Identities=23% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHhCCCCcccCccEEEEecC------CCCchHHHHHHHHHHHCCCCeEEE
Q 006403 124 YLKILGLEDRIAELKVIHVSGT------KGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 124 ~L~~Lg~~~p~~~l~vIhVTGT------nGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+++++. ...+.++|.||.+ -|||||+.=|+..|.+.|.||-+.
T Consensus 47 ~l~~~~---~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 47 VYRRLK---DKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp HHHHTT---TSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred Hhhhhh---ccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 445554 2234589999987 479999999999999999999764
No 87
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=36.17 E-value=37 Score=31.54 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=26.3
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl 168 (646)
.+|.|+|. .||||.+.+++.-|...++.+-.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 57888886 68999999999999988888743
No 88
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=35.71 E-value=22 Score=36.21 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=29.5
Q ss_pred cCccEEEEecC----CCCchHHHHHHHHHHHCCCCeEE
Q 006403 135 AELKVIHVSGT----KGKGSTCTFCEAILRECGFRTGL 168 (646)
Q Consensus 135 ~~l~vIhVTGT----nGKgST~a~l~sIL~~~G~kvGl 168 (646)
..++.|-|||- =|||-|++-+..+|++.|++|-.
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 45688999985 59999999999999999999853
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=35.25 E-value=30 Score=33.49 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=27.1
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHC--CCCeEEE
Q 006403 138 KVIHVSGTKGKGSTCTFCEAILREC--GFRTGLF 169 (646)
Q Consensus 138 ~vIhVTGTnGKgST~a~l~sIL~~~--G~kvGl~ 169 (646)
-.|+|-+-||||.|++-+.-.++++ |+||.++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4677888889999999999999975 7899876
No 90
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=34.63 E-value=48 Score=36.72 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=27.2
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEE
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~ 169 (646)
+-.+|+|.|-| ||||++..|..+++..|.++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 33578888887 69999999999999887776553
No 91
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=34.28 E-value=35 Score=34.88 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=27.2
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
-.+|+|.|-| ||||+...++.+++..|.++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4578887776 699999999999998887776544
No 92
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=34.00 E-value=23 Score=36.89 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=24.1
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 144 GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 144 GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
|--||||++.-++..|.+.|+||.+..
T Consensus 25 GGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 667899999999999999999998754
No 93
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=33.93 E-value=25 Score=36.80 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=27.0
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHH--HCCCCeEEEcC
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILR--ECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~--~~G~kvGl~TS 171 (646)
++|-++ |--||||+++.++..|. +.|+||.+...
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 444444 66789999999999999 89999987643
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=31.59 E-value=22 Score=34.63 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.6
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAIL 159 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL 159 (646)
.+|+|+|-| ||||++.++..+|
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999998 6999999998887
No 95
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=31.38 E-value=2.6e+02 Score=24.36 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=67.2
Q ss_pred eEEEEeCCCCHHHHHHHHHHHHhhhccCCCCCccccccccccCchhHHHhhccccccccccccccccCccEEEEEecCCC
Q 006403 414 LIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEA 493 (646)
Q Consensus 414 ~~vilDgAHNp~sl~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~d 493 (646)
+.+-++|-=|++.++.+...+.+.+++. + .+..+.++.+.....
T Consensus 22 l~v~~~G~lt~~d~~~l~~~l~~~l~~~------------------------~------------~~~i~ll~~~~~f~G 65 (126)
T 2q3l_A 22 LAFKAVGKLTHEDYEQMTPLLESALAGI------------------------K------------TPEIVALIDITELDG 65 (126)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHTTTC------------------------C------------SSCEEEEEEEEEEEE
T ss_pred EEEEEEeeECHHHHHHHHHHHHHHHHhC------------------------C------------CceEEEEEEecCCCC
Confidence 5677889889999999888777764320 0 111334444444444
Q ss_pred CChhhhHHHHHHHhhhcCCCccEEEEeCCCCccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCccccccccc
Q 006403 494 RHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKE 573 (646)
Q Consensus 494 Rd~~~ll~~L~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~~l~~~w~~l~~~~~~~~~~~~~~~ 573 (646)
-++..+.+.+.-.. ++...|+++-+|++. .|++.+.++-.-+..
T Consensus 66 ~~~~a~~~d~k~~~-~h~~~~~RiAvV~d~----------------------~W~~~~~~~~~~~~~------------- 109 (126)
T 2q3l_A 66 LSLHAAWDDLKLGL-KHGKEFKRVAIIGQG----------------------ELQEWATRVANWFTP------------- 109 (126)
T ss_dssp ECHHHHHHHHHHHH-HHGGGEEEEEEECCS----------------------HHHHHHHHHHHHHCS-------------
T ss_pred CCHHHHHHHHHhhh-hHHhcCCEEEEEcCh----------------------HHHHHHHHHHhhccC-------------
Confidence 56777776654222 233469999998765 477777765544421
Q ss_pred ccccCCCccccccCCCCCCCCcccCccceeeCCHHHHHHHHH
Q 006403 574 STEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLR 615 (646)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~r 615 (646)
..+.+|...++|.+|++
T Consensus 110 -------------------------~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 110 -------------------------GEFKFFEDKRDALDWLC 126 (126)
T ss_dssp -------------------------SEEEEESCHHHHHHHHC
T ss_pred -------------------------CceeccCCHHHHHHHhC
Confidence 25889999999999984
No 96
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=30.83 E-value=36 Score=33.55 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=27.1
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+|.|.|-. ||||.+..+...|...|++++.++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 578888765 799999999999999999954443
No 97
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=30.43 E-value=56 Score=33.71 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 120 RMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 120 ~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+|.++-+.|+- ...-.+|||.| .|-.|||-++.+|...|+. +++|+.+
T Consensus 18 ~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~ils 71 (315)
T 4ehx_A 18 NFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCILS 71 (315)
T ss_dssp HHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEEE
T ss_pred HHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEEe
Confidence 345555556642 22345688887 6999999999999999975 4566654
No 98
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=30.38 E-value=18 Score=33.68 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.4
Q ss_pred cEEEEecCC--CCchHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEA 157 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~s 157 (646)
.+|+|+|.+ ||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 478999876 78888888877
No 99
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=30.37 E-value=82 Score=34.81 Aligned_cols=94 Identities=18% Similarity=0.363 Sum_probs=53.9
Q ss_pred HHHHHHHhhhCCCcEEEEeeccCCCcccccccc--------CCcEEEEcc-C-------Cc-------chhhhcCCCHHH
Q 006403 222 TVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIK--------EPVVCGVTS-L-------GM-------DHMELLGNTLND 278 (646)
Q Consensus 222 T~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~--------~P~VaVITn-I-------g~-------DHld~LG~Tlee 278 (646)
|-+|++. .||+|-|.|-|-.+-+-.+++ +|+++||.. | |. +.++.+..-+.+
T Consensus 274 tk~ALkl-----aDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~N 348 (543)
T 3do6_A 274 TKMAMKL-----SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKN 348 (543)
T ss_dssp HHHHHHH-----CSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHH
T ss_pred HHHHHhc-----cCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHH
Confidence 5555554 499999999995443322221 587776543 2 22 222222222335
Q ss_pred HHHHHhcccCCCCcEEEe----C-CchHHHHHHHHHHHhcCccEEEe
Q 006403 279 IAFHKAGIFKPQIPAFTV----P-QLSEAMSVLQDRALELMVPLEVA 320 (646)
Q Consensus 279 IA~~KagIfk~g~~av~~----~-q~~~~~~vl~~~a~~~~~~l~~~ 320 (646)
+.+|-..+-+-|.|+|+. + |.++-.+.+++.|++.|++....
T Consensus 349 L~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~s 395 (543)
T 3do6_A 349 LRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVS 395 (543)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 555555555578887763 2 33444577889999988876543
No 100
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=30.19 E-value=18 Score=34.54 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 146 KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 146 nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
.||||-+.+|..-|++.|+++-+..-|.
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999986655554
No 101
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=28.96 E-value=38 Score=35.28 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=27.4
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHH--HCCCCeEEEc
Q 006403 138 KVIHVS---GTKGKGSTCTFCEAILR--ECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVT---GTnGKgST~a~l~sIL~--~~G~kvGl~T 170 (646)
++|.|+ |--||||+++-++..|. +.|+||.++.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 455555 56789999999999999 8999998764
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=28.92 E-value=43 Score=31.21 Aligned_cols=33 Identities=21% Similarity=-0.010 Sum_probs=24.9
Q ss_pred cEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVTGTnG--KgST~a~l~sIL~~~G~kvGl~T 170 (646)
.++.|.|-|| |||++..+...+...|.++.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6899999875 88888888866666666775554
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=28.82 E-value=26 Score=32.74 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.8
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR 160 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~ 160 (646)
.+|+|+|-| ||||++.++..++.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999987 59999999998875
No 104
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=28.48 E-value=40 Score=34.54 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=26.9
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHC-C-CCeEEE
Q 006403 135 AELKVIHVSGTK--GKGSTCTFCEAILREC-G-FRTGLF 169 (646)
Q Consensus 135 ~~l~vIhVTGTn--GKgST~a~l~sIL~~~-G-~kvGl~ 169 (646)
.+-.+|+|.|-| ||||++.+|..+|... | .++++.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v 126 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLV 126 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEE
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEE
Confidence 344699999987 7999999999999864 3 345543
No 105
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=28.40 E-value=25 Score=32.38 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=18.6
Q ss_pred cccCccEEEEecCC--CCchHHHHHHHH
Q 006403 133 RIAELKVIHVSGTK--GKGSTCTFCEAI 158 (646)
Q Consensus 133 p~~~l~vIhVTGTn--GKgST~a~l~sI 158 (646)
+..+..+|+|+|.. ||||++.+++..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34455789999974 899988887763
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=28.31 E-value=53 Score=29.80 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=23.5
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH-HCCCCeEE
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR-ECGFRTGL 168 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~-~~G~kvGl 168 (646)
..+.+.|-+ ||||++..+...+. ..|.++..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 578888865 68899888888887 67776543
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=27.35 E-value=68 Score=33.07 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHhCCCCcccCccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEc
Q 006403 123 MYLKILGLEDRIAELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 123 ~~L~~Lg~~~p~~~l~vIhVTGTnG--KgST~a~l~sIL~~~G~kvGl~T 170 (646)
.+|+.+.+. ..+-.+|+|.|-+| |||+...+...+...+.++.+.+
T Consensus 43 ~~l~~i~~~--~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 43 DLIDAVLPQ--TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHGGG--CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcc--cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 456656532 23447899999986 88999999999988787876654
No 108
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=27.26 E-value=29 Score=32.40 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=16.7
Q ss_pred cEEEEecCC--CCchHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEA 157 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~s 157 (646)
.+|+|+|.+ ||||++.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 479999986 79999988876
No 109
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=26.93 E-value=49 Score=33.50 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.5
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 136 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 136 ~l~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
+-.+|.|+|-+ ||||++..++..+...|.+|.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34688888754 699999999999999998887654
No 110
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=26.14 E-value=16 Score=34.15 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=25.9
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 139 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 139 vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+|.|.|- .||||.+..|...|...|++++++.-|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~ 38 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR 38 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 3444443 4899999999999998888887665443
No 111
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=26.06 E-value=35 Score=40.02 Aligned_cols=34 Identities=12% Similarity=-0.104 Sum_probs=30.7
Q ss_pred ccEEEEecC---CCCchHHHHHHHHHHHC-----CCCeEEEc
Q 006403 137 LKVIHVSGT---KGKGSTCTFCEAILREC-----GFRTGLFT 170 (646)
Q Consensus 137 l~vIhVTGT---nGKgST~a~l~sIL~~~-----G~kvGl~T 170 (646)
.+.|-|+|| -|||+++.-|-.+|++. |++|+.|-
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 578999999 59999999999999999 99999885
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=25.82 E-value=33 Score=34.83 Aligned_cols=28 Identities=29% Similarity=0.065 Sum_probs=23.1
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHCC
Q 006403 136 ELKVIHVSGT--KGKGSTCTFCEAILRECG 163 (646)
Q Consensus 136 ~l~vIhVTGT--nGKgST~a~l~sIL~~~G 163 (646)
+-.+|+|+|. .||||++..|...|...|
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 3468999996 578999999999998754
No 113
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=25.73 E-value=46 Score=37.25 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=29.9
Q ss_pred cEEEEe-cC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVS-GT---KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVT-GT---nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+.|-|| || -|||.+++-+..+|++.|++|..|-.
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~ 50 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI 50 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence 567777 65 59999999999999999999988865
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=25.55 E-value=30 Score=37.16 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=25.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+-+.|-+|| |||++...+...|.+.|.+..+.++|-
T Consensus 48 ~li~G~aGT-GKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 48 VTINGPAGT-GATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEECCTTS-CHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 345666676 999999988888888887433444554
No 115
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=24.86 E-value=35 Score=38.20 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=25.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPH 173 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSPh 173 (646)
+++-|+|-. |||+|...+...|...|+++- +.+|-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl-~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVG-LCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE-EEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EecCc
Confidence 344455433 899999999999999998885 44443
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=24.72 E-value=46 Score=31.06 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=26.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
+.|.|.|- .|||+++..+..-+...|+++..+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45667775 479999999999888888877655443
No 117
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=24.60 E-value=50 Score=36.93 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.3
Q ss_pred cEEEEe-cC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVS-GT---KGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVT-GT---nGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+.|-|+ || -|||.+++-+..+|++.|++|..|-.
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~ 41 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL 41 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence 567777 55 69999999999999999999988865
No 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=24.28 E-value=50 Score=33.47 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.3
Q ss_pred cCccEEEEecCCC--CchHHHHHHHHHH
Q 006403 135 AELKVIHVSGTKG--KGSTCTFCEAILR 160 (646)
Q Consensus 135 ~~l~vIhVTGTnG--KgST~a~l~sIL~ 160 (646)
.+-.+|+|+|-|| |||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446999999875 8999999999886
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=23.97 E-value=1e+02 Score=27.58 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=25.9
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~T 170 (646)
..+.+.|-+ |||+++..+...+...|+++..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 567777765 799999999999988787765544
No 120
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=23.57 E-value=69 Score=30.87 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.3
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCC-Ce
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGF-RT 166 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~-kv 166 (646)
.+|.+.|.. ||||.+..+..-|+..|+ .+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 467777765 599999999999999998 54
No 121
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=23.54 E-value=55 Score=36.27 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=27.5
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 006403 138 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLFTS 171 (646)
Q Consensus 138 ~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~TS 171 (646)
+++-++ |--||||++..++..|.+.|+||.+...
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 455555 4578999999999999999999987653
No 122
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=23.52 E-value=38 Score=31.26 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.5
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAIL 159 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL 159 (646)
++|+|+|.. ||||++.+++..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999984 8999999988766
No 123
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=23.42 E-value=33 Score=33.39 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=20.8
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHH
Q 006403 136 ELKVIHVSGT--KGKGSTCTFCEAILRE 161 (646)
Q Consensus 136 ~l~vIhVTGT--nGKgST~a~l~sIL~~ 161 (646)
+..+|+|+|. .||||++.+|+..|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3468999997 4899999988887653
No 124
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=23.23 E-value=39 Score=30.31 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=18.7
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHH
Q 006403 135 AELKVIHVSGT--KGKGSTCTFCEAIL 159 (646)
Q Consensus 135 ~~l~vIhVTGT--nGKgST~a~l~sIL 159 (646)
..+.+|.|+|. .||||++.+|+.-|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999987 58999999888766
No 125
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=23.04 E-value=32 Score=31.80 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAIL 159 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL 159 (646)
.+|+|+|-| ||||++.++...+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999987 6889988887765
No 126
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=22.71 E-value=22 Score=32.99 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.1
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR 160 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~ 160 (646)
++|+|.|-| ||||++.++...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468888887 59999999988876
No 127
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=22.52 E-value=40 Score=31.67 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=17.6
Q ss_pred cEEEEecCCC--CchHHHHHHHHH
Q 006403 138 KVIHVSGTKG--KGSTCTFCEAIL 159 (646)
Q Consensus 138 ~vIhVTGTnG--KgST~a~l~sIL 159 (646)
.+|+|+|.+| |||++.+++..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999865 888888887655
No 128
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=22.24 E-value=72 Score=30.63 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=25.9
Q ss_pred ccEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 006403 137 LKVIHVS--GTKGKGSTCTFCEAILRECGFRTGLFT 170 (646)
Q Consensus 137 l~vIhVT--GTnGKgST~a~l~sIL~~~G~kvGl~T 170 (646)
..++.++ |-.||||++.-+...|. .|+++.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 3445555 56789999999999999 999997754
No 129
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=22.02 E-value=41 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=14.6
Q ss_pred cEEEEecCC--CCchHHHHHH-HHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCE-AILR 160 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~-sIL~ 160 (646)
.+|+|+|-| ||||++.+|. ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 689999998 6999999998 7764
No 130
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=21.83 E-value=75 Score=35.30 Aligned_cols=91 Identities=20% Similarity=0.358 Sum_probs=49.9
Q ss_pred HHHHHHHhhhCCCcEEEEeeccCCCcccccccc--------CCcEEEEcc-C-------Cc-------chhhhcCCCHHH
Q 006403 222 TVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIK--------EPVVCGVTS-L-------GM-------DHMELLGNTLND 278 (646)
Q Consensus 222 T~lA~~~F~~~~vD~aVlEvG~GGr~D~TNvi~--------~P~VaVITn-I-------g~-------DHld~LG~Tlee 278 (646)
|-+|++. .||+|-|.|-|-.+-+-.+++ +|+++||.. | |. +.++.+..-+.+
T Consensus 288 tk~ALkl-----~dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~~~l~~en~~al~~G~~N 362 (557)
T 3pzx_A 288 TKTALKL-----ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFAN 362 (557)
T ss_dssp HHHHHHH-----CSEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHH
T ss_pred HHHHHhc-----cCeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHHH
Confidence 5555554 499999999995443322221 587776543 2 21 222222222334
Q ss_pred HHHHHhcccCCCCcEEEe----C-CchHHHHHHHHHHHhcCccE
Q 006403 279 IAFHKAGIFKPQIPAFTV----P-QLSEAMSVLQDRALELMVPL 317 (646)
Q Consensus 279 IA~~KagIfk~g~~av~~----~-q~~~~~~vl~~~a~~~~~~l 317 (646)
+.+|-..+-+-|.|+|+. + |.++-.+.+++.|.+.|++.
T Consensus 363 L~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~ 406 (557)
T 3pzx_A 363 LEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEV 406 (557)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 445555555678887763 2 33333566777777766654
No 131
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.79 E-value=44 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=17.5
Q ss_pred cEEEEecC--CCCchHHHHHHHHH
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAIL 159 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL 159 (646)
.+|.|+|. .||||++..++..|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 47888887 47999999887665
No 132
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=21.50 E-value=72 Score=35.55 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.4
Q ss_pred ccEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 006403 137 LKVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 169 (646)
Q Consensus 137 l~vIhVTG----TnGKgST~a~l~sIL~~~G~kvGl~ 169 (646)
.+.|-||| +=|||-|++-+..+|++.|++|-..
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~ 39 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAV 39 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEE
Confidence 36788888 4599999999999999999998654
No 133
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=21.45 E-value=62 Score=30.00 Aligned_cols=40 Identities=5% Similarity=0.228 Sum_probs=31.7
Q ss_pred cceeeCCHHHHHHHHHhhhhcCCCCcceEEEeCchhcHHhHHhhhc
Q 006403 600 CSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLK 645 (646)
Q Consensus 600 ~~~v~~si~~ai~~~r~~~~~~~~~~~~VLVTGSlhLVG~vl~~l~ 645 (646)
.+.++.++++|++.+++.. .-+|+|-|+--|+..+|.+++
T Consensus 72 ~~~~~~~~~~~l~~lk~~~------~~~i~viGG~~l~~~~l~l~D 111 (162)
T 3dfr_A 72 GAVVVHDVAAVFAYAKQHL------DQELVIAGGAQIFTAFKDDVD 111 (162)
T ss_dssp TSEEESSHHHHHHHHHHCC------SSCEEECCCHHHHHHTGGGCC
T ss_pred CEEEECCHHHHHHHHhcCC------CCCEEEECCHHHHHHHHhhCC
Confidence 4667799999999887631 237999999999999887765
No 134
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=21.05 E-value=62 Score=29.72 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=22.8
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 006403 138 KVIHVSGT--KGKGSTCTFCEAILRECGFRT 166 (646)
Q Consensus 138 ~vIhVTGT--nGKgST~a~l~sIL~~~G~kv 166 (646)
.+|.|+|. .||||.+..|+.-|...| ++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 47888886 789999999999887766 55
No 135
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.00 E-value=73 Score=27.67 Aligned_cols=37 Identities=8% Similarity=0.306 Sum_probs=28.5
Q ss_pred cchhhhcCC---CHHHHHHHHhcccCCCCcEEEeCCchHH
Q 006403 266 MDHMELLGN---TLNDIAFHKAGIFKPQIPAFTVPQLSEA 302 (646)
Q Consensus 266 ~DHld~LG~---TleeIA~~KagIfk~g~~av~~~q~~~~ 302 (646)
-||+.++++ ++|+|..+|..-++.+..-+.-.+.|+.
T Consensus 51 aDnLgwF~d~~~~IEdil~~kGe~V~~~~~d~~~ed~pe~ 90 (100)
T 2e2z_A 51 ADHLKIFHDHHVTVEQLMKANGEQVSQDVGDLEFEDIPDS 90 (100)
T ss_dssp CCSSCSGGGSCCCHHHHHHHHCCCCSSSSCEEEESSCCHH
T ss_pred ehhhhhhccCCCCHHHHHHHcCCEeeecCCCccHhhChHH
Confidence 577777753 8999999999999877666666666664
No 136
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=20.49 E-value=85 Score=30.15 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=28.4
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCC
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSP 172 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~~~G~kvGl~TSP 172 (646)
.+|.+.|.- ||||.+..+..-|...|+++-+..-|
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 578888865 69999999999999999988554444
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=20.41 E-value=1.1e+02 Score=30.16 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=20.7
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCC
Q 006403 137 LKVIHVSGTKGKGSTCTFCEAILRECGF 164 (646)
Q Consensus 137 l~vIhVTGTnGKgST~a~l~sIL~~~G~ 164 (646)
+-+.|=.|| |||+++..++..|...++
T Consensus 70 vll~G~~Gt-GKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 70 MSFTGNPGT-GKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEEEECTTS-SHHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 334555565 999999999999988765
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=20.12 E-value=45 Score=31.45 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=18.3
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH
Q 006403 138 KVIHVSGTK--GKGSTCTFCEAILR 160 (646)
Q Consensus 138 ~vIhVTGTn--GKgST~a~l~sIL~ 160 (646)
.+|.|.|-+ ||||++.+|...+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 689999987 59999888876653
Done!