Query 006404
Match_columns 646
No_of_seqs 390 out of 1495
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 00:10:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oss_A HUNK1 protein, bromodom 99.9 1.1E-27 3.9E-32 221.2 11.7 105 202-306 19-123 (127)
2 2ouo_A HUNK1 protein, bromodom 99.9 6.8E-28 2.3E-32 223.5 10.1 106 201-306 19-127 (130)
3 3g0l_A Hwalp4, bromodomain adj 99.9 2E-27 7E-32 216.2 13.0 103 203-307 12-114 (117)
4 3d7c_A General control of amin 99.9 2.8E-27 9.7E-32 213.8 11.6 104 202-307 5-108 (112)
5 3fkm_X Signaling protein; brom 99.9 2.6E-27 9E-32 228.2 12.1 109 199-307 16-124 (166)
6 4alg_A Bromodomain-containing 99.9 3E-27 1E-31 225.2 11.2 108 200-307 28-135 (154)
7 3p1f_A CREB-binding protein; s 99.9 6.4E-27 2.2E-31 213.5 12.1 109 201-309 8-117 (119)
8 2d9e_A Peregrin; four-helix bu 99.9 6.9E-27 2.4E-31 214.2 12.2 106 203-310 6-111 (121)
9 3jvl_A Bromodomain-containing 99.9 1.8E-27 6.2E-32 217.5 8.2 106 201-306 6-114 (120)
10 3q2e_A Bromodomain and WD repe 99.9 1E-26 3.5E-31 213.5 11.9 108 202-311 8-116 (123)
11 3mb3_A PH-interacting protein; 99.9 7.5E-27 2.6E-31 217.6 11.1 108 201-310 18-126 (135)
12 2dat_A Possible global transcr 99.9 1E-26 3.5E-31 213.5 11.8 103 202-306 11-119 (123)
13 1e6i_A Transcriptional activat 99.9 9.2E-27 3.2E-31 213.3 10.5 101 205-307 14-114 (121)
14 3nxb_A CAT eye syndrome critic 99.9 8.4E-27 2.9E-31 211.8 10.1 101 203-305 15-115 (116)
15 2yyn_A Transcription intermedi 99.9 1.7E-26 5.9E-31 215.4 12.3 105 200-307 16-122 (135)
16 2i7k_A Bromodomain-containing 99.9 1.8E-26 6.3E-31 210.3 12.0 104 201-306 5-108 (117)
17 2grc_A Probable global transcr 99.9 2.3E-26 7.7E-31 213.0 12.2 106 202-309 9-121 (129)
18 3mb4_A Protein polybromo-1; PB 99.9 2.3E-26 7.9E-31 211.4 9.9 103 203-307 14-122 (124)
19 3rcw_A Bromodomain-containing 99.9 6.6E-26 2.3E-30 211.2 12.8 108 201-310 10-117 (135)
20 3ljw_A Protein polybromo-1; al 99.9 6.4E-26 2.2E-30 207.4 11.7 109 201-311 5-119 (120)
21 3hme_A Bromodomain-containing 99.9 8.8E-26 3E-30 207.4 11.8 103 203-307 12-114 (123)
22 3iu5_A Protein polybromo-1; PB 99.9 4.4E-26 1.5E-30 207.2 9.6 104 203-308 4-113 (116)
23 3mqm_A Probable histone-lysine 99.9 1.2E-25 4E-30 207.2 11.4 107 202-310 7-119 (126)
24 3k2j_A Protein polybromo-1; PB 99.9 2.2E-25 7.4E-30 206.7 11.8 107 201-309 14-126 (130)
25 3uv4_A Second bromodomain of h 99.9 7E-25 2.4E-29 209.7 10.3 107 202-310 27-134 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 8.1E-25 2.8E-29 211.6 9.2 104 201-306 69-172 (174)
27 3o36_A Transcription intermedi 99.9 4.2E-24 1.5E-28 208.6 13.3 104 200-306 77-182 (184)
28 3tlp_A Protein polybromo-1; PB 99.9 4.2E-24 1.4E-28 202.5 10.7 101 205-307 25-132 (150)
29 3dai_A ATPase family AAA domai 99.9 7.8E-24 2.7E-28 196.2 12.1 101 202-304 8-112 (130)
30 2ro1_A Transcription intermedi 99.9 1.9E-23 6.5E-28 205.2 9.7 101 200-307 72-177 (189)
31 3uv5_A Transcription initiatio 99.9 3.7E-23 1.3E-27 213.0 11.5 107 202-310 12-118 (265)
32 2dkw_A Hypothetical protein KI 99.9 6.4E-23 2.2E-27 190.4 11.6 98 200-304 8-109 (131)
33 3u5n_A E3 ubiquitin-protein li 99.9 5.8E-23 2E-27 204.3 11.7 105 199-306 76-200 (207)
34 3aad_A Transcription initiatio 99.9 8.3E-23 2.8E-27 213.2 8.9 105 202-308 45-149 (292)
35 3uv5_A Transcription initiatio 99.9 2.2E-22 7.7E-27 207.2 11.3 106 203-310 135-241 (265)
36 3aad_A Transcription initiatio 99.9 1.3E-21 4.5E-26 204.2 11.2 101 208-310 173-274 (292)
37 2r0y_A Chromatin structure-rem 99.8 4.4E-21 1.5E-25 201.8 8.3 86 218-305 177-262 (311)
38 2r10_A Chromatin structure-rem 99.8 6.6E-21 2.3E-25 204.3 9.0 85 219-305 228-312 (361)
39 2r10_A Chromatin structure-rem 99.8 1.4E-19 4.9E-24 193.9 10.8 100 204-307 78-180 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.9E-19 1E-23 187.9 7.4 101 203-307 27-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 1.6E-17 5.6E-22 155.9 12.8 101 203-309 6-112 (147)
42 2jns_A Bromodomain-containing 99.6 7E-16 2.4E-20 134.2 2.7 75 351-425 10-86 (90)
43 3lqh_A Histone-lysine N-methyl 99.4 1.4E-13 4.6E-18 134.4 8.6 97 202-311 73-169 (183)
44 2lm0_A AF4/FMR2 family member 93.5 0.099 3.4E-06 47.2 5.7 60 360-419 60-120 (125)
45 3h8k_B Autocrine motility fact 34.6 38 0.0013 22.9 3.2 22 598-619 6-27 (28)
46 1uty_A Non-structural protein 21.9 18 0.00063 34.6 -0.1 21 106-126 154-174 (187)
No 1
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.1e-27 Score=221.19 Aligned_cols=105 Identities=37% Similarity=0.688 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
..++...|..||..|++|+.+|+|..|||+.++.+||||+||++||||+||++||++|.|.++.+|.+||+|||+||++|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
|++||.||.+|..|++.|++.|+++
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~l 123 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINEL 123 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999998754
No 2
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=6.8e-28 Score=223.50 Aligned_cols=106 Identities=42% Similarity=0.783 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 006404 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~---s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (646)
.....++.|..||..|+.++. +|+|..|||+..+++||||+||++||||+||++||.+|.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 456788999999999999875 89999999999888999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
|++||+++|.||.+|..|++.|++.|+.|
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999865
No 3
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=2e-27 Score=216.20 Aligned_cols=103 Identities=39% Similarity=0.697 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006404 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
...++.|..||..|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChh--hcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357899999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 283 PPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
+++|.||.+|..|+++|++.|+++-
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.94 E-value=2.8e-27 Score=213.76 Aligned_cols=104 Identities=33% Similarity=0.566 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...|...|..||+.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKS--EAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcc--cccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999976 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 282 NPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|+++|.||.+|..|++.|++.|+++.
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998753
No 5
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=2.6e-27 Score=228.23 Aligned_cols=109 Identities=33% Similarity=0.536 Sum_probs=99.8
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 006404 199 SSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 199 ~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (646)
......|++.|..||..|++++.+++|..||++.++.+||||+||++||||+||++||.++.|.++.+|.+||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
++||++++.||.+|..|+++|++.|+.+.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999998753
No 6
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=3e-27 Score=225.20 Aligned_cols=108 Identities=35% Similarity=0.629 Sum_probs=102.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 006404 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (646)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (646)
.....+...|..||+.|++|+.+|+|..||++.++++||||+||++||||+||++||+++.|.++.+|.+||+|||.||+
T Consensus 28 r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 28 RVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp CCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34578888999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
+||++++.||.+|..|+++|++.|+.+.
T Consensus 108 ~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 108 IYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999997653
No 7
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=6.4e-27 Score=213.53 Aligned_cols=109 Identities=35% Similarity=0.542 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHHHHHHc-CCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 006404 201 SNAMLMKQCENLLTRLMS-HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~-~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (646)
...++.+.|..+|..|++ ++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999998 6899999999999878899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 006404 280 TYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (646)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k 309 (646)
+||+++|.||.+|..|++.|++.|..+...
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988654
No 8
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=6.9e-27 Score=214.20 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006404 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
.++...|..||+.|++|+.+++|..||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCcc--ccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 283 PPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
+++|.+|.+|..|++.|+..|.++...+
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~~ 111 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQA 111 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 9
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.94 E-value=1.8e-27 Score=217.46 Aligned_cols=106 Identities=42% Similarity=0.784 Sum_probs=101.1
Q ss_pred chHHHHHHHHHHHHHHHcCCC---CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 006404 201 SNAMLMKQCENLLTRLMSHQF---GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~---s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (646)
...++++.|..||..|++++. +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999987 89999999999778999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
|++||+++|.||.+|..|++.|++.|+.+
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 114 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKM 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999998764
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=213.48 Aligned_cols=108 Identities=34% Similarity=0.640 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...|+++|..||+.|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 8 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAY 85 (123)
T ss_dssp --CHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999977 89999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006404 282 NPP-QNDVHIMADTLRKYFEVRWKAIEKKLP 311 (646)
Q Consensus 282 N~~-~S~V~~~A~~L~~~Fe~~~k~i~~k~p 311 (646)
|++ ++.||.+|..|+++|++.|+.+...+.
T Consensus 86 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 116 (123)
T 3q2e_A 86 TPNKRSKIYSMTLRLSALFEEKMKKISSDFK 116 (123)
T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 996 999999999999999999999876654
No 11
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=7.5e-27 Score=217.61 Aligned_cols=108 Identities=31% Similarity=0.595 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006404 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
....|.+.|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLL--EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChh--hCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33569999999999999999999999999975 8999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 281 YNPP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 281 YN~~-~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
||++ ++.||.+|..|+++|++.|..+...+
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 126 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDY 126 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 99999999999999999999875443
No 12
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=213.54 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 006404 202 NAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf 275 (646)
...+.+.|..||+.|++|+ .+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTT--TSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999986 689999999854 89999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 276 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
.||++||++++.||.+|..|+++|++.|+++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999988753
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=9.2e-27 Score=213.34 Aligned_cols=101 Identities=36% Similarity=0.598 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006404 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
++..|..||+.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChh--hCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999999965 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 006404 285 QNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
+|.||.+|..|++.|++.|+.+.
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998763
No 14
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=8.4e-27 Score=211.82 Aligned_cols=101 Identities=27% Similarity=0.495 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006404 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
..+.+.|..||..|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChh--hccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 448999999999999999999999999977 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006404 283 PPQNDVHIMADTLRKYFEVRWKA 305 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~ 305 (646)
+++|.||.+|..|++.|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998863
No 15
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=215.39 Aligned_cols=105 Identities=37% Similarity=0.672 Sum_probs=99.3
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHhhhh
Q 006404 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~--~~Y~s~~eF~~DvrLIf~N 277 (646)
.+....++.|..||..|++|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~N 92 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 92 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999985 599999999999999999999998 5999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|++||+++|.||.+|..|+++|++.|+++.
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 93 CAEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998874
No 16
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.93 E-value=1.8e-26 Score=210.26 Aligned_cols=104 Identities=27% Similarity=0.340 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006404 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
...++...|..||+.|++++.+++|..||++. .+||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~--~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDPSAFFSFPVTDF--IAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSGGGTSSSCCCTT--TSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccHHhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
||++||.||.+|..|++.|++.|..+
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.93 E-value=2.3e-26 Score=213.00 Aligned_cols=106 Identities=24% Similarity=0.345 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHHcCC-------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 006404 202 NAMLMKQCENLLTRLMSHQ-------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~-------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLI 274 (646)
...+.+.|..||+.|++++ .+++|..||+. ..+||||+||++||||+||++||.+|.|.++.+|.+||+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~--~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSR--KELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCT--TTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCc--ccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4779999999999999885 58999999985 48999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 006404 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (646)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k 309 (646)
|.||++||+++|.||.+|..|+++|++.|+.|...
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999998754
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=2.3e-26 Score=211.44 Aligned_cols=103 Identities=23% Similarity=0.406 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHc------CCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 006404 203 AMLMKQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~------~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (646)
..+.+.|..||+.|++ |+.+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRS--ELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCcc--ccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999 55679999999855 899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
||++||+++|.||.+|..|+++|++.|++++
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.93 E-value=6.6e-26 Score=211.23 Aligned_cols=108 Identities=26% Similarity=0.416 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006404 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
....+...|..||+.|++|+.+|+|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++
T Consensus 10 ~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 87 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMK 87 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCcchhhcCCCChh--hcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 281 YNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
||+++|.||.+|..|++.|+..|+.+...+
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 88 YNARDTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876543
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=6.4e-26 Score=207.35 Aligned_cols=109 Identities=33% Similarity=0.474 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 006404 201 SNAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~------s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLI 274 (646)
....|.+.|..|++.|++++. +++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||+||
T Consensus 5 ~p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 82 (120)
T 3ljw_A 5 SPAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKV--QYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLL 82 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcc--cCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 357789999999999999876 99999998854 8999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006404 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLP 311 (646)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k~p 311 (646)
|.||++||+++|.||.+|..|+++|++.|++|+...+
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~~ 119 (120)
T 3ljw_A 83 AKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999986543
No 21
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=8.8e-26 Score=207.40 Aligned_cols=103 Identities=31% Similarity=0.393 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006404 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
..+...|..||..|++++.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDA--IAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYN 89 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChh--hccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999976 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 283 PPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
++++.||.+|..|++.|++.|.+..
T Consensus 90 ~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 90 RPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643
No 22
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=207.19 Aligned_cols=104 Identities=24% Similarity=0.365 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 006404 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (646)
..++..|..|++.|++++ .+++|..||+. ..+||||++|++||||+||++||+++.|.++.+|.+||+|||.
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~--~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 81 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKR--RNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFN 81 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCG--GGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCc--ccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999984 59999999985 4899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006404 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (646)
||++||+++|.||.+|..|+++|++.|+++..
T Consensus 82 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 82 NAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998864
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=207.23 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 006404 202 NAMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTF 275 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf 275 (646)
...+.+.|..|++.|+++. .+|+|..||+.. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKK--KNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGG--GCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcc--cCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999975 489999999966 89999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 276 SNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 276 ~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
.||++||+++|.||.+|..|+++|++.|+++...+
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l 119 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQI 119 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887654
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.2e-25 Score=206.74 Aligned_cols=107 Identities=23% Similarity=0.348 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHHHHHHcCCC------CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 006404 201 SNAMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLT 274 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~------s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLI 274 (646)
....+..+|..|++.|.++.. +++|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+||
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~--~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKK--KYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLM 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChh--hCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 357899999999999998754 99999999854 9999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 006404 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (646)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k 309 (646)
|.||++||+++|.||.+|..|++.|++.|+++...
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 92 FENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998754
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.91 E-value=7e-25 Score=209.73 Aligned_cols=107 Identities=28% Similarity=0.505 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHH-HHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006404 202 NAMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 202 ~~~~~k~c~~IL~~-L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
...+...+..|+.. |+.++.+|+|..||++. .+||||+||++||||+||++||.++.|.++.+|.+||+|||.||++
T Consensus 27 ~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCchhhcCcCChh--hcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455555555554 66789999999999966 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 281 YNPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
||++++.||.+|..|.+.|+..|+++...+
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887554
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.91 E-value=8.1e-25 Score=211.62 Aligned_cols=104 Identities=31% Similarity=0.547 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006404 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
+....+..|..||..|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||+||++
T Consensus 69 l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 146 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN--DAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRY 146 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc--cCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 281 YNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
||++++.||.+|..|+++|++.|+.+
T Consensus 147 yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 147 YNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988754
No 27
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=4.2e-24 Score=208.65 Aligned_cols=104 Identities=38% Similarity=0.687 Sum_probs=99.0
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHhhhh
Q 006404 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS--GQYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~--~~Y~s~~eF~~DvrLIf~N 277 (646)
.+...+++.|..||..|+.|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||.|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhcccccc---CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999984 499999999999999999999998 7999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006404 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
|++||++++.||.+|..|+++|++.|+++
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999875
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=202.47 Aligned_cols=101 Identities=25% Similarity=0.378 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCC-------CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 006404 205 LMKQCENLLTRLMSHQF-------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~-------s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (646)
...+|..|++.|+++.. +++|..||+.. .+||||+||++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKK--DYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchh--hCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46788888888888654 89999998854 8999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|++||++++.||.+|..|+++|++.|+++.
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 132 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELG 132 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999875
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.90 E-value=7.8e-24 Score=196.16 Aligned_cols=101 Identities=35% Similarity=0.411 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...+...|..++..|+.|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTT--TCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChh--hcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999977 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH
Q 006404 282 NPPQNDV----HIMADTLRKYFEVRWK 304 (646)
Q Consensus 282 N~~~S~V----~~~A~~L~~~Fe~~~k 304 (646)
|++++++ +.+|..|++.|...++
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 7888888888887775
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=205.24 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=94.7
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccC--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHh
Q 006404 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIK--HPMDLGTIKCKITSG---QYSDPLAFAADVRLT 274 (646)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk--~PMDL~tIkkKL~~~---~Y~s~~eF~~DvrLI 274 (646)
.+....+++|..||..|+.|+.+|+|.+||+ |+||.||+ +||||+||++||+++ .|.++.+|.+||+||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 3556678899999999999999999999998 67999998 899999999999999 999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 275 FSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 275 f~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|+||++|| +++.||.+|..|+++|++.|+++.
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~ 177 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAF 177 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 589999999999999999999874
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=3.7e-23 Score=213.00 Aligned_cols=107 Identities=24% Similarity=0.452 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...|...|..||..|++|+.+++|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||+||++|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChh--hcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 4579999999999999999999999999977 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
|+++|.||.+|..|.+.|++.|+++..++
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~ 118 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKEDKL 118 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999875443
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=6.4e-23 Score=190.40 Aligned_cols=98 Identities=31% Similarity=0.429 Sum_probs=91.6
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 006404 200 SSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (646)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (646)
....+|...|..||+.|++|+.+++|..| +||||+||++||||+||++||.++.|.++.+|.+||+|||.||+
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~ 80 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNAL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999997 89999999999999999999999999999999999999999999
Q ss_pred ccCCCCCH----HHHHHHHHHHHHHHHHH
Q 006404 280 TYNPPQND----VHIMADTLRKYFEVRWK 304 (646)
Q Consensus 280 ~YN~~~S~----V~~~A~~L~~~Fe~~~k 304 (646)
+||+++|+ ||.+|..|++.|...++
T Consensus 81 ~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 81 EYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp HSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 99999995 57899999999987764
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.88 E-value=5.8e-23 Score=204.30 Aligned_cols=105 Identities=35% Similarity=0.632 Sum_probs=99.4
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhh
Q 006404 199 SSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTF 275 (646)
Q Consensus 199 ~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~---~~Y~s~~eF~~DvrLIf 275 (646)
..+...+++.|..||..|++|+.+++|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||
T Consensus 76 ~~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~ 152 (207)
T 3u5n_A 76 QGLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIF 152 (207)
T ss_dssp CSSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999985 599999999999999999999997 79999999999999999
Q ss_pred hhhcccCC-----------------CCCHHHHHHHHHHHHHHHHHHHH
Q 006404 276 SNAMTYNP-----------------PQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 276 ~NA~~YN~-----------------~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
+||++||+ +++.|+.+|..|+.+|++.|+++
T Consensus 153 ~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~ 200 (207)
T 3u5n_A 153 KNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 200 (207)
T ss_dssp HHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 99999999999999999999886
No 34
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=8.3e-23 Score=213.21 Aligned_cols=105 Identities=23% Similarity=0.438 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...+...|..||+.|++|+.+++|..||++. .+||||+||++||||+||++||+++.|.++.+|.+||+|||+||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~--~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCch--hcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006404 282 NPPQNDVHIMADTLRKYFEVRWKAIEK 308 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (646)
|+++++||.+|..|.++|++.|+.+..
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~ 149 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKED 149 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHH
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchh
Confidence 999999999999999999988876543
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.87 E-value=2.2e-22 Score=207.20 Aligned_cols=106 Identities=28% Similarity=0.508 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHH-HHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 203 AMLMKQCENLLTR-LMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 203 ~~~~k~c~~IL~~-L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
..+...|..|+.. |++|+.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 135 ~~~~~il~~i~~~~l~~~~~~~~F~~pv~~~--~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~y 212 (265)
T 3uv5_A 135 VAFSFILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 212 (265)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHhCCCChh--HhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3455566666654 78899999999999966 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
|+++|.||.+|..|+..|+..|+.+...+
T Consensus 213 N~~~s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 213 NGPESQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999886554
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=204.18 Aligned_cols=101 Identities=29% Similarity=0.539 Sum_probs=92.4
Q ss_pred HHHHHH-HHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 006404 208 QCENLL-TRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (646)
Q Consensus 208 ~c~~IL-~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S 286 (646)
.+..++ ..|++++.+|+|..||++. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|
T Consensus 173 ~l~~i~~~~l~~~~~s~~F~~pvd~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 173 ILDNIVTQKMMAVPDSWPFHHPVNKK--FVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHTGGGSTTCGGGTSCCCTT--TSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhhhhhhcCcchhHHHhccccc--ccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344444 3478899999999999965 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 006404 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
.||.+|..|++.|+..|..+...+
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~l 274 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEHL 274 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.83 E-value=4.4e-21 Score=201.79 Aligned_cols=86 Identities=30% Similarity=0.492 Sum_probs=82.9
Q ss_pred cCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHH
Q 006404 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRK 297 (646)
Q Consensus 218 ~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~ 297 (646)
.|+.+|+|..||++. .+||||+||++||||+||++||++|.|.++.+|.+||+|||+||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~--~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTT--TCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChh--hcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467899999999976 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 006404 298 YFEVRWKA 305 (646)
Q Consensus 298 ~Fe~~~k~ 305 (646)
+|+..|++
T Consensus 255 ~f~~~~~~ 262 (311)
T 2r0y_A 255 YFNYLIQK 262 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.82 E-value=6.6e-21 Score=204.28 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=82.5
Q ss_pred CCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH
Q 006404 219 HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKY 298 (646)
Q Consensus 219 ~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~ 298 (646)
|+.+|+|..||++. .+||||+||++||||+||++||.++.|.++.+|.+||+|||+||++||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~--~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTT--TCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChh--hcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 67899999999976 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 006404 299 FEVRWKA 305 (646)
Q Consensus 299 Fe~~~k~ 305 (646)
|+..|++
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=1.4e-19 Score=193.94 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcC--CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHhhhhhcc
Q 006404 204 MLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 204 ~~~k~c~~IL~~L~~~--~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~-s~~eF~~DvrLIf~NA~~ 280 (646)
.+...|..+|+.|.+. ..+++|..||+. ..+||||+||++||||+||++|| +.|. ++.+|.+||+|||.||++
T Consensus 78 ~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~--~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 78 KFNRFISFTLDVLIDKYKDIFKDFIKLPSR--KFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp THHHHHHHHHHHHHHHTHHHHGGGSSCCCT--TTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccHHhcCCCCc--ccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 3567899999998765 457999999884 48999999999999999999998 5555 899999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
||+++|.||.+|..|+++|+..|.+..
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999998764
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.76 E-value=2.9e-19 Score=187.93 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHcC--CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHhhhhhc
Q 006404 203 AMLMKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYS-DPLAFAADVRLTFSNAM 279 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~--~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~-s~~eF~~DvrLIf~NA~ 279 (646)
..|...|..+|..+.+. ..+++|..||+ +..+||||+||++||||+||++|| +.|. ++.+|.+||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~--~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPS--RKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCC--TTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCC--cccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 34667777777777764 36899999988 458999999999999999999999 5565 89999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006404 280 TYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
+||++||.||.+|..|+++|++.|.+..
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999998764
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=155.90 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 006404 203 AMLMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~------s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (646)
..++..+..|++.+++|.. +.+|... |.+. |+||. ++||+|.+|++||.+|.|+++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~L--Psk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEI--PAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTC--CSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHC--CCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3577889999999999853 6788874 4443 89998 999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 006404 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k 309 (646)
||++||.+||+||.+|..|+++|.+.+.++...
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999998765
No 42
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=7e-16 Score=134.22 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=68.2
Q ss_pred cccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhhc-CC-CCCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHh
Q 006404 351 KAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHS-AG-ETGEDELEIDIDALSDDTLFALRKLLDDYLLEK 425 (646)
Q Consensus 351 ~~e~~kr~mT~eEK~kL~~~I~~Lp~E~l~~Iv~IIk~~~-~~-~~~~dEIELDIdsL~~eTL~eL~~yV~~~L~ek 425 (646)
..++.+++||++||++|+.+|+.||++++.+||+||++++ .. ...++||||||+.|++.|||+|++||.+||+.+
T Consensus 10 ~~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 10 EEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TTTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 3556789999999999999999999999999999999998 43 357899999999999999999999999998765
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.44 E-value=1.4e-13 Score=134.40 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006404 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
..++...+..||..|..|+.+++|+.. .++.||||.||++||+.|.|.++.+|..||.|||+||..|
T Consensus 73 ~~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 73 EKELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 456778889999999999999999862 2599999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 006404 282 NPPQNDVHIMADTLRKYFEVRWKAIEKKLP 311 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~~k~p 311 (646)
|.+.+.+..++..|+.+|++.++.+-..++
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999988754444
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=93.52 E-value=0.099 Score=47.21 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhhcc-cChHHHHHHHhhhcCCCCCCCcEEEEcCCCCHHHHHHHHHHHH
Q 006404 360 TNEEKRILSTELEALLE-ELPESIIDFLKEHSAGETGEDELEIDIDALSDDTLFALRKLLD 419 (646)
Q Consensus 360 T~eEK~kL~~~I~~Lp~-E~l~~Iv~IIk~~~~~~~~~dEIELDIdsL~~eTL~eL~~yV~ 419 (646)
-.+|-+.|...|..|.. +.+.+||++|.+...+...+..+.||+-+||..|+++|+.|+.
T Consensus 60 y~~~L~~l~~rim~l~d~~~lq~iv~li~~tG~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 60 YLDELVELHRRLMTLRERHILQQIVNLIEETGHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp THHHHHHHHHHHHTCCCCSSHHHHHHHHHTSCCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhcCceeeecccccceeeccCHHHHHHHHHHHH
Confidence 46788999999999987 6689999999988778888999999999999999999999863
No 45
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=34.58 E-value=38 Score=22.92 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhhh
Q 006404 598 RAALLRNRFADTILKAREKALE 619 (646)
Q Consensus 598 raa~l~~rfad~i~ka~~k~l~ 619 (646)
|..+|..|=.++|+-||.|-|+
T Consensus 6 Rq~~Lq~Rk~~mi~~ARrryl~ 27 (28)
T 3h8k_B 6 RQRMLVQRKDELLQQARKRFLN 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5567999999999999998775
No 46
>1uty_A Non-structural protein 2; viral protein, RNA binding protein; 2.4A {Bluetongue virus} SCOP: b.147.1.1
Probab=21.86 E-value=18 Score=34.59 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 006404 106 RRSLELKLKTDLEQVRVLQKK 126 (646)
Q Consensus 106 ~~~L~~rl~~eLeqvR~l~kk 126 (646)
.++||+||+.|.|+.|..+.+
T Consensus 154 Vre~RqK~ReeRE~~~~~~~~ 174 (187)
T 1uty_A 154 IRELRQKIKNERESAPRLQVH 174 (187)
T ss_dssp HHHHCCC--------------
T ss_pred HHHHHHHHHHHhhhhhhhccc
Confidence 899999999999998887653
Done!