Query 006407
Match_columns 646
No_of_seqs 481 out of 2584
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 00:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.8 1E-20 3.5E-25 169.2 13.3 101 460-640 2-102 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.8 1.5E-20 5E-25 167.5 12.0 99 458-636 3-101 (105)
3 3osg_A MYB21; transcription-DN 99.8 6.6E-20 2.3E-24 168.6 13.0 101 458-639 10-110 (126)
4 1h8a_C AMV V-MYB, MYB transfor 99.8 1E-19 3.5E-24 167.7 11.6 99 458-636 26-124 (128)
5 3zqc_A MYB3; transcription-DNA 99.8 4E-19 1.4E-23 164.5 10.6 98 459-636 2-99 (131)
6 1h89_C C-MYB, MYB proto-oncoge 99.7 3E-18 1E-22 163.6 11.0 99 458-636 57-155 (159)
7 2dn9_A DNAJ homolog subfamily 99.7 5.1E-18 1.7E-22 143.2 6.1 73 89-178 2-74 (79)
8 2ctp_A DNAJ homolog subfamily 99.7 9.3E-18 3.2E-22 141.3 7.4 72 89-178 2-73 (78)
9 1bq0_A DNAJ, HSP40; chaperone, 99.7 2.7E-18 9.2E-23 152.4 4.3 70 93-179 2-71 (103)
10 2ej7_A HCG3 gene; HCG3 protein 99.7 9.9E-18 3.4E-22 142.4 7.3 73 90-178 5-77 (82)
11 1h89_C C-MYB, MYB proto-oncoge 99.7 7.8E-18 2.7E-22 160.7 6.4 99 458-635 5-103 (159)
12 2ctr_A DNAJ homolog subfamily 99.7 1.6E-17 5.6E-22 143.2 6.3 72 89-178 2-73 (88)
13 1hdj_A Human HSP40, HDJ-1; mol 99.7 1.4E-17 4.7E-22 140.0 5.5 68 93-178 2-69 (77)
14 2och_A Hypothetical protein DN 99.7 1.7E-17 5.8E-22 138.0 5.8 68 91-178 5-72 (73)
15 2yua_A Williams-beuren syndrom 99.7 1.2E-17 4E-22 147.3 4.0 72 90-178 13-84 (99)
16 1wjz_A 1700030A21RIK protein; 99.7 3.6E-17 1.2E-21 142.4 6.8 78 90-178 12-89 (94)
17 2cug_A Mkiaa0962 protein; DNAJ 99.7 3.2E-17 1.1E-21 141.4 5.4 70 91-178 14-83 (88)
18 2dmx_A DNAJ homolog subfamily 99.7 4.4E-17 1.5E-21 141.5 6.3 73 90-178 5-77 (92)
19 2ctw_A DNAJ homolog subfamily 99.7 1.2E-17 4E-22 149.9 2.6 72 90-178 13-84 (109)
20 2ctq_A DNAJ homolog subfamily 99.7 2.5E-17 8.7E-22 148.4 3.8 71 91-178 17-87 (112)
21 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 2.5E-17 8.5E-22 147.6 3.4 91 91-200 12-103 (109)
22 1wgx_A KIAA1903 protein; MYB D 99.7 6.7E-17 2.3E-21 133.6 5.2 59 586-644 7-65 (73)
23 2o37_A Protein SIS1; HSP40, J- 99.6 8.1E-17 2.8E-21 140.0 5.2 68 91-178 5-72 (92)
24 2lgw_A DNAJ homolog subfamily 99.6 9.1E-17 3.1E-21 141.7 4.5 69 94-178 2-70 (99)
25 1gh6_A Large T antigen; tumor 99.6 2.9E-16 9.8E-21 141.9 4.4 67 92-179 6-74 (114)
26 3apq_A DNAJ homolog subfamily 99.6 4.8E-16 1.6E-20 153.2 6.4 69 94-179 2-70 (210)
27 2cqr_A RSGI RUH-043, DNAJ homo 99.6 5.8E-16 2E-20 128.7 5.2 58 584-641 15-72 (73)
28 2cjj_A Radialis; plant develop 99.6 2.4E-15 8.1E-20 130.7 8.4 58 587-644 8-65 (93)
29 2pf4_E Small T antigen; PP2A, 99.6 3.3E-16 1.1E-20 151.0 1.7 90 92-202 9-106 (174)
30 2ys8_A RAB-related GTP-binding 99.6 8.5E-16 2.9E-20 133.1 3.9 62 93-172 26-87 (90)
31 3lz8_A Putative chaperone DNAJ 99.6 2.8E-16 9.4E-21 166.5 0.0 70 90-177 24-93 (329)
32 2l6l_A DNAJ homolog subfamily 99.5 3.2E-15 1.1E-19 142.0 5.9 77 90-177 6-82 (155)
33 3hho_A CO-chaperone protein HS 99.5 3.6E-15 1.2E-19 144.4 5.5 72 93-176 3-76 (174)
34 1fpo_A HSC20, chaperone protei 99.5 4.1E-15 1.4E-19 143.6 5.4 72 94-177 1-74 (171)
35 2cqq_A RSGI RUH-037, DNAJ homo 99.5 1.1E-14 3.8E-19 120.7 7.1 54 586-640 7-60 (72)
36 1faf_A Large T antigen; J doma 99.5 5.3E-15 1.8E-19 125.1 4.1 61 93-174 10-72 (79)
37 4eef_G F-HB80.4, designed hema 99.5 1.6E-15 5.5E-20 124.1 0.2 47 587-633 20-66 (74)
38 3bvo_A CO-chaperone protein HS 99.5 1.2E-14 4.2E-19 144.3 6.4 75 92-176 41-115 (207)
39 1iur_A KIAA0730 protein; DNAJ 99.5 5.9E-15 2E-19 127.3 3.6 66 90-171 12-77 (88)
40 3ag7_A Putative uncharacterize 99.5 1.2E-14 4.2E-19 129.5 5.5 68 90-168 37-104 (106)
41 1n4c_A Auxilin; four helix bun 99.5 1.1E-14 3.7E-19 141.2 5.2 70 90-173 113-182 (182)
42 2qwo_B Putative tyrosine-prote 99.5 2.7E-14 9.2E-19 123.9 4.7 59 94-166 33-91 (92)
43 2guz_A Mitochondrial import in 99.4 1.2E-13 4.2E-18 114.3 3.6 61 91-171 11-71 (71)
44 3uo3_A J-type CO-chaperone JAC 99.4 9E-14 3.1E-18 135.3 2.6 67 91-176 8-80 (181)
45 3apo_A DNAJ homolog subfamily 99.3 1.5E-13 5.2E-18 160.4 0.5 72 90-178 17-88 (780)
46 2yum_A ZZZ3 protein, zinc fing 99.3 1.8E-12 6.2E-17 108.3 6.5 61 582-642 3-66 (75)
47 2cqq_A RSGI RUH-037, DNAJ homo 99.3 4.5E-12 1.5E-16 105.1 7.3 50 458-509 7-56 (72)
48 1h8a_C AMV V-MYB, MYB transfor 99.3 3.8E-12 1.3E-16 117.0 7.1 46 587-635 27-72 (128)
49 1wgx_A KIAA1903 protein; MYB D 99.2 1.1E-11 3.6E-16 102.6 6.6 50 458-508 7-56 (73)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.9E-11 1E-15 100.4 7.0 51 458-509 17-67 (73)
51 1x41_A Transcriptional adaptor 99.1 6.5E-11 2.2E-15 94.7 7.1 50 583-635 4-53 (60)
52 4eef_G F-HB80.4, designed hema 99.1 7.8E-12 2.7E-16 102.4 1.2 48 458-506 19-66 (74)
53 2cjj_A Radialis; plant develop 99.1 8.8E-11 3E-15 102.0 6.9 51 458-509 7-57 (93)
54 2dim_A Cell division cycle 5-l 99.1 7.7E-11 2.6E-15 97.1 5.7 48 458-509 8-55 (70)
55 2d9a_A B-MYB, MYB-related prot 99.1 2.5E-10 8.6E-15 91.1 7.1 51 582-635 3-53 (60)
56 2din_A Cell division cycle 5-l 99.0 3.3E-10 1.1E-14 92.2 6.9 57 582-643 4-60 (66)
57 2cu7_A KIAA1915 protein; nucle 99.0 4.6E-10 1.6E-14 93.0 7.5 51 582-636 4-54 (72)
58 1guu_A C-MYB, MYB proto-oncoge 99.0 3.9E-10 1.3E-14 87.4 6.3 47 587-636 3-49 (52)
59 2yus_A SWI/SNF-related matrix- 99.0 2.1E-10 7.3E-15 96.7 4.8 46 586-635 17-62 (79)
60 2elk_A SPCC24B10.08C protein; 99.0 8.6E-10 2.9E-14 87.6 7.4 46 587-635 9-55 (58)
61 1gvd_A MYB proto-oncogene prot 99.0 8.4E-10 2.9E-14 85.5 5.9 46 587-635 3-48 (52)
62 2yum_A ZZZ3 protein, zinc fing 98.9 1.5E-09 5.3E-14 90.4 7.4 51 458-509 7-59 (75)
63 1w0t_A Telomeric repeat bindin 98.9 2E-09 6.7E-14 83.8 6.5 46 588-636 3-50 (53)
64 2elk_A SPCC24B10.08C protein; 98.9 2.3E-09 7.9E-14 85.1 7.0 50 458-510 8-57 (58)
65 2dim_A Cell division cycle 5-l 98.9 2.8E-09 9.7E-14 87.7 7.5 51 582-635 4-54 (70)
66 1x41_A Transcriptional adaptor 98.9 5.1E-09 1.7E-13 83.6 7.4 49 458-510 7-55 (60)
67 3sjm_A Telomeric repeat-bindin 98.9 3.9E-09 1.3E-13 85.4 6.8 48 586-636 10-59 (64)
68 2eqr_A N-COR1, N-COR, nuclear 98.8 6.6E-09 2.2E-13 83.3 7.6 45 586-634 11-55 (61)
69 1guu_A C-MYB, MYB proto-oncoge 98.8 3.5E-09 1.2E-13 81.9 5.8 47 459-509 3-49 (52)
70 2llk_A Cyclin-D-binding MYB-li 98.8 2.4E-09 8.3E-14 88.8 4.9 52 582-638 18-69 (73)
71 1gvd_A MYB proto-oncogene prot 98.8 4.1E-09 1.4E-13 81.6 5.5 47 459-509 3-49 (52)
72 2ltp_A Nuclear receptor corepr 98.3 5.8E-10 2E-14 96.2 0.0 50 582-635 11-60 (89)
73 1ign_A Protein (RAP1); RAP1,ye 98.8 2.2E-08 7.6E-13 99.7 11.0 51 458-509 7-59 (246)
74 2d9a_A B-MYB, MYB-related prot 98.8 9.1E-09 3.1E-13 82.0 6.7 48 458-509 7-54 (60)
75 1ity_A TRF1; helix-turn-helix, 98.8 1.2E-08 4.2E-13 83.6 7.4 50 584-636 7-58 (69)
76 1w0t_A Telomeric repeat bindin 98.7 2.2E-08 7.4E-13 77.9 6.1 48 459-509 2-50 (53)
77 2yus_A SWI/SNF-related matrix- 98.7 2.2E-08 7.6E-13 84.4 6.6 46 458-508 17-62 (79)
78 3sjm_A Telomeric repeat-bindin 98.7 2.4E-08 8.2E-13 80.8 6.2 49 458-509 10-59 (64)
79 2y4t_A DNAJ homolog subfamily 98.7 1.1E-08 3.7E-13 108.4 5.3 69 93-175 381-449 (450)
80 2cu7_A KIAA1915 protein; nucle 98.7 4.3E-08 1.5E-12 81.1 7.1 48 457-509 7-54 (72)
81 1ity_A TRF1; helix-turn-helix, 98.6 6.6E-08 2.3E-12 79.2 6.5 49 458-509 9-58 (69)
82 2din_A Cell division cycle 5-l 98.6 9.7E-08 3.3E-12 77.5 6.6 46 458-509 8-53 (66)
83 1gv2_A C-MYB, MYB proto-oncoge 98.5 7.6E-08 2.6E-12 85.1 6.1 45 587-634 4-48 (105)
84 2k9n_A MYB24; R2R3 domain, DNA 98.5 1.1E-07 3.7E-12 84.6 5.8 44 588-634 2-45 (107)
85 2ckx_A NGTRF1, telomere bindin 98.4 2.3E-07 8E-12 78.8 6.2 46 589-637 2-51 (83)
86 2juh_A Telomere binding protei 98.4 2.8E-07 9.6E-12 83.5 6.8 50 457-509 15-67 (121)
87 3osg_A MYB21; transcription-DN 98.4 3.8E-07 1.3E-11 83.4 6.3 46 586-635 10-55 (126)
88 2yqk_A Arginine-glutamic acid 98.4 8.1E-07 2.8E-11 71.6 7.1 48 582-633 4-52 (63)
89 2roh_A RTBP1, telomere binding 98.4 5.6E-07 1.9E-11 81.6 6.8 50 457-509 29-81 (122)
90 2guz_B Mitochondrial import in 98.3 3.9E-07 1.3E-11 73.9 4.5 52 95-167 5-59 (65)
91 3zqc_A MYB3; transcription-DNA 98.3 2.5E-07 8.4E-12 85.2 3.3 45 588-635 3-47 (131)
92 2xag_B REST corepressor 1; ami 98.3 6.6E-07 2.2E-11 98.0 6.1 43 587-633 380-422 (482)
93 2crg_A Metastasis associated p 98.2 2.1E-06 7.2E-11 70.6 7.2 44 586-633 7-51 (70)
94 2llk_A Cyclin-D-binding MYB-li 98.2 1.2E-06 4.1E-11 72.6 5.8 45 458-508 22-66 (73)
95 2ltp_A Nuclear receptor corepr 97.5 1.5E-07 5E-12 81.1 0.0 47 458-509 15-61 (89)
96 2aje_A Telomere repeat-binding 98.2 1.7E-06 5.7E-11 76.6 6.6 51 584-637 10-64 (105)
97 2eqr_A N-COR1, N-COR, nuclear 98.2 2.6E-06 8.8E-11 68.1 6.9 45 458-507 11-55 (61)
98 2ckx_A NGTRF1, telomere bindin 98.2 2E-06 6.7E-11 73.1 5.9 46 460-509 1-50 (83)
99 2iw5_B Protein corest, REST co 98.2 1.6E-06 5.4E-11 85.7 5.8 43 587-633 133-175 (235)
100 1ofc_X ISWI protein; nuclear p 98.1 5.3E-06 1.8E-10 86.3 9.1 139 458-640 109-277 (304)
101 2roh_A RTBP1, telomere binding 98.1 7.6E-06 2.6E-10 74.2 8.7 51 584-637 28-82 (122)
102 2juh_A Telomere binding protei 98.1 2.8E-06 9.6E-11 76.9 5.6 52 583-637 13-68 (121)
103 1ign_A Protein (RAP1); RAP1,ye 98.0 3.2E-06 1.1E-10 84.3 5.4 50 586-635 7-58 (246)
104 4a69_C Nuclear receptor corepr 98.0 9.1E-06 3.1E-10 70.6 6.3 43 588-634 44-86 (94)
105 1x58_A Hypothetical protein 49 97.9 1.7E-05 6E-10 63.1 6.9 47 586-636 7-56 (62)
106 2aje_A Telomere repeat-binding 97.9 1.2E-05 4E-10 71.2 5.6 50 457-509 11-63 (105)
107 1ug2_A 2610100B20RIK gene prod 97.9 9.1E-05 3.1E-09 62.9 10.6 59 584-643 30-88 (95)
108 2lr8_A CAsp8-associated protei 97.0 2.6E-06 9E-11 68.5 0.0 54 588-643 15-68 (70)
109 2y9y_A Imitation switch protei 97.4 0.00043 1.5E-08 73.6 9.9 142 458-640 122-293 (374)
110 1x58_A Hypothetical protein 49 97.4 0.00023 7.8E-09 56.7 5.4 47 458-509 7-56 (62)
111 2iw5_B Protein corest, REST co 97.2 0.00032 1.1E-08 69.4 5.7 46 458-508 132-177 (235)
112 3hm5_A DNA methyltransferase 1 97.2 0.0009 3.1E-08 57.7 7.3 52 588-643 31-87 (93)
113 2yqk_A Arginine-glutamic acid 97.1 0.00076 2.6E-08 54.1 6.1 44 458-506 8-52 (63)
114 2crg_A Metastasis associated p 96.9 0.0019 6.5E-08 52.9 6.4 44 458-506 7-51 (70)
115 4b4c_A Chromodomain-helicase-D 96.8 0.0076 2.6E-07 59.2 11.9 49 458-507 6-55 (211)
116 4a69_C Nuclear receptor corepr 96.8 0.0015 5E-08 56.7 5.7 44 458-506 42-85 (94)
117 3hm5_A DNA methyltransferase 1 96.6 0.0031 1E-07 54.4 6.3 47 459-509 30-80 (93)
118 2lwx_A Zuotin; J-protein, mole 96.3 0.0031 1.1E-07 55.0 4.0 52 353-407 20-77 (108)
119 4gmq_A Putative ribosome assoc 96.1 0.005 1.7E-07 53.4 4.7 52 354-408 9-70 (103)
120 2xag_B REST corepressor 1; ami 95.9 0.007 2.4E-07 66.4 5.8 45 458-507 379-423 (482)
121 1fex_A TRF2-interacting telome 95.9 0.014 4.7E-07 46.1 6.0 46 588-633 3-54 (59)
122 1ofc_X ISWI protein; nuclear p 95.6 0.013 4.5E-07 60.9 5.9 49 588-639 111-159 (304)
123 2ebi_A DNA binding protein GT- 95.5 0.017 5.7E-07 48.8 5.4 57 588-644 5-71 (86)
124 2ebi_A DNA binding protein GT- 95.4 0.013 4.5E-07 49.5 4.5 51 459-509 4-63 (86)
125 1ug2_A 2610100B20RIK gene prod 95.4 0.062 2.1E-06 45.7 8.3 50 458-509 32-81 (95)
126 1fex_A TRF2-interacting telome 94.7 0.054 1.8E-06 42.7 5.7 49 460-509 3-57 (59)
127 4iej_A DNA methyltransferase 1 93.7 0.12 4.2E-06 44.3 6.3 47 459-509 30-80 (93)
128 4iej_A DNA methyltransferase 1 93.5 0.2 6.7E-06 43.0 7.3 50 588-641 31-85 (93)
129 2lr8_A CAsp8-associated protei 92.6 0.013 4.6E-07 47.2 0.0 47 460-509 15-61 (70)
130 4b4c_A Chromodomain-helicase-D 91.6 0.27 9.1E-06 48.0 6.5 52 586-638 6-59 (211)
131 1irz_A ARR10-B; helix-turn-hel 89.0 1.6 5.6E-05 34.8 7.8 52 587-639 7-60 (64)
132 2xb0_X Chromo domain-containin 78.8 14 0.00049 37.5 11.5 47 459-508 3-52 (270)
133 2xb0_X Chromo domain-containin 77.3 4.3 0.00015 41.3 7.1 52 588-640 4-57 (270)
134 1irz_A ARR10-B; helix-turn-hel 70.1 13 0.00046 29.5 6.8 48 458-506 6-54 (64)
135 2y9y_A Imitation switch protei 68.6 4.4 0.00015 43.0 4.8 41 588-632 124-165 (374)
136 2hzd_A Transcriptional enhance 58.5 11 0.00037 31.5 4.4 54 587-640 6-76 (82)
137 2pzi_A Probable serine/threoni 55.1 6 0.00021 44.9 3.2 32 94-128 629-662 (681)
138 2hzd_A Transcriptional enhance 39.2 71 0.0024 26.6 6.4 49 458-506 5-69 (82)
139 2i1j_A Moesin; FERM, coiled-co 36.7 59 0.002 36.4 7.4 43 249-291 306-355 (575)
140 2q2f_A Selenoprotein S; anti-p 33.4 1.8E+02 0.0061 24.3 7.8 24 288-311 35-58 (89)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.84 E-value=1e-20 Score=169.24 Aligned_cols=101 Identities=14% Similarity=0.303 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcch
Q 006407 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR 539 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~r 539 (646)
++||.||+.+|.++|..|+. .+|..||.+|| +||++||+.||.++|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L------------------------------ 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI-TRNPRQCRERWNNYI------------------------------ 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT-TSCHHHHHHHHHHHS------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC-CCCHHHHHHHHHHHH------------------------------
Confidence 57999999999999999954 37999999998 699999999999876
Q ss_pred hhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhh
Q 006407 540 EEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATA 619 (646)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~ 619 (646)
.|.....+||++||.+|..++..|| .+|..||..
T Consensus 48 ------------------------------------------~p~i~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~ 81 (107)
T 2k9n_A 48 ------------------------------------------NPALRTDPWSPEEDMLLDQKYAEYG----PKWNKISKF 81 (107)
T ss_dssp ------------------------------------------SSCCTTCCCCHHHHHHHHHHHHHTC----SCHHHHHHH
T ss_pred ------------------------------------------cccccccccCHHHHHHHHHHHHHhC----cCHHHHHHH
Confidence 1122335899999999999999997 479999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q 006407 620 VPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 620 Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
|||||..+|++||..|.....
T Consensus 82 l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 82 LKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhHH
Confidence 999999999999998876543
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.83 E-value=1.5e-20 Score=167.46 Aligned_cols=99 Identities=29% Similarity=0.525 Sum_probs=86.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..++||++|+.+|.++|..|+. .+|..||.+|+ |||.++|+.||.++|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l---------------------------- 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL---------------------------- 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHTT----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhc-CCCHHHHHHHHHhcc----------------------------
Confidence 3578999999999999999954 36999999998 699999999999865
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006407 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||++|+.+|..++..|| .+|..||
T Consensus 51 --------------------------------------------~p~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia 82 (105)
T 1gv2_A 51 --------------------------------------------NPEVKKTSWTEEEDRIIYQAHKRLG----NRWAEIA 82 (105)
T ss_dssp --------------------------------------------CCCCCCCCCCHHHHHHHHHHHHHHS----SCHHHHH
T ss_pred --------------------------------------------CCcccccCCCHHHHHHHHHHHHHhC----CCHHHHH
Confidence 1122335899999999999999997 4799999
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 006407 618 TAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~ 636 (646)
..|||||..+|++||..|.
T Consensus 83 ~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 83 KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp TTCTTCCHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHH
Confidence 9999999999999998763
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.82 E-value=6.6e-20 Score=168.64 Aligned_cols=101 Identities=24% Similarity=0.538 Sum_probs=88.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
+.++||+||+.+|.++|..| |+ +|..||.+|+ |||.+||+.||.++|
T Consensus 10 kk~~WT~eED~~L~~~v~~~--G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l---------------------------- 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQH--GS--DWKMIAATFP-NRNARQCRDRWKNYL---------------------------- 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHH--TT--CHHHHHHTCT-TCCHHHHHHHHHHHT----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHh--CC--CHHHHHHHcC-CCCHHHHHHHHhhhc----------------------------
Confidence 56899999999999999999 54 6999999998 699999999999876
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006407 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||.+||.+|..++..|| .+|..||
T Consensus 57 --------------------------------------------~p~~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia 88 (126)
T 3osg_A 57 --------------------------------------------APSISHTPWTAEEDALLVQKIQEYG----RQWAIIA 88 (126)
T ss_dssp --------------------------------------------STTSCCSCCCHHHHHHHHHHHHHHC----SCHHHHH
T ss_pred --------------------------------------------ccccccccCCHHHHHHHHHHHHHHC----cCHHHHH
Confidence 1112234799999999999999997 4799999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 006407 618 TAVPGKTVIQCKKKFASLKENF 639 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~~~v 639 (646)
..|||||..+|++||..|..-+
T Consensus 89 ~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 89 KFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=1e-19 Score=167.70 Aligned_cols=99 Identities=27% Similarity=0.521 Sum_probs=86.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..++||.||+.+|.++|+.|+. .+|..||.+|+ |||..+|+.||.++|
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l---------------------------- 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLK-GRIGKQCRERWHNHL---------------------------- 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSS-SCCHHHHHHHHHHTT----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhc-CCcHHHHHHHHHHhc----------------------------
Confidence 4679999999999999999954 37999999998 699999999999865
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006407 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||++||.+|..++..|| .+|..||
T Consensus 74 --------------------------------------------~p~~~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia 105 (128)
T 1h8a_C 74 --------------------------------------------NPEVKKTSWTEEEDRIIYQAHKRLG----NRWAEIA 105 (128)
T ss_dssp --------------------------------------------CSSSCCSCCCHHHHHHHHHHHHHHC----SCHHHHG
T ss_pred --------------------------------------------ccccccccCCHHHHHHHHHHHHHHC----cCHHHHH
Confidence 1112335799999999999999997 4799999
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 006407 618 TAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~ 636 (646)
..|||||..+|++||..|.
T Consensus 106 ~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 106 KLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp GGSTTCCHHHHHHHHHTTT
T ss_pred HHCCCCCHHHHHHHHHHHH
Confidence 9999999999999998663
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.78 E-value=4e-19 Score=164.47 Aligned_cols=98 Identities=18% Similarity=0.411 Sum_probs=85.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcc
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTT 538 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~ 538 (646)
.++||.||+.+|..+|..|+. ..|..||.+|+ |||++||+.||.++|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l----------------------------- 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFLP-NRSPKQCRERWFNHL----------------------------- 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCT-TSCHHHHHHHHHHHT-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHC-CCCHHHHHHHHhhcc-----------------------------
Confidence 368999999999999999943 36999999998 699999999999876
Q ss_pred hhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh
Q 006407 539 REEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT 618 (646)
Q Consensus 539 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~ 618 (646)
.|....++||.+||.+|..++..|| .+|..||.
T Consensus 49 -------------------------------------------~p~~~~~~Wt~eEd~~L~~~~~~~G----~~W~~Ia~ 81 (131)
T 3zqc_A 49 -------------------------------------------DPAVVKHAWTPEEDETIFRNYLKLG----SKWSVIAK 81 (131)
T ss_dssp -------------------------------------------STTCCCSCCCHHHHHHHHHHHHHSC----SCHHHHTT
T ss_pred -------------------------------------------CccccCCCCCHHHHHHHHHHHHHHC----cCHHHHHH
Confidence 1122234799999999999999997 47999999
Q ss_pred hCCCCCHHHHHHHHHHHH
Q 006407 619 AVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 619 ~Vpgrt~~~c~~Ryk~l~ 636 (646)
.|||||..+|++||..+.
T Consensus 82 ~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp TSTTCCHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHH
Confidence 999999999999997654
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.75 E-value=3e-18 Score=163.61 Aligned_cols=99 Identities=29% Similarity=0.525 Sum_probs=86.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..++||.+|+.+|.++|+.|+. .+|..||.+|+ |||..+|..+|.++|
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l---------------------------- 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL---------------------------- 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTST-TCCHHHHHHHHHHTT----------------------------
T ss_pred CCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHcC-CCCHHHHHHHHHHHh----------------------------
Confidence 4579999999999999999943 47999999998 699999999999865
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006407 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||++|+.+|..++..|| .+|..||
T Consensus 105 --------------------------------------------~p~~~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia 136 (159)
T 1h89_C 105 --------------------------------------------NPEVKKTSWTEEEDRIIYQAHKRLG----NRWAEIA 136 (159)
T ss_dssp --------------------------------------------CTTSCCSCCCHHHHHHHHHHHHHHC----SCHHHHH
T ss_pred --------------------------------------------CccccccCCChHHHHHHHHHHHHHC----CCHHHHH
Confidence 1112335899999999999999996 5899999
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 006407 618 TAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~ 636 (646)
..|||||..+|++||..|.
T Consensus 137 ~~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 137 KLLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp TTSTTCCHHHHHHHHHTTT
T ss_pred HHCCCCCHHHHHHHHHHHH
Confidence 9999999999999998763
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=143.23 Aligned_cols=73 Identities=37% Similarity=0.644 Sum_probs=65.5
Q ss_pred CCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006407 89 EGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168 (646)
Q Consensus 89 ~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~ 168 (646)
+.....|||+||||++ .++..+||++||+++++||||++++ .+.+.+.|+.|++||+||+||.
T Consensus 2 s~~~~~~~y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~~L~d~~ 64 (79)
T 2dn9_A 2 SSGSSGDYYQILGVPR---NASQKEIKKAYYQLAKKYHPDTNKD--------------DPKAKEKFSQLAEAYEVLSDEV 64 (79)
T ss_dssp CSSCCSCHHHHHTCCT---TCCHHHHHHHHHHHHHHTCTTTCSS--------------CTTHHHHHHHHHHHHHHHHSHH
T ss_pred CCCCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------CHHHHHHHHHHHHHHHHHCCHH
Confidence 4566789999999999 9999999999999999999999974 2236789999999999999999
Q ss_pred hhhhhcccCC
Q 006407 169 KRRIYDSTDE 178 (646)
Q Consensus 169 kR~~YDs~~~ 178 (646)
+|..||.++.
T Consensus 65 ~R~~YD~~g~ 74 (79)
T 2dn9_A 65 KRKQYDAYGS 74 (79)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHhccC
Confidence 9999999864
No 8
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9.3e-18 Score=141.33 Aligned_cols=72 Identities=40% Similarity=0.693 Sum_probs=64.8
Q ss_pred CCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006407 89 EGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168 (646)
Q Consensus 89 ~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~ 168 (646)
+.....|||+||||++ .++..+||++||+++++||||+++. ..+.+.|+.|++||+||+||.
T Consensus 2 s~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~---------------~~~~~~f~~i~~Ay~~L~d~~ 63 (78)
T 2ctp_A 2 SSGSSGDYYEILGVSR---GASDEDLKKAYRRLALKFHPDKNHA---------------PGATEAFKAIGTAYAVLSNPE 63 (78)
T ss_dssp CCSCSCCHHHHHTCCT---TCCHHHHHHHHHHHHTTSCTTTCSS---------------HHHHHHHHHHHHHHHHHTSHH
T ss_pred CCCCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHHCCHH
Confidence 3456789999999999 9999999999999999999999973 235789999999999999999
Q ss_pred hhhhhcccCC
Q 006407 169 KRRIYDSTDE 178 (646)
Q Consensus 169 kR~~YDs~~~ 178 (646)
+|..||.++.
T Consensus 64 ~R~~YD~~~~ 73 (78)
T 2ctp_A 64 KRKQYDQFGS 73 (78)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHHcCc
Confidence 9999999865
No 9
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.71 E-value=2.7e-18 Score=152.41 Aligned_cols=70 Identities=47% Similarity=0.790 Sum_probs=63.3
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006407 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ .+|.++||++||+|+++||||++++ ...+.+.|+.|++||+||+||.+|..
T Consensus 2 ~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~R~~ 64 (103)
T 1bq0_A 2 KQDYYEILGVSK---TAEEREIRKAYKRLAMKYHPDRNQG--------------DKEAEAKFKEIKEAYEVLTDSQKRAA 64 (103)
T ss_dssp CCCSTTTTSSCS---SCCHHHHHHHHHHHHTTTCTTTCTT--------------TCTHHHHHHHHTTTTTSTTCSHHHHH
T ss_pred CCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 468999999999 8999999999999999999999984 12357899999999999999999999
Q ss_pred hcccCCC
Q 006407 173 YDSTDEF 179 (646)
Q Consensus 173 YDs~~~~ 179 (646)
||..+..
T Consensus 65 YD~~~~~ 71 (103)
T 1bq0_A 65 YDQYGHA 71 (103)
T ss_dssp TTTSTTT
T ss_pred HHHHhhh
Confidence 9998764
No 10
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.9e-18 Score=142.45 Aligned_cols=73 Identities=47% Similarity=0.711 Sum_probs=65.1
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....|||+||||++ .++.++||+|||+++++||||+++.. ...+.+.|+.|++||+||+||.+
T Consensus 5 ~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~-------------~~~a~~~f~~i~~Ay~~L~d~~~ 68 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPR---QASSEAIKKAYRKLALKWHPDKNPEN-------------KEEAERRFKQVAEAYEVLSDAKK 68 (82)
T ss_dssp CSSSCCHHHHTTCCT---TCCHHHHHHHHHHHHTTSCTTTCSTT-------------HHHHHHHHHHHHHHHHHHSSTTH
T ss_pred CCCCcCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCc-------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence 345689999999999 99999999999999999999999742 23568899999999999999999
Q ss_pred hhhhcccCC
Q 006407 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|..||.++.
T Consensus 69 R~~YD~~g~ 77 (82)
T 2ej7_A 69 RDIYDRYGS 77 (82)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCc
Confidence 999999764
No 11
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.70 E-value=7.8e-18 Score=160.70 Aligned_cols=99 Identities=20% Similarity=0.498 Sum_probs=51.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..++||.||+.+|.++|..|+. .+|..||.+|+ +||++||+.||.++|
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l---------------------------- 52 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP-NRTDVQCQHRWQKVL---------------------------- 52 (159)
T ss_dssp ------------------------------------------CHHHHHHTTT----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcC-CCCHHHHHHHHHHcc----------------------------
Confidence 3568999999999999999954 36999999998 699999999999865
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006407 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||++||.+|..++..||. .+|..||
T Consensus 53 --------------------------------------------~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia 85 (159)
T 1h89_C 53 --------------------------------------------NPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIA 85 (159)
T ss_dssp --------------------------------------------CTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHH
T ss_pred --------------------------------------------CCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHH
Confidence 11223358999999999999999983 4799999
Q ss_pred hhCCCCCHHHHHHHHHHH
Q 006407 618 TAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l 635 (646)
..|||||..||++||..+
T Consensus 86 ~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 86 KHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp HTSTTCCHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHH
Confidence 999999999999999753
No 12
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=143.20 Aligned_cols=72 Identities=36% Similarity=0.686 Sum_probs=64.8
Q ss_pred CCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006407 89 EGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168 (646)
Q Consensus 89 ~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~ 168 (646)
+.....|||+||||++ .+|.++||++||+|+++||||+++. ..+.+.|+.|++||+||+||.
T Consensus 2 s~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~---------------~~a~~~f~~i~~Ay~~L~d~~ 63 (88)
T 2ctr_A 2 SSGSSGSYYDILGVPK---SASERQIKKAFHKLAMKYHPDKNKS---------------PDAEAKFREIAEAYETLSDAN 63 (88)
T ss_dssp CSCCCCSHHHHHTCCT---TCCHHHHHHHHHHHHHHTCTTTCCS---------------HHHHHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hHHHHHHHHHHHHHHHHCCHH
Confidence 3456789999999999 9999999999999999999999973 346789999999999999999
Q ss_pred hhhhhcccCC
Q 006407 169 KRRIYDSTDE 178 (646)
Q Consensus 169 kR~~YDs~~~ 178 (646)
+|..||..+.
T Consensus 64 ~R~~Yd~~~~ 73 (88)
T 2ctr_A 64 RRKEYDTLGH 73 (88)
T ss_dssp HHHHHHHTCH
T ss_pred HHHHHHHhCc
Confidence 9999999763
No 13
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.69 E-value=1.4e-17 Score=139.95 Aligned_cols=68 Identities=46% Similarity=0.810 Sum_probs=62.0
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006407 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ .+|.++||++||+++++||||++++ ..+.+.|+.|++||+||+||.+|..
T Consensus 2 ~~~~y~iLgv~~---~as~~~Ik~ayr~l~~~~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~~R~~ 63 (77)
T 1hdj_A 2 GKDYYQTLGLAR---GASDEEIKRAYRRQALRYHPDKNKE---------------PGAEEKFKEIAEAYDVLSDPRKREI 63 (77)
T ss_dssp CCCSHHHHTCCT---TCCHHHHHHHHHHHHHTTCTTTCCC---------------TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHHCCHHHHHH
Confidence 468999999999 9999999999999999999999874 2357899999999999999999999
Q ss_pred hcccCC
Q 006407 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 64 Yd~~~~ 69 (77)
T 1hdj_A 64 FDRYGE 69 (77)
T ss_dssp HHHTCG
T ss_pred HHHHcc
Confidence 999864
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.69 E-value=1.7e-17 Score=138.03 Aligned_cols=68 Identities=41% Similarity=0.729 Sum_probs=61.1
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
....|||+||||++ .+|..+||++||+++++||||++++. .+.|+.|+.||+||+||.+|
T Consensus 5 ~~~~~~y~iLgl~~---~a~~~eIk~ayr~l~~~~HPD~~~~~-----------------~~~f~~i~~Ay~~L~d~~~R 64 (73)
T 2och_A 5 VKETGYYDVLGVKP---DASDNELKKAYRKMALKFHPDKNPDG-----------------AEQFKQISQAYEVLSDEKKR 64 (73)
T ss_dssp -CCCCHHHHHTCCT---TCCHHHHHHHHHHHHHHTCTTTCTTC-----------------HHHHHHHHHHHHHHTSHHHH
T ss_pred cCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCcCH-----------------HHHHHHHHHHHHHHCCHHHH
Confidence 45689999999999 99999999999999999999999741 46899999999999999999
Q ss_pred hhhcccCC
Q 006407 171 RIYDSTDE 178 (646)
Q Consensus 171 ~~YDs~~~ 178 (646)
..||.+|.
T Consensus 65 ~~YD~~g~ 72 (73)
T 2och_A 65 QIYDQGGE 72 (73)
T ss_dssp HHHHHTC-
T ss_pred HHHHhcCC
Confidence 99999764
No 15
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-17 Score=147.28 Aligned_cols=72 Identities=32% Similarity=0.519 Sum_probs=64.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.+...|||+||||++ .++.++||+|||+|+++||||++++ ...+.+.|+.|++||+||+||.+
T Consensus 13 ~~~~~~~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 13 SYSRTALYDLLGVPS---TATQAQIKAAYYRQCFLYHPDRNSG--------------SAEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp SSCSSHHHHHHTCCT---TCCHHHHHHHHHHHHHHSCTTTCSS--------------CSHHHHHHHHHHHHHHHTTSHHH
T ss_pred CCCccCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------CHHHHHHHHHHHHHHHHHCCHHH
Confidence 566789999999999 9999999999999999999999974 23467899999999999999999
Q ss_pred hhhhcccCC
Q 006407 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|..||....
T Consensus 76 R~~YD~~l~ 84 (99)
T 2yua_A 76 RRKYDRGLL 84 (99)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhcc
Confidence 999998653
No 16
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.68 E-value=3.6e-17 Score=142.45 Aligned_cols=78 Identities=27% Similarity=0.479 Sum_probs=66.2
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.+...|||+||||++ .++..+||+|||+++++||||+++..... .....+.+.|+.|++||+||+||.+
T Consensus 12 ~~~~~~~y~iLgv~~---~as~~eIk~aYr~l~~~~HPDk~~~~~~~--------~~~~~~~~~f~~i~~Ay~~L~d~~~ 80 (94)
T 1wjz_A 12 QTLKKDWYSILGADP---SANMSDLKQKYQKLILLYHPDKQSADVPA--------GTMEECMQKFIEIDQAWKILGNEET 80 (94)
T ss_dssp SSSCSCHHHHTTCCT---TCCHHHHHHHHHHTTSSSCSTTCCTTCCH--------HHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred cCCCCChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCCh--------hhhHHHHHHHHHHHHHHHHHCCHHH
Confidence 456789999999999 99999999999999999999998742111 1134578999999999999999999
Q ss_pred hhhhcccCC
Q 006407 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|..||....
T Consensus 81 R~~YD~~l~ 89 (94)
T 1wjz_A 81 KKKYDLQRS 89 (94)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHcc
Confidence 999998753
No 17
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.2e-17 Score=141.39 Aligned_cols=70 Identities=34% Similarity=0.587 Sum_probs=63.6
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
....|||+||||++ .++.++||++||+++++||||++++ ..+.+.|+.|++||+||+||.+|
T Consensus 14 ~~~~d~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~---------------~~~~~~f~~i~~Ay~~L~d~~~R 75 (88)
T 2cug_A 14 ALDFDPYRVLGVSR---TASQADIKKAYKKLAREWHPDKNKD---------------PGAEDRFIQISKAYEILSNEEKR 75 (88)
T ss_dssp SSSSCHHHHHTCCT---TCCHHHHHHHHHHHHHHSCTTTCCS---------------TTHHHHHHHHHHHHHHHHSHHHH
T ss_pred cCCCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHHCCHHHH
Confidence 45689999999999 9999999999999999999999974 23578999999999999999999
Q ss_pred hhhcccCC
Q 006407 171 RIYDSTDE 178 (646)
Q Consensus 171 ~~YDs~~~ 178 (646)
..||.++.
T Consensus 76 ~~YD~~g~ 83 (88)
T 2cug_A 76 TNYDHYGS 83 (88)
T ss_dssp HHHHHHTT
T ss_pred HHHHHcCC
Confidence 99999865
No 18
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-17 Score=141.53 Aligned_cols=73 Identities=44% Similarity=0.714 Sum_probs=64.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....|||+||||++ .++.++||++||+|+++||||+++.. ...+.+.|+.|++||+||+||.+
T Consensus 5 ~~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~-------------~~~a~~~f~~i~~Ay~~L~d~~~ 68 (92)
T 2dmx_A 5 SSGMANYYEVLGVQA---SASPEDIKKAYRKLALRWHPDKNPDN-------------KEEAEKKFKLVSEAYEVLSDSKK 68 (92)
T ss_dssp CCCCCCHHHHHTCCT---TCCTTHHHHHHHHHHHHTCTTTCSSC-------------SHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCCcCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCcc-------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence 345579999999999 89999999999999999999999742 24568899999999999999999
Q ss_pred hhhhcccCC
Q 006407 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|..||..+.
T Consensus 69 R~~Yd~~~~ 77 (92)
T 2dmx_A 69 RSLYDRAGC 77 (92)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCc
Confidence 999999764
No 19
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.2e-17 Score=149.89 Aligned_cols=72 Identities=43% Similarity=0.702 Sum_probs=64.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....|||+||||++ .||.++||++||+|+++||||++++ ...+.+.|+.|++||+||+||.+
T Consensus 13 ~~~~~~~Y~vLgv~~---~as~~eIk~aYr~la~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~ 75 (109)
T 2ctw_A 13 STSGESLYHVLGLDK---NATSDDIKKSYRKLALKYHPDKNPD--------------NPEAADKFKEINNAHAILTDATK 75 (109)
T ss_dssp TSCSCCHHHHHTCCT---TCCHHHHHHHHHHHHHHSCTTTSTT--------------CHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHHcCHHH
Confidence 445689999999999 9999999999999999999999984 23467899999999999999999
Q ss_pred hhhhcccCC
Q 006407 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|..||.++.
T Consensus 76 R~~YD~~g~ 84 (109)
T 2ctw_A 76 RNIYDKYGS 84 (109)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHHhcc
Confidence 999999764
No 20
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-17 Score=148.36 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=64.4
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
....|||+||||++ .|+.++||+|||+++++||||++++ ...+.+.|+.|++||+||+||.+|
T Consensus 17 ~~~~d~Y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~R 79 (112)
T 2ctq_A 17 EDTEDYYTLLGCDE---LSSVEQILAEFKVRALECHPDKHPE--------------NPKAVETFQKLQKAKEILTNEESR 79 (112)
T ss_dssp CCCCCHHHHTTCCT---TSCHHHHHHHHHHHHHTTCTTTCTT--------------CSTHHHHHHHHHHHHHHHHSHHHH
T ss_pred cCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHHCCHHHH
Confidence 45689999999999 9999999999999999999999984 224678999999999999999999
Q ss_pred hhhcccCC
Q 006407 171 RIYDSTDE 178 (646)
Q Consensus 171 ~~YDs~~~ 178 (646)
..||.++.
T Consensus 80 ~~YD~~~~ 87 (112)
T 2ctq_A 80 ARYDHWRR 87 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99999764
No 21
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.65 E-value=2.5e-17 Score=147.60 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=71.7
Q ss_pred CccccccccccccccCCCC-CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 91 SNQQDHYALLGLSHLRYLA-TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~A-t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
....|||+||||++ .| |..+||+|||+++++||||++++. .....+.+.|+.|++||+||+||.+
T Consensus 12 ~~~~~~y~iLgv~~---~a~s~~eIk~aYr~l~~~~HPDk~~~~-----------~~~~~a~~~f~~i~~AY~~L~d~~~ 77 (109)
T 2qsa_A 12 CGLENCYDVLEVNR---EEFDKQKLAKAYRALARKHHPDRVKNK-----------EEKLLAEERFRVIATAYETLKDDEA 77 (109)
T ss_dssp TTTSCHHHHTTCCG---GGCCHHHHHHHHHHHHHHTCGGGCCSH-----------HHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred cCCCCHHHHcCCCC---CCCCHHHHHHHHHHHHHHHCcCCCCCc-----------cccHHHHHHHHHHHHHHHHHCCHHH
Confidence 45689999999999 89 999999999999999999998741 0134578899999999999999999
Q ss_pred hhhhcccCCCCCCCCCCCCCCchHHhhhhhh
Q 006407 170 RRIYDSTDEFDDAIPADCAPQDFYKVFGPAF 200 (646)
Q Consensus 170 R~~YDs~~~~~~~~p~~~~~~~Ff~~f~~~F 200 (646)
|..||..+...+. .-.+||..|..+|
T Consensus 78 R~~YD~~~~~~~~-----~~~~~~~~~~~~~ 103 (109)
T 2qsa_A 78 KTNYDYYLDHPDQ-----RFYNYYQYYRLRA 103 (109)
T ss_dssp HHHHHHHHHCTTC-----HHHHHHHHHHHC-
T ss_pred HHHHHHhccCchH-----HHHHHHHHHHHHh
Confidence 9999997642211 1234555665555
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=6.7e-17 Score=133.64 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhc
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK~ 644 (646)
...+||.+|+++|++||+.||.++++||++||++|||||+.||+.||++|.+.+.+.|.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~~~ 65 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQKH 65 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccccc
Confidence 34579999999999999999999999999999999999999999999999888887664
No 23
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8.1e-17 Score=140.01 Aligned_cols=68 Identities=46% Similarity=0.762 Sum_probs=61.8
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
++..|||+||||++ .+|.++||++||+|+++||||++++. .+.|+.|++||+||+||.+|
T Consensus 5 ~~~~~~y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~-----------------~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 5 VKETKLYDLLGVSP---SANEQELKKGYRKAALKYHPDKPTGD-----------------TEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp CSCCHHHHHHTCCT---TCCHHHHHHHHHHHHHHHCTTSTTCC-----------------HHHHHHHHHHHHHHTSHHHH
T ss_pred ccCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCh-----------------HHHHHHHHHHHHHHCCHHHH
Confidence 45689999999999 89999999999999999999999741 35899999999999999999
Q ss_pred hhhcccCC
Q 006407 171 RIYDSTDE 178 (646)
Q Consensus 171 ~~YDs~~~ 178 (646)
..||.++.
T Consensus 65 ~~YD~~~~ 72 (92)
T 2o37_A 65 EIYDQYGL 72 (92)
T ss_dssp HHHHHHCH
T ss_pred HHHHHHCH
Confidence 99998753
No 24
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-17 Score=141.67 Aligned_cols=69 Identities=45% Similarity=0.703 Sum_probs=62.6
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006407 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ .+|.++||+|||+++++||||+++.. .+.+.+.|+.|++||+||+||.+|..|
T Consensus 2 ~d~Y~iLgv~~---~as~~eIk~aYr~la~~~HPDk~~~~-------------~~~a~~~f~~I~~AY~vL~d~~~R~~Y 65 (99)
T 2lgw_A 2 ASYYEILDVPR---SASADDIKKAYRRKALQWHPDKNPDN-------------KEFAEKKFKEVAEAYEVLSDKHKREIY 65 (99)
T ss_dssp CCHHHHSSSCT---TSCHHHHHHHHHHHHHHTSTTTCCSC-------------CHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCcc-------------HHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 58999999999 99999999999999999999998742 345688999999999999999999999
Q ss_pred cccCC
Q 006407 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|..+.
T Consensus 66 D~~g~ 70 (99)
T 2lgw_A 66 DRYGR 70 (99)
T ss_dssp HHHHH
T ss_pred HHhCc
Confidence 99753
No 25
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.60 E-value=2.9e-16 Score=141.86 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=60.5
Q ss_pred ccccccccccccccCCCCCH--HHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 92 NQQDHYALLGLSHLRYLATE--DQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~--~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
...|||+||||++ .++. .+||+|||+|+++||||++++ .+.|+.|++||+||+||.+
T Consensus 6 ~~~~~Y~iLgv~~---~as~~~~eIk~aYr~la~~~HPDk~~~------------------~e~f~~I~~AYevL~d~~~ 64 (114)
T 1gh6_A 6 ESLQLMDLLGLER---SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------EEKMKKMNTLYKKMEDGVK 64 (114)
T ss_dssp HHHHHHHHTTCCT---TSCSCHHHHHHHHHHTTTTCCTTTCCT------------------TTTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHcCCCC---CCCcCHHHHHHHHHHHHHHHCCCCCcc------------------HHHHHHHHHHHHHHCCHHH
Confidence 3578999999999 8998 999999999999999999873 3589999999999999999
Q ss_pred hhhhcccCCC
Q 006407 170 RRIYDSTDEF 179 (646)
Q Consensus 170 R~~YDs~~~~ 179 (646)
|+.||.++..
T Consensus 65 R~~~~~~~~~ 74 (114)
T 1gh6_A 65 YAHQPDFGGF 74 (114)
T ss_dssp SCCSSCCSCC
T ss_pred HHHhhhcccc
Confidence 9999987653
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.60 E-value=4.8e-16 Score=153.22 Aligned_cols=69 Identities=39% Similarity=0.634 Sum_probs=62.8
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006407 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+++++||||++++ ...+.+.|+.|++||+||+||.+|..|
T Consensus 2 ~~~y~~l~~~~---~a~~~~ik~ay~~l~~~~HPD~~~~--------------~~~~~~~f~~i~~Ay~~L~~~~~r~~y 64 (210)
T 3apq_A 2 QNFYSLLGVSK---TASSREIRQAFKKLALKLHPDKNPN--------------NPNAHGDFLKINRAYEVLKDEDLRKKY 64 (210)
T ss_dssp CCHHHHHTCCT---TCCHHHHHHHHHHHHHHHCGGGCTT--------------CTTHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------ChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58999999999 9999999999999999999999974 234678999999999999999999999
Q ss_pred cccCCC
Q 006407 174 DSTDEF 179 (646)
Q Consensus 174 Ds~~~~ 179 (646)
|.++..
T Consensus 65 d~~~~~ 70 (210)
T 3apq_A 65 DKYGEK 70 (210)
T ss_dssp HHHTTT
T ss_pred HHhccc
Confidence 998753
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.59 E-value=5.8e-16 Score=128.73 Aligned_cols=58 Identities=28% Similarity=0.601 Sum_probs=53.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhh
Q 006407 584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~ 641 (646)
.+...+||.+|+++|+.||++||.++++||.+||.+|||||.+||++||..|+++|-+
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~~ 72 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSGPSS 72 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSCCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHcccC
Confidence 4455689999999999999999998899999999999999999999999999998754
No 28
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.59 E-value=2.4e-15 Score=130.67 Aligned_cols=58 Identities=36% Similarity=0.610 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhhc
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKS 644 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK~ 644 (646)
..+||.+||++|++||+.||.++++||.+||.+|||||++||++||..|+++|+..++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ies 65 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999999999999999999999999999999999999987664
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.57 E-value=3.3e-16 Score=151.02 Aligned_cols=90 Identities=24% Similarity=0.326 Sum_probs=68.7
Q ss_pred ccccccccccccccCCCCC--HHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 92 NQQDHYALLGLSHLRYLAT--EDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At--~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
...|||+||||++ +|+ .++||+|||+++++||||++++ .+.|+.|++||+||+||.+
T Consensus 9 ~~~d~Y~vLGl~~---~as~~~~eIKkAYRkLa~~~HPDk~~~------------------~e~F~~I~~AYevLsdp~k 67 (174)
T 2pf4_E 9 ESLQLMDLLGLER---SAWGNIPLMRKAYLKKCKEFHPDKGGD------------------EEKMKKMNTLYKKMEDGVK 67 (174)
T ss_dssp HHHHHHHTTTCCG---GGTTCHHHHHHHHHHHGGGCSCC---C------------------CTTTTHHHHHHHHHHHHHH
T ss_pred ccccHHHHcCCCC---CCCcCHHHHHHHHHHHHHHHCcCCCCC------------------HHHHHHHHHHHHHhCCHHH
Confidence 4479999999999 888 6999999999999999999873 3579999999999999999
Q ss_pred hhhhcccCCC-C-CCCCC----CCCCCchHHhhhhhhcc
Q 006407 170 RRIYDSTDEF-D-DAIPA----DCAPQDFYKVFGPAFTR 202 (646)
Q Consensus 170 R~~YDs~~~~-~-~~~p~----~~~~~~Ff~~f~~~F~~ 202 (646)
|+.||.+|.+ + +.++. ......|+..|++.|..
T Consensus 68 R~~YD~~G~~w~~~~~~~~~~f~~~~~~f~~~w~~c~~~ 106 (174)
T 2pf4_E 68 YAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPECVKK 106 (174)
T ss_dssp HHTSCGGGGCC------CCSSCCCTTCCSCSSHHHHHSS
T ss_pred HHHHhccCCcccccccchhhhccchHHHHHHhhhHHhcc
Confidence 9999998852 2 12222 12345677777777754
No 30
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.5e-16 Score=133.10 Aligned_cols=62 Identities=35% Similarity=0.531 Sum_probs=56.1
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006407 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ .+|.++||+|||+|+++||||+++. ..+.+.|+.|++||+||+||.+|+.
T Consensus 26 ~~~~y~iLgv~~---~as~~eIk~aYr~la~~~HPDk~~~---------------~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKP---GASRDEVNKAYRKLAVLLHPDKCVA---------------PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCT---TCCHHHHHHHHHHHHHHHCTTTCCC---------------TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHHCCcccccC
Confidence 479999999999 9999999999999999999999974 2246789999999999999999875
No 31
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.56 E-value=2.8e-16 Score=166.52 Aligned_cols=70 Identities=37% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.+...|||+||||++ +||.++||+|||+|+++||||++++ ..+.+.|+.|++||+||+||.+
T Consensus 24 ~m~~~d~Y~vLgv~~---~as~~eIk~aYr~la~~~HPDk~~~---------------~~a~~~f~~i~~Ay~vL~d~~~ 85 (329)
T 3lz8_A 24 AMELKDYYAILGVQP---TDDLKTIKTAYRRLARKYHPDVSKE---------------NDAEAKFKDLAEAWEVLKDEQR 85 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------hHHHHHHHHHHHHHHHhhhhhh
Confidence 345589999999999 9999999999999999999999874 2467899999999999999999
Q ss_pred hhhhcccC
Q 006407 170 RRIYDSTD 177 (646)
Q Consensus 170 R~~YDs~~ 177 (646)
|..||.++
T Consensus 86 R~~YD~~~ 93 (329)
T 3lz8_A 86 RAEYDQLW 93 (329)
T ss_dssp --------
T ss_pred hcccchhh
Confidence 99999873
No 32
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=142.00 Aligned_cols=77 Identities=27% Similarity=0.478 Sum_probs=65.6
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....|||+||||++ .++.++||+|||++++++|||++++.... .....+.+.|+.|++||+||+||.+
T Consensus 6 ~~~~~~~y~iLgv~~---~a~~~eIk~aYr~l~~~~HPDk~~~~~~~--------~~~~~a~~~f~~i~~Ay~~L~dp~~ 74 (155)
T 2l6l_A 6 QMPKKDWYSILGADP---SANISDLKQKYQKLILMYHPDKQSTDVPA--------GTVEECVQKFIEIDQAWKILGNEET 74 (155)
T ss_dssp CCCCSHHHHHHTCCT---TCCHHHHHHHHHHHHHHHSCCCCCCCCTT--------HHHHHHHHHHHHHHHHHHHSSSHHH
T ss_pred cCCCCChhHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCCCch--------hHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455689999999999 99999999999999999999999863211 1134578899999999999999999
Q ss_pred hhhhcccC
Q 006407 170 RRIYDSTD 177 (646)
Q Consensus 170 R~~YDs~~ 177 (646)
|..||..+
T Consensus 75 R~~Yd~~~ 82 (155)
T 2l6l_A 75 KREYDLQR 82 (155)
T ss_dssp HCHHHHHH
T ss_pred HHHHHHHc
Confidence 99999753
No 33
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.53 E-value=3.6e-15 Score=144.40 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=61.8
Q ss_pred cccccccccccccCCCCC--HHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 93 QQDHYALLGLSHLRYLAT--EDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At--~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
..|||+||||++ .++ ..+|+++||+++++||||++++.... ....+...|..|++||+||+||.+|
T Consensus 3 ~~d~Y~iLgl~~---~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~---------e~~~a~~~f~~In~AY~vL~dp~~R 70 (174)
T 3hho_A 3 AMNYFELFGLPI---QFELDGSLLSSQFRALQKRFHPDNFATASER---------DRLMAVQQAAQINDAYQTLKDPLRR 70 (174)
T ss_dssp -CCHHHHTTCCS---SSCCCHHHHHHHHHHHHHHHCGGGSTTSCHH---------HHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCCHHHHcCcCC---CCCCCHHHHHHHHHHHHHHHCcCCCCCCcHH---------HHHHHHHHHHHHHHHHHHHcChHHH
Confidence 579999999998 776 99999999999999999999863211 1344788999999999999999999
Q ss_pred hhhccc
Q 006407 171 RIYDST 176 (646)
Q Consensus 171 ~~YDs~ 176 (646)
..||..
T Consensus 71 ~~Yd~~ 76 (174)
T 3hho_A 71 AEYLLS 76 (174)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999975
No 34
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.53 E-value=4.1e-15 Score=143.60 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=62.3
Q ss_pred ccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006407 94 QDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
+|||+||||++ .+ |..+||++||+++++||||++++.+. .....+...|..|++||+||+||.+|.
T Consensus 1 ~d~y~lLgl~~---~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~---------~e~~~a~~~f~~In~AY~vL~dp~~R~ 68 (171)
T 1fpo_A 1 MDYFTLFGLPA---RYQLDTQALSLRFQDLQRQYHPDKFASGSQ---------AEQLAAVQQSATINQAWQTLRHPLMRA 68 (171)
T ss_dssp CHHHHHTTCCS---SSCCCHHHHHHHHHHHHHHTCGGGGTTSCH---------HHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHCCCCC---CCCCCHHHHHHHHHHHHHHhCcCCCCCCCH---------HHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 48999999998 77 99999999999999999999986321 113456789999999999999999999
Q ss_pred hhcccC
Q 006407 172 IYDSTD 177 (646)
Q Consensus 172 ~YDs~~ 177 (646)
.||...
T Consensus 69 ~Yd~~l 74 (171)
T 1fpo_A 69 EYLLSL 74 (171)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999863
No 35
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.53 E-value=1.1e-14 Score=120.70 Aligned_cols=54 Identities=26% Similarity=0.565 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
...+||.+|+++|++||+.||.++++||++||++| |||.+||++||+.|+++|.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~ 60 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence 34579999999999999999999999999999997 9999999999999999863
No 36
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.51 E-value=5.3e-15 Score=125.05 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=55.4
Q ss_pred cccccccccccccCCC--CCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 93 QQDHYALLGLSHLRYL--ATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~--At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
..++|+||||++ . +|..+||+|||+|+++||||++++ .+.|+.|++||++|+|+.+|
T Consensus 10 ~~~~y~iLgl~~---~~~a~~~eIk~aYr~la~~~HPDk~~~------------------~~~f~~i~~AYe~L~~~~~r 68 (79)
T 1faf_A 10 KERLLELLKLPR---QLWGDFGRMQQAYKQQSLLLHPDKGGS------------------HALMQELNSLWGTFKTEVYN 68 (79)
T ss_dssp HHHHHHHHTCCS---SSTTCHHHHHHHHHHHHHHSSGGGSCC------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHHCcCCCCC------------------HHHHHHHHHHHHHHhhHHHH
Confidence 368999999998 7 999999999999999999999763 46899999999999999999
Q ss_pred hhhc
Q 006407 171 RIYD 174 (646)
Q Consensus 171 ~~YD 174 (646)
..++
T Consensus 69 ~~~~ 72 (79)
T 1faf_A 69 LRMN 72 (79)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8854
No 37
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.50 E-value=1.6e-15 Score=124.11 Aligned_cols=47 Identities=32% Similarity=0.511 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA 633 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk 633 (646)
..+||.+|+++||+||++||+++++||++||++|||||+.||+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999995
No 38
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=144.29 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=63.1
Q ss_pred ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006407 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
...|||+||||++ .++++..+||++||+|+++||||++++.+. .....+.+.|+.|++||+||+||.+|.
T Consensus 41 ~~~d~y~lLgv~~-~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~---------~e~~~a~~~f~~In~AY~vLsdp~~R~ 110 (207)
T 3bvo_A 41 PTRDYFSLMDCNR-SFRVDTAKLQHRYQQLQRLVHPDFFSQRSQ---------TEKDFSEKHSTLVNDAYKTLLAPLSRG 110 (207)
T ss_dssp TTCCHHHHTTSCS-CSCCCHHHHHHHHHHHHHHHCGGGGTTSCH---------HHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCH---------HHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3579999999997 345899999999999999999999985321 113456789999999999999999999
Q ss_pred hhccc
Q 006407 172 IYDST 176 (646)
Q Consensus 172 ~YDs~ 176 (646)
.||..
T Consensus 111 ~Yd~~ 115 (207)
T 3bvo_A 111 LYLLK 115 (207)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99964
No 39
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.50 E-value=5.9e-15 Score=127.32 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=58.2
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....++|+||||+. +||.++||+|||+|+++||||++++. .+.+.+.|+.|++||+||+|...
T Consensus 12 ~~~~~~~y~vLgv~~---~as~~eIKkaYrkla~~~HPDk~~~~-------------~~~a~~~F~~I~~AYevL~~~~~ 75 (88)
T 1iur_A 12 GSILKEVTSVVEQAW---KLPESERKKIIRRLYLKWHPDKNPEN-------------HDIANEVFKHLQNEINRLEKQAF 75 (88)
T ss_dssp SSCHHHHHHHHHHTT---SSCSHHHHHHHHHHHHHTCTTTSSSC-------------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHhCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCc-------------hHHHHHHHHHHHHHHHHHHhhcc
Confidence 556689999999999 99999999999999999999998852 24568899999999999999877
Q ss_pred hh
Q 006407 170 RR 171 (646)
Q Consensus 170 R~ 171 (646)
|.
T Consensus 76 r~ 77 (88)
T 1iur_A 76 LD 77 (88)
T ss_dssp CS
T ss_pred cc
Confidence 73
No 40
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.50 E-value=1.2e-14 Score=129.54 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=55.8
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~ 168 (646)
.|...|||.|||++. ||.++||+|||+++++|||||+++.+.+. .....+.+.|+.|++||+||+|+.
T Consensus 37 l~~~~d~Y~vl~~~~----As~~eIKkAYRklal~~HPDK~~~~~~~~-------e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 37 LWSGSGWKPVPLMDM----IEGNAVRKSYQRALLILHPDKLQQKGASA-------NQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCTTSCCCCCCGGGS----CSHHHHHHHHHHHHHHHCHHHHHHTTCCH-------HHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hcccCCHHHHcCCCC----CCHHHHHHHHHHHHHHHCcCcCCCcccch-------hhHHHHHHHHHHHHHHHHHHcCcc
Confidence 566789999999974 99999999999999999999998532110 113357889999999999999985
No 41
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.49 E-value=1.1e-14 Score=141.24 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=61.2
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.|...|||+||||+. .||..+||+|||+++++|||||+++.. ....+.+.|+.|++||+||+||.+
T Consensus 113 l~~~~d~Y~vLgv~~---~As~~eIKkAYRklal~~HPDK~~~~~-----------~e~~A~~~F~~I~eAYevLsD~~k 178 (182)
T 1n4c_A 113 LWAGETKWKPVGMAD---LVTPEQVKKVYRKAVLVVHPDKATGQP-----------YEQYAKMIFMELNDAWSEFENQGQ 178 (182)
T ss_dssp SCTTCCCCCCCCGGG---GSSHHHHHHHHHHHHHHTCGGGGSSCT-----------THHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcCccchhhcCCCCC---CCCHHHHHHHHHHHHHHHCcCcCCCcc-----------hHHHHHHHHHHHHHHHHHHCCHHh
Confidence 455579999999999 999999999999999999999998521 112478899999999999999999
Q ss_pred hhhh
Q 006407 170 RRIY 173 (646)
Q Consensus 170 R~~Y 173 (646)
|..|
T Consensus 179 R~~Y 182 (182)
T 1n4c_A 179 KPLY 182 (182)
T ss_dssp SCCC
T ss_pred hhhC
Confidence 9987
No 42
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.46 E-value=2.7e-14 Score=123.93 Aligned_cols=59 Identities=22% Similarity=0.420 Sum_probs=51.5
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 006407 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID 166 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsD 166 (646)
.++|.+|||+. .||..+||+|||+++++|||||+++.. ....+...|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~---~as~~eIKkAYRklal~~HPDK~~~~~-----------~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMAD---LVTPEQVKKVYRKAVLVVHPCKATGQP-----------YEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGG---SSSHHHHHHHHHHHHHHTCHHHHTTST-----------THHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCch-----------hHhHHHHHHHHHHHHHHHHHh
Confidence 57999999999 999999999999999999999998521 123468899999999999975
No 43
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.2e-13 Score=114.27 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=52.2
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006407 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
....++|+||||++. .+|.++||++||+|+++||||++++ .+.|+.|++||++|+|+..|
T Consensus 11 m~~~~~y~iLgl~~~--~a~~~eIk~ayr~l~~~~HPDk~g~------------------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTEN--TLTKKKLKEVHRKIMLANHPDKGGS------------------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTT--TCCHHHHHHHHHHHHHHHCGGGTCC------------------HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC------------------HHHHHHHHHHHHHHhhhhhc
Confidence 344699999999861 4999999999999999999999642 35899999999999998776
Q ss_pred h
Q 006407 171 R 171 (646)
Q Consensus 171 ~ 171 (646)
+
T Consensus 71 k 71 (71)
T 2guz_A 71 K 71 (71)
T ss_dssp C
T ss_pred C
Confidence 3
No 44
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.38 E-value=9e-14 Score=135.34 Aligned_cols=67 Identities=25% Similarity=0.441 Sum_probs=59.2
Q ss_pred Ccccccccccc------ccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHh
Q 006407 91 SNQQDHYALLG------LSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL 164 (646)
Q Consensus 91 ~k~~d~Y~vLG------l~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiL 164 (646)
....|||+||| ++. +++|..+||++||+++++||||++++ +.+.|..|++||+||
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~--~~a~~~eIk~aYr~la~~~HPDk~~~-----------------a~~~f~~i~~AY~vL 68 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPI--WTIDQSRLRKEYRQLQAQHHPDMAQQ-----------------GSEQSSTLNQAYHTL 68 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCC--SCCCHHHHHHHHHHHHHTCCTTSCCS-----------------CSSGGGSHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCC--CCCCHHHHHHHHHHHHHHhCcCCCcc-----------------HHHHHHHHHHHHHHH
Confidence 45679999994 554 68999999999999999999999973 246799999999999
Q ss_pred cchhhhhhhccc
Q 006407 165 IDPVKRRIYDST 176 (646)
Q Consensus 165 sDp~kR~~YDs~ 176 (646)
+||.+|..||..
T Consensus 69 ~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 69 KDPLRRSQYMLK 80 (181)
T ss_dssp HSHHHHHHHHHH
T ss_pred cChHHHHHHHHH
Confidence 999999999985
No 45
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.32 E-value=1.5e-13 Score=160.41 Aligned_cols=72 Identities=39% Similarity=0.662 Sum_probs=40.6
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006407 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....|||+||||++ +||.++||+|||+++++||||++++ ...+.+.|+.|++||++|+||.+
T Consensus 17 ~~~~~~~y~~lg~~~---~a~~~~i~~ay~~l~~~~hpd~~~~--------------~~~~~~~f~~i~~ay~~L~~~~~ 79 (780)
T 3apo_A 17 GRHDQNFYSLLGVSK---TASSREIRQAFKKLALKLHPDKNPN--------------NPNAHGDFLKINRAYEVLKDEDL 79 (780)
T ss_dssp ------CHHHHTCCT---TCCHHHHHHHHCC-------------------------------------CTHHHHHHSHHH
T ss_pred CCCCCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------ChHHHHHHHHHHHHHHHHcChHH
Confidence 455689999999999 9999999999999999999999974 23467899999999999999999
Q ss_pred hhhhcccCC
Q 006407 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|+.||.++.
T Consensus 80 r~~yd~~~~ 88 (780)
T 3apo_A 80 RKKYDKYGE 88 (780)
T ss_dssp HHHHTTC--
T ss_pred HHHHHhhcc
Confidence 999999875
No 46
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=108.31 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=52.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCC--ChhHHHHHhhCCCCCHHHHHHHH-HHHHHHHhhh
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKET--SQRWERVATAVPGKTVIQCKKKF-ASLKENFRSK 642 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~--~~rW~~IA~~Vpgrt~~~c~~Ry-k~l~~~vk~k 642 (646)
.|.....+||.+||.+|+++|..||.++ +.+|..||.+|||||..||++|| ++|..+++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3445556899999999999999999754 38999999999999999999999 8888877654
No 47
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.29 E-value=4.5e-12 Score=105.05 Aligned_cols=50 Identities=34% Similarity=0.709 Sum_probs=46.6
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
...+||.+|+++|++||++||.||++||++||.+| |||++||+.+|+.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999 599999999999863
No 48
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.28 E-value=3.8e-12 Score=116.99 Aligned_cols=46 Identities=15% Similarity=0.616 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
..+||++||.+|..++..||. .+|..||..|||||..||+.||..+
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 357999999999999999984 4799999999999999999999753
No 49
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.23 E-value=1.1e-11 Score=102.60 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=47.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
...+||.+|+.+|.+||..||.+|++||+.||.+|| |||+.||+.+|+.+
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMEN 56 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 346899999999999999999999999999999999 59999999999985
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.18 E-value=2.9e-11 Score=100.39 Aligned_cols=51 Identities=29% Similarity=0.698 Sum_probs=47.7
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
...+||.+|+.+|+.||+.||.++++||..||.+|| |||++||+.||+.++
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLV 67 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999998 699999999999863
No 51
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=6.5e-11 Score=94.68 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=44.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 583 SSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 583 ~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
+.....+||++||.+|..++..|+. .+|..||..|||||..||++||..+
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMCTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455678999999999999999984 4799999999999999999999653
No 52
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.13 E-value=7.8e-12 Score=102.41 Aligned_cols=48 Identities=27% Similarity=0.531 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATK 506 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k 506 (646)
...+||.+|+.+|++||.+||.||++||++||.+|| |||+.||+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 356899999999999999999999999999999999 699999998874
No 53
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.11 E-value=8.8e-11 Score=101.95 Aligned_cols=51 Identities=27% Similarity=0.604 Sum_probs=47.2
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..++||.+|+.+|+.||.+||.|+++||..||.+|| |||++||+.||+.++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999998 699999999999864
No 54
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.7e-11 Score=97.10 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
+.++||.+|+.+|.++|..|+. .+|..||.+|+ +||.+||+.||.++|
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH-RKSAKQCKARWYEWL 55 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST-TCCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc-CCCHHHHHHHHHHHc
Confidence 5679999999999999999943 37999999998 799999999999875
No 55
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=2.5e-10 Score=91.11 Aligned_cols=51 Identities=25% Similarity=0.544 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
+|.....+||++||.+|..++..|+. .+|..||..|||||..||++||..+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHccCCCHHHHHHHHHHH
Confidence 34556679999999999999999973 4799999999999999999999754
No 56
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.3e-10 Score=92.23 Aligned_cols=57 Identities=26% Similarity=0.570 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK 643 (646)
.|.....+||.+||.+|..+++.|| .+|..||. +||||.+||++||..+......+.
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g----~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMP----TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCT----TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC----CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 3455667899999999999999997 38999999 899999999999998887776554
No 57
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=4.6e-10 Score=92.96 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
+|.....+||.+|+.+|..++..||. +|..||..|||||..||++||..+.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 44556779999999999999999974 8999999999999999999997554
No 58
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.01 E-value=3.9e-10 Score=87.36 Aligned_cols=47 Identities=17% Similarity=0.531 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
..+||++||.+|..++..||. .+|..||..|||||..||++||..+.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 358999999999999999974 37999999999999999999997654
No 59
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.01 E-value=2.1e-10 Score=96.74 Aligned_cols=46 Identities=24% Similarity=0.531 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
...+||++|+.+|+.||.+|| .+|..||..|||||..||+.||..|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346899999999999999998 5899999999999999999999866
No 60
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.99 E-value=8.6e-10 Score=87.56 Aligned_cols=46 Identities=24% Similarity=0.505 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKFASL 635 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ryk~l 635 (646)
..+||++||.+|..++..|+. .+|..||..|| |||..||+.||..+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 457999999999999999974 47999999999 99999999999753
No 61
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.95 E-value=8.4e-10 Score=85.51 Aligned_cols=46 Identities=17% Similarity=0.615 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
..+||++||.+|..++..||. .+|..||..|||||..||++||...
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 358999999999999999973 3699999999999999999999753
No 62
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=90.41 Aligned_cols=51 Identities=27% Similarity=0.596 Sum_probs=45.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCC--CcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGT--SRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt--~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..++||.||+.+|.++|..|+.++ +.+|..||.+|+ +||..||+.||..+|
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYF 59 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 567999999999999999998765 379999999998 699999999998775
No 63
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.90 E-value=2e-09 Score=83.81 Aligned_cols=46 Identities=15% Similarity=0.474 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK 636 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~ 636 (646)
.+||++||.+|..++..||. ..|..||..+| |||..||++||..|.
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 47999999999999999974 47999999999 999999999998764
No 64
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.90 E-value=2.3e-09 Score=85.06 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLL 510 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~ 510 (646)
..++||.+|+.+|..+|.+|+. .+|..||.+||++||..||+.||.++++
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGL---GNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 3568999999999999999943 3799999999866999999999998753
No 65
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.8e-09 Score=87.66 Aligned_cols=51 Identities=25% Similarity=0.552 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
++.....+||++||.+|..++..|+. .+|..||..|||||.+||+.||...
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 44556679999999999999999983 4799999999999999999999753
No 66
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.85 E-value=5.1e-09 Score=83.61 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLL 510 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~ 510 (646)
...+||.+|+.+|.++|..|+. .+|..||.+|+ +||..||+.||.++|+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMC-TKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT-TSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhC-CCCHHHHHHHHHHHcc
Confidence 4578999999999999999943 37999999998 6999999999999874
No 67
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.85 E-value=3.9e-09 Score=85.45 Aligned_cols=48 Identities=13% Similarity=0.493 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK 636 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~ 636 (646)
...+||++||.+|..++..|+.+ .|..||..+| |||..||++||.-|.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999843 6999999987 999999999998765
No 68
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=6.6e-09 Score=83.30 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS 634 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~ 634 (646)
...+||++|+++|+.||..||+ +|.+||..|||||..||+.+|-.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHHH
Confidence 3468999999999999999984 69999999999999999999853
No 69
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.84 E-value=3.5e-09 Score=81.92 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
.++||.+|+.+|..+|..|+. .+|..||.+|+ |||..||..||.++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP-NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTST-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 478999999999999999943 37999999998 699999999999876
No 70
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.83 E-value=2.4e-09 Score=88.80 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=46.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKEN 638 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~ 638 (646)
.|.....+||++||.+|..+++.|| .+|..||..+ |||.++|++||..|...
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G----~kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHG----NDWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHS----SCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 5677778999999999999999997 4699999999 99999999999987643
No 71
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.81 E-value=4.1e-09 Score=81.56 Aligned_cols=47 Identities=36% Similarity=0.568 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
.++||.+|+.+|..+|..|+. .+|..||.+|+ |||..||+.||.++|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLK-GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTST-TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 478999999999999999943 36999999998 699999999999875
No 72
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.28 E-value=5.8e-10 Score=96.21 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
++.....+||.+|+.+|..++..|| .+|..||..|||||..||++||..+
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G----~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHG----RNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4556677999999999999999996 4799999999999999999999654
No 73
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.78 E-value=2.2e-08 Score=99.72 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=43.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCC--CCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKG--TSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~g--t~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
...+||.||+.+|..++.+||.. +..-|..||.+|+ |||.-+|..||..+|
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L 59 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYL 59 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35689999999999999999653 2223999999998 799999999999976
No 74
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.78 E-value=9.1e-09 Score=81.99 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..++||.||+.+|..+|..|+. .+|..||.+|+ +||..||+.||.++|
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFP-NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCS-SSCHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcc-CCCHHHHHHHHHHHc
Confidence 5679999999999999999942 36999999998 699999999999875
No 75
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.77 E-value=1.2e-08 Score=83.64 Aligned_cols=50 Identities=14% Similarity=0.456 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC--CCCHHHHHHHHHHHH
Q 006407 584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVP--GKTVIQCKKKFASLK 636 (646)
Q Consensus 584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp--grt~~~c~~Ryk~l~ 636 (646)
.....+||++|+.+|..++..|+. ..|..||..+| |||..||++||..+.
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 345578999999999999999974 47999999999 999999999997664
No 76
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.69 E-value=2.2e-08 Score=77.88 Aligned_cols=48 Identities=25% Similarity=0.348 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-CCCHHHHHHHHHHHh
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-GRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-~Rt~ke~~~~~k~~l 509 (646)
.++||+||+.+|..+|+.|+. .+|..||.+|+. |||..||..||.+++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999943 379999999973 499999999999875
No 77
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.69 E-value=2.2e-08 Score=84.37 Aligned_cols=46 Identities=24% Similarity=0.539 Sum_probs=42.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
...+||.+|+.+|..+|++|+ .+|..||.+|| +||..||+.||..+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 467999999999999999995 58999999999 59999999999875
No 78
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.68 E-value=2.4e-08 Score=80.82 Aligned_cols=49 Identities=33% Similarity=0.571 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc-CCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG-TGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~-~~Rt~ke~~~~~k~~l 509 (646)
+.++||+||+.+|..+|++|+.| .|..||.+++ .+||..||..||.+++
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999443 6999999975 3699999999999864
No 79
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.68 E-value=1.1e-08 Score=108.38 Aligned_cols=69 Identities=36% Similarity=0.613 Sum_probs=56.2
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006407 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..++|.+||+.. .++..+|+++|+++++++|||+.+.. .....+...|+.|.+||++|+||.+|..
T Consensus 381 ~~~~y~~lg~~~---~~~~~~~~~~y~~~~l~~~pd~~~~~-----------~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 381 KRDYYKILGVKR---NAKKQEIIKAYRKLALQWHPDNFQNE-----------EEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp SCCSGGGSCSST---TCCTTHHHHHHHHHHHHSCGGGCCSH-----------HHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred chhHHHHhCCCc---cCCHHHHHHHHHHHHHHhCCCCCCCc-----------hHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 358999999998 88999999999999999999998742 0134578899999999999999999999
Q ss_pred hcc
Q 006407 173 YDS 175 (646)
Q Consensus 173 YDs 175 (646)
||.
T Consensus 447 yd~ 449 (450)
T 2y4t_A 447 FDD 449 (450)
T ss_dssp ---
T ss_pred ccC
Confidence 997
No 80
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.65 E-value=4.3e-08 Score=81.08 Aligned_cols=48 Identities=33% Similarity=0.666 Sum_probs=43.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
-..++||.||+.+|.++|..| |. +|..||.+|+ |||..||..+|..++
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~--G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKF--GR--RWTKISKLIG-SRTVLQVKSYARQYF 54 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHT--CS--CHHHHHHHHS-SSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH--Cc--CHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 356899999999999999999 54 7999999998 699999999999875
No 81
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.59 E-value=6.6e-08 Score=79.24 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=43.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-CCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-GRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-~Rt~ke~~~~~k~~l 509 (646)
..++||.+|+.+|..+|..| |+ .+|..||.+|+. |||..||..||.++|
T Consensus 9 ~r~~WT~eED~~L~~~v~~~--G~-~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKY--GE-GNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHH--CS-SCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH--CC-CcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 56899999999999999999 43 379999999974 699999999999986
No 82
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=9.7e-08 Score=77.52 Aligned_cols=46 Identities=33% Similarity=0.490 Sum_probs=40.9
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..++||.||+.+|..++..| |. +|..||. +. |||..||+.||..+|
T Consensus 8 ~k~~WT~eED~~L~~~~~~~--g~--~W~~Ia~-~~-gRt~~qcr~Rw~~~l 53 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLM--PT--QWRTIAP-II-GRTAAQCLEHYEFLL 53 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHC--TT--CHHHHHH-HH-SSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC--CHHHHhc-cc-CcCHHHHHHHHHHHh
Confidence 56789999999999999999 43 7999999 54 599999999999876
No 83
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.54 E-value=7.6e-08 Score=85.06 Aligned_cols=45 Identities=16% Similarity=0.626 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS 634 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~ 634 (646)
..+||++||.+|..++..||. .+|..||..|||||..||+.||..
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHLKGRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhhcCCCHHHHHHHHHh
Confidence 358999999999999999984 479999999999999999999975
No 84
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.50 E-value=1.1e-07 Score=84.57 Aligned_cols=44 Identities=14% Similarity=0.390 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS 634 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~ 634 (646)
..||++||.+|..++..||. .+|..||..|||||..||+.||..
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcCCCCHHHHHHHHHH
Confidence 36999999999999999984 479999999999999999999975
No 85
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.44 E-value=2.3e-07 Score=78.76 Aligned_cols=46 Identities=26% Similarity=0.454 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhHHHHHhh----CCCCCHHHHHHHHHHHHH
Q 006407 589 AWSAVQERALVQALKTFPKETSQRWERVATA----VPGKTVIQCKKKFASLKE 637 (646)
Q Consensus 589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~----Vpgrt~~~c~~Ryk~l~~ 637 (646)
+||.+|+.+|..++.+||.+ +|..|+.. +||||..+|++||.-|..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 79999999999999999864 79999985 899999999999988764
No 86
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.43 E-value=2.8e-07 Score=83.46 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=43.7
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc---CCCCHHHHHHHHHHHh
Q 006407 457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG---TGRSVEEILKATKTVL 509 (646)
Q Consensus 457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~---~~Rt~ke~~~~~k~~l 509 (646)
...++||.+|+..|+.+|++|+.| +|..|+..++ .+||..+|..+|.+++
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 357899999999999999999444 7999999962 3799999999999975
No 87
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.37 E-value=3.8e-07 Score=83.42 Aligned_cols=46 Identities=15% Similarity=0.504 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
...+||++||.+|..++..||. +|..||..|||||..||+.||...
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKNY 55 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhhh
Confidence 4468999999999999999973 799999999999999999999764
No 88
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=8.1e-07 Score=71.56 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=42.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006407 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT-AVPGKTVIQCKKKFA 633 (646)
Q Consensus 582 ~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~-~Vpgrt~~~c~~Ryk 633 (646)
.|......||++|.++|+.||..||++ |.+|+. .||+||..||+.-|-
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKN----FFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSC----HHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCcHHHHHHHHh
Confidence 344556789999999999999999875 999998 699999999998774
No 89
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.35 E-value=5.6e-07 Score=81.58 Aligned_cols=50 Identities=22% Similarity=0.404 Sum_probs=43.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc---CCCCHHHHHHHHHHHh
Q 006407 457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG---TGRSVEEILKATKTVL 509 (646)
Q Consensus 457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~---~~Rt~ke~~~~~k~~l 509 (646)
...++||.||+..|+.+|++|+.| +|..|+..+. .+||..+|..+|.+++
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 357799999999999999999554 7999999752 3799999999999975
No 90
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.9e-07 Score=73.87 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=44.4
Q ss_pred cccccccccccCCC---CCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcch
Q 006407 95 DHYALLGLSHLRYL---ATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP 167 (646)
Q Consensus 95 d~Y~vLGl~~~r~~---At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp 167 (646)
.-|.||||+. . ++.++|+++||+|...+|||+... .-.+..|+.|+++|...
T Consensus 5 EA~~ILgv~~---~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS------------------~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 5 ESCKILNIEE---SKGDLNMDKINNRFNYLFEVNDKEKGGS------------------FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHTTCCG---GGTCCSHHHHHHHHHHHHHHTCGGGTCC------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC---CcCcCCHHHHHHHHHHHHHHhCCCCCCC------------------HHHHHHHHHHHHHHHHH
Confidence 4588999998 7 899999999999999999999753 34677899999998643
No 91
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.30 E-value=2.5e-07 Score=85.19 Aligned_cols=45 Identities=16% Similarity=0.474 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
++||++||.+|..++..|+. ..|..||..|||||..||..||...
T Consensus 3 g~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGP---QNWPRITSFLPNRSPKQCRERWFNH 47 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCS---CCGGGGTTSCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHCCCCHHHHHHHHhhc
Confidence 47999999999999999984 4799999999999999999999543
No 92
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.26 E-value=6.6e-07 Score=98.02 Aligned_cols=43 Identities=21% Similarity=0.509 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA 633 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk 633 (646)
...||.+|..+|++||.+|++ .|..||..|++||..||+.+|.
T Consensus 380 ~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTKT~~Qvk~fy~ 422 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFV 422 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCCCHHHHHHHHH
Confidence 568999999999999999986 4999999999999999999984
No 93
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.24 E-value=2.1e-06 Score=70.60 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVAT-AVPGKTVIQCKKKFA 633 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~-~Vpgrt~~~c~~Ryk 633 (646)
...+||++|.++|+.||..||++ |..|+. .||+||..||+.-|-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKd----f~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKD----FNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSC----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc----HHHHHHHHcCCCCHHHHHHHHH
Confidence 34589999999999999999875 999998 699999999998885
No 94
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.24 E-value=1.2e-06 Score=72.56 Aligned_cols=45 Identities=27% Similarity=0.438 Sum_probs=40.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
..++||+||+.+|.+++..| |. +|..||.+| |||..+|..+|..+
T Consensus 22 ~k~~wT~EED~~L~~l~~~~--G~--kW~~IA~~l--gRt~~q~knRw~~L 66 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKH--GN--DWATIGAAL--GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHH--SS--CHHHHHHHH--TSCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHH--CC--CHHHHHHHh--CCCHHHHHHHHHHH
Confidence 56799999999999999999 43 499999999 69999999999863
No 95
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.54 E-value=1.5e-07 Score=81.14 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=42.9
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..++||.+|+.+|..+|..| |. +|..||.+|+ |||..+|..+|..+|
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~--G~--~W~~IA~~l~-gRt~~q~k~r~~~~l 61 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEH--GR--NWSAIARMVG-SKTVSQCKNFYFNYK 61 (89)
Confidence 56799999999999999999 54 6999999998 699999999999875
No 96
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.22 E-value=1.7e-06 Score=76.61 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 006407 584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV----PGKTVIQCKKKFASLKE 637 (646)
Q Consensus 584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~ 637 (646)
.....+||.+|+.+|..++.+|+.+ +|..|+... ||||..+|++||.-|..
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 4456799999999999999999864 799999876 89999999999988763
No 97
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.6e-06 Score=68.12 Aligned_cols=45 Identities=18% Similarity=0.388 Sum_probs=40.2
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT 507 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~ 507 (646)
...+||++|+.+|..++.+|| .+|..||.+|+ +||+.||+.+|-.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~g----k~w~~Ia~~l~-~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHP----KNFGLIASYLE-RKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHST----TCHHHHHHHCT-TSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHcC-CCCHHHHHHHHHH
Confidence 567999999999999999995 36999999999 6999999998853
No 98
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.18 E-value=2e-06 Score=73.07 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhH----hcCCCCHHHHHHHHHHHh
Q 006407 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEY----IGTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~----~~~~Rt~ke~~~~~k~~l 509 (646)
++||.||+..|+.+|++|+.| +|..|+.. ++ +||..+|..+|.+++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~-~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNAD-HRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCT-TSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccC-CCCHHHHHHHHHHHH
Confidence 489999999999999999554 79999995 65 799999999999975
No 99
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.17 E-value=1.6e-06 Score=85.74 Aligned_cols=43 Identities=21% Similarity=0.509 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA 633 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk 633 (646)
...||.+|..+|++||..|++ +|..||..|||||..||+++|.
T Consensus 133 s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999975 5999999999999999999985
No 100
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.13 E-value=5.3e-06 Score=86.27 Aligned_cols=139 Identities=14% Similarity=0.329 Sum_probs=92.1
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhc----CC-----
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKR----KP----- 528 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~----k~----- 528 (646)
+-+.||..|...|++|+.+| |- +.|+.||..|+ |+|..||...++ ++.+.-.-...++.++..- ..
T Consensus 109 GF~~W~rrdf~~Fi~a~~ky--Gr-~~~~~IA~ev~-~Kt~eEV~~Y~~-vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~ 183 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANEKY--GR-DDIDNIAKDVE-GKTPEEVIEYNA-VFWERCTELQDIERIMGQIERGEGKIQRRL 183 (304)
T ss_dssp SCTTCCHHHHHHHHHHHHHH--CT-TCHHHHTTSST-TCCHHHHHHHHH-HHHHHGGGCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHh--CH-HHHHHHHHHhc-CCCHHHHHHHHH-HHHHhHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999 44 46999999998 699999955443 3322211111222222110 00
Q ss_pred ---------cCccCCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHH
Q 006407 529 ---------AQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALV 599 (646)
Q Consensus 529 ---------~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le 599 (646)
+.....|. .++. .+ -+.....+||.+||+.|.
T Consensus 184 ~~~~~l~~Ki~~~~~P~---~~L~----------------------------------i~--y~~~k~k~yteeEDRfLL 224 (304)
T 1ofc_X 184 SIKKALDQKMSRYRAPF---HQLR----------------------------------LQ--YGNNKGKNYTEIEDRFLV 224 (304)
T ss_dssp HHHHHHHHHHHTCSSHH---HHCC----------------------------------CC--CTTCCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcH---HHhc----------------------------------cc--cCCCCCCccCHHHHHHHH
Confidence 00000010 0000 00 011144589999999999
Q ss_pred HHHHhCCCCCChhHHHHHhh------------CCCCCHHHHHHHHHHHHHHHh
Q 006407 600 QALKTFPKETSQRWERVATA------------VPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 600 ~al~~~p~~~~~rW~~IA~~------------Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
-+|-.||-+.+..|+.|... |-.||+.++..|...|..+|.
T Consensus 225 ~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ie 277 (304)
T 1ofc_X 225 CMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE 277 (304)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999877899999744 447999999999999998875
No 101
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.11 E-value=7.6e-06 Score=74.18 Aligned_cols=51 Identities=20% Similarity=0.349 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 006407 584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV----PGKTVIQCKKKFASLKE 637 (646)
Q Consensus 584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~ 637 (646)
.....+||.+|+.+|..++.+||.+ +|..|+... +|||..+|++||.-|..
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTG---RWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSS---CHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 3456799999999999999999864 799999864 99999999999988763
No 102
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.10 E-value=2.8e-06 Score=76.90 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=45.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC----CCCCHHHHHHHHHHHHH
Q 006407 583 SSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV----PGKTVIQCKKKFASLKE 637 (646)
Q Consensus 583 ~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~ 637 (646)
+.....+||.+|+.+|..++.+|+.+ +|..|+... ||||..+|++||.-|..
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~G---~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGGG---CHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 34456799999999999999999743 899999884 99999999999988775
No 103
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.05 E-value=3.2e-06 Score=84.30 Aligned_cols=50 Identities=12% Similarity=0.374 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCC-CCh-hHHHHHhhCCCCCHHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKE-TSQ-RWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~-~~~-rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
...+||++||..|..++.+||.. .+. .|..||.++||||.++|++||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44589999999999999999852 122 299999999999999999999764
No 104
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.98 E-value=9.1e-06 Score=70.61 Aligned_cols=43 Identities=21% Similarity=0.434 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS 634 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~ 634 (646)
+.||++|..+|+.++..||++ |.+||..||+||..||...|-.
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKN----FGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTC----HHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----HHHHHHHcCCCCHHHHHHHHhc
Confidence 579999999999999999874 9999999999999999998853
No 105
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.95 E-value=1.7e-05 Score=63.13 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH---hhCCCCCHHHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVA---TAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA---~~Vpgrt~~~c~~Ryk~l~ 636 (646)
...+||.||+..|..++++|+. .|..|+ ..++|||..+.++||..|.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHHHHHHHH
Confidence 3458999999999999999974 799999 4678999999999999885
No 106
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.90 E-value=1.2e-05 Score=71.17 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=43.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc---CCCCHHHHHHHHHHHh
Q 006407 457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG---TGRSVEEILKATKTVL 509 (646)
Q Consensus 457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~---~~Rt~ke~~~~~k~~l 509 (646)
...++||.||+..|+.+|++|+.| +|..|+..++ .+||..+|..+|.+++
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 357899999999999999999554 7999999663 3799999999999975
No 107
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.89 E-value=9.1e-05 Score=62.89 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=52.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006407 584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK 643 (646)
.....-||.++|+.|..+.+.-+.. ++.|..||..+.+||.+|+.+||..|..+|..-.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s-~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQ-PHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSC-TTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeccccCHHHHHHHHhcCCC-hhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 3455689999999999999998764 6899999999999999999999999999998644
No 108
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.02 E-value=2.6e-06 Score=68.49 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHhhhh
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~kK 643 (646)
.-||.++|+.|..+.+.-+.+ ++.|..||..+ |||++|+.+||..|+.+|...|
T Consensus 15 vlWTReeDR~IL~~cq~~G~s-~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPS-SKTFAYLAAKL-DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 469999999999999988765 58999999999 9999999999999999998766
No 109
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.42 E-value=0.00043 Score=73.58 Aligned_cols=142 Identities=15% Similarity=0.282 Sum_probs=92.7
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhc-----------
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKR----------- 526 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~----------- 526 (646)
+-+.||.-|-..|++|+.+| |- +.-+.||..|++|+|..||. +|-.+..+.-.-...++.++..-
T Consensus 122 GF~~WnrrDF~~FI~a~~ky--GR-~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~ 197 (374)
T 2y9y_A 122 GFTNWNKLEFRKFITVSGKY--GR-NSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVK 197 (374)
T ss_dssp CCCCSCHHHHHHHHHHHHHH--CT-TCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHh--CH-hHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999 54 46999999997679999997 55444333211111111111100
Q ss_pred -------CCcCccCCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHH
Q 006407 527 -------KPAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALV 599 (646)
Q Consensus 527 -------k~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le 599 (646)
+.+.....|+ .++. .+...+......||.+||+.|.
T Consensus 198 ~~~~~L~~Ki~~y~~P~---~~L~----------------------------------i~y~~~~~k~k~yteeEDRfLL 240 (374)
T 2y9y_A 198 MQQEALRRKLSEYKNPF---FDLK----------------------------------LKHPPSSNNKRTYSEEEDRFIL 240 (374)
T ss_dssp HHHHHHHHHHTTCSSHH---HHCC----------------------------------CSSCCCCSSCCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCH---HHce----------------------------------eccCCCCCCCCccCHHHHHHHH
Confidence 0000000110 0000 0000111134579999999999
Q ss_pred HHHHhCCCCCChhHHHHHhh------------CCCCCHHHHHHHHHHHHHHHh
Q 006407 600 QALKTFPKETSQRWERVATA------------VPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 600 ~al~~~p~~~~~rW~~IA~~------------Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
-+|-.||-+.+.-|++|-.. +-.||+.++.+|...|..+|.
T Consensus 241 ~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 241 LMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999998777889999655 446999999999999998875
No 110
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.37 E-value=0.00023 Score=56.73 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=41.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHh---HhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE---YIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~---~~~~~Rt~ke~~~~~k~~l 509 (646)
...+||.||+..|..+|.+| |- .|..|+. |+. +||.-++-.+|.++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~--G~--~W~~I~~~y~f~~-~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM--GN--HWNSILWSFPFQK-GRRAVDLAHKYHRLI 56 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH--CS--CHHHHHHHSCCCT-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH--hH--hHHHHHHhCCCcc-CcccchHHHHHHHHH
Confidence 56799999999999999999 53 6999995 655 799999999999853
No 111
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.21 E-value=0.00032 Score=69.38 Aligned_cols=46 Identities=30% Similarity=0.517 Sum_probs=41.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
...+||.+|..+|.+|+.+| | ..|..||.+|| +||+.||...|...
T Consensus 132 ~s~~WTeEE~~lFleAl~kY--G--KDW~~IAk~Vg-TKT~~QcKnfY~~~ 177 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKY--G--RDFQAISDVIG-NKSVVQVKNFFVNY 177 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHH--S--SCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHH--C--cCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 46789999999999999999 5 35999999999 59999999999865
No 112
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.16 E-value=0.0009 Score=57.73 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhhhh
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAV-----PGKTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-----pgrt~~~c~~Ryk~l~~~vk~kK 643 (646)
.+||.+|...|.+..+.|+ -||-.|+... ++||..+.+.||..|...+...+
T Consensus 31 ~~WTkEETd~Lf~L~~~fd----lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT----TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC----CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999995 6999999888 68999999999998887665543
No 113
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00076 Score=54.06 Aligned_cols=44 Identities=23% Similarity=0.468 Sum_probs=38.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHh-HhcCCCCHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE-YIGTGRSVEEILKATK 506 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~-~~~~~Rt~ke~~~~~k 506 (646)
...+||++|..++..+|.+|+. .|..|+. +|+ +||+.||+..|-
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 4568999999999999999954 4999998 688 599999998764
No 114
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.86 E-value=0.0019 Score=52.88 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=38.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHh-HhcCCCCHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE-YIGTGRSVEEILKATK 506 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~-~~~~~Rt~ke~~~~~k 506 (646)
...+||++|..++..++.+|+. .|..|+. +|+ +||+.||+..|-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK----DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4568999999999999999944 3999999 798 599999998774
No 115
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.84 E-value=0.0076 Score=59.16 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc-CCCCHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG-TGRSVEEILKATKT 507 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~-~~Rt~ke~~~~~k~ 507 (646)
....||..|...|++++.+|+. ..+||+.|+.... .++|..+|..-+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~ 55 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGEL 55 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 4568999999999999999932 2469999998642 25898888754443
No 116
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.82 E-value=0.0015 Score=56.66 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=38.9
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATK 506 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k 506 (646)
....||.+|..++.+++..||. .|..||.+|+ +||+.||+..|-
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPK----NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcC-CCCHHHHHHHHh
Confidence 3568999999999999999965 4999999998 599999998764
No 117
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.63 E-value=0.0031 Score=54.40 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc----CCCCHHHHHHHHHHHh
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG----TGRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~----~~Rt~ke~~~~~k~~l 509 (646)
..+||.||...|..+|..| | -||-+|+..+. .+||+.++..||..+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~f--d--lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRF--D--LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHT--T--TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh--C--CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999 4 38999999993 3699999999998763
No 118
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0031 Score=54.96 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccCC------ChhhHHHhhcCCCHHHHHHHHHHhhc
Q 006407 353 EKEKKLLRKERTRLRTLSASVTSQHLLDV------STEDVESLCMSFDMEQLRNLCDKMEK 407 (646)
Q Consensus 353 e~~Kk~lkKekk~lR~~~~~~~~~~~~~~------~~~dve~lc~~l~~e~L~~l~~~l~~ 407 (646)
|+.|++++|.|+.||+.+++ .+||+. .+.||++|+.+|+.++|..|..+|.+
T Consensus 20 eaak~a~kknKRvIR~svKD---anYFGda~~Aa~ID~DVdLIv~klddeeLa~lA~Kl~a 77 (108)
T 2lwx_A 20 QGSKAAKKKNKRAIRNSAKE---ADYFGDADKATTIDEQVGLIVDSLNDEELVSTADKIKA 77 (108)
T ss_dssp -CCHHHHHHHHHHHHHHHHH---TCCTTCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccch---hhhcccccHHHHHHHHHHHHHHhCCHHHHHHHHHHhcc
Confidence 45688999999999999985 566663 24789999999999999999999975
No 119
>4gmq_A Putative ribosome associated protein; ribosome binding, CO-translational chaperone, ribosome-bindi protein; 1.30A {Chaetomium thermophilum var}
Probab=96.14 E-value=0.005 Score=53.43 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccC----------CChhhHHHhhcCCCHHHHHHHHHHhhcc
Q 006407 354 KEKKLLRKERTRLRTLSASVTSQHLLD----------VSTEDVESLCMSFDMEQLRNLCDKMEKS 408 (646)
Q Consensus 354 ~~Kk~lkKekk~lR~~~~~~~~~~~~~----------~~~~dve~lc~~l~~e~L~~l~~~l~~~ 408 (646)
+.|.++||+|+.||+..++ .+||. .++.||++||.+|+.+||..|..+|++.
T Consensus 9 ~~~~~~KKnKR~Ir~svKD---anYF~~ga~~aa~ID~vL~dvdli~~kld~eeLa~lA~kl~~~ 70 (103)
T 4gmq_A 9 AAKNAVKKNKRVLRGSVKE---ANYFVEGEASAATIDAVLNDVDLVITKIDADEIAALAGKLNGL 70 (103)
T ss_dssp ---CHHHHHHHHHHHHHHH---TGGGSSSSCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccccc---ccccCCCCCCHHHHHHHHhhHHHHHHhcCHHHHHHHHHHHhcc
Confidence 4678899999999999984 56775 1234899999999999999999999974
No 120
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.91 E-value=0.007 Score=66.42 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=40.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT 507 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~ 507 (646)
....||.+|..+|.++|.+| |. .|..||..||| ||+.||+..|..
T Consensus 379 ~~~~WT~eE~~~f~~al~~y--Gk--dw~~IA~~VgT-KT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKY--GR--DFQAISDVIGN-KSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHH--TT--CHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHH--Cc--CHHHHHHHhCC-CCHHHHHHHHHH
Confidence 45789999999999999999 53 59999999995 999999998865
No 121
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.91 E-value=0.014 Score=46.11 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhCCC-----CCChhHHHHHh-hCCCCCHHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPK-----ETSQRWERVAT-AVPGKTVIQCKKKFA 633 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~-----~~~~rW~~IA~-~Vpgrt~~~c~~Ryk 633 (646)
.++|.+||.+|..-|..|.. +...-|..|+. .+|+.|-..|+.||.
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~ 54 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYL 54 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHH
Confidence 47999999999999999932 24588999999 899999999999995
No 122
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.57 E-value=0.013 Score=60.86 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF 639 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~v 639 (646)
..||..+-..|+.|+.+||. +.|+.||+.|+|||..++..-|+.+.+.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR---DDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT---TCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCH---HHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 46999999999999999986 47999999999999999988888888766
No 123
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.50 E-value=0.017 Score=48.80 Aligned_cols=57 Identities=19% Similarity=0.507 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHhCC------CCCChhHHHHHhhCC----CCCHHHHHHHHHHHHHHHhhhhc
Q 006407 588 DAWSAVQERALVQALKTFP------KETSQRWERVATAVP----GKTVIQCKKKFASLKENFRSKKS 644 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p------~~~~~rW~~IA~~Vp----grt~~~c~~Ryk~l~~~vk~kK~ 644 (646)
..||.+|..+|..+....- ......|+.||..+- .||..||..+|+-|...++.-|.
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999987531 123468999997653 69999999999999999886553
No 124
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.44 E-value=0.013 Score=49.46 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHh----CCCC--CCcchhHHHhHh---cCCCCHHHHHHHHHHHh
Q 006407 459 EKPWSKEEIELLRKGMQK----YPKG--TSRRWEVISEYI---GTGRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~----~p~g--t~~RW~~IA~~~---~~~Rt~ke~~~~~k~~l 509 (646)
...||.+|..+|+.+... |..| ....|+.||..| |-.||++||..+|+++.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 467999999999999753 3222 224799999998 56799999999999864
No 125
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.40 E-value=0.062 Score=45.73 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=43.6
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
.--.||.|+|..+..+++.-.+ +++.|..||..+| +||..||-.|+.++.
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCC-ChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 3457999999999999999844 4688999999998 599999999999873
No 126
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=94.67 E-value=0.054 Score=42.71 Aligned_cols=49 Identities=6% Similarity=0.119 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhCCC-----CCCcchhHHHh-HhcCCCCHHHHHHHHHHHh
Q 006407 460 KPWSKEEIELLRKGMQKYPK-----GTSRRWEVISE-YIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~-----gt~~RW~~IA~-~~~~~Rt~ke~~~~~k~~l 509 (646)
.++|.+|+..|...|..|.. +++.-|..+|+ .++ ++|-..|+.||...|
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHc
Confidence 58999999999999999922 24568999999 675 799999999998754
No 127
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.66 E-value=0.12 Score=44.30 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc----CCCCHHHHHHHHHHHh
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIG----TGRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~----~~Rt~ke~~~~~k~~l 509 (646)
...||.+|...|-.+|..| + -||-+|+.... .+||++++..||-.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~f--d--lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRF--D--LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHT--T--TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc--C--CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999 2 38999999874 3699999999998763
No 128
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.54 E-value=0.2 Score=43.05 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-----CCCCHHHHHHHHHHHHHHHhh
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAV-----PGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-----pgrt~~~c~~Ryk~l~~~vk~ 641 (646)
..||.+|-..|....+.|. -||--|+..- ++||.++.+.||-.+...+.+
T Consensus 31 ~~WT~eETd~LfdLc~~fd----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999999995 6999999765 379999999999877665443
No 129
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.60 E-value=0.013 Score=47.16 Aligned_cols=47 Identities=9% Similarity=0.271 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006407 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
-.||.|||..+..+++.-++ ++..|..||..+ +||+.||..|+.+++
T Consensus 15 vlWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGP-SSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 46999999999999998844 367899999999 599999999999863
No 130
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.58 E-value=0.27 Score=48.00 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 006407 586 DQDAWSAVQERALVQALKTFPKETSQRWERVAT--AVPGKTVIQCKKKFASLKEN 638 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~--~Vpgrt~~~c~~Ryk~l~~~ 638 (646)
...+||..|...|..|+.+||.. .+||+.|+. .+++||..++..=|..+.+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 44689999999999999999832 479999985 47899999998766666654
No 131
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.03 E-value=1.6 Score=34.82 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh--hCCCCCHHHHHHHHHHHHHHH
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQRWERVAT--AVPGKTVIQCKKKFASLKENF 639 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~--~Vpgrt~~~c~~Ryk~l~~~v 639 (646)
.-.||+|.+..|..|+..+|. ..--|..|.. .|||.|..++.-|.+.-+-.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 347999999999999999983 2345888975 478999999999876655444
No 132
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.83 E-value=14 Score=37.47 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCC-cchhHHHhHh--cCCCCHHHHHHHHHHH
Q 006407 459 EKPWSKEEIELLRKGMQKYPKGTS-RRWEVISEYI--GTGRSVEEILKATKTV 508 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~-~RW~~IA~~~--~~~Rt~ke~~~~~k~~ 508 (646)
.++||.-|+..|.+++.+| |.+ .||+.|+..- . .++...+..-+.++
T Consensus 3 ~~~ltekEiR~l~Ra~~kf--G~~~~R~e~I~~dA~L~-~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKF--GNLKEILDELIADGTLP-VKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHH--SSCTTCHHHHHHTTSSC-CCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHhcccc-cCCHHHHHHHHHHH
Confidence 4689999999999999999 554 5999998753 2 36666555544443
No 133
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.31 E-value=4.3 Score=41.34 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHH--hhCCCCCHHHHHHHHHHHHHHHh
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVA--TAVPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA--~~Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
.+||.-|...|..|+.+||.- .+||+.|+ +.++.|+...++.=|.+|.+.-+
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~-~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c~ 57 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNL-KEILDELIADGTLPVKSFEKYGETYDEMMEAAK 57 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSC-TTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 479999999999999999842 47999997 57899999998888888776543
No 134
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=70.09 E-value=13 Score=29.53 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=37.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-CCCHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-GRSVEEILKATK 506 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-~Rt~ke~~~~~k 506 (646)
..-.||+|....+..||+.+. +..-.|..|-+.||. |.|..+|-.+..
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 345799999999999999995 344468999999974 679888865543
No 135
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=68.61 E-value=4.4 Score=43.03 Aligned_cols=41 Identities=15% Similarity=0.443 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHH
Q 006407 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKF 632 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ry 632 (646)
..||.-+=..|..|+.+||. +.-+.||..|. |||..++. +|
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR---~d~~~IA~ev~~~Kt~eEV~-~Y 165 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR---NSIQAIARELAPGKTLEEVR-AY 165 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT---TCHHHHHSSCCCSSSHHHHH-HH
T ss_pred cccCHHHHHHHHHHHHHhCH---hHHHHHHHHHccCCCHHHHH-HH
Confidence 47999999999999999996 46899999997 99999998 44
No 136
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=58.53 E-value=11 Score=31.51 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCh------------hHHHHHh-----hCCCCCHHHHHHHHHHHHHHHh
Q 006407 587 QDAWSAVQERALVQALKTFPKETSQ------------RWERVAT-----AVPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~------------rW~~IA~-----~Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
...|+++=..+|..||..||...-. |=+-||. +-.-||.+||--|.+.|+.+..
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 3579999999999999999975211 1122332 2345788888888887776543
No 137
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=55.14 E-value=6 Score=44.87 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=24.2
Q ss_pred ccccccccccccCCCCCH--HHHHHHHHHhhhhcCCC
Q 006407 94 QDHYALLGLSHLRYLATE--DQIRKSYRETALKYHPD 128 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~--~eIKkAYrklalk~HPD 128 (646)
.|||.+||++- .... ..|+++||++++..+++
T Consensus 629 ~~~~~~lG~~~---~~~~lr~~~~~ayr~la~~~~~~ 662 (681)
T 2pzi_A 629 ASTNHILGFPF---TSHGLRLGVEASLRSLARVAPTQ 662 (681)
T ss_dssp CSSSEETTEES---SHHHHHHHHHHHHHHHHHHCSSH
T ss_pred CCCcccCCCCC---ChHHHHHHHHHHHHHHHHhCCCh
Confidence 34999999965 3333 55999999999976654
No 138
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=39.19 E-value=71 Score=26.58 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=35.3
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCC------------cchhHHHhHh----cCCCCHHHHHHHHH
Q 006407 458 KEKPWSKEEIELLRKGMQKYPKGTS------------RRWEVISEYI----GTGRSVEEILKATK 506 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~------------~RW~~IA~~~----~~~Rt~ke~~~~~k 506 (646)
+..-|+++=-..|..|+..||+... .|=+.||.|| |.-||.|||-.+-.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQ 69 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQ 69 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHH
Confidence 4567997766789999999986532 2345677777 55689998865543
No 139
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.71 E-value=59 Score=36.42 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=25.2
Q ss_pred hhhhccHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHhhhcC
Q 006407 249 LEQAESRDHKRWMERQN-------AKLTEKARKEEYARIRTLVDNAYKRD 291 (646)
Q Consensus 249 ~e~~e~R~~rR~~Ek~N-------~k~r~k~kke~~~rir~LV~~a~~~D 291 (646)
..++..+..+|.+||+. +..-.+.+.+...|++.+-+-+.+..
T Consensus 306 ~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 306 KAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44566666778887764 33334455566667777655554443
No 140
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=33.37 E-value=1.8e+02 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=13.5
Q ss_pred hhcChhhHHHHHHHHHHHHHHHHH
Q 006407 288 YKRDPRILKRKEAEKAEKQKKKEA 311 (646)
Q Consensus 288 ~~~DpRik~~keeek~~k~~~k~~ 311 (646)
-..||-..-++++.-.+...+-++
T Consensus 35 a~~dPd~vv~RQEAl~aaRlRMQE 58 (89)
T 2q2f_A 35 AAVEPDVVVKRQEALAAARLKMQE 58 (89)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHH
Confidence 347888777766655443333333
Done!