BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006408
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X50|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Domain From Human Galectin-4
Length = 164
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 310 PFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSV 365
PF G+ F L++R G++ + + G+H+ F +R + L I+GDV + V
Sbjct: 102 PFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAHRLS-AFQRVDTLEIQGDVTLSYV 156
>pdb|2YV8|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Galectin-8
pdb|2YXS|A Chain A, Crystal Sturcture Of N-Terminal Domain Of Human Galectin-8
With D- Lactose
Length = 164
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 298 GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIK 357
GRE E+T+ PF + F + + + + + V G+H + +R G E L I
Sbjct: 94 GRE---EITYDTPFKREKSFEIVIXVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIY 148
Query: 358 GDVDIHSV 365
G V+IHS+
Sbjct: 149 GKVNIHSI 156
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 298 GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIK 357
GRE E+T+ PF + F + + + + + V G+H + +R G E L I
Sbjct: 87 GRE---EITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIY 141
Query: 358 GDVDIHSV 365
G V+IHS+
Sbjct: 142 GKVNIHSI 149
>pdb|3AP4|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP4|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
pdb|3AP5|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain
pdb|3AP6|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|C Chain C, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP6|D Chain D, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
3'-Sulfate
pdb|3AP7|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Lactose
Sialic Acid
pdb|3APB|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3APB|B Chain B, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With Iodide
pdb|3AP9|A Chain A, Crystal Structure Of The Galectin-8 N-Terminal
Carbohydrate Recognition Domain In Complex With
Lacto-N-Fucopentaose Iii
Length = 154
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 298 GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIK 357
GRE E+T+ PF + F + + + + + V G+H + +R G E L I
Sbjct: 87 GRE---EITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIY 141
Query: 358 GDVDIHSV 365
G V+IHS+
Sbjct: 142 GKVNIHSI 149
>pdb|3VKN|A Chain A, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKN|B Chain B, Galectin-8 N-Terminal Domain In Free Form
pdb|3VKO|A Chain A, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
pdb|3VKO|B Chain B, Galectin-8 N-Terminal Domain In Complex With
Sialyllactosamine
Length = 153
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 298 GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIK 357
GRE E+T+ PF + F + + + + + V G+H + +R G E L I
Sbjct: 87 GRE---EITYDTPFKREKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIG--PEKIDTLGIY 141
Query: 358 GDVDIHSV 365
G V+IHS+
Sbjct: 142 GKVNIHSI 149
>pdb|4AGG|A Chain A, Structure Of A Tetrameric Galectin From Cinachyrella Sp.
(Ball Sponge)
pdb|4AGG|B Chain B, Structure Of A Tetrameric Galectin From Cinachyrella Sp.
(Ball Sponge)
pdb|4AGR|A Chain A, Structure Of A Tetrameric Galectin From Cinachyrella Sp.
(Ball Sponge)
pdb|4AGR|B Chain B, Structure Of A Tetrameric Galectin From Cinachyrella Sp.
(Ball Sponge)
pdb|4AGR|C Chain C, Structure Of A Tetrameric Galectin From Cinachyrella Sp.
(Ball Sponge)
pdb|4AGR|D Chain D, Structure Of A Tetrameric Galectin From Cinachyrella Sp.
(Ball Sponge)
pdb|4AGV|A Chain A, Structure Of A Tetrameric Galectin From Cinachyrella Sp. (
Ball Sponge)
pdb|4AGV|B Chain B, Structure Of A Tetrameric Galectin From Cinachyrella Sp. (
Ball Sponge)
pdb|4AGV|C Chain C, Structure Of A Tetrameric Galectin From Cinachyrella Sp. (
Ball Sponge)
pdb|4AGV|D Chain D, Structure Of A Tetrameric Galectin From Cinachyrella Sp. (
Ball Sponge)
Length = 146
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 295 RFIGREQKPEVT---WPFPFVEGRLFILTLRA--GVEGYHINVGGRHVTSFPYRTGF 346
+F G E PEV +PFP G + +T+R G +G+ ++ G + +PYR G
Sbjct: 62 KFAGGEWGPEVRPEGFPFPCC-GYVTTITVRVEIGADGFTLSANGIEIVKYPYRDGL 117
>pdb|2WSU|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|C Chain C, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSU|D Chain D, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre
pdb|2WSV|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lactose
pdb|2WT0|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With N-Acetyl-Lactosamine
pdb|2WT1|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Lacto-N-Neo-Tetraose
pdb|2WT2|A Chain A, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
pdb|2WT2|B Chain B, Galectin Domain Of Porcine Adenovirus Type 4 Nadc-1
Isolate Fibre Complexed With Tri(N-Acetyl-Lactosamine)
Length = 343
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 298 GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIK 357
G E +P+ FPF + F+L + + Y I V G+ + FP R L+ T ++
Sbjct: 100 GEEVRPQ---EFPFEREKPFVLVIVIQSDTYQITVNGKPLVDFPQR----LQGITRASLS 152
Query: 358 GDV 360
GD+
Sbjct: 153 GDL 155
>pdb|2W00|A Chain A, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W00|B Chain B, Crystal Structure Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1038
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 19 DEKLVGYNGDSDLSKPFFSSVYKDTFHRKLEDNENQEAPLMPREV 63
DEK++ + D + +P F S+ +T +KL ENQ+A L P +
Sbjct: 469 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPXRI 513
>pdb|2Y3T|A Chain A, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|B Chain B, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|C Chain C, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2Y3T|D Chain D, Mutant (K220e) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 1033
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 19 DEKLVGYNGDSDLSKPFFSSVYKDTFHRKLEDNENQEAPLMPREV 63
DEK++ + D + +P F S+ +T +KL ENQ+A L P +
Sbjct: 469 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRI 513
>pdb|2W74|B Chain B, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
pdb|2W74|D Chain D, Mutant (K220r) Of The Hsdr Subunit Of The Ecor124i
Restriction Enzyme In Complex With Atp
Length = 875
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 19 DEKLVGYNGDSDLSKPFFSSVYKDTFHRKLEDNENQEAPLMPREV 63
DEK++ + D + +P F S+ +T +KL ENQ+A L P +
Sbjct: 458 DEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRI 502
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 312 VEGRLFILTLRAGVEGYHINVGGRH--------VTSFPYRTGFTLEDATGLAIKGDVDIH 363
+ RL T+ + G I GG H + SF GFT+ ATG I+ D H
Sbjct: 83 LNARLAAETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTV--ATGPEIEDDY--H 138
Query: 364 SVYATNLPASHPS 376
+ A N+P HP+
Sbjct: 139 NFDALNIPGHHPA 151
>pdb|3AJZ|A Chain A, Crystal Structure Of Ancestral Congerin Con-Anc
Length = 135
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 301 QKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTG 345
Q+ + + FPF G F +T+ ++ ++I + H FP R G
Sbjct: 70 QQEQRSKNFPFTAGEHFQITITFDIDTFYIQLPDGHKVEFPNRHG 114
>pdb|3AK0|A Chain A, Crystal Structure Of Ancestral Congerin Con-Anc'-N28k
pdb|3AK0|B Chain B, Crystal Structure Of Ancestral Congerin Con-Anc'-N28k
Length = 135
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 301 QKPEVTWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTG 345
Q+ + + FPF G F +T+ ++ ++I + H FP R G
Sbjct: 70 QQEQRSKNFPFTAGEHFQITITFDIDTFYIQLPDGHKVEFPNRHG 114
>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSF|B Chain B, Escherichia Coli Seca, The Preprotein Translocase Dimeric
Atpase
pdb|2FSH|A Chain A, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSH|B Chain B, Complex Seca:amp-Pnp From Escherichia Coli
pdb|2FSI|A Chain A, Complex Seca:adp From Escherichia Coli
pdb|2FSI|B Chain B, Complex Seca:adp From Escherichia Coli
Length = 853
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 14 NYIGLDEKLVGYNGDSDLSKPFFSSVYK 41
NY L EKL G G +D FSS+YK
Sbjct: 371 NYFRLYEKLAGMTGTADTEAFEFSSIYK 398
>pdb|2VDA|A Chain A, Solution Structure Of The Seca-Signal Peptide Complex
Length = 828
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 14 NYIGLDEKLVGYNGDSDLSKPFFSSVYK 41
NY L EKL G G +D FSS+YK
Sbjct: 371 NYFRLYEKLAGMTGTADTEAFEFSSIYK 398
>pdb|3BXZ|A Chain A, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
pdb|3BXZ|B Chain B, Crystal Structure Of The Isolated Dead Motor Domains From
Escherichia Coli Seca
Length = 471
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 14 NYIGLDEKLVGYNGDSDLSKPFFSSVYK 41
NY L EKL G G +D FSS+YK
Sbjct: 241 NYFRLYEKLAGMTGTADTEAFEFSSIYK 268
>pdb|2FSG|A Chain A, Complex Seca:atp From Escherichia Coli
pdb|2FSG|B Chain B, Complex Seca:atp From Escherichia Coli
Length = 853
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 14 NYIGLDEKLVGYNGDSDLSKPFFSSVYK 41
NY L EKL G G +D FSS+YK
Sbjct: 371 NYFRLYEKLAGXTGTADTEAFEFSSIYK 398
>pdb|2YRO|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Protein From Human Galectin-8
Length = 155
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 254 CDGLSSK-KDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFV 312
D L+ K KD + ++ L + ++RN S+ + G E++ + FPF
Sbjct: 48 VDLLAGKSKDIALHLNPRLNIKAFVRN-----------SFLQESWGEEERNITS--FPFS 94
Query: 313 EGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPA 372
G F + + V + + V G H + +R L L I GD+ + V + + P+
Sbjct: 95 PGMYFEMIIYCDVREFKVAVNGVHSLEYKHRFK-ELSSIDTLEINGDIHLLEVRSWSGPS 153
Query: 373 S 373
S
Sbjct: 154 S 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,463,135
Number of Sequences: 62578
Number of extensions: 891601
Number of successful extensions: 1657
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1641
Number of HSP's gapped (non-prelim): 23
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)