Query 006408
Match_columns 646
No_of_seqs 363 out of 2114
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 22:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 1E-130 2E-135 1100.9 52.2 521 101-646 103-636 (636)
2 KOG2287 Galactosyltransferases 100.0 9.2E-61 2E-65 512.1 28.5 333 306-646 5-349 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.1E-48 2.3E-53 418.6 19.6 240 345-610 103-355 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 7.8E-44 1.7E-48 351.2 17.3 183 413-597 1-190 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 2.3E-35 4.9E-40 312.2 19.9 232 387-638 73-358 (382)
6 KOG2288 Galactosyltransferases 100.0 6.1E-34 1.3E-38 285.8 17.7 241 396-644 8-271 (274)
7 smart00276 GLECT Galectin. Gal 100.0 8.6E-30 1.9E-34 236.5 16.3 127 157-367 1-127 (128)
8 PF00337 Gal-bind_lectin: Gala 100.0 2.2E-29 4.9E-34 234.1 15.2 132 156-367 1-133 (133)
9 cd00070 GLECT Galectin/galacto 100.0 2.8E-29 6.1E-34 232.5 15.3 127 156-366 1-127 (127)
10 KOG3587 Galectin, galactose-bi 99.9 8.9E-25 1.9E-29 207.1 15.2 137 155-369 4-140 (143)
11 PF02434 Fringe: Fringe-like; 99.7 4.2E-18 9E-23 175.7 10.4 183 400-597 7-198 (252)
12 KOG2246 Galactosyltransferases 99.6 2.3E-15 4.9E-20 162.6 12.6 165 397-597 89-264 (364)
13 PLN03153 hypothetical protein; 99.1 9.8E-10 2.1E-14 121.9 14.9 173 399-597 122-308 (537)
14 KOG3708 Uncharacterized conser 97.7 0.00018 3.9E-09 79.7 10.4 195 400-636 27-244 (681)
15 PF13641 Glyco_tranf_2_3: Glyc 95.3 0.22 4.7E-06 49.2 11.9 184 401-597 3-198 (228)
16 TIGR03472 HpnI hopanoid biosyn 94.5 1.3 2.7E-05 48.4 16.3 158 432-597 70-241 (373)
17 cd02520 Glucosylceramide_synth 94.0 0.63 1.4E-05 45.4 11.3 133 432-597 30-165 (196)
18 PF01755 Glyco_transf_25: Glyc 93.8 0.96 2.1E-05 44.5 12.4 99 403-512 4-107 (200)
19 cd04184 GT2_RfbC_Mx_like Myxoc 93.1 7.5 0.00016 37.3 17.1 154 433-597 32-189 (202)
20 cd04196 GT_2_like_d Subfamily 92.5 2.4 5.2E-05 40.9 12.7 170 416-595 11-190 (214)
21 cd04192 GT_2_like_e Subfamily 91.8 6.5 0.00014 38.3 15.1 131 459-596 55-195 (229)
22 cd04186 GT_2_like_c Subfamily 91.5 6.1 0.00013 36.1 13.7 83 485-597 70-153 (166)
23 cd04187 DPM1_like_bac Bacteria 91.3 2 4.3E-05 40.9 10.6 132 433-570 30-164 (181)
24 cd02510 pp-GalNAc-T pp-GalNAc- 90.6 12 0.00026 39.1 16.5 116 480-597 74-213 (299)
25 cd06423 CESA_like CESA_like is 90.3 3.4 7.3E-05 37.3 10.7 92 479-570 68-171 (180)
26 PRK11204 N-glycosyltransferase 90.1 7.3 0.00016 42.8 15.0 146 437-597 87-248 (420)
27 cd06433 GT_2_WfgS_like WfgS an 90.0 7.3 0.00016 36.7 13.2 115 479-597 65-182 (202)
28 cd06421 CESA_CelA_like CESA_Ce 89.9 1.6 3.5E-05 42.9 8.9 112 481-597 76-199 (234)
29 PF00535 Glycos_transf_2: Glyc 89.8 3 6.6E-05 37.7 10.0 154 402-568 3-168 (169)
30 PF13506 Glyco_transf_21: Glyc 89.6 0.42 9E-06 47.0 4.3 117 476-597 18-142 (175)
31 cd06420 GT2_Chondriotin_Pol_N 89.3 7.2 0.00016 36.7 12.5 99 480-597 70-168 (182)
32 cd06439 CESA_like_1 CESA_like_ 89.3 10 0.00022 37.9 14.3 180 400-597 30-217 (251)
33 cd02525 Succinoglycan_BP_ExoA 89.2 23 0.00051 34.8 16.6 155 432-597 31-196 (249)
34 cd04185 GT_2_like_b Subfamily 89.2 7 0.00015 37.7 12.5 92 479-597 70-162 (202)
35 cd06435 CESA_NdvC_like NdvC_li 88.5 8 0.00017 38.3 12.7 113 480-597 73-197 (236)
36 TIGR03469 HonB hopene-associat 88.4 5.1 0.00011 44.0 12.2 105 489-597 133-250 (384)
37 PRK14583 hmsR N-glycosyltransf 88.3 8.3 0.00018 43.2 14.0 153 432-597 104-269 (444)
38 cd06532 Glyco_transf_25 Glycos 88.2 3.1 6.6E-05 38.6 8.8 110 403-571 2-116 (128)
39 cd04191 Glucan_BSP_ModH Glucan 88.0 6.2 0.00014 41.1 11.9 187 403-597 3-219 (254)
40 cd06434 GT2_HAS Hyaluronan syn 87.9 12 0.00027 36.8 13.6 157 433-597 29-201 (235)
41 COG1215 Glycosyltransferases, 87.2 29 0.00063 37.9 17.3 186 399-597 54-253 (439)
42 cd04195 GT2_AmsE_like GT2_AmsE 86.9 6.7 0.00015 37.7 10.8 150 434-597 31-189 (201)
43 COG1216 Predicted glycosyltran 85.5 29 0.00063 36.7 15.6 135 458-597 55-208 (305)
44 cd02526 GT2_RfbF_like RfbF is 84.4 44 0.00095 32.9 17.6 106 489-597 75-192 (237)
45 PLN02726 dolichyl-phosphate be 83.5 47 0.001 33.5 15.6 111 480-597 84-206 (243)
46 cd06427 CESA_like_2 CESA_like_ 83.5 20 0.00043 36.0 12.8 114 479-597 74-200 (241)
47 cd04188 DPG_synthase DPG_synth 80.6 20 0.00044 35.0 11.3 154 432-597 30-196 (211)
48 cd04179 DPM_DPG-synthase_like 80.3 13 0.00027 35.1 9.4 118 447-569 42-167 (185)
49 PF13632 Glyco_trans_2_3: Glyc 79.8 7.4 0.00016 37.5 7.8 100 492-597 1-112 (193)
50 cd06442 DPM1_like DPM1_like re 73.2 33 0.00071 33.4 10.5 89 481-569 70-167 (224)
51 PF10111 Glyco_tranf_2_2: Glyc 72.8 1.1E+02 0.0024 32.0 14.8 160 431-597 33-210 (281)
52 cd06437 CESA_CaSu_A2 Cellulose 71.7 98 0.0021 30.6 13.6 113 480-597 78-201 (232)
53 PRK10714 undecaprenyl phosphat 71.6 63 0.0014 34.8 13.0 130 432-570 38-174 (325)
54 PF04646 DUF604: Protein of un 71.6 5.5 0.00012 41.8 4.6 43 554-597 12-57 (255)
55 TIGR01556 rhamnosyltran L-rham 69.4 49 0.0011 34.1 11.2 114 480-597 65-189 (281)
56 PRK14716 bacteriophage N4 adso 68.8 49 0.0011 38.2 11.9 106 489-597 158-277 (504)
57 PRK05454 glucosyltransferase M 64.7 85 0.0019 37.7 13.2 198 398-605 123-350 (691)
58 TIGR03030 CelA cellulose synth 59.1 2E+02 0.0043 34.7 15.0 120 472-597 212-346 (713)
59 PRK11498 bcsA cellulose syntha 56.0 1.4E+02 0.003 37.0 13.0 112 480-597 330-457 (852)
60 cd02522 GT_2_like_a GT_2_like_ 55.9 2E+02 0.0043 27.8 15.6 106 481-597 64-175 (221)
61 PF00853 Runt: Runt domain; I 54.2 16 0.00034 34.5 3.7 31 294-335 87-126 (135)
62 cd00761 Glyco_tranf_GTA_type G 49.8 1.7E+02 0.0037 25.3 13.8 82 480-595 68-151 (156)
63 cd02514 GT13_GLCNAC-TI GT13_GL 48.8 1.1E+02 0.0024 33.6 9.8 84 479-568 87-174 (334)
64 KOG1594 Uncharacterized enzyme 46.4 73 0.0016 34.0 7.5 119 207-365 65-190 (305)
65 TIGR03111 glyc2_xrt_Gpos1 puta 43.5 5.1E+02 0.011 29.0 14.8 110 479-593 121-250 (439)
66 KOG3982 Runt and related trans 33.7 40 0.00087 37.2 3.4 30 294-334 184-222 (475)
67 cd04190 Chitin_synth_C C-termi 31.9 59 0.0013 33.0 4.3 110 488-597 72-208 (244)
68 cd06438 EpsO_like EpsO protein 30.4 4.7E+02 0.01 24.7 11.1 77 488-567 80-169 (183)
69 cd06913 beta3GnTL1_like Beta 1 28.9 2.2E+02 0.0048 27.7 7.7 34 481-514 76-109 (219)
70 COG4092 Predicted glycosyltran 25.6 2.2E+02 0.0049 30.6 7.1 65 448-512 51-117 (346)
71 COG3306 Glycosyltransferase in 25.2 1.8E+02 0.0038 30.7 6.4 170 403-591 5-192 (255)
72 PRK11234 nfrB bacteriophage N4 24.9 1.3E+03 0.029 28.1 18.2 156 432-597 93-274 (727)
73 PHA01631 hypothetical protein 24.1 1.4E+02 0.003 29.8 4.9 65 487-571 69-133 (176)
74 PF04666 Glyco_transf_54: N-Ac 21.1 4.9E+02 0.011 28.1 8.9 109 395-505 48-185 (297)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=9.8e-131 Score=1100.93 Aligned_cols=521 Identities=39% Similarity=0.690 Sum_probs=480.5
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhcccc-c-cccC--CCCCCCCCCCCCcee-cccccccCCCeEEEcCCCCCCCcEEEEEE
Q 006408 101 VLERMADEAWTLGLKAWDEVDKFDVK-E-TVSS--NVYEGKPESCPSWLS-MSGEELANGDRLMFLPCGLAAGSSITVVG 175 (646)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~cp~sv~-~~~~~~~~~~~~~~lP~GL~~Gs~itV~G 175 (646)
.....|.+||+||+.||++|.+++++ . ...+ +..+.++.+||+||+ ++++++.+++|++.|||||++|++|||+|
T Consensus 103 ~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G 182 (636)
T PLN03133 103 QVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIG 182 (636)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEE
Confidence 36678999999999999999998773 2 2222 223567789999999 69999988899999999999999999999
Q ss_pred EcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEccccCCCCC-CCCEEEEeccc-CCcccceee
Q 006408 176 TPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWS-HRPVIEHNTCY-RMQWGTAQR 253 (646)
Q Consensus 176 ~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~-~~pvIv~Nt~~-~~~WG~eeR 253 (646)
+|+..+ ++|+|||+|+...+++++||||||||||++||+ ++|+||||||+ +|+||.|||
T Consensus 183 ~p~~~~-------------------~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~EER 243 (636)
T PLN03133 183 IPDGLL-------------------GNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGEEER 243 (636)
T ss_pred EeCCCC-------------------CeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccHhhh
Confidence 999754 499999999876666788999999999999975 79999999999 999999999
Q ss_pred cCCCCCCCCCCccccchhhhhhccccCccccccccccccccccc-cccCCCCCCCCCCCCCCCeEEEEEEEccceEEEEe
Q 006408 254 CDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFI-GREQKPEVTWPFPFVEGRLFILTLRAGVEGYHINV 332 (646)
Q Consensus 254 c~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~V 332 (646)
|++|+|++|+ +||||++||||+++++.++++++++||++|+| ++++++..+|+|||++|++|++||+||.|||||+|
T Consensus 244 c~~~~~~~~~--~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~V 321 (636)
T PLN03133 244 CPSPDPDKNK--KVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTV 321 (636)
T ss_pred cCCCCccccc--cccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEE
Confidence 9999999995 79999999999999999999999999999998 77889999999999999999999999999999999
Q ss_pred CCeEEEEeecccCcCcccceEEEEecccceeeeecccCCCCCCCcchhhhhhhhhhhccCCCC-CCCceEEEEEeCCCCC
Q 006408 333 GGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLP-ARPVHLFIGVLSATNH 411 (646)
Q Consensus 333 nG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a~slP~s~~sf~p~~~~e~~~~~kapp~p-~~~v~LlI~V~Sap~~ 411 (646)
||+|+|+|+||+++++|.|++|+|+|||+|+||.+.++|.+|++ .+..+.+.|++||++ +++++|||+|+|+++|
T Consensus 322 nG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~----~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~n 397 (636)
T PLN03133 322 DGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDS----EHVIDLEALKSPPLSPKKPLDLFIGVFSTANN 397 (636)
T ss_pred CCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCch----hcccchHHhcCCCCCCCCceEEEEEEeCCccc
Confidence 99999999999998999999999999999999999999999986 577789999999988 5679999999999999
Q ss_pred HHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCce
Q 006408 412 FAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAA 491 (646)
Q Consensus 412 ~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~ak 491 (646)
|+||+|||+|||+...+++..++++||||.+.+..++..|++|+++|+|||++||.|+|+|+|+||++++.|+.+|++++
T Consensus 398 f~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~ak 477 (636)
T PLN03133 398 FKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAK 477 (636)
T ss_pred HHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCce
Confidence 99999999999998776677899999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCcccc--ccceeccccCCCCCCCCCCCCCeEEeCHHHHHHHH
Q 006408 492 YIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIV 569 (646)
Q Consensus 492 fvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~--sKWyVs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv 569 (646)
||||+|||+|||+++|+++|+.....+.+|+|++..+.+|+|+ +|||||+++||++.|||||+|+|||||+|+|++|+
T Consensus 478 FilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~ 557 (636)
T PLN03133 478 YVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVY 557 (636)
T ss_pred EEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHH
Confidence 9999999999999999999988776778999999999999997 99999999999999999999999999999999999
Q ss_pred HHhcCCccCCCCCChHHHHHHHHHcCCC-CCcccccCCCcccCCcCCceEEEecCCHHHHHHHHHHhcCC-CCCCCCCC
Q 006408 570 LQHGNQSLRLFKMEDVSMGMWVEQFNST-MTVRYSHSWKFCQYGCMEGYYTAHYQSPRQMICLWDKLSRG-RAHCCNFR 646 (646)
Q Consensus 570 ~~~~~~~l~~f~~EDV~iGi~l~~lgi~-~pV~y~h~~r~c~~~C~~~~it~H~~sP~~M~~lW~~l~~~-~~~Cc~~~ 646 (646)
.+..+..+++|++||||||+|+++++.. .++.|.|+.++|..+|..++|++|+++|++|+++|++|+++ +++||+++
T Consensus 558 ~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~sP~eM~~lW~~l~~~~~~~Cc~~~ 636 (636)
T PLN03133 558 KRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQSPREMLCLWQKLQEGKRATCCGEW 636 (636)
T ss_pred HhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecCCHHHHHHHHHHHhccCCCCccCCC
Confidence 8754567899999999999999876532 35788899999999999999999999999999999999965 59999975
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-61 Score=512.09 Aligned_cols=333 Identities=34% Similarity=0.546 Sum_probs=298.9
Q ss_pred CCCCCCCCCCeEEEEEEEccceEEEEeCCeEEEEeecccCcCcccceEEEEecccceeeeecccCCCCCCCcchhhhhhh
Q 006408 306 TWPFPFVEGRLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEM 385 (646)
Q Consensus 306 ~~~fPF~~G~~F~lti~~g~egf~v~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a~slP~s~~sf~p~~~~e~ 385 (646)
.+.+|+..+..|+.++.++.+++++.++++|.++|.++..++.+..++...++.+..+.....+.+.+...+....++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 83 (349)
T KOG2287|consen 5 EFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQKFFYLL- 83 (349)
T ss_pred cccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhccChhhh-
Confidence 4679999999999999999999999999999999999998888999999999999888888888888777654433332
Q ss_pred hhhhccCCCCCC--CceEEEEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCCh-hHHHHHHHHHhhcCcEE
Q 006408 386 SSKWKAEPLPAR--PVHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRK-EVNAVLKKEAAFFGDIV 462 (646)
Q Consensus 386 ~~~~kapp~p~~--~v~LlI~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~-~~~~~L~~Eae~ygDII 462 (646)
..|+.|.. +++|+|+|+|+++|++||++||+|||+...+++++++++|+||++.++ +++..|++|++.|||||
T Consensus 84 ----~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi 159 (349)
T KOG2287|consen 84 ----YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDII 159 (349)
T ss_pred ----cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEE
Confidence 23333322 489999999999999999999999999998889999999999998865 57899999999999999
Q ss_pred EEeecccccchhHHHHHHHhhhhh-cCCceEEEEecCCccccHHHHHHHHhhc-CCCcceEEEeeccCCCcccc--ccce
Q 006408 463 ILPFMDRYELVVLKTIAICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLNLLHRPLRT--GKWA 538 (646)
Q Consensus 463 ~~df~DsY~nLtlKtl~~l~wa~~-~~~akfvmKvDDDtfVnvd~Ll~~L~~~-~~~~~lY~G~v~~~~~P~R~--sKWy 538 (646)
++||.|+|.|+|+||+++++|+.. |++++||||+|||+||++++|+++|++. ++...+|+|.+.....|+|+ +|||
T Consensus 160 ~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~Kwy 239 (349)
T KOG2287|consen 160 QVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWY 239 (349)
T ss_pred EEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCc
Confidence 999999999999999999999998 5589999999999999999999999998 78889999999999999997 9999
Q ss_pred eccccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHc-CCCCCcccccCCC---cccCCcC
Q 006408 539 VTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQF-NSTMTVRYSHSWK---FCQYGCM 614 (646)
Q Consensus 539 Vs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~l-gi~~pV~y~h~~r---~c~~~C~ 614 (646)
||+++||++.|||||+|+|||||+++|++|+++ +.+.+++++|||+||+|+++. |+. |+++.+... .|+.+|.
T Consensus 240 Vp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~--s~~~~~~~iEDV~~g~~l~~~~gi~-~~~~~~~~~~~~~~~~~~~ 316 (349)
T KOG2287|consen 240 VPESEYPCSVYPPYASGPGYVISGDAARRLLKA--SKHLKFFPIEDVFVGGCLAEDLGIK-PVNHPGFFEIPLSFDPCCY 316 (349)
T ss_pred cCHHHCCCCCCCCcCCCceeEecHHHHHHHHHH--hcCCCccchHHHHHHHHHHHhcCCC-cccCcccccccccCCCCcc
Confidence 999999999999999999999999999999996 678899999999999999998 877 776655333 3467788
Q ss_pred CceEEEecCCHHHHHHHHHHhcC-CCCCCCCCC
Q 006408 615 EGYYTAHYQSPRQMICLWDKLSR-GRAHCCNFR 646 (646)
Q Consensus 615 ~~~it~H~~sP~~M~~lW~~l~~-~~~~Cc~~~ 646 (646)
.+++++|+++|.+|.++|++++. .+..||+.+
T Consensus 317 ~~~~~~H~~~p~e~~~~w~~~~~~~~~~c~~~~ 349 (349)
T KOG2287|consen 317 RDLLAVHRLSPNEMIYLWKKLKDLANLKCKNLR 349 (349)
T ss_pred cceEEEecCCHHHHHHHHHHhhcccccccccCC
Confidence 99999999999999999999997 889999864
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-48 Score=418.60 Aligned_cols=240 Identities=23% Similarity=0.349 Sum_probs=205.1
Q ss_pred CcCcccceEEEEecccceeeeecccCCCCCCCcchhhhhhhhhhhccCCCCCCCceEEEEEeCCCCCHHHHHHHHHHhhc
Q 006408 345 GFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPVHLFIGVLSATNHFAERMAIRKTWMQ 424 (646)
Q Consensus 345 ~~~l~~v~~l~v~GDv~l~sV~a~slP~s~~sf~p~~~~e~~~~~kapp~p~~~v~LlI~V~Sap~~~~rR~aIR~TW~~ 424 (646)
++++|.++..+ +.++.+.++|.++++= .+ +...+++++|+|+|.|+++|++||++||+|||+
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~ 164 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLK----------KT--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMP 164 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCcccccc----------cc--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcC
Confidence 34677777766 6666778888887741 11 223356799999999999999999999999998
Q ss_pred cccc-----CCCceEEEEEEeeCC--ChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEec
Q 006408 425 SSKI-----KSSNVVARFFVALNP--RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCD 497 (646)
Q Consensus 425 ~~~i-----~~~~v~~~FfVG~~~--~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvD 497 (646)
.... ....++++|+||.+. +..++.+|.+|++.|||||++||+|+|.|||+||+++|+|+.++++++|+||+|
T Consensus 165 ~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~D 244 (408)
T PLN03193 165 QGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVD 244 (408)
T ss_pred CcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcC
Confidence 6542 136799999999986 568999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHhhcCCCcceEEEeeccCCCcccc--ccceeccccC----CCCCCCCCCCCCeEEeCHHHHHHHHHH
Q 006408 498 DDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEW----PQEVYPPYANGPGYVISSDIAKFIVLQ 571 (646)
Q Consensus 498 DDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~--sKWyVs~eey----p~~~YPpY~~G~GYVLSrdla~~Iv~~ 571 (646)
||+|||+++|+.+|+.......+|+|++.. .|+|+ ++||+++++| +.+.|||||+|+|||||+|+|+.|+.+
T Consensus 245 DDvfVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n 322 (408)
T PLN03193 245 DDVHVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISIN 322 (408)
T ss_pred CCceEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhC
Confidence 999999999999998765555799999975 47785 7778888888 568999999999999999999999975
Q ss_pred hcCCccCCCCCChHHHHHHHHHcCCCCCcccccCCCccc
Q 006408 572 HGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQ 610 (646)
Q Consensus 572 ~~~~~l~~f~~EDV~iGi~l~~lgi~~pV~y~h~~r~c~ 610 (646)
...++.|++|||+||+|+..++ |+|+|+.+||.
T Consensus 323 --~~~L~~y~~EDV~vG~Wl~~L~----V~~vdd~~fcc 355 (408)
T PLN03193 323 --QHVLHKYANEDVSLGSWFIGLD----VEHIDDRRLCC 355 (408)
T ss_pred --hhhhcccCcchhhhhhHhccCC----ceeeecccccC
Confidence 4578889999999999997665 66899999985
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=7.8e-44 Score=351.16 Aligned_cols=183 Identities=33% Similarity=0.602 Sum_probs=170.3
Q ss_pred HHHHHHHHHhhcccccCCCceEEEEEEeeCC--ChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcC-C
Q 006408 413 AERMAIRKTWMQSSKIKSSNVVARFFVALNP--RKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNV-T 489 (646)
Q Consensus 413 ~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~--~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~-~ 489 (646)
+||++||+||++.....+.+++++|+||.++ +..++..|.+|+++|+|||++||.|+|.|+++||+++++|+.++| +
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998877778999999999998 778888999999999999999999999999999999999999877 5
Q ss_pred ceEEEEecCCccccHHHHHHHHhhc--CCCcceEEEeeccCCCcccc--ccceeccccCCCCCCCCCCCCCeEEeCHHHH
Q 006408 490 AAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIA 565 (646)
Q Consensus 490 akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~~~~~P~R~--sKWyVs~eeyp~~~YPpY~~G~GYVLSrdla 565 (646)
++|++|+|||+|||+++|.++|... ......++|.+....+|+|+ +|||+++++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999987 44566777888888889996 8999999999999999999999999999999
Q ss_pred HHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 566 KFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 566 ~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
+.|+.. +..++++++|||++|+|+.++|++
T Consensus 161 ~~i~~~--~~~~~~~~~eDv~iGi~~~~~~i~ 190 (195)
T PF01762_consen 161 KRIYKA--SSHTPFFPLEDVFIGILAEKLGIK 190 (195)
T ss_pred HHHHHH--hhcCCCCCchHHHHHHHHHHCCCC
Confidence 999997 566799999999999999999987
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2.3e-35 Score=312.20 Aligned_cols=232 Identities=26% Similarity=0.308 Sum_probs=191.2
Q ss_pred hhhccCCCCCCCceEEEEEeCCCCC--HHHHHHHHHHhhcccccC------CCceEEEEEEeeCCCh--hHHHHHHHHHh
Q 006408 387 SKWKAEPLPARPVHLFIGVLSATNH--FAERMAIRKTWMQSSKIK------SSNVVARFFVALNPRK--EVNAVLKKEAA 456 (646)
Q Consensus 387 ~~~kapp~p~~~v~LlI~V~Sap~~--~~rR~aIR~TW~~~~~i~------~~~v~~~FfVG~~~~~--~~~~~L~~Eae 456 (646)
..|+. ++-.+++||+|..++ +.||+++|+||+++..+. .+.+.++||+|.+++. +++++|++|++
T Consensus 73 ~~w~~-----~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~ 147 (382)
T PTZ00210 73 AVWKA-----QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAA 147 (382)
T ss_pred HHhcc-----CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHH
Confidence 46665 456889999999999 999999999999998876 6788999999999876 99999999999
Q ss_pred hcCcEEEEee------------------cccccchhHHHHHHHhhhhhcC-CceEEEEecCCccccHHHHHHHHhhcCCC
Q 006408 457 FFGDIVILPF------------------MDRYELVVLKTIAICEFGVQNV-TAAYIMKCDDDTFIRVDAVLKEIEGIFPK 517 (646)
Q Consensus 457 ~ygDII~~df------------------~DsY~nLtlKtl~~l~wa~~~~-~akfvmKvDDDtfVnvd~Ll~~L~~~~~~ 517 (646)
.|+|||++|| .|+|.++++||+++|+|+.+.| +++||||+|||+|||+++++++|+..+.
T Consensus 148 ~~~DIVilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~pr- 226 (382)
T PTZ00210 148 RTHDIITLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPR- 226 (382)
T ss_pred HhCCEEEEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCC-
Confidence 9999999999 6666789999999999999866 8999999999999999999999977654
Q ss_pred cceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhcCCcc---------------CCCCC
Q 006408 518 RSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSL---------------RLFKM 582 (646)
Q Consensus 518 ~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l---------------~~f~~ 582 (646)
+.+|+|.+....+|.|+. +||||+|+||+||+|+|+.|++.....++ -.+..
T Consensus 227 r~LY~G~v~~~~~p~Rd~-------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ 293 (382)
T PTZ00210 227 HGLYMGRYNYYNRIWRRN-------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFY 293 (382)
T ss_pred CceEEEeeCCCCccccCC-------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCc
Confidence 669999999887787753 59999999999999999999986322233 23567
Q ss_pred ChHHHHHHHH-HcCCCCCcccc-------cCCCc--ccCCcCCceEEEecCCHHHHHHHHHHhcCC
Q 006408 583 EDVSMGMWVE-QFNSTMTVRYS-------HSWKF--CQYGCMEGYYTAHYQSPRQMICLWDKLSRG 638 (646)
Q Consensus 583 EDV~iGi~l~-~lgi~~pV~y~-------h~~r~--c~~~C~~~~it~H~~sP~~M~~lW~~l~~~ 638 (646)
||+++|.+++ +++.. ++-|+ |+.+. |...-..+.|++|...+++-..|-..+++.
T Consensus 294 EDiMvG~vLr~~~k~~-~l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~ 358 (382)
T PTZ00210 294 EDVMVGMILREKVVYR-NLISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEG 358 (382)
T ss_pred hHHHHHHHHHHhcCcC-ceeeeccccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCC
Confidence 9999999995 44443 44333 22211 111224688999999999999999998853
No 6
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-34 Score=285.83 Aligned_cols=241 Identities=28% Similarity=0.442 Sum_probs=202.6
Q ss_pred CCCceEEEEEeCCCCCHHHHHHHHHHhhcccc-----cCCCceEEEEEEee-CCChhHHHHHHHHHhhcCcEEEEe-ecc
Q 006408 396 ARPVHLFIGVLSATNHFAERMAIRKTWMQSSK-----IKSSNVVARFFVAL-NPRKEVNAVLKKEAAFFGDIVILP-FMD 468 (646)
Q Consensus 396 ~~~v~LlI~V~Sap~~~~rR~aIR~TW~~~~~-----i~~~~v~~~FfVG~-~~~~~~~~~L~~Eae~ygDII~~d-f~D 468 (646)
.+.+.++|+|.|+++...||+++|+|||.... -....|.++|++|. +...+...+|.+|.++|+|.+++| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 45789999999999999999999999998722 13578999999998 567888999999999999999999 999
Q ss_pred cccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccc-cccceeccccCC-C
Q 006408 469 RYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLR-TGKWAVTYEEWP-Q 546 (646)
Q Consensus 469 sY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R-~sKWyVs~eeyp-~ 546 (646)
.|.+|+.||+++|.++..+.+++|++|+|||+|||++.|...|........+|+|++..+..+.+ .+|||-|. |. .
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe--Wkfg 165 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE--WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh--hhcC
Confidence 99999999999999999999999999999999999999999999877667899999998877777 59999996 64 3
Q ss_pred CC--CCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCCCCcccccCCCcccCCc--CCceEEEec
Q 006408 547 EV--YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQYGC--MEGYYTAHY 622 (646)
Q Consensus 547 ~~--YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~~pV~y~h~~r~c~~~C--~~~~it~H~ 622 (646)
+. |.+|+.|++|+||+|++..|.-+ ..-++.+..|||.+|-|+..++ |+++|+.++|...| ....+.++.
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in--~~lL~~y~nEDVSlGaW~~gld----V~h~dd~rlC~~~~~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISIN--RQLLHKYANEDVSLGAWMIGLD----VEHVDDPRLCCSTPKALAGMVCAAS 239 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHh--HHHHHhhccCCcccceeeeeee----eeEecCCcccccchhhhccceeeee
Confidence 44 99999999999999999999875 3457788999999999998766 66889999987666 223333332
Q ss_pred C---------CHHHHHHHHHHhc-CCCCCCCC
Q 006408 623 Q---------SPRQMICLWDKLS-RGRAHCCN 644 (646)
Q Consensus 623 ~---------sP~~M~~lW~~l~-~~~~~Cc~ 644 (646)
. +..+|..++..=- ...+.||.
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~ 271 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCS 271 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCc
Confidence 2 3467777776544 35567775
No 7
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=8.6e-30 Score=236.52 Aligned_cols=127 Identities=34% Similarity=0.508 Sum_probs=117.2
Q ss_pred eEEEcCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEccccCCCCCCCC
Q 006408 157 RLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHRP 236 (646)
Q Consensus 157 ~~~~lP~GL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~~p 236 (646)
|...||+||.+|+.|+|.|+|...+. +|.|||+.+ .++++|||||||..+
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~-------------------~F~inl~~~------~~di~lH~n~rf~~~----- 50 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAK-------------------RFSINLLTG------GDDIALHFNPRFNEN----- 50 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCC-------------------EEEEEeecC------CCCEEEEEeccCCCC-----
Confidence 35689999999999999999998654 999999973 247999999999975
Q ss_pred EEEEecccCCcccceeecCCCCCCCCCCccccchhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCCCe
Q 006408 237 VIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGRL 316 (646)
Q Consensus 237 vIv~Nt~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~ 316 (646)
+||+||+.+|.||.|||+ ..|||.+|++
T Consensus 51 ~iV~Ns~~~g~Wg~Eer~----------------------------------------------------~~~Pf~~g~~ 78 (128)
T smart00276 51 KIVCNSKLNGSWGSEERE----------------------------------------------------GGFPFQPGQP 78 (128)
T ss_pred EEEEeCccCCccchheEc----------------------------------------------------CCCCCCCCCE
Confidence 999999999999999998 3799999999
Q ss_pred EEEEEEEccceEEEEeCCeEEEEeecccCcCcccceEEEEecccceeeeec
Q 006408 317 FILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 367 (646)
Q Consensus 317 F~lti~~g~egf~v~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a 367 (646)
|+|+|.++.++|+|+|||+|+++|+||. ++++|+.|.|.||++|++|..
T Consensus 79 F~l~i~~~~~~f~i~vng~~~~~f~~R~--~~~~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 79 FDLTIIVQPDHFQIFVNGVHITTFPHRL--PLESIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEEEEEEcCCEEEEEECCEeEEEecCCC--CcccEeEEEEeCCEEEEEEEE
Confidence 9999999999999999999999999999 689999999999999999964
No 8
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.96 E-value=2.2e-29 Score=234.13 Aligned_cols=132 Identities=37% Similarity=0.578 Sum_probs=119.9
Q ss_pred CeEEEcCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEccccCC-CCCC
Q 006408 156 DRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKG-DWSH 234 (646)
Q Consensus 156 ~~~~~lP~GL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~-d~~~ 234 (646)
||++.||+||.+|+.|+|.|++...+. +|.|||+++. ..+..+++|||||||.. .
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~-------------------~f~inl~~~~--~~~~~~i~lH~~~rf~~~~--- 56 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAK-------------------RFSINLQTGP--NDPDDDIALHFNPRFDEQN--- 56 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSS-------------------BEEEEEEES---STTTTEEEEEEEEECTTEE---
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCC-------------------EEEEEecCCC--cCCCCCEEEEEEEEeCCCc---
Confidence 689999999999999999999997654 9999999864 34567899999999999 5
Q ss_pred CCEEEEecccCCcccceeecCCCCCCCCCCccccchhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCC
Q 006408 235 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 314 (646)
Q Consensus 235 ~pvIv~Nt~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G 314 (646)
+||+||+.+|.||.|||+ ..|||.+|
T Consensus 57 --~iv~Ns~~~g~Wg~Ee~~----------------------------------------------------~~~pf~~g 82 (133)
T PF00337_consen 57 --VIVRNSRINGKWGQEERE----------------------------------------------------SPFPFQPG 82 (133)
T ss_dssp --EEEEEEEETTEE-SEEEE----------------------------------------------------SSTSSTTT
T ss_pred --eEEEeceECCEeccceee----------------------------------------------------eeeeecCC
Confidence 999999999999999996 48999999
Q ss_pred CeEEEEEEEccceEEEEeCCeEEEEeecccCcCcccceEEEEecccceeeeec
Q 006408 315 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYA 367 (646)
Q Consensus 315 ~~F~lti~~g~egf~v~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a 367 (646)
++|+|+|.+..++|+|+|||+|+++|+||+ ++++|+.|.|.|||+|++|.+
T Consensus 83 ~~F~i~I~~~~~~f~I~vng~~~~~F~~R~--~~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 83 QPFEIRIRVEEDGFKIYVNGKHFCSFPHRL--PLSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEEEE-SS--CGGGEEEEEEEESEEEEEEEE
T ss_pred ceEEEEEEEecCeeEEEECCeEEEEeeCcC--CHHHcCEEEEECCEEEEEEEC
Confidence 999999999999999999999999999998 679999999999999999963
No 9
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.96 E-value=2.8e-29 Score=232.53 Aligned_cols=127 Identities=36% Similarity=0.549 Sum_probs=117.3
Q ss_pred CeEEEcCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEccccCCCCCCC
Q 006408 156 DRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSHR 235 (646)
Q Consensus 156 ~~~~~lP~GL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~~ 235 (646)
++...|||||.+|+.|+|.|+|..++. +|.|||+.+ .+ +++|||||||..+
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~~-------------------~f~Inl~~~-----~~-~i~lH~n~rf~~~---- 51 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNAK-------------------RFSINLGTG-----SS-DIALHFNPRFDEN---- 51 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCCC-------------------EEEEEEecC-----CC-CEEEEEeeeCCCC----
Confidence 466789999999999999999998755 999999973 22 7999999999986
Q ss_pred CEEEEecccCCcccceeecCCCCCCCCCCccccchhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCCC
Q 006408 236 PVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEGR 315 (646)
Q Consensus 236 pvIv~Nt~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~ 315 (646)
+||+||+.+|.||.|||+ ..|||.+|+
T Consensus 52 -~IV~Ns~~~g~Wg~Eer~----------------------------------------------------~~~pf~~g~ 78 (127)
T cd00070 52 -VIVRNSFLNGNWGPEERS----------------------------------------------------GGFPFQPGQ 78 (127)
T ss_pred -EEEEcCCCCCEecHhhcc----------------------------------------------------CCCCCCCCC
Confidence 999999999999999999 379999999
Q ss_pred eEEEEEEEccceEEEEeCCeEEEEeecccCcCcccceEEEEecccceeeee
Q 006408 316 LFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVY 366 (646)
Q Consensus 316 ~F~lti~~g~egf~v~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~ 366 (646)
+|+|+|.++.++|+|+|||+|+++|+||. ++++|+.|.|.||+.|++|.
T Consensus 79 ~F~l~i~~~~~~f~i~vng~~~~~F~~R~--~~~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 79 PFELTILVEEDKFQIFVNGQHFFSFPHRL--PLESIDYLSINGDVSLTSVE 127 (127)
T ss_pred eEEEEEEEcCCEEEEEECCEeEEEecCcC--ChhhEEEEEEeCCEEEEEeC
Confidence 99999999999999999999999999999 67999999999999999873
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.92 E-value=8.9e-25 Score=207.13 Aligned_cols=137 Identities=31% Similarity=0.465 Sum_probs=119.9
Q ss_pred CCeEEEcCCCCCCCcEEEEEEEcCCCcccccchhhhccCCCCcceeeeEEEEecCCcCCCCCCCCeeEEEccccCCCCCC
Q 006408 155 GDRLMFLPCGLAAGSSITVVGTPHYAHQEFLPQLTRRRNGDSLVMVSQFMVELQGLKSVDGEDPPKILHLNPRIKGDWSH 234 (646)
Q Consensus 155 ~~~~~~lP~GL~~Gs~itV~G~p~~~~~~~~~~~~~~~~~~~~~~~~~F~i~L~g~~~~~~~~~~i~LH~NpRl~~d~~~ 234 (646)
.++...++++|.+|+.+++.|.+..+.. .+|.++++..-..+. +.+|+|||||||.+.
T Consensus 4 ~p~~~~~~~~l~~g~~~~~~g~~~~~~~------------------~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~--- 61 (143)
T KOG3587|consen 4 VPFPVPIPSGLPPGSQVTIKGLVLYGIP------------------KRFAVNLRFGTNLDS-DSDIALHFNPRFDEK--- 61 (143)
T ss_pred cccccccccCcCCCcEEEEEEEEcccCC------------------CcceeeeEeecccCC-CCcEEEEEeccCCCC---
Confidence 4677778999999999999999997643 256666655444334 567999999999998
Q ss_pred CCEEEEecccCCcccceeecCCCCCCCCCCccccchhhhhhccccCccccccccccccccccccccCCCCCCCCCCCCCC
Q 006408 235 RPVIEHNTCYRMQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSKDSKTASWFKRFIGREQKPEVTWPFPFVEG 314 (646)
Q Consensus 235 ~pvIv~Nt~~~~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G 314 (646)
.||+||+.+|.||.|||. ..+||+.|
T Consensus 62 --~VVrNs~~~g~Wg~eE~~----------------------------------------------------~~~PF~~g 87 (143)
T KOG3587|consen 62 --GVVRNSLINGEWGLEERE----------------------------------------------------GGNPFQPG 87 (143)
T ss_pred --eEEEecccCCccCchhhc----------------------------------------------------CCCCCCCC
Confidence 699999999999999998 47999999
Q ss_pred CeEEEEEEEccceEEEEeCCeEEEEeecccCcCcccceEEEEecccceeeeeccc
Q 006408 315 RLFILTLRAGVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATN 369 (646)
Q Consensus 315 ~~F~lti~~g~egf~v~VnG~h~~sF~yR~~~~l~~v~~l~v~GDv~l~sV~a~s 369 (646)
++|.|+|.++.+.|+|.|||.|+++|+||+ +++.+..|.|.||++|++|....
T Consensus 88 ~~F~l~I~~~~~~~~I~VNg~~f~~y~HR~--p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 88 QPFDLTILVEEDKFQIFVNGVHFADYPHRI--PPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred CeEEEEEEEccCeEEEEECCEEEEeecCCC--CChheeEEEEeeeEEEEEEEEEc
Confidence 999999999999999999999999999999 78999999999999999997653
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.74 E-value=4.2e-18 Score=175.66 Aligned_cols=183 Identities=17% Similarity=0.247 Sum_probs=99.4
Q ss_pred eEEEEEeCCCCCHHHH-HHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHH
Q 006408 400 HLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI 478 (646)
Q Consensus 400 ~LlI~V~Sap~~~~rR-~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl 478 (646)
+|+|+|+|++.+...| .+|++||++... ...|++....+..+... ...+++..+....+...+++.+
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~------~~~~ifsd~~d~~l~~~------~~~~l~~~~~~~~~~~~~~~~~ 74 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN------KQTFIFSDAEDPSLPTV------TGVHLVNPNCDAGHCRKTLSCK 74 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG------GGEEEEESS--HHHHHH------HGGGEEE-------------HH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC------CceEEecCccccccccc------cccccccCCCcchhhHHHHHHH
Confidence 6899999999877666 999999999876 22454443444443322 3346677777777766666666
Q ss_pred HHHhhhhh-cCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCcccc-ccceeccccCCCCCCCCCCCCC
Q 006408 479 AICEFGVQ-NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT-GKWAVTYEEWPQEVYPPYANGP 556 (646)
Q Consensus 479 ~~l~wa~~-~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~-sKWyVs~eeyp~~~YPpY~~G~ 556 (646)
+.++|... ..+++|++++||||||++++|+++|..+++.+++|+|...... |... .+. .........|....+|+
T Consensus 75 ~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~~~--~~~~~~~~~~~f~~GGa 151 (252)
T PF02434_consen 75 MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIHRF--NPNKSKDSGFWFATGGA 151 (252)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-------------------------EE-GGG
T ss_pred HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeeccc--cccccCcCceEeeCCCe
Confidence 66666433 3478999999999999999999999999999999999986432 2211 000 00001112232223689
Q ss_pred eEEeCHHHHHHHHHHhcCCcc-C----CCCCChHHHHHHHHH-cCCC
Q 006408 557 GYVISSDIAKFIVLQHGNQSL-R----LFKMEDVSMGMWVEQ-FNST 597 (646)
Q Consensus 557 GYVLSrdla~~Iv~~~~~~~l-~----~f~~EDV~iGi~l~~-lgi~ 597 (646)
||+||+.++++|......... . .-..||+.||.|++. +|+.
T Consensus 152 G~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~ 198 (252)
T PF02434_consen 152 GYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVP 198 (252)
T ss_dssp -EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---
T ss_pred eHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcc
Confidence 999999999999654322222 1 234799999999999 8976
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.62 E-value=2.3e-15 Score=162.58 Aligned_cols=165 Identities=20% Similarity=0.305 Sum_probs=127.2
Q ss_pred CCceEEEEEeCCCCCHHHH-HHHHHHhhcccccCCCceEEEEEE---eeCCChhHHHHHHHHHhhcCcEEEEeecccccc
Q 006408 397 RPVHLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFV---ALNPRKEVNAVLKKEAAFFGDIVILPFMDRYEL 472 (646)
Q Consensus 397 ~~v~LlI~V~Sap~~~~rR-~aIR~TW~~~~~i~~~~v~~~FfV---G~~~~~~~~~~L~~Eae~ygDII~~df~DsY~n 472 (646)
.+.+|++.|+|.+.+...| ..+-+||++.+. +..|+- ... ...+. .|..+..|+|++
T Consensus 89 r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~------------~~~f~-~v~~~~~~g~~~ 149 (364)
T KOG2246|consen 89 RSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKD------------DSRFP-TVYYNLPDGYRS 149 (364)
T ss_pred CCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCC------------CCcCc-eeeccCCcchHH
Confidence 5679999999998877766 799999999876 334443 221 11222 347888999999
Q ss_pred hhHHHHHHHhhhhhcC--CceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCCCCCC
Q 006408 473 VVLKTIAICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYP 550 (646)
Q Consensus 473 LtlKtl~~l~wa~~~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YP 550 (646)
+..||..+++|...+. +++|++|+|||||+.++||...|.++++.+++|+|+..... . ...
T Consensus 150 ~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~---------~------~~~-- 212 (364)
T KOG2246|consen 150 LWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSY---------F------QNG-- 212 (364)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccc---------c------ccc--
Confidence 9999999999998543 89999999999999999999999999999999999965311 1 111
Q ss_pred CCCCCCeEEeCHHHHHHHHHHhcCCc--cC-CC--CCChHHHHHHHHHcCCC
Q 006408 551 PYANGPGYVISSDIAKFIVLQHGNQS--LR-LF--KMEDVSMGMWVEQFNST 597 (646)
Q Consensus 551 pY~~G~GYVLSrdla~~Iv~~~~~~~--l~-~f--~~EDV~iGi~l~~lgi~ 597 (646)
.-.+|+||++|+.+.+.+++...... .+ -. ..||.-||.|++.+||.
T Consensus 213 y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~ 264 (364)
T KOG2246|consen 213 YSSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVP 264 (364)
T ss_pred cccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCC
Confidence 11279999999999999887532211 12 22 38999999999999986
No 13
>PLN03153 hypothetical protein; Provisional
Probab=99.10 E-value=9.8e-10 Score=121.85 Aligned_cols=173 Identities=14% Similarity=0.161 Sum_probs=105.0
Q ss_pred ceEEEEEeCCCCCHHHH-HHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeeccc----ccch
Q 006408 399 VHLFIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDR----YELV 473 (646)
Q Consensus 399 v~LlI~V~Sap~~~~rR-~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~Ds----Y~nL 473 (646)
-.|+++|.++.+...+| ..|+.+|..... + -.+|+.....+.. +... ---+.+. .|+ |.|-
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-r----g~v~ld~~~~~~~-------~~~~-~P~i~is-~d~s~f~y~~~ 187 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM-R----GHVWLEEQVSPEE-------GDDS-LPPIMVS-EDTSRFRYTNP 187 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc-e----eEEEecccCCCCC-------CcCC-CCCEEeC-CCcccccccCC
Confidence 36788998888876554 888888876432 1 1233332221100 0000 0011111 111 3321
Q ss_pred -----hHHHHHHHhhhhh--cCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCC
Q 006408 474 -----VLKTIAICEFGVQ--NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQ 546 (646)
Q Consensus 474 -----tlKtl~~l~wa~~--~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~ 546 (646)
.+-...+...+.+ .++++|++++|||||+.+++|+..|..+++.++.|+|.......... . +.
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~--~-------f~- 257 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANS--Y-------FS- 257 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccccccc--c-------cc-
Confidence 1112123333333 46999999999999999999999999999999999998754321100 0 00
Q ss_pred CCCCCCCCCCeEEeCHHHHHHHHHHhcCCcc--CCCCCChHHHHHHHHHcCCC
Q 006408 547 EVYPPYANGPGYVISSDIAKFIVLQHGNQSL--RLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 547 ~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l--~~f~~EDV~iGi~l~~lgi~ 597 (646)
|--.-+|+||+||+.+++.|......... +...-+|..+|.|+.++|+.
T Consensus 258 --~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~ 308 (537)
T PLN03153 258 --HNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVP 308 (537)
T ss_pred --cccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCC
Confidence 11123899999999999998876322211 12346999999999999975
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00018 Score=79.74 Aligned_cols=195 Identities=18% Similarity=0.196 Sum_probs=123.2
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHH-
Q 006408 400 HLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTI- 478 (646)
Q Consensus 400 ~LlI~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl- 478 (646)
+|+++|+|. ..---+|.+|=+.+-. ++.||.+...-. .|.-++..+-.|+.-..|+.
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvp------rv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~~s 84 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVP------RVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKTHS 84 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcc------eeEEeecccccc-------------ccHhhccccCccccCccccHH
Confidence 667888872 2556788888776544 567888754311 12222333333333333443
Q ss_pred HHHhhhhhcC--CceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCC
Q 006408 479 AICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGP 556 (646)
Q Consensus 479 ~~l~wa~~~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~ 556 (646)
+.+.+..++. +++|++-+-|+|||+...|+..+..++...++|+|.-... .... .-.+.
T Consensus 85 ~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~----------------gs~r---C~l~~ 145 (681)
T KOG3708|consen 85 MVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED----------------GSGR---CRLDT 145 (681)
T ss_pred HHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC----------------ccCc---ccccc
Confidence 4455665544 8999999999999999999999999998899999942210 0111 22589
Q ss_pred eEEeCHHHHHHHHHHhcCCccCCC--CCChHHHHHHHHHc-CCC-CC----c-ccccC---C----Cccc---CCcCCce
Q 006408 557 GYVISSDIAKFIVLQHGNQSLRLF--KMEDVSMGMWVEQF-NST-MT----V-RYSHS---W----KFCQ---YGCMEGY 617 (646)
Q Consensus 557 GYVLSrdla~~Iv~~~~~~~l~~f--~~EDV~iGi~l~~l-gi~-~p----V-~y~h~---~----r~c~---~~C~~~~ 617 (646)
||+||+.++.+|-.+- ..+.... .=.|+.+|.|+... |+. .+ + +|.+- . ++-. ..-..+.
T Consensus 146 G~LLS~s~l~~lrnnl-e~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~aFr~A 224 (681)
T KOG3708|consen 146 GMLLSQSLLHALRNNL-EGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPAFRSA 224 (681)
T ss_pred ceeecHHHHHHHHhhH-HHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChHHhhh
Confidence 9999999999998763 3333332 34789999999853 443 11 1 11110 0 0110 0112467
Q ss_pred EEEe-cCCHHHHHHHHHHhc
Q 006408 618 YTAH-YQSPRQMICLWDKLS 636 (646)
Q Consensus 618 it~H-~~sP~~M~~lW~~l~ 636 (646)
+++| -++|.+|+.|.+.+.
T Consensus 225 ~tv~pv~~p~d~yrLH~yfs 244 (681)
T KOG3708|consen 225 LTVHPVLSPADMYRLHKYFS 244 (681)
T ss_pred hccCccCCHHHHHHHHHHHH
Confidence 8999 558999999988764
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.29 E-value=0.22 Score=49.19 Aligned_cols=184 Identities=12% Similarity=0.090 Sum_probs=86.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcE--EEEeecccccchhHHHH
Q 006408 401 LFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDI--VILPFMDRYELVVLKTI 478 (646)
Q Consensus 401 LlI~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDI--I~~df~DsY~nLtlKtl 478 (646)
|.|+|.+.-....-++.|+.--.+.. .++.++++.. ..+.++.+.+.+-...|..+ ..+.-.... ....|.-
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~----~~~~v~vvd~-~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~-g~~~k~~ 76 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDY----PRLEVVVVDD-GSDDETAEILRALAARYPRVRVRVIRRPRNP-GPGGKAR 76 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHH----HTEEEEEEEE--SSS-GCTTHHHHHHTTGG-GEEEEE----H-HHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCC----CCeEEEEEEC-CCChHHHHHHHHHHHHcCCCceEEeecCCCC-CcchHHH
Confidence 45555554443444556655544321 2344444443 33333333444444555543 333322111 1122333
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhc-CCCcceEEEeeccCCCc--cc-ccc-----ceeccccCCCCCC
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI-FPKRSLYMGNLNLLHRP--LR-TGK-----WAVTYEEWPQEVY 549 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~-~~~~~lY~G~v~~~~~P--~R-~sK-----WyVs~eeyp~~~Y 549 (646)
.+.++.+....+||+.+|||+.+..+.|...+..+ .+.-.+..|.+...... .. -.. |+....... ..+
T Consensus 77 -a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (228)
T PF13641_consen 77 -ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGR-RAL 154 (228)
T ss_dssp -HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT--B--
T ss_pred -HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhh-ccc
Confidence 44666666789999999999999988888877776 34334444555332110 00 011 111100111 111
Q ss_pred C-CCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 550 P-PYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 550 P-pY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
. .++.|++.++.+++++.+..- .. ....||..++..+.+.|..
T Consensus 155 ~~~~~~G~~~~~rr~~~~~~g~f--d~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSALEEVGGF--DP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp --S-B--TEEEEEHHHHHHH-S----S---SSSSHHHHHHHHHHHTT--
T ss_pred ceeeccCcEEEEEHHHHHHhCCC--CC---CCcccHHHHHHHHHHCCCc
Confidence 1 446799999999999999642 11 4445999999999998865
No 16
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.52 E-value=1.3 Score=48.44 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=86.8
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcCc--EEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHH
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFGD--IVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLK 509 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~ygD--II~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~ 509 (646)
+..++|+...+.+... +.+++=.+.|.+ |..+.-.. -.....|.-+..+ +.+..+.+|++.+|+|+.+..+.|..
T Consensus 70 ~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~~~~-~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~ 146 (373)
T TIGR03472 70 GFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVIDAR-RHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQ 146 (373)
T ss_pred CeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEECCC-CCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHH
Confidence 3566665554444322 333332345655 43332111 1222335544433 45567899999999999999998888
Q ss_pred HHhhcCC-CcceEEEeeccCCCcccc--c---cceeccccCCC------CCCCCCCCCCeEEeCHHHHHHHHHHhcCCcc
Q 006408 510 EIEGIFP-KRSLYMGNLNLLHRPLRT--G---KWAVTYEEWPQ------EVYPPYANGPGYVISSDIAKFIVLQHGNQSL 577 (646)
Q Consensus 510 ~L~~~~~-~~~lY~G~v~~~~~P~R~--s---KWyVs~eeyp~------~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l 577 (646)
.+..+.. .-.+..|... ..+..+ . ...+....+|. ..-+.+|.|+++++.+++.+.+--- ...
T Consensus 147 lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf---~~~ 221 (373)
T TIGR03472 147 VVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMVARALGRARFCFGATMALRRATLEAIGGL---AAL 221 (373)
T ss_pred HHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHHHHhccCCccccChhhheeHHHHHHcCCh---HHh
Confidence 8777643 2233333211 111111 0 01111111110 0113468899999999999998642 111
Q ss_pred CCCCCChHHHHHHHHHcCCC
Q 006408 578 RLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 578 ~~f~~EDV~iGi~l~~lgi~ 597 (646)
...-.||..+|.-+.+.|.+
T Consensus 222 ~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 222 AHHLADDYWLGELVRALGLR 241 (373)
T ss_pred cccchHHHHHHHHHHHcCCe
Confidence 22336999999999998866
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.95 E-value=0.63 Score=45.38 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=79.3
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcC--cEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHH
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFG--DIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLK 509 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~yg--DII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~ 509 (646)
.+.++++...+.+.. .+.+++-.+.|. ++.++...... ....|.- .+..+.+....+|++.+|+|+.+..+.|..
T Consensus 30 ~~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHHHH
Confidence 355666665554432 334444444554 33233221111 1123432 234555667899999999999998888877
Q ss_pred HHhhcCC-CcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHH
Q 006408 510 EIEGIFP-KRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMG 588 (646)
Q Consensus 510 ~L~~~~~-~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iG 588 (646)
.+..+.. .-.+..|. ++.|++.++.+++.+.+--- ........||..++
T Consensus 107 l~~~~~~~~~~~v~~~---------------------------~~~g~~~~~r~~~~~~~ggf---~~~~~~~~eD~~l~ 156 (196)
T cd02520 107 MVAPLMDPGVGLVTCL---------------------------CAFGKSMALRREVLDAIGGF---EAFADYLAEDYFLG 156 (196)
T ss_pred HHHHhhCCCCCeEEee---------------------------cccCceeeeEHHHHHhccCh---HHHhHHHHHHHHHH
Confidence 7766422 22222221 56899999999999987532 11122346999999
Q ss_pred HHHHHcCCC
Q 006408 589 MWVEQFNST 597 (646)
Q Consensus 589 i~l~~lgi~ 597 (646)
+-+.+.|..
T Consensus 157 ~rl~~~G~~ 165 (196)
T cd02520 157 KLIWRLGYR 165 (196)
T ss_pred HHHHHcCCe
Confidence 999888855
No 18
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=93.81 E-value=0.96 Score=44.53 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=53.6
Q ss_pred EEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEE-----eecccccchhHHH
Q 006408 403 IGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVIL-----PFMDRYELVVLKT 477 (646)
Q Consensus 403 I~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~-----df~DsY~nLtlKt 477 (646)
|.|.|-++..+||..+.+..... ++...||=|..........+... |..-... ++.-.----.+-.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~~~~---~~~~~~~~~~~~~lt~gEiGC~lSH 74 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDELFRR---YDPELFKKRYGRPLTPGEIGCALSH 74 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHHHHH---hhhhhhhccccccCCcceEeehhhH
Confidence 56788899999999998865543 34567777655432211111111 1100000 0011111113445
Q ss_pred HHHHhhhhhcCCceEEEEecCCccccHHHHHHHHh
Q 006408 478 IAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 512 (646)
Q Consensus 478 l~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 512 (646)
+.+++-+++ -+.+|++-..||+.+..+ +.+.|.
T Consensus 75 ~~~w~~~v~-~~~~~~lIlEDDv~~~~~-f~~~l~ 107 (200)
T PF01755_consen 75 IKAWQRIVD-SGLEYALILEDDVIFDPD-FKEFLE 107 (200)
T ss_pred HHHHHHHHH-cCCCeEEEEecccccccc-HHHHHH
Confidence 556665553 257999999999999865 334333
No 19
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.06 E-value=7.5 Score=37.29 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=79.7
Q ss_pred eEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHh
Q 006408 433 VVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 512 (646)
Q Consensus 433 v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 512 (646)
+.++++-..+.+..+...+......+.-+.+..... -... -.++.++.+....+|++..|+|..+..+.|...++
T Consensus 32 ~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~-~~g~----~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~ 106 (202)
T cd04184 32 WELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREE-NGGI----SAATNSALELATGEFVALLDHDDELAPHALYEVVK 106 (202)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEccc-CCCH----HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHH
Confidence 445444444445444444443334444343332221 1111 23455555566789999999999999988888887
Q ss_pred hc-C-CCcceEEEeeccCCC-ccccccceeccccCCCCC-CCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHH
Q 006408 513 GI-F-PKRSLYMGNLNLLHR-PLRTGKWAVTYEEWPQEV-YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMG 588 (646)
Q Consensus 513 ~~-~-~~~~lY~G~v~~~~~-P~R~sKWyVs~eeyp~~~-YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iG 588 (646)
.+ . +.-.++++....... ......++. ..|.... +..-+.|.+-++++++++.+.-- .. .+...||..++
T Consensus 107 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~iggf--~~--~~~~~eD~~l~ 180 (202)
T cd04184 107 ALNEHPDADLIYSDEDKIDEGGKRSEPFFK--PDWSPDLLLSQNYIGHLLVYRRSLVRQVGGF--RE--GFEGAQDYDLV 180 (202)
T ss_pred HHHhCCCCCEEEccHHhccCCCCEeccccC--CCCCHHHhhhcCCccceEeEEHHHHHHhCCC--Cc--CcccchhHHHH
Confidence 65 2 223444443322110 000001111 1111111 11122455668899998887531 11 23457999999
Q ss_pred HHHHHcCCC
Q 006408 589 MWVEQFNST 597 (646)
Q Consensus 589 i~l~~lgi~ 597 (646)
+-+.+.|.+
T Consensus 181 ~rl~~~g~~ 189 (202)
T cd04184 181 LRVSEHTDR 189 (202)
T ss_pred HHHHhccce
Confidence 888887755
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.46 E-value=2.4 Score=40.88 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=86.9
Q ss_pred HHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcC-cEEEEeecccccchhHHHHHHHhhhhhcCCceEEE
Q 006408 416 MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFG-DIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIM 494 (646)
Q Consensus 416 ~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~yg-DII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvm 494 (646)
..|.+++-+-.......+.++++-..+++. +...+++-...+. .+.......+.- . ...+..+......+|++
T Consensus 11 ~~l~~~l~sl~~q~~~~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~G-~----~~~~n~g~~~~~g~~v~ 84 (214)
T cd04196 11 KYLREQLDSILAQTYKNDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNLG-V----ARNFESLLQAADGDYVF 84 (214)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCcc-H----HHHHHHHHHhCCCCEEE
Confidence 344555443322111245555554444433 3333444344443 333333333222 1 12333345567899999
Q ss_pred EecCCccccHHHHHHHHhh-cC-CCcceEEEeecc---CCCccccccceecc----ccCCCCCCCCCCCCCeEEeCHHHH
Q 006408 495 KCDDDTFIRVDAVLKEIEG-IF-PKRSLYMGNLNL---LHRPLRTGKWAVTY----EEWPQEVYPPYANGPGYVISSDIA 565 (646)
Q Consensus 495 KvDDDtfVnvd~Ll~~L~~-~~-~~~~lY~G~v~~---~~~P~R~sKWyVs~----eeyp~~~YPpY~~G~GYVLSrdla 565 (646)
..|+|.++..+.|...++. .. +...++.|.... .........+.... ..+.......++.|+++++.++++
T Consensus 85 ~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 164 (214)
T cd04196 85 FCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELL 164 (214)
T ss_pred EECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHH
Confidence 9999999988888888776 22 223344454321 11111111110000 011111223566899999999999
Q ss_pred HHHHHHhcCCccCCCCCChHHHHHHHHHcC
Q 006408 566 KFIVLQHGNQSLRLFKMEDVSMGMWVEQFN 595 (646)
Q Consensus 566 ~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lg 595 (646)
+.+..- .. .....||.++.+.+...+
T Consensus 165 ~~~~~~--~~--~~~~~~D~~~~~~~~~~~ 190 (214)
T cd04196 165 ELALPF--PD--ADVIMHDWWLALLASAFG 190 (214)
T ss_pred Hhhccc--cc--cccccchHHHHHHHHHcC
Confidence 998652 11 115689998887777644
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.84 E-value=6.5 Score=38.29 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=74.5
Q ss_pred CcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcC-CCcceEEEeeccCCCcc----c
Q 006408 459 GDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPL----R 533 (646)
Q Consensus 459 gDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~P~----R 533 (646)
..+..++.... .+. .|. ..+.++.+....+|++.+|+|+.+..+.|...+..+. .....+.|..... .+. +
T Consensus 55 ~~v~~~~~~~~-~~~-g~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~ 130 (229)
T cd04192 55 FQLKILNNSRV-SIS-GKK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF-KGKSLLAK 130 (229)
T ss_pred cceEEeeccCc-ccc-hhH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec-CCccHHHH
Confidence 34555554431 222 233 2346666677899999999999999887777776443 2334555554332 110 0
Q ss_pred --cccceecc---ccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCC
Q 006408 534 --TGKWAVTY---EEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNS 596 (646)
Q Consensus 534 --~sKWyVs~---eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi 596 (646)
.-.+.... ..+....++..+.|+++++++++.+.+--- ........||..++.-+...+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf---~~~~~~~~eD~~~~~~~~~~g~ 195 (229)
T cd04192 131 FQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGF---EGNDHIASGDDELLLAKVASKY 195 (229)
T ss_pred HHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCC---ccccccccCCHHHHHHHHHhCC
Confidence 00010000 011223456677899999999999998541 1112345688887776665554
No 22
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.52 E-value=6.1 Score=36.10 Aligned_cols=83 Identities=12% Similarity=0.209 Sum_probs=56.9
Q ss_pred hhcCCceEEEEecCCccccHHHHHHHHhhcCCC-cceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCeEEeCHH
Q 006408 485 VQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSD 563 (646)
Q Consensus 485 ~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~GYVLSrd 563 (646)
.+....+|++.+|||.++..+.+...++.+... .-..++.. +.|++.+++++
T Consensus 70 ~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~ 122 (166)
T cd04186 70 IREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK---------------------------VSGAFLLVRRE 122 (166)
T ss_pred HhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc---------------------------CceeeEeeeHH
Confidence 344489999999999999988888777754322 21222221 58999999999
Q ss_pred HHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 564 IAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 564 la~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
+++.+..- .... ....||..+.+-+...|.+
T Consensus 123 ~~~~~~~~--~~~~-~~~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 123 VFEEVGGF--DEDF-FLYYEDVDLCLRARLAGYR 153 (166)
T ss_pred HHHHcCCC--Chhh-hccccHHHHHHHHHHcCCe
Confidence 99987421 1111 1266999998888877754
No 23
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=91.28 E-value=2 Score=40.87 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=73.3
Q ss_pred eEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHh
Q 006408 433 VVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 512 (646)
Q Consensus 433 v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 512 (646)
+.++.+-..+.+. ....++....++..+..+....++. |. .++..+.+....+|++.+|+|.....+.|...++
T Consensus 30 ~eiivvdd~s~d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 30 YEIIFVDDGSTDR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred eEEEEEeCCCCcc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4444444434333 2233444444566666655443332 22 3344455556679999999999998887777777
Q ss_pred hcCCCcceEEEeeccCCCcc-cc--ccceeccccCCCCCCCCCCCCCeEEeCHHHHHHHHH
Q 006408 513 GIFPKRSLYMGNLNLLHRPL-RT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVL 570 (646)
Q Consensus 513 ~~~~~~~lY~G~v~~~~~P~-R~--sKWyVs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~ 570 (646)
.......+.+|.......+. +. ++.+...........-+...|+.+++++.+++.+..
T Consensus 104 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 104 KWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 65554566667655332111 10 111111011111223345678889999999999875
No 24
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.62 E-value=12 Score=39.11 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=67.7
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCC-cceEEEeeccC---------CCc-ccc-------ccceecc
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLL---------HRP-LRT-------GKWAVTY 541 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~---------~~P-~R~-------sKWyVs~ 541 (646)
+...+.+....+||+.+|+|+.+..+-|-.++..+... ..+..+.+... ..+ .+. ..|....
T Consensus 74 a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 74 ARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 45555556678999999999999877777776654321 22333322110 000 010 0111110
Q ss_pred cc-----CC-CCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 542 EE-----WP-QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 542 ee-----yp-~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.. .+ ....-+++.|+++++++++...+--- ...+.....||+-+..=+.+.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgf--De~~~~~~~ED~Dl~~R~~~~G~~ 213 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGY--DEGMDIWGGENLELSFKVWQCGGS 213 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCC--CCcccccCchhHHHHHHHHHcCCe
Confidence 00 01 12334677899999999999998531 223333346999998888888865
No 25
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=90.32 E-value=3.4 Score=37.34 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=51.6
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCC--CcceEEEeeccCCC---cccc------ccceeccccC-CC
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP--KRSLYMGNLNLLHR---PLRT------GKWAVTYEEW-PQ 546 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~--~~~lY~G~v~~~~~---P~R~------sKWyVs~eey-p~ 546 (646)
..+.++.+..+.+|++.+|+|.++..+.|...+..... .-.++.|....... .... ..+......+ ..
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 34455556668999999999999987776666454322 22233344332111 1110 0011110000 12
Q ss_pred CCCCCCCCCCeEEeCHHHHHHHHH
Q 006408 547 EVYPPYANGPGYVISSDIAKFIVL 570 (646)
Q Consensus 547 ~~YPpY~~G~GYVLSrdla~~Iv~ 570 (646)
..+..++.|.+++++++++..+-.
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~gg 171 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVGG 171 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhCC
Confidence 234567789999999999988753
No 26
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.12 E-value=7.3 Score=42.85 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=84.1
Q ss_pred EEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcC-
Q 006408 437 FFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF- 515 (646)
Q Consensus 437 FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~- 515 (646)
+++....+++..+.+++..+.+..+..+...+ |.. |. ..+..+.+..+.+|++..|+|+.+..+.|...++...
T Consensus 87 iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 87 IAINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred EEEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 34444334444555555566676666655333 222 43 3456666667899999999999999998888887662
Q ss_pred -CCcceEEEeeccCCCcccc-ccceec--cccCC---------CC--CCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCC
Q 006408 516 -PKRSLYMGNLNLLHRPLRT-GKWAVT--YEEWP---------QE--VYPPYANGPGYVISSDIAKFIVLQHGNQSLRLF 580 (646)
Q Consensus 516 -~~~~lY~G~v~~~~~P~R~-sKWyVs--~eeyp---------~~--~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f 580 (646)
+.-....|.... ++ ..|.-. ..+|. .. ..+..++|++.++.+++++.+--- .. ..
T Consensus 162 ~~~v~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~--~~---~~ 231 (420)
T PRK11204 162 NPRVGAVTGNPRI-----RNRSTLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYW--ST---DM 231 (420)
T ss_pred CCCeEEEECCcee-----ccchhHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCC--CC---Cc
Confidence 222233332211 11 000000 00010 00 112245799999999999887431 11 13
Q ss_pred CCChHHHHHHHHHcCCC
Q 006408 581 KMEDVSMGMWVEQFNST 597 (646)
Q Consensus 581 ~~EDV~iGi~l~~lgi~ 597 (646)
-.||+.++.-+.+.|..
T Consensus 232 ~~ED~~l~~rl~~~G~~ 248 (420)
T PRK11204 232 ITEDIDISWKLQLRGWD 248 (420)
T ss_pred ccchHHHHHHHHHcCCe
Confidence 46999999999988865
No 27
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.01 E-value=7.3 Score=36.75 Aligned_cols=115 Identities=11% Similarity=0.014 Sum_probs=69.5
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhc--CCCcceEEEeeccCCCccc-cccceeccccCCCCCCCCCCCC
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLNLLHRPLR-TGKWAVTYEEWPQEVYPPYANG 555 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~~~~~P~R-~sKWyVs~eeyp~~~YPpY~~G 555 (646)
..+..+.+....+|++.+|+|.++..+.+...+... .+...+..|.......... ...+.........-....++.+
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICH 144 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccC
Confidence 345556666789999999999999988888877433 2334456666532111111 1111111111122234456788
Q ss_pred CeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 556 PGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 556 ~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
++.++++++.+.+.. + .. .+...||..+..-+.+.|..
T Consensus 145 ~~~~~~~~~~~~~~~-f-~~--~~~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 145 QATFFRRSLFEKYGG-F-DE--SYRIAADYDLLLRLLLAGKI 182 (202)
T ss_pred cceEEEHHHHHHhCC-C-ch--hhCchhhHHHHHHHHHcCCc
Confidence 899999999998853 1 11 23346899888888877754
No 28
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=89.93 E-value=1.6 Score=42.89 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=67.0
Q ss_pred HhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCC-Cc-ceEEEeecc-CCCc----ccc----ccceeccccCC-CCC
Q 006408 481 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KR-SLYMGNLNL-LHRP----LRT----GKWAVTYEEWP-QEV 548 (646)
Q Consensus 481 l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~-~lY~G~v~~-~~~P----~R~----sKWyVs~eeyp-~~~ 548 (646)
+..+.+....+|++.+|+|+++..+.|...+..... .+ .+..|.... .... .+. ...+....... ...
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRW 155 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555558999999999999999988888876643 22 222232211 1111 110 01111100001 012
Q ss_pred CCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 549 YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 549 YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
...++.|++.++++++++.+..- . .....||..++.-+.+.|..
T Consensus 156 ~~~~~~g~~~~~r~~~~~~ig~~--~---~~~~~eD~~l~~r~~~~g~~ 199 (234)
T cd06421 156 GAAFCCGSGAVVRREALDEIGGF--P---TDSVTEDLATSLRLHAKGWR 199 (234)
T ss_pred CCceecCceeeEeHHHHHHhCCC--C---ccceeccHHHHHHHHHcCce
Confidence 24567899999999999987541 1 12347999999999988865
No 29
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.77 E-value=3 Score=37.75 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=76.7
Q ss_pred EEEEeCCCCCHHHH-HHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHH
Q 006408 402 FIGVLSATNHFAER-MAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAI 480 (646)
Q Consensus 402 lI~V~Sap~~~~rR-~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~ 480 (646)
+|.+.-.+....+- ..+++. . .....+.+ +-...+.+..+.+.+-.+....+..+...++. .+ -..
T Consensus 3 vip~~n~~~~l~~~l~sl~~q--~-----~~~~eiiv-vdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~----~~~ 69 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIV-VDDGSTDETEEILEEYAESDPNIRYIRNPENL-GF----SAA 69 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEE-EECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HH----HHH
T ss_pred EEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEE-eccccccccccccccccccccccccccccccc-cc----ccc
Confidence 34444444444443 556665 1 12233433 33333444444555444445666666665543 22 233
Q ss_pred HhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCC-CcceEEEeeccCCCcccc-----c--cceec---cccCCCCCC
Q 006408 481 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYMGNLNLLHRPLRT-----G--KWAVT---YEEWPQEVY 549 (646)
Q Consensus 481 l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~G~v~~~~~P~R~-----s--KWyVs---~eeyp~~~Y 549 (646)
+..+.+....+|++.+|||.++..+.|..+++.+.. ...+.+|.........+. . .|... ........-
T Consensus 70 ~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 70 RNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred ccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 444555556779999999999998766666655432 233455554422111110 0 01000 011112334
Q ss_pred CCCCCCCeEEeCHHHHHHH
Q 006408 550 PPYANGPGYVISSDIAKFI 568 (646)
Q Consensus 550 PpY~~G~GYVLSrdla~~I 568 (646)
-+++.|++.++++++.+++
T Consensus 150 ~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp SSEESSSCEEEEEHHHHHC
T ss_pred cccccccEEEEEHHHHHhh
Confidence 4677899999999998875
No 30
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=89.62 E-value=0.42 Score=46.96 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=72.1
Q ss_pred HHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCC-CcceEEEeeccCCCcccc-----ccceec--cccCCCC
Q 006408 476 KTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYMGNLNLLHRPLRT-----GKWAVT--YEEWPQE 547 (646)
Q Consensus 476 Ktl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~G~v~~~~~P~R~-----sKWyVs--~eeyp~~ 547 (646)
|.-.+..-.....++++++..|+|+.|..+.|.+.+..+.. .-.+.-|.. . ..|.++ ..-++. ...+..-
T Consensus 18 Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~a~ 95 (175)
T PF13506_consen 18 KVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLP-R-GVPARGFWSRLEAAFFNFLPGVLQAL 95 (175)
T ss_pred HHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecc-c-ccCCcCHHHHHHHHHHhHHHHHHHHh
Confidence 44444332222368999999999999999999888877643 333332221 1 122222 111110 0000011
Q ss_pred CCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 548 VYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 548 ~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.-.++|.|+.+++.+++++.+--- ..+.-.-.||..+|..+.+.|.+
T Consensus 96 ~~~~~~~G~~m~~rr~~L~~~GG~---~~l~~~ladD~~l~~~~~~~G~~ 142 (175)
T PF13506_consen 96 GGAPFAWGGSMAFRREALEEIGGF---EALADYLADDYALGRRLRARGYR 142 (175)
T ss_pred cCCCceecceeeeEHHHHHHcccH---HHHhhhhhHHHHHHHHHHHCCCe
Confidence 246789999999999999987321 12233568999999999999976
No 31
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=89.26 E-value=7.2 Score=36.73 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=62.8
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCeEE
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYV 559 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~GYV 559 (646)
.+..+.+....+|++..|+|..+..+-|...++...+ .....|......... -.....|++++
T Consensus 70 ~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~~~~~~~----------------~~~~~~~~~~~ 132 (182)
T cd06420 70 IRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRVLLNEKL----------------TERGIRGCNMS 132 (182)
T ss_pred HHHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEecceeeccccc----------------ceeEeccceEE
Confidence 3455556668999999999999998888777776643 223334322111100 01344688888
Q ss_pred eCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 560 ISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 560 LSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
+.+..+..+..- .........||+.++.-+.+.|+.
T Consensus 133 ~~r~~~~~~ggf--~~~~~~~~~eD~~l~~r~~~~g~~ 168 (182)
T cd06420 133 FWKKDLLAVNGF--DEEFTGWGGEDSELVARLLNSGIK 168 (182)
T ss_pred EEHHHHHHhCCC--CcccccCCcchHHHHHHHHHcCCc
Confidence 888888765431 222222347999999999988844
No 32
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=89.26 E-value=10 Score=37.90 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=89.0
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHH
Q 006408 400 HLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIA 479 (646)
Q Consensus 400 ~LlI~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~ 479 (646)
.+-|+|.+--....-...|+.-..|... .....++++...+.+ .....+.+-.+. .+.++...++. . |. .
T Consensus 30 ~isVvip~~n~~~~l~~~l~si~~q~~~--~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~~~---g-~~-~ 99 (251)
T cd06439 30 TVTIIIPAYNEEAVIEAKLENLLALDYP--RDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPERR---G-KA-A 99 (251)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHhCcCC--CCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCCCC---C-hH-H
Confidence 4555555443332234555555554321 112344444333333 233333322222 34444332221 1 32 3
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCC-CcceEEEeeccCCCc--ccccc--ceecc--ccCC-CCCCCC
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP-KRSLYMGNLNLLHRP--LRTGK--WAVTY--EEWP-QEVYPP 551 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~-~~~lY~G~v~~~~~P--~R~sK--WyVs~--eeyp-~~~YPp 551 (646)
.+..+.+....+|++.+|+|+++..+-|.+.+..+.. .-.+..|........ .+... |.... ..+. ....+.
T Consensus 100 a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 100 ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 3455555566799999999999997777777777643 234445554432111 01111 10000 0000 112234
Q ss_pred CCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 552 YANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 552 Y~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.+.|+++.+.+++.. .. . .....||..++..+.+.|..
T Consensus 180 ~~~g~~~~~rr~~~~----~~-~---~~~~~eD~~l~~~~~~~G~~ 217 (251)
T cd06439 180 GANGAIYAIRRELFR----PL-P---ADTINDDFVLPLRIARQGYR 217 (251)
T ss_pred eecchHHHhHHHHhc----CC-C---cccchhHHHHHHHHHHcCCe
Confidence 567888878877766 11 1 12346999999999888854
No 33
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=89.18 E-value=23 Score=34.82 Aligned_cols=155 Identities=10% Similarity=0.072 Sum_probs=81.2
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHH
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 511 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L 511 (646)
+..++++-..+. .++...++...+.+..+..+.-... . +. .++..+.+....+|++.+|+|..+..+.|...+
T Consensus 31 ~~evivvd~~s~-d~~~~~~~~~~~~~~~v~~i~~~~~----~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGST-DGTREIVQEYAAKDPRIRLIDNPKR----I-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCC-ccHHHHHHHHHhcCCeEEEEeCCCC----C-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHHH
Confidence 344444444333 3334444444444444444432211 1 11 346666666689999999999999887777777
Q ss_pred hhcCC-CcceEEEeeccC-CCccc-c------ccceeccccCCC--CCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCC
Q 006408 512 EGIFP-KRSLYMGNLNLL-HRPLR-T------GKWAVTYEEWPQ--EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLF 580 (646)
Q Consensus 512 ~~~~~-~~~lY~G~v~~~-~~P~R-~------sKWyVs~eeyp~--~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f 580 (646)
..... ...+..|..... ..+.. . ..+......+.. ...-.++.|++.++++++.+.+.-- .. .+.
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~--~~~ 179 (249)
T cd02525 104 EALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGF--DE--SLV 179 (249)
T ss_pred HHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCC--Cc--ccC
Confidence 55432 223444443221 11110 0 000000000111 1001255788889999998887431 11 234
Q ss_pred CCChHHHHHHHHHcCCC
Q 006408 581 KMEDVSMGMWVEQFNST 597 (646)
Q Consensus 581 ~~EDV~iGi~l~~lgi~ 597 (646)
..||..++.-+.+.|..
T Consensus 180 ~~eD~~l~~r~~~~G~~ 196 (249)
T cd02525 180 RNEDAELNYRLRKAGYK 196 (249)
T ss_pred ccchhHHHHHHHHcCcE
Confidence 57999999888888855
No 34
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.18 E-value=7 Score=37.74 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=59.7
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcC-CCcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCe
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPG 557 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~G 557 (646)
.+++++. ....+|++..|+|..+..+.|...++... +.-.++.|...... + .+.|
T Consensus 70 ~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-----~------------------~~~~ 125 (202)
T cd04185 70 EGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPD-----G------------------SFVG 125 (202)
T ss_pred HHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCC-----C------------------ceEE
Confidence 3455555 45789999999999999887777766654 22234433322110 0 3467
Q ss_pred EEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 558 YVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 558 YVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.++.+++++.+--. .... ....||+.+..-+.+.|..
T Consensus 126 ~~~~~~~~~~~g~~--~~~~-~~~~eD~~~~~r~~~~G~~ 162 (202)
T cd04185 126 VLISRRVVEKIGLP--DKEF-FIWGDDTEYTLRASKAGPG 162 (202)
T ss_pred EEEeHHHHHHhCCC--Chhh-hccchHHHHHHHHHHcCCc
Confidence 89999999887321 1111 2346999999999988865
No 35
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=88.53 E-value=8 Score=38.31 Aligned_cols=113 Identities=11% Similarity=0.014 Sum_probs=65.1
Q ss_pred HHhhhhhcC--CceEEEEecCCccccHHHHHHHHhhcCCCc-ceEEEeeccC---CCcccc-ccce-----eccccCCCC
Q 006408 480 ICEFGVQNV--TAAYIMKCDDDTFIRVDAVLKEIEGIFPKR-SLYMGNLNLL---HRPLRT-GKWA-----VTYEEWPQE 547 (646)
Q Consensus 480 ~l~wa~~~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~-~lY~G~v~~~---~~P~R~-sKWy-----Vs~eeyp~~ 547 (646)
++.++.+.. +.+||+.+|+|+.+..+.|...+..+.... .+..|..... ..+... ..|. .........
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNE 152 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccc
Confidence 456665543 479999999999999999888887764322 2222221110 001100 0110 000000000
Q ss_pred CCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 548 VYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 548 ~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.--.++.|++.+++++++..+--- .. .+..||+-++.-+.+.|..
T Consensus 153 ~~~~~~~g~~~~~rr~~~~~iGgf--~~---~~~~eD~dl~~r~~~~G~~ 197 (236)
T cd06435 153 RNAIIQHGTMCLIRRSALDDVGGW--DE---WCITEDSELGLRMHEAGYI 197 (236)
T ss_pred cCceEEecceEEEEHHHHHHhCCC--CC---ccccchHHHHHHHHHCCcE
Confidence 001356799999999999998531 11 1347999999999888865
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=88.40 E-value=5.1 Score=43.95 Aligned_cols=105 Identities=15% Similarity=0.123 Sum_probs=61.2
Q ss_pred CceEEEEecCCccccHHHHHHHHhhcCCC-cceEEEeeccCCCccccccceec------cccCC----C--CCCCCCCCC
Q 006408 489 TAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLLHRPLRTGKWAVT------YEEWP----Q--EVYPPYANG 555 (646)
Q Consensus 489 ~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~~~P~R~sKWyVs------~eeyp----~--~~YPpY~~G 555 (646)
+.+|++.+|+|+.+..+.|.+.+...... ..+..|......... ..+..++ ...|+ . .....++.|
T Consensus 133 ~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 211 (384)
T TIGR03469 133 PADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESF-WEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAG 211 (384)
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCH-HHHHHHHHHHHHHHHhcchhhhcCCCccceeecc
Confidence 38999999999999998888887765322 233322221100000 0000000 00011 0 112345679
Q ss_pred CeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 556 PGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 556 ~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
++.++++++.+.+--. ........||+.++.-+.+.|..
T Consensus 212 ~~~lirr~~~~~vGGf---~~~~~~~~ED~~L~~r~~~~G~~ 250 (384)
T TIGR03469 212 GCILIRREALERIGGI---AAIRGALIDDCTLAAAVKRSGGR 250 (384)
T ss_pred eEEEEEHHHHHHcCCH---HHHhhCcccHHHHHHHHHHcCCc
Confidence 9999999999998432 11122358999999999998854
No 37
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=88.34 E-value=8.3 Score=43.18 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=85.5
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHH
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEI 511 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L 511 (646)
+..+ +++....+.++.+.+.+..+.+..+..+.... |.. |. .+++.+....+.+|++..|.|+.+..+.|...+
T Consensus 104 ~~eI-ivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 104 NIEV-IAINDGSSDDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred CeEE-EEEECCCCccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHH
Confidence 4443 33433333344455555556676665554332 222 43 456667677789999999999999999888887
Q ss_pred hhc--CCCcceEEEeeccCCCccccccceeccccCCC---------CC--CCCCCCCCeEEeCHHHHHHHHHHhcCCccC
Q 006408 512 EGI--FPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQ---------EV--YPPYANGPGYVISSDIAKFIVLQHGNQSLR 578 (646)
Q Consensus 512 ~~~--~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~---------~~--YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~ 578 (646)
+.. ++.-....|......+..--++.... +|.. .. -+..++|.+.++.+++++.+--. ..
T Consensus 178 ~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~--~~--- 250 (444)
T PRK14583 178 APLIANPRTGAVTGNPRIRTRSTLIGRVQVG--EFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYW--SP--- 250 (444)
T ss_pred HHHHhCCCeEEEEccceecCCCcchhhHHHH--HHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCC--CC---
Confidence 755 22222333332211100000111000 1100 01 12245789999999999887431 11
Q ss_pred CCCCChHHHHHHHHHcCCC
Q 006408 579 LFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 579 ~f~~EDV~iGi~l~~lgi~ 597 (646)
..-.||..++.-+...|.+
T Consensus 251 ~~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWS 269 (444)
T ss_pred CcccccHHHHHHHHHcCCe
Confidence 1236999999999988865
No 38
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=88.18 E-value=3.1 Score=38.61 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=65.4
Q ss_pred EEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHh-----hcCcEEEEeecccccchhHHH
Q 006408 403 IGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAA-----FFGDIVILPFMDRYELVVLKT 477 (646)
Q Consensus 403 I~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae-----~ygDII~~df~DsY~nLtlKt 477 (646)
|.|.+-++..+||..+++..... ++...||-|..........+..... .++ .+....----.+..
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~----~~l~~gEiGC~lSH 71 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDALFLPRYG----RPLTPGEIGCFLSH 71 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHHHhhhhcC----CCCChhhHHHHHHH
Confidence 45788899999999999855433 3456677665443222222222111 111 00111111112333
Q ss_pred HHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCe
Q 006408 478 IAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPG 557 (646)
Q Consensus 478 l~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~G 557 (646)
+.+++-+.+ -+.++.+-..||+.+..+ +..|
T Consensus 72 ~~~w~~~~~-~~~~~alIlEDDv~~~~~------------------------------------------------~~~~ 102 (128)
T cd06532 72 YKLWQKIVE-SNLEYALILEDDAILDPD------------------------------------------------GTAG 102 (128)
T ss_pred HHHHHHHHH-cCCCeEEEEccCcEECCC------------------------------------------------CceE
Confidence 444444432 256899999999999876 5679
Q ss_pred EEeCHHHHHHHHHH
Q 006408 558 YVISSDIAKFIVLQ 571 (646)
Q Consensus 558 YVLSrdla~~Iv~~ 571 (646)
|+||+..|++|++.
T Consensus 103 Y~vs~~~A~~ll~~ 116 (128)
T cd06532 103 YLVSRKGAKKLLAA 116 (128)
T ss_pred EEeCHHHHHHHHHh
Confidence 99999999999996
No 39
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=87.99 E-value=6.2 Score=41.09 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=94.6
Q ss_pred EEEeCCCCCHH-HHHHHHHHhhcccccC-CCceEEEEEEeeCCChhHHHH-------HHHHHhhcCcEEEEeecccccch
Q 006408 403 IGVLSATNHFA-ERMAIRKTWMQSSKIK-SSNVVARFFVALNPRKEVNAV-------LKKEAAFFGDIVILPFMDRYELV 473 (646)
Q Consensus 403 I~V~Sap~~~~-rR~aIR~TW~~~~~i~-~~~v~~~FfVG~~~~~~~~~~-------L~~Eae~ygDII~~df~DsY~nL 473 (646)
|+|++--.... -...++..+....... ..++.+ |++..+.++++... |.+| +..-+.+-+...-.|.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~---~~~~~~v~~~~r~~~~ 78 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEE---LGAQGRIYYRRRRENT 78 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHH---hCCCCcEEEEEcCCCC
Confidence 44555444444 4566666653110000 123455 77765555443221 2223 3322223333333344
Q ss_pred hHHHHHHHhhhhhc-CCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCcc-cc---ccce----------
Q 006408 474 VLKTIAICEFGVQN-VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPL-RT---GKWA---------- 538 (646)
Q Consensus 474 tlKtl~~l~wa~~~-~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~-R~---sKWy---------- 538 (646)
-+|+-.+-...... .+.+||+-.|.|+.+..+.|...+..+..... +|-+....... ++ .++.
T Consensus 79 g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 79 GRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANRLYGPV 156 (254)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHHHHHHH
Confidence 44555444433322 47899999999999999999998887632111 23332111100 00 1110
Q ss_pred --eccccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhc---CCcc-CCCCCChHHHHHHHHHcCCC
Q 006408 539 --VTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHG---NQSL-RLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 539 --Vs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~---~~~l-~~f~~EDV~iGi~l~~lgi~ 597 (646)
.....|.. .-.+|.|...++.++++..+..-.. .... .-.-.||..+|+.+...|.+
T Consensus 157 ~~~~~~~~~~--~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 157 FGRGLAAWQG--GEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHhcC--CccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 00011211 1135679999999999887632100 0011 12357999999999988865
No 40
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=87.91 E-value=12 Score=36.80 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=80.1
Q ss_pred eEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHh
Q 006408 433 VVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 512 (646)
Q Consensus 433 v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 512 (646)
..++++...+.+ .....+ ++...+..+.+.. .+. .-|.- .+..+.+....+|++.+|+|+.+..+.|...++
T Consensus 29 ~eiivvdd~s~d-~~~~~l-~~~~~~~~~~v~~-~~~----~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 29 LEIIVVTDGDDE-PYLSIL-SQTVKYGGIFVIT-VPH----PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred CEEEEEeCCCCh-HHHHHH-HhhccCCcEEEEe-cCC----CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHHHH
Confidence 344444433333 333333 3445566666654 221 12332 234455555899999999999999999888887
Q ss_pred hcCC-CcceEEEeeccCC---Ccccc-ccceec---cccCCC-C--CCCCCCCCCeEEeCHHHHHHHHHHhc-----CCc
Q 006408 513 GIFP-KRSLYMGNLNLLH---RPLRT-GKWAVT---YEEWPQ-E--VYPPYANGPGYVISSDIAKFIVLQHG-----NQS 576 (646)
Q Consensus 513 ~~~~-~~~lY~G~v~~~~---~P~R~-sKWyVs---~eeyp~-~--~YPpY~~G~GYVLSrdla~~Iv~~~~-----~~~ 576 (646)
.+.. .-.+..|...... .+... ...+.. ...++. . .--+++.|++.++.+++++.+.-... -..
T Consensus 101 ~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~ 180 (235)
T cd06434 101 PFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMG 180 (235)
T ss_pred hccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcC
Confidence 7742 2222223222111 11100 000000 000000 0 01124567888888888877543210 011
Q ss_pred cCCCCCChHHHHHHHHHcCCC
Q 006408 577 LRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 577 l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.+...-||..++.-+.+.|..
T Consensus 181 ~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 181 RRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred CCCCcCchHHHHHHHHHCCCe
Confidence 134456999999888887765
No 41
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.24 E-value=29 Score=37.87 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=106.0
Q ss_pred ceEEEEEeCCCCCH-HHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHH
Q 006408 399 VHLFIGVLSATNHF-AERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKT 477 (646)
Q Consensus 399 v~LlI~V~Sap~~~-~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKt 477 (646)
..+-|+|.+--.+. --.+.++..=.+. ..+..+.++.. ..+++.-+.+.+-...+++.+.+... ..-...-
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d-~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDD-GSTDETYEILEELGAEYGPNFRVIYP---EKKNGGK 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECC-CCChhHHHHHHHHHhhcCcceEEEec---cccCccc
Confidence 45566666654444 2234444333222 22344444444 33344445555555666533333311 1112223
Q ss_pred HHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCcce-EEEeeccCCCcc-cc--ccc----eec--c--ccCC
Q 006408 478 IAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSL-YMGNLNLLHRPL-RT--GKW----AVT--Y--EEWP 545 (646)
Q Consensus 478 l~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~l-Y~G~v~~~~~P~-R~--sKW----yVs--~--eeyp 545 (646)
..++.++......++++..|-|+.+..|.|.+.+..+...... +.|.......+. .+ ++- |.. . ..+.
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 4567777777789999999999999999999999887543333 445442111110 00 000 000 0 0001
Q ss_pred -CCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 546 -QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 546 -~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.......|.|++.++.+++++.+... ....--||..+++.+...|..
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g~~-----~~~~i~ED~~lt~~l~~~G~~ 253 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVGGW-----LEDTITEDADLTLRLHLRGYR 253 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhCCC-----CCCceeccHHHHHHHHHCCCe
Confidence 12257789999999999999998732 123456999999999988866
No 42
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=86.87 E-value=6.7 Score=37.66 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=78.7
Q ss_pred EEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhh
Q 006408 434 VARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG 513 (646)
Q Consensus 434 ~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~ 513 (646)
.++++.-.+.+..+...+.+-.+.+. +..+....+.- + -..+..+......+|++.+|+|.++..+.|...++.
T Consensus 31 eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n~G----~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~ 104 (201)
T cd04195 31 EVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKNRG----L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDF 104 (201)
T ss_pred EEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCcccc----H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHH
Confidence 34333333334444444544445555 54444333211 1 123555566668999999999999998888887776
Q ss_pred cC--CCcceEEEeeccCCCcccc--ccceecc-----ccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCCh
Q 006408 514 IF--PKRSLYMGNLNLLHRPLRT--GKWAVTY-----EEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMED 584 (646)
Q Consensus 514 ~~--~~~~lY~G~v~~~~~P~R~--sKWyVs~-----eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~ED 584 (646)
+. +.-.++.|.........+. .+. .+. ..+....- + ..+++.++.+.++..+..- . .....||
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~rr~~~~~~g~~--~---~~~~~eD 176 (201)
T cd04195 105 IEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRRS-P-FNHPTVMFRKSKVLAVGGY--Q---DLPLVED 176 (201)
T ss_pred HHhCCCeEEEcccEEEECCCCCeecccc-CCCCHHHHHHHhccCC-C-CCChHHhhhHHHHHHcCCc--C---CCCCchH
Confidence 53 2334555554321110000 000 000 00100011 1 2466778888877765331 1 1256899
Q ss_pred HHHHHHHHHcCCC
Q 006408 585 VSMGMWVEQFNST 597 (646)
Q Consensus 585 V~iGi~l~~lgi~ 597 (646)
..+...+...|..
T Consensus 177 ~~~~~r~~~~g~~ 189 (201)
T cd04195 177 YALWARMLANGAR 189 (201)
T ss_pred HHHHHHHHHcCCc
Confidence 9999988877754
No 43
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=85.51 E-value=29 Score=36.69 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=80.4
Q ss_pred cCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCC-cceEEEeeccCCC----cc
Q 006408 458 FGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RSLYMGNLNLLHR----PL 532 (646)
Q Consensus 458 ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~lY~G~v~~~~~----P~ 532 (646)
+.++..+...++.---. =.-.+++++.... .+|++-.++|+++..+.|.+.++..... ...+.|....... +.
T Consensus 55 ~~~v~~i~~~~NlG~ag-g~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGFAG-GFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccchh-hhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 78888877666542111 0013555554322 2299999999999999888888775432 2333444332110 11
Q ss_pred cc--------ccc-eeccccCCC-----CCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 533 RT--------GKW-AVTYEEWPQ-----EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 533 R~--------sKW-yVs~eeyp~-----~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
+- ..| .....+... ...-.++.|++.++++++++++-- + .. --+...||+-++.=+.+.|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~-de-~~F~y~eD~D~~~R~~~~G~~ 208 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGG-F-DE-RFFIYYEDVDLCLRARKAGYK 208 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCC-C-Cc-ccceeehHHHHHHHHHHcCCe
Confidence 10 122 222222221 112225799999999999999975 1 12 124578999999999999965
No 44
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=84.41 E-value=44 Score=32.89 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=58.4
Q ss_pred CceEEEEecCCccccHHHHHHHH--hh-cCCC-cceEEEeeccC-CCcc-----ccccceeccccCCCCC--CCCCCCCC
Q 006408 489 TAAYIMKCDDDTFIRVDAVLKEI--EG-IFPK-RSLYMGNLNLL-HRPL-----RTGKWAVTYEEWPQEV--YPPYANGP 556 (646)
Q Consensus 489 ~akfvmKvDDDtfVnvd~Ll~~L--~~-~~~~-~~lY~G~v~~~-~~P~-----R~sKWyVs~eeyp~~~--YPpY~~G~ 556 (646)
+++|++..|+|+.+..+.|...+ .. .... .-..+|..... .... +...|........... -..++.|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 67999999999999988887774 22 2211 11222332211 1100 0011111000111111 12345678
Q ss_pred eEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 557 GYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 557 GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
|.++++++.+.+--- .... +...||+.+.+-+.+.|..
T Consensus 155 ~~~~rr~~~~~~ggf--d~~~-~~~~eD~d~~~r~~~~G~~ 192 (237)
T cd02526 155 GSLISLEALEKVGGF--DEDL-FIDYVDTEWCLRARSKGYK 192 (237)
T ss_pred ceEEcHHHHHHhCCC--CHHH-cCccchHHHHHHHHHcCCc
Confidence 889999999987531 1111 2456899999999988865
No 45
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=83.55 E-value=47 Score=33.46 Aligned_cols=111 Identities=7% Similarity=-0.080 Sum_probs=64.6
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcC-CCcceEEEeeccCCC------cccc--c---cceeccccCCCC
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHR------PLRT--G---KWAVTYEEWPQE 547 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~------P~R~--s---KWyVs~eeyp~~ 547 (646)
++..+......+|++.+|+|..+.++.|...+.... ....+.+|....... ..|. + ++.... ... .
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~-~ 161 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQT-LLW-P 161 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHH-HhC-C
Confidence 444555556789999999999999998888777653 234566676432110 1121 1 111111 111 1
Q ss_pred CCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 548 VYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 548 ~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.. ..+.|++.++++++++.|...... .....|.-+...+...|..
T Consensus 162 ~~-~d~~g~~~~~rr~~~~~i~~~~~~----~~~~~~~el~~~~~~~g~~ 206 (243)
T PLN02726 162 GV-SDLTGSFRLYKRSALEDLVSSVVS----KGYVFQMEIIVRASRKGYR 206 (243)
T ss_pred CC-CcCCCcccceeHHHHHHHHhhccC----CCcEEehHHHHHHHHcCCc
Confidence 11 235788889999999999753211 1223466666666666655
No 46
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=83.47 E-value=20 Score=36.01 Aligned_cols=114 Identities=12% Similarity=0.168 Sum_probs=68.4
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCC-cc-eEE-EeeccCCCccc-ccccee-cc--------ccCC
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK-RS-LYM-GNLNLLHRPLR-TGKWAV-TY--------EEWP 545 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~-~~-lY~-G~v~~~~~P~R-~sKWyV-s~--------eeyp 545 (646)
..+.++.+....+||+.+|+|+.+..+.|.+.++.+... .. .++ |.+.....+.. -.+++. .. ....
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766788999999999999999998888876422 22 232 22211111100 011100 00 0001
Q ss_pred CCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 546 QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 546 ~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
....+..++|++.++++++++.+... . .....||..+++-+.+.|.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~--~---~~~~~eD~~l~~rl~~~G~r 200 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGW--D---PFNVTEDADLGLRLARAGYR 200 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCC--C---cccchhhHHHHHHHHHCCce
Confidence 11233456899999999999998542 1 12346999999988887765
No 47
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=80.62 E-value=20 Score=34.99 Aligned_cols=154 Identities=14% Similarity=0.033 Sum_probs=80.6
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcCcE-EEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHH
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFGDI-VILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKE 510 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~ygDI-I~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~ 510 (646)
...++++-..+.+ .....+++..+.++.. ..+....+.- |. .++..+.+....+|++.+|+|.....+.+...
T Consensus 30 ~~eiivvdd~S~D-~t~~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKD-GTAEVARKLARKNPALIRVLTLPKNRG----KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCC-chHHHHHHHHHhCCCcEEEEEcccCCC----cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 3444444444433 3334455555556654 3333332221 21 23344445556799999999999999988888
Q ss_pred Hhh-cCCCcceEEEeeccCC-------Ccccc--ccc--eeccccCCCCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccC
Q 006408 511 IEG-IFPKRSLYMGNLNLLH-------RPLRT--GKW--AVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLR 578 (646)
Q Consensus 511 L~~-~~~~~~lY~G~v~~~~-------~P~R~--sKW--yVs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~ 578 (646)
++. ......+.+|...... ...|. ++. +...... ...+. -+..+..++++.++..+.... . ..
T Consensus 104 ~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-d~~~g~~~~~r~~~~~~~~~~--~-~~ 178 (211)
T cd04188 104 EEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLL-GLGIK-DTQCGFKLFTRDAARRLFPRL--H-LE 178 (211)
T ss_pred HHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHc-CCCCc-ccccCceeEcHHHHHHHHhhh--h-cc
Confidence 886 3344456677654321 11111 110 0000000 11111 123456899999999987431 1 11
Q ss_pred CCCCChHHHHHHHHHcCCC
Q 006408 579 LFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 579 ~f~~EDV~iGi~l~~lgi~ 597 (646)
...+|.-+-.-+.+.|..
T Consensus 179 -~~~~d~el~~r~~~~g~~ 196 (211)
T cd04188 179 -RWAFDVELLVLARRLGYP 196 (211)
T ss_pred -ceEeeHHHHHHHHHcCCe
Confidence 224588777777777754
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=80.27 E-value=13 Score=35.07 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhh-cCCCcceEEEee
Q 006408 447 VNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG-IFPKRSLYMGNL 525 (646)
Q Consensus 447 ~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~-~~~~~~lY~G~v 525 (646)
+...++.-...+..+..+....+... -..+..+.+....+|++.+|+|..+..+.|..++.. ......+.+|..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~n~G~-----~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~ 116 (185)
T cd04179 42 TAEIARELAARVPRVRVIRLSRNFGK-----GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSR 116 (185)
T ss_pred hHHHHHHHHHhCCCeEEEEccCCCCc-----cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEe
Confidence 34444444455666655555444321 134444555555699999999999998888888876 333445666665
Q ss_pred ccCCC-----cccc-ccceeccccCC-CCCCCCCCCCCeEEeCHHHHHHHH
Q 006408 526 NLLHR-----PLRT-GKWAVTYEEWP-QEVYPPYANGPGYVISSDIAKFIV 569 (646)
Q Consensus 526 ~~~~~-----P~R~-sKWyVs~eeyp-~~~YPpY~~G~GYVLSrdla~~Iv 569 (646)
..... ..+. ..+........ ...-.....|+.+++++++++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 117 FVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred ecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 43221 1111 11111000000 111223456778899999999996
No 49
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=79.79 E-value=7.4 Score=37.51 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=63.7
Q ss_pred EEEEecCCccccHHHHHHHHhhcC-CCcceEEEeeccCCCcccc--ccceecccc---------CCCCCCCCCCCCCeEE
Q 006408 492 YIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPLRT--GKWAVTYEE---------WPQEVYPPYANGPGYV 559 (646)
Q Consensus 492 fvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~P~R~--sKWyVs~ee---------yp~~~YPpY~~G~GYV 559 (646)
||+-+|+|+-+..+.|.+.+..+. +.-.+.-|.+... +..+ .++...... ...-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999998888877665 2223333433321 1111 111111100 0123356788999999
Q ss_pred eCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 560 ISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 560 LSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
+++++++.+.-- . -.....||..++.-+.+.|.+
T Consensus 79 ~r~~~l~~vg~~--~--~~~~~~ED~~l~~~l~~~G~~ 112 (193)
T PF13632_consen 79 FRREALREVGGF--D--DPFSIGEDMDLGFRLRRAGYR 112 (193)
T ss_pred eeHHHHHHhCcc--c--ccccccchHHHHHHHHHCCCE
Confidence 999999988532 1 234556999999999988865
No 50
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=73.25 E-value=33 Score=33.38 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=50.4
Q ss_pred HhhhhhcCCceEEEEecCCccccHHHHHHHHhh-cCCCcceEEEeeccCCCccccccc---eecc--cc---CCCCCCCC
Q 006408 481 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEG-IFPKRSLYMGNLNLLHRPLRTGKW---AVTY--EE---WPQEVYPP 551 (646)
Q Consensus 481 l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~-~~~~~~lY~G~v~~~~~P~R~sKW---yVs~--ee---yp~~~YPp 551 (646)
+..+.+....+|++.+|+|..+..+.|...++. ..+...+..|...........-.+ +.+. .. +....-..
T Consensus 70 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (224)
T cd06442 70 YIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVS 149 (224)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 334444455699999999999998888888876 333345555654322111100000 0000 00 00011134
Q ss_pred CCCCCeEEeCHHHHHHHH
Q 006408 552 YANGPGYVISSDIAKFIV 569 (646)
Q Consensus 552 Y~~G~GYVLSrdla~~Iv 569 (646)
.+.|++.++++++++.+.
T Consensus 150 ~~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 150 DPTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCCccchhhHHHHHHHh
Confidence 567888899999999997
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=72.78 E-value=1.1e+02 Score=31.98 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=89.3
Q ss_pred CceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEE--eecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHH
Q 006408 431 SNVVARFFVALNPRKEVNAVLKKEAAFFGDIVIL--PFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVL 508 (646)
Q Consensus 431 ~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~--df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll 508 (646)
.++.++++=+.+ .......|.+-.+.++-+..+ +......+.+ .+..-+.+....+||+.+|.|+++..+.+.
T Consensus 33 ~~~eiIvvd~~s-~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGS-SDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCC-chhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 344444443333 233446677766777766222 2222222333 234445556689999999999999999988
Q ss_pred HHHh---hcCC-CcceEEEeeccCCCcccc-----ccceeccc---cC---CCCCCC-CCCCCCeEEeCHHHHHHHHHHh
Q 006408 509 KEIE---GIFP-KRSLYMGNLNLLHRPLRT-----GKWAVTYE---EW---PQEVYP-PYANGPGYVISSDIAKFIVLQH 572 (646)
Q Consensus 509 ~~L~---~~~~-~~~lY~G~v~~~~~P~R~-----sKWyVs~e---ey---p~~~YP-pY~~G~GYVLSrdla~~Iv~~~ 572 (646)
+.++ .+.. ...++++-+.....+.-. .+...... .. ..+.+. .+..|++.+++++.-..|.--
T Consensus 108 ~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf- 186 (281)
T PF10111_consen 108 KLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF- 186 (281)
T ss_pred HHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC-
Confidence 8888 4432 234444443332222110 10000000 00 111221 233569999999999998652
Q ss_pred cCCccCCCCCChHHHHHHHHHcCCC
Q 006408 573 GNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 573 ~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.........||.-++.=+.+.+..
T Consensus 187 -DE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 187 -DERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred -CccccCCCcchHHHHHHHHHcCCc
Confidence 233334568999999999988865
No 52
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=71.70 E-value=98 Score=30.60 Aligned_cols=113 Identities=14% Similarity=0.014 Sum_probs=60.9
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCc-ceEEEeeccCC---Ccc-cc----ccceeccccCC--CCC
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKR-SLYMGNLNLLH---RPL-RT----GKWAVTYEEWP--QEV 548 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~-~lY~G~v~~~~---~P~-R~----sKWyVs~eeyp--~~~ 548 (646)
.+..+.+..+.+||+.+|.|+.+..+.|...+......+ .+..|.+.... ..+ +- ..++...+.+. ...
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTG 157 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcC
Confidence 455666667899999999999999988887554443222 22333222110 000 00 00000000000 011
Q ss_pred CCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 549 YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 549 YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
....+.|++-++.+++++.+--- .. ....||+.++.-+...|.+
T Consensus 158 ~~~~~~g~~~~~rr~~~~~vgg~--~~---~~~~ED~~l~~rl~~~G~~ 201 (232)
T cd06437 158 LFFNFNGTAGVWRKECIEDAGGW--NH---DTLTEDLDLSYRAQLKGWK 201 (232)
T ss_pred CeEEeccchhhhhHHHHHHhCCC--CC---CcchhhHHHHHHHHHCCCe
Confidence 11123566667888888877421 11 1347999999988877754
No 53
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=71.61 E-value=63 Score=34.78 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=70.6
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcCc-EEEEeecccccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHH
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFGD-IVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKE 510 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~ygD-II~~df~DsY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~ 510 (646)
...++++-..+++... +.+++-++.+++ ++.+....++- |.- ++.-+.++...+|++.+|.|.-.+++.+.+.
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4566666655555432 233333334443 44444333332 222 2334445567899999999999999999888
Q ss_pred HhhcCCCcceEEEeecc-CCCcccc--cc---ceeccccCCCCCCCCCCCCCeEEeCHHHHHHHHH
Q 006408 511 IEGIFPKRSLYMGNLNL-LHRPLRT--GK---WAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVL 570 (646)
Q Consensus 511 L~~~~~~~~lY~G~v~~-~~~P~R~--sK---WyVs~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~ 570 (646)
++.......+..|.... ...+.|. ++ +.+. ......++.+..| .-++++++++.+..
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~--~~~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQ--RTTGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHH--HHcCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88764433454454322 2233342 22 1111 1112234444333 34899999999965
No 54
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=71.58 E-value=5.5 Score=41.79 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCCeEEeCHHHHHHHHHHhcCCcc---CCCCCChHHHHHHHHHcCCC
Q 006408 554 NGPGYVISSDIAKFIVLQHGNQSL---RLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 554 ~G~GYVLSrdla~~Iv~~~~~~~l---~~f~~EDV~iGi~l~~lgi~ 597 (646)
+|+|++||..+|+.|.+... ..+ +.+.--|-.+..|+.++|+.
T Consensus 12 GGgG~~iS~pLa~~L~~~~d-~C~~r~~~~~g~D~~i~~C~~~lgv~ 57 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQD-DCIERYPHLYGGDQRIQACIAELGVP 57 (255)
T ss_pred cCceeEEcHHHHHHHHHHHH-HHHHhcCCCCCchHHHHHHHHHhCCC
Confidence 89999999999999987632 222 23334799999999999864
No 55
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=69.43 E-value=49 Score=34.08 Aligned_cols=114 Identities=7% Similarity=0.077 Sum_probs=60.9
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCC--cceEEEeeccCCC-----c-cccccceeccc--cCCCC-C
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPK--RSLYMGNLNLLHR-----P-LRTGKWAVTYE--EWPQE-V 548 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~--~~lY~G~v~~~~~-----P-~R~sKWyVs~e--eyp~~-~ 548 (646)
+++++.+ ..++||+..|||+.+..+.|...++..... .-.++|....... | .+...+..... ..... .
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQ 143 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCce
Confidence 4555543 278999999999999987777766654322 2223332211100 0 01001111100 00111 1
Q ss_pred CCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 549 YPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 549 YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
-..++.++|.++++++++.+--- ...+ ++..||+-+.+=+.+.|..
T Consensus 144 ~~~~~~~sg~li~~~~~~~iG~f--de~~-fi~~~D~e~~~R~~~~G~~ 189 (281)
T TIGR01556 144 KTSFLISSGCLITREVYQRLGMM--DEEL-FIDHVDTEWSLRAQNYGIP 189 (281)
T ss_pred eccEEEcCcceeeHHHHHHhCCc--cHhh-cccchHHHHHHHHHHCCCE
Confidence 11344566778999999988431 1111 3456899888878887764
No 56
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=68.80 E-value=49 Score=38.24 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=60.3
Q ss_pred CceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCcccc--ccceeccccCCC---------C--CCCCCCCC
Q 006408 489 TAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQ---------E--VYPPYANG 555 (646)
Q Consensus 489 ~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~--sKWyVs~eeyp~---------~--~YPpY~~G 555 (646)
++++++..|-|+.+..+.|....... +...+.-..+....++... +..|. .+|.+ + .-+-.+.|
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~~~~~~~~~~~ag~y~--~ef~~~~~~~l~~r~~LG~~~~~~G 234 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVFSLPRDWGEWVAGTYM--DEFAESHLKDLPVREALGGLIPSAG 234 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEecceeccCCchhHHHHHHHH--HHHHHHHHHHHHHHHhcCCccccCC
Confidence 46999999999999999876543332 2222211111111111110 11111 11110 1 12345689
Q ss_pred CeEEeCHHHHHHHHHHhcCCcc-CCCCCChHHHHHHHHHcCCC
Q 006408 556 PGYVISSDIAKFIVLQHGNQSL-RLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 556 ~GYVLSrdla~~Iv~~~~~~~l-~~f~~EDV~iGi~l~~lgi~ 597 (646)
.|+++++++++.|.....-... .-.-.||.-+|+-+...|.+
T Consensus 235 tg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~r 277 (504)
T PRK14716 235 VGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFR 277 (504)
T ss_pred eeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCE
Confidence 9999999999999653100001 12357999999999999976
No 57
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=64.66 E-value=85 Score=37.74 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=102.2
Q ss_pred CceEEEEEeCCCCCHHH-HHHHHHHhhcccccC-CCceEEEEEEeeCCChhHHH----HHHHHHhhcC---cEEEEeecc
Q 006408 398 PVHLFIGVLSATNHFAE-RMAIRKTWMQSSKIK-SSNVVARFFVALNPRKEVNA----VLKKEAAFFG---DIVILPFMD 468 (646)
Q Consensus 398 ~v~LlI~V~Sap~~~~r-R~aIR~TW~~~~~i~-~~~v~~~FfVG~~~~~~~~~----~L~~Eae~yg---DII~~df~D 468 (646)
..++-|+|.+--...++ +..|+.++.+-.... ..++.+ |++....++++.. .+.+=.++|+ .|... .
T Consensus 123 ~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr---~ 198 (691)
T PRK05454 123 EARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYR---R 198 (691)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEE---E
Confidence 44566666655544332 467777775432211 123444 7777665554321 1112223343 34433 3
Q ss_pred cccchhHHHHHHHhhhhhc-CCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceec-------
Q 006408 469 RYELVVLKTIAICEFGVQN-VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVT------- 540 (646)
Q Consensus 469 sY~nLtlKtl~~l~wa~~~-~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs------- 540 (646)
.-.|.-.|.-.+-.|.... .+++|++-.|-|+.+..|.|.+.+..+..+.. +|-+.....+.....++--
T Consensus 199 R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~qqf~~~ 276 (691)
T PRK05454 199 RRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQQFATR 276 (691)
T ss_pred CCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHHHHHHH
Confidence 3344455766655554432 47899999999999999999998876532111 3444322222111111100
Q ss_pred ---------cccCCCCCCCCCCCCCeEEeCHHHHHHHHHHh-cCCccC---CCCCChHHHHHHHHHcCCCCCcccccC
Q 006408 541 ---------YEEWPQEVYPPYANGPGYVISSDIAKFIVLQH-GNQSLR---LFKMEDVSMGMWVEQFNSTMTVRYSHS 605 (646)
Q Consensus 541 ---------~eeyp~~~YPpY~~G~GYVLSrdla~~Iv~~~-~~~~l~---~f~~EDV~iGi~l~~lgi~~pV~y~h~ 605 (646)
..-|-. .-- .+.|...|+.+++...+..-. ....-+ -.--||..+|..+...|.+ +.|..+
T Consensus 277 ~y~~~~~~G~~~w~~-~~g-~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~Gyr--V~~~pd 350 (691)
T PRK05454 277 VYGPLFAAGLAWWQG-GEG-NYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWG--VWLAPD 350 (691)
T ss_pred HHHHHHHhhhhhhcc-Ccc-ccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCE--EEEcCc
Confidence 000110 011 124777788888777653100 001111 2345899999999999876 444443
No 58
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=59.05 E-value=2e+02 Score=34.66 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=69.1
Q ss_pred chhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCcce-EEEeec--cCCCcc-cc-cc-ceeccc--c
Q 006408 472 LVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSL-YMGNLN--LLHRPL-RT-GK-WAVTYE--E 543 (646)
Q Consensus 472 nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~l-Y~G~v~--~~~~P~-R~-sK-WyVs~e--e 543 (646)
|...|.- .+..+.++.+.+|++..|.|+.+..+.|...+..+..+..+ +++... .+..|+ |+ +. ..++.+ .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3334533 35666667788999999999999999888877665221121 222111 111221 11 00 000000 0
Q ss_pred -C----C--CCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 544 -W----P--QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 544 -y----p--~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
| + ...-..++.|.+.++.+++++.+--- .. ..-.||..+++-+.+.|.+
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf--~~---~~vtED~~l~~rL~~~G~~ 346 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGI--AG---ETVTEDAETALKLHRRGWN 346 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCC--CC---CCcCcHHHHHHHHHHcCCe
Confidence 0 0 00112456799999999999987431 11 1237999999999998876
No 59
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=56.05 E-value=1.4e+02 Score=36.97 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=65.9
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhc--CCCcceEEEeec--cCCCcc-cc-ccc-eeccc-c--C----C
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI--FPKRSLYMGNLN--LLHRPL-RT-GKW-AVTYE-E--W----P 545 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~--~~~~~lY~G~v~--~~~~P~-R~-sKW-yVs~e-e--y----p 545 (646)
.+..+.++.+.+|++..|.|+.+..+-|...+..+ +++-.+ ++... .+..|. |+ +.. ..+.+ + | +
T Consensus 330 nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~Vgl-VQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~ 408 (852)
T PRK11498 330 NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAM-MQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQD 408 (852)
T ss_pred HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEE-EEcceeccCCchHHHhhHHHhhcccchhHHHHHHHh
Confidence 45666667789999999999999988877766542 222122 22111 111121 11 100 00000 0 0 0
Q ss_pred --CCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 546 --QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 546 --~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
...--.++.|++.++.+++++.+--- ... ...||..+++-+...|.+
T Consensus 409 g~~~~~a~~~~Gs~aviRReaLeeVGGf--d~~---titED~dlslRL~~~Gyr 457 (852)
T PRK11498 409 GNDMWDATFFCGSCAVIRRKPLDEIGGI--AVE---TVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred HHHhhcccccccceeeeEHHHHHHhcCC--CCC---ccCccHHHHHHHHHcCCE
Confidence 00012457899999999999998542 111 246999999999998875
No 60
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=55.86 E-value=2e+02 Score=27.78 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=60.5
Q ss_pred HhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeecc----CCCccc--cccceeccccCCCCCCCCCCC
Q 006408 481 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNL----LHRPLR--TGKWAVTYEEWPQEVYPPYAN 554 (646)
Q Consensus 481 l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~----~~~P~R--~sKWyVs~eeyp~~~YPpY~~ 554 (646)
+..+......+|++.+|+|..+..+.+...+........ .+|.... .....+ ..++... ......+| +
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~ 137 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGA-VAGAFRLRFDDPGPRLRLLELGANLR----SRLFGLPY-G 137 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCc-EEEEEEeeecCCccchhhhhhcccce----ecccCCCc-C
Confidence 344555566899999999999988777776655443322 3333221 111111 0111111 00111122 4
Q ss_pred CCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcCCC
Q 006408 555 GPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 555 G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
+.+.++++++.+.+..- ... +..||.-++.-+.+.|..
T Consensus 138 ~~~~~~r~~~~~~~G~f--d~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 138 DQGLFIRRELFEELGGF--PEL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred CceEEEEHHHHHHhCCC--Ccc---ccccHHHHHHHHHhCCCE
Confidence 56889999998887531 111 278999998888888854
No 61
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=54.24 E-value=16 Score=34.46 Aligned_cols=31 Identities=32% Similarity=0.595 Sum_probs=20.7
Q ss_pred cccccccCCCCCCCCCCCCCCCeEEEEEEEccc---------eEEEEeCCe
Q 006408 294 KRFIGREQKPEVTWPFPFVEGRLFILTLRAGVE---------GYHINVGGR 335 (646)
Q Consensus 294 ~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~e---------gf~v~VnG~ 335 (646)
-||+||.. .|+.|+|||.+... .++|+|||-
T Consensus 87 LRFvGRSG-----------RGKsFtltItv~t~PpqvAty~~AIKVTVDGP 126 (135)
T PF00853_consen 87 LRFVGRSG-----------RGKSFTLTITVFTNPPQVATYHRAIKVTVDGP 126 (135)
T ss_dssp -EECST-T-----------TTSEEEEEEEE-SSS-EEEEECCEEEEESS-S
T ss_pred cccccccC-----------CccceEEEEEEeCCCchHHhheeeEEEEecCC
Confidence 37899865 59999999988654 556677763
No 62
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=49.77 E-value=1.7e+02 Score=25.25 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcC--CCcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCe
Q 006408 480 ICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPG 557 (646)
Q Consensus 480 ~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~--~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~G 557 (646)
.+.++.+....+|++.+|+|..+..+.+...+.... +...+..|. ++
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~-------------------------------~~ 116 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP-------------------------------GN 116 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc-------------------------------ch
Confidence 334444444899999999999998888777644322 212222111 88
Q ss_pred EEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHHcC
Q 006408 558 YVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFN 595 (646)
Q Consensus 558 YVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~lg 595 (646)
+++++++.+.+.... ......-||..+...+.+.+
T Consensus 117 ~~~~~~~~~~~~~~~---~~~~~~~ed~~~~~~~~~~g 151 (156)
T cd00761 117 LLFRRELLEEIGGFD---EALLSGEEDDDFLLRLLRGG 151 (156)
T ss_pred heeeHHHHHHhCCcc---hHhcCCcchHHHHHHHHhhc
Confidence 999999999886421 11122268888877776655
No 63
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=48.78 E-value=1.1e+02 Score=33.58 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHH---HHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCCCCCC-CCCC
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVD---AVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYP-PYAN 554 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd---~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YP-pY~~ 554 (646)
.++.|+....++++++.+|||..+.++ -+.+.|..+.....++ .+.... .+|+....... +...|- .|+.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~~-~~~lyrs~ff~ 160 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDDT-PSLLYRTDFFP 160 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCCC-cceEEEecCCC
Confidence 366666655579999999999999888 3344444444444443 222111 12222111011 223333 5778
Q ss_pred CCeEEeCHHHHHHH
Q 006408 555 GPGYVISSDIAKFI 568 (646)
Q Consensus 555 G~GYVLSrdla~~I 568 (646)
|.|.++.+++-+.+
T Consensus 161 glGWml~r~~W~e~ 174 (334)
T cd02514 161 GLGWMLTRKLWKEL 174 (334)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999888777
No 64
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=46.40 E-value=73 Score=33.96 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=70.5
Q ss_pred ecCCcCCCCCCCCeeEEEccccCCCCCCCCEEEEecccC-CcccceeecCCCCCCCCCCccccchhhhhhccccCccccc
Q 006408 207 LQGLKSVDGEDPPKILHLNPRIKGDWSHRPVIEHNTCYR-MQWGTAQRCDGLSSKKDDDMLVDGNLRCEKWMRNDVADSK 285 (646)
Q Consensus 207 L~g~~~~~~~~~~i~LH~NpRl~~d~~~~pvIv~Nt~~~-~~WG~eeRc~~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~ 285 (646)
|.+-+...|. |.+.| |-|.. |+ .+.|--+-| .-|--+..-+..++..+. +||-.+|-+.-.+.
T Consensus 65 f~ppKpIRGG---IP~~F-PQFG~-~g---~l~qHGFaRn~~W~v~~~p~~lp~~~~a--~Vdl~Lk~~~~~~k------ 128 (305)
T KOG1594|consen 65 FKPPKPIRGG---IPICF-PQFGN-FG---SLPQHGFARNRFWEVENNPPPLPSLGKA--TVDLILKSSEDDLK------ 128 (305)
T ss_pred cCCCCcccCC---cceEe-eccCC-CC---cccccccccceeeEeccCCCCCCcCCce--eEEEEecCChhhhh------
Confidence 3444444442 55656 77764 22 455555554 578877766655543332 46655554411111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCeEEEEEEEccceEEEE-----eCCeEE-EEeecccCcCcccceEEEEecc
Q 006408 286 DSKTASWFKRFIGREQKPEVTWPFPFVEGRLFILTLRAGVEGYHIN-----VGGRHV-TSFPYRTGFTLEDATGLAIKGD 359 (646)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~-----VnG~h~-~sF~yR~~~~l~~v~~l~v~GD 359 (646)
+ |+|-| .|.++|..+....+.+ .|++.+ .+|+|++=|...||++++|.|=
T Consensus 129 -------------------i-Wp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL 184 (305)
T KOG1594|consen 129 -------------------I-WPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGL 184 (305)
T ss_pred -------------------h-CCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEecc
Confidence 1 56655 4677777775444432 377766 5889999888899999999995
Q ss_pred cceeee
Q 006408 360 VDIHSV 365 (646)
Q Consensus 360 v~l~sV 365 (646)
-.+..+
T Consensus 185 ~tldyl 190 (305)
T KOG1594|consen 185 ETLDYL 190 (305)
T ss_pred cccccc
Confidence 554443
No 65
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=43.52 E-value=5.1e+02 Score=28.98 Aligned_cols=110 Identities=15% Similarity=0.065 Sum_probs=63.7
Q ss_pred HHHhhhhhcCCceEEEEecCCccccHHHHHHHHhhcCC--CcceEEEeeccCCCcc-ccc---cceeccc---cCC----
Q 006408 479 AICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP--KRSLYMGNLNLLHRPL-RTG---KWAVTYE---EWP---- 545 (646)
Q Consensus 479 ~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~--~~~lY~G~v~~~~~P~-R~s---KWyVs~e---eyp---- 545 (646)
.++.++.+..+.+|++.+|+|..+..+.|.+.++.... .-....|.+....... +.. .+.+... +|.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 35566777778999999999999999998888876632 2223335443211100 000 1111110 110
Q ss_pred -------CCCCCCCCCCCeEEeCHHHHHHHHHHhcCCccCCCCCChHHHHHHHHH
Q 006408 546 -------QEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQ 593 (646)
Q Consensus 546 -------~~~YPpY~~G~GYVLSrdla~~Iv~~~~~~~l~~f~~EDV~iGi~l~~ 593 (646)
....+..++|++.++.++++.++.-- .. ..-.||..++.-+..
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf--~~---~~i~ED~~l~~rl~~ 250 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLY--NS---ETVGEDTDMTFQIRE 250 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCC--CC---CCcCccHHHHHHHHH
Confidence 11123346788889999998876431 11 123799999877654
No 66
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=33.75 E-value=40 Score=37.18 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=22.0
Q ss_pred cccccccCCCCCCCCCCCCCCCeEEEEEEEcc---------ceEEEEeCC
Q 006408 294 KRFIGREQKPEVTWPFPFVEGRLFILTLRAGV---------EGYHINVGG 334 (646)
Q Consensus 294 ~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~---------egf~v~VnG 334 (646)
-||.||.. .|+.|+|||.+-. ..++|+|||
T Consensus 184 LRFVGRSG-----------RGKsFtLTIti~TnP~qvATy~kaIKVTVDG 222 (475)
T KOG3982|consen 184 LRFVGRSG-----------RGKSFTLTITIFTNPPQVATYHKAIKVTVDG 222 (475)
T ss_pred ceeecccC-----------CCcceEEEEEEecCCcceeeeeceEEEeccC
Confidence 47788865 7899999998754 345566666
No 67
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=31.92 E-value=59 Score=32.98 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=63.3
Q ss_pred CCceEEEEecCCccccHHHHHHHHhhcC--CCcceEEEeeccCCC---cc-c--cccceec----cccCCCCCCCCCCCC
Q 006408 488 VTAAYIMKCDDDTFIRVDAVLKEIEGIF--PKRSLYMGNLNLLHR---PL-R--TGKWAVT----YEEWPQEVYPPYANG 555 (646)
Q Consensus 488 ~~akfvmKvDDDtfVnvd~Ll~~L~~~~--~~~~lY~G~v~~~~~---P~-R--~sKWyVs----~eeyp~~~YPpY~~G 555 (646)
.+.+|++.+|.|+.+..+.|...+..+. +.-....|.+..... ++ + +--|... ......-.+..++.|
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G 151 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPG 151 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCC
Confidence 4899999999999999998888877652 222234455432111 00 0 0000000 000111234667889
Q ss_pred CeEEeCHHHHHHHHHHhcC--------Ccc-------CCCCCChHHHHHHHHHcCCC
Q 006408 556 PGYVISSDIAKFIVLQHGN--------QSL-------RLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 556 ~GYVLSrdla~~Iv~~~~~--------~~l-------~~f~~EDV~iGi~l~~lgi~ 597 (646)
+++++.+++++.+...... ..+ .....||..++..+...|..
T Consensus 152 ~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~ 208 (244)
T cd04190 152 CFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPK 208 (244)
T ss_pred ceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCc
Confidence 9999999998876332100 000 12246999998888777754
No 68
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=30.35 E-value=4.7e+02 Score=24.70 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=47.8
Q ss_pred CCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccce---------ec----cccCCCCCCCCCCC
Q 006408 488 VTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWA---------VT----YEEWPQEVYPPYAN 554 (646)
Q Consensus 488 ~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWy---------Vs----~eeyp~~~YPpY~~ 554 (646)
.+.+|++.+|.|+.+..+.|...+..+.....+..|...... +. ..|. .. ...+..-..+.++.
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN-PD--DSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLG 156 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC-Cc--cCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeec
Confidence 368999999999999988888887776544445556543211 11 1111 00 00000112344678
Q ss_pred CCeEEeCHHHHHH
Q 006408 555 GPGYVISSDIAKF 567 (646)
Q Consensus 555 G~GYVLSrdla~~ 567 (646)
|.++++++++++.
T Consensus 157 G~~~~~rr~~l~~ 169 (183)
T cd06438 157 GTGMCFPWAVLRQ 169 (183)
T ss_pred CchhhhHHHHHHh
Confidence 9999999999988
No 69
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=28.94 E-value=2.2e+02 Score=27.74 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=26.2
Q ss_pred HhhhhhcCCceEEEEecCCccccHHHHHHHHhhc
Q 006408 481 CEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGI 514 (646)
Q Consensus 481 l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~~~ 514 (646)
...+.+....+|++.+|+|.++..+.+...+...
T Consensus 76 ~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 109 (219)
T cd06913 76 KNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAA 109 (219)
T ss_pred HHHHHHhcCCCEEEEECCCccCChhHHHHHHHHH
Confidence 3455566678999999999999988877666554
No 70
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.60 E-value=2.2e+02 Score=30.59 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCcEEEEeecc--cccchhHHHHHHHhhhhhcCCceEEEEecCCccccHHHHHHHHh
Q 006408 448 NAVLKKEAAFFGDIVILPFMD--RYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIE 512 (646)
Q Consensus 448 ~~~L~~Eae~ygDII~~df~D--sY~nLtlKtl~~l~wa~~~~~akfvmKvDDDtfVnvd~Ll~~L~ 512 (646)
...|.+=.....-++.+++.+ .+..-+.--.++..|+++.|...+++.+|-|+|.-.|+..+.|+
T Consensus 51 d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 51 DRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred HHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHH
Confidence 345555555555666677654 44443444556778888889999999999999999999998883
No 71
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.18 E-value=1.8e+02 Score=30.72 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=81.5
Q ss_pred EEEeCCCCCHHHHHHHHHHhhcccccCCCceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHh
Q 006408 403 IGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICE 482 (646)
Q Consensus 403 I~V~Sap~~~~rR~aIR~TW~~~~~i~~~~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~ 482 (646)
+.|.|-.+..+|+..+.++-.... + +...||-+.++..+....+..|.. .+ +...+.-...+.--+|-
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~----~-~~f~~~~av~~~~~~~~~~~~~~~-~~------~~~~~~~~ls~gEiGC~ 72 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALG----G-LPFQRFDAVNGKSEDEKDLIAELD-AG------HLLYEGRRLSPGEIGCY 72 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhcc----C-CCceEeeccCccccCHHHHhcccc-ch------hhhhhccccCchhHHHH
Confidence 456777788889999999887543 2 566777777764222122222200 11 11111111112222221
Q ss_pred hhh----h-cC--CceEEEEecCCccccHHHHHHHHhhcC-CCcceEEEeeccCCCcccc----ccceecc-ccCCCCCC
Q 006408 483 FGV----Q-NV--TAAYIMKCDDDTFIRVDAVLKEIEGIF-PKRSLYMGNLNLLHRPLRT----GKWAVTY-EEWPQEVY 549 (646)
Q Consensus 483 wa~----~-~~--~akfvmKvDDDtfVnvd~Ll~~L~~~~-~~~~lY~G~v~~~~~P~R~----sKWyVs~-eeyp~~~Y 549 (646)
-.+ + +. +..|++-..||+.+.-+ ....|+... ..... .|.-.. .+|. .+..+.. ..+-...|
T Consensus 73 lSH~~lw~~~~~~~~~yi~I~EDDV~l~~~-f~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
T COG3306 73 LSHLKLWKKALEENLPYILILEDDVVLGED-FEEFLEDDLKLPVRF-LGDDID---IHRLETFLSPNPLAFNAVFIGRNF 147 (255)
T ss_pred HHHHHHHHHHHhCCCCeEEEeccccccccc-HHHHHHHHHhhhhhc-cchHHH---HHHHHHhcccceeecccccccccc
Confidence 111 1 22 67799999999998544 333343311 11111 122111 0110 0001110 11112222
Q ss_pred ----CCCCCCCeEEeCHHHHHHHHHHhcCCccCC-CCCChHHHHHHH
Q 006408 550 ----PPYANGPGYVISSDIAKFIVLQHGNQSLRL-FKMEDVSMGMWV 591 (646)
Q Consensus 550 ----PpY~~G~GYVLSrdla~~Iv~~~~~~~l~~-f~~EDV~iGi~l 591 (646)
..+.+-+||++|+.+++.+++.... .+. .+.|+.+.--+.
T Consensus 148 ~~~~~~~~gt~gYiis~~aAk~fl~~~~~--~~~~~pvD~~~~~~~~ 192 (255)
T COG3306 148 PLLNSYHLGTAGYIISRKAAKKFLELTES--FKVVLPVDWFMFLEFL 192 (255)
T ss_pred hhhhhcccCccceeecHHHHHHHHHHhhh--cccccChhHHHhhhhc
Confidence 2347889999999999999997422 233 345555444444
No 72
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=24.93 E-value=1.3e+03 Score=28.08 Aligned_cols=156 Identities=12% Similarity=-0.010 Sum_probs=83.0
Q ss_pred ceEEEEEEeeCCChhHHHHHHHHHhhcCcEEEEeecccccchhHHHHHHHhhhhhcC---------CceEEEEecCCccc
Q 006408 432 NVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNV---------TAAYIMKCDDDTFI 502 (646)
Q Consensus 432 ~v~~~FfVG~~~~~~~~~~L~~Eae~ygDII~~df~DsY~nLtlKtl~~l~wa~~~~---------~akfvmKvDDDtfV 502 (646)
+..+.|++. +.+..+...+.+=.+.|.++..+.... ..| +-|.- .++|+.... .++.++-.|-|+.|
T Consensus 93 ~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~~-~g~-~gKa~-aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v 168 (727)
T PRK11234 93 NYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCAR-PGP-TSKAD-CLNNVLDAITQFERSANFAFAGFILHDAEDVI 168 (727)
T ss_pred CeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeCC-CCC-CCHHH-HHHHHHHHHHhhhcccCCcccEEEEEcCCCCC
Confidence 344444433 334444555665567788764433332 112 33544 334443321 34567779999999
Q ss_pred cHHHHHHHHhhcCCCcceEEEeeccCCCcccc-----ccceeccccCC----C-----C--CCCCCCCCCeEEeCHHHHH
Q 006408 503 RVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT-----GKWAVTYEEWP----Q-----E--VYPPYANGPGYVISSDIAK 566 (646)
Q Consensus 503 nvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~-----sKWyVs~eeyp----~-----~--~YPpY~~G~GYVLSrdla~ 566 (646)
..+.|. .+..+.....+.-+... +..|+ ++-|+. +|. . . .-+-.++|.|..+|+.+++
T Consensus 169 ~pd~L~-~~~~l~~~~~~VQ~p~~---p~~~~~~~~~~~~~~~--EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~ 242 (727)
T PRK11234 169 SPMELR-LFNYLVERKDLIQIPVY---PFEREWTHFTSGTYID--EFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVT 242 (727)
T ss_pred ChhHHH-HHHhhcCCCCeEeeccc---CCCccHHHHHHHHHHH--HHHHHhhhhhHHHHHcCCCcccCCceEEEecccHH
Confidence 999986 44444332233222111 11122 121121 111 0 1 1244678999999988777
Q ss_pred HHHHHhcC-CccCCCCCChHHHHHHHHHcCCC
Q 006408 567 FIVLQHGN-QSLRLFKMEDVSMGMWVEQFNST 597 (646)
Q Consensus 567 ~Iv~~~~~-~~l~~f~~EDV~iGi~l~~lgi~ 597 (646)
.+.+.... .-..-.--||.-+|+-+...|..
T Consensus 243 al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~ 274 (727)
T PRK11234 243 ALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMR 274 (727)
T ss_pred HHHHhcCCCCcCCCcchHHHHHHHHHHHCCCE
Confidence 66664201 11123346999999999999976
No 73
>PHA01631 hypothetical protein
Probab=24.13 E-value=1.4e+02 Score=29.79 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=40.8
Q ss_pred cCCceEEEEecCCccccHHHHHHHHhhcCCCcceEEEeeccCCCccccccceeccccCCCCCCCCCCCCCeEEeCHHHHH
Q 006408 487 NVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAK 566 (646)
Q Consensus 487 ~~~akfvmKvDDDtfVnvd~Ll~~L~~~~~~~~lY~G~v~~~~~P~R~sKWyVs~eeyp~~~YPpY~~G~GYVLSrdla~ 566 (646)
+.+-+.++.+|.|++|+.-. ..+ +...++-=+ +|--.+|...+-+||.|.-|++.+..+.
T Consensus 69 ~i~DDi~~iIDSDV~ipn~~--~~~----~~~~v~t~C--------------iPA~~kp~~~v~~FC~sTNf~~pr~~l~ 128 (176)
T PHA01631 69 NIEDDIIAIIDSDLIIPNLR--EII----PNERVFTPC--------------YWLYYDWANEIRPFCSGTNYIFRKSLLP 128 (176)
T ss_pred cCCccEEEEeccceEecCcc--ccc----cCCCcccee--------------eeeeecCCCcEEEEEccccEEeeHHHhH
Confidence 45788899999999986432 111 111122111 1111233455668999999999999999
Q ss_pred HHHHH
Q 006408 567 FIVLQ 571 (646)
Q Consensus 567 ~Iv~~ 571 (646)
.+...
T Consensus 129 ~l~~v 133 (176)
T PHA01631 129 YLEYT 133 (176)
T ss_pred HHHHH
Confidence 98764
No 74
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=21.07 E-value=4.9e+02 Score=28.12 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCCCceEEEEEeCCCCCHHHHHHHHHHhhc----ccccCCCceEEEEEEeeCCC---hhHHHHHHHHHhh---cCcEEEE
Q 006408 395 PARPVHLFIGVLSATNHFAERMAIRKTWMQ----SSKIKSSNVVARFFVALNPR---KEVNAVLKKEAAF---FGDIVIL 464 (646)
Q Consensus 395 p~~~v~LlI~V~Sap~~~~rR~aIR~TW~~----~~~i~~~~v~~~FfVG~~~~---~~~~~~L~~Eae~---ygDII~~ 464 (646)
+..+..|.|||.|..... -..+..|=++ ....+...+.++.+++.... ..+...|..+-.. -|-|.++
T Consensus 48 ~~~~~~L~IGIpTV~R~~--~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 48 PRTGKKLCIGIPTVKREK--ESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCCeEEEEecccccCC--CchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 345566999999976542 2334444432 22223356777777776542 2222333322111 1323333
Q ss_pred eeccc-cc--------------chhHHHHHHHhhhh--hcC--CceEEEEecCCccccHH
Q 006408 465 PFMDR-YE--------------LVVLKTIAICEFGV--QNV--TAAYIMKCDDDTFIRVD 505 (646)
Q Consensus 465 df~Ds-Y~--------------nLtlKtl~~l~wa~--~~~--~akfvmKvDDDtfVnvd 505 (646)
.-..+ |. ...+.+..-+.|+. ..| .++|+|-..||+.....
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~ 185 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPG 185 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechh
Confidence 33322 22 22233333444433 222 68899999999887554
Done!