Query 006409
Match_columns 646
No_of_seqs 390 out of 1495
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 5.5E-40 1.2E-44 375.5 25.9 359 42-409 55-426 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 2.6E-27 5.7E-32 217.6 11.7 107 202-310 3-110 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 3.4E-27 7.3E-32 213.6 11.9 104 203-306 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 4.7E-27 1E-31 212.3 10.9 102 204-305 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 1.4E-26 3E-31 205.7 10.0 95 206-302 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 3E-26 6.5E-31 203.8 9.9 99 205-303 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 4.2E-26 9.1E-31 202.6 9.9 96 206-303 2-97 (97)
8 cd05504 Bromo_Acf1_like Bromod 99.9 1.3E-25 2.8E-30 205.4 12.0 104 202-307 10-113 (115)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 6.7E-26 1.4E-30 202.7 9.8 98 206-303 2-102 (102)
10 cd05507 Bromo_brd8_like Bromod 99.9 1.4E-25 3.1E-30 201.6 11.0 101 203-305 2-102 (104)
11 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.3E-25 2.8E-30 201.0 10.1 98 206-303 2-102 (102)
12 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2E-25 4.4E-30 200.2 11.0 101 202-302 2-102 (103)
13 cd05502 Bromo_tif1_like Bromod 99.9 3.9E-25 8.5E-30 200.3 12.1 102 202-306 2-106 (109)
14 cd05501 Bromo_SP100C_like Brom 99.9 6.3E-25 1.4E-29 196.2 11.7 97 205-306 3-99 (102)
15 cd05510 Bromo_SPT7_like Bromod 99.9 5.4E-25 1.2E-29 200.3 11.0 103 202-306 5-109 (112)
16 cd05508 Bromo_RACK7 Bromodomai 99.9 6.3E-25 1.4E-29 195.8 10.4 97 203-302 2-98 (99)
17 cd05509 Bromo_gcn5_like Bromod 99.9 5.8E-25 1.3E-29 196.3 10.1 99 205-305 2-100 (101)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.1E-24 2.4E-29 196.8 9.5 99 205-305 2-106 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 2.7E-24 5.9E-29 191.4 9.6 92 205-298 2-93 (98)
20 cd05528 Bromo_AAA Bromodomain; 99.9 5.4E-24 1.2E-28 193.9 10.9 102 203-306 2-107 (112)
21 cd05512 Bromo_brd1_like Bromod 99.9 4.5E-24 9.7E-29 190.0 9.5 92 205-298 2-93 (98)
22 cd05511 Bromo_TFIID Bromodomai 99.9 9.5E-24 2.1E-28 192.3 10.6 102 207-310 3-104 (112)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 2.8E-23 6.2E-28 186.3 9.3 97 205-303 1-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 3.1E-23 6.7E-28 186.8 9.5 97 206-304 2-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 6.2E-23 1.3E-27 187.2 10.2 101 205-307 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 2.7E-22 5.9E-27 186.8 12.2 104 200-304 20-126 (128)
27 cd05517 Bromo_polybromo_II Bro 99.9 1E-22 2.2E-27 182.9 8.8 94 206-301 2-101 (103)
28 smart00297 BROMO bromo domain. 99.9 2.7E-22 5.9E-27 179.5 10.8 102 202-305 5-106 (107)
29 cd05520 Bromo_polybromo_III Br 99.9 1.9E-22 4.2E-27 181.1 9.3 92 209-302 5-102 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 2.8E-22 6E-27 180.9 10.3 96 205-302 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 2.6E-22 5.6E-27 180.3 9.2 94 207-302 3-102 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.8 4.5E-21 9.7E-26 172.5 9.5 94 207-302 4-103 (104)
33 PF00439 Bromodomain: Bromodom 99.8 4.2E-21 9.1E-26 164.5 8.5 84 209-294 1-84 (84)
34 cd04369 Bromodomain Bromodomai 99.8 5.8E-21 1.3E-25 166.0 9.0 96 206-303 2-99 (99)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.1E-20 2.4E-25 170.5 10.0 95 205-303 2-102 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 5.1E-20 1.1E-24 166.8 11.0 98 210-307 6-107 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.7 9.7E-18 2.1E-22 151.8 10.5 100 204-307 3-108 (110)
38 COG5076 Transcription factor i 99.7 5.7E-17 1.2E-21 175.9 9.5 105 203-309 141-251 (371)
39 KOG1245 Chromatin remodeling c 99.7 5.5E-17 1.2E-21 197.5 7.4 95 209-306 1306-1400(1404)
40 KOG1472 Histone acetyltransfer 99.4 2.7E-13 5.8E-18 154.7 5.8 101 204-306 606-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 4.5E-13 9.7E-18 122.7 4.3 81 204-284 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.1 7.7E-11 1.7E-15 139.8 8.0 105 201-307 562-666 (1051)
43 KOG0386 Chromatin remodeling c 98.9 1.1E-09 2.3E-14 127.4 7.0 100 207-308 1027-1132(1157)
44 cd05491 Bromo_TBP7_like Bromod 98.9 2.4E-09 5.3E-14 97.9 5.9 40 245-284 63-102 (119)
45 KOG1827 Chromatin remodeling c 98.8 8.4E-09 1.8E-13 116.8 7.6 99 203-303 51-155 (629)
46 KOG0008 Transcription initiati 98.8 6.4E-09 1.4E-13 123.5 6.0 93 209-303 1387-1479(1563)
47 KOG0008 Transcription initiati 98.6 6.5E-08 1.4E-12 115.2 7.4 102 205-308 1262-1363(1563)
48 KOG1474 Transcription initiati 98.6 1.4E-08 3.1E-13 117.6 1.6 92 214-305 2-93 (640)
49 KOG1472 Histone acetyltransfer 98.4 1.6E-07 3.5E-12 108.1 4.6 67 218-286 300-366 (720)
50 KOG1828 IRF-2-binding protein 97.9 1.7E-06 3.8E-11 92.5 -0.2 94 206-301 21-114 (418)
51 KOG1828 IRF-2-binding protein 97.8 1.5E-05 3.2E-10 85.6 3.9 84 211-297 215-298 (418)
52 COG5076 Transcription factor i 96.6 0.00068 1.5E-08 74.2 0.6 88 217-306 276-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.0 0.041 8.8E-07 51.9 5.2 61 246-306 59-119 (131)
54 KOG3116 Predicted C3H1-type Zn 91.0 0.28 6E-06 47.0 4.1 12 533-544 142-153 (177)
55 KOG0644 Uncharacterized conser 89.5 0.35 7.6E-06 57.2 4.1 59 243-301 1050-1108(1113)
56 KOG0732 AAA+-type ATPase conta 84.9 0.44 9.5E-06 58.3 1.6 64 222-285 533-601 (1080)
57 KOG2140 Uncharacterized conser 71.9 2.8 6E-05 47.9 2.6 11 58-68 4-14 (739)
58 PF10500 SR-25: Nuclear RNA-sp 71.5 2.9 6.3E-05 42.8 2.5 8 612-619 199-206 (225)
59 PHA03308 transcriptional regul 71.2 3.1 6.8E-05 48.7 3.0 12 406-417 1193-1204(1463)
60 PF05110 AF-4: AF-4 proto-onco 65.6 7.1 0.00015 49.1 4.7 11 505-515 450-460 (1191)
61 PHA03308 transcriptional regul 64.7 4.5 9.7E-05 47.5 2.5 8 625-632 1353-1360(1463)
62 KOG0644 Uncharacterized conser 57.6 3.3 7.3E-05 49.4 -0.1 69 227-298 88-186 (1113)
63 PRK11546 zraP zinc resistance 56.9 58 0.0013 31.5 8.1 61 580-640 33-102 (143)
64 KOG1827 Chromatin remodeling c 52.0 2.5 5.3E-05 49.4 -2.3 75 223-299 214-288 (629)
65 KOG2130 Phosphatidylserine-spe 49.7 11 0.00024 40.7 2.2 18 260-277 157-174 (407)
66 KOG2140 Uncharacterized conser 47.3 12 0.00027 42.9 2.3 8 269-276 237-244 (739)
67 PF14372 DUF4413: Domain of un 42.8 65 0.0014 28.9 5.8 51 258-308 3-53 (101)
68 KOG2130 Phosphatidylserine-spe 36.1 29 0.00064 37.6 2.8 6 298-303 163-168 (407)
69 PF09802 Sec66: Preprotein tra 35.8 1.3E+02 0.0029 30.4 7.3 39 587-625 64-110 (190)
70 TIGR02606 antidote_CC2985 puta 27.5 78 0.0017 26.6 3.5 26 250-275 12-37 (69)
71 PF11516 DUF3220: Protein of u 26.8 27 0.00058 30.4 0.6 12 596-607 90-101 (106)
72 KOG2357 Uncharacterized conser 25.5 1.5E+02 0.0032 33.4 6.1 22 621-642 407-429 (440)
73 COG1422 Predicted membrane pro 25.4 70 0.0015 32.6 3.3 34 609-642 83-116 (201)
74 PF07218 RAP1: Rhoptry-associa 24.7 1.9E+02 0.0042 33.8 6.9 26 397-422 36-61 (782)
75 PF06698 DUF1192: Protein of u 24.2 1.3E+02 0.0027 24.9 4.0 30 98-127 18-47 (59)
76 PF07218 RAP1: Rhoptry-associa 21.7 2E+02 0.0042 33.8 6.2 16 292-307 5-20 (782)
77 PHA03309 transcriptional regul 21.5 1.2E+02 0.0026 37.0 4.7 8 73-80 1316-1323(2033)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=5.5e-40 Score=375.52 Aligned_cols=359 Identities=32% Similarity=0.447 Sum_probs=235.6
Q ss_pred hhhhhhcccc-cCCCCCCCC-ccccccccccCCccccccccccCCCCcccCccceeeccCCCCHHHHHHHHHHHHHHHHH
Q 006409 42 YRHAVETMAE-SEGFGSSGR-VDTEMTASEDSCAPKRKCISLNIDGYDNFGVPLQVLTLSKMSQTERRSLELKLKTDLEQ 119 (646)
Q Consensus 42 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~~r~~~~~~~~~~~~f~v~~~~~~~s~~s~~e~~~L~~rl~~eLeq 119 (646)
+..+|.+++. +..+...+. |..--.+++....++..|..+.......+.++..++++.+++..++++|+.||+.+|++
T Consensus 55 ~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (640)
T KOG1474|consen 55 CIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQ 134 (640)
T ss_pred hhhhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhhhcccccccc
Confidence 4667777775 554444443 33333578888888999999888888889999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccCcccCCCCccccCCCCCCCC--CccCCCCCccccCCCCCCCCCC-CCCCCCCCCCCCCCCCCC----
Q 006409 120 VRVLQKKVASLSSNVVLSPSSDIRSCNDGQKRP--LLESVGGPSVVLAPKGKKRAPN-GRNGPQTKKGNSGRLEPK---- 192 (646)
Q Consensus 120 vR~l~kki~~~~~~~vlsp~~~~~s~~~~~~~~--~~~s~~~~s~s~~~~~kkr~~~-~~~~~~~kr~~~~r~~~~---- 192 (646)
||.+.++++.....-++++....... .+.... .....-.++. .....+... +.+..+...+ .....+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (640)
T KOG1474|consen 135 VRPLTKAVEFSPEPSVVSPVSPASQP-FKSKNGVKKVADTCVKSY---KSKSEREPSPGQKREGTVAP-NSSRESGDSAA 209 (640)
T ss_pred CCcccccccccccccccCCCCCcccc-cccccchhhhhccccccc---cccCcCCCCccccccccccC-ccccccccccc
Confidence 99999999722221123331100000 000000 0000000000 000000000 0000000000 0000000
Q ss_pred -CCCCCCCCchHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHH
Q 006409 193 -KPAGAASSSNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADV 271 (646)
Q Consensus 193 -k~~~~~~~~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~Dv 271 (646)
............++++|..||..||+|+++|+|+.|||++.+++||||+|||+||||+||++||.++.|.++.+|++||
T Consensus 210 ~~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DV 289 (640)
T KOG1474|consen 210 EEEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADV 289 (640)
T ss_pred cccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHH
Confidence 2223345667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-CCCCCCCcchhhHHhhhcCCCCcccCCCCCccccc
Q 006409 272 RLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKKLPVTVD-MTAVPSRADDMIETETRMGMPPMKKKKVSPKETKI 350 (646)
Q Consensus 272 rLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k~p~~~~-~e~~p~~~~~~~e~~~~~~~P~~kkrK~sp~~~~~ 350 (646)
||||.|||+||++|++||.||..|+++|+.+|+.+..++..... ......... .......+....++..-.....
T Consensus 290 RL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 365 (640)
T KOG1474|consen 290 RLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMAS----SDQIPSNSVEGPRSSSFESRES 365 (640)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc----ccccccccccCcccccchhccc
Confidence 99999999999999999999999999999999987655432100 000000000 0000000001111111111111
Q ss_pred cccccccCCCHHHHHHHHHHHHhhcccChHHHHHHHhhhcCC--CCCCCcEEEEcCCCCHH
Q 006409 351 KAEPVRRVMTNEEKRILSTELEALLEELPESIIDFLKEHSAG--ETGEDELEIDIDALSDD 409 (646)
Q Consensus 351 ~~e~~kr~mT~eEK~kL~~~I~~Lp~E~l~~Iv~IIk~~~~~--~~~~dEIELDIdsL~~e 409 (646)
..++....|+.+|+..+...++.++.+.+.+++..++..... .....++++++..+...
T Consensus 366 ~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 426 (640)
T KOG1474|consen 366 ASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTG 426 (640)
T ss_pred ccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchh
Confidence 233356689999999999999999999999999999888733 33445566665555544
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.6e-27 Score=217.58 Aligned_cols=107 Identities=37% Similarity=0.626 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006409 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...|.+.|..||+.|++|+.+++|..||++. .+||||+||++||||+||++||.+|.|.++.+|..||+|||.||++|
T Consensus 3 ~~~w~~~c~~il~~l~~~~~s~~F~~PVd~~--~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~y 80 (119)
T cd05496 3 ESDWKKQCKELVNLMWDCEDSEPFRQPVDLL--KYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSY 80 (119)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccCCCChh--hcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999976 79999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHhC
Q 006409 282 NPP-QNDVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 282 N~~-~S~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
|++ ++.||.+|..|++.|+++|+.|...+
T Consensus 81 N~~~~s~i~~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 81 TPNKRSRIYSMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 99999999999999999999987654
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.4e-27 Score=213.57 Aligned_cols=104 Identities=37% Similarity=0.580 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006409 203 AMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~-~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
.+|++.|..|+++|+++ +.+|+|..||++...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006409 282 NPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
|+++|.||.+|..|+++|++.++.+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.7e-27 Score=212.29 Aligned_cols=102 Identities=40% Similarity=0.676 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 006409 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (646)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (646)
++.-.+..||..|++|+.+++|..|||+.+.++||||+||++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34444578899999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 006409 284 PQNDVHIMADTLRKYFEVRWKA 305 (646)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~~k~ 305 (646)
++|+||.+|..|++.|++.++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998865
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.4e-26 Score=205.75 Aligned_cols=95 Identities=32% Similarity=0.557 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 006409 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (646)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (646)
+++|.+||+.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++|
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTAD--EAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChh--hcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999965 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006409 286 NDVHIMADTLRKYFEVR 302 (646)
Q Consensus 286 S~V~~~A~~L~~~Fe~~ 302 (646)
+.||.+|..|++.|.+.
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3e-26 Score=203.75 Aligned_cols=99 Identities=66% Similarity=1.179 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
+++.|..||+.|++|+.+++|..||++...++|+||++|++||||.||++||+++.|.++.+|..||+|||.||++||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 37899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 006409 285 QNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~ 303 (646)
+|.+|.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=4.2e-26 Score=202.56 Aligned_cols=96 Identities=41% Similarity=0.766 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 006409 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (646)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (646)
+..|..||..|++|+.+++|..||++. .+|+||++|++||||+||++||++|.|+++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~--~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTK--LVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCcc--ccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 799999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006409 286 NDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~ 303 (646)
+.||.+|..|+++|+..|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.3e-25 Score=205.43 Aligned_cols=104 Identities=36% Similarity=0.696 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006409 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
....+..|..||..|++|+.+++|..||++. ++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~--~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~y 87 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKI--EVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLY 87 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3668899999999999999999999999965 89999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006409 282 NPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|++++.+|.+|..|+++|++.++.+.
T Consensus 88 N~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 88 NPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998763
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.7e-26 Score=202.69 Aligned_cols=98 Identities=50% Similarity=0.901 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcC---CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006409 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
++.|.+||+.|+++ +.+++|..||++...++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999 889999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006409 283 PPQNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~ 303 (646)
+++|.|+.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 10
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.4e-25 Score=201.61 Aligned_cols=101 Identities=33% Similarity=0.463 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006409 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
..|.+.|..|++.|++|+.+++|..||++. .+||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 2 ~~~~~~~~~il~~l~~~~~a~~F~~pV~~~--~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 79 (104)
T cd05507 2 RAWKKAILLVYRTLASHRYASVFLKPVTED--IAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYN 79 (104)
T ss_pred hHHHHHHHHHHHHHHcCCCCHhhcCCCCcc--ccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 468999999999999999999999999974 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006409 283 PPQNDVHIMADTLRKYFEVRWKA 305 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~k~ 305 (646)
++++.||.+|..|++.|...+..
T Consensus 80 ~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 80 SSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999877653
No 11
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.3e-25 Score=201.04 Aligned_cols=98 Identities=47% Similarity=0.898 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcC---CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006409 206 MKQCENLLTRLMSH---QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 206 ~k~c~~IL~~L~~~---~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
++.|.+||..|+++ +.+++|..||++.+..+||||++|++||||++|++||+++.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57999999999995 579999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006409 283 PPQNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~~ 303 (646)
++++.+|.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 12
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2e-25 Score=200.18 Aligned_cols=101 Identities=38% Similarity=0.521 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006409 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...+.+.|.+||+.|++++.+++|..||++.+.++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 006409 282 NPPQNDVHIMADTLRKYFEVR 302 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~ 302 (646)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999874
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3.9e-25 Score=200.28 Aligned_cols=102 Identities=36% Similarity=0.691 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhhhhh
Q 006409 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITS---GQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~---~~Y~s~~eF~~DvrLIf~NA 278 (646)
....+++|.+||..|++|+.+++|..||++ .+|+||++|++||||+||++||+. +.|+++.+|.+||+|||+||
T Consensus 2 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~---~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na 78 (109)
T cd05502 2 SPIDQRKCERLLLELYCHELSLPFHEPVSP---SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNC 78 (109)
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhcCCCCC---CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999996 699999999999999999999998 69999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006409 279 MTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
+.||++++.++.+|..|++.|++.|+.+
T Consensus 79 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 79 YKFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 14
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.3e-25 Score=196.23 Aligned_cols=97 Identities=29% Similarity=0.397 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
.++.|+.||..|+.|+.+++|..+ |. .+||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~ 78 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKD 78 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 466799999999999999999763 33 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 006409 285 QNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
+ .++.+|..|++.|++.|+.+
T Consensus 79 ~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 79 D-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred C-HHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999875
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.4e-25 Score=200.35 Aligned_cols=103 Identities=29% Similarity=0.450 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHcC-CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006409 202 NAMLMKQCENLLTRLMSH-QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~-~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
..++...|..||..|++| +.+++|..||++. .+||||++|++||||+||++||+++.|+++.+|.+||+|||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~--~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKR--EAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChh--hcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999 8999999999976 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-HHHHHHHHHHHHHHHHHHHH
Q 006409 281 YNPPQN-DVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 281 YN~~~S-~V~~~A~~L~~~Fe~~~k~i 306 (646)
||++++ .++.+|..|++.|+..+..|
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999866 67899999999999888765
No 16
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.3e-25 Score=195.79 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006409 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
.++...+..++..|+ |+.+|+|..||++. .+||||.+|++||||+||++||++|.|.++++|.+||+|||.||++||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLE--QFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChh--hCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457778889999999 99999999999975 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006409 283 PPQNDVHIMADTLRKYFEVR 302 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~ 302 (646)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999764
No 17
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.8e-25 Score=196.31 Aligned_cols=99 Identities=38% Similarity=0.652 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
++.+|..|++.|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|..||+|||+||++||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKE--EAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChh--hcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5789999999999999999999999977 69999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 006409 285 QNDVHIMADTLRKYFEVRWKA 305 (646)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~ 305 (646)
++.+|.+|..|++.|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998765
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.1e-24 Score=196.79 Aligned_cols=99 Identities=22% Similarity=0.323 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCC------CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 006409 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~------s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (646)
+.+.|..||+.|+++.. +++|..||+.. .+||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~--~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRK--ELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcc--cCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999976 89999988754 89999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHH
Q 006409 279 MTYNPPQNDVHIMADTLRKYFEVRWKA 305 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~ 305 (646)
+.||++||.||.+|..|+++|++.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998875
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.7e-24 Score=191.35 Aligned_cols=92 Identities=35% Similarity=0.475 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
+...|..||+.|++++.+++|..||+.. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~--~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDF--IAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCcc--ccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999965 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006409 285 QNDVHIMADTLRKY 298 (646)
Q Consensus 285 ~S~V~~~A~~L~~~ 298 (646)
++.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999764
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.90 E-value=5.4e-24 Score=193.86 Aligned_cols=102 Identities=34% Similarity=0.468 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006409 203 AMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
.++...|..|+++|++|+.+++|..||++. .+||||++|++||||+||++||++++|.++.+|.+||+|||.||+.||
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~--~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 79 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEE--EVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYN 79 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999976 799999999999999999999999999999999999999999999999
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHHH
Q 006409 283 PP----QNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 283 ~~----~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
++ |+.|+.+|..|++.|.+++..+
T Consensus 80 ~~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 80 PDRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 99 5799999999999999888753
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=4.5e-24 Score=190.03 Aligned_cols=92 Identities=32% Similarity=0.485 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
+...|+.+|+.|+.|+.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~--~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLS--EVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCcc--ccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5678899999999999999999999976 79999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006409 285 QNDVHIMADTLRKY 298 (646)
Q Consensus 285 ~S~V~~~A~~L~~~ 298 (646)
++.+|.+|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 22
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.5e-24 Score=192.28 Aligned_cols=102 Identities=31% Similarity=0.516 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 006409 207 KQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (646)
Q Consensus 207 k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S 286 (646)
-.+..|+.+|++|+.+++|..||++. .+|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||++++
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~--~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKK--KVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChh--hcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 35689999999999999999999976 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 006409 287 DVHIMADTLRKYFEVRWKAIEKKL 310 (646)
Q Consensus 287 ~V~~~A~~L~~~Fe~~~k~i~~k~ 310 (646)
.+|.+|..|.+.|+..+..++.++
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999887654
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.8e-23 Score=186.32 Aligned_cols=97 Identities=27% Similarity=0.395 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcC------CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 006409 205 LMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~------~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (646)
+++.|..|++.|+++ +.+++|..|++. ..+||||++|++||||+||++||++|.|.++.+|..||+|||.||
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na 78 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSK--KLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANA 78 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCC--CCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 368899999999955 458999999774 489999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHH
Q 006409 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~ 303 (646)
++||++++.+|.+|..|++.|++++
T Consensus 79 ~~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 79 RTYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.1e-23 Score=186.82 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHcC------CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 006409 206 MKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (646)
Q Consensus 206 ~k~c~~IL~~L~~~------~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (646)
+++|..|++.|.++ +.+++|..||+. .++||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~--~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSK--SEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCc--ccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999886 457899999774 4899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 006409 280 TYNPPQNDVHIMADTLRKYFEVRWK 304 (646)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~~~k 304 (646)
+||++||.||.+|..|+++|.+..+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987653
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=6.2e-23 Score=187.22 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 006409 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (646)
..+.|..|++.|+++. .+.+|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~--~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPK--RRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCC--cccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999764 4568998655 6699999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006409 279 MTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
+.||++|+.+|.+|..|+++|++.++++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999988764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.7e-22 Score=186.81 Aligned_cols=104 Identities=28% Similarity=0.405 Sum_probs=98.2
Q ss_pred CchHHHHHHHHHHHHHHH---cCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 006409 200 SSNAMLMKQCENLLTRLM---SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (646)
Q Consensus 200 ~~~~~~~k~c~~IL~~L~---~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (646)
.....+...|..++.+|+ +++.+++|..||++.. .+|+||++|++||||+||++||+++.|+++.+|..||+|||.
T Consensus 20 ~~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 98 (128)
T cd05529 20 HIRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILS 98 (128)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999 8999999999999664 799999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHH
Q 006409 277 NAMTYNPPQNDVHIMADTLRKYFEVRWK 304 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k 304 (646)
||++||++++.++.+|..|++.|...+.
T Consensus 99 Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 99 NAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
No 27
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1e-22 Score=182.88 Aligned_cols=94 Identities=34% Similarity=0.517 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 006409 206 MKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAM 279 (646)
Q Consensus 206 ~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~ 279 (646)
++.|.+|++.|+++. .+++|..+++ +..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~--~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPS--KVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCC--CCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999874 4689999766 55999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHH
Q 006409 280 TYNPPQNDVHIMADTLRKYFEV 301 (646)
Q Consensus 280 ~YN~~~S~V~~~A~~L~~~Fe~ 301 (646)
+||++||.||.+|..|++.|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 28
>smart00297 BROMO bromo domain.
Probab=99.87 E-value=2.7e-22 Score=179.46 Aligned_cols=102 Identities=44% Similarity=0.724 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 006409 202 NAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTY 281 (646)
Q Consensus 202 ~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~Y 281 (646)
...+...|..|+..+.+|+.+++|..||++. .+|+||.+|++||||++|++||++|.|.++.+|.+||++||.||+.|
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~--~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 5 QKKLQSLLKAVLDKLDSHRLSWPFLKPVDRK--EAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhCccchhhccCCChh--hccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999866 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 006409 282 NPPQNDVHIMADTLRKYFEVRWKA 305 (646)
Q Consensus 282 N~~~S~V~~~A~~L~~~Fe~~~k~ 305 (646)
|++++.+|.+|..|...|+..|++
T Consensus 83 n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 83 NGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 29
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=1.9e-22 Score=181.08 Aligned_cols=92 Identities=27% Similarity=0.443 Sum_probs=83.1
Q ss_pred HHHHHHHHHcC------CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 006409 209 CENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYN 282 (646)
Q Consensus 209 c~~IL~~L~~~------~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN 282 (646)
+..|++.|+++ +.+++|..||+. ..+||||++|++||||+||++||+++.|.++.+|+.||+|||.||++||
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~--~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSK--RKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCc--ccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 44566666655 468899998774 4899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006409 283 PPQNDVHIMADTLRKYFEVR 302 (646)
Q Consensus 283 ~~~S~V~~~A~~L~~~Fe~~ 302 (646)
++|+.+|.+|..|+++|+++
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.8e-22 Score=180.94 Aligned_cols=96 Identities=27% Similarity=0.403 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 006409 205 LMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (646)
+.+.|..|++.|..++ .+++|..+++ +..+||||++|++||||.||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~--k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPS--KKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCC--cccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 5567888888888764 4699999766 5699999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHH
Q 006409 279 MTYNPPQNDVHIMADTLRKYFEVR 302 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~ 302 (646)
+.||++||.||.+|..|+++|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999864
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.6e-22 Score=180.30 Aligned_cols=94 Identities=27% Similarity=0.415 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcC------CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006409 207 KQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 207 k~c~~IL~~L~~~------~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
++|..|++.|.++ ..+.+|..+|+. ..+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~--~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSK--KDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCc--ccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5567777777765 467899988774 48999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 006409 281 YNPPQNDVHIMADTLRKYFEVR 302 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~ 302 (646)
||++||.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999863
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=4.5e-21 Score=172.53 Aligned_cols=94 Identities=27% Similarity=0.349 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHc------CCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006409 207 KQCENLLTRLMS------HQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 207 k~c~~IL~~L~~------~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
.++..|++.|++ ++.+++|..+++.. .+||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~--~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKA--REPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCcc--ccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455566666665 45789999988754 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 006409 281 YNPPQNDVHIMADTLRKYFEVR 302 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~ 302 (646)
||++++.+|.+|..|++.|+..
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.84 E-value=4.2e-21 Score=164.49 Aligned_cols=84 Identities=44% Similarity=0.799 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 006409 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (646)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V 288 (646)
|..||+.|++|+.+++|..||++. .+|+|+.+|++||||.+|++||++|.|.++.+|..||++||.||+.||++++.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~--~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPK--EYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTT--TSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChh--hCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 899999999999999999999755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 006409 289 HIMADT 294 (646)
Q Consensus 289 ~~~A~~ 294 (646)
|.+|++
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.84 E-value=5.8e-21 Score=165.96 Aligned_cols=96 Identities=45% Similarity=0.624 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC--CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 006409 206 MKQCENLLTRLMSH--QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (646)
Q Consensus 206 ~k~c~~IL~~L~~~--~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (646)
...|..|+..|+.+ +.+++|..||++. .+|+||.+|++||||.+|+.||.++.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~--~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPK--EAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChh--cCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46899999999999 9999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 006409 284 PQNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~~ 303 (646)
.++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.1e-20 Score=170.52 Aligned_cols=95 Identities=26% Similarity=0.396 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCC------CccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 006409 205 LMKQCENLLTRLMSHQF------GWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNA 278 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~------s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA 278 (646)
+.++|..|++.|++.+. +.+|..++ .+..+||||++|++||||+||++||.+ |.++.+|.+||.|||.||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp--~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLP--LRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCC--ccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 56789999999998744 46888654 466999999999999999999999998 999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHH
Q 006409 279 MTYNPPQNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 279 ~~YN~~~S~V~~~A~~L~~~Fe~~~ 303 (646)
++||++|+.+|.+|..|+++|..++
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998765
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=5.1e-20 Score=166.75 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=86.9
Q ss_pred HHHHHHHHc-CCCCccccccCCc---cccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 006409 210 ENLLTRLMS-HQFGWVFNTPVDV---MKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (646)
Q Consensus 210 ~~IL~~L~~-~~~s~~F~~PVd~---~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (646)
.-++..+.. .+...+|..||.+ .+.++|+||++|++||||+||++||++|.|+++++|.+||.|||+||+.||+++
T Consensus 6 ~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~ 85 (109)
T cd05492 6 KFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGAD 85 (109)
T ss_pred HHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 445555555 4667999999974 444699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 006409 286 NDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 286 S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|.+|.+|..|.......+.+|.
T Consensus 86 s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 86 SEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888774
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.74 E-value=9.7e-18 Score=151.79 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 006409 204 MLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 204 ~~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~N 277 (646)
.+++.+..|+..+++|. .+.+|.+.. . ..|+||.+|+.||||.+|++||.+|.|.++++|..||.|||.|
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP--~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELP--E--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCC--C--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 46788899999999995 366777733 2 4688999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006409 278 AMTYNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 278 A~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
|++||.+||.||.+|.+|+++|.....++.
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998887764
No 38
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.68 E-value=5.7e-17 Score=175.93 Aligned_cols=105 Identities=30% Similarity=0.463 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcC------CCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 006409 203 AMLMKQCENLLTRLMSH------QFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~------~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (646)
..+.+.|..++..+... ...++|..+|+ +..+|+||.||+.||||++|+++|+.+.|+++++|..|+.|||.
T Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~--k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~ 218 (371)
T COG5076 141 ELLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPS--KREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFD 218 (371)
T ss_pred hhHHHHHHHHHHHHHHhhcccccccccccccCCc--cccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34445555554444432 45778887655 77999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 006409 277 NAMTYNPPQNDVHIMADTLRKYFEVRWKAIEKK 309 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~k 309 (646)
||.+||.+++.||.+|..|++.|..++..+...
T Consensus 219 N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 219 NCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhhhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999877544
No 39
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.67 E-value=5.5e-17 Score=197.54 Aligned_cols=95 Identities=40% Similarity=0.850 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 006409 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (646)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V 288 (646)
|..||..|+.|+.+|||++||++. .+||||+||++||||.||+.|+..|.|.++.+|..||.|||.||.+||.. |.|
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~--~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPK--EVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChh--hcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 999999999999999999999977 99999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006409 289 HIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 289 ~~~A~~L~~~Fe~~~k~i 306 (646)
+.....|.++|...|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988653
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=2.7e-13 Score=154.68 Aligned_cols=101 Identities=35% Similarity=0.625 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 006409 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNP 283 (646)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~ 283 (646)
.+......||..|.+|..+|||..||+.. ++||||.+|++||||.||+.+|..+.|.....|++|+.+||.||+.||.
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~--e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKK--EVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccc--cCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 46677889999999999999999999966 9999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 006409 284 PQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 284 ~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
.++..|+.|..|...|...+...
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999998877654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.36 E-value=4.5e-13 Score=122.71 Aligned_cols=81 Identities=23% Similarity=0.195 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCC-------CCCCHHHHHHHHHHhhh
Q 006409 204 MLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSG-------QYSDPLAFAADVRLTFS 276 (646)
Q Consensus 204 ~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~-------~Y~s~~eF~~DvrLIf~ 276 (646)
+.+..|..+|..++.|+.+|+|..||++.+.++||||++||+||||+||+++|..+ .|..-..+.+++..+|.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 45678888888888889999999999998889999999999999999999999997 44445566777777777
Q ss_pred hhcccCCC
Q 006409 277 NAMTYNPP 284 (646)
Q Consensus 277 NA~~YN~~ 284 (646)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 77777763
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.13 E-value=7.7e-11 Score=139.84 Aligned_cols=105 Identities=30% Similarity=0.431 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006409 201 SNAMLMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 201 ~~~~~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
......+.+..++..|...+...+|..|||+. ++|||+++|++||||.|++.++..+.|.++++|.+|+.||..||+.
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~--e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPS--ELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChh--hcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 34567888899999999999999999999977 8999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006409 281 YNPPQNDVHIMADTLRKYFEVRWKAIE 307 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~ 307 (646)
||..+..+|.+|..|++.....+....
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHhcc
Confidence 999999999999999998877766543
No 43
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.93 E-value=1.1e-09 Score=127.39 Aligned_cols=100 Identities=28% Similarity=0.388 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 006409 207 KQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMT 280 (646)
Q Consensus 207 k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~ 280 (646)
+.|..|+....+|. .+.+|.. .|.+..+||||.||++||++..|+++|.++.|.+..+...||.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~--~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLK--LPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhccc--CcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 77888888888664 3678887 456779999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006409 281 YNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (646)
Q Consensus 281 YN~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (646)
||.+||.||.+|..|+.+|......|..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888763
No 44
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.88 E-value=2.4e-09 Score=97.91 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 245 HPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 245 ~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
.||||+||++||.+|.|.++.+|.+||+|||.||++||.+
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 5899999999999999999999999999999999999986
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.79 E-value=8.4e-09 Score=116.78 Aligned_cols=99 Identities=27% Similarity=0.399 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 006409 203 AMLMKQCENLLTRLMSHQ------FGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFS 276 (646)
Q Consensus 203 ~~~~k~c~~IL~~L~~~~------~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~ 276 (646)
.....++..||..+..+. ....|.+ .|.+...|+||.+|..||.|..|++|+..+.|.+++.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~fek--lp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEK--LPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhh--ccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 456677777777777764 3556777 45577999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHH
Q 006409 277 NAMTYNPPQNDVHIMADTLRKYFEVRW 303 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~Fe~~~ 303 (646)
||+.||.+++.+|.+|..|+..|....
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999999998754
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.77 E-value=6.4e-09 Score=123.51 Aligned_cols=93 Identities=28% Similarity=0.496 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHH
Q 006409 209 CENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDV 288 (646)
Q Consensus 209 c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V 288 (646)
...|+.++++-+.+|+|.+||+.. .+|+||.+|++||||.+|.+++..++|.+..+|.+||++|+.||..||+..+.+
T Consensus 1387 ~d~~vs~~~~ipes~~f~~~v~~k--~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1387 LDNIVSQMKEIPESWPFHEPVNKK--RVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred hhhHHHHHHhcchhcccccccchh--hchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccc
Confidence 345566666668899999999976 799999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHH
Q 006409 289 HIMADTLRKYFEVRW 303 (646)
Q Consensus 289 ~~~A~~L~~~Fe~~~ 303 (646)
..-|..+-.+....+
T Consensus 1465 ~~k~~k~~ev~~~~~ 1479 (1563)
T KOG0008|consen 1465 TKKARKIGEVGLANL 1479 (1563)
T ss_pred cHHHHHHHHHHHHHH
Confidence 777766655554443
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.60 E-value=6.5e-08 Score=115.20 Aligned_cols=102 Identities=26% Similarity=0.380 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 006409 205 LMKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPP 284 (646)
Q Consensus 205 ~~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~ 284 (646)
+.-.+..|++++...++..+|..||+.. .++|||.||+.||||.++++.+....|.+-++|..|+.|||.|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k--~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAK--EVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchh--hccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 4556788999999999999999999965 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 006409 285 QNDVHIMADTLRKYFEVRWKAIEK 308 (646)
Q Consensus 285 ~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (646)
-+.+...+..+....-..|.+-+.
T Consensus 1340 ~~~~t~~~q~mls~~~~~~~eked 1363 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKLKEKED 1363 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhhchhHH
Confidence 999999998888776666665433
No 48
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.59 E-value=1.4e-08 Score=117.63 Aligned_cols=92 Identities=34% Similarity=0.651 Sum_probs=85.9
Q ss_pred HHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHH
Q 006409 214 TRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMAD 293 (646)
Q Consensus 214 ~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~ 293 (646)
+.+.+|.++|+|..||+.+.+.+|+||.+|++|||++||..++.++.|.+..+..+|+..+|.||..||..+..|+.++.
T Consensus 2 ~~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~ 81 (640)
T KOG1474|consen 2 KEARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQ 81 (640)
T ss_pred cccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006409 294 TLRKYFEVRWKA 305 (646)
Q Consensus 294 ~L~~~Fe~~~k~ 305 (646)
.++..|......
T Consensus 82 ~~~~~~~~~~~~ 93 (640)
T KOG1474|consen 82 SLEKLFPKKLRS 93 (640)
T ss_pred cchhhccccccc
Confidence 999998755543
No 49
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.43 E-value=1.6e-07 Score=108.13 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=63.2
Q ss_pred cCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCC
Q 006409 218 SHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQN 286 (646)
Q Consensus 218 ~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S 286 (646)
.+.++++|.+||+.. ..|+||+||+.||||.|+.+++..+.|.+.++|..|+.+||.||.+||.+-+
T Consensus 300 ~~~~s~~~~~kvs~~--~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~ 366 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKE--DAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEES 366 (720)
T ss_pred ccccccccccCCChh--hCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccc
Confidence 489999999999966 8999999999999999999999999999999999999999999999998643
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.94 E-value=1.7e-06 Score=92.50 Aligned_cols=94 Identities=26% Similarity=0.228 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCC
Q 006409 206 MKQCENLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQ 285 (646)
Q Consensus 206 ~k~c~~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~ 285 (646)
....+.++.+|-+...-..|.-||.+. ..|+|-+||+.|||+.|++.|++.++|.++.+|..|.+|+..||..||...
T Consensus 21 ~~~~ehhlrkl~sKdp~q~fafplt~~--map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 21 SGDAEHHLRKLPSKDPKQKFAFPLTDK--MAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred hhhHHHHHHhccccChhhhhccccchh--hccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 344566667777776777788888766 789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 006409 286 NDVHIMADTLRKYFEV 301 (646)
Q Consensus 286 S~V~~~A~~L~~~Fe~ 301 (646)
+.++..|..|..+-..
T Consensus 99 Tv~~~aaKrL~~v~~~ 114 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLG 114 (418)
T ss_pred ccccccccccchhhcc
Confidence 9999999988765443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.80 E-value=1.5e-05 Score=85.57 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=74.0
Q ss_pred HHHHHHHcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHH
Q 006409 211 NLLTRLMSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHI 290 (646)
Q Consensus 211 ~IL~~L~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~ 290 (646)
....+|........|+.|+-.. ..|.|.-+|++|+|++|++.+...+.|.| .+|..|+.||+.||++||.+...+|.
T Consensus 215 ~q~~kl~~~~p~~~lnyg~tas--~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yye 291 (418)
T KOG1828|consen 215 LQEDKLNRVDPVAYLNYGPTAS--FAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYE 291 (418)
T ss_pred HHHHHhcccCchhhhcccchhh--hcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHH
Confidence 3344555556678888887655 89999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHH
Q 006409 291 MADTLRK 297 (646)
Q Consensus 291 ~A~~L~~ 297 (646)
+|..+..
T Consensus 292 lank~lh 298 (418)
T KOG1828|consen 292 LANKQLH 298 (418)
T ss_pred HHHhhhh
Confidence 9988776
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.57 E-value=0.00068 Score=74.22 Aligned_cols=88 Identities=31% Similarity=0.516 Sum_probs=79.7
Q ss_pred HcCCCCccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHH
Q 006409 217 MSHQFGWVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLR 296 (646)
Q Consensus 217 ~~~~~s~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~ 296 (646)
..+...|+|..++... ..|+|+++|..+|++.|.+.++..+.|....+|..|..++|+||..||+....++.-+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (371)
T COG5076 276 QAHVGAWPFLRPVSDE--EVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLE 353 (371)
T ss_pred ccccccccccccCCcc--cccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchh
Confidence 4556689999988755 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006409 297 KYFEVRWKAI 306 (646)
Q Consensus 297 ~~Fe~~~k~i 306 (646)
.+|......+
T Consensus 354 ~~~~~~~~~~ 363 (371)
T COG5076 354 DFVIKKTRLI 363 (371)
T ss_pred hhHhhhhhhh
Confidence 9888766543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=94.97 E-value=0.041 Score=51.90 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006409 246 PMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAI 306 (646)
Q Consensus 246 PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i 306 (646)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+..-.+-..-..+.-+|-+.+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8999999999999999999999999999998777655443333333334444554444433
No 54
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=91.02 E-value=0.28 Score=47.01 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=5.5
Q ss_pred hccccCCCcccc
Q 006409 533 ENLVSGANLDEK 544 (646)
Q Consensus 533 ~~~~~~~~~d~~ 544 (646)
..++++.+++..
T Consensus 142 SsSssdSdS~s~ 153 (177)
T KOG3116|consen 142 SSSSSDSDSESA 153 (177)
T ss_pred cCCCCccccccc
Confidence 344444444443
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.49 E-value=0.35 Score=57.19 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=51.5
Q ss_pred cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHH
Q 006409 243 IKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEV 301 (646)
Q Consensus 243 Ik~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~ 301 (646)
---|..|..|+.+|+++.|++.+.|..||..|..||.+|..-+.-+...+..|...|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 45689999999999999999999999999999999999999888777777777666654
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=0.44 Score=58.35 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=55.5
Q ss_pred CccccccCCccccC---CCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHhhhhhcccCCCC
Q 006409 222 GWVFNTPVDVMKLN---IPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAA--DVRLTFSNAMTYNPPQ 285 (646)
Q Consensus 222 s~~F~~PVd~~~~~---~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~--DvrLIf~NA~~YN~~~ 285 (646)
...|..|+.+...- +++|-.+|+.+||+...-.++..+.|.++.+|.. +++|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 55777777643221 5699999999999999999999999999999999 9999999999999964
No 57
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=71.87 E-value=2.8 Score=47.89 Aligned_cols=11 Identities=36% Similarity=0.223 Sum_probs=4.3
Q ss_pred CCCcccccccc
Q 006409 58 SGRVDTEMTAS 68 (646)
Q Consensus 58 ~~~~~~~~~~s 68 (646)
++.-|+|-+.+
T Consensus 4 sv~~dkps~~~ 14 (739)
T KOG2140|consen 4 SVQPDKPSTSS 14 (739)
T ss_pred ccCCCCCCCch
Confidence 33334443333
No 58
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=71.55 E-value=2.9 Score=42.76 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.4
Q ss_pred HHHHHhhh
Q 006409 612 KAREKALE 619 (646)
Q Consensus 612 ka~~k~l~ 619 (646)
+-|.+.++
T Consensus 199 kERHkeIN 206 (225)
T PF10500_consen 199 KERHKEIN 206 (225)
T ss_pred HHHHHHHH
Confidence 34444444
No 59
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=71.24 E-value=3.1 Score=48.70 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHH
Q 006409 406 LSDDTLFALRKL 417 (646)
Q Consensus 406 L~~eTL~eL~~y 417 (646)
|..-||+.|+..
T Consensus 1193 lthvtlrrlrdv 1204 (1463)
T PHA03308 1193 LTHVTLRRLRDV 1204 (1463)
T ss_pred hhhhhHHHHHHH
Confidence 455666666653
No 60
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=65.64 E-value=7.1 Score=49.11 Aligned_cols=11 Identities=82% Similarity=0.733 Sum_probs=4.9
Q ss_pred CCCCCCCCCCC
Q 006409 505 SSSDSDSGSSS 515 (646)
Q Consensus 505 SSSdSdS~sSs 515 (646)
|+|||+|+|||
T Consensus 450 S~SDSESESSS 460 (1191)
T PF05110_consen 450 SSSDSESESSS 460 (1191)
T ss_pred Ccccccccccc
Confidence 33444554444
No 61
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=64.67 E-value=4.5 Score=47.51 Aligned_cols=8 Identities=50% Similarity=0.804 Sum_probs=3.8
Q ss_pred ChHHHHHH
Q 006409 625 DPEKLRIE 632 (646)
Q Consensus 625 dp~kl~~~ 632 (646)
||-|+-||
T Consensus 1353 dpskipqe 1360 (1463)
T PHA03308 1353 DPSKIPQE 1360 (1463)
T ss_pred CcccchHH
Confidence 45554444
No 62
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=57.61 E-value=3.3 Score=49.41 Aligned_cols=69 Identities=13% Similarity=0.129 Sum_probs=53.3
Q ss_pred ccCCccccCCCCcccccCCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHhhh
Q 006409 227 TPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQY--------------S----------DPLA------FAADVRLTFS 276 (646)
Q Consensus 227 ~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y--------------~----------s~~e------F~~DvrLIf~ 276 (646)
-++|.. .+|.|..+...|-+|+|++..|.+..| . ++.+ ..+-+.+|-.
T Consensus 88 ~~~d~~--~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLDKP--IPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcCCC--CCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 345533 789999999999999999999999877 2 3333 6677889999
Q ss_pred hhcccCCCCCHHHHHHHHHHHH
Q 006409 277 NAMTYNPPQNDVHIMADTLRKY 298 (646)
Q Consensus 277 NA~~YN~~~S~V~~~A~~L~~~ 298 (646)
||+.+|.||+ +++-++.+.++
T Consensus 166 at~~~akPgt-mvqkmk~ikrL 186 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRL 186 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHH
Confidence 9999999999 66555544443
No 63
>PRK11546 zraP zinc resistance protein; Provisional
Probab=56.89 E-value=58 Score=31.47 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHhhHHHHHHHHHHHH---------hhhhccCCChHHHHHHHHHHHHHh
Q 006409 580 HEGESAPSERQVSPDKLYRAALLRNRFADTILKAREK---------ALEKGEKRDPEKLRIEREELERRH 640 (646)
Q Consensus 580 ~~~~~~~~~~~~sp~k~~raa~l~~rfad~i~ka~~k---------~l~~~~k~dp~kl~~~~e~le~~~ 640 (646)
..|+....-.||+||+.=-+=-|...|.+-....|++ +|...++-|++|++.-..|+...+
T Consensus 33 ~~G~~~~~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr 102 (143)
T PRK11546 33 GHGMWQQNAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLR 102 (143)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3466666778999999888888999999999888875 344689999998887777766555
No 64
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=52.04 E-value=2.5 Score=49.42 Aligned_cols=75 Identities=8% Similarity=-0.058 Sum_probs=66.0
Q ss_pred ccccccCCccccCCCCcccccCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHH
Q 006409 223 WVFNTPVDVMKLNIPDYFTVIKHPMDLGTIKCKITSGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYF 299 (646)
Q Consensus 223 ~~F~~PVd~~~~~~PDYy~iIk~PMDL~tIkkKL~~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~F 299 (646)
..|..-++ ...+|+||.+++-||.+..+.+++..+.|.....|..|..+.|.|+-.|+.....++..+..|.+.+
T Consensus 214 er~w~~~d--g~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 214 ERLWKLPD--GEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred cccccCcc--cccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 34444333 4579999999999999999999999999999999999999999999999999999999998887643
No 65
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=49.70 E-value=11 Score=40.74 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=8.7
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 006409 260 QYSDPLAFAADVRLTFSN 277 (646)
Q Consensus 260 ~Y~s~~eF~~DvrLIf~N 277 (646)
.|.-+.=|..|+-.+..|
T Consensus 157 dY~VPk~F~dDlF~y~g~ 174 (407)
T KOG2130|consen 157 DYSVPKYFRDDLFQYLGE 174 (407)
T ss_pred hcCcchhhhHHHHHhcCc
Confidence 455555555555444433
No 66
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=47.27 E-value=12 Score=42.88 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q 006409 269 ADVRLTFS 276 (646)
Q Consensus 269 ~DvrLIf~ 276 (646)
.-+.|+|.
T Consensus 237 krLilqf~ 244 (739)
T KOG2140|consen 237 KRLILQFK 244 (739)
T ss_pred HHHHHHHH
Confidence 33344443
No 67
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=42.78 E-value=65 Score=28.86 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006409 258 SGQYSDPLAFAADVRLTFSNAMTYNPPQNDVHIMADTLRKYFEVRWKAIEK 308 (646)
Q Consensus 258 ~~~Y~s~~eF~~DvrLIf~NA~~YN~~~S~V~~~A~~L~~~Fe~~~k~i~~ 308 (646)
...|.|..-|...+..|-.....++..+..+..+|..+...|++.|+.+..
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346888888888888887777777777889999999999999999986643
No 68
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=36.06 E-value=29 Score=37.59 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.5
Q ss_pred HHHHHH
Q 006409 298 YFEVRW 303 (646)
Q Consensus 298 ~Fe~~~ 303 (646)
+|++-|
T Consensus 163 ~F~dDl 168 (407)
T KOG2130|consen 163 YFRDDL 168 (407)
T ss_pred hhhHHH
Confidence 344433
No 69
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=35.78 E-value=1.3e+02 Score=30.36 Aligned_cols=39 Identities=38% Similarity=0.593 Sum_probs=29.8
Q ss_pred CCCCCChhHHHHHHHHhhHHHHH--HHHHHH-----Hhhhh-ccCCC
Q 006409 587 SERQVSPDKLYRAALLRNRFADT--ILKARE-----KALEK-GEKRD 625 (646)
Q Consensus 587 ~~~~~sp~k~~raa~l~~rfad~--i~ka~~-----k~l~~-~~k~d 625 (646)
.+.+-.|++.++|||||.--+|+ |+|-|+ -.|.| |-=||
T Consensus 64 ~k~~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q~GsIGD 110 (190)
T PF09802_consen 64 EKKPKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQNGSIGD 110 (190)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHCCCccH
Confidence 34577899999999999998886 777776 34445 76676
No 70
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=27.55 E-value=78 Score=26.59 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhh
Q 006409 250 GTIKCKITSGQYSDPLAFAADVRLTF 275 (646)
Q Consensus 250 ~tIkkKL~~~~Y~s~~eF~~DvrLIf 275 (646)
..|+..+..|.|.+..++++|.-.+|
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~l 37 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLL 37 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999987766
No 71
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=26.78 E-value=27 Score=30.36 Aligned_cols=12 Identities=50% Similarity=0.650 Sum_probs=6.9
Q ss_pred HHHHHHHhhHHH
Q 006409 596 LYRAALLRNRFA 607 (646)
Q Consensus 596 ~~raa~l~~rfa 607 (646)
.--.||||.|||
T Consensus 90 qeytamlrerfa 101 (106)
T PF11516_consen 90 QEYTAMLRERFA 101 (106)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHHHHhc
Confidence 334566666666
No 72
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.51 E-value=1.5e+02 Score=33.44 Aligned_cols=22 Identities=36% Similarity=0.515 Sum_probs=15.1
Q ss_pred ccCCChHHHHH-HHHHHHHHhhh
Q 006409 621 GEKRDPEKLRI-EREELERRHRE 642 (646)
Q Consensus 621 ~~k~dp~kl~~-~~e~le~~~~~ 642 (646)
-.++||||+|+ |.+|++|+.|+
T Consensus 407 ~a~~d~Ek~rr~EakerkR~~K~ 429 (440)
T KOG2357|consen 407 KASGDPEKQRRKEAKERKRQAKK 429 (440)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHh
Confidence 35689999985 55666665543
No 73
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.40 E-value=70 Score=32.59 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhccCCChHHHHHHHHHHHHHhhh
Q 006409 609 TILKAREKALEKGEKRDPEKLRIEREELERRHRE 642 (646)
Q Consensus 609 ~i~ka~~k~l~~~~k~dp~kl~~~~e~le~~~~~ 642 (646)
-.-|+++++=++||..+-+|||+++.|.-..|+|
T Consensus 83 efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~e 116 (201)
T COG1422 83 EFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRE 116 (201)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666689999999999999999888876
No 74
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=24.73 E-value=1.9e+02 Score=33.78 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=11.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHHHH
Q 006409 397 DELEIDIDALSDDTLFALRKLLDDYL 422 (646)
Q Consensus 397 dEIELDIdsL~~eTL~eL~~yV~~~L 422 (646)
+.=|+++|.+.-=+-..=..|+..|-
T Consensus 36 e~eefn~dd~n~wm~ldd~nflntwt 61 (782)
T PF07218_consen 36 EAEEFNVDDINSWMKLDDANFLNTWT 61 (782)
T ss_pred cccccCcccchhcccccHHHHHHHHh
Confidence 33456666554433323334555443
No 75
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.22 E-value=1.3e+02 Score=24.94 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006409 98 LSKMSQTERRSLELKLKTDLEQVRVLQKKV 127 (646)
Q Consensus 98 ~s~~s~~e~~~L~~rl~~eLeqvR~l~kki 127 (646)
|+.||-.|+.+=+.-|++|++|++....+=
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred chhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999877654
No 76
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=21.66 E-value=2e+02 Score=33.77 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 006409 292 ADTLRKYFEVRWKAIE 307 (646)
Q Consensus 292 A~~L~~~Fe~~~k~i~ 307 (646)
+-.|.-+|-..++.+.
T Consensus 5 ~~sllvlf~alyqnvs 20 (782)
T PF07218_consen 5 ASSLLVLFYALYQNVS 20 (782)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4456666666666553
No 77
>PHA03309 transcriptional regulator ICP4; Provisional
Probab=21.45 E-value=1.2e+02 Score=36.99 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=4.8
Q ss_pred cccccccc
Q 006409 73 APKRKCIS 80 (646)
Q Consensus 73 ~~~r~~~~ 80 (646)
.|.|-||-
T Consensus 1316 rpsrdc~P 1323 (2033)
T PHA03309 1316 RPSRDCFP 1323 (2033)
T ss_pred CcccccCC
Confidence 35666763
Done!