Query 006410
Match_columns 646
No_of_seqs 592 out of 3556
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 22:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 1.6E-80 3.4E-85 604.9 18.2 286 292-601 3-288 (303)
2 KOG0374 Serine/threonine speci 100.0 3.8E-76 8.3E-81 619.7 27.5 297 290-599 7-304 (331)
3 PTZ00480 serine/threonine-prot 100.0 1.4E-71 3.1E-76 583.3 30.7 294 292-601 11-304 (320)
4 KOG0373 Serine/threonine speci 100.0 7.9E-73 1.7E-77 542.5 17.7 285 293-601 7-292 (306)
5 cd07419 MPP_Bsu1_C Arabidopsis 100.0 7.4E-71 1.6E-75 581.1 30.8 303 295-597 1-311 (311)
6 cd07420 MPP_RdgC Drosophila me 100.0 1.2E-70 2.7E-75 577.1 31.6 285 291-595 6-320 (321)
7 PTZ00244 serine/threonine-prot 100.0 3.3E-70 7.3E-75 569.6 29.5 291 290-596 2-292 (294)
8 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 6.9E-70 1.5E-74 565.9 30.3 283 292-598 2-284 (285)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 5.3E-70 1.2E-74 568.8 29.3 290 292-597 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 2.1E-69 4.5E-74 565.4 30.7 285 292-600 3-288 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 3.9E-68 8.5E-73 559.3 30.0 290 288-601 12-307 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 1.5E-67 3.2E-72 553.7 31.8 284 293-599 4-298 (305)
13 smart00156 PP2Ac Protein phosp 100.0 1.8E-67 3.9E-72 545.6 29.8 269 315-597 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 8.6E-65 1.9E-69 540.1 31.7 300 289-598 9-366 (377)
15 KOG0371 Serine/threonine prote 100.0 4.5E-64 9.8E-69 492.6 13.8 285 292-600 20-304 (319)
16 KOG0375 Serine-threonine phosp 100.0 1.2E-63 2.6E-68 507.2 11.9 271 314-597 60-341 (517)
17 KOG0377 Protein serine/threoni 100.0 1.4E-53 3.1E-58 442.6 15.5 284 292-596 121-430 (631)
18 KOG0376 Serine-threonine phosp 100.0 1E-47 2.2E-52 409.4 13.5 273 315-601 183-461 (476)
19 cd00144 MPP_PPP_family phospho 100.0 3.3E-32 7.2E-37 274.3 20.5 218 345-583 1-224 (225)
20 cd07425 MPP_Shelphs Shewanella 99.9 3.1E-23 6.6E-28 207.6 14.5 185 345-568 1-196 (208)
21 PRK13625 bis(5'-nucleosyl)-tet 99.9 9.3E-23 2E-27 209.2 15.7 130 343-474 2-145 (245)
22 cd07422 MPP_ApaH Escherichia c 99.9 6.8E-22 1.5E-26 203.2 9.3 164 344-526 1-173 (257)
23 cd07423 MPP_PrpE Bacillus subt 99.9 3.8E-21 8.2E-26 196.0 14.4 129 343-474 2-142 (234)
24 cd07413 MPP_PA3087 Pseudomonas 99.9 1.2E-20 2.6E-25 190.8 16.9 123 345-472 2-143 (222)
25 PRK00166 apaH diadenosine tetr 99.9 1.6E-20 3.4E-25 195.1 18.1 125 343-480 2-131 (275)
26 TIGR00668 apaH bis(5'-nucleosy 99.8 1.3E-20 2.9E-25 194.1 12.4 128 343-484 2-135 (279)
27 PRK11439 pphA serine/threonine 99.8 9.6E-20 2.1E-24 183.8 12.6 120 342-472 17-146 (218)
28 cd07421 MPP_Rhilphs Rhilph pho 99.8 1.3E-18 2.7E-23 179.7 19.9 82 343-424 3-85 (304)
29 cd07424 MPP_PrpA_PrpB PrpA and 99.8 2.6E-19 5.7E-24 179.1 13.5 147 342-506 1-157 (207)
30 PHA02239 putative protein phos 99.8 1.6E-18 3.4E-23 176.5 15.1 174 343-568 2-218 (235)
31 PRK09968 serine/threonine-spec 99.8 3.3E-18 7.2E-23 172.5 11.8 120 342-472 15-144 (218)
32 KOG0379 Kelch repeat-containin 99.5 8.5E-14 1.8E-18 156.2 13.0 107 3-127 147-254 (482)
33 KOG1230 Protein containing rep 99.4 5.4E-13 1.2E-17 140.3 10.1 120 3-140 106-232 (521)
34 KOG4693 Uncharacterized conser 99.4 5E-13 1.1E-17 133.7 8.7 94 16-127 75-170 (392)
35 PLN02153 epithiospecifier prot 99.4 4.7E-12 1E-16 136.0 14.3 111 3-129 5-116 (341)
36 PLN02193 nitrile-specifier pro 99.4 6.1E-12 1.3E-16 141.0 14.8 110 5-130 151-260 (470)
37 KOG4441 Proteins containing BT 99.4 2.7E-12 5.8E-17 146.7 12.0 104 4-131 310-413 (571)
38 KOG4441 Proteins containing BT 99.4 2.7E-12 5.8E-17 146.6 11.5 110 3-137 357-467 (571)
39 TIGR03548 mutarot_permut cycli 99.3 8.7E-12 1.9E-16 132.9 13.9 105 4-131 97-203 (323)
40 TIGR03548 mutarot_permut cycli 99.3 1.4E-11 3E-16 131.4 14.1 104 5-131 49-156 (323)
41 KOG0379 Kelch repeat-containin 99.3 7.7E-12 1.7E-16 140.5 12.2 106 6-129 99-205 (482)
42 PLN02193 nitrile-specifier pro 99.3 2.4E-11 5.2E-16 136.3 15.0 107 4-129 202-309 (470)
43 KOG4693 Uncharacterized conser 99.3 5.7E-12 1.2E-16 126.2 8.6 117 4-135 166-289 (392)
44 PHA02713 hypothetical protein; 99.3 1.7E-11 3.6E-16 140.2 13.6 101 9-131 284-384 (557)
45 PHA02713 hypothetical protein; 99.3 2.2E-11 4.9E-16 139.1 12.9 101 9-132 332-450 (557)
46 PLN02153 epithiospecifier prot 99.3 6.3E-11 1.4E-15 127.3 14.9 107 5-128 60-173 (341)
47 KOG1230 Protein containing rep 99.2 2.4E-11 5.2E-16 128.1 10.2 112 4-131 163-289 (521)
48 PHA03098 kelch-like protein; P 99.2 7.1E-11 1.5E-15 134.3 12.9 101 8-131 322-423 (534)
49 PHA03098 kelch-like protein; P 99.2 8.4E-11 1.8E-15 133.8 12.7 103 4-130 367-472 (534)
50 PHA02790 Kelch-like protein; P 99.2 6.5E-11 1.4E-15 133.1 11.5 93 3-128 384-476 (480)
51 TIGR03547 muta_rot_YjhT mutatr 99.2 2.5E-10 5.5E-15 122.7 12.9 108 5-132 41-186 (346)
52 PHA02790 Kelch-like protein; P 99.1 4.4E-10 9.5E-15 126.5 13.0 95 9-131 299-393 (480)
53 PF00149 Metallophos: Calcineu 99.1 5.2E-10 1.1E-14 103.8 10.5 162 343-550 2-199 (200)
54 PRK14131 N-acetylneuraminic ac 99.0 1.6E-09 3.5E-14 118.2 12.8 107 5-131 62-206 (376)
55 KOG4152 Host cell transcriptio 99.0 1.5E-09 3.3E-14 116.9 11.0 112 4-131 115-247 (830)
56 TIGR03547 muta_rot_YjhT mutatr 99.0 3.7E-09 7.9E-14 113.7 12.1 106 9-132 97-237 (346)
57 COG0639 ApaH Diadenosine tetra 98.9 1.5E-09 3.2E-14 100.5 7.3 147 420-573 2-155 (155)
58 PLN02772 guanylate kinase 98.8 1.7E-08 3.7E-13 109.0 11.7 90 14-123 19-109 (398)
59 PRK14131 N-acetylneuraminic ac 98.8 1.7E-08 3.6E-13 110.2 11.8 109 5-132 116-258 (376)
60 PF13964 Kelch_6: Kelch motif 98.8 7.8E-09 1.7E-13 79.6 6.5 46 19-67 1-46 (50)
61 KOG4152 Host cell transcriptio 98.8 2.9E-09 6.3E-14 114.7 5.1 106 6-131 18-125 (830)
62 PRK09453 phosphodiesterase; Pr 98.8 3.1E-08 6.7E-13 97.1 9.4 68 343-420 2-77 (182)
63 cd00841 MPP_YfcE Escherichia c 98.7 3.2E-07 7E-12 87.1 15.5 59 343-419 1-59 (155)
64 PF07646 Kelch_2: Kelch motif; 98.7 3.7E-08 8E-13 75.6 6.3 48 19-67 1-48 (49)
65 PF12850 Metallophos_2: Calcin 98.7 3E-07 6.4E-12 86.7 13.4 60 343-420 2-61 (156)
66 PF01344 Kelch_1: Kelch motif; 98.6 4.8E-08 1E-12 73.9 4.5 46 19-67 1-46 (47)
67 TIGR00040 yfcE phosphoesterase 98.6 1.4E-06 3.1E-11 83.2 14.6 61 343-418 2-63 (158)
68 cd07379 MPP_239FB Homo sapiens 98.5 4.1E-07 8.9E-12 84.6 9.9 118 343-555 1-120 (135)
69 PF13418 Kelch_4: Galactose ox 98.5 1.1E-07 2.4E-12 72.7 4.4 46 19-67 1-47 (49)
70 cd07388 MPP_Tt1561 Thermus the 98.5 1.6E-06 3.4E-11 88.0 13.5 70 343-419 6-75 (224)
71 PF13415 Kelch_3: Galactose ox 98.4 5.4E-07 1.2E-11 69.1 6.3 48 29-97 1-49 (49)
72 cd07397 MPP_DevT Myxococcus xa 98.4 2.8E-06 6E-11 86.7 13.1 113 343-474 2-160 (238)
73 cd00838 MPP_superfamily metall 98.4 3.1E-06 6.6E-11 75.9 11.3 117 345-555 1-119 (131)
74 PF13854 Kelch_5: Kelch motif 98.4 7.6E-07 1.6E-11 66.1 5.7 41 16-59 1-42 (42)
75 PF13964 Kelch_6: Kelch motif 98.4 7.6E-07 1.6E-11 68.4 5.5 45 88-132 1-46 (50)
76 PF07646 Kelch_2: Kelch motif; 98.3 1E-06 2.2E-11 67.5 5.6 44 88-131 1-47 (49)
77 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.9E-11 64.8 5.1 38 87-124 3-42 (42)
78 cd07394 MPP_Vps29 Homo sapiens 98.2 7.2E-05 1.6E-09 73.3 15.9 57 344-418 2-64 (178)
79 PF01344 Kelch_1: Kelch motif; 98.1 1.8E-06 3.9E-11 65.1 3.5 44 88-131 1-45 (47)
80 smart00612 Kelch Kelch domain. 98.1 4.4E-06 9.5E-11 62.3 4.9 47 31-99 1-47 (47)
81 COG3055 Uncharacterized protei 98.0 8.6E-06 1.9E-10 85.7 6.1 87 5-110 70-158 (381)
82 PF13418 Kelch_4: Galactose ox 98.0 4.9E-06 1.1E-10 63.5 3.3 42 88-129 1-44 (49)
83 cd07403 MPP_TTHA0053 Thermus t 97.9 0.00015 3.2E-09 67.2 11.5 56 345-417 1-56 (129)
84 cd07392 MPP_PAE1087 Pyrobaculu 97.9 2.7E-05 5.8E-10 75.7 6.7 65 344-420 1-66 (188)
85 KOG0376 Serine-threonine phosp 97.8 5.7E-06 1.2E-10 90.2 0.8 238 314-573 14-299 (476)
86 PRK05340 UDP-2,3-diacylglucosa 97.7 0.0001 2.2E-09 75.7 8.7 69 343-419 2-83 (241)
87 cd07399 MPP_YvnB Bacillus subt 97.7 0.0025 5.5E-08 64.2 18.5 71 526-597 135-213 (214)
88 cd07400 MPP_YydB Bacillus subt 97.7 0.00067 1.5E-08 63.4 13.3 29 527-555 101-129 (144)
89 cd07404 MPP_MS158 Microscilla 97.6 4.3E-05 9.3E-10 73.5 4.2 67 344-419 1-68 (166)
90 PRK11340 phosphodiesterase Yae 97.6 0.00017 3.8E-09 75.3 7.7 69 343-419 51-125 (271)
91 cd07385 MPP_YkuE_C Bacillus su 97.5 0.00018 4E-09 72.1 6.2 69 343-419 3-76 (223)
92 COG0622 Predicted phosphoester 97.4 0.0066 1.4E-07 59.2 16.1 64 343-420 3-66 (172)
93 cd07391 MPP_PF1019 Pyrococcus 97.4 0.00045 9.7E-09 67.1 8.0 44 377-420 44-89 (172)
94 TIGR01854 lipid_A_lpxH UDP-2,3 97.4 0.00042 9.2E-09 70.6 7.4 206 344-587 1-229 (231)
95 KOG2437 Muskelin [Signal trans 97.3 0.00013 2.8E-09 79.6 2.8 101 15-134 256-366 (723)
96 TIGR03729 acc_ester putative p 97.2 0.00065 1.4E-08 69.5 7.2 68 343-419 1-74 (239)
97 cd07390 MPP_AQ1575 Aquifex aeo 97.1 0.0016 3.4E-08 63.1 8.1 40 377-421 45-84 (168)
98 cd07395 MPP_CSTP1 Homo sapiens 97.1 0.035 7.5E-07 57.4 18.6 28 528-555 195-222 (262)
99 KOG2437 Muskelin [Signal trans 97.1 0.00079 1.7E-08 73.6 6.2 111 5-127 298-417 (723)
100 cd00840 MPP_Mre11_N Mre11 nucl 97.1 0.0011 2.4E-08 66.2 6.9 73 343-421 1-91 (223)
101 cd07396 MPP_Nbla03831 Homo sap 97.0 0.0018 3.9E-08 67.4 8.0 73 343-421 2-88 (267)
102 cd00844 MPP_Dbr1_N Dbr1 RNA la 97.0 0.0014 3E-08 68.2 7.0 70 344-419 1-86 (262)
103 PRK04036 DNA polymerase II sma 97.0 0.0025 5.3E-08 72.5 9.4 118 342-471 244-388 (504)
104 TIGR00619 sbcd exonuclease Sbc 97.0 0.002 4.3E-08 66.7 7.5 71 343-419 2-88 (253)
105 cd07398 MPP_YbbF-LpxH Escheric 96.9 0.0024 5.1E-08 63.8 7.0 27 526-552 176-202 (217)
106 PHA02546 47 endonuclease subun 96.8 0.0025 5.4E-08 68.9 7.2 71 343-419 2-89 (340)
107 cd07402 MPP_GpdQ Enterobacter 96.7 0.0048 1E-07 62.6 8.2 69 343-419 1-83 (240)
108 KOG0918 Selenium-binding prote 96.6 0.00022 4.7E-09 76.1 -2.8 209 375-597 48-262 (476)
109 PF13415 Kelch_3: Galactose ox 96.5 0.0031 6.7E-08 48.1 4.0 32 98-129 1-34 (49)
110 PRK10966 exonuclease subunit S 96.5 0.0067 1.5E-07 67.1 8.0 71 343-420 2-88 (407)
111 TIGR00024 SbcD_rel_arch putati 96.5 0.0086 1.9E-07 61.0 7.9 69 342-420 15-103 (225)
112 PRK11148 cyclic 3',5'-adenosin 96.5 0.0088 1.9E-07 62.5 8.2 69 343-419 16-98 (275)
113 cd08165 MPP_MPPE1 human MPPE1 96.4 0.0047 1E-07 59.2 5.3 43 377-419 41-89 (156)
114 cd07393 MPP_DR1119 Deinococcus 96.4 0.008 1.7E-07 61.3 7.2 45 527-573 181-228 (232)
115 cd07386 MPP_DNA_pol_II_small_a 96.4 0.018 3.9E-07 59.0 9.9 42 377-420 38-95 (243)
116 COG2908 Uncharacterized protei 96.4 0.012 2.6E-07 59.7 8.2 196 346-589 2-229 (237)
117 cd07383 MPP_Dcr2 Saccharomyces 96.3 0.013 2.9E-07 58.0 7.9 41 377-417 44-87 (199)
118 cd08163 MPP_Cdc1 Saccharomyces 96.0 0.16 3.4E-06 52.9 14.5 36 514-549 188-226 (257)
119 TIGR00583 mre11 DNA repair pro 96.0 0.02 4.3E-07 63.3 8.1 72 343-420 5-124 (405)
120 COG2129 Predicted phosphoester 95.8 1.1 2.4E-05 45.3 19.0 205 342-587 4-217 (226)
121 PF03089 RAG2: Recombination a 95.8 0.029 6.2E-07 58.1 7.8 79 13-109 81-175 (337)
122 cd07401 MPP_TMEM62_N Homo sapi 95.7 0.031 6.7E-07 57.9 7.9 27 531-557 190-216 (256)
123 COG1407 Predicted ICC-like pho 95.7 0.027 5.9E-07 57.3 7.0 42 377-421 66-112 (235)
124 PLN02772 guanylate kinase 95.6 0.019 4.1E-07 62.8 6.0 42 87-128 23-65 (398)
125 COG1409 Icc Predicted phosphoh 95.5 0.051 1.1E-06 56.2 8.5 74 343-423 2-82 (301)
126 COG0420 SbcD DNA repair exonuc 95.4 0.035 7.5E-07 61.1 7.3 72 343-420 2-89 (390)
127 cd08164 MPP_Ted1 Saccharomyces 95.2 0.058 1.2E-06 53.6 7.4 65 349-418 24-110 (193)
128 COG1408 Predicted phosphohydro 95.2 0.045 9.7E-07 57.7 7.0 70 343-420 46-119 (284)
129 cd07384 MPP_Cdc1_like Saccharo 95.1 0.045 9.7E-07 53.3 6.3 44 377-420 48-101 (171)
130 cd00839 MPP_PAPs purple acid p 95.1 0.028 6.1E-07 58.9 5.2 37 527-563 181-217 (294)
131 cd07380 MPP_CWF19_N Schizosacc 95.0 0.047 1E-06 52.1 5.8 68 345-417 1-68 (150)
132 COG3055 Uncharacterized protei 94.9 0.075 1.6E-06 56.7 7.5 89 15-128 32-127 (381)
133 cd08166 MPP_Cdc1_like_1 unchar 94.8 0.033 7.2E-07 55.4 4.4 42 377-418 45-92 (195)
134 smart00612 Kelch Kelch domain. 94.8 0.032 7E-07 41.0 3.3 31 100-130 1-31 (47)
135 COG1311 HYS2 Archaeal DNA poly 94.3 0.37 8.1E-06 53.6 11.4 189 343-572 227-450 (481)
136 cd00845 MPP_UshA_N_like Escher 93.9 0.12 2.6E-06 53.0 6.4 66 343-418 2-81 (252)
137 COG4186 Predicted phosphoester 92.8 0.46 1E-05 45.3 7.7 42 377-422 48-89 (186)
138 PLN02533 probable purple acid 91.2 0.33 7.1E-06 54.3 5.8 23 528-550 311-333 (427)
139 PF14582 Metallophos_3: Metall 90.9 0.33 7.2E-06 49.2 4.8 73 342-420 6-103 (255)
140 cd07410 MPP_CpdB_N Escherichia 90.5 0.43 9.4E-06 49.8 5.6 21 530-550 208-229 (277)
141 cd07387 MPP_PolD2_C PolD2 (DNA 90.3 20 0.00043 37.4 17.5 178 377-594 45-256 (257)
142 KOG3662 Cell division control 87.4 1.1 2.5E-05 49.2 6.2 42 377-418 96-143 (410)
143 cd07378 MPP_ACP5 Homo sapiens 87.2 1.2 2.7E-05 46.1 6.3 23 528-550 190-212 (277)
144 cd07412 MPP_YhcR_N Bacillus su 85.2 1.3 2.8E-05 46.7 5.3 66 343-418 2-87 (288)
145 cd07408 MPP_SA0022_N Staphyloc 84.8 1.9 4E-05 44.6 6.1 65 343-418 2-81 (257)
146 PF06874 FBPase_2: Firmicute f 82.0 1.4 3E-05 50.6 4.0 69 527-597 507-585 (640)
147 cd07411 MPP_SoxB_N Thermus the 81.3 3.2 7E-05 43.0 6.2 35 378-418 55-94 (264)
148 PF08321 PPP5: PPP5 TPR repeat 79.0 6.3 0.00014 34.7 6.3 43 288-340 53-95 (95)
149 cd00842 MPP_ASMase acid sphing 78.2 4.5 9.7E-05 42.5 6.2 45 377-421 71-124 (296)
150 KOG3325 Membrane coat complex 78.0 8 0.00017 36.8 6.9 104 344-490 3-108 (183)
151 PF07250 Glyoxal_oxid_N: Glyox 76.2 4.6 9.9E-05 41.7 5.4 57 28-108 76-138 (243)
152 PRK09419 bifunctional 2',3'-cy 74.2 4.9 0.00011 50.7 6.0 66 343-418 662-735 (1163)
153 cd07409 MPP_CD73_N CD73 ecto-5 71.6 9.8 0.00021 39.9 6.7 24 527-550 193-217 (281)
154 KOG1432 Predicted DNA repair e 69.3 14 0.0003 39.9 7.0 44 377-420 103-148 (379)
155 PF04042 DNA_pol_E_B: DNA poly 67.4 7.6 0.00016 38.5 4.6 72 344-421 1-93 (209)
156 KOG2476 Uncharacterized conser 65.9 13 0.00027 41.5 6.1 71 341-416 5-75 (528)
157 cd07406 MPP_CG11883_N Drosophi 63.4 14 0.00031 38.2 5.8 57 352-418 21-82 (257)
158 PF07893 DUF1668: Protein of u 61.6 21 0.00046 38.7 7.0 53 3-65 154-215 (342)
159 cd07405 MPP_UshA_N Escherichia 58.3 15 0.00032 38.7 4.9 19 533-551 200-221 (285)
160 KOG2863 RNA lariat debranching 58.2 14 0.00031 39.9 4.7 72 343-420 2-89 (456)
161 TIGR01640 F_box_assoc_1 F-box 55.4 1E+02 0.0022 30.8 10.4 96 3-120 78-174 (230)
162 COG0737 UshA 5'-nucleotidase/2 54.3 17 0.00038 41.5 5.0 71 342-419 27-115 (517)
163 COG3855 Fbp Uncharacterized pr 53.0 16 0.00034 40.7 4.1 39 377-420 193-231 (648)
164 PF07250 Glyoxal_oxid_N: Glyox 52.0 44 0.00095 34.6 7.0 32 8-39 106-138 (243)
165 cd07407 MPP_YHR202W_N Saccharo 51.9 23 0.00049 37.4 5.1 38 377-419 53-97 (282)
166 PTZ00235 DNA polymerase epsilo 51.6 43 0.00093 35.5 6.9 76 342-419 28-122 (291)
167 TIGR00282 metallophosphoestera 49.4 37 0.00081 35.6 6.1 67 343-419 2-71 (266)
168 PF12768 Rax2: Cortical protei 45.0 63 0.0014 34.1 7.0 62 49-129 16-79 (281)
169 COG1768 Predicted phosphohydro 43.4 45 0.00098 32.9 5.1 68 342-420 17-87 (230)
170 cd08162 MPP_PhoA_N Synechococc 43.4 39 0.00085 36.2 5.3 69 344-418 3-90 (313)
171 PF07893 DUF1668: Protein of u 42.7 1.9E+02 0.0041 31.3 10.5 56 26-109 73-128 (342)
172 PRK09419 bifunctional 2',3'-cy 39.1 43 0.00093 42.5 5.5 23 528-550 256-279 (1163)
173 PRK09420 cpdB bifunctional 2', 38.4 54 0.0012 38.8 5.9 68 341-418 25-121 (649)
174 cd07382 MPP_DR1281 Deinococcus 38.1 79 0.0017 32.9 6.4 66 343-418 1-69 (255)
175 KOG3339 Predicted glycosyltran 37.9 1.3E+02 0.0029 29.9 7.4 92 376-472 40-144 (211)
176 TIGR01390 CycNucDiestase 2',3' 36.3 58 0.0013 38.4 5.7 66 343-418 4-98 (626)
177 PRK09558 ushA bifunctional UDP 35.5 46 0.001 38.5 4.7 18 533-550 236-256 (551)
178 TIGR01530 nadN NAD pyrophospha 34.4 81 0.0018 36.5 6.4 37 377-418 52-93 (550)
179 PF09637 Med18: Med18 protein; 33.6 43 0.00094 34.6 3.6 41 527-570 139-179 (250)
180 TIGR01640 F_box_assoc_1 F-box 33.0 4.3E+02 0.0093 26.2 10.8 62 49-127 70-131 (230)
181 PRK05583 ribosomal protein L7A 32.4 40 0.00086 30.1 2.7 68 520-588 14-90 (104)
182 KOG2310 DNA repair exonuclease 31.9 1.3E+02 0.0029 34.5 7.1 53 343-401 15-79 (646)
183 PTZ00422 glideosome-associated 27.5 72 0.0016 35.4 4.2 22 530-551 239-260 (394)
184 PRK11907 bifunctional 2',3'-cy 25.9 1.1E+02 0.0025 37.1 5.9 67 342-418 116-212 (814)
185 KOG3947 Phosphoesterases [Gene 25.8 93 0.002 32.8 4.4 64 343-420 63-127 (305)
186 PF12641 Flavodoxin_3: Flavodo 25.1 2.3E+02 0.0051 27.2 6.8 64 345-411 2-72 (160)
187 PF08268 FBA_3: F-box associat 24.7 5.1E+02 0.011 23.3 8.8 75 26-120 2-77 (129)
188 KOG2679 Purple (tartrate-resis 24.3 46 0.001 35.0 1.9 70 343-419 45-126 (336)
189 TIGR00282 metallophosphoestera 21.5 71 0.0015 33.5 2.7 39 377-419 2-41 (266)
190 PF13570 PQQ_3: PQQ-like domai 21.5 1.5E+02 0.0033 20.9 3.7 26 23-58 15-40 (40)
191 PRK11138 outer membrane biogen 20.9 8.2E+02 0.018 26.5 11.1 74 24-123 64-139 (394)
192 PF03089 RAG2: Recombination a 20.0 4.6E+02 0.0099 28.0 8.0 76 15-108 18-111 (337)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-80 Score=604.94 Aligned_cols=286 Identities=41% Similarity=0.718 Sum_probs=273.0
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 371 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~ 371 (646)
+++.|++|.+.. .+.+.++..||.++.+||.+|++|++++.|++|||||||||+||+.+|+..|-++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 578899998863 578999999999999999999999999999999999999999999999999988876
Q ss_pred CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhh
Q 006410 372 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 451 (646)
Q Consensus 372 ~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 451 (646)
+|+|||||||||.+|+|+++||++||++||++|+|||||||++.++..|||++||.+|||. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999984 47999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 006410 452 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 531 (646)
Q Consensus 452 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~ 531 (646)
++||++|+|+++|||||||+||.+.++++|+.+.|..+++.++ .++|||||||.+ ..||..++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999887 899999999986 459999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCCCC
Q 006410 532 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 601 (646)
Q Consensus 532 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 601 (646)
++||+.||+++|+|+||.|++||++.++++|+|||||||||+.++|.||||.+++++...+++|..++..
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~~ 288 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQE 288 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.8e-76 Score=619.70 Aligned_cols=297 Identities=52% Similarity=0.916 Sum_probs=277.5
Q ss_pred hHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhC-CCC
Q 006410 290 GLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPS 368 (646)
Q Consensus 290 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g-~~~ 368 (646)
..++++|.+++.......+......|+++||.+||..+.++|..+|+++++++||+|||||||||.||+++|...| +|+
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp 86 (331)
T KOG0374|consen 7 LDLDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPP 86 (331)
T ss_pred hhHHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCC
Confidence 3456777777776544344444456899999999999999999999999999999999999999999999999999 887
Q ss_pred CCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhh
Q 006410 369 TAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFN 448 (646)
Q Consensus 369 ~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~ 448 (646)
.. +|||||||||||++|+||++||+++|++||++|++||||||++.+|..|||++||.++|+. ..+|+.|+
T Consensus 87 ~~------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~ 157 (331)
T KOG0374|consen 87 DQ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFN 157 (331)
T ss_pred cc------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHH
Confidence 76 8999999999999999999999999999999999999999999999999999999999964 57999999
Q ss_pred hhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeCh
Q 006410 449 QLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGP 528 (646)
Q Consensus 449 ~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~ 528 (646)
.+|++||++|+|+++|+|+||||+|.+.++++|+.|.||.+.++.+ +++|||||||+. .+.||.+|.||.+ +.||+
T Consensus 158 ~~f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~ 233 (331)
T KOG0374|consen 158 DAFNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGP 233 (331)
T ss_pred HHHhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecH
Confidence 9999999999999999999999999999999999999998887766 999999999986 3789999999999 89999
Q ss_pred hHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCC
Q 006410 529 DRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 599 (646)
Q Consensus 529 ~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~ 599 (646)
+++++||+++++++||||||+|+|||++|++++++||||||+|||.++|+||+|.|++++.+.+++++|.+
T Consensus 234 ~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 234 AVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999953
No 3
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=1.4e-71 Score=583.30 Aligned_cols=294 Identities=47% Similarity=0.860 Sum_probs=275.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 371 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~ 371 (646)
++++|+++++.+.+++. ....|++++|.+||++|.++|++||+++++.+|++|||||||+|.+|.++|+..|+++..
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 68899999988766642 224689999999999999999999999999999999999999999999999999998765
Q ss_pred CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhh
Q 006410 372 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 451 (646)
Q Consensus 372 ~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 451 (646)
+|||||||||||++++||+.+|+++|+.+|.+|++||||||...++..|||+.||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 47999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 006410 452 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 531 (646)
Q Consensus 452 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~ 531 (646)
++||+||+|++++|||||||+|.+.++++|+.+.||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887654 899999999985 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCCCC
Q 006410 532 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 601 (646)
Q Consensus 532 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 601 (646)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 4
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-73 Score=542.48 Aligned_cols=285 Identities=38% Similarity=0.712 Sum_probs=268.6
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCC
Q 006410 293 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 372 (646)
Q Consensus 293 ~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~ 372 (646)
|+.|+..-+.+ .|+++|+..||+.++++|..|.+++.++.|+.|||||||||.||+.+|+..|--|+.
T Consensus 7 d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t-- 74 (306)
T KOG0373|consen 7 DQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT-- 74 (306)
T ss_pred HHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc--
Confidence 55666655443 689999999999999999999999999999999999999999999999998876654
Q ss_pred CceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhc
Q 006410 373 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 452 (646)
Q Consensus 373 ~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 452 (646)
+|||+|||||||.+|+|++.+|+.||.+||.+|.|||||||++.+...|||++||..|||.. ..|+.+.++|+
T Consensus 75 ----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVFD 147 (306)
T KOG0373|consen 75 ----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVFD 147 (306)
T ss_pred ----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999864 79999999999
Q ss_pred cCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHH
Q 006410 453 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVS 532 (646)
Q Consensus 453 ~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~ 532 (646)
.|+++|+|+++|+|||||+||++.++|+|+.|.|..+++..+ .+|||+||||++ ++.|.-++||+| +.||.+++.
T Consensus 148 ~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt~ 222 (306)
T KOG0373|consen 148 FLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVTT 222 (306)
T ss_pred hhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhhH
Confidence 999999999999999999999999999999999999999887 799999999974 788999999999 789999999
Q ss_pred HHHHHcCCeEEEecccccccceEEecCCe-EEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCCCC
Q 006410 533 DFCKRNKLQLIIRAHECVMDGFERFAQGQ-LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 601 (646)
Q Consensus 533 ~fl~~n~l~~IiRgHe~v~~G~~~~~~~~-liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~~~ 601 (646)
+|+..|+|++|+|+||.|++||++.+++| ++|||||||||+.++|.|+||.++.+++-++|+|...|..
T Consensus 223 eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 223 EFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 99999999999999999999999988888 9999999999999999999999999999999999887643
No 5
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=7.4e-71 Score=581.05 Aligned_cols=303 Identities=74% Similarity=1.270 Sum_probs=279.5
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCC--CCC
Q 006410 295 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST--AGD 372 (646)
Q Consensus 295 ~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~--~~~ 372 (646)
+|++|++|+.|+++....+.|+++++.+||++|.++|++||+++++.+|++|||||||||.+|.++|+.+|+++. .++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 478899999999988888899999999999999999999999999999999999999999999999999998864 122
Q ss_pred CceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCC--cchhhhHhhhhh
Q 006410 373 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 450 (646)
Q Consensus 373 ~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~--~~~~~~~~~~~~ 450 (646)
....+|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..||..+|+.. .+..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 223479999999999999999999999999999999999999999999999999999999999762 345799999999
Q ss_pred hccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCC---CCCCc-eee
Q 006410 451 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNA---RGPGL-VTF 526 (646)
Q Consensus 451 f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~---Rg~g~-~~F 526 (646)
|++||++++++++++||||||+|.+.++++|+.+.||...+....+++|+|||||...+...+|.+|. ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999765567888886 99995 789
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecC
Q 006410 527 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 597 (646)
Q Consensus 527 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~ 597 (646)
|++++++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|+|++++.+++++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 6
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.2e-70 Score=577.14 Aligned_cols=285 Identities=33% Similarity=0.587 Sum_probs=255.7
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEccCCCCHHHHHHHHHHhCC
Q 006410 291 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGF 366 (646)
Q Consensus 291 ~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~----pi~VvGDIHG~~~dL~~il~~~g~ 366 (646)
.++++|+.+++.. .|+++++.+||++|.++|++||+++++.. |++|||||||||.+|+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3688999998743 47889999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHh
Q 006410 367 PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTR 446 (646)
Q Consensus 367 ~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~ 446 (646)
|+... +|||||||||||++|+||+.+|++||++||++|++||||||.+.++..|||++||..+|+.. +..+|..
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 79999999999999999999999999999999999999999999999999999999999753 5679999
Q ss_pred hhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCccc-----CC---------------------Cccccccc
Q 006410 447 FNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA---------------------GSIILMDL 500 (646)
Q Consensus 447 ~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~-----~~---------------------~~~~~~dl 500 (646)
++++|++||+||+|++++|||||||++ ..++++|+.++|+... +. ...+++||
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 5799999999884211 10 01367899
Q ss_pred ccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEE
Q 006410 501 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA 580 (646)
Q Consensus 501 LWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga 580 (646)
|||||... ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|+||||||||||..+|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999852 233566689999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcceEEEEEe
Q 006410 581 ILVVGRGLVVVPKLI 595 (646)
Q Consensus 581 ~l~i~~~~~~~~~~~ 595 (646)
+|.|++++.+.+..|
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999998877655
No 7
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=3.3e-70 Score=569.65 Aligned_cols=291 Identities=41% Similarity=0.778 Sum_probs=270.5
Q ss_pred hHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCC
Q 006410 290 GLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST 369 (646)
Q Consensus 290 ~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~ 369 (646)
++++++|.++++...+.. .....++.++|.+||+++.++|++||+++++.+|++|||||||||.+|+++|+..++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~~--~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNRT--QRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCCC--ccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 356889999998765432 233468999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhh
Q 006410 370 AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQ 449 (646)
Q Consensus 370 ~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~ 449 (646)
+ +|||||||||||++|+||+.+|+++|+.+|.++++||||||...++..|||++||..+|+ ..+|..+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999994 469999999
Q ss_pred hhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChh
Q 006410 450 LFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPD 529 (646)
Q Consensus 450 ~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~ 529 (646)
+|+.||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999877654 899999999975 3578999999999 789999
Q ss_pred HHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEec
Q 006410 530 RVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIH 596 (646)
Q Consensus 530 ~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~ 596 (646)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.+++|.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999988764
No 8
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=6.9e-70 Score=565.90 Aligned_cols=283 Identities=42% Similarity=0.754 Sum_probs=266.5
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 371 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~ 371 (646)
++++|+++++.. .|+.+++.+||++|+++|++||+++++.+|++|||||||++.+|.++|+..++++..
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888888642 478999999999999999999999999999999999999999999999999988765
Q ss_pred CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhh
Q 006410 372 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 451 (646)
Q Consensus 372 ~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 451 (646)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||++||..+|+. ..+|..++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 36999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 006410 452 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 531 (646)
Q Consensus 452 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~ 531 (646)
++||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||... .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 7899999999863 68999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCC
Q 006410 532 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 598 (646)
Q Consensus 532 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~ 598 (646)
++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999988874
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=5.3e-70 Score=568.83 Aligned_cols=290 Identities=49% Similarity=0.897 Sum_probs=270.7
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 371 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~ 371 (646)
++++|+.+++.+.++.. ....|+++++.+||++++++|++||+++++.+|++||||||||+.+|.++|+..|+++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRPG--KNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCCc--ccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 46788888887655532 334689999999999999999999999999999999999999999999999999998766
Q ss_pred CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhh
Q 006410 372 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 451 (646)
Q Consensus 372 ~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 451 (646)
+|||||||||||++++|++.+|+++|+.+|.++++||||||.+.++..|||++||..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 46999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 006410 452 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 531 (646)
Q Consensus 452 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~ 531 (646)
++||++|++++++||||||++|.+.++++|+.+.||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999876654 899999999985 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecC
Q 006410 532 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 597 (646)
Q Consensus 532 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~ 597 (646)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998876
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=2.1e-69 Score=565.40 Aligned_cols=285 Identities=41% Similarity=0.769 Sum_probs=265.3
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 371 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~ 371 (646)
++++|+.+++.. .|+++++.+||++|+++|++||+++++.+|++|||||||||.+|.++|+..|.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 477888887642 478999999999999999999999999999999999999999999999999987665
Q ss_pred CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhh
Q 006410 372 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 451 (646)
Q Consensus 372 ~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 451 (646)
+|||||||||||++++||+.+|++||+.+|.+|++||||||.+.++..|||++||..+|+.. .+|..++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999742 5899999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 006410 452 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 531 (646)
Q Consensus 452 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~ 531 (646)
++||++|++++++|||||||+|.+.++++|+.+.||.+.+..+ +++|+|||||.+ ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887665 789999999974 468999999999 68999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecC-CeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCCC
Q 006410 532 SDFCKRNKLQLIIRAHECVMDGFERFAQ-GQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 600 (646)
Q Consensus 532 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~-~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~~ 600 (646)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++.+.++.|.|.+.
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~ 288 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPE 288 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCc
Confidence 9999999999999999999999998665 45999999999999999999999999999999999988654
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=3.9e-68 Score=559.29 Aligned_cols=290 Identities=35% Similarity=0.644 Sum_probs=267.2
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEccCCCCHHHHHHHHHH
Q 006410 288 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDE 363 (646)
Q Consensus 288 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~p----i~VvGDIHG~~~dL~~il~~ 363 (646)
+..+++++++.+.+.+ .|+.+++.+||++|.++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4566889999988743 478899999999999999999999999877 99999999999999999999
Q ss_pred hCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhh
Q 006410 364 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 443 (646)
Q Consensus 364 ~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~ 443 (646)
.|+++..+ +|||||||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..||..+|+ ..+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HHH
Confidence 99986542 799999999999999999999999999999999999999999999999999999999884 469
Q ss_pred hHhhhhhhccCCceEEEcCcEEEecCCc-CCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCC
Q 006410 444 WTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG 522 (646)
Q Consensus 444 ~~~~~~~f~~LPlaa~i~~~il~vHGGi-~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g 522 (646)
|..++++|++||+++++++++||||||| ++...++++|+++.||.+.+..+ +++|+|||||.+ ..+|.+|+||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQP---QPGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCC---CCCCCccCCCCc
Confidence 9999999999999999999999999999 56788999999999998776544 899999999985 358999999999
Q ss_pred ceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcC-cceEEEEEecCCCCC
Q 006410 523 LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR-GLVVVPKLIHPLPPP 601 (646)
Q Consensus 523 ~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~-~~~~~~~~~~~~~~~ 601 (646)
+.||++++++||++||+++||||||++++||+++++++|+||||||||||..+|+||+|.|++ ++.+.++.|.+.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999 899999999876544
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=1.5e-67 Score=553.74 Aligned_cols=284 Identities=37% Similarity=0.646 Sum_probs=259.4
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCC
Q 006410 293 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 372 (646)
Q Consensus 293 ~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~ 372 (646)
+-+++.+.+.. .|+++++.+||++|+++|++||+++++++|++||||||||+.||.++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 45666666543 368999999999999999999999999999999999999999999999999988765
Q ss_pred CceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhc
Q 006410 373 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 452 (646)
Q Consensus 373 ~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 452 (646)
+|||||||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..||..+|+ ..+|..++++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999883 468999999999
Q ss_pred cCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCcc----CCCCCC-CCCCCceeeC
Q 006410 453 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSI----EGLRPN-ARGPGLVTFG 527 (646)
Q Consensus 453 ~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~----~~~~~n-~Rg~g~~~Fg 527 (646)
.||+++++++++|||||||+|.+.++++|++++||.+.+..+ +++|+|||||...+.. .+|.+| .||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998876654 7899999999763321 358776 89999 7899
Q ss_pred hhHHHHHHHHcCCeEEEecccccccceEEecCC------eEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCC
Q 006410 528 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 599 (646)
Q Consensus 528 ~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~------~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~ 599 (646)
++++++||++||+++||||||++++||++++++ +||||||||||||..+|+||+|.|+++. +.++.|.+.+
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~ 298 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSP 298 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCC
Confidence 999999999999999999999999999998886 9999999999999999999999999885 6888887754
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.8e-67 Score=545.60 Aligned_cols=269 Identities=48% Similarity=0.880 Sum_probs=255.1
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHH
Q 006410 315 LDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET 394 (646)
Q Consensus 315 l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~ev 394 (646)
++++++.+||++|+++|++||+++++++|++||||||||+.+|.++|+..+.++.+ +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 36789999999999999999999999999999999999999999999999987665 899999999999999999
Q ss_pred HHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcCCC
Q 006410 395 ITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 474 (646)
Q Consensus 395 l~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~ 474 (646)
+.+|++||+.+|.++++||||||.+.++..|||++||..+|+ ..+|+.+.++|++||++|++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999984 4799999999999999999999999999999999
Q ss_pred CCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccce
Q 006410 475 IHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGF 554 (646)
Q Consensus 475 ~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~ 554 (646)
+.++++|+.+.||.+.+... +++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998776554 899999999974 3578999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecC
Q 006410 555 ERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 597 (646)
Q Consensus 555 ~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~ 597 (646)
+++++++|+|||||||||+..+|+||+|.|++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999998876
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=8.6e-65 Score=540.13 Aligned_cols=300 Identities=33% Similarity=0.587 Sum_probs=258.4
Q ss_pred chHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEccCCCCHHHHHHHHHHh
Q 006410 289 QGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEY 364 (646)
Q Consensus 289 ~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~----~pi~VvGDIHG~~~dL~~il~~~ 364 (646)
.+.++.+|+.+.....--+|......|+.++|.+||++|.++|++||++++++ +|++|||||||++.+|+++|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~~ 88 (377)
T cd07418 9 NEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLEDA 88 (377)
T ss_pred HHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHHh
Confidence 44567788877543211123333446899999999999999999999999998 89999999999999999999999
Q ss_pred CCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhh
Q 006410 365 GFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAW 444 (646)
Q Consensus 365 g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~ 444 (646)
|+++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||.+||..+|+.. +..+|
T Consensus 89 g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l~ 162 (377)
T cd07418 89 GFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHVY 162 (377)
T ss_pred CCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHHH
Confidence 9886542 69999999999999999999999999999999999999999999999999999999999754 45799
Q ss_pred HhhhhhhccCCceEEEcCcEEEecCCc---------------------------CCCCCCHHHhhhccCCc-ccCCCc--
Q 006410 445 TRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS-- 494 (646)
Q Consensus 445 ~~~~~~f~~LPlaa~i~~~il~vHGGi---------------------------~~~~~~l~~I~~i~rp~-~~~~~~-- 494 (646)
+.++++|++||+++++++++||||||| ++.+.++++|+.++||. +.+..+
T Consensus 163 ~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~~ 242 (377)
T cd07418 163 RKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGSN 242 (377)
T ss_pred HHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCcc
Confidence 999999999999999999999999999 44567999999999985 444332
Q ss_pred ccccccccCCCCCCCccCCCCCC-CCCCCceeeChhHHHHHHHHcCCeEEEecccc------------cccceEEecC--
Q 006410 495 IILMDLLWSDPTENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC------------VMDGFERFAQ-- 559 (646)
Q Consensus 495 ~~~~dlLWsDP~~~~~~~~~~~n-~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~------------v~~G~~~~~~-- 559 (646)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||| |++||+++++
T Consensus 243 ~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~~ 318 (377)
T cd07418 243 LIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDVE 318 (377)
T ss_pred ccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccCC
Confidence 2578999999985 3578887 79999 68999999999999999999999996 6899999887
Q ss_pred -CeEEEEeeccccC------CCCCCcEEEEEEcCcc--eEEEEEecCC
Q 006410 560 -GQLITLFSATNYC------GTANNAGAILVVGRGL--VVVPKLIHPL 598 (646)
Q Consensus 560 -~~liTvFSa~ny~------~~~~N~ga~l~i~~~~--~~~~~~~~~~ 598 (646)
++||||||||||| +.++|+||+++++.+- ...++.|...
T Consensus 319 ~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~ 366 (377)
T cd07418 319 SGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAV 366 (377)
T ss_pred CCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeecc
Confidence 9999999999999 5789999999996643 4556666544
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-64 Score=492.63 Aligned_cols=285 Identities=41% Similarity=0.725 Sum_probs=268.1
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 371 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~ 371 (646)
++..|..|.+.+ .+++.++..||+.|+++|++|.+|..++.|++||||+||||+||+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 456677777654 578889999999999999999999999999999999999999999999988887765
Q ss_pred CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhh
Q 006410 372 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 451 (646)
Q Consensus 372 ~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 451 (646)
+|+|+|||||||++|.|++.+|.++|++||++|.+||||||.+.+...|||++||.+|||.. ..|..|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999754 7999999999
Q ss_pred ccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHH
Q 006410 452 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 531 (646)
Q Consensus 452 ~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~ 531 (646)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.+++.++ .+||||||||++ .-||..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888877 688999999975 679999999999 79999999
Q ss_pred HHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecCCCC
Q 006410 532 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 600 (646)
Q Consensus 532 ~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~~~~ 600 (646)
++|-.+||+++|-|+||.+++||.+.+...++|||||||||+.++|.+|+|.+++.....+..|.|.+-
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~ 304 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPR 304 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998553
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1.2e-63 Score=507.16 Aligned_cols=271 Identities=38% Similarity=0.655 Sum_probs=248.8
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHH
Q 006410 314 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 393 (646)
Q Consensus 314 ~l~~~~i~~l~~~~~~il~~ep~~l~l~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~e 393 (646)
.|+++....|+.++..+|++|++++++.+||.|||||||||.||+++|+..|.|.+. +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 378899999999999999999999999999999999999999999999999887665 99999999999999999
Q ss_pred HHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcCC
Q 006410 394 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 473 (646)
Q Consensus 394 vl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~ 473 (646)
|+++|.+||+.||..++|||||||++.+...|.|..||..+|. ..+|+.+.+.|++|||||+.++++||||||+||
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYs----e~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhcc----HHHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 9999999999999999999999999999999999999999994 579999999999999999999999999999999
Q ss_pred CCCCHHHhhhccCCcccCCCcccccccccCCCCCCCc----cCCCCCC-CCCCCceeeChhHHHHHHHHcCCeEEEeccc
Q 006410 474 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS----IEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 548 (646)
Q Consensus 474 ~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~----~~~~~~n-~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe 548 (646)
.+.++++|+++.|+.+++..+ .+||||||||.++.+ .+.|.+| .||++ |.|...++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999877 899999999986422 3467776 79999 6799999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeeccccCCCCCCcEEEEEEcCcceEEEEEecC
Q 006410 549 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 597 (646)
Q Consensus 549 ~v~~G~~~~~~~------~liTvFSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~~ 597 (646)
.+..||..+... .+|||||||||-+.++|++|||..+++. +....|+-
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFnc 341 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNC 341 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCC
Confidence 999999876654 5899999999999999999999987664 33445543
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-53 Score=442.61 Aligned_cols=284 Identities=33% Similarity=0.620 Sum_probs=250.5
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEccCCCCHHHHHHHHHHhCCC
Q 006410 292 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFP 367 (646)
Q Consensus 292 ~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l~----~pi~VvGDIHG~~~dL~~il~~~g~~ 367 (646)
++.+|+.+-..+ .|....+..++.+|+++|++-|++-+++ ..|.||||+||.++||.-+|.+.|+|
T Consensus 121 i~~lieaFk~kq----------~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKKQ----------RLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHhh----------hccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 466666654321 4788889999999999999999999985 46999999999999999999999999
Q ss_pred CCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhh
Q 006410 368 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 447 (646)
Q Consensus 368 ~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~ 447 (646)
+... .|||.||+||||.+|+|||++|+++.+.||..+||-|||||+.++|..|||..|...+|... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 8764 79999999999999999999999999999999999999999999999999999999999876 67888899
Q ss_pred hhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccC---------CcccCC------------CcccccccccCCCC
Q 006410 448 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLER---------PITMDA------------GSIILMDLLWSDPT 506 (646)
Q Consensus 448 ~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~r---------p~~~~~------------~~~~~~dlLWsDP~ 506 (646)
.++|.|||++.+|+.+||+||||||.. ++++-|.+|.| |++... +++.+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999986 67777777655 222110 23457899999998
Q ss_pred CCCccCCCCCC-CCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEc
Q 006410 507 ENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG 585 (646)
Q Consensus 507 ~~~~~~~~~~n-~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~ 585 (646)
. ..|..|| -||.| ++||+|++.+||++++++++||+|||.++|||+.++++|+|||||+||...+.|.||++.+.
T Consensus 344 ~---~~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 A---TMGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred c---ccCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 5 4678888 69999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEec
Q 006410 586 RGLVVVPKLIH 596 (646)
Q Consensus 586 ~~~~~~~~~~~ 596 (646)
+.+...+..+.
T Consensus 420 ~~~~PhfvQY~ 430 (631)
T KOG0377|consen 420 NQLTPHFVQYQ 430 (631)
T ss_pred CCCCchHHHHH
Confidence 88865554443
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1e-47 Score=409.37 Aligned_cols=273 Identities=38% Similarity=0.665 Sum_probs=249.7
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC
Q 006410 315 LDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH 390 (646)
Q Consensus 315 l~~~~i~~l~~~~~~il~~ep~~l~l~~p----i~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~ 390 (646)
+...-...|+..+..++.++|+++++..| +.|+||+||++.|++++|...|.|+... .|+|-||+||||..
T Consensus 183 L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs~ 257 (476)
T KOG0376|consen 183 LPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGSW 257 (476)
T ss_pred cccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeeccc
Confidence 45555778899999999999999998765 8999999999999999999999998753 79999999999999
Q ss_pred hHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCC
Q 006410 391 SLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGG 470 (646)
Q Consensus 391 s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGG 470 (646)
|.|++..+++.|+.+|+++|++|||||+..++..|||.+|+..+|.+ ..+..+.++|.+||++.+|+++++.+|||
T Consensus 258 s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hgg 333 (476)
T KOG0376|consen 258 SVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHGG 333 (476)
T ss_pred ceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEecC
Confidence 99999999999999999999999999999999999999999999954 56777789999999999999999999999
Q ss_pred cCC-CCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccc
Q 006410 471 IGR-SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC 549 (646)
Q Consensus 471 i~~-~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~ 549 (646)
+.. .-.++++|++|.|+...+.. ..++++|||||.. ..|..|+.||.| ..||+|++++||+.|++++|||+||+
T Consensus 334 lf~~~~v~l~d~r~i~r~~~~~~~-~~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe~ 408 (476)
T KOG0376|consen 334 LFSPDGVTLEDFRNIDRFEQPPEE-GLMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHEV 408 (476)
T ss_pred cCCCCCccHHHHHhhhhccCCccc-ccccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhcccc
Confidence 964 55689999999999554444 4899999999986 478999999999 68999999999999999999999999
Q ss_pred cccceEEecCCeEEEEeeccccCCCCCCcEEEEEEc-CcceEEEEEecCCCCC
Q 006410 550 VMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG-RGLVVVPKLIHPLPPP 601 (646)
Q Consensus 550 v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~-~~~~~~~~~~~~~~~~ 601 (646)
.+.||+..++|+|+|||||||||...+|.||++.++ ++++..+..|.++|-.
T Consensus 409 ~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~ 461 (476)
T KOG0376|consen 409 KDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHP 461 (476)
T ss_pred CCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCC
Confidence 999999999999999999999999999999999998 7888888888887644
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=100.00 E-value=3.3e-32 Score=274.28 Aligned_cols=218 Identities=49% Similarity=0.779 Sum_probs=174.6
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhh
Q 006410 345 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 424 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~ 424 (646)
+|||||||++.+|.++|+..+..+.+ .+||||||||||+.+.|++.+|+.++.. |.++++|+||||.+.+...
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999886555 8999999999999999999999999887 8899999999999998887
Q ss_pred cCChHHHH-----HHhCCCcchhhhHhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHHhhhccCCcccCCCccccc
Q 006410 425 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 498 (646)
Q Consensus 425 ~gf~~e~~-----~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~ 498 (646)
+++..+.. ...........+..+..+|..||+++.++. +++|||||+++.....+++. ..+ ..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77664421 011111234577788899999999999986 99999999999866555444 111 123678
Q ss_pred ccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCc
Q 006410 499 DLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNA 578 (646)
Q Consensus 499 dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ 578 (646)
+++|++|.... .....+.|+. |+++.+.|++.++.+.|||||+++..|+.....++++||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997522 1222333333 8999999999999999999999999998767789999999999998877777
Q ss_pred EEEEE
Q 006410 579 GAILV 583 (646)
Q Consensus 579 ga~l~ 583 (646)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77654
No 20
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.90 E-value=3.1e-23 Score=207.63 Aligned_cols=185 Identities=21% Similarity=0.373 Sum_probs=131.4
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCC--ceeeEEEeccccCCCCChHHHHHHHHHHhhc---cCCCeEEecCCcccc
Q 006410 345 KVFGDLHGQFGDLMRLFDEYGFPSTAGDI--TYIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 419 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il~~~g~~~~~~~~--~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~---~P~~v~lLrGNHE~~ 419 (646)
+|||||||++..|.++|+..++......+ ....+||+|||||||+++.||+.+|++|+.. .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864321111 1228999999999999999999999999754 457899999999999
Q ss_pred hhhhhcCChH-HHHHHhCCC--cchhhh---HhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCC
Q 006410 420 DINALFGFRL-ECIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAG 493 (646)
Q Consensus 420 ~i~~~~gf~~-e~~~~~~~~--~~~~~~---~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~ 493 (646)
.++..+.+.. +....+... .....+ ..+.+|+..+|+...++ ++++||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 9875543321 111111000 001111 24478999999999886 58899999922
Q ss_pred cccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeec
Q 006410 494 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSA 568 (646)
Q Consensus 494 ~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa 568 (646)
+|++.-. .+.... .=|.+.+.++|+.++.++||+||+.++.|...+++|+||+|.+.
T Consensus 140 -------~w~r~y~-------~~~~~~----~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYS-------KETSDK----ECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhh-------hhhhhc----cchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 3432110 000000 01235788999999999999999999988767899999999874
No 21
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.89 E-value=9.3e-23 Score=209.20 Aligned_cols=130 Identities=22% Similarity=0.398 Sum_probs=98.8
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCC---CceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccc
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~---~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
+++||||||||++.|.++|+.+++....+. ....++||||||||||++|+|||.+|+++. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 588999999999999999999887421100 011279999999999999999999999885 456899999999999
Q ss_pred hhhhhcCC-------hHHHHHHhCCC---cchhhhHhhhhhhccCCceEEEc-CcEEEecCCcCCC
Q 006410 420 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 474 (646)
Q Consensus 420 ~i~~~~gf-------~~e~~~~~~~~---~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~ 474 (646)
+++...+- ..+....|... ....+++.+.++|+.||++.+++ ++++|||||+.|.
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~ 145 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQD 145 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChH
Confidence 88765431 12333334221 12346678899999999998774 6799999999886
No 22
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.86 E-value=6.8e-22 Score=203.22 Aligned_cols=164 Identities=22% Similarity=0.369 Sum_probs=115.5
Q ss_pred eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhh
Q 006410 344 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 423 (646)
Q Consensus 344 i~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~ 423 (646)
++|||||||++..|.++|+.+++.+..+ .++|||||||||++|+|||.+|++|+ .++++|+||||.+.+..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764332 89999999999999999999999986 58999999999999887
Q ss_pred hcCChHH----HHHHhCCCcchhhhHhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHHhhhccCCccc----CCCc
Q 006410 424 LFGFRLE----CIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITM----DAGS 494 (646)
Q Consensus 424 ~~gf~~e----~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~~I~~i~rp~~~----~~~~ 494 (646)
.+|+... ....+- .......+.+++..+|+...+++ ++++|||||+|.. ++++...+.+.++. +...
T Consensus 72 ~~g~~~~~~~~t~~~~l---~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDIL---NAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHH---hccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 7665311 111110 01123567899999999988865 8999999999984 55554443333221 1111
Q ss_pred ccccccccCCCCCCCccCCCCCCCCCCCceee
Q 006410 495 IILMDLLWSDPTENDSIEGLRPNARGPGLVTF 526 (646)
Q Consensus 495 ~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~F 526 (646)
.++..+.|+.|. .|.++.+|.....|
T Consensus 148 ~~~~~my~~~p~------~W~~~l~g~~r~r~ 173 (257)
T cd07422 148 EFLKNMYGNEPD------RWSDDLTGIDRLRY 173 (257)
T ss_pred HHHHHhhCCCCc------ccCcccCccHHHHH
Confidence 234444555553 26666555443333
No 23
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.86 E-value=3.8e-21 Score=195.99 Aligned_cols=129 Identities=23% Similarity=0.429 Sum_probs=98.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCC----CCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~----~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
+|.||||||||+..|.++|+.+++...+. .....++||||||||||++|.|||.+|++++.. .++++||||||.
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE~ 79 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHDN 79 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcHH
Confidence 78999999999999999999998764320 000127999999999999999999999998754 479999999999
Q ss_pred chhhhhcCCh-------HHHHHHhCCCcchhhhHhhhhhhccCCceEEEc-CcEEEecCCcCCC
Q 006410 419 ADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 474 (646)
Q Consensus 419 ~~i~~~~gf~-------~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~ 474 (646)
+.++...+.. .+....+... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 80 ~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 80 KLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 9887643311 1222333211 2345677889999999998875 4799999998874
No 24
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.85 E-value=1.2e-20 Score=190.81 Aligned_cols=123 Identities=23% Similarity=0.329 Sum_probs=92.3
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCC--CceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhh
Q 006410 345 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 422 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il~~~g~~~~~~~--~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~ 422 (646)
+||||||||++.|.++|+..++....+. ....++|||||||||||+|.|||.+|++++. +.++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~--~~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVD--AGHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhc--CCCEEEEEccCcHHHHH
Confidence 6999999999999999999887532100 0012899999999999999999999999864 34899999999999876
Q ss_pred hhcCCh-----------------HHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcC
Q 006410 423 ALFGFR-----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIG 472 (646)
Q Consensus 423 ~~~gf~-----------------~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~ 472 (646)
...+-. .+..+.++. ....++.+.+||+.||+.... ++++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEE-CCEEEEECCcC
Confidence 543210 112222221 123457788999999999877 56999999986
No 25
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.85 E-value=1.6e-20 Score=195.14 Aligned_cols=125 Identities=22% Similarity=0.404 Sum_probs=98.2
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhh
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 422 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~ 422 (646)
.++|||||||++..|.++|+.+++.+..+ .++|||||||||++|+||+.+|.++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 47999999999999999999998754322 7999999999999999999999987 35799999999999888
Q ss_pred hhcCChH----HHHHHhCCCcchhhhHhhhhhhccCCceEEE-cCcEEEecCCcCCCCCCHHH
Q 006410 423 ALFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIHSVEQ 480 (646)
Q Consensus 423 ~~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHGGi~~~~~~l~~ 480 (646)
..+|+.. +....+-. ....+.+.++++.+|+...+ ++++++||||++|.. ++++
T Consensus 73 ~~~g~~~~~~~~~l~~~l~---~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~-~~~~ 131 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPILE---APDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW-DLAT 131 (275)
T ss_pred hhcCCccccchhHHHHHHc---cccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC-CHHH
Confidence 7777531 11111111 12345678899999999876 568999999999974 4444
No 26
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.83 E-value=1.3e-20 Score=194.13 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=102.0
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhh
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 422 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~ 422 (646)
.++||||||||++.|.++|+++++.+..+ .++||||||||||+|+|||.+|.+++ .++++|+||||.+.+.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 47999999999999999999998765432 79999999999999999999999874 5688999999999999
Q ss_pred hhcCCh-----HHHHHHhCCCcchhhhHhhhhhhccCCceEEEc-CcEEEecCCcCCCCCCHHHhhhc
Q 006410 423 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVEQIEKL 484 (646)
Q Consensus 423 ~~~gf~-----~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~-~~il~vHGGi~~~~~~l~~I~~i 484 (646)
..+|+. ++....+. ....+.+.+|+..+|+....+ .++++|||||+|.. ++++....
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~~ 135 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKEC 135 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHHH
Confidence 888762 22211121 124467789999999997664 46999999999984 56665443
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.81 E-value=9.6e-20 Score=183.75 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=90.1
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 342 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 342 ~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
++++|||||||++..|+++|+.+++.+..+ +++||||||||||+|.|||.+|.. .++++|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998753322 799999999999999999999965 268899999999988
Q ss_pred hhhcCChHHHHHHhCC-------CcchhhhHhhhhhhccCCceEEEc---CcEEEecCCcC
Q 006410 422 NALFGFRLECIERMGE-------NDGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 472 (646)
Q Consensus 422 ~~~~gf~~e~~~~~~~-------~~~~~~~~~~~~~f~~LPlaa~i~---~~il~vHGGi~ 472 (646)
+...+-....+...+. ......+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 7653321111111111 011223455668999999997653 57999999984
No 28
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.81 E-value=1.3e-18 Score=179.71 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=66.2
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCC-CeEEecCCcccchh
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 421 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~-~v~lLrGNHE~~~i 421 (646)
.+++||||||+++.|.++|+.+.............+||||||||||++|.||+.+|++++..+|. .+++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 68999999999999999998764221100011126999999999999999999999999999876 68999999998876
Q ss_pred hhh
Q 006410 422 NAL 424 (646)
Q Consensus 422 ~~~ 424 (646)
...
T Consensus 83 ~fL 85 (304)
T cd07421 83 AFL 85 (304)
T ss_pred hHh
Confidence 544
No 29
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.80 E-value=2.6e-19 Score=179.06 Aligned_cols=147 Identities=27% Similarity=0.368 Sum_probs=104.6
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 342 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 342 ~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
++++|||||||++..|.++++..++.+..+ .++|+|||||||+++.|++.+|.. .++++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 468999999999999999999987643221 799999999999999999999875 368999999999998
Q ss_pred hhhcC--ChHHHHHHhCCCc-----chhhhHhhhhhhccCCceEEEc---CcEEEecCCcCCCCCCHHHhhhccCCcccC
Q 006410 422 NALFG--FRLECIERMGEND-----GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRSIHSVEQIEKLERPITMD 491 (646)
Q Consensus 422 ~~~~g--f~~e~~~~~~~~~-----~~~~~~~~~~~f~~LPlaa~i~---~~il~vHGGi~~~~~~l~~I~~i~rp~~~~ 491 (646)
....+ +..+.+..++... ....++.+.++|+.||+...++ .+++|||||+.+.. ..+.+.. .+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~-~~~~~~~--~~~~-- 144 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDD-WSDGVGA--VTLR-- 144 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcch-hhhhhhc--cccC--
Confidence 87655 3334444443221 1114556788999999998874 37999999996552 1111110 1111
Q ss_pred CCcccccccccCCCC
Q 006410 492 AGSIILMDLLWSDPT 506 (646)
Q Consensus 492 ~~~~~~~dlLWsDP~ 506 (646)
.....+++|++|.
T Consensus 145 --~~~~~~~~w~~~~ 157 (207)
T cd07424 145 --PEDIEELLWSRTR 157 (207)
T ss_pred --cccceeeeeccch
Confidence 1245678998764
No 30
>PHA02239 putative protein phosphatase
Probab=99.78 E-value=1.6e-18 Score=176.49 Aligned_cols=174 Identities=23% Similarity=0.355 Sum_probs=118.3
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCC--CCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~--~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
.+++||||||++..|.++++..... +.+ .+||||||||||++|.||+.+|+.+.. .+.++++|+||||.++
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 4799999999999999999987532 222 799999999999999999999999753 4568999999999987
Q ss_pred hhhhcCC--------------hHHHHHHhCCCcc---------------------------hhhhHhhhhhhccCCceEE
Q 006410 421 INALFGF--------------RLECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 459 (646)
Q Consensus 421 i~~~~gf--------------~~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~LPlaa~ 459 (646)
+....+. ..+.+..|+.... ...+..+..|++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 6543211 1233344532211 0123445668899999988
Q ss_pred EcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcC
Q 006410 460 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNK 539 (646)
Q Consensus 460 i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~ 539 (646)
.+ +++|||||+.|. +|++- +...+|+|.+. . .+.. +|
T Consensus 155 ~~-~~ifVHAGi~p~-----------~~~~~----q~~~~llWiR~-f-------~~~~-------~g------------ 191 (235)
T PHA02239 155 ED-KYIFSHSGGVSW-----------KPVEE----QTIDQLIWSRD-F-------QPRK-------DG------------ 191 (235)
T ss_pred EC-CEEEEeCCCCCC-----------CChhh----CCHhHeEEecc-c-------CCCC-------CC------------
Confidence 75 699999999876 23221 13468899884 1 1111 11
Q ss_pred CeEEEecccccccceEEecCCeEEEEeec
Q 006410 540 LQLIIRAHECVMDGFERFAQGQLITLFSA 568 (646)
Q Consensus 540 l~~IiRgHe~v~~G~~~~~~~~liTvFSa 568 (646)
+.||-||+++..+.... .++.|.|-.-
T Consensus 192 -~~vV~GHTp~~~~~~~~-~~~~I~IDtG 218 (235)
T PHA02239 192 -FTYVCGHTPTDSGEVEI-NGDMLMCDVG 218 (235)
T ss_pred -cEEEECCCCCCCCcccc-cCCEEEeecC
Confidence 25788999887654322 2344666554
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.76 E-value=3.3e-18 Score=172.54 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=86.9
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 342 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 342 ~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
++++|||||||++..|.++|+...+.+..+ .++|||||||||++|.||+.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987543322 799999999999999999999864 368999999999988
Q ss_pred hhhcCChHHHHHHhCCC-------cchhhhHhhhhhhccCCceEEEc---CcEEEecCCcC
Q 006410 422 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 472 (646)
Q Consensus 422 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~LPlaa~i~---~~il~vHGGi~ 472 (646)
....+-....+...+.. ...........+++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 75422111111111100 00112233456889999998763 46899999984
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.51 E-value=8.5e-14 Score=156.17 Aligned_cols=107 Identities=26% Similarity=0.506 Sum_probs=94.6
Q ss_pred CCCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCC
Q 006410 3 RNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDP 82 (646)
Q Consensus 3 r~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~ 82 (646)
.+++|......+.+|.+|.+|++++++++||||||....+.. .+++|+||+++.+|.++. +.++.|+||.+
T Consensus 147 ~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~---~ndl~i~d~~~~~W~~~~--~~g~~P~pR~g---- 217 (482)
T KOG0379|consen 147 STRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDS---LNDLHIYDLETSTWSELD--TQGEAPSPRYG---- 217 (482)
T ss_pred CCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccc---eeeeeeeccccccceecc--cCCCCCCCCCC----
Confidence 468898888888889999999999999999999998765433 455999999999999999 78888765554
Q ss_pred ccccccccceEEEEECCEEEEEcccC-CCCCCCcEEEEeCCCCccc
Q 006410 83 SLELMRRCRHASASIGVRIYIYGGLK-GDILLDDFLVAENSPFQSD 127 (646)
Q Consensus 83 ~~~~~~R~~Haa~~~~~~IYVfGG~~-~~~~l~dl~~~D~~~~~~~ 127 (646)
|+++++++++||+||.+ +..+++|+|.+|+.+++|+
T Consensus 218 ---------H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 218 ---------HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred ---------ceEEEECCeEEEEeccccCCceecceEeeecccceee
Confidence 99999999999999998 7789999999999999998
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.42 E-value=5.4e-13 Score=140.31 Aligned_cols=120 Identities=20% Similarity=0.379 Sum_probs=95.6
Q ss_pred CCCceEEEeCCCCCCCCccceEEEEEC-CEEEEEcCCCCCC--CccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCC
Q 006410 3 RNGQWEWTLAPGVAPSPRYQHAAVFVG-ARLHVTGGALRGG--RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGE 79 (646)
Q Consensus 3 r~g~W~w~~~~g~~P~pR~~Hsav~v~-~~LyV~GG~~~~~--~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~ 79 (646)
+...|.-+..| ..|.||+.|.+|++. +.+|+|||...+- ..+.-..++|+||..|.+|.++. ..+ .|++|++
T Consensus 106 k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~--~~g-~PS~RSG- 180 (521)
T KOG1230|consen 106 KKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE--FGG-GPSPRSG- 180 (521)
T ss_pred cccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeec--cCC-CCCCCcc-
Confidence 45678888877 678899999888886 8999999975322 12333577999999999999988 444 5555555
Q ss_pred CCCccccccccceEEEEECCEEEEEcccCCC----CCCCcEEEEeCCCCccccCCCcccCCCCCc
Q 006410 80 HDPSLELMRRCRHASASIGVRIYIYGGLKGD----ILLDDFLVAENSPFQSDVNSPLLTSERAPT 140 (646)
Q Consensus 80 ~~~~~~~~~R~~Haa~~~~~~IYVfGG~~~~----~~l~dl~~~D~~~~~~~~~~~~~~~~~~~~ 140 (646)
|.++++..+|+||||+... .++||+|+||.++.+|+..+| +++++++-
T Consensus 181 ------------HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpR 232 (521)
T KOG1230|consen 181 ------------HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPR 232 (521)
T ss_pred ------------ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCC
Confidence 9999999999999998753 579999999999999998888 66555443
No 34
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.41 E-value=5e-13 Score=133.72 Aligned_cols=94 Identities=24% Similarity=0.361 Sum_probs=80.5
Q ss_pred CCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEE
Q 006410 16 APSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASA 95 (646)
Q Consensus 16 ~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~ 95 (646)
.|-.||+|+.|.+.+++||+||+++....++. ++.||++|++|.++. ++|-.|+.|-+ |++|
T Consensus 75 VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~---Ly~fDp~t~~W~~p~--v~G~vPgaRDG-------------HsAc 136 (392)
T KOG4693|consen 75 VPYQRYGHTVVEYQDKAYVWGGRNDDEGACNL---LYEFDPETNVWKKPE--VEGFVPGARDG-------------HSAC 136 (392)
T ss_pred cchhhcCceEEEEcceEEEEcCccCcccccce---eeeeccccccccccc--eeeecCCccCC-------------ceee
Confidence 35679999999999999999999875544444 999999999999988 88877765555 9999
Q ss_pred EECCEEEEEcccCCC--CCCCcEEEEeCCCCccc
Q 006410 96 SIGVRIYIYGGLKGD--ILLDDFLVAENSPFQSD 127 (646)
Q Consensus 96 ~~~~~IYVfGG~~~~--~~l~dl~~~D~~~~~~~ 127 (646)
++++.+|||||+..+ ...+|++++|..+++|.
T Consensus 137 V~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 137 VWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EECcEEEEecChHHHHHhhhccceeEeccceeee
Confidence 999999999999764 56789999999998876
No 35
>PLN02153 epithiospecifier protein
Probab=99.37 E-value=4.7e-12 Score=136.02 Aligned_cols=111 Identities=22% Similarity=0.350 Sum_probs=85.2
Q ss_pred CCCceEEEeCC-CCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCC
Q 006410 3 RNGQWEWTLAP-GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHD 81 (646)
Q Consensus 3 r~g~W~w~~~~-g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~ 81 (646)
..++|.-+... +.+|.||.+|++++++++|||+||....... ..+++++||+.+++|..++++...++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~--~~~~~~~yd~~~~~W~~~~~~~~~p~--------- 73 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEH--IDKDLYVFDFNTHTWSIAPANGDVPR--------- 73 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCc--eeCcEEEEECCCCEEEEcCccCCCCC---------
Confidence 35678766553 4579999999999999999999998532211 13469999999999998875411111
Q ss_pred CccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccC
Q 006410 82 PSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVN 129 (646)
Q Consensus 82 ~~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~ 129 (646)
..+.+|++++++++||||||.++...++++++||..+.+|...
T Consensus 74 -----~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~ 116 (341)
T PLN02153 74 -----ISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFL 116 (341)
T ss_pred -----CccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEe
Confidence 1244699999999999999998877889999999998777643
No 36
>PLN02193 nitrile-specifier protein
Probab=99.36 E-value=6.1e-12 Score=141.04 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=86.6
Q ss_pred CceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCcc
Q 006410 5 GQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSL 84 (646)
Q Consensus 5 g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~ 84 (646)
++|..+...+.+|.||++|++++++++|||+||....... ..+++|+||+++++|..++.+ +..|.
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~--~~~~v~~yD~~~~~W~~~~~~--g~~P~---------- 216 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQP--IDKHLYVFDLETRTWSISPAT--GDVPH---------- 216 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCC--eeCcEEEEECCCCEEEeCCCC--CCCCC----------
Confidence 6788776656789999999999999999999997532211 124599999999999987632 22221
Q ss_pred ccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccCC
Q 006410 85 ELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNS 130 (646)
Q Consensus 85 ~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~ 130 (646)
.+|..|++++++++||||||..+...++++++||..+.+|....
T Consensus 217 --~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~ 260 (470)
T PLN02193 217 --LSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLT 260 (470)
T ss_pred --CcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcC
Confidence 13567999999999999999988788999999999998887543
No 37
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.36 E-value=2.7e-12 Score=146.66 Aligned_cols=104 Identities=20% Similarity=0.350 Sum_probs=90.4
Q ss_pred CCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCc
Q 006410 4 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPS 83 (646)
Q Consensus 4 ~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~ 83 (646)
++.|.+.. .+|.+|.+|++++++++|||+||.+.+ ...++++++||+.+++|..+++|
T Consensus 310 ~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~---~~~l~~ve~YD~~~~~W~~~a~M---------------- 367 (571)
T KOG4441|consen 310 TNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSG---SDRLSSVERYDPRTNQWTPVAPM---------------- 367 (571)
T ss_pred cCcEeecC---CCCcccccccEEEECCEEEEEccccCC---CcccceEEEecCCCCceeccCCc----------------
Confidence 35565554 689999999999999999999999741 23467799999999999999999
Q ss_pred cccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccCCC
Q 006410 84 LELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 84 ~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
..+|+.|++++++|+||+.||.++...++++++||..+-+|....+
T Consensus 368 --~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~ 413 (571)
T KOG4441|consen 368 --NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP 413 (571)
T ss_pred --cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC
Confidence 6789999999999999999999999999999999999988875444
No 38
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.35 E-value=2.7e-12 Score=146.63 Aligned_cols=110 Identities=23% Similarity=0.350 Sum_probs=93.0
Q ss_pred CCCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCC
Q 006410 3 RNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDP 82 (646)
Q Consensus 3 r~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~ 82 (646)
+.++| ...+ +|+.+|..|+++++++.||++||+++.. .++++++||+.+++|..+++|
T Consensus 357 ~~~~W--~~~a-~M~~~R~~~~v~~l~g~iYavGG~dg~~----~l~svE~YDp~~~~W~~va~m--------------- 414 (571)
T KOG4441|consen 357 RTNQW--TPVA-PMNTKRSDFGVAVLDGKLYAVGGFDGEK----SLNSVECYDPVTNKWTPVAPM--------------- 414 (571)
T ss_pred CCCce--eccC-CccCccccceeEEECCEEEEEecccccc----ccccEEEecCCCCcccccCCC---------------
Confidence 34555 4454 7899999999999999999999997533 366799999999999999988
Q ss_pred ccccccccceEEEEECCEEEEEcccCCCC-CCCcEEEEeCCCCccccCCCcccCCC
Q 006410 83 SLELMRRCRHASASIGVRIYIYGGLKGDI-LLDDFLVAENSPFQSDVNSPLLTSER 137 (646)
Q Consensus 83 ~~~~~~R~~Haa~~~~~~IYVfGG~~~~~-~l~dl~~~D~~~~~~~~~~~~~~~~~ 137 (646)
..+|++|++++++++|||+||.++.. .++++++||..+-.|....+++....
T Consensus 415 ---~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 415 ---LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred ---CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 55888999999999999999999987 99999999999888887666554443
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.34 E-value=8.7e-12 Score=132.91 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred CCce--EEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCC
Q 006410 4 NGQW--EWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHD 81 (646)
Q Consensus 4 ~g~W--~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~ 81 (646)
+.+| .|...+ ++|.+|..|++++++++|||+||..... ..+++++||+.+++|..++++.
T Consensus 97 ~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~p------------- 158 (323)
T TIGR03548 97 ESKEELICETIG-NLPFTFENGSACYKDGTLYVGGGNRNGK----PSNKSYLFNLETQEWFELPDFP------------- 158 (323)
T ss_pred CCceeeeeeEcC-CCCcCccCceEEEECCEEEEEeCcCCCc----cCceEEEEcCCCCCeeECCCCC-------------
Confidence 4566 466665 7899999999999999999999975432 1466999999999999988651
Q ss_pred CccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccCCC
Q 006410 82 PSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 82 ~~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
..+|..|++++++++|||+||.++.. ..++++||..+-+|....+
T Consensus 159 ----~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 159 ----GEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred ----CCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCC
Confidence 12577799999999999999987643 4678999999888876544
No 40
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.32 E-value=1.4e-11 Score=131.35 Aligned_cols=104 Identities=12% Similarity=0.011 Sum_probs=83.7
Q ss_pred CceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcE----EEccCCcCCCCCCCCCCCC
Q 006410 5 GQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVW----LDRNGLVTSSRTSKGHGEH 80 (646)
Q Consensus 5 g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W----~~~~~~~~~~~p~~r~~~~ 80 (646)
..|+|...+ .+|.+|..|++++++++|||+||..... .++++++||+.+++| ..++++
T Consensus 49 ~~~~W~~~~-~lp~~r~~~~~~~~~~~lyviGG~~~~~----~~~~v~~~d~~~~~w~~~~~~~~~l------------- 110 (323)
T TIGR03548 49 SNLKWVKDG-QLPYEAAYGASVSVENGIYYIGGSNSSE----RFSSVYRITLDESKEELICETIGNL------------- 110 (323)
T ss_pred CceeEEEcc-cCCccccceEEEEECCEEEEEcCCCCCC----CceeEEEEEEcCCceeeeeeEcCCC-------------
Confidence 356788876 7899998888899999999999986432 256799999999998 445544
Q ss_pred CCccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccCCC
Q 006410 81 DPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 81 ~~~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
+.+|+.|++++++++|||+||......++++++||..+.+|+...+
T Consensus 111 -----p~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 156 (323)
T TIGR03548 111 -----PFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD 156 (323)
T ss_pred -----CcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC
Confidence 3367779999999999999998766678999999999888875543
No 41
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.32 E-value=7.7e-12 Score=140.47 Aligned_cols=106 Identities=25% Similarity=0.422 Sum_probs=87.8
Q ss_pred ceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccc
Q 006410 6 QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLE 85 (646)
Q Consensus 6 ~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~ 85 (646)
.|.-..+.|..|.+|++|++++++++||+|||....... ...++.||+.|++|..+. ..+..|.
T Consensus 99 ~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~---~~~l~~~d~~t~~W~~l~--~~~~~P~----------- 162 (482)
T KOG0379|consen 99 LWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRN---LNELHSLDLSTRTWSLLS--PTGDPPP----------- 162 (482)
T ss_pred ccccccccCCCCCcccceeEEEECCeEEEEccccCCCCC---hhheEeccCCCCcEEEec--CcCCCCC-----------
Confidence 455555558889999999999999999999998753333 455999999999999988 5555444
Q ss_pred cccccceEEEEECCEEEEEcccCCCC-CCCcEEEEeCCCCccccC
Q 006410 86 LMRRCRHASASIGVRIYIYGGLKGDI-LLDDFLVAENSPFQSDVN 129 (646)
Q Consensus 86 ~~~R~~Haa~~~~~~IYVfGG~~~~~-~l~dl~~~D~~~~~~~~~ 129 (646)
+|.+|++++++++||||||.+... .++|+|+||+.+.+|+..
T Consensus 163 --~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~ 205 (482)
T KOG0379|consen 163 --PRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSEL 205 (482)
T ss_pred --CcccceEEEECCEEEEECCccCcccceeeeeeeccccccceec
Confidence 555599999999999999998876 899999999999887743
No 42
>PLN02193 nitrile-specifier protein
Probab=99.30 E-value=2.4e-11 Score=136.29 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=83.4
Q ss_pred CCceEEEeCCCCCCC-CccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCC
Q 006410 4 NGQWEWTLAPGVAPS-PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDP 82 (646)
Q Consensus 4 ~g~W~w~~~~g~~P~-pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~ 82 (646)
+.+|+.....+.+|. +|.+|++++++++||||||..... .++++|+||+.+++|..++++.. .|
T Consensus 202 ~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~----~~ndv~~yD~~t~~W~~l~~~~~--~P--------- 266 (470)
T PLN02193 202 TRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR----QYNGFYSFDTTTNEWKLLTPVEE--GP--------- 266 (470)
T ss_pred CCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC----CCccEEEEECCCCEEEEcCcCCC--CC---------
Confidence 345654433344555 367899999999999999986432 24569999999999999885521 12
Q ss_pred ccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccC
Q 006410 83 SLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVN 129 (646)
Q Consensus 83 ~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~ 129 (646)
.+|+.|++++++++||||||.++...++++++||..+.+|...
T Consensus 267 ----~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~ 309 (470)
T PLN02193 267 ----TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHC 309 (470)
T ss_pred ----CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeC
Confidence 3677799999999999999998888899999999999888754
No 43
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.30 E-value=5.7e-12 Score=126.25 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=91.7
Q ss_pred CCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccC-----CCCeEEEEECCCCcEEEccCCcCCCCCCCCCC
Q 006410 4 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIE-----GEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHG 78 (646)
Q Consensus 4 ~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~-----d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~ 78 (646)
+-+|+.+...|.+|.-|-.|+++++++.||||||+.+....+. .-..+..+|..|..|.+.. ..+..|..
T Consensus 166 TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p--~~~~~P~G--- 240 (392)
T KOG4693|consen 166 TMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP--ENTMKPGG--- 240 (392)
T ss_pred ceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC--CCCcCCCc---
Confidence 3468888888999999999999999999999999865322211 1245778999999999876 45555543
Q ss_pred CCCCccccccccceEEEEECCEEEEEcccCCC--CCCCcEEEEeCCCCccccCCCcccC
Q 006410 79 EHDPSLELMRRCRHASASIGVRIYIYGGLKGD--ILLDDFLVAENSPFQSDVNSPLLTS 135 (646)
Q Consensus 79 ~~~~~~~~~~R~~Haa~~~~~~IYVfGG~~~~--~~l~dl~~~D~~~~~~~~~~~~~~~ 135 (646)
|..|++.+++++||||||+.+. .-++|+|+||..+..|+..++.-.+
T Consensus 241 ----------RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 241 ----------RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred ----------ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 4449999999999999999985 5689999999999888876664333
No 44
>PHA02713 hypothetical protein; Provisional
Probab=99.30 E-value=1.7e-11 Score=140.22 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=83.9
Q ss_pred EEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCcccccc
Q 006410 9 WTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMR 88 (646)
Q Consensus 9 w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~ 88 (646)
|...+ .+|.+|.+|++++++++|||+||...... ..+++++||+.+++|..+++| +.+
T Consensus 284 W~~l~-~mp~~r~~~~~a~l~~~IYviGG~~~~~~---~~~~v~~Yd~~~n~W~~~~~m------------------~~~ 341 (557)
T PHA02713 284 YSVIS-TIPNHIINYASAIVDNEIIIAGGYNFNNP---SLNKVYKINIENKIHVELPPM------------------IKN 341 (557)
T ss_pred EEECC-CCCccccceEEEEECCEEEEEcCCCCCCC---ccceEEEEECCCCeEeeCCCC------------------cch
Confidence 44444 68899999999999999999999753221 246699999999999999988 557
Q ss_pred ccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccCCC
Q 006410 89 RCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 89 R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
|+.|++++++++|||+||.++...++++++||..+-+|....+
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 8889999999999999999887778999999988877765433
No 45
>PHA02713 hypothetical protein; Provisional
Probab=99.27 E-value=2.2e-11 Score=139.13 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=82.7
Q ss_pred EEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCcccccc
Q 006410 9 WTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMR 88 (646)
Q Consensus 9 w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~ 88 (646)
|...+ ++|.+|.+|++++++++|||+||..+.. ..+++++||+.+++|..+++| +.+
T Consensus 332 W~~~~-~m~~~R~~~~~~~~~g~IYviGG~~~~~----~~~sve~Ydp~~~~W~~~~~m------------------p~~ 388 (557)
T PHA02713 332 HVELP-PMIKNRCRFSLAVIDDTIYAIGGQNGTN----VERTIECYTMGDDKWKMLPDM------------------PIA 388 (557)
T ss_pred EeeCC-CCcchhhceeEEEECCEEEEECCcCCCC----CCceEEEEECCCCeEEECCCC------------------Ccc
Confidence 45555 6899999999999999999999985432 246699999999999999988 457
Q ss_pred ccceEEEEECCEEEEEcccCCCC------------------CCCcEEEEeCCCCccccCCCc
Q 006410 89 RCRHASASIGVRIYIYGGLKGDI------------------LLDDFLVAENSPFQSDVNSPL 132 (646)
Q Consensus 89 R~~Haa~~~~~~IYVfGG~~~~~------------------~l~dl~~~D~~~~~~~~~~~~ 132 (646)
|+.|++++++++|||+||.++.. .++.+++||+.+-+|....++
T Consensus 389 r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m 450 (557)
T PHA02713 389 LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450 (557)
T ss_pred cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence 78899999999999999987431 367899999988777755443
No 46
>PLN02153 epithiospecifier protein
Probab=99.26 E-value=6.3e-11 Score=127.32 Aligned_cols=107 Identities=20% Similarity=0.174 Sum_probs=77.8
Q ss_pred CceEEEeCCCCCCCC-ccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCc
Q 006410 5 GQWEWTLAPGVAPSP-RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPS 83 (646)
Q Consensus 5 g~W~w~~~~g~~P~p-R~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~ 83 (646)
.+|......+..|.+ +.+|++++++++||||||..... .++++++||+.+++|..++++.....
T Consensus 60 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~~~----------- 124 (341)
T PLN02153 60 HTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR----EFSDFYSYDTVKNEWTFLTKLDEEGG----------- 124 (341)
T ss_pred CEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC----ccCcEEEEECCCCEEEEeccCCCCCC-----------
Confidence 445543322223332 45899999999999999986432 14569999999999998876522222
Q ss_pred cccccccceEEEEECCEEEEEcccCCC------CCCCcEEEEeCCCCcccc
Q 006410 84 LELMRRCRHASASIGVRIYIYGGLKGD------ILLDDFLVAENSPFQSDV 128 (646)
Q Consensus 84 ~~~~~R~~Haa~~~~~~IYVfGG~~~~------~~l~dl~~~D~~~~~~~~ 128 (646)
+.+|+.|++++++++|||+||.+.. ..++++++||..+-+|..
T Consensus 125 --p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 173 (341)
T PLN02153 125 --PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ 173 (341)
T ss_pred --CCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee
Confidence 2367779999999999999998643 246789999999877764
No 47
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.25 E-value=2.4e-11 Score=128.12 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCc
Q 006410 4 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPS 83 (646)
Q Consensus 4 ~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~ 83 (646)
+.+|+.+..+| -|+||++|.+++...+|++|||..+..+.....++||+||..|-+|.++.+ .+.-|+||+|
T Consensus 163 trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep--sga~PtpRSG----- 234 (521)
T KOG1230|consen 163 TRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP--SGAGPTPRSG----- 234 (521)
T ss_pred cchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC--CCCCCCCCCc-----
Confidence 46788888775 699999999999999999999987666555667889999999999999984 4445555555
Q ss_pred cccccccceEEEEE-CCEEEEEcccCC---------CCCCCcEEEEeCCC-----CccccCCC
Q 006410 84 LELMRRCRHASASI-GVRIYIYGGLKG---------DILLDDFLVAENSP-----FQSDVNSP 131 (646)
Q Consensus 84 ~~~~~R~~Haa~~~-~~~IYVfGG~~~---------~~~l~dl~~~D~~~-----~~~~~~~~ 131 (646)
|++.+. ++.|||+||++. +..++|+|.++..+ |+|....|
T Consensus 235 --------cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 235 --------CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred --------ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 999988 999999999974 35789999999777 77764433
No 48
>PHA03098 kelch-like protein; Provisional
Probab=99.21 E-value=7.1e-11 Score=134.35 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=82.2
Q ss_pred EEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccc
Q 006410 8 EWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELM 87 (646)
Q Consensus 8 ~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~ 87 (646)
+|...+ .+|.+|.+|++++++++|||+||..... ..+++++||+.+++|...+++ +.
T Consensus 322 ~W~~~~-~~~~~R~~~~~~~~~~~lyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~l------------------p~ 378 (534)
T PHA03098 322 SWNKVP-ELIYPRKNPGVTVFNNRIYVIGGIYNSI----SLNTVESWKPGESKWREEPPL------------------IF 378 (534)
T ss_pred eeeECC-CCCcccccceEEEECCEEEEEeCCCCCE----ecceEEEEcCCCCceeeCCCc------------------Cc
Confidence 345554 6788999999999999999999986422 256699999999999988876 44
Q ss_pred cccceEEEEECCEEEEEcccCC-CCCCCcEEEEeCCCCccccCCC
Q 006410 88 RRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 88 ~R~~Haa~~~~~~IYVfGG~~~-~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
+|+.|++++++++|||+||... ...++++++||..+.+|....+
T Consensus 379 ~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 379 PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 7778999999999999999754 3457899999988877775443
No 49
>PHA03098 kelch-like protein; Provisional
Probab=99.20 E-value=8.4e-11 Score=133.79 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=82.0
Q ss_pred CCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCc
Q 006410 4 NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPS 83 (646)
Q Consensus 4 ~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~ 83 (646)
+++|+. .+ ++|.||++|++++++++|||+||....+. ..+++++||+.+++|..++++
T Consensus 367 ~~~W~~--~~-~lp~~r~~~~~~~~~~~iYv~GG~~~~~~---~~~~v~~yd~~t~~W~~~~~~---------------- 424 (534)
T PHA03098 367 ESKWRE--EP-PLIFPRYNPCVVNVNNLIYVIGGISKNDE---LLKTVECFSLNTNKWSKGSPL---------------- 424 (534)
T ss_pred CCceee--CC-CcCcCCccceEEEECCEEEEECCcCCCCc---ccceEEEEeCCCCeeeecCCC----------------
Confidence 456654 33 67899999999999999999999754332 246699999999999988766
Q ss_pred cccccccceEEEEECCEEEEEcccCCCC---CCCcEEEEeCCCCccccCC
Q 006410 84 LELMRRCRHASASIGVRIYIYGGLKGDI---LLDDFLVAENSPFQSDVNS 130 (646)
Q Consensus 84 ~~~~~R~~Haa~~~~~~IYVfGG~~~~~---~l~dl~~~D~~~~~~~~~~ 130 (646)
+.+|+.|++++++++|||+||..... .++++++||..+-+|....
T Consensus 425 --p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 425 --PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred --CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 34677799999999999999987542 3677999999987777543
No 50
>PHA02790 Kelch-like protein; Provisional
Probab=99.20 E-value=6.5e-11 Score=133.15 Aligned_cols=93 Identities=18% Similarity=0.396 Sum_probs=79.3
Q ss_pred CCCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCC
Q 006410 3 RNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDP 82 (646)
Q Consensus 3 r~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~ 82 (646)
++++|+.. + ++|.||++|++++++++|||+||. +++||+++++|..+++|
T Consensus 384 ~~~~W~~~--~-~m~~~r~~~~~~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m--------------- 433 (480)
T PHA02790 384 NHDQWQFG--P-STYYPHYKSCALVFGRRLFLVGRN------------AEFYCESSNTWTLIDDP--------------- 433 (480)
T ss_pred CCCEEEeC--C-CCCCccccceEEEECCEEEEECCc------------eEEecCCCCcEeEcCCC---------------
Confidence 34666554 3 688999999999999999999983 57899999999999877
Q ss_pred ccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCcccc
Q 006410 83 SLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDV 128 (646)
Q Consensus 83 ~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~ 128 (646)
+.+|.++++++++++|||+||.++...++.+++||..+-+|+.
T Consensus 434 ---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 434 ---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred ---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEe
Confidence 4578889999999999999999876667899999999888764
No 51
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.15 E-value=2.5e-10 Score=122.73 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=77.9
Q ss_pred CceEEEeCCCCCC-CCccceEEEEECCEEEEEcCCCCCCC--ccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCC
Q 006410 5 GQWEWTLAPGVAP-SPRYQHAAVFVGARLHVTGGALRGGR--AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHD 81 (646)
Q Consensus 5 g~W~w~~~~g~~P-~pR~~Hsav~v~~~LyV~GG~~~~~~--~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~ 81 (646)
++|. ..+ .+| .+|.+|++++++++|||+||...... ....+.++|+||+.+++|..++.+ .
T Consensus 41 ~~W~--~l~-~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~----~--------- 104 (346)
T TIGR03547 41 KGWQ--KIA-DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR----S--------- 104 (346)
T ss_pred CCce--ECC-CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC----C---------
Confidence 4554 333 567 58999999999999999999753210 011245699999999999988621 1
Q ss_pred CccccccccceEEE-EECCEEEEEcccCCC----------------------------------CCCCcEEEEeCCCCcc
Q 006410 82 PSLELMRRCRHASA-SIGVRIYIYGGLKGD----------------------------------ILLDDFLVAENSPFQS 126 (646)
Q Consensus 82 ~~~~~~~R~~Haa~-~~~~~IYVfGG~~~~----------------------------------~~l~dl~~~D~~~~~~ 126 (646)
+..|+.|+++ +++++|||+||.++. ..++++++||..+-+|
T Consensus 105 ----p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W 180 (346)
T TIGR03547 105 ----PVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQW 180 (346)
T ss_pred ----CCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCce
Confidence 1245568777 799999999998642 1247899999998888
Q ss_pred ccCCCc
Q 006410 127 DVNSPL 132 (646)
Q Consensus 127 ~~~~~~ 132 (646)
....+.
T Consensus 181 ~~~~~~ 186 (346)
T TIGR03547 181 RNLGEN 186 (346)
T ss_pred eECccC
Confidence 765544
No 52
>PHA02790 Kelch-like protein; Provisional
Probab=99.11 E-value=4.4e-10 Score=126.46 Aligned_cols=95 Identities=26% Similarity=0.331 Sum_probs=78.2
Q ss_pred EEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCcccccc
Q 006410 9 WTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMR 88 (646)
Q Consensus 9 w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~ 88 (646)
|...+ ++|.+|..|++++++++|||+||... ..++++||+.+++|..+++| +.+
T Consensus 299 W~~~~-~m~~~r~~~~~v~~~~~iYviGG~~~-------~~sve~ydp~~n~W~~~~~l------------------~~~ 352 (480)
T PHA02790 299 WIPIP-PMNSPRLYASGVPANNKLYVVGGLPN-------PTSVERWFHGDAAWVNMPSL------------------LKP 352 (480)
T ss_pred EEECC-CCCchhhcceEEEECCEEEEECCcCC-------CCceEEEECCCCeEEECCCC------------------CCC
Confidence 45554 68899999999999999999999742 24489999999999999887 457
Q ss_pred ccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccccCCC
Q 006410 89 RCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 89 R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
|+.|++++++++|||+||.++. .+.+++||..+-+|+...+
T Consensus 353 r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 353 RCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred CcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCCC
Confidence 8889999999999999998654 3678999988877775433
No 53
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.09 E-value=5.2e-10 Score=103.75 Aligned_cols=162 Identities=23% Similarity=0.226 Sum_probs=99.1
Q ss_pred CeEEEccCCCCHHHH---HHH-HHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHH--HHHhhccCCCeEEecCCc
Q 006410 343 PVKVFGDLHGQFGDL---MRL-FDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 416 (646)
Q Consensus 343 pi~VvGDIHG~~~dL---~~i-l~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL--~~Lk~~~P~~v~lLrGNH 416 (646)
+|+++||+|+.+... .+. .........+ .+|++||++|++..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 488999999999987 333 3332222222 6899999999999988877765 555666778999999999
Q ss_pred ccchhhhhcCChHHHHHHhCCC------------------------------cchhhhHhhhhhhccCCceEEEcCcEEE
Q 006410 417 EAADINALFGFRLECIERMGEN------------------------------DGIWAWTRFNQLFNCLPLAALIEKKIIC 466 (646)
Q Consensus 417 E~~~i~~~~gf~~e~~~~~~~~------------------------------~~~~~~~~~~~~f~~LPlaa~i~~~il~ 466 (646)
|.......+............. ...........+.............|++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 155 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVF 155 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEE
T ss_pred ccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEE
Confidence 9987655433222221100000 0000111111222222333344557888
Q ss_pred ecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEec
Q 006410 467 MHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRA 546 (646)
Q Consensus 467 vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRg 546 (646)
+|.++.+....-... .....+.+.+..++++.++++++-|
T Consensus 156 ~H~p~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~G 195 (200)
T PF00149_consen 156 THHPPYSSSSDSSSY----------------------------------------GNESKGREALEELLKKYNVDLVLSG 195 (200)
T ss_dssp ESSSSSTTSSSTHHH----------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCCCcccccccc----------------------------------------chhhccHHHHHHHHhhCCCCEEEeC
Confidence 888887652111100 1135678899999999999999999
Q ss_pred cccc
Q 006410 547 HECV 550 (646)
Q Consensus 547 He~v 550 (646)
|.-.
T Consensus 196 H~H~ 199 (200)
T PF00149_consen 196 HTHR 199 (200)
T ss_dssp SSSS
T ss_pred ceec
Confidence 9753
No 54
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.03 E-value=1.6e-09 Score=118.15 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=76.9
Q ss_pred CceEEEeCCCCCC-CCccceEEEEECCEEEEEcCCCCCCC--ccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCC
Q 006410 5 GQWEWTLAPGVAP-SPRYQHAAVFVGARLHVTGGALRGGR--AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHD 81 (646)
Q Consensus 5 g~W~w~~~~g~~P-~pR~~Hsav~v~~~LyV~GG~~~~~~--~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~ 81 (646)
++|.. .+ .+| .+|.+|++++++++|||+||...... ....++++|+||+.+++|..++++ .
T Consensus 62 ~~W~~--l~-~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~--~----------- 125 (376)
T PRK14131 62 KGWTK--IA-AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR--S----------- 125 (376)
T ss_pred CCeEE--CC-cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC--C-----------
Confidence 55653 33 345 58999999999999999999753110 011245699999999999998732 1
Q ss_pred CccccccccceEEEE-ECCEEEEEcccCCC----------------------------------CCCCcEEEEeCCCCcc
Q 006410 82 PSLELMRRCRHASAS-IGVRIYIYGGLKGD----------------------------------ILLDDFLVAENSPFQS 126 (646)
Q Consensus 82 ~~~~~~~R~~Haa~~-~~~~IYVfGG~~~~----------------------------------~~l~dl~~~D~~~~~~ 126 (646)
+.+|+.|++++ ++++|||+||.... ...+++++||..+-+|
T Consensus 126 ----p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W 201 (376)
T PRK14131 126 ----PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQW 201 (376)
T ss_pred ----CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCee
Confidence 12455688877 89999999998642 1247899999998888
Q ss_pred ccCCC
Q 006410 127 DVNSP 131 (646)
Q Consensus 127 ~~~~~ 131 (646)
....+
T Consensus 202 ~~~~~ 206 (376)
T PRK14131 202 KNAGE 206 (376)
T ss_pred eECCc
Confidence 76543
No 55
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.01 E-value=1.5e-09 Score=116.86 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=87.3
Q ss_pred CCceEEEeCC------CCCCCCccceEEEEECCEEEEEcCCCCCC-C---c-cCCCCeEEEEECCCC----cEEEccCCc
Q 006410 4 NGQWEWTLAP------GVAPSPRYQHAAVFVGARLHVTGGALRGG-R---A-IEGEAAVAVLDTAAG----VWLDRNGLV 68 (646)
Q Consensus 4 ~g~W~w~~~~------g~~P~pR~~Hsav~v~~~LyV~GG~~~~~-~---~-~~d~~~v~~yD~~t~----~W~~~~~~~ 68 (646)
..+|+|.... |.+|.||-+|+.+.++++.|+|||-.+.. . . -..++++|+++..-+ .|.... .
T Consensus 115 asRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~--t 192 (830)
T KOG4152|consen 115 ASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPI--T 192 (830)
T ss_pred hhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEeccc--c
Confidence 3689998664 78899999999999999999999964321 1 0 122566998887644 498776 7
Q ss_pred CCCCCCCCCCCCCCccccccccceEEEEE------CCEEEEEcccCCCCCCCcEEEEeCCCCccccCCC
Q 006410 69 TSSRTSKGHGEHDPSLELMRRCRHASASI------GVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 69 ~~~~p~~r~~~~~~~~~~~~R~~Haa~~~------~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
.|..|.+|.+ |.++++ ..+||||||++| ..|.|+|.+|..++.|...+-
T Consensus 193 ~Gv~P~pRES-------------HTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~ 247 (830)
T KOG4152|consen 193 YGVLPPPRES-------------HTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSL 247 (830)
T ss_pred cCCCCCCccc-------------ceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeecccccc
Confidence 7777776666 999999 468999999987 679999999999998875443
No 56
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.96 E-value=3.7e-09 Score=113.73 Aligned_cols=106 Identities=12% Similarity=0.103 Sum_probs=73.2
Q ss_pred EEeCCCCCCCCccceEEE-EECCEEEEEcCCCCCC--Ccc----------------------------CCCCeEEEEECC
Q 006410 9 WTLAPGVAPSPRYQHAAV-FVGARLHVTGGALRGG--RAI----------------------------EGEAAVAVLDTA 57 (646)
Q Consensus 9 w~~~~g~~P~pR~~Hsav-~v~~~LyV~GG~~~~~--~~~----------------------------~d~~~v~~yD~~ 57 (646)
|...+..+|.+|.+|+++ +++++|||+||..... ... ...+++++||+.
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~ 176 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPS 176 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECC
Confidence 344332467778888776 7999999999975310 000 013679999999
Q ss_pred CCcEEEccCCcCCCCCCCCCCCCCCcccc-ccccceEEEEECCEEEEEcccCCCC-CCCcEEEEe--CCCCccccCCCc
Q 006410 58 AGVWLDRNGLVTSSRTSKGHGEHDPSLEL-MRRCRHASASIGVRIYIYGGLKGDI-LLDDFLVAE--NSPFQSDVNSPL 132 (646)
Q Consensus 58 t~~W~~~~~~~~~~~p~~r~~~~~~~~~~-~~R~~Haa~~~~~~IYVfGG~~~~~-~l~dl~~~D--~~~~~~~~~~~~ 132 (646)
+++|..+++| + .+|++|++++++++|||+||..... ...++++|| ..+.+|....++
T Consensus 177 t~~W~~~~~~------------------p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 177 TNQWRNLGEN------------------PFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CCceeECccC------------------CCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 9999998876 2 2577899999999999999986543 234566665 454566544443
No 57
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-09 Score=100.50 Aligned_cols=147 Identities=35% Similarity=0.502 Sum_probs=116.9
Q ss_pred hhhhhcCChHHHHHHhCCCcchhhhHh---hhhhhccCCceEEEcC-cEEEecCCcCCCC-CCHHHhhhccCCc--ccCC
Q 006410 420 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 492 (646)
Q Consensus 420 ~i~~~~gf~~e~~~~~~~~~~~~~~~~---~~~~f~~LPlaa~i~~-~il~vHGGi~~~~-~~l~~I~~i~rp~--~~~~ 492 (646)
.+...+|+.++|...++.. ..|.. +.++|+.||+++++++ .++|.||++++.+ ..+++++.+.|.. .+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3556788888887777542 24665 9999999999999988 9999999999976 6788888887765 3333
Q ss_pred CcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccC
Q 006410 493 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 572 (646)
Q Consensus 493 ~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~ 572 (646)
.+ ...+.+|++|... ....|.+++||.+. .| .+....|+..+....|.|+|+.+..++...+.+..+|.|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 33 4556699998752 24679999999983 34 678888998888888999999999999887776899999999997
Q ss_pred C
Q 006410 573 G 573 (646)
Q Consensus 573 ~ 573 (646)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 58
>PLN02772 guanylate kinase
Probab=98.84 E-value=1.7e-08 Score=108.99 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=72.8
Q ss_pred CCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceE
Q 006410 14 GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 93 (646)
Q Consensus 14 g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Ha 93 (646)
|.-+.||.+|+++.+++++|||||+++.+.. .+.+++||+.|++|..+. +.|..|.+|.+ |+
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~---~~~v~i~D~~t~~W~~P~--V~G~~P~~r~G-------------hS 80 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTL---SIGVQILDKITNNWVSPI--VLGTGPKPCKG-------------YS 80 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCCccc---cceEEEEECCCCcEeccc--ccCCCCCCCCc-------------ce
Confidence 3446789999999999999999998774433 345999999999999988 88888776665 99
Q ss_pred EEEE-CCEEEEEcccCCCCCCCcEEEEeCCC
Q 006410 94 SASI-GVRIYIYGGLKGDILLDDFLVAENSP 123 (646)
Q Consensus 94 a~~~-~~~IYVfGG~~~~~~l~dl~~~D~~~ 123 (646)
+|++ +++|+|+++-... -+++|.+...+
T Consensus 81 a~v~~~~rilv~~~~~~~--~~~~w~l~~~t 109 (398)
T PLN02772 81 AVVLNKDRILVIKKGSAP--DDSIWFLEVDT 109 (398)
T ss_pred EEEECCceEEEEeCCCCC--ccceEEEEcCC
Confidence 9999 5899999875543 37889887655
No 59
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.84 E-value=1.7e-08 Score=110.18 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=73.6
Q ss_pred CceEEEeCCCCCCCCccceEEEE-ECCEEEEEcCCCCCC--Ccc----------------------------CCCCeEEE
Q 006410 5 GQWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGGALRGG--RAI----------------------------EGEAAVAV 53 (646)
Q Consensus 5 g~W~w~~~~g~~P~pR~~Hsav~-v~~~LyV~GG~~~~~--~~~----------------------------~d~~~v~~ 53 (646)
++|+- .+...|.+|.+|++++ .+++|||+||..... ... ...+.+++
T Consensus 116 n~W~~--~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~ 193 (376)
T PRK14131 116 NSWQK--LDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS 193 (376)
T ss_pred CEEEe--CCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEE
Confidence 44544 3323577788898777 899999999975310 000 01356999
Q ss_pred EECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcccCCC-CCCCcEEEE--eCCCCccccCC
Q 006410 54 LDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGD-ILLDDFLVA--ENSPFQSDVNS 130 (646)
Q Consensus 54 yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~~~~IYVfGG~~~~-~~l~dl~~~--D~~~~~~~~~~ 130 (646)
||+.+++|..+.++ | ..+|+.|++++++++|||+||.... ....+++.+ |..+.+|....
T Consensus 194 YD~~t~~W~~~~~~-----p------------~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 194 YDPSTNQWKNAGES-----P------------FLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred EECCCCeeeECCcC-----C------------CCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 99999999988755 1 1256779999999999999997543 334555544 55666676554
Q ss_pred Cc
Q 006410 131 PL 132 (646)
Q Consensus 131 ~~ 132 (646)
+.
T Consensus 257 ~~ 258 (376)
T PRK14131 257 DL 258 (376)
T ss_pred CC
Confidence 43
No 60
>PF13964 Kelch_6: Kelch motif
Probab=98.84 E-value=7.8e-09 Score=79.56 Aligned_cols=46 Identities=33% Similarity=0.550 Sum_probs=40.1
Q ss_pred CccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCC
Q 006410 19 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 67 (646)
Q Consensus 19 pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~ 67 (646)
||.+|++|+++++|||+||..... ...+++++||++|++|..+++|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~---~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSG---KYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCC---CccccEEEEcCCCCcEEECCCC
Confidence 699999999999999999987632 2356699999999999999977
No 61
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.83 E-value=2.9e-09 Score=114.70 Aligned_cols=106 Identities=24% Similarity=0.419 Sum_probs=88.7
Q ss_pred ceEEEeCC-CCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCcc
Q 006410 6 QWEWTLAP-GVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSL 84 (646)
Q Consensus 6 ~W~w~~~~-g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~ 84 (646)
+|+.+.-. |+.|.||.+|.+|++...|+||||.+.+ ..++ +++|++.+++|...+ +.|.-|.++++
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG--iiDE---LHvYNTatnqWf~Pa--vrGDiPpgcAA------ 84 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG--IIDE---LHVYNTATNQWFAPA--VRGDIPPGCAA------ 84 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCccc--chhh---hhhhccccceeecch--hcCCCCCchhh------
Confidence 57766554 8889999999999999999999997653 2344 999999999999888 77766665555
Q ss_pred ccccccceEEEEECCEEEEEcccCC-CCCCCcEEEEeCCCCccccCCC
Q 006410 85 ELMRRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 85 ~~~~R~~Haa~~~~~~IYVfGG~~~-~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
|+++..+.+||+|||+-. +.+.||++-+..+.|+|+-..|
T Consensus 85 -------~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp 125 (830)
T KOG4152|consen 85 -------FGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKP 125 (830)
T ss_pred -------cceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCC
Confidence 999999999999999876 4788999999999999987666
No 62
>PRK09453 phosphodiesterase; Provisional
Probab=98.75 E-value=3.1e-08 Score=97.12 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=52.6
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC--------hHHHHHHHHHHhhccCCCeEEecC
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 414 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~--------s~evl~lL~~Lk~~~P~~v~lLrG 414 (646)
++.|++|+||++..+.++++.+.....+ .++++||++|+|++ ..+++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 5789999999999999998876433333 79999999999873 45666666543 247999999
Q ss_pred Ccccch
Q 006410 415 NHEAAD 420 (646)
Q Consensus 415 NHE~~~ 420 (646)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 63
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.73 E-value=3.2e-07 Score=87.09 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=47.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccc
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
++.+++|+||++..+.++++.... .+ .++++||+++++.... ++ ....+++++||||..
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hh--cCCcEEEEeCCCCCc
Confidence 478999999999999999998754 22 7999999999998765 11 234699999999974
No 64
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.70 E-value=3.7e-08 Score=75.56 Aligned_cols=48 Identities=29% Similarity=0.484 Sum_probs=38.5
Q ss_pred CccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCC
Q 006410 19 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 67 (646)
Q Consensus 19 pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~ 67 (646)
||++|++++++++||||||+.... .....+++++||+++++|..++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~-~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDN-GGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCC-CCcccceeEEEECCCCEEeecCCC
Confidence 699999999999999999991111 123356799999999999998855
No 65
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.68 E-value=3e-07 Score=86.68 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=43.9
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
+|.++||+|++...+.++++... ..+ .++++||++|+ .+++.++..+ .++.++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 58899999999999999999982 122 68899999993 7777777554 6999999999644
No 66
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.60 E-value=4.8e-08 Score=73.85 Aligned_cols=46 Identities=33% Similarity=0.522 Sum_probs=39.2
Q ss_pred CccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCC
Q 006410 19 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 67 (646)
Q Consensus 19 pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~ 67 (646)
||++|++++++++|||+||..... ...+++++||+.+++|..+++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN---QPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS---SBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccC---ceeeeEEEEeCCCCEEEEcCCC
Confidence 699999999999999999987622 2366799999999999998876
No 67
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.57 E-value=1.4e-06 Score=83.21 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=46.2
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCC-CCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~-~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
++.|++|+||++..+..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||.
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~ 63 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDG 63 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCc
Confidence 4789999999998777666655443 223 789999999 467777776542 359999999997
No 68
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.54 E-value=4.1e-07 Score=84.64 Aligned_cols=118 Identities=22% Similarity=0.286 Sum_probs=76.8
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChH--HHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~--evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
.|.++||+||++. .+ .....+ .+|++||+++++...- +.+.++..++ .| .++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~~-~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--HP-HKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--CC-eEEEEECCCCCcC
Confidence 3789999999987 11 112222 6888999999986532 2344444332 22 3678999999531
Q ss_pred hhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCccccccc
Q 006410 421 INALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDL 500 (646)
Q Consensus 421 i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dl 500 (646)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 11346899998542210 00
Q ss_pred ccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceE
Q 006410 501 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 555 (646)
Q Consensus 501 LWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 555 (646)
++ + . ...|...+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 23577889999999999999999999988876
No 69
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.52 E-value=1.1e-07 Score=72.72 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=30.2
Q ss_pred CccceEEEEE-CCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCC
Q 006410 19 PRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 67 (646)
Q Consensus 19 pR~~Hsav~v-~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~ 67 (646)
||++|+++.+ +++||||||....+.. ++++|+||+++++|.+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~---~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSP---LNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE------EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcc---cCCEEEEECCCCEEEECCCC
Confidence 7999999998 5899999998765433 44599999999999998654
No 70
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.50 E-value=1.6e-06 Score=88.00 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=55.5
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccc
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
+|.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..|. ..+..++.++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~-~l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILG-EAHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHH-hcCCceEEEcCCCChH
Confidence 5899999999999999999876322223 79999999999977777777776664 3334799999999975
No 71
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.43 E-value=5.4e-07 Score=69.07 Aligned_cols=48 Identities=31% Similarity=0.423 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCC-CCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEEEE
Q 006410 29 GARLHVTGGALR-GGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI 97 (646)
Q Consensus 29 ~~~LyV~GG~~~-~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~ 97 (646)
|++||||||... ... .++++|+||+.+++|+++..+ +.+|+.|+++++
T Consensus 1 g~~~~vfGG~~~~~~~---~~nd~~~~~~~~~~W~~~~~~------------------P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT---RLNDVWVFDLDTNTWTRIGDL------------------PPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC---EecCEEEEECCCCEEEECCCC------------------CCCccceEEEEC
Confidence 689999999873 232 245699999999999988544 336777999864
No 72
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.42 E-value=2.8e-06 Score=86.68 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=71.3
Q ss_pred CeEEEccCCCCHHHHH-HHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 343 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~-~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
.|+++|||||++.... +.++..+ .+ .+||+||+++. +.+++..|..+ +..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~---pD------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ---PD------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC---CC------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 4789999999987642 3343322 12 79999999864 56776666554 3468999999997553
Q ss_pred hh---hcCCh------------------------------------------HHHHHHhCCCcchhhhHhhhhhhccCCc
Q 006410 422 NA---LFGFR------------------------------------------LECIERMGENDGIWAWTRFNQLFNCLPL 456 (646)
Q Consensus 422 ~~---~~gf~------------------------------------------~e~~~~~~~~~~~~~~~~~~~~f~~LPl 456 (646)
.. .+... .++...|+ -...++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 20 00001 13444443 12345566677777764
Q ss_pred eEEEcCcEEEecCCcCCC
Q 006410 457 AALIEKKIICMHGGIGRS 474 (646)
Q Consensus 457 aa~i~~~il~vHGGi~~~ 474 (646)
+......||+.|+++.-.
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 444445799999998654
No 73
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.39 E-value=3.1e-06 Score=75.94 Aligned_cols=117 Identities=23% Similarity=0.336 Sum_probs=82.5
Q ss_pred EEEccCCCCHHHHHHHH--HHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhh
Q 006410 345 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 422 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il--~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~ 422 (646)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999998888765 222212222 68999999999998877766544444456678999999999
Q ss_pred hhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCccccccccc
Q 006410 423 ALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLW 502 (646)
Q Consensus 423 ~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLW 502 (646)
++++|.++.+...... +
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~~----------------------~ 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDELS----------------------P 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhhc----------------------c
Confidence 8889988865421000 0
Q ss_pred CCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceE
Q 006410 503 SDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 555 (646)
Q Consensus 503 sDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 555 (646)
. .......+...+...+.+++|-||.-....+.
T Consensus 87 ~--------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 D--------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred c--------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00145677888899999999999998765554
No 74
>PF13854 Kelch_5: Kelch motif
Probab=98.38 E-value=7.6e-07 Score=66.12 Aligned_cols=41 Identities=37% Similarity=0.530 Sum_probs=33.5
Q ss_pred CCCCccceEEEEECCEEEEEcCCCC-CCCccCCCCeEEEEECCCC
Q 006410 16 APSPRYQHAAVFVGARLHVTGGALR-GGRAIEGEAAVAVLDTAAG 59 (646)
Q Consensus 16 ~P~pR~~Hsav~v~~~LyV~GG~~~-~~~~~~d~~~v~~yD~~t~ 59 (646)
.|.||++|++++++++||||||... .... .+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~---~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSY---SNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCE---ECcEEEEECCCC
Confidence 4889999999999999999999974 3333 455999998763
No 75
>PF13964 Kelch_6: Kelch motif
Probab=98.36 E-value=7.6e-07 Score=68.43 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=39.7
Q ss_pred cccceEEEEECCEEEEEcccCC-CCCCCcEEEEeCCCCccccCCCc
Q 006410 88 RRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSDVNSPL 132 (646)
Q Consensus 88 ~R~~Haa~~~~~~IYVfGG~~~-~~~l~dl~~~D~~~~~~~~~~~~ 132 (646)
+|++|++++++++|||+||... ...++++++||..+.+|....++
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC
Confidence 5788999999999999999998 68899999999999888865543
No 76
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.33 E-value=1e-06 Score=67.53 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=38.0
Q ss_pred cccceEEEEECCEEEEEccc---CCCCCCCcEEEEeCCCCccccCCC
Q 006410 88 RRCRHASASIGVRIYIYGGL---KGDILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 88 ~R~~Haa~~~~~~IYVfGG~---~~~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
+|+.|++++++++||||||+ ......+++++||+.+.+|....+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 57889999999999999999 445789999999999999885443
No 77
>PF13854 Kelch_5: Kelch motif
Probab=98.28 E-value=1.3e-06 Score=64.80 Aligned_cols=38 Identities=32% Similarity=0.647 Sum_probs=33.5
Q ss_pred ccccceEEEEECCEEEEEcccCC--CCCCCcEEEEeCCCC
Q 006410 87 MRRCRHASASIGVRIYIYGGLKG--DILLDDFLVAENSPF 124 (646)
Q Consensus 87 ~~R~~Haa~~~~~~IYVfGG~~~--~~~l~dl~~~D~~~~ 124 (646)
.+|.+|++++++++||||||..+ ...++|+|+||+.++
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 36788999999999999999994 678999999998763
No 78
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.16 E-value=7.2e-05 Score=73.33 Aligned_cols=57 Identities=28% Similarity=0.468 Sum_probs=41.4
Q ss_pred eEEEccCC-CCHH-----HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcc
Q 006410 344 VKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 417 (646)
Q Consensus 344 i~VvGDIH-G~~~-----dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE 417 (646)
|.||+|+| |.-. .+.++++. ...+ .++++||+++ .+++.+|..++ ..++.++||||
T Consensus 2 i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D 63 (178)
T cd07394 2 VLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFD 63 (178)
T ss_pred EEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCC
Confidence 78999999 6543 35555554 1122 7899999987 77777776652 25899999999
Q ss_pred c
Q 006410 418 A 418 (646)
Q Consensus 418 ~ 418 (646)
.
T Consensus 64 ~ 64 (178)
T cd07394 64 E 64 (178)
T ss_pred c
Confidence 6
No 79
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.15 E-value=1.8e-06 Score=65.14 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.3
Q ss_pred cccceEEEEECCEEEEEcccCC-CCCCCcEEEEeCCCCccccCCC
Q 006410 88 RRCRHASASIGVRIYIYGGLKG-DILLDDFLVAENSPFQSDVNSP 131 (646)
Q Consensus 88 ~R~~Haa~~~~~~IYVfGG~~~-~~~l~dl~~~D~~~~~~~~~~~ 131 (646)
+|+.|++++++++|||+||.++ ...++++++||..+-+|....+
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 5788999999999999999998 6889999999999988875443
No 80
>smart00612 Kelch Kelch domain.
Probab=98.11 E-value=4.4e-06 Score=62.29 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEEEECC
Q 006410 31 RLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV 99 (646)
Q Consensus 31 ~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~~~ 99 (646)
+|||+||..... ..+++++||+.+++|..+++| +.+|+.|+++++++
T Consensus 1 ~iyv~GG~~~~~----~~~~v~~yd~~~~~W~~~~~~------------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ----RLKSVEVYDPETNKWTPLPSM------------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc----eeeeEEEECCCCCeEccCCCC------------------CCccccceEEEeCC
Confidence 489999985422 256699999999999998877 45788899998864
No 81
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=8.6e-06 Score=85.74 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=64.4
Q ss_pred CceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCC-ccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCc
Q 006410 5 GQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGR-AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPS 83 (646)
Q Consensus 5 g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~-~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~ 83 (646)
..|+-+. ..+-.+|.+..+++++++||||||...... ....++++|+||+.+++|.++. +..|+.
T Consensus 70 k~W~~~a--~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~--t~sP~g---------- 135 (381)
T COG3055 70 KGWTKIA--DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLD--TRSPTG---------- 135 (381)
T ss_pred CCceEcc--cCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheec--cccccc----------
Confidence 3454443 345568999999999999999999753221 2334677999999999999988 433332
Q ss_pred cccccccceEEEEECC-EEEEEcccCCC
Q 006410 84 LELMRRCRHASASIGV-RIYIYGGLKGD 110 (646)
Q Consensus 84 ~~~~~R~~Haa~~~~~-~IYVfGG~~~~ 110 (646)
-..|.++++++ +||++||++..
T Consensus 136 -----l~G~~~~~~~~~~i~f~GGvn~~ 158 (381)
T COG3055 136 -----LVGASTFSLNGTKIYFFGGVNQN 158 (381)
T ss_pred -----cccceeEecCCceEEEEccccHH
Confidence 23489999988 99999999864
No 82
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.00 E-value=4.9e-06 Score=63.53 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=28.7
Q ss_pred cccceEEEEE-CCEEEEEcccCCC-CCCCcEEEEeCCCCccccC
Q 006410 88 RRCRHASASI-GVRIYIYGGLKGD-ILLDDFLVAENSPFQSDVN 129 (646)
Q Consensus 88 ~R~~Haa~~~-~~~IYVfGG~~~~-~~l~dl~~~D~~~~~~~~~ 129 (646)
+|+.|+++.+ +++||||||.+.. ..++|+++||..+.+|...
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 5888999999 5899999999986 6899999999999888754
No 83
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.87 E-value=0.00015 Score=67.25 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=39.7
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcc
Q 006410 345 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 417 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE 417 (646)
.|++|.||..+.+.++.... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777766652 2222 799999984 34556665542 235899999999
No 84
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.87 E-value=2.7e-05 Score=75.67 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=44.3
Q ss_pred eEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh-HHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 344 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 344 i~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
|.++|||||++..+.. ........+ -+|+.||++++|... .+.+..|. ..+..++.+.||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~----~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLL----AIGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHH----hcCCCEEEEcCCCCCHH
Confidence 5789999999998876 222111222 689999999999763 33333332 23456999999999743
No 85
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.80 E-value=5.7e-06 Score=90.23 Aligned_cols=238 Identities=11% Similarity=-0.001 Sum_probs=161.9
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCC
Q 006410 314 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 389 (646)
Q Consensus 314 ~l~~~~i~~l~~~~~~il~~ep~~l~l~~----pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~ 389 (646)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.++++.- |... .-|++-|++++++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~-----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYI-----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhh-----heeeeccHHHHhHH
Confidence 56788899999999999999998888753 4889999999999999988864 2211 15999999999999
Q ss_pred ChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecC
Q 006410 390 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 469 (646)
Q Consensus 390 ~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHG 469 (646)
...+.+..|...+...|+...+.|++||+..+-..++|..+....+++. +..++..+...+.. |++..+.+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999988877766543 22232222222222 14455544333222
Q ss_pred CcCCCCCCHHHhh-----------------------------hccCCcccCCCcccccccccCCCCCCCccCCCCCCCCC
Q 006410 470 GIGRSIHSVEQIE-----------------------------KLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARG 520 (646)
Q Consensus 470 Gi~~~~~~l~~I~-----------------------------~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg 520 (646)
- .+.+.+. .+.-++++. .-.|..|+++... ...+-...++
T Consensus 164 k-----vt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~----~~~d~~~sv~gd~--hGqfydl~ni 232 (476)
T KOG0376|consen 164 K-----VTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEIS----VPGDVKISVCGDT--HGQFYDLLNI 232 (476)
T ss_pred h-----hhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEee----cCCCceEEecCCc--cccccchhhh
Confidence 1 1111111 111122221 3456788888642 2223334555
Q ss_pred CCceeeChhHHHHHHHHcCCeEEEeccccc-----------ccc-eEEe---cCCeEEEEeeccccCC
Q 006410 521 PGLVTFGPDRVSDFCKRNKLQLIIRAHECV-----------MDG-FERF---AQGQLITLFSATNYCG 573 (646)
Q Consensus 521 ~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v-----------~~G-~~~~---~~~~liTvFSa~ny~~ 573 (646)
.+ ...+++....||.+.++.-+++.|.-+ +++ |... ..+.++++|+++.+|-
T Consensus 233 f~-l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 233 FE-LNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred Hh-hcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 55 346778888899999998888887644 222 2111 1235899999998874
No 86
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.73 E-value=0.0001 Score=75.66 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=46.0
Q ss_pred CeEEEccCCCCH------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCC--C-----CChHHHHHHHHHHhhccCCCe
Q 006410 343 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR--G-----QHSLETITLLLALKIEYPENV 409 (646)
Q Consensus 343 pi~VvGDIHG~~------~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDR--G-----~~s~evl~lL~~Lk~~~P~~v 409 (646)
++++++|+|... ..|.++++.... ..+ .++++||++|. | +...+++.+|..|+. .+-.+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~-~~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~-~g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEAR-QAD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSD-SGVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHH-cCCeE
Confidence 588999999432 235555543211 112 68999999985 2 334677777777753 33479
Q ss_pred EEecCCcccc
Q 006410 410 HLIRGNHEAA 419 (646)
Q Consensus 410 ~lLrGNHE~~ 419 (646)
+++.||||..
T Consensus 74 ~~v~GNHD~~ 83 (241)
T PRK05340 74 YFMHGNRDFL 83 (241)
T ss_pred EEEeCCCchh
Confidence 9999999963
No 87
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.72 E-value=0.0025 Score=64.17 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=40.1
Q ss_pred eChhHHHHHHHHc-CCeEEEecccccccceEEe-----cCCeEEEEeeccccCCCCCC-cEEEEEEcCc-ceEEEEEecC
Q 006410 526 FGPDRVSDFCKRN-KLQLIIRAHECVMDGFERF-----AQGQLITLFSATNYCGTANN-AGAILVVGRG-LVVVPKLIHP 597 (646)
Q Consensus 526 Fg~~~~~~fl~~n-~l~~IiRgHe~v~~G~~~~-----~~~~liTvFSa~ny~~~~~N-~ga~l~i~~~-~~~~~~~~~~ 597 (646)
.+...+.+.++++ ++++++-||.-. .+.... .++.+..+++....-...+| .=.++.++.+ ..+..+.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 3556788889988 899999999654 333332 13345555443211111122 1245556655 4777777665
No 88
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.72 E-value=0.00067 Score=63.35 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceE
Q 006410 527 GPDRVSDFCKRNKLQLIIRAHECVMDGFE 555 (646)
Q Consensus 527 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 555 (646)
+.+.+.+++++.+.++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55678899999999999999998755544
No 89
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.65 E-value=4.3e-05 Score=73.46 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=45.3
Q ss_pred eEEEccCCCCHHHHHHHHHH-hCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccc
Q 006410 344 VKVFGDLHGQFGDLMRLFDE-YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 344 i~VvGDIHG~~~dL~~il~~-~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
+.+++|||+....+...+.. ......+ -++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998777655421 1111122 6888999999987765544 2222 23456799999999985
No 90
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.57 E-value=0.00017 Score=75.32 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=48.6
Q ss_pred CeEEEccCCCC----HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC--CChHHHHHHHHHHhhccCCCeEEecCCc
Q 006410 343 PVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGNH 416 (646)
Q Consensus 343 pi~VvGDIHG~----~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG--~~s~evl~lL~~Lk~~~P~~v~lLrGNH 416 (646)
.|.+++|||.. ...+.++++...-...+ -++++||++|++ ...-++..+|..|+... .++.+.|||
T Consensus 51 rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNH 122 (271)
T PRK11340 51 KILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNH 122 (271)
T ss_pred EEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCC
Confidence 48999999965 45567777665432223 688999999954 23345666677776544 599999999
Q ss_pred ccc
Q 006410 417 EAA 419 (646)
Q Consensus 417 E~~ 419 (646)
|..
T Consensus 123 D~~ 125 (271)
T PRK11340 123 DRP 125 (271)
T ss_pred Ccc
Confidence 963
No 91
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.47 E-value=0.00018 Score=72.14 Aligned_cols=69 Identities=29% Similarity=0.291 Sum_probs=48.3
Q ss_pred CeEEEccCCCCHH----HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChH-HHHHHHHHHhhccCCCeEEecCCcc
Q 006410 343 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 417 (646)
Q Consensus 343 pi~VvGDIHG~~~----dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~-evl~lL~~Lk~~~P~~v~lLrGNHE 417 (646)
.+.+++|+|+... .+.++++...-...+ -+|++||++|.+.... ++..++..++ .+..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcc
Confidence 5889999998643 566666665422222 6888999999987765 4555554443 3456999999999
Q ss_pred cc
Q 006410 418 AA 419 (646)
Q Consensus 418 ~~ 419 (646)
..
T Consensus 75 ~~ 76 (223)
T cd07385 75 YY 76 (223)
T ss_pred cc
Confidence 74
No 92
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.43 E-value=0.0066 Score=59.25 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=43.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
.|.|++|.||...+..+..+.......+ .+|.+||++...... +|......+++.++||.|...
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 5789999999997655555554433333 688899999865432 111102368999999999743
No 93
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.42 E-value=0.00045 Score=67.13 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=27.6
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 377 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s--~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
.+|++||++|..... .+...+-+......+-.+++++||||...
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 799999999865432 22222111112234568999999999743
No 94
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.37 E-value=0.00042 Score=70.60 Aligned_cols=206 Identities=15% Similarity=0.185 Sum_probs=99.5
Q ss_pred eEEEccCCCCH------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC-----CC--hHHHHHHHHHHhhccCCCeE
Q 006410 344 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-----QH--SLETITLLLALKIEYPENVH 410 (646)
Q Consensus 344 i~VvGDIHG~~------~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG-----~~--s~evl~lL~~Lk~~~P~~v~ 410 (646)
+++++|+|... ..+++.+..... ..+ .++++||++|.. +. .-++..+|..|+.. +..|+
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KAD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999532 234455544321 122 689999999952 11 23456666666533 45799
Q ss_pred EecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEE-cCcEEEecCCcCCCCC-CHHHhhhc-cCC
Q 006410 411 LIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIH-SVEQIEKL-ERP 487 (646)
Q Consensus 411 lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i-~~~il~vHGGi~~~~~-~l~~I~~i-~rp 487 (646)
++.||||...-. ...... +. .++.. +....+ +.+++++||-.-..-. ...-.+++ ..|
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~----gi-------~~l~~-~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~ 133 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREA----GM-------TLLPD-PSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQP 133 (231)
T ss_pred EEcCCCchhhhH-------HHHHHC----CC-------EEECC-CEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCH
Confidence 999999973211 001111 11 11211 112222 4589999997543211 11112222 112
Q ss_pred ccc------CC-CcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCC
Q 006410 488 ITM------DA-GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG 560 (646)
Q Consensus 488 ~~~------~~-~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~ 560 (646)
.-. +. ....+...+++..... .. .+..-.....+..+.+++++.+.+++|-||.-.+.=+.+..++
T Consensus 134 ~~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~ 206 (231)
T TIGR01854 134 WLQRLFLHLPLAVRVKLARKIRAESRAD---KQ----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADG 206 (231)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh---cC----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCC
Confidence 100 00 0011223333322110 00 0001123356778899999999999999999764434332233
Q ss_pred eEEEEeeccccCCCCCCcEEEEEEcCc
Q 006410 561 QLITLFSATNYCGTANNAGAILVVGRG 587 (646)
Q Consensus 561 ~liTvFSa~ny~~~~~N~ga~l~i~~~ 587 (646)
.-++-+.-++.. ..+.+++++++
T Consensus 207 ~~~~~~~lgdW~----~~~~~~~~~~~ 229 (231)
T TIGR01854 207 QPATRIVLGDWY----RQGSILRVDAD 229 (231)
T ss_pred CccEEEEECCCc----cCCeEEEEcCC
Confidence 222333333331 23556666543
No 95
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.30 E-value=0.00013 Score=79.60 Aligned_cols=101 Identities=17% Similarity=0.077 Sum_probs=77.1
Q ss_pred CCCCCccceEEEEECC--EEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccce
Q 006410 15 VAPSPRYQHAAVFVGA--RLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRH 92 (646)
Q Consensus 15 ~~P~pR~~Hsav~v~~--~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~H 92 (646)
.-|..|.+|-+|.-.+ ++|++||+++- .++.+.|.|....+.|..+. ..+..|+ .|.-|
T Consensus 256 ~~p~~RgGHQMV~~~~~~CiYLYGGWdG~----~~l~DFW~Y~v~e~~W~~iN--~~t~~PG-------------~RsCH 316 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQTECVYLYGGWDGT----QDLADFWAYSVKENQWTCIN--RDTEGPG-------------ARSCH 316 (723)
T ss_pred cCccccCcceEEEeCCCcEEEEecCcccc----hhHHHHHhhcCCcceeEEee--cCCCCCc-------------chhhh
Confidence 3478899999998766 99999999763 45677999999999999988 4454454 34449
Q ss_pred EEEEECC--EEEEEcccCCC------CCCCcEEEEeCCCCccccCCCccc
Q 006410 93 ASASIGV--RIYIYGGLKGD------ILLDDFLVAENSPFQSDVNSPLLT 134 (646)
Q Consensus 93 aa~~~~~--~IYVfGG~~~~------~~l~dl~~~D~~~~~~~~~~~~~~ 134 (646)
.++..-. ++|+.|-+-+. ....|+|+||.++-.|...+-..+
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~ 366 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTA 366 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccccc
Confidence 9998765 99999987553 346799999998887775443333
No 96
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.25 E-value=0.00065 Score=69.48 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=46.0
Q ss_pred CeEEEccCCCCH------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCc
Q 006410 343 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 416 (646)
Q Consensus 343 pi~VvGDIHG~~------~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNH 416 (646)
.|.+++|+|+.+ ..|.++++...-...+ -+|+.||++++.+...+.+..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 378999999653 2245555554322222 6899999999876666655555443 345799999999
Q ss_pred ccc
Q 006410 417 EAA 419 (646)
Q Consensus 417 E~~ 419 (646)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 964
No 97
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.13 E-value=0.0016 Score=63.12 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 377 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
.+|++||++++|..+.. +.+|..+ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999986644 4444333 4579999999997543
No 98
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=97.12 E-value=0.035 Score=57.41 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=22.4
Q ss_pred hhHHHHHHHHcCCeEEEecccccccceE
Q 006410 528 PDRVSDFCKRNKLQLIIRAHECVMDGFE 555 (646)
Q Consensus 528 ~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 555 (646)
...+.+.|++.++++++-||.-......
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~ 222 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGR 222 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceE
Confidence 3567788899999999999998765543
No 99
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=97.10 E-value=0.00079 Score=73.65 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=78.5
Q ss_pred CceEEEeCCCCCCCCccceEEEEECC--EEEEEcCCCCCCC--ccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCC
Q 006410 5 GQWEWTLAPGVAPSPRYQHAAVFVGA--RLHVTGGALRGGR--AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEH 80 (646)
Q Consensus 5 g~W~w~~~~g~~P~pR~~Hsav~v~~--~LyV~GG~~~~~~--~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~ 80 (646)
..|..+..-+..|-.|++|.+|.--. +||+.|-+.+... .+..-+++|+||..++.|..+.-- +..-+ |
T Consensus 298 ~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dG----G-- 370 (723)
T KOG2437|consen 298 NQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADG----G-- 370 (723)
T ss_pred ceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccC----C--
Confidence 34766665566899999999997765 9999997654221 122346799999999999887622 11111 1
Q ss_pred CCccccccccceEEEEECCE--EEEEcccCCC---CCCCcEEEEeCCCCccc
Q 006410 81 DPSLELMRRCRHASASIGVR--IYIYGGLKGD---ILLDDFLVAENSPFQSD 127 (646)
Q Consensus 81 ~~~~~~~~R~~Haa~~~~~~--IYVfGG~~~~---~~l~dl~~~D~~~~~~~ 127 (646)
+..-+.|.+++.+++ ||||||..-. ..+.-++.||+.--.|.
T Consensus 371 -----P~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 371 -----PKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred -----cceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 235678999999988 9999997532 45778999997764444
No 100
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=97.09 E-value=0.0011 Score=66.20 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=46.3
Q ss_pred CeEEEccCC-CCH--------------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhcc--
Q 006410 343 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 405 (646)
Q Consensus 343 pi~VvGDIH-G~~--------------~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~-- 405 (646)
+|+.++|+| |.. ..|.++++.......+ .+|+.||++|....+.+.+..+..+-...
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 532 2355555554322222 68999999998876555444433332222
Q ss_pred -CCCeEEecCCcccchh
Q 006410 406 -PENVHLIRGNHEAADI 421 (646)
Q Consensus 406 -P~~v~lLrGNHE~~~i 421 (646)
.-.++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 4579999999997554
No 101
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.03 E-value=0.0018 Score=67.44 Aligned_cols=73 Identities=22% Similarity=0.319 Sum_probs=47.2
Q ss_pred CeEEEccCC-CC------------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-hHHHHHHHHHHhhccCCC
Q 006410 343 PVKVFGDLH-GQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 408 (646)
Q Consensus 343 pi~VvGDIH-G~------------~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-s~evl~lL~~Lk~~~P~~ 408 (646)
.+.+++|+| +. ...|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 478999999 22 45566677666432222 68999999998873 223333333333333457
Q ss_pred eEEecCCcccchh
Q 006410 409 VHLIRGNHEAADI 421 (646)
Q Consensus 409 v~lLrGNHE~~~i 421 (646)
++.+.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998543
No 102
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=97.02 E-value=0.0014 Score=68.22 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=44.7
Q ss_pred eEEEccCCCCHHHHHHHHHHhC---CCCCCCCCceeeEEEeccccCCCC-ChHHHHH------HHHHH------hhccCC
Q 006410 344 VKVFGDLHGQFGDLMRLFDEYG---FPSTAGDITYIDYLFLGDYVDRGQ-HSLETIT------LLLAL------KIEYPE 407 (646)
Q Consensus 344 i~VvGDIHG~~~dL~~il~~~g---~~~~~~~~~~~~~vFLGDyVDRG~-~s~evl~------lL~~L------k~~~P~ 407 (646)
|+|+||+||++..+.+.++... ..+.+ -+|++||+-..+. ...+.+. -+..+ ....|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 6899999999988877554432 12222 6888999975443 3444332 11211 233566
Q ss_pred CeEEecCCcccc
Q 006410 408 NVHLIRGNHEAA 419 (646)
Q Consensus 408 ~v~lLrGNHE~~ 419 (646)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 789999999964
No 103
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.01 E-value=0.0025 Score=72.51 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCeEEEccCC-CCH----HHHHHHHHHh-CCCCCCC--CCceeeEEEeccccCC-CCCh---------------HHHHHH
Q 006410 342 APVKVFGDLH-GQF----GDLMRLFDEY-GFPSTAG--DITYIDYLFLGDYVDR-GQHS---------------LETITL 397 (646)
Q Consensus 342 ~pi~VvGDIH-G~~----~dL~~il~~~-g~~~~~~--~~~~~~~vFLGDyVDR-G~~s---------------~evl~l 397 (646)
..+++++|+| |.- ..+.++++.+ |..+... ...-..+|++||+||. |.++ -++..+
T Consensus 244 ~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~ 323 (504)
T PRK04036 244 VYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEY 323 (504)
T ss_pred cEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHH
Confidence 4689999999 653 2234444433 2221100 0001278999999994 3211 134445
Q ss_pred HHHHhhccCCCeEEecCCcccchhhhhcC-ChHHHHHH-hCCCcchhhhHhhhhhhccCCceEEEcC-cEEEecCCc
Q 006410 398 LLALKIEYPENVHLIRGNHEAADINALFG-FRLECIER-MGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGI 471 (646)
Q Consensus 398 L~~Lk~~~P~~v~lLrGNHE~~~i~~~~g-f~~e~~~~-~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi 471 (646)
|..|. ..-.|++++||||......... +. +++.. +.. .-..++.. |....+++ +++++||-.
T Consensus 324 L~~L~--~~i~V~~ipGNHD~~~~~lPQ~~l~-~~l~~~l~~--------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 324 LKQIP--EDIKIIISPGNHDAVRQAEPQPAFP-EEIRSLFPE--------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHhhh--cCCeEEEecCCCcchhhccCCCCcc-HHHHHhcCc--------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 55543 2246999999999765332221 22 22222 211 01122333 55444444 788999864
No 104
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.95 E-value=0.002 Score=66.71 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=45.4
Q ss_pred CeEEEccCC-CC-----------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHH----HHHHHHhhccC
Q 006410 343 PVKVFGDLH-GQ-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 406 (646)
Q Consensus 343 pi~VvGDIH-G~-----------~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl----~lL~~Lk~~~P 406 (646)
+++.++|+| |. +..|.++++...-...+ -+|+.||++|+...+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 478999999 43 23344454443222222 6899999999987665543 34444443333
Q ss_pred CCeEEecCCcccc
Q 006410 407 ENVHLIRGNHEAA 419 (646)
Q Consensus 407 ~~v~lLrGNHE~~ 419 (646)
-.++++.||||..
T Consensus 76 i~v~~i~GNHD~~ 88 (253)
T TIGR00619 76 IPIVVISGNHDSA 88 (253)
T ss_pred ceEEEEccCCCCh
Confidence 5799999999974
No 105
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.87 E-value=0.0024 Score=63.82 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.5
Q ss_pred eChhHHHHHHHHcCCeEEEeccccccc
Q 006410 526 FGPDRVSDFCKRNKLQLIIRAHECVMD 552 (646)
Q Consensus 526 Fg~~~~~~fl~~n~l~~IiRgHe~v~~ 552 (646)
..+..+.+.++..+.+.+|-||.-...
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~ 202 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPA 202 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 355667778889999999999987643
No 106
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.82 E-value=0.0025 Score=68.92 Aligned_cols=71 Identities=20% Similarity=0.302 Sum_probs=44.7
Q ss_pred CeEEEccCC-CC-----------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC-CChHHHHHHHHH--H--hhcc
Q 006410 343 PVKVFGDLH-GQ-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA--L--KIEY 405 (646)
Q Consensus 343 pi~VvGDIH-G~-----------~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG-~~s~evl~lL~~--L--k~~~ 405 (646)
+++.++|+| |. ...|.++++.+.-...+ -+|++||++|+. +.+.+++.++.. + -...
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 578899999 52 23445554444322222 688999999985 455555544433 1 1223
Q ss_pred CCCeEEecCCcccc
Q 006410 406 PENVHLIRGNHEAA 419 (646)
Q Consensus 406 P~~v~lLrGNHE~~ 419 (646)
+-.|++|.||||..
T Consensus 76 gi~v~~I~GNHD~~ 89 (340)
T PHA02546 76 GITLHVLVGNHDMY 89 (340)
T ss_pred CCeEEEEccCCCcc
Confidence 45799999999974
No 107
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.74 E-value=0.0048 Score=62.59 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=43.8
Q ss_pred CeEEEccCCCC------------HHHHHHHHHHhCCC--CCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCC
Q 006410 343 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 408 (646)
Q Consensus 343 pi~VvGDIHG~------------~~dL~~il~~~g~~--~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~ 408 (646)
++++++|||=. ...|.++++.+.-. ..+ -+|++||+++.|.. +....+.++....+-.
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 37899999922 34567777665332 222 58999999998753 2222222222233557
Q ss_pred eEEecCCcccc
Q 006410 409 VHLIRGNHEAA 419 (646)
Q Consensus 409 v~lLrGNHE~~ 419 (646)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 108
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.00022 Score=76.12 Aligned_cols=209 Identities=9% Similarity=-0.126 Sum_probs=139.0
Q ss_pred eeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccC
Q 006410 375 YIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCL 454 (646)
Q Consensus 375 ~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~L 454 (646)
+...|+++++++++.+.++.+-+-+..++.|-.+....+++|+ ..++++++........+...+|+..++.+..+
T Consensus 48 ~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~-----~~~~~R~~LVlp~l~S~riyvid~~~ep~~~~ 122 (476)
T KOG0918|consen 48 YLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHG-----DSSFKRRYLVLPSLNSGRIYVIDVKTEPRKPS 122 (476)
T ss_pred ceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhcc-----CcchhhhheeecccccCceEEEEeccCcCccc
Confidence 3478999999999999999999999999999889999999994 45666666666666666778889999999999
Q ss_pred CceEEEcCcEEEecCCcCCCCCCHHHhhhccCCcccCCCcccccccccCCCCCCCc--cCCCCCCCCCCCceeeChhH--
Q 006410 455 PLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS--IEGLRPNARGPGLVTFGPDR-- 530 (646)
Q Consensus 455 Plaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~--~~~~~~n~Rg~g~~~Fg~~~-- 530 (646)
+..++.. +++|.||+..|...+...+..+.-..--+.. -..+. |-++.+.+. ...|. .+|.. ..||.|-
T Consensus 123 l~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~--gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwy 195 (476)
T KOG0918|consen 123 LEKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAE--GNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWY 195 (476)
T ss_pred eeeeech-hhHhhcCCcCCcccccccCCCeeEEeecccc--cCCcC-CeEEecCccceecccc--cCCCc-cccccceee
Confidence 9998776 8999999999987666555433211110111 11111 444433210 01111 12211 2233332
Q ss_pred HHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccCCCCCCcEEEEEEcCc--ceEEEEEecC
Q 006410 531 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG--LVVVPKLIHP 597 (646)
Q Consensus 531 ~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~~~~~N~ga~l~i~~~--~~~~~~~~~~ 597 (646)
.-.+......+.+.+.|.-...+...+.++ ++.++..-|.-...+.++.+-++.+ +.+..+.+|.
T Consensus 196 qpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~ 262 (476)
T KOG0918|consen 196 QPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN 262 (476)
T ss_pred ccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccC
Confidence 233555666777788887543333445565 8889999998888899999998775 2344455554
No 109
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=96.55 E-value=0.0031 Score=48.10 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=27.9
Q ss_pred CCEEEEEcccC--CCCCCCcEEEEeCCCCccccC
Q 006410 98 GVRIYIYGGLK--GDILLDDFLVAENSPFQSDVN 129 (646)
Q Consensus 98 ~~~IYVfGG~~--~~~~l~dl~~~D~~~~~~~~~ 129 (646)
+++||||||.+ +...++|+|+||..+.+|+..
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC
Confidence 57899999999 567899999999999888754
No 110
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.50 E-value=0.0067 Score=67.14 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=43.6
Q ss_pred CeEEEccCC-CC-H------HH----HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHH----HHHHHHhhccC
Q 006410 343 PVKVFGDLH-GQ-F------GD----LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 406 (646)
Q Consensus 343 pi~VvGDIH-G~-~------~d----L~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl----~lL~~Lk~~~P 406 (646)
+++.++|+| |. + .+ |.++.+.+.-...+ -+|+.||++|++..+.+.. .++..|+. .+
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~ 74 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TG 74 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cC
Confidence 478899999 53 1 11 22333333222222 6889999999987654433 33444442 23
Q ss_pred CCeEEecCCcccch
Q 006410 407 ENVHLIRGNHEAAD 420 (646)
Q Consensus 407 ~~v~lLrGNHE~~~ 420 (646)
-.|++|.||||...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 56999999999753
No 111
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.48 E-value=0.0086 Score=60.99 Aligned_cols=69 Identities=23% Similarity=0.199 Sum_probs=41.3
Q ss_pred CCeEEEccCC-CCHHHH----------------HHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh---HHHHHHHHHH
Q 006410 342 APVKVFGDLH-GQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS---LETITLLLAL 401 (646)
Q Consensus 342 ~pi~VvGDIH-G~~~dL----------------~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s---~evl~lL~~L 401 (646)
+.+.||+|+| |.-..+ .++.+.......+ .+|++||+++..... -++..+|..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 5688999999 753332 2222222211122 799999999765543 2222333332
Q ss_pred hhccCCCeEEecCCcccch
Q 006410 402 KIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 402 k~~~P~~v~lLrGNHE~~~ 420 (646)
...+++++||||...
T Consensus 89 ----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----FRDLILIRGNHDALI 103 (225)
T ss_pred ----CCcEEEECCCCCCcc
Confidence 247999999999743
No 112
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.47 E-value=0.0088 Score=62.52 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred CeEEEccCC-C-----------CHHHHHHHHHHhCC-C-CCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCC
Q 006410 343 PVKVFGDLH-G-----------QFGDLMRLFDEYGF-P-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 408 (646)
Q Consensus 343 pi~VvGDIH-G-----------~~~dL~~il~~~g~-~-~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~ 408 (646)
.++.++|+| . ....|.++++.+.- . ..+ -+|+.||++|.|. .+-+..++..-...+..
T Consensus 16 ~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~P 87 (275)
T PRK11148 16 RILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRKP 87 (275)
T ss_pred EEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCCc
Confidence 488999999 1 24567777766532 1 122 5889999999874 33333333332344567
Q ss_pred eEEecCCcccc
Q 006410 409 VHLIRGNHEAA 419 (646)
Q Consensus 409 v~lLrGNHE~~ 419 (646)
++++.||||..
T Consensus 88 v~~v~GNHD~~ 98 (275)
T PRK11148 88 CVWLPGNHDFQ 98 (275)
T ss_pred EEEeCCCCCCh
Confidence 99999999973
No 113
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.42 E-value=0.0047 Score=59.17 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=27.4
Q ss_pred eEEEeccccCCCCCh--HH---HHHHHHHHhhcc-CCCeEEecCCcccc
Q 006410 377 DYLFLGDYVDRGQHS--LE---TITLLLALKIEY-PENVHLIRGNHEAA 419 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s--~e---vl~lL~~Lk~~~-P~~v~lLrGNHE~~ 419 (646)
.+||+||++|.+... .+ .+..+..+.... +..++++.||||..
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 699999999987642 12 222222222222 34699999999974
No 114
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=96.40 E-value=0.008 Score=61.31 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceE---EecCCeEEEEeeccccCC
Q 006410 527 GPDRVSDFCKRNKLQLIIRAHECVMDGFE---RFAQGQLITLFSATNYCG 573 (646)
Q Consensus 527 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~---~~~~~~liTvFSa~ny~~ 573 (646)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~ 228 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYL 228 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhc
Confidence 45677888999999999999986532222 11333 56777766553
No 115
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.40 E-value=0.018 Score=59.05 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=26.6
Q ss_pred eEEEeccccCCCC-----C-------hHH----HHHHHHHHhhccCCCeEEecCCcccch
Q 006410 377 DYLFLGDYVDRGQ-----H-------SLE----TITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 377 ~~vFLGDyVDRG~-----~-------s~e----vl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
.+|++||++|+.. . ..+ +..+|..|. ..-.|+++.||||...
T Consensus 38 ~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 38 YLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAVR 95 (243)
T ss_pred EEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCccc
Confidence 7899999999731 0 111 223333332 2357999999999753
No 116
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.012 Score=59.69 Aligned_cols=196 Identities=22% Similarity=0.283 Sum_probs=102.5
Q ss_pred EEccCC-C-CH----HHHHHHHHHhCCCCCCCCCceeeEEEeccccC--CCCC-----hHHHHHHHHHHhhccCCCeEEe
Q 006410 346 VFGDLH-G-QF----GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 412 (646)
Q Consensus 346 VvGDIH-G-~~----~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVD--RG~~-----s~evl~lL~~Lk~~~P~~v~lL 412 (646)
+|+|+| | .- +-|+++++...- ..+ .+.+|||++| .|.. --+|...|..+ ..-+.++|.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~-a~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRL-ARKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHH-HhcCCeEEEe
Confidence 689999 5 22 334455554321 222 6889999998 3332 23445555554 3456789999
Q ss_pred cCCcccchhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEE---cCcEEEecCCcCCCCC------------C
Q 006410 413 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI---EKKIICMHGGIGRSIH------------S 477 (646)
Q Consensus 413 rGNHE~~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i---~~~il~vHGGi~~~~~------------~ 477 (646)
.||||.. +...+ ....| .+.-+|-..++ +.+++++||-.-.... -
T Consensus 74 ~GN~Dfl-l~~~f------~~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDFL-LGKRF------AQEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHHH-HHHHH------HhhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 9999943 22221 11111 12334444433 5799999996543210 0
Q ss_pred HHHhhhccCCcccCCCcccccccccCCCCCCCccCCCCCCCCCCC--ceeeChhHHHHHHHHcCCeEEEecccccccceE
Q 006410 478 VEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG--LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 555 (646)
Q Consensus 478 l~~I~~i~rp~~~~~~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g--~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~ 555 (646)
..+..-+..|+..- ..+..=+|+.- .|.+...... +.-..+.++.+-+++++++.+|-||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R---~ri~~k~r~~s-------~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR---RRIAYKIRSLS-------SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHhh-------HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 11111112222100 01111245443 1221111111 122467788889999999999999987755444
Q ss_pred EecCCeEEEEeeccccC--CCCCCcEEEEEEcCcce
Q 006410 556 RFAQGQLITLFSATNYC--GTANNAGAILVVGRGLV 589 (646)
Q Consensus 556 ~~~~~~liTvFSa~ny~--~~~~N~ga~l~i~~~~~ 589 (646)
.. + ..|| |.--..++++.++.+..
T Consensus 204 i~--~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 IP--G--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred CC--C--------ceEEecCcchhcceEEEEecCcE
Confidence 32 2 1232 33335678898887654
No 117
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=96.27 E-value=0.013 Score=57.98 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.1
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHHhhccCCCeEEecCCcc
Q 006410 377 DYLFLGDYVDRGQH---SLETITLLLALKIEYPENVHLIRGNHE 417 (646)
Q Consensus 377 ~~vFLGDyVDRG~~---s~evl~lL~~Lk~~~P~~v~lLrGNHE 417 (646)
.+|++||+++.+.. +.+.+..++.......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 69999999997765 355555555443444557899999999
No 118
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=96.01 E-value=0.16 Score=52.89 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCCCCCCC--ce-eeChhHHHHHHHHcCCeEEEecccc
Q 006410 514 LRPNARGPG--LV-TFGPDRVSDFCKRNKLQLIIRAHEC 549 (646)
Q Consensus 514 ~~~n~Rg~g--~~-~Fg~~~~~~fl~~n~l~~IiRgHe~ 549 (646)
+.+.+++.| +- .-.++..++.|+..+-.+|.-||+-
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC
Confidence 344444444 11 3478899999999999999999974
No 119
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.98 E-value=0.02 Score=63.32 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=52.7
Q ss_pred CeEEEccCC-CC-----------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhc------
Q 006410 343 PVKVFGDLH-GQ-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE------ 404 (646)
Q Consensus 343 pi~VvGDIH-G~-----------~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~------ 404 (646)
+|.+++|+| |. +..|.++++.+.-...+ -+|+.||++|+..-|.+++..++.+-.+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 588999999 41 45667777766433333 6888999999999999888665554332
Q ss_pred ------------------------------cCCCeEEecCCcccch
Q 006410 405 ------------------------------YPENVHLIRGNHEAAD 420 (646)
Q Consensus 405 ------------------------------~P~~v~lLrGNHE~~~ 420 (646)
..-.||.|-||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1347999999999864
No 120
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=95.85 E-value=1.1 Score=45.28 Aligned_cols=205 Identities=19% Similarity=0.220 Sum_probs=115.2
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEecccc--CCCCChHHHHH-HHHHHhhccCCCeEEecCCccc
Q 006410 342 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETIT-LLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 342 ~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyV--DRG~~s~evl~-lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
..+..+.|+||.++.+.++++.......+ -+|+.||+. +.|+.-.-... .+..++ .+.-.|+.+.||.|.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~ 76 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDP 76 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCCh
Confidence 35889999999999999999887644333 678899999 77764222111 134443 234689999999887
Q ss_pred chhhhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcCCCCC------CHHHhhhccCCcccCC
Q 006410 419 ADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIH------SVEQIEKLERPITMDA 492 (646)
Q Consensus 419 ~~i~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~------~l~~I~~i~rp~~~~~ 492 (646)
..+-.. ....+ ..+.. -...+++-.||-=||..|.-. +-++|....+-.-...
T Consensus 77 ~~v~~~-------l~~~~----~~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~ 135 (226)
T COG2129 77 PEVIDV-------LKNAG----VNVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA 135 (226)
T ss_pred HHHHHH-------HHhcc----ccccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc
Confidence 654322 11111 11111 122344445665677766422 2344544322111101
Q ss_pred CcccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccccC
Q 006410 493 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 572 (646)
Q Consensus 493 ~~~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~ny~ 572 (646)
.. ...=++---|-.+.... ++-| ...-|..++.+++++.+-.+.|-||=--..|++.- |. ||+-.|.-.
T Consensus 136 ~~-~~~Il~~HaPP~gt~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G~--TivVNPG~~ 204 (226)
T COG2129 136 DN-PVNILLTHAPPYGTLLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--GN--TIVVNPGPL 204 (226)
T ss_pred cC-cceEEEecCCCCCcccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--CC--eEEECCCCc
Confidence 00 00011222232211111 2223 12358999999999999999999986556687642 22 666666543
Q ss_pred CCCCCcEEEEEEcCc
Q 006410 573 GTANNAGAILVVGRG 587 (646)
Q Consensus 573 ~~~~N~ga~l~i~~~ 587 (646)
+ .-..|++.+++.
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 3 235688888776
No 121
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.84 E-value=0.029 Score=58.05 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=53.9
Q ss_pred CCCCCCCccceEEEEE---CCE-EEEEcCCCC---CCC-------ccCCCCeEEEEECCCCcEEEcc--CCcCCCCCCCC
Q 006410 13 PGVAPSPRYQHAAVFV---GAR-LHVTGGALR---GGR-------AIEGEAAVAVLDTAAGVWLDRN--GLVTSSRTSKG 76 (646)
Q Consensus 13 ~g~~P~pR~~Hsav~v---~~~-LyV~GG~~~---~~~-------~~~d~~~v~~yD~~t~~W~~~~--~~~~~~~p~~r 76 (646)
-|..|.+||+|++.++ |.. .++|||+.- +.+ .++..-.|+..|++-+.++.-. .+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl--------- 151 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPEL--------- 151 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhh---------
Confidence 3889999999988776 333 577999841 111 1222345788888887765422 12
Q ss_pred CCCCCCccccccccceEEEEECCEEEEEcccCC
Q 006410 77 HGEHDPSLELMRRCRHASASIGVRIYIYGGLKG 109 (646)
Q Consensus 77 ~~~~~~~~~~~~R~~Haa~~~~~~IYVfGG~~~ 109 (646)
...-..|-+.+-++.+|+.||..-
T Consensus 152 ---------~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 152 ---------QDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred ---------cCCeEEEEEEecCceEEEEccEEc
Confidence 124556999999999999999753
No 122
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.73 E-value=0.031 Score=57.93 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.3
Q ss_pred HHHHHHHcCCeEEEecccccccceEEe
Q 006410 531 VSDFCKRNKLQLIIRAHECVMDGFERF 557 (646)
Q Consensus 531 ~~~fl~~n~l~~IiRgHe~v~~G~~~~ 557 (646)
+.+.|++.++++++-||.-...+.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 778899999999999999876664544
No 123
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.67 E-value=0.027 Score=57.30 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=28.9
Q ss_pred eEEEeccccCCCC-----ChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 377 DYLFLGDYVDRGQ-----HSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 377 ~~vFLGDyVDRG~-----~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
++|.+||+-.-.+ ...|+-.++-.++.. .+.+++||||...-
T Consensus 66 ~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 66 RLIILGDLKHEFGKSLRQEKEEVREFLELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred EEEEcCccccccCccccccHHHHHHHHHHhccC---cEEEEeccCCCccc
Confidence 7999999987443 234555555554433 59999999998543
No 124
>PLN02772 guanylate kinase
Probab=95.62 E-value=0.019 Score=62.75 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=36.6
Q ss_pred ccccceEEEEECCEEEEEcccCCCC-CCCcEEEEeCCCCcccc
Q 006410 87 MRRCRHASASIGVRIYIYGGLKGDI-LLDDFLVAENSPFQSDV 128 (646)
Q Consensus 87 ~~R~~Haa~~~~~~IYVfGG~~~~~-~l~dl~~~D~~~~~~~~ 128 (646)
.+|+.|+++++++++|||||.+... ..+++++||+.+..|..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~ 65 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVS 65 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEec
Confidence 4777899999999999999987664 67899999999999763
No 125
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=95.48 E-value=0.051 Score=56.22 Aligned_cols=74 Identities=26% Similarity=0.354 Sum_probs=49.9
Q ss_pred CeEEEccCCCC------HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCC-ChHHHHHHHHHHhhccCCCeEEecCC
Q 006410 343 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ-HSLETITLLLALKIEYPENVHLIRGN 415 (646)
Q Consensus 343 pi~VvGDIHG~------~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~-~s~evl~lL~~Lk~~~P~~v~lLrGN 415 (646)
.++.|+|+|-- ...+..+++.+.....+ -+|+.||+.+.|. ...+-+..++. +...|..+++++||
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGN 74 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGN 74 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCC
Confidence 47889999954 34556666777644434 6999999999963 22222222222 23677889999999
Q ss_pred cccchhhh
Q 006410 416 HEAADINA 423 (646)
Q Consensus 416 HE~~~i~~ 423 (646)
||....+.
T Consensus 75 HD~~~~~~ 82 (301)
T COG1409 75 HDARVVNG 82 (301)
T ss_pred CcCCchHH
Confidence 99876554
No 126
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.035 Score=61.05 Aligned_cols=72 Identities=24% Similarity=0.255 Sum_probs=48.6
Q ss_pred CeEEEccCC-C------------CHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccC---
Q 006410 343 PVKVFGDLH-G------------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYP--- 406 (646)
Q Consensus 343 pi~VvGDIH-G------------~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P--- 406 (646)
++..++|+| | .+..|..+++.+.-...+ -+|+-||++|+..-|.+++.++...-.+.-
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~ 75 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAG 75 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccCC
Confidence 577889999 7 123334444443222222 588899999999999888777665533322
Q ss_pred CCeEEecCCcccch
Q 006410 407 ENVHLIRGNHEAAD 420 (646)
Q Consensus 407 ~~v~lLrGNHE~~~ 420 (646)
-.||+|.||||...
T Consensus 76 Ipv~~I~GNHD~~~ 89 (390)
T COG0420 76 IPVVVIAGNHDSPS 89 (390)
T ss_pred CcEEEecCCCCchh
Confidence 36999999999865
No 127
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=95.22 E-value=0.058 Score=53.60 Aligned_cols=65 Identities=20% Similarity=0.129 Sum_probs=39.7
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh-HHHHHHHHHHhhcc---------------------C
Q 006410 349 DLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEY---------------------P 406 (646)
Q Consensus 349 DIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-~evl~lL~~Lk~~~---------------------P 406 (646)
|++|+=.=|.++++..-....- ..++||||++|.|--+ -|--..+..++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~P-----d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKP-----DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-----CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 4456666677777765432111 1689999999987422 33334444444333 1
Q ss_pred CCeEEecCCccc
Q 006410 407 ENVHLIRGNHEA 418 (646)
Q Consensus 407 ~~v~lLrGNHE~ 418 (646)
-.+++|.||||.
T Consensus 99 i~~i~V~GNHDI 110 (193)
T cd08164 99 TPLINIAGNHDV 110 (193)
T ss_pred ceEEEECCcccC
Confidence 456889999998
No 128
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=95.21 E-value=0.045 Score=57.73 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=45.1
Q ss_pred CeEEEccCCCCHHH--HHHHHHHhCCCCCCCCCceeeEEEeccccCC-CCCh-HHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 343 PVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHS-LETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 343 pi~VvGDIHG~~~d--L~~il~~~g~~~~~~~~~~~~~vFLGDyVDR-G~~s-~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
+|+-++|+|=.... ..+.+........+ -+++.|||+|+ .+.. -.++..|..|+ .|-.+|.+.||||.
T Consensus 46 ~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~--~~~gv~av~GNHd~ 117 (284)
T COG1408 46 KIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLK--APLGVFAVLGNHDY 117 (284)
T ss_pred EEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhh--ccCCEEEEeccccc
Confidence 58999999954433 33333333222222 68999999996 5544 44555565554 45689999999976
Q ss_pred ch
Q 006410 419 AD 420 (646)
Q Consensus 419 ~~ 420 (646)
..
T Consensus 118 ~~ 119 (284)
T COG1408 118 GV 119 (284)
T ss_pred cc
Confidence 43
No 129
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=95.14 E-value=0.045 Score=53.30 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=28.3
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhcc--------CCCeEEecCCcccch
Q 006410 377 DYLFLGDYVDRGQHS--LETITLLLALKIEY--------PENVHLIRGNHEAAD 420 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s--~evl~lL~~Lk~~~--------P~~v~lLrGNHE~~~ 420 (646)
.+||+||++|.+... .+...++..++..+ ...+++|.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 699999999988743 22222332222211 356999999999853
No 130
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=95.10 E-value=0.028 Score=58.89 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=25.3
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceEEecCCeEE
Q 006410 527 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLI 563 (646)
Q Consensus 527 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~li 563 (646)
....+.+.|+++++++++-||.-...-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3456778899999999999998754333333345443
No 131
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=95.00 E-value=0.047 Score=52.14 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=48.8
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcc
Q 006410 345 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 417 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE 417 (646)
.|+||+||+++.+..-++.+.-. .+. +.-+|++||+..-....-+ +.-++.=..+.|--.|++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~gp--Fd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KGP--FDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cCC--eeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998887775321 221 2268889999986665533 44444445678889999999998
No 132
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=0.075 Score=56.71 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=64.3
Q ss_pred CCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCC--CcEEEccCCcCCCCCCCCCCCCCCccccccccce
Q 006410 15 VAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAA--GVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRH 92 (646)
Q Consensus 15 ~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t--~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~H 92 (646)
..|.+--.-+.+.+++.+||-=|..+ .+.+.+|++. ..|++++.-.. .+|-..
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G--------~afy~ldL~~~~k~W~~~a~FpG-----------------~~rnqa 86 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG--------TAFYVLDLKKPGKGWTKIADFPG-----------------GARNQA 86 (381)
T ss_pred CCCccccccccceecceEEEEeccCC--------ccceehhhhcCCCCceEcccCCC-----------------cccccc
Confidence 45666444477888999998545322 1266777764 57999986511 256668
Q ss_pred EEEEECCEEEEEcccCCC-----CCCCcEEEEeCCCCcccc
Q 006410 93 ASASIGVRIYIYGGLKGD-----ILLDDFLVAENSPFQSDV 128 (646)
Q Consensus 93 aa~~~~~~IYVfGG~~~~-----~~l~dl~~~D~~~~~~~~ 128 (646)
.+++++++||||||+... ..++|+++||.++-+|+.
T Consensus 87 ~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~k 127 (381)
T COG3055 87 VAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHK 127 (381)
T ss_pred hheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhhe
Confidence 999999999999998754 348999999998877664
No 133
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.80 E-value=0.033 Score=55.36 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=31.7
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHhhccC----CCeEEecCCccc
Q 006410 377 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEA 418 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s--~evl~lL~~Lk~~~P----~~v~lLrGNHE~ 418 (646)
-+|||||++|.|+.+ .|....+..++..|+ -.++.|.||||-
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI 92 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI 92 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc
Confidence 589999999999853 346666666654433 468899999996
No 134
>smart00612 Kelch Kelch domain.
Probab=94.78 E-value=0.032 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=26.0
Q ss_pred EEEEEcccCCCCCCCcEEEEeCCCCccccCC
Q 006410 100 RIYIYGGLKGDILLDDFLVAENSPFQSDVNS 130 (646)
Q Consensus 100 ~IYVfGG~~~~~~l~dl~~~D~~~~~~~~~~ 130 (646)
+|||+||..+...++++++||..+.+|....
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP 31 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC
Confidence 4899999987677899999999998887543
No 135
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=94.30 E-value=0.37 Score=53.58 Aligned_cols=189 Identities=22% Similarity=0.204 Sum_probs=100.6
Q ss_pred CeEEEccCC-CCHHHHHHHHHH----hCCCCCCCCCceeeEEE-eccccCCC-----C-------ChHHHHHHHHHHhhc
Q 006410 343 PVKVFGDLH-GQFGDLMRLFDE----YGFPSTAGDITYIDYLF-LGDYVDRG-----Q-------HSLETITLLLALKIE 404 (646)
Q Consensus 343 pi~VvGDIH-G~~~dL~~il~~----~g~~~~~~~~~~~~~vF-LGDyVDRG-----~-------~s~evl~lL~~Lk~~ 404 (646)
.+.+++|+| |...-+...|.. ++-+.. .....+|+. .||.||.. . +..|-...+..+-..
T Consensus 227 ~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~ 304 (481)
T COG1311 227 YVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQ 304 (481)
T ss_pred EEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhh
Confidence 478999999 776665554443 333321 122335555 77999942 1 233344445444444
Q ss_pred cCCC--eEEecCCcccchhhhhcCChHHH-HHHhCCCcchhhhHhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHH
Q 006410 405 YPEN--VHLIRGNHEAADINALFGFRLEC-IERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQ 480 (646)
Q Consensus 405 ~P~~--v~lLrGNHE~~~i~~~~gf~~e~-~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~~ 480 (646)
-|.+ |++.+||||........-.+.+. ...| ...+-.|-.=|.-.-+++ .+|..|| .++++
T Consensus 305 vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf---------~~~n~~~v~NP~~~~l~G~~vL~~hG------~sidD 369 (481)
T COG1311 305 VPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLF---------SLNNLLFVSNPALVSLHGVDVLIYHG------RSIDD 369 (481)
T ss_pred CCCCceEEEecCCCCccccccCCCCcchhhcccc---------cccceEecCCCcEEEECCEEEEEecC------CCHHH
Confidence 5554 77899999986554333232222 2222 122212222244444444 6777887 46666
Q ss_pred hhhccCCcccCCCc-------------ccccccccCCCCCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecc
Q 006410 481 IEKLERPITMDAGS-------------IILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAH 547 (646)
Q Consensus 481 I~~i~rp~~~~~~~-------------~~~~dlLWsDP~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgH 547 (646)
|...-...+.+... +..-+-+|.-|...| +| .=.---++++-||
T Consensus 370 ii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l--------VIeevPDv~~~Gh 426 (481)
T COG1311 370 IIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL--------VIEEVPDVFHTGH 426 (481)
T ss_pred HHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce--------eeccCCcEEEEcc
Confidence 65543332221111 112233444443311 01 0011246778899
Q ss_pred cccccceEEecCCeEEEEeeccccC
Q 006410 548 ECVMDGFERFAQGQLITLFSATNYC 572 (646)
Q Consensus 548 e~v~~G~~~~~~~~liTvFSa~ny~ 572 (646)
+.. .|+..+.+.++|..++-+...
T Consensus 427 vh~-~g~~~y~gv~~vns~T~q~qT 450 (481)
T COG1311 427 VHK-FGTGVYEGVNLVNSGTWQEQT 450 (481)
T ss_pred ccc-cceeEEeccceEEeeeecchh
Confidence 986 799988888999888887664
No 136
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.89 E-value=0.12 Score=53.00 Aligned_cols=66 Identities=32% Similarity=0.332 Sum_probs=41.3
Q ss_pred CeEEEccCCCCH---------HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChH-----HHHHHHHHHhhccCCC
Q 006410 343 PVKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPEN 408 (646)
Q Consensus 343 pi~VvGDIHG~~---------~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~-----evl~lL~~Lk~~~P~~ 408 (646)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+- .++..|.++. -
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-----~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNALG-----Y 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhcC-----C
Confidence 478899999887 4556666665322111 14677999999887643 3444444431 2
Q ss_pred eEEecCCccc
Q 006410 409 VHLIRGNHEA 418 (646)
Q Consensus 409 v~lLrGNHE~ 418 (646)
.++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345699996
No 137
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.77 E-value=0.46 Score=45.30 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=29.9
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhh
Q 006410 377 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 422 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~ 422 (646)
.+.+|||+.-.-..--+...++..| |++++|++||||--.-.
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~~ 89 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHPM 89 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCccc
Confidence 6889999987655544444444443 68999999999975433
No 138
>PLN02533 probable purple acid phosphatase
Probab=91.23 E-value=0.33 Score=54.26 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=20.0
Q ss_pred hhHHHHHHHHcCCeEEEeccccc
Q 006410 528 PDRVSDFCKRNKLQLIIRAHECV 550 (646)
Q Consensus 528 ~~~~~~fl~~n~l~~IiRgHe~v 550 (646)
.+.++..|.++++++++-||.-.
T Consensus 311 r~~le~Ll~~~~VdlvlsGH~H~ 333 (427)
T PLN02533 311 KESMETLLYKARVDLVFAGHVHA 333 (427)
T ss_pred HHHHHHHHHHhCCcEEEecceec
Confidence 35788899999999999999875
No 139
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=90.87 E-value=0.33 Score=49.16 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=43.2
Q ss_pred CCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh-------------------------HHHHH
Q 006410 342 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------------------LETIT 396 (646)
Q Consensus 342 ~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-------------------------~evl~ 396 (646)
..|..++|.||+++.|.++.+...-...+ -+||+||++-....+ .|.+.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 45889999999999999988765322222 699999998755433 33333
Q ss_pred HHHHHhhccCCCeEEecCCcccch
Q 006410 397 LLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 397 lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
-++..--..+--+++|+||||...
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SH
T ss_pred HHHHHHHhcCCcEEEecCCCCchH
Confidence 444444456678999999999854
No 140
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=90.51 E-value=0.43 Score=49.81 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHH-cCCeEEEeccccc
Q 006410 530 RVSDFCKR-NKLQLIIRAHECV 550 (646)
Q Consensus 530 ~~~~fl~~-n~l~~IiRgHe~v 550 (646)
...+++++ -++++||-||+-+
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34566666 6899999999865
No 141
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=90.28 E-value=20 Score=37.39 Aligned_cols=178 Identities=16% Similarity=0.234 Sum_probs=86.1
Q ss_pred eEEEeccccCCCCC------------------hHHHHHHHHHHhhccC--CCeEEecCCcccchhhhhcCChHHHHHHhC
Q 006410 377 DYLFLGDYVDRGQH------------------SLETITLLLALKIEYP--ENVHLIRGNHEAADINALFGFRLECIERMG 436 (646)
Q Consensus 377 ~~vFLGDyVDRG~~------------------s~evl~lL~~Lk~~~P--~~v~lLrGNHE~~~i~~~~gf~~e~~~~~~ 436 (646)
++|+.||.|+.-.. ..|.+..+-.+-..-+ -.|.++.||||........--...|+..-.
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s 124 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKS 124 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcc
Confidence 68889999996432 2333333333322222 258899999998776654432222321110
Q ss_pred CCcchhhhHhhhhhhccCCceEEEcC-cEEEecCCcCCCCCCHHHhhhccC---Cccc-------CCCcccccccccCCC
Q 006410 437 ENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLER---PITM-------DAGSIILMDLLWSDP 505 (646)
Q Consensus 437 ~~~~~~~~~~~~~~f~~LPlaa~i~~-~il~vHGGi~~~~~~l~~I~~i~r---p~~~-------~~~~~~~~dlLWsDP 505 (646)
. .+..+ .+-.=|....+++ +++.+|| +++++|.+.-. ++++ ..-.+..-|-||.=|
T Consensus 125 ~-----~~~~~--~~vtNP~~~~i~g~~vLgtsG------qni~Di~ky~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP 191 (257)
T cd07387 125 S-----NYSTL--NLVTNPYEFSIDGVRVLGTSG------QNVDDILKYSSLESRLDILERTLKWRHIAPTAPDTLWCYP 191 (257)
T ss_pred c-----ccCCc--EEeCCCeEEEECCEEEEEECC------CCHHHHHHhCCCCCHHHHHHHHHHhcccCCCCCCcccccc
Confidence 0 01111 1112266666665 6777777 34555544311 1110 000113345566665
Q ss_pred CCCCccCCCCCCCCCCCceeeChhHHHHHHHHcCCeEEEecccccccceEEec--CCeEEEEeeccccCCCCCCcEEEEE
Q 006410 506 TENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFA--QGQLITLFSATNYCGTANNAGAILV 583 (646)
Q Consensus 506 ~~~~~~~~~~~n~Rg~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~--~~~liTvFSa~ny~~~~~N~ga~l~ 583 (646)
-.+. +.|.-.. ==..++-|||.. -|.+.+. +++-+.+.|.|.|.. .|.+++
T Consensus 192 ~~~~--Dpfvi~~--------------------~PhVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~vl 244 (257)
T cd07387 192 FTDR--DPFILEE--------------------CPHVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAVL 244 (257)
T ss_pred CCCC--CceeecC--------------------CCCEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEEE
Confidence 3211 1111100 023455678865 3555443 366778888898854 344444
Q ss_pred E-cCcceEEEEE
Q 006410 584 V-GRGLVVVPKL 594 (646)
Q Consensus 584 i-~~~~~~~~~~ 594 (646)
+ =+++.+.+..
T Consensus 245 vdl~tLe~~~v~ 256 (257)
T cd07387 245 VNLRTLECEPIS 256 (257)
T ss_pred EECCcCcEEEEe
Confidence 4 4567766543
No 142
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=87.36 E-value=1.1 Score=49.19 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=31.7
Q ss_pred eEEEeccccCCCCC--hHHHHHHHHHHhhccCC----CeEEecCCccc
Q 006410 377 DYLFLGDYVDRGQH--SLETITLLLALKIEYPE----NVHLIRGNHEA 418 (646)
Q Consensus 377 ~~vFLGDyVDRG~~--s~evl~lL~~Lk~~~P~----~v~lLrGNHE~ 418 (646)
-++|||||+|-|.. .-|--.....+|..|+. .+..+.||||-
T Consensus 96 vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 96 VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 57889999998874 34555566666666664 68889999996
No 143
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=87.20 E-value=1.2 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.6
Q ss_pred hhHHHHHHHHcCCeEEEeccccc
Q 006410 528 PDRVSDFCKRNKLQLIIRAHECV 550 (646)
Q Consensus 528 ~~~~~~fl~~n~l~~IiRgHe~v 550 (646)
...+.+++++.++++++-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 35678899999999999999865
No 144
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=85.21 E-value=1.3 Score=46.69 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=40.2
Q ss_pred CeEEEccCCCCHHH--------------HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-h-----HHHHHHHHHHh
Q 006410 343 PVKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALK 402 (646)
Q Consensus 343 pi~VvGDIHG~~~d--------------L~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-s-----~evl~lL~~Lk 402 (646)
.|+.+.|+||++.. |..+++........ .-+|..||+++..+. + -.++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 36789999998653 55556554322111 257779999987654 2 23455555553
Q ss_pred hccCCCeEEecCCccc
Q 006410 403 IEYPENVHLIRGNHEA 418 (646)
Q Consensus 403 ~~~P~~v~lLrGNHE~ 418 (646)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 355599996
No 145
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=84.82 E-value=1.9 Score=44.64 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=38.0
Q ss_pred CeEEEccCCCCHH----------HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh-----HHHHHHHHHHhhccCC
Q 006410 343 PVKVFGDLHGQFG----------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPE 407 (646)
Q Consensus 343 pi~VvGDIHG~~~----------dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-----~evl~lL~~Lk~~~P~ 407 (646)
.|+-+.|+||++. .|..+++...-.+ ..-+|..||+++..+.+ ..++..|-.+. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~------~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLD------NDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcC------CEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 3678899999853 4555565543211 12567799999976533 22333333321 2
Q ss_pred CeEEecCCccc
Q 006410 408 NVHLIRGNHEA 418 (646)
Q Consensus 408 ~v~lLrGNHE~ 418 (646)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 34 45699996
No 146
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=81.98 E-value=1.4 Score=50.63 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHcCCe----EEEecccccc--cceE-EecCCeEEEE---eeccccCCCCCCcEEEEEEcCcceEEEEEec
Q 006410 527 GPDRVSDFCKRNKLQ----LIIRAHECVM--DGFE-RFAQGQLITL---FSATNYCGTANNAGAILVVGRGLVVVPKLIH 596 (646)
Q Consensus 527 g~~~~~~fl~~n~l~----~IiRgHe~v~--~G~~-~~~~~~liTv---FSa~ny~~~~~N~ga~l~i~~~~~~~~~~~~ 596 (646)
.++..+..|+..||+ .||-||.+|. +|=. .-++||++.| ||.. |-...+= |.+-.|.+...+....-+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGI-AGYTLiyNS~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGI-AGYTLIYNSYGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCc-cceEEEecCCcceeccCC
Confidence 567788899999999 9999999986 5643 4689999999 7664 5444333 444455444444443444
Q ss_pred C
Q 006410 597 P 597 (646)
Q Consensus 597 ~ 597 (646)
|
T Consensus 585 p 585 (640)
T PF06874_consen 585 P 585 (640)
T ss_pred C
Confidence 4
No 147
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=81.28 E-value=3.2 Score=43.05 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHHhhccCCCeEEecCCccc
Q 006410 378 YLFLGDYVDRGQHSL-----ETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 378 ~vFLGDyVDRG~~s~-----evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
+|..||+++..+.+. .++.+|-.+ +-. .+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g~d-a~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----GVD-AMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----CCe-EEe-ccccc
Confidence 456999998876432 334444443 223 333 99996
No 148
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=78.96 E-value=6.3 Score=34.68 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeee
Q 006410 288 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 340 (646)
Q Consensus 288 ~~~~~~~~i~~l~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~~l~l 340 (646)
...+++.+|+.+-..+ .|+...+..|+.++.++|+++|+++++
T Consensus 53 t~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 53 TLEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp -HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 3456788888876543 478889999999999999999999985
No 149
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=78.17 E-value=4.5 Score=42.54 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=29.1
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHHhhccC-CCeEEecCCcccchh
Q 006410 377 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYP-ENVHLIRGNHEAADI 421 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s~--e------vl~lL~~Lk~~~P-~~v~lLrGNHE~~~i 421 (646)
-+|+.||+|+.+.... + .-.+...++..+| -.|+.+.||||....
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~ 124 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPV 124 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcc
Confidence 5888999998876421 1 2223333444444 369999999998644
No 150
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.99 E-value=8 Score=36.78 Aligned_cols=104 Identities=29% Similarity=0.380 Sum_probs=68.7
Q ss_pred eEEEccCC--CCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchh
Q 006410 344 VKVFGDLH--GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 421 (646)
Q Consensus 344 i~VvGDIH--G~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i 421 (646)
+.++||+| -.-.+|-.-|++.-.|.. + ..++++|++ -+-|++.+|..+. ..++++||-.|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgk---i--~hilctGNl-----cs~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGK---I--QHILCTGNL-----CSKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCc---e--eEEEEeCCc-----chHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 56899999 445566666666655533 2 178999996 4679999998875 6899999987753
Q ss_pred hhhcCChHHHHHHhCCCcchhhhHhhhhhhccCCceEEEcCcEEEecCCcCCCCCCHHHhhhccCCccc
Q 006410 422 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM 490 (646)
Q Consensus 422 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LPlaa~i~~~il~vHGGi~~~~~~l~~I~~i~rp~~~ 490 (646)
.+|.+.. ...+-.=+|=||||-.--...+.+.+.-+.|-+++
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2232210 00111227889999765444677888888886654
No 151
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.17 E-value=4.6 Score=41.70 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=42.5
Q ss_pred ECCEEEEEcCCCCCCCccCCCCeEEEEECCC----CcEEEccC-CcCCCCCCCCCCCCCCccccccccceEEEEE-CCEE
Q 006410 28 VGARLHVTGGALRGGRAIEGEAAVAVLDTAA----GVWLDRNG-LVTSSRTSKGHGEHDPSLELMRRCRHASASI-GVRI 101 (646)
Q Consensus 28 v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t----~~W~~~~~-~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~-~~~I 101 (646)
-+++++++||..++. ..+-.|++.+ ..|.+... | ..+|+..+++.+ +|++
T Consensus 76 ~dG~ll~tGG~~~G~------~~ir~~~p~~~~~~~~w~e~~~~m------------------~~~RWYpT~~~L~DG~v 131 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGN------KAIRIFTPCTSDGTCDWTESPNDM------------------QSGRWYPTATTLPDGRV 131 (243)
T ss_pred CCCCEEEeCCCCccc------cceEEEecCCCCCCCCceECcccc------------------cCCCccccceECCCCCE
Confidence 378999999986532 3366788765 67887652 4 358998888887 6899
Q ss_pred EEEcccC
Q 006410 102 YIYGGLK 108 (646)
Q Consensus 102 YVfGG~~ 108 (646)
+|.||..
T Consensus 132 lIvGG~~ 138 (243)
T PF07250_consen 132 LIVGGSN 138 (243)
T ss_pred EEEeCcC
Confidence 9999977
No 152
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=74.20 E-value=4.9 Score=50.72 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=38.8
Q ss_pred CeEEEccCCCCH---HHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh-----HHHHHHHHHHhhccCCCeEEecC
Q 006410 343 PVKVFGDLHGQF---GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 414 (646)
Q Consensus 343 pi~VvGDIHG~~---~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-----~evl~lL~~Lk~~~P~~v~lLrG 414 (646)
.|+.+.|+||.+ ..+..+++...-...+ .-+|..||+++..+.+ ..++.+|-++ +--++..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 378899999986 3444444443211111 1233489999987644 2344444443 23356899
Q ss_pred Cccc
Q 006410 415 NHEA 418 (646)
Q Consensus 415 NHE~ 418 (646)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 153
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=71.58 E-value=9.8 Score=39.92 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHc-CCeEEEeccccc
Q 006410 527 GPDRVSDFCKRN-KLQLIIRAHECV 550 (646)
Q Consensus 527 g~~~~~~fl~~n-~l~~IiRgHe~v 550 (646)
|.+.-.++.++. ++++||-||+-+
T Consensus 193 G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 193 GYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred CchhHHHHHHcCCCCcEEEeCCcCc
Confidence 444334555554 799999988654
No 154
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=69.32 E-value=14 Score=39.89 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.5
Q ss_pred eEEEeccccCCCC--ChHHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 377 DYLFLGDYVDRGQ--HSLETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 377 ~~vFLGDyVDRG~--~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
-+||+||.|+.-. +...++...++=.+.+.=-...+.||||...
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 6999999999722 3344454444444555455678999999753
No 155
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=67.36 E-value=7.6 Score=38.52 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=37.1
Q ss_pred eEEEccCCCC-----HHHHHHHHHHhC-CCCCCCCCceeeEEEeccccCCCCChH-------------HHHHHHHHHhhc
Q 006410 344 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 404 (646)
Q Consensus 344 i~VvGDIHG~-----~~dL~~il~~~g-~~~~~~~~~~~~~vFLGDyVDRG~~s~-------------evl~lL~~Lk~~ 404 (646)
|+|++|+|=. ++.|.++|..+. -.... .+|++|+++|.-.... +.+..+..+...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5788888833 556666676554 22222 7999999999633221 111122222111
Q ss_pred c--CCCeEEecCCcccchh
Q 006410 405 Y--PENVHLIRGNHEAADI 421 (646)
Q Consensus 405 ~--P~~v~lLrGNHE~~~i 421 (646)
. --+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 1 2579999999997655
No 156
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.92 E-value=13 Score=41.49 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=53.8
Q ss_pred cCCeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCc
Q 006410 341 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 416 (646)
Q Consensus 341 ~~pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNH 416 (646)
.+.|.||||.-|.++.|.+-.+.+.-. .|. +.-++++|++++--.++-|++.+.... ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk--~Gp--Fd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKK--SGP--FDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhc--CCC--ceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 368999999999999998877765322 121 226888999999877888888887664 46787788887765
No 157
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=63.39 E-value=14 Score=38.16 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-----hHHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 352 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 352 G~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-----s~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
|-+..+..+++...-...+ .-+|..||+++..+. ...++..|-.+. --+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 4466677777765432111 146779999987753 234555555543 23567899996
No 158
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=61.57 E-value=21 Score=38.66 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=35.4
Q ss_pred CCCceEEEeCCCCCCCCccc-------eEEEEE-CCEEEEE-cCCCCCCCccCCCCeEEEEECCCCcEEEcc
Q 006410 3 RNGQWEWTLAPGVAPSPRYQ-------HAAVFV-GARLHVT-GGALRGGRAIEGEAAVAVLDTAAGVWLDRN 65 (646)
Q Consensus 3 r~g~W~w~~~~g~~P~pR~~-------Hsav~v-~~~LyV~-GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~ 65 (646)
....|.|...|. +|-.+.. .+-+++ |..|+|. -|.. ...|.||+++.+|.+..
T Consensus 154 ~~~~w~W~~LP~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 154 PEESWSWRSLPP-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred CCCcceEEcCCC-CCccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCcceeecc
Confidence 467899999873 4444332 244556 6778873 2221 23899999999999875
No 159
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=58.33 E-value=15 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=13.9
Q ss_pred HHHHH---cCCeEEEecccccc
Q 006410 533 DFCKR---NKLQLIIRAHECVM 551 (646)
Q Consensus 533 ~fl~~---n~l~~IiRgHe~v~ 551 (646)
++.++ .++++||=||.-+.
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCcc
Confidence 45555 48999999997653
No 160
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=58.24 E-value=14 Score=39.91 Aligned_cols=72 Identities=25% Similarity=0.380 Sum_probs=44.3
Q ss_pred CeEEEccCCCCHHHHHHHHHH---hCCCCCCCCCceeeEEEeccccC-CCCC---hHHH---------HHHHHHHhhccC
Q 006410 343 PVKVFGDLHGQFGDLMRLFDE---YGFPSTAGDITYIDYLFLGDYVD-RGQH---SLET---------ITLLLALKIEYP 406 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~---~g~~~~~~~~~~~~~vFLGDyVD-RG~~---s~ev---------l~lL~~Lk~~~P 406 (646)
+|.|-|=-||+++.+-+-+.. .|-.+-+ -++++||+=. |... ++.| +.--+.=.+..|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 578899999999998855444 3322333 6888999854 3222 2221 111222234466
Q ss_pred CCeEEecCCcccch
Q 006410 407 ENVHLIRGNHEAAD 420 (646)
Q Consensus 407 ~~v~lLrGNHE~~~ 420 (646)
=--++|=||||.+.
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 66788999999875
No 161
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=55.42 E-value=1e+02 Score=30.82 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=54.1
Q ss_pred CCCceEEEeCCCCCCCCccceEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEE-ccCCcCCCCCCCCCCCCC
Q 006410 3 RNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD-RNGLVTSSRTSKGHGEHD 81 (646)
Q Consensus 3 r~g~W~w~~~~g~~P~pR~~Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~-~~~~~~~~~p~~r~~~~~ 81 (646)
+++.|+-+... .+.....+..+++++.||-+.-...+. ....+..||..+.+|.. ++ + |.....
T Consensus 78 ~~~~Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~----~~~~IvsFDl~~E~f~~~i~-~-----P~~~~~--- 142 (230)
T TIGR01640 78 GSNSWRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKTN----PDYFIVSFDVSSERFKEFIP-L-----PCGNSD--- 142 (230)
T ss_pred CCCCccccccC--CCCccccCCeEEECCEEEEEEEECCCC----CcEEEEEEEcccceEeeeee-c-----Cccccc---
Confidence 35678766532 222122223788999998886432211 01258899999999995 43 1 111110
Q ss_pred CccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEe
Q 006410 82 PSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAE 120 (646)
Q Consensus 82 ~~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D 120 (646)
.......+.++|+|.+........ .-++|+++
T Consensus 143 ------~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWvl~ 174 (230)
T TIGR01640 143 ------SVDYLSLINYKGKLAVLKQKKDTN-NFDLWVLN 174 (230)
T ss_pred ------cccceEEEEECCEEEEEEecCCCC-cEEEEEEC
Confidence 112245677789988876543221 24788876
No 162
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=54.32 E-value=17 Score=41.53 Aligned_cols=71 Identities=25% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCeEEEccCCCCHH------------HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCC------ChHHHHHHHHHHhh
Q 006410 342 APVKVFGDLHGQFG------------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ------HSLETITLLLALKI 403 (646)
Q Consensus 342 ~pi~VvGDIHG~~~------------dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~------~s~evl~lL~~Lk~ 403 (646)
-.|+-..|+||++. -+-++.........+.. ..-+|=.||+++..+ ....++.+|-.|+.
T Consensus 27 l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~y 104 (517)
T COG0737 27 LTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGY 104 (517)
T ss_pred EEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcCC
Confidence 35888999999998 33333322211111110 113444999999844 33456666666642
Q ss_pred ccCCCeEEecCCcccc
Q 006410 404 EYPENVHLIRGNHEAA 419 (646)
Q Consensus 404 ~~P~~v~lLrGNHE~~ 419 (646)
=.+-.||||.-
T Consensus 105 -----Da~tiGNHEFd 115 (517)
T COG0737 105 -----DAMTLGNHEFD 115 (517)
T ss_pred -----cEEeecccccc
Confidence 25678999973
No 163
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=53.02 E-value=16 Score=40.72 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=32.7
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccch
Q 006410 377 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 420 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~ 420 (646)
.+-.+||+.||||++--++.-|..+ ..+-+-.||||-..
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilW 231 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILW 231 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEE
Confidence 5778999999999999999888776 37788899999543
No 164
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=51.98 E-value=44 Score=34.57 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=25.4
Q ss_pred EEEeCCCCCCCCccceEEEEE-CCEEEEEcCCC
Q 006410 8 EWTLAPGVAPSPRYQHAAVFV-GARLHVTGGAL 39 (646)
Q Consensus 8 ~w~~~~g~~P~pR~~Hsav~v-~~~LyV~GG~~ 39 (646)
+|.+.+..|..+|+..+++.+ +++++|+||..
T Consensus 106 ~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 106 DWTESPNDMQSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CceECcccccCCCccccceECCCCCEEEEeCcC
Confidence 466655568899999987766 68999999975
No 165
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=51.90 E-value=23 Score=37.39 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=23.1
Q ss_pred eEEEeccccCCCCCh-------HHHHHHHHHHhhccCCCeEEecCCcccc
Q 006410 377 DYLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s-------~evl~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
-+|..||+++.-+.+ .-++.++-.+ +-=.+..||||..
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 355699999865432 2234444444 2446778999983
No 166
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=51.59 E-value=43 Score=35.51 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=48.8
Q ss_pred CCeEEEccCC----CCHHHHHHHHHHhC-CCCCCCCCceeeEEEeccccCCC----CChH----HHHHHHHHH-hhccC-
Q 006410 342 APVKVFGDLH----GQFGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHSL----ETITLLLAL-KIEYP- 406 (646)
Q Consensus 342 ~pi~VvGDIH----G~~~dL~~il~~~g-~~~~~~~~~~~~~vFLGDyVDRG----~~s~----evl~lL~~L-k~~~P- 406 (646)
..++|+||+| -.++.|.++|..+. .-+++ . ...-+||+|+++-+. ..+. |-+.-|..| ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 4589999999 45677888888873 21211 1 123799999998763 2222 333344432 23455
Q ss_pred ----CCeEEecCCcccc
Q 006410 407 ----ENVHLIRGNHEAA 419 (646)
Q Consensus 407 ----~~v~lLrGNHE~~ 419 (646)
.++++|.|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 7899999999974
No 167
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=49.43 E-value=37 Score=35.56 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=45.0
Q ss_pred CeEEEccCCCC--HHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCC-CChHHHHHHHHHHhhccCCCeEEecCCcccc
Q 006410 343 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 343 pi~VvGDIHG~--~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG-~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
.|.++|||=|. ...|...|..+......+ -+|..||...-| --+-+++..|+.+- -.++.+ |||+..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~G----vDviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSG----VNYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcC----CCEEEc-cchhcc
Confidence 47899999999 456666666654322221 345579999766 45678888887653 355665 999974
No 168
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=45.03 E-value=63 Score=34.14 Aligned_cols=62 Identities=6% Similarity=0.062 Sum_probs=40.9
Q ss_pred CeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEE-EECCEEEEEcccCCCC-CCCcEEEEeCCCCcc
Q 006410 49 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASA-SIGVRIYIYGGLKGDI-LLDDFLVAENSPFQS 126 (646)
Q Consensus 49 ~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~-~~~~~IYVfGG~~~~~-~l~dl~~~D~~~~~~ 126 (646)
..+..||+.+.+|..+..-..|. - ++.. +-+++|||.|-+.-.. .-..+..||..+-.|
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~------------------V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGT------------------V-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEE------------------E-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 44889999999999876332221 1 3333 3478899988765443 455677888887776
Q ss_pred ccC
Q 006410 127 DVN 129 (646)
Q Consensus 127 ~~~ 129 (646)
...
T Consensus 77 ~~~ 79 (281)
T PF12768_consen 77 SSL 79 (281)
T ss_pred eec
Confidence 543
No 169
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=43.44 E-value=45 Score=32.92 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=41.5
Q ss_pred CCeEEEccCC-CCHHHHHHHHHHhCCCCCCCCCceeeEEEecccc--CCCCChHHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 342 APVKVFGDLH-GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 342 ~pi~VvGDIH-G~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyV--DRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
.|.-|+|+=- |.-+.+.+-....- .+++ .++.-||+- -|=++..+-+.+|-+| |+.=+++|||||.
T Consensus 17 KpM~vFGe~W~gh~ekI~k~W~~~v-~~eD------iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDY 85 (230)
T COG1768 17 KPMEVFGEPWSGHHEKIKKHWRSKV-SPED------IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDY 85 (230)
T ss_pred CceeecCCcccCchHHHHHHHHhcC-Chhh------EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcc
Confidence 4566666633 44444433332221 2222 466678875 3556667777777665 7899999999997
Q ss_pred ch
Q 006410 419 AD 420 (646)
Q Consensus 419 ~~ 420 (646)
..
T Consensus 86 Ww 87 (230)
T COG1768 86 WW 87 (230)
T ss_pred cc
Confidence 54
No 170
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=43.38 E-value=39 Score=36.17 Aligned_cols=69 Identities=22% Similarity=0.120 Sum_probs=38.2
Q ss_pred eEEEccCCCCHH------HHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCC-------------hHHHHHHHHHHhhc
Q 006410 344 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 404 (646)
Q Consensus 344 i~VvGDIHG~~~------dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~-------------s~evl~lL~~Lk~~ 404 (646)
|+-+.|+||++. .+..+++...-..... -...-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~-~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAAE-YDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhcc-CCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 567889999964 3333344331110000 011256679999876543 334455555554
Q ss_pred cCCCeEEecCCccc
Q 006410 405 YPENVHLIRGNHEA 418 (646)
Q Consensus 405 ~P~~v~lLrGNHE~ 418 (646)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33667899996
No 171
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=42.72 E-value=1.9e+02 Score=31.32 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=36.6
Q ss_pred EEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEc
Q 006410 26 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 105 (646)
Q Consensus 26 v~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~~~~IYVfG 105 (646)
++.+.+|+..+.. ....+||++|..=...+.+ ..+...-.++.++++|||..
T Consensus 73 al~gskIv~~d~~----------~~t~vyDt~t~av~~~P~l------------------~~pk~~pisv~VG~~LY~m~ 124 (342)
T PF07893_consen 73 ALHGSKIVAVDQS----------GRTLVYDTDTRAVATGPRL------------------HSPKRCPISVSVGDKLYAMD 124 (342)
T ss_pred EecCCeEEEEcCC----------CCeEEEECCCCeEeccCCC------------------CCCCcceEEEEeCCeEEEee
Confidence 3358898888654 1278899998765433332 11233347778899999998
Q ss_pred ccCC
Q 006410 106 GLKG 109 (646)
Q Consensus 106 G~~~ 109 (646)
....
T Consensus 125 ~~~~ 128 (342)
T PF07893_consen 125 RSPF 128 (342)
T ss_pred ccCc
Confidence 7654
No 172
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=39.11 E-value=43 Score=42.47 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.2
Q ss_pred hhHHHHHHHH-cCCeEEEeccccc
Q 006410 528 PDRVSDFCKR-NKLQLIIRAHECV 550 (646)
Q Consensus 528 ~~~~~~fl~~-n~l~~IiRgHe~v 550 (646)
++++.+..++ -+++.||=||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 3455566655 4899999999743
No 173
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=38.42 E-value=54 Score=38.82 Aligned_cols=68 Identities=18% Similarity=0.066 Sum_probs=40.0
Q ss_pred cCCeEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChH------------
Q 006410 341 RAPVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL------------ 392 (646)
Q Consensus 341 ~~pi~VvGDIHG~~~d----------------L~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~------------ 392 (646)
.-.|.-..|+||++.. +-.+++...-.. ...-+|-.||.+...+.+-
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~ 99 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-----KNSVLVDNGDLIQGSPLGDYMAAKGLKAGDV 99 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-----CCEEEEECCCcCCCchhhhhhhhccccCCCc
Confidence 4457889999999743 223333332110 1124666999998665431
Q ss_pred -HHHHHHHHHhhccCCCeEEecCCccc
Q 006410 393 -ETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 393 -evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
-++..+-.|. .=....||||.
T Consensus 100 ~p~i~amN~lg-----yDa~tlGNHEF 121 (649)
T PRK09420 100 HPVYKAMNTLD-----YDVGNLGNHEF 121 (649)
T ss_pred chHHHHHHhcC-----CcEEeccchhh
Confidence 2455555553 44677899996
No 174
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=38.13 E-value=79 Score=32.88 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=41.3
Q ss_pred CeEEEccCCCCHHH--HHHHHHHhCCCCCCCCCceeeEEEeccccCCC-CChHHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 343 PVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 343 pi~VvGDIHG~~~d--L~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG-~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
.|.++|||=|.... +...|....-.... + -+|-.||..--| .-+-++...|..+.. .+..+ ||||.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~f 69 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-D----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTW 69 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-C----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-ccccc
Confidence 37899999998643 34445444211111 0 344479998766 367788888877653 44555 99986
No 175
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.89 E-value=1.3e+02 Score=29.87 Aligned_cols=92 Identities=23% Similarity=0.303 Sum_probs=62.2
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEEecCCcccchhhhhcCChH---HHHHHh---------CCCcchhh
Q 006410 376 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRL---ECIERM---------GENDGIWA 443 (646)
Q Consensus 376 ~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~lLrGNHE~~~i~~~~gf~~---e~~~~~---------~~~~~~~~ 443 (646)
..+|||| -|-+--|.+.||-+|+.+|-.+.++ .|+-|.+..+..-.|.. +|..++ +...-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 4799997 5889999999999999999766555 89999998876554431 111111 11112235
Q ss_pred hHhhhhhhccCCceEEEcCcEEEecC-CcC
Q 006410 444 WTRFNQLFNCLPLAALIEKKIICMHG-GIG 472 (646)
Q Consensus 444 ~~~~~~~f~~LPlaa~i~~~il~vHG-Gi~ 472 (646)
|..+..+.-.+++...+-..++.|-| |-.
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NGPGTC 144 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNGPGTC 144 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECCCCcE
Confidence 66677777777777777667777777 543
No 176
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=36.34 E-value=58 Score=38.40 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=37.5
Q ss_pred CeEEEccCCCCHHH----------------HHHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh-------------HH
Q 006410 343 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LE 393 (646)
Q Consensus 343 pi~VvGDIHG~~~d----------------L~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-------------~e 393 (646)
.|.-..||||++.. +..+++...-.. ...-+|-.||.+..-+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-----KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-----CCeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 46778999999753 233333332111 112466699999865433 12
Q ss_pred HHHHHHHHhhccCCCeEEecCCccc
Q 006410 394 TITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 394 vl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
++.+|-.|. -=....||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 344444443 33567899996
No 177
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=35.46 E-value=46 Score=38.47 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.7
Q ss_pred HHHHHc---CCeEEEeccccc
Q 006410 533 DFCKRN---KLQLIIRAHECV 550 (646)
Q Consensus 533 ~fl~~n---~l~~IiRgHe~v 550 (646)
++.++. ++++||=||+-.
T Consensus 236 ~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 236 EMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred HHHHhCCccCceEEEeCCCCc
Confidence 455555 799999999863
No 178
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=34.44 E-value=81 Score=36.52 Aligned_cols=37 Identities=24% Similarity=0.089 Sum_probs=23.6
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 377 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s-----~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
-+|..||.+...+.+ ..++.+|-++. -=....||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~g-----~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAAG-----FDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhccC-----CCEEEeccccc
Confidence 566799998765422 23344444443 44778899996
No 179
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=33.57 E-value=43 Score=34.63 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHcCCeEEEecccccccceEEecCCeEEEEeeccc
Q 006410 527 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATN 570 (646)
Q Consensus 527 g~~~~~~fl~~n~l~~IiRgHe~v~~G~~~~~~~~liTvFSa~n 570 (646)
...-+..||+.+|..+. +|++..||.|+.++-+|+||---.
T Consensus 139 ~~~~~~~fl~~lGy~~~---~Eyv~~G~~F~~g~i~I~l~ri~~ 179 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRFD---YEYVVEGYRFFKGDIVIELFRIFK 179 (250)
T ss_dssp SSSSHHHHHHHTTEEEE---EEEEEEEEEEEECCEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCceE---EEEEEEEEEEEECCEEEEEEEEEe
Confidence 45678899999998765 999999999999998888876433
No 180
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=33.00 E-value=4.3e+02 Score=26.24 Aligned_cols=62 Identities=8% Similarity=-0.084 Sum_probs=38.7
Q ss_pred CeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEcccCCCCCCCcEEEEeCCCCccc
Q 006410 49 AAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSD 127 (646)
Q Consensus 49 ~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~~~~IYVfGG~~~~~~l~dl~~~D~~~~~~~ 127 (646)
..+++|+..++.|..+... +.. ....+. .+.++|.||-+.-.........+..||..+-+..
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~---~~~-------------~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~ 131 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECS---PPH-------------HPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFK 131 (230)
T ss_pred ccEEEEEeCCCCccccccC---CCC-------------ccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEe
Confidence 4589999999999987622 110 011122 6778999998875432211125888998875544
No 181
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=32.44 E-value=40 Score=30.12 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCceeeChhHHHHHHHHcCCeEEEecccccccceEE------ecCCeEEEEeec---cccCCCCCCcEEEEEEcCcc
Q 006410 520 GPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFER------FAQGQLITLFSA---TNYCGTANNAGAILVVGRGL 588 (646)
Q Consensus 520 g~g~~~Fg~~~~~~fl~~n~l~~IiRgHe~v~~G~~~------~~~~~liTvFSa---~ny~~~~~N~ga~l~i~~~~ 588 (646)
.+|.+.+|.+.+.+-+++...+++|.+-++-+++-+- +++-.+++.|+. ..-||. .+.+++.+.+.++
T Consensus 14 rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 14 KAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 3455789999999999999999999999998887542 234567777775 245775 3477777777654
No 182
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=31.85 E-value=1.3e+02 Score=34.54 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=35.8
Q ss_pred CeEEEccCC-C-----------CHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHH
Q 006410 343 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLAL 401 (646)
Q Consensus 343 pi~VvGDIH-G-----------~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~L 401 (646)
+|.|..|+| | .|..|..||..+.-...+ -+|.=||++.--.-|-++|.-.+.|
T Consensus 15 rILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VD------miLlGGDLFHeNkPSr~~L~~~i~l 79 (646)
T KOG2310|consen 15 RILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVD------MILLGGDLFHENKPSRKTLHRCLEL 79 (646)
T ss_pred EEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCc------EEEecCcccccCCccHHHHHHHHHH
Confidence 578999998 3 356777777766433332 4666789999887777766554444
No 183
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=27.52 E-value=72 Score=35.39 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCeEEEecccccc
Q 006410 530 RVSDFCKRNKLQLIIRAHECVM 551 (646)
Q Consensus 530 ~~~~fl~~n~l~~IiRgHe~v~ 551 (646)
.+.-.|+++++++.|-||+-..
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~l 260 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRNM 260 (394)
T ss_pred HHHHHHHHcCcCEEEEccccce
Confidence 6778999999999999998753
No 184
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=25.87 E-value=1.1e+02 Score=37.10 Aligned_cols=67 Identities=21% Similarity=0.113 Sum_probs=38.2
Q ss_pred CCeEEEccCCCCHHHH----------------HHHHHHhCCCCCCCCCceeeEEEeccccCCCCCh--------------
Q 006410 342 APVKVFGDLHGQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------- 391 (646)
Q Consensus 342 ~pi~VvGDIHG~~~dL----------------~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s-------------- 391 (646)
-.|+-..|+||++... ..+++...-.. ...-+|..||++..-+..
T Consensus 116 LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~ 190 (814)
T PRK11907 116 VRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQ 190 (814)
T ss_pred EEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCcc
Confidence 3477899999996432 22233321100 112466699999764432
Q ss_pred HHHHHHHHHHhhccCCCeEEecCCccc
Q 006410 392 LETITLLLALKIEYPENVHLIRGNHEA 418 (646)
Q Consensus 392 ~evl~lL~~Lk~~~P~~v~lLrGNHE~ 418 (646)
.-++.+|-.|. .=....||||.
T Consensus 191 ~P~i~amN~LG-----yDA~tLGNHEF 212 (814)
T PRK11907 191 HPMYAALEALG-----FDAGTLGNHEF 212 (814)
T ss_pred hHHHHHHhccC-----CCEEEechhhc
Confidence 12455555553 34677899996
No 185
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=25.85 E-value=93 Score=32.76 Aligned_cols=64 Identities=27% Similarity=0.289 Sum_probs=38.7
Q ss_pred CeEEEccCCCCHHHHHHHHHHhCCCCCCCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccC-CCeEEecCCcccch
Q 006410 343 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYP-ENVHLIRGNHEAAD 420 (646)
Q Consensus 343 pi~VvGDIHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P-~~v~lLrGNHE~~~ 420 (646)
.++.++|.|+...+.. ..|+.+ -++-+||+-.-|. +-||+.+=-.+ -..| .+=+.|+||||...
T Consensus 63 r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~-gslph~yKIVIaGNHELtF 127 (305)
T KOG3947|consen 63 RFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWL-GSLPHEYKIVIAGNHELTF 127 (305)
T ss_pred EEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHh-ccCcceeeEEEeeccceee
Confidence 4899999998766643 234332 4577999877664 33444332211 1122 23477999999854
No 186
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=25.10 E-value=2.3e+02 Score=27.22 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=41.9
Q ss_pred EEEccCCCCHHHHHHHHH-HhCC----CCC--CCCCceeeEEEeccccCCCCChHHHHHHHHHHhhccCCCeEE
Q 006410 345 KVFGDLHGQFGDLMRLFD-EYGF----PST--AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHL 411 (646)
Q Consensus 345 ~VvGDIHG~~~dL~~il~-~~g~----~~~--~~~~~~~~~vFLGDyVDRG~~s~evl~lL~~Lk~~~P~~v~l 411 (646)
+|+.=.+||-..+-+.+. .++- +.. ......-.+||||=.+|+|.-.-++..+|-.|+ +.+|++
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~---~KkV~l 72 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKKLK---GKKVAL 72 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHHcc---CCeEEE
Confidence 456667777777755443 3332 000 000223379999999999999999999998875 346655
No 187
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=24.66 E-value=5.1e+02 Score=23.32 Aligned_cols=75 Identities=8% Similarity=-0.037 Sum_probs=47.6
Q ss_pred EEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCcEEEccCCcCCCCCCCCCCCCCCccccccccceEEEEECCEEEEEc
Q 006410 26 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 105 (646)
Q Consensus 26 v~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~~~~IYVfG 105 (646)
+.++|-+|-..-. . ......+.+||.++.+|..+..+ ... .....+...+.++|+|-++.
T Consensus 2 icinGvly~~a~~-~----~~~~~~IvsFDv~~E~f~~i~~P--~~~-------------~~~~~~~~L~~~~G~L~~v~ 61 (129)
T PF08268_consen 2 ICINGVLYWLAWS-E----DSDNNVIVSFDVRSEKFRFIKLP--EDP-------------YSSDCSSTLIEYKGKLALVS 61 (129)
T ss_pred EEECcEEEeEEEE-C----CCCCcEEEEEEcCCceEEEEEee--eee-------------ccccCccEEEEeCCeEEEEE
Confidence 4678888766543 1 12245689999999999877622 000 12345577888899988865
Q ss_pred ccCCC-CCCCcEEEEe
Q 006410 106 GLKGD-ILLDDFLVAE 120 (646)
Q Consensus 106 G~~~~-~~l~dl~~~D 120 (646)
-.... ...-++|+++
T Consensus 62 ~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 62 YNDQGEPDSIDIWVLE 77 (129)
T ss_pred ecCCCCcceEEEEEee
Confidence 44432 2345888886
No 188
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=46 Score=34.96 Aligned_cols=70 Identities=27% Similarity=0.272 Sum_probs=42.0
Q ss_pred CeEEEcc--CCCCHHHHHHHHHHhCCCCCCCCCceeeEEEecccc-CCCC---------ChHHHHHHHHHHhhccCCCeE
Q 006410 343 PVKVFGD--LHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV-DRGQ---------HSLETITLLLALKIEYPENVH 410 (646)
Q Consensus 343 pi~VvGD--IHG~~~dL~~il~~~g~~~~~~~~~~~~~vFLGDyV-DRG~---------~s~evl~lL~~Lk~~~P~~v~ 410 (646)
.+.|||| .+|.|..-.-.+.....- +.-++. -+|-+||-+ |-|. .+.|-+.---+|. ...+
T Consensus 45 sflvvGDwGr~g~~nqs~va~qmg~ig-e~l~id--fvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ----kpWy 117 (336)
T KOG2679|consen 45 SFLVVGDWGRRGSFNQSQVALQMGEIG-EKLDID--FVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ----KPWY 117 (336)
T ss_pred EEEEEcccccCCchhHHHHHHHHHhHH-Hhccce--EEEecCCcccccCCCCCCChhHHhhhhhcccCcccc----cchh
Confidence 4889999 689887766555543221 111121 345599976 4454 3444444444443 3678
Q ss_pred EecCCcccc
Q 006410 411 LIRGNHEAA 419 (646)
Q Consensus 411 lLrGNHE~~ 419 (646)
.|.||||.+
T Consensus 118 ~vlGNHDyr 126 (336)
T KOG2679|consen 118 SVLGNHDYR 126 (336)
T ss_pred hhccCcccc
Confidence 899999974
No 189
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=21.50 E-value=71 Score=33.47 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=25.9
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHHhhccCCCeEEecCCcccc
Q 006410 377 DYLFLGDYVDRGQHSLETI-TLLLALKIEYPENVHLIRGNHEAA 419 (646)
Q Consensus 377 ~~vFLGDyVDRG~~s~evl-~lL~~Lk~~~P~~v~lLrGNHE~~ 419 (646)
+++|+||+|. ..+.+.| .+|-.||.+++-.+.+ .|=|..
T Consensus 2 ~ilfiGDi~G--~~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYG--KAGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCC--HHHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 7999999994 4444443 5677788887655444 455654
No 190
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.48 E-value=1.5e+02 Score=20.92 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=16.3
Q ss_pred eEEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCC
Q 006410 23 HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAA 58 (646)
Q Consensus 23 Hsav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t 58 (646)
.+.++.++++|+.+. ...++++|++|
T Consensus 15 ~~~~v~~g~vyv~~~----------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG----------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T----------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC----------CCEEEEEeCCC
Confidence 455777899888654 23399999865
No 191
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=20.91 E-value=8.2e+02 Score=26.49 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=41.0
Q ss_pred EEEEECCEEEEEcCCCCCCCccCCCCeEEEEECCCCc--EEEccCCcCCCCCCCCCCCCCCccccccccceEEEEECCEE
Q 006410 24 AAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRI 101 (646)
Q Consensus 24 sav~v~~~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~--W~~~~~~~~~~~p~~r~~~~~~~~~~~~R~~Haa~~~~~~I 101 (646)
+.++.++++|+.+.. ..+++||.++++ |..-..-..+..+.. ...+..-+.++.++++
T Consensus 64 sPvv~~~~vy~~~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~v 123 (394)
T PRK11138 64 HPAVAYNKVYAADRA----------GLVKALDADTGKEIWSVDLSEKDGWFSKN----------KSALLSGGVTVAGGKV 123 (394)
T ss_pred ccEEECCEEEEECCC----------CeEEEEECCCCcEeeEEcCCCcccccccc----------cccccccccEEECCEE
Confidence 457789999997542 238899988765 875321100000000 0012223456778899
Q ss_pred EEEcccCCCCCCCcEEEEeCCC
Q 006410 102 YIYGGLKGDILLDDFLVAENSP 123 (646)
Q Consensus 102 YVfGG~~~~~~l~dl~~~D~~~ 123 (646)
|+. +.+ ..++++|..+
T Consensus 124 ~v~-~~~-----g~l~ald~~t 139 (394)
T PRK11138 124 YIG-SEK-----GQVYALNAED 139 (394)
T ss_pred EEE-cCC-----CEEEEEECCC
Confidence 874 322 2578888654
No 192
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=20.00 E-value=4.6e+02 Score=28.02 Aligned_cols=76 Identities=12% Similarity=0.231 Sum_probs=41.3
Q ss_pred CCCCCccceEEEE---ECC---EEEEEcCCCCCCCccCCCCeEEEEECCCCc--------EEEccCCcCCCCCCCCCCCC
Q 006410 15 VAPSPRYQHAAVF---VGA---RLHVTGGALRGGRAIEGEAAVAVLDTAAGV--------WLDRNGLVTSSRTSKGHGEH 80 (646)
Q Consensus 15 ~~P~pR~~Hsav~---v~~---~LyV~GG~~~~~~~~~d~~~v~~yD~~t~~--------W~~~~~~~~~~~p~~r~~~~ 80 (646)
.+|.-|+-..+.+ .++ .-+|.||++-.... .+++|+....+.. +.+.. ..|..|
T Consensus 18 YLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNEl---S~~LY~ls~~s~~cNkK~tl~C~EKe--LvGdvP------- 85 (337)
T PF03089_consen 18 YLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNEL---SSSLYILSVDSRGCNKKVTLCCQEKE--LVGDVP------- 85 (337)
T ss_pred cCCCCCCccEeeecCCCCCCeeeEEecCCcCCCccc---ccceEEEEeecCCCCceeEEEEecce--ecCCCC-------
Confidence 3565665544444 122 34667888654332 3457776554332 12211 223333
Q ss_pred CCccccccccceEEEEEC----CEEEEEcccC
Q 006410 81 DPSLELMRRCRHASASIG----VRIYIYGGLK 108 (646)
Q Consensus 81 ~~~~~~~~R~~Haa~~~~----~~IYVfGG~~ 108 (646)
.+|++|++-++. ....+|||..
T Consensus 86 ------~aRYGHt~~vV~SrGKta~VlFGGRS 111 (337)
T PF03089_consen 86 ------EARYGHTINVVHSRGKTACVLFGGRS 111 (337)
T ss_pred ------cccccceEEEEEECCcEEEEEECCcc
Confidence 378889998773 3478899964
Done!