BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006411
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 275 bits (704), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 193/340 (56%), Gaps = 95/340 (27%)
Query: 374 MLCGPDGELP--------EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVME 425
M C P G P E+L+NLEP++IE + NEIMD P V W+DIAG+E AK + E
Sbjct: 39 MQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKE 98
Query: 426 MVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------------------I 454
+V+WP+LRPDIF G R P KG+LLFGPP +
Sbjct: 99 IVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158
Query: 455 GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE 514
GEGEK+VRALF VA C+QPAVIF+DEIDSLLSQ + DGE
Sbjct: 159 GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ----------------------RGDGE 196
Query: 515 HESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQELDEAARRRLTKRLYIPLP----- 568
HESSRR+KT+FL++++G + SE +IL+VGATNRPQE+DEAARRRL KRLYIPLP
Sbjct: 197 HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR 256
Query: 569 --------------------------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRL 602
S +SG+DM L +EAS+GP+R Q +I +
Sbjct: 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL--QTADIATI 314
Query: 603 QKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
+ ++P+ DFENA VR SVS +L +YE WNK FG
Sbjct: 315 TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 174/324 (53%), Gaps = 87/324 (26%)
Query: 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK 445
RN++ L + NEI+D V++DDIAG + AK+ + E+VI P LRP++F G R+P +
Sbjct: 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR 149
Query: 446 GLLLFGPP-------------------------------IGEGEKLVRALFGVASCRQPA 474
GLLLFGPP +GEGEKLVRALF VA QP+
Sbjct: 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPS 209
Query: 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534
+IF+D++DSLL C +R +GEH++SRRLKT+FLIE +G S
Sbjct: 210 IIFIDQVDSLL---------------CERR-------EGEHDASRRLKTEFLIEFDGVQS 247
Query: 535 -GSEQILLVGATNRPQELDEAARRRLTKRLYIPLP------------------------- 568
G +++L++GATNRPQELDEA RR KR+Y+ LP
Sbjct: 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 307
Query: 569 ------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
+ GYSGSD+ L K+A++GP+RE + ++ + +M+ + L DF +L ++
Sbjct: 308 AQLARMTDGYSGSDLTALAKDAALGPIRELKPE--QVKNMSASEMRNIRLSDFTESLKKI 365
Query: 623 RASVSLNELGIYEEWNKQFGSLSL 646
+ SVS L Y WNK FG ++
Sbjct: 366 KRSVSPQTLEAYIRWNKDFGDTTV 389
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 88/319 (27%)
Query: 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFG 451
+L++ + +EI++ V W DIAG + AK+ + EMVI P +RP++F G R+P KGLLLFG
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 452 PP-------------------------------IGEGEKLVRALFGVASCRQPAVIFVDE 480
PP +G+GEKLVRALF VA QP++IF+DE
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 481 IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF--DSGSEQ 538
+DSLLS+ +S EHE+SRRLKT+FL+E +G + ++
Sbjct: 122 VDSLLSE----------------------RSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159
Query: 539 ILLVGATNRPQELDEAARRRLTKRLYIPLP------------------------------ 568
I+++ ATNRPQELDEAA RR TKR+Y+ LP
Sbjct: 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219
Query: 569 -SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVS 627
+ GYSGSD+ L K+A++ P+RE + ++ L M+ +T QDF ++L ++R SV+
Sbjct: 220 ITDGYSGSDLTALAKDAALEPIRELNVEQVKC--LDISAMRAITEQDFHSSLKRIRRSVA 277
Query: 628 LNELGIYEEWNKQFGSLSL 646
L YE+W++ +G +++
Sbjct: 278 PQSLNSYEKWSQDYGDITI 296
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 162/357 (45%), Gaps = 126/357 (35%)
Query: 380 GELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKG 439
GE +KLR +S+ I+ P+V+W+D+AGLE AK+ + E VI P+ P +FKG
Sbjct: 27 GEDNKKLRG-------ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG 79
Query: 440 CRSPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVA 468
R P G+LL+GPP +GE EKLV+ LF +A
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 139
Query: 469 SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528
+P++IF+D++D+L + +GE E+SRR+KT+ L++
Sbjct: 140 RENKPSIIFIDQVDALTGT----------------------RGEGESEASRRIKTELLVQ 177
Query: 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP-------------------- 568
M G + S+ +L++GATN P +LD A RRR +R+YIPLP
Sbjct: 178 MNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL 237
Query: 569 -----------SSGYSGSDMKNLVKEASMGPLR--------------------------- 590
+ GYSGSD+ +VK+A M P+R
Sbjct: 238 TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPG 297
Query: 591 -----EALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
E IE L++ D+ T++DF A+ R +V+ ++L E++ + FG
Sbjct: 298 DDGAIEMSWTDIEADELKEPDL---TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 162/357 (45%), Gaps = 126/357 (35%)
Query: 380 GELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKG 439
GE +KLR +S+ I+ P+V+W+D+AGLE AK+ + E VI P+ P +FKG
Sbjct: 12 GEDNKKLRG-------ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG 64
Query: 440 CRSPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVA 468
R P G+LL+GPP +GE EKLV+ LF +A
Sbjct: 65 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 124
Query: 469 SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528
+P++IF+D++D+L + +GE E+SRR+KT+ L++
Sbjct: 125 RENKPSIIFIDQVDALTGT----------------------RGEGESEASRRIKTELLVQ 162
Query: 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP-------------------- 568
M G + S+ +L++GATN P +LD A RRR +R+YIPLP
Sbjct: 163 MNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL 222
Query: 569 -----------SSGYSGSDMKNLVKEASMGPLR--------------------------- 590
+ GYSGSD+ +VK+A M P+R
Sbjct: 223 TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPG 282
Query: 591 -----EALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
E IE L++ D+ T++DF A+ R +V+ ++L E++ + FG
Sbjct: 283 DDGAIEMSWTDIEADELKEPDL---TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 336
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 153/336 (45%), Gaps = 119/336 (35%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------- 453
I+ P+V+W+D+AGLE AK+ + E VI P+ P +FKG R P G+LL+GPP
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 454 ------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQML 489
+GE EKLV+ LF +A +P++IF+D++D+L
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT-- 125
Query: 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549
+ +GE E+SRR+KT+ L++M G + S+ +L++GATN P
Sbjct: 126 --------------------RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 165
Query: 550 ELDEAARRRLTKRLYIPLP-------------------------------SSGYSGSDMK 578
+LD A RRR +R+YIPLP + GYSGSD+
Sbjct: 166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA 225
Query: 579 NLVKEASMGPLR--------------------------------EALRQGIEITRLQKED 606
+VK+A M P+R E IE L++ D
Sbjct: 226 VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPD 285
Query: 607 MQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
+ T++DF A+ R +V+ ++L E++ + FG
Sbjct: 286 L---TIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 318
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 151/331 (45%), Gaps = 119/331 (35%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------ 453
P+V+W+D+AGLE AK+ + E VI P+ P +FKG R P G+LL+GPP
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
+GE EKLV+ LF +A +P++IF+DE+D+L
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGT------- 134
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
+ +GE E+SRR+KT+ L++M G + S+ +L++GATN P +LD A
Sbjct: 135 ---------------RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 179
Query: 555 ARRRLTKRLYIPLP-------------------------------SSGYSGSDMKNLVKE 583
RRR +R+YIPLP + GYSGSD+ +VK+
Sbjct: 180 IRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKD 239
Query: 584 ASMGPLR--------------------------------EALRQGIEITRLQKEDMQPVT 611
A M P+R E IE L++ D+ T
Sbjct: 240 ALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDL---T 296
Query: 612 LQDFENALPQVRASVSLNELGIYEEWNKQFG 642
++DF A+ R +V+ ++L E++ + FG
Sbjct: 297 IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 327
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 130/263 (49%), Gaps = 85/263 (32%)
Query: 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFG 451
+L + I+ P+V+W D+AGLE AK+ + E VI P+ P +F G R+P +G+LLFG
Sbjct: 115 KLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFG 174
Query: 452 PP--------------------------------IGEGEKLVRALFGVASCRQPAVIFVD 479
PP +GE EKLV+ LF +A +P++IF+D
Sbjct: 175 PPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID 234
Query: 480 EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539
EIDSL C R S+ E E++RR+KT+FL++M+G ++ I
Sbjct: 235 EIDSL----------------CGSR------SENESEAARRIKTEFLVQMQGVGVDNDGI 272
Query: 540 LLVGATNRPQELDEAARRRLTKRLYIPLP------------------------------- 568
L++GATN P LD A RRR KR+YIPLP
Sbjct: 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRK 332
Query: 569 SSGYSGSDMKNLVKEASMGPLRE 591
+ GYSG+D+ +V++A M P+R+
Sbjct: 333 TDGYSGADISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 125/250 (50%), Gaps = 85/250 (34%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------ 453
P+V+W D+AGLE AK+ + E VI P+ P +F G R+P +G+LLFGPP
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
+GE EKLV+ LF +A +P++IF+DEIDSL
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSL--------- 117
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
C R S+ E E++RR+KT+FL++M+G ++ IL++GATN P LD
Sbjct: 118 -------CGSR------SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164
Query: 554 AARRRLTKRLYIPLP-------------------------------SSGYSGSDMKNLVK 582
A RRR KR+YIPLP + GYSG+D+ +V+
Sbjct: 165 AIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVR 224
Query: 583 EASMGPLREA 592
+A M P+R+
Sbjct: 225 DALMQPVRKV 234
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 122/285 (42%), Gaps = 98/285 (34%)
Query: 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF-KGCRSPGKGLLLFGPP------- 453
+D P+VR++DI GLE + + E+V PL P++F K P KG+LL+GPP
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 454 ------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQML 489
IGEG LV+ +F +A + P++IF+DEID++ ++
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549
+ + G+ E R L Q L EM+GFD+ + + ++GATNRP
Sbjct: 128 DAL------------------TGGDREVQRTL-MQLLAEMDGFDARGD-VKIIGATNRPD 167
Query: 550 ELDEAARR--RLTKRLYIPLP------------------------------SSGYSGSDM 577
LD A R R + + +P P + G G+++
Sbjct: 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAEL 227
Query: 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
K + EA M +RE LR VT+ DF A+ ++
Sbjct: 228 KAICTEAGMNAIRE-LRDY-------------VTMDDFRKAVEKI 258
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 123/295 (41%), Gaps = 103/295 (34%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---------- 453
P+V W DI LE ++ + ++ P+ PD FK G +P G+LL GPP
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKA 63
Query: 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYM 492
+GE E+ VR +F A P VIF DE+D+L
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP------ 117
Query: 493 HVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELD 552
R+SD E +S R+ Q L EM+G ++ +Q+ ++ ATNRP +D
Sbjct: 118 ----------------RRSDRETGASVRVVNQLLTEMDGLEA-RQQVFIMAATNRPDIID 160
Query: 553 EAARR--RLTKRLYIPLPSSG-----------------------------------YSGS 575
A R RL K L++ LP Y+G+
Sbjct: 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGA 220
Query: 576 DMKNLVKEASMGPLREAL---RQGIEITRLQKEDMQPVTLQDFENALPQVRASVS 627
D+ LV+EAS+ LR+ + + G E L+ V+ + FE A +VR+S+S
Sbjct: 221 DLSALVREASICALRQEMARQKSGNEKGELK------VSHKHFEEAFKKVRSSIS 269
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 124/320 (38%), Gaps = 101/320 (31%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF-KGCRSPGKGLLLFGPP----------- 453
P V W+DI GLE K+ + E+V +P+ PD F K +P KG+L +GPP
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
GE E VR +F A P V+F DE+DS+
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR----- 586
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
++ R+ Q L EM+G S + + ++GATNRP +D
Sbjct: 587 --------------GGNIGDGGGAADRVINQILTEMDGM-STKKNVFIIGATNRPDIIDP 631
Query: 554 AARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNLV 581
A R RL + +YIPLP ++G+SG+D+ +
Sbjct: 632 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Query: 582 KEAS----------MGPLREALRQGIEITRLQKEDMQPVTLQD-FENALPQVRASVSLNE 630
+ A + ++++D P +D FE A+ R SVS N+
Sbjct: 692 QRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND 751
Query: 631 LGIYE------EWNKQFGSL 644
+ YE + ++ FGS
Sbjct: 752 IRKYEMFAQTLQQSRGFGSF 771
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 122/310 (39%), Gaps = 104/310 (33%)
Query: 389 LEPRLIEHVSNEIMDRDPH------VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-R 441
+ P + H E + R+ V +DD+ G + EMV PL P +FK
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 442 SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVASC 470
P +G+LL+GPP GE E +R F A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530
PA+IF+DE+D++ + + K+ GE E RR+ +Q L M+
Sbjct: 296 NAPAIIFIDELDAIAPK--------------------REKTHGEVE--RRIVSQLLTLMD 333
Query: 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------ 570
G + ++++ ATNRP +D A RR R + + I +P +
Sbjct: 334 GLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD 392
Query: 571 ------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQ-------PVT 611
G+ G+D+ L EA++ +A+R+ +++ L+ E + VT
Sbjct: 393 DVDLEQVANETHGHVGADLAALCSEAAL----QAIRKKMDLIDLEDETIDAEVMNSLAVT 448
Query: 612 LQDFENALPQ 621
+ DF AL Q
Sbjct: 449 MDDFRWALSQ 458
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 56/203 (27%)
Query: 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------ 453
+D P + D+ GL+ + ++E ++ P+ R D FK G R+P KG L++GPP
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTL 230
Query: 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488
IGEG KLVR F +A + P +IF+DE+D++
Sbjct: 231 LARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAI---- 286
Query: 489 LPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548
KRF ++ D E +R + L +++GF S +++ ++ ATNR
Sbjct: 287 ------------GTKRFDSEKSGDRE---VQRTMLELLNQLDGF-SSDDRVKVLAATNRV 330
Query: 549 QELDEAARR--RLTKRLYIPLPS 569
LD A R RL +++ PLPS
Sbjct: 331 DVLDPALLRSGRLDRKIEFPLPS 353
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 124/320 (38%), Gaps = 101/320 (31%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF-KGCRSPGKGLLLFGPP----------- 453
P V W+DI GLE K+ + E+V +P+ PD F K +P KG+L +GPP
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
GE E VR +F A P V+F DE+DS+
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR----- 586
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
++ R+ Q L EM+G S + + ++GATNRP +D
Sbjct: 587 --------------GGNIGDGGGAADRVINQILTEMDGM-STKKNVFIIGATNRPDIIDP 631
Query: 554 AARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNLV 581
A R RL + +YIPLP ++G+SG+D+ +
Sbjct: 632 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691
Query: 582 KEAS----------MGPLREALRQGIEITRLQKEDMQPVTLQD-FENALPQVRASVSLNE 630
+ A + ++++D P +D FE A+ R SVS N+
Sbjct: 692 QRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND 751
Query: 631 LGIYE------EWNKQFGSL 644
+ YE + ++ FGS
Sbjct: 752 IRKYEMFAQTLQQSRGFGSF 771
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 122/310 (39%), Gaps = 104/310 (33%)
Query: 389 LEPRLIEHVSNEIMDRDPH------VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-R 441
+ P + H E + R+ V +DDI G + EMV PL P +FK
Sbjct: 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV 235
Query: 442 SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVASC 470
P +G+LL+GPP GE E +R F A
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530
PA+IF+DE+D++ + + K+ GE E RR+ +Q L M+
Sbjct: 296 NAPAIIFIDELDAIAPK--------------------REKTHGEVE--RRIVSQLLTLMD 333
Query: 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------ 570
G + ++++ ATNRP +D A RR R + + I +P +
Sbjct: 334 GLKQRA-HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD 392
Query: 571 ------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQ-------PVT 611
G+ G+D+ L EA++ +A+R+ +++ L+ E + VT
Sbjct: 393 DVDLEQVANETHGHVGADLAALCSEAAL----QAIRKKMDLIDLEDETIDAEVMNSLAVT 448
Query: 612 LQDFENALPQ 621
+ DF AL Q
Sbjct: 449 MDDFRWALSQ 458
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 84/197 (42%), Gaps = 54/197 (27%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF-KGCRSPGKGLLLFGPP----------- 453
P V W+DI GLE K+ + E+V +P+ PD F K +P KG+L +GPP
Sbjct: 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
GE E VR +F A P V+F DE+DS+
Sbjct: 70 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR----- 124
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
++ R+ Q L EM+G S + + ++GATNRP +D
Sbjct: 125 --------------GGNIGDGGGAADRVINQILTEMDGM-STKKNVFIIGATNRPDIIDP 169
Query: 554 AARR--RLTKRLYIPLP 568
A R RL + +YIPLP
Sbjct: 170 AILRPGRLDQLIYIPLP 186
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 54/195 (27%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP----------- 453
P V + D+ GL+ K+ + E V PL++ D+++ P +G+LL+GPP
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
+GEG ++VR +F +A P++IF+DE+DS+
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSI--------- 277
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
KRF Q SD E + R+ + L +M+GFD S + ++ ATNR LD
Sbjct: 278 -------ATKRFDAQTGSDREVQ---RILIELLTQMDGFDQ-STNVKVIMATNRADTLDP 326
Query: 554 AARR--RLTKRLYIP 566
A R RL +++ P
Sbjct: 327 ALLRPGRLDRKIEFP 341
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 88/251 (35%)
Query: 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----------- 453
+ +D I GL + + E++ PL P+IF+ G + P KG+LL+GPP
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPP-KGVLLYGPPGTGKTLLAKAV 235
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
IGE +++R +F A +P +IF+DE+D++ +
Sbjct: 236 AATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGR------ 289
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELD 552
F + + E R L + L +M+GFD+ G +I++ ATNRP LD
Sbjct: 290 ------------RFSEGTSADREIQRTL-MELLTQMDGFDNLGQTKIIM--ATNRPDTLD 334
Query: 553 EAARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNL 580
A R RL +++ IPLP S G++G+D++N
Sbjct: 335 PALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNC 394
Query: 581 VKEASMGPLRE 591
EA +R+
Sbjct: 395 ATEAGFFAIRD 405
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 98/286 (34%)
Query: 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP------------ 453
V +DDI G + EMV PL P +FK P +G+LL+GPP
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
GE E +R F A PA+IF+DE+D++ +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK------- 312
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
+ K+ GE E RR+ +Q L M+G + ++++ ATNRP +D A
Sbjct: 313 -------------REKTHGEVE--RRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPA 356
Query: 555 ARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVK 582
RR R + + I +P + G+ G+D+ L
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
Query: 583 EASMGPLREALRQGIEITRLQKEDMQ-------PVTLQDFENALPQ 621
EA++ +A+R+ +++ L+ E + VT+ DF AL Q
Sbjct: 417 EAAL----QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 98/286 (34%)
Query: 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP------------ 453
V +DDI G + EMV PL P +FK P +G+LL+GPP
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
GE E +R F A PA+IF+DE+D++ +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK------- 312
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
+ K+ GE E RR+ +Q L M+G + ++++ ATNRP +D A
Sbjct: 313 -------------REKTHGEVE--RRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPA 356
Query: 555 ARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVK 582
RR R + + I +P + G+ G+D+ L
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
Query: 583 EASMGPLREALRQGIEITRLQKEDMQ-------PVTLQDFENALPQ 621
EA++ +A+R+ +++ L+ E + VT+ DF AL Q
Sbjct: 417 EAAL----QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 98/286 (34%)
Query: 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP------------ 453
V +DDI G + EMV PL P +FK P +G+LL+GPP
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
GE E +R F A PA+IF+DE+D++ +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK------- 312
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
+ K+ GE E RR+ +Q L M+G + ++++ ATNRP +D A
Sbjct: 313 -------------REKTHGEVE--RRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPA 356
Query: 555 ARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVK 582
RR R + + I +P + G+ G+D+ L
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
Query: 583 EASMGPLREALRQGIEITRLQKEDMQ-------PVTLQDFENALPQ 621
EA++ +A+R+ +++ L+ E + VT+ DF AL Q
Sbjct: 417 EAAL----QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 114/286 (39%), Gaps = 98/286 (34%)
Query: 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP------------ 453
V +DD+ G + EMV PL P +FK P +G+LL+GPP
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
GE E +R F A PA+IF+DE+D++ +
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK------- 312
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
+ K+ GE E RR+ +Q L M+G + ++++ ATNRP +D A
Sbjct: 313 -------------REKTHGEVE--RRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSIDPA 356
Query: 555 ARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVK 582
RR R + + I +P + G+ G+D+ L
Sbjct: 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416
Query: 583 EASMGPLREALRQGIEITRLQKEDMQ-------PVTLQDFENALPQ 621
EA++ +A+R+ +++ L+ E + VT+ DF AL Q
Sbjct: 417 EAAL----QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 111/282 (39%), Gaps = 101/282 (35%)
Query: 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------------ 453
V + D+ G E A + + E+V + L P F G R P KG+LL GPP
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATLLARAVA 70
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
+G G VR LF A P ++F+DEID++ +
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-- 128
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
G H+ + Q L+EM+GFDS E I+++ ATNRP LD A
Sbjct: 129 -----------------GGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDILDPA 170
Query: 555 ARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNLVK 582
R R K++ + P + G+ G+D++NLV
Sbjct: 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230
Query: 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
EA++ RE + +T++DFE A+ +V A
Sbjct: 231 EAALLAAREGRDK--------------ITMKDFEEAIDRVIA 258
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 111/282 (39%), Gaps = 101/282 (35%)
Query: 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------------ 453
V + D+ G E A + + E+V + L P F G R P KG+LL GPP
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVA 70
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
+G G VR LF A P ++F+DEID++ +
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL-- 128
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
G H+ + Q L+EM+GFDS E I+++ ATNRP LD A
Sbjct: 129 -----------------GGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDILDPA 170
Query: 555 ARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNLVK 582
R R K++ + P + G+ G+D++NLV
Sbjct: 171 LLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVN 230
Query: 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
EA++ RE + +T++DFE A+ +V A
Sbjct: 231 EAALLAAREGRDK--------------ITMKDFEEAIDRVIA 258
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 100/291 (34%)
Query: 397 VSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP- 453
VS ++++ P +D + GL K + E++ P+ P++F+ G P KG++L+GPP
Sbjct: 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPG 192
Query: 454 ------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDS 483
IGEG ++VR LF +A P++IF+DEIDS
Sbjct: 193 TGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252
Query: 484 LLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVG 543
+ S + S G +R + L +++GF++ S+ I ++
Sbjct: 253 IGSTRV-------------------EGSGGGDSEVQRTMLELLNQLDGFET-SKNIKIIM 292
Query: 544 ATNRPQELDEAARR--RLTKRLYIPLPS------------------------------SG 571
ATNR LD A R R+ +++ P PS +G
Sbjct: 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNG 352
Query: 572 YSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
SG+D+K + EA M LRE R+ VT +DFE A+ +V
Sbjct: 353 CSGADVKGVCTEAGMYALRE--------RRIH------VTQEDFELAVGKV 389
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 59/222 (26%)
Query: 381 ELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC 440
ELP L PR+ V+ ++ P V + D+ G + + + E+V PLL P+ F
Sbjct: 184 ELP-----LPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATL 238
Query: 441 R-SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVA 468
P KG+LL+GPP +GEG ++VR LF +A
Sbjct: 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA 298
Query: 469 SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528
++ +IF DEID++ F + G++E R + + + +
Sbjct: 299 RTKKACIIFFDEIDAVGGA------------------RFDDGAGGDNEVQRTM-LELITQ 339
Query: 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLP 568
++GFD I ++ ATNRP LD A R R+ +++ LP
Sbjct: 340 LDGFDPRG-NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 87/242 (35%)
Query: 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP-------------- 453
+ D+AG + AK+ V E+V + L P F+ G + P KG+L+ GPP
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAGE 68
Query: 454 -----------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHH 496
+G G VR +F A P +IF+DEID++ Q +
Sbjct: 69 AKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG--- 125
Query: 497 IKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAAR 556
G H+ + Q L+EM+GF+ G+E I+++ ATNRP LD A
Sbjct: 126 ----------------GGHDEREQTLNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALL 168
Query: 557 R--RLTKRLYIPLP------------------------------SSGYSGSDMKNLVKEA 584
R R +++ + LP + G+SG+D+ NLV EA
Sbjct: 169 RPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEA 228
Query: 585 SM 586
++
Sbjct: 229 AL 230
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 104/246 (42%), Gaps = 85/246 (34%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---------- 453
P+VR+ D+AG E AK+ V+E+V + L P+ + G + P KG+LL GPP
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKA 63
Query: 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYM 492
+G G VR LF A + P++IF+DEID++
Sbjct: 64 VAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG 123
Query: 493 HVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELD 552
V G E + L Q L EM+GF S + ++++ ATNRP+ LD
Sbjct: 124 VVS-----------------GNDEREQTL-NQLLAEMDGFGSENAPVIVLAATNRPEILD 165
Query: 553 EAARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNL 580
A R R +++ + P ++G +G+D+ N+
Sbjct: 166 PALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANI 225
Query: 581 VKEASM 586
+ EA++
Sbjct: 226 INEAAL 231
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 122/299 (40%), Gaps = 101/299 (33%)
Query: 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------ 453
MD+ P + DI GLE + + E V PL P++++ G + P KG++L+G P
Sbjct: 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPP-KGVILYGAPGTGKTL 231
Query: 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488
+G+G +L R +F VA P+++F+DEID++ ++
Sbjct: 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTK- 290
Query: 489 LPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548
+ S GE E R + + L +++GFD + + ++ ATN+
Sbjct: 291 -----------------RYDSNSGGEREIQRTM-LELLNQLDGFDDRGD-VKVIMATNKI 331
Query: 549 QELDEAARR--RLTKRLYIPLPS------------------------------SGYSGSD 576
+ LD A R R+ +++ P SG+D
Sbjct: 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGAD 391
Query: 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV-RASVSLNELGIY 634
++ + EA + LRE R+Q VT +DF+ A +V + V N G+Y
Sbjct: 392 IQAMCTEAGLLALRE--------RRMQ------VTAEDFKQAKERVMKNKVEENLEGLY 436
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 100/251 (39%), Gaps = 88/251 (35%)
Query: 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPI----------- 454
V + D+AG+ AK V E V + L P+ F G + P KG LL GPP
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVA 60
Query: 455 --------------------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
G G VR+LF A R P ++++DEID++ + M
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA 554
S+ E E + Q L+EM+G + ++ ++++ +TNR LD A
Sbjct: 121 F---------------SNTEEEQTL---NQLLVEMDGMGT-TDHVIVLASTNRADILDGA 161
Query: 555 ARR--RLTKRLYIPLP--------------------------------SSGYSGSDMKNL 580
R RL + ++I LP + G+SG+D+ N+
Sbjct: 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221
Query: 581 VKEASMGPLRE 591
EA++ RE
Sbjct: 222 CNEAALHAARE 232
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 57/203 (28%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A P ++F+DEID+
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA---- 143
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547
+ R G E + L Q L+EM+GF+ + I+++ ATNR
Sbjct: 144 --------------VGRKRGSGVGGGNDEREQTL-NQLLVEMDGFEKDT-AIVVMAATNR 187
Query: 548 PQELDEAARR--RLTKRLYIPLP 568
P LD A R R +++ I P
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAP 210
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 86/203 (42%), Gaps = 57/203 (28%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 78
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A P ++F+DEID++
Sbjct: 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV--- 135
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547
KR + E E + Q L+EM+GF+ + I+++ ATNR
Sbjct: 136 -------------GRKRGSGVGGGNDEREQT---LNQLLVEMDGFEKDT-AIVVMAATNR 178
Query: 548 PQELDEAARR--RLTKRLYIPLP 568
P LD A R R +++ I P
Sbjct: 179 PDILDPALLRPGRFDRQIAIDAP 201
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 57/203 (28%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 63
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A P ++F+DEID+
Sbjct: 64 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA---- 119
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547
+ R G E + L Q L+EM+GF+ + I+++ ATNR
Sbjct: 120 --------------VGRKRGSGVGGGNDEREQTL-NQLLVEMDGFEKDT-AIVVMAATNR 163
Query: 548 PQELDEAARR--RLTKRLYIPLP 568
P LD A R R +++ I P
Sbjct: 164 PDILDPALLRPGRFDRQIAIDAP 186
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 86/203 (42%), Gaps = 57/203 (28%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A P ++F+DEID++
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV--- 144
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547
KR + E E + Q L+EM+GF+ + I+++ ATNR
Sbjct: 145 -------------GRKRGSGVGGGNDEREQT---LNQLLVEMDGFEKDT-AIVVMAATNR 187
Query: 548 PQELDEAARR--RLTKRLYIPLP 568
P LD A R R +++ I P
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAP 210
>pdb|1WSB|A Chain A, Flavodoxin Mutant- S64c
pdb|1WSW|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Dimer, Semiquinone State
pdb|1XYV|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Monomer, Semiquinone State
pdb|1XYY|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin
Mutant S64c, Homodimer, Oxidised State
Length = 148
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 91 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 142
>pdb|1AKW|A Chain A, G61l Oxidized Flavodoxin Mutant
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1AKT|A Chain A, G61n Oxidized Flavodoxin Mutant
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1AKR|A Chain A, G61a Oxidized Flavodoxin Mutant
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1J9G|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris S64c Mutant, Monomer Oxidised, At 2.4 Angstrom
Resolution
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1J9E|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris S35c Mutant At 1.44 Angstrom Resolution
pdb|1XT6|A Chain A, S35c Flavodoxin Mutant In The Semiquinone State
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1J8Q|A Chain A, Low Temperature (100k) Crystal Structure Of Flavodoxin D.
Vulgaris Wild-Type At 1.35 Angstrom Resolution
pdb|2FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|3FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|4FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
pdb|5FX2|A Chain A, Comparison Of The Crystal Structures Of A Flavodoxin In
Its Three Oxidation States At Cryogenic Temperatures
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1FX1|A Chain A, A Crystallographic Structural Study Of The Oxidation
States Of Desulfovibrio Vulgaris Flavodoxin
Length = 148
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 91 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 142
>pdb|1AZL|A Chain A, G61v Flavodoxin Mutant From Desulfovibrio Vulgaris
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1BU5|A Chain A, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris
(Hildenborough) Apoflavodoxin-Riboflavin Complex
pdb|1BU5|B Chain B, X-Ray Crystal Structure Of The Desulfovibrio Vulgaris
(Hildenborough) Apoflavodoxin-Riboflavin Complex
Length = 147
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1F4P|A Chain A, Y98w Flavodoxin Mutant 1.5a (D. Vulgaris)
Length = 147
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1AKQ|A Chain A, D95a Oxidized Flavodoxin Mutant From D. Vulgaris
pdb|1AKU|A Chain A, D95a Hydroquinone Flavodoxin Mutant From D. Vulgaris
pdb|1AKV|A Chain A, D95a Semiquinone Flavodoxin Mutant From D. Vulgaris
Length = 147
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 371 SLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 96 SYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1C7E|A Chain A, D95e Hydroquinone Flavodoxin Mutant From D. Vulgaris
pdb|1C7E|B Chain B, D95e Hydroquinone Flavodoxin Mutant From D. Vulgaris
pdb|1C7F|A Chain A, D95e Oxidized Flavodoxin Mutant From D. Vulgaris
pdb|1C7F|B Chain B, D95e Oxidized Flavodoxin Mutant From D. Vulgaris
Length = 147
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 371 SLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 96 SYEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1I1O|A Chain A, Room Temperature Crystal Structure Flavodoxin D. Vulgaris
Mutant Y98h At 2.0 Ang. Resolution
Length = 147
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEH 418
F + S E CG + EKL+NL +++ +D DP DDI G H
Sbjct: 90 FGCGDSSHEYFCGAVDAIEEKLKNLGAEIVQ--DGLRIDGDPRAARDDIVGWAH 141
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 430 PLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQML 489
P ++ I + SPG G L G LF R+PA +F+DEI +
Sbjct: 62 PNVQVAIIEQSVSPGGGAWLGG-----------QLFSAMIVRKPAHLFLDEIGVAYDEQD 110
Query: 490 PYMHVHHIKLFC 501
Y+ V H LF
Sbjct: 111 TYVVVKHAALFT 122
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 559 LTKRLYIPLP--SSGYSGSDMKNLVKEASMGPLRE 591
LTK Y L + GYSGSD+ +VK+A M P+R+
Sbjct: 23 LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,501,621
Number of Sequences: 62578
Number of extensions: 740121
Number of successful extensions: 1831
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1655
Number of HSP's gapped (non-prelim): 109
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)