Query 006411
Match_columns 646
No_of_seqs 328 out of 1903
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 22:54:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-52 2.5E-57 442.8 20.7 234 389-643 190-490 (491)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-50 3.1E-55 424.5 16.4 252 312-624 72-394 (406)
3 KOG0727 26S proteasome regulat 100.0 2.6E-49 5.7E-54 399.9 14.1 250 312-622 76-396 (408)
4 KOG0739 AAA+-type ATPase [Post 100.0 8.5E-48 1.8E-52 395.6 15.0 230 392-643 114-437 (439)
5 KOG0730 AAA+-type ATPase [Post 100.0 8.2E-47 1.8E-51 418.3 17.6 256 342-640 373-692 (693)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 6.6E-46 1.4E-50 407.0 18.6 242 374-642 478-789 (802)
7 KOG0736 Peroxisome assembly fa 100.0 1.1E-44 2.4E-49 404.8 20.3 237 382-642 646-952 (953)
8 KOG0740 AAA+-type ATPase [Post 100.0 3.9E-42 8.5E-47 371.0 20.1 239 384-645 126-427 (428)
9 KOG0737 AAA+-type ATPase [Post 100.0 1.1E-39 2.4E-44 343.6 17.7 225 398-644 79-383 (386)
10 KOG0726 26S proteasome regulat 100.0 9.4E-40 2E-44 335.5 14.5 247 315-622 109-426 (440)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-38 3.8E-43 348.8 18.8 216 403-641 182-523 (802)
12 TIGR01243 CDC48 AAA family ATP 100.0 5.5E-37 1.2E-41 353.0 22.1 240 380-645 426-733 (733)
13 KOG0728 26S proteasome regulat 100.0 1.3E-36 2.9E-41 307.6 12.6 189 402-624 138-390 (404)
14 KOG0734 AAA+-type ATPase conta 100.0 6.6E-36 1.4E-40 324.7 15.2 180 405-622 298-541 (752)
15 COG0464 SpoVK ATPases of the A 100.0 4.1E-35 8.9E-40 322.7 18.3 209 381-637 218-492 (494)
16 KOG0652 26S proteasome regulat 100.0 3.1E-35 6.6E-40 299.0 13.6 190 401-624 161-414 (424)
17 PTZ00454 26S protease regulato 100.0 9.5E-35 2.1E-39 314.1 16.6 249 314-625 68-389 (398)
18 KOG0729 26S proteasome regulat 100.0 5.2E-34 1.1E-38 290.7 16.2 187 402-622 168-418 (435)
19 KOG0735 AAA+-type ATPase [Post 100.0 9.8E-34 2.1E-38 315.1 18.0 232 379-641 638-935 (952)
20 PTZ00361 26 proteosome regulat 100.0 8.6E-33 1.9E-37 301.9 15.9 248 313-623 105-425 (438)
21 KOG0731 AAA+-type ATPase conta 100.0 1E-31 2.2E-36 305.2 16.2 184 403-623 303-554 (774)
22 KOG0732 AAA+-type ATPase conta 100.0 4.6E-31 1E-35 306.3 12.6 204 402-628 256-531 (1080)
23 PRK03992 proteasome-activating 100.0 3.3E-30 7.1E-35 277.7 17.3 193 401-629 121-379 (389)
24 COG0465 HflB ATP-dependent Zn 100.0 1.4E-30 3E-35 291.2 13.8 182 404-622 143-390 (596)
25 CHL00195 ycf46 Ycf46; Provisio 100.0 1.3E-29 2.9E-34 280.2 20.1 195 405-641 222-484 (489)
26 COG1223 Predicted ATPase (AAA+ 100.0 7.6E-30 1.6E-34 259.7 14.2 184 404-626 114-359 (368)
27 TIGR03689 pup_AAA proteasome A 100.0 3.9E-29 8.5E-34 277.3 18.3 151 398-570 169-367 (512)
28 KOG0651 26S proteasome regulat 100.0 8.8E-30 1.9E-34 264.0 11.4 185 403-623 124-374 (388)
29 KOG0730 AAA+-type ATPase [Post 100.0 4.5E-29 9.7E-34 277.7 17.4 192 406-641 180-446 (693)
30 TIGR01242 26Sp45 26S proteasom 100.0 3.2E-28 6.9E-33 259.1 16.7 185 402-622 113-363 (364)
31 TIGR01241 FtsH_fam ATP-depende 100.0 4.8E-28 1E-32 267.7 18.0 186 402-624 46-297 (495)
32 KOG0741 AAA+-type ATPase [Post 99.9 5.3E-27 1.2E-31 255.5 14.3 210 404-635 212-505 (744)
33 CHL00176 ftsH cell division pr 99.9 1.6E-25 3.4E-30 254.8 18.8 183 403-622 175-423 (638)
34 TIGR01243 CDC48 AAA family ATP 99.9 2.1E-25 4.6E-30 257.3 18.9 212 404-638 171-462 (733)
35 PRK10733 hflB ATP-dependent me 99.9 5.7E-25 1.2E-29 250.8 16.6 184 405-625 146-395 (644)
36 CHL00206 ycf2 Ycf2; Provisiona 99.9 7.7E-24 1.7E-28 255.3 13.7 122 460-623 1720-1878(2281)
37 PLN00020 ribulose bisphosphate 99.8 1.4E-20 3.1E-25 201.2 11.8 153 407-584 111-328 (413)
38 KOG0743 AAA+-type ATPase [Post 99.6 1.4E-15 3.1E-20 165.2 10.6 146 407-570 197-372 (457)
39 COG0464 SpoVK ATPases of the A 99.6 2.4E-14 5.2E-19 158.5 15.1 180 429-640 2-253 (494)
40 PF00004 AAA: ATPase family as 99.5 3.3E-14 7.2E-19 127.1 10.4 92 454-567 39-132 (132)
41 KOG0744 AAA+-type ATPase [Post 99.4 2.2E-13 4.7E-18 143.4 8.7 142 410-570 141-329 (423)
42 CHL00181 cbbX CbbX; Provisiona 99.4 9.5E-13 2E-17 137.5 12.7 154 411-595 23-261 (287)
43 KOG0742 AAA+-type ATPase [Post 99.4 1.5E-12 3.1E-17 140.4 12.8 139 404-570 348-517 (630)
44 TIGR02880 cbbX_cfxQ probable R 99.3 2.4E-11 5.1E-16 126.7 12.9 129 411-570 22-197 (284)
45 TIGR02881 spore_V_K stage V sp 99.3 2.5E-11 5.4E-16 124.3 12.4 140 410-584 5-190 (261)
46 TIGR02639 ClpA ATP-dependent C 99.2 5.3E-10 1.2E-14 130.2 16.7 193 408-642 179-453 (731)
47 KOG0736 Peroxisome assembly fa 99.2 1.5E-10 3.3E-15 132.2 11.8 164 454-640 472-683 (953)
48 KOG0735 AAA+-type ATPase [Post 99.1 8.2E-10 1.8E-14 125.5 12.8 186 411-636 408-674 (952)
49 TIGR00763 lon ATP-dependent pr 98.9 3.4E-09 7.4E-14 124.3 11.8 121 412-569 321-493 (775)
50 PRK11034 clpA ATP-dependent Cl 98.9 1.6E-08 3.4E-13 118.5 15.5 87 454-570 260-351 (758)
51 PRK00080 ruvB Holliday junctio 98.9 7.8E-08 1.7E-12 101.7 18.3 195 406-642 20-273 (328)
52 TIGR00635 ruvB Holliday juncti 98.9 8.9E-08 1.9E-12 99.3 18.3 122 409-570 2-161 (305)
53 PRK10865 protein disaggregatio 98.8 3.3E-08 7.2E-13 117.3 11.9 120 408-570 175-343 (857)
54 TIGR03345 VI_ClpV1 type VI sec 98.7 8E-08 1.7E-12 114.0 12.4 121 407-570 183-352 (852)
55 TIGR02902 spore_lonB ATP-depen 98.7 1.8E-07 3.9E-12 105.8 13.8 59 400-470 54-112 (531)
56 PRK07940 DNA polymerase III su 98.7 1.7E-07 3.6E-12 102.6 12.3 123 409-570 3-178 (394)
57 CHL00095 clpC Clp protease ATP 98.6 1.7E-07 3.7E-12 110.9 12.8 121 407-570 175-343 (821)
58 TIGR03346 chaperone_ClpB ATP-d 98.6 2.1E-07 4.5E-12 110.5 12.0 121 407-570 169-338 (852)
59 TIGR02928 orc1/cdc6 family rep 98.5 1.3E-06 2.8E-11 92.6 13.0 34 537-570 164-201 (365)
60 PRK14962 DNA polymerase III su 98.4 4.2E-06 9.1E-11 93.7 14.9 120 403-570 6-178 (472)
61 PF09336 Vps4_C: Vps4 C termin 98.4 2.5E-07 5.5E-12 76.6 3.6 35 608-642 28-62 (62)
62 PRK14961 DNA polymerase III su 98.4 6.3E-06 1.4E-10 88.9 14.4 141 403-570 8-180 (363)
63 TIGR02397 dnaX_nterm DNA polym 98.3 3.7E-06 7.9E-11 88.7 12.0 144 403-570 6-178 (355)
64 PRK04195 replication factor C 98.3 3.3E-06 7.2E-11 94.3 11.6 126 403-570 6-162 (482)
65 PHA02544 44 clamp loader, smal 98.3 4.4E-06 9.5E-11 87.2 11.0 122 402-570 12-162 (316)
66 PRK14970 DNA polymerase III su 98.3 1.7E-05 3.7E-10 85.0 15.1 120 403-570 9-169 (367)
67 PRK00411 cdc6 cell division co 98.2 2.5E-05 5.4E-10 83.9 16.1 48 521-570 158-209 (394)
68 PF05496 RuvB_N: Holliday junc 98.2 5.1E-06 1.1E-10 85.1 10.2 134 406-585 19-192 (233)
69 PRK14963 DNA polymerase III su 98.2 1.8E-05 3.9E-10 89.4 14.9 142 402-570 5-177 (504)
70 PRK10787 DNA-binding ATP-depen 98.2 1.3E-05 2.7E-10 94.9 13.7 133 412-586 323-507 (784)
71 PRK12402 replication factor C 98.2 6.9E-06 1.5E-10 85.8 9.9 54 404-469 8-61 (337)
72 PRK13342 recombination factor 98.2 1.9E-05 4.2E-10 86.5 13.7 126 404-584 5-163 (413)
73 PRK07133 DNA polymerase III su 98.2 2E-05 4.2E-10 92.2 13.9 141 402-570 9-179 (725)
74 KOG0740 AAA+-type ATPase [Post 98.2 1.1E-07 2.4E-12 104.5 -4.4 225 7-280 129-356 (428)
75 COG2256 MGS1 ATPase related to 98.2 1E-05 2.2E-10 88.4 10.5 126 406-586 19-177 (436)
76 PRK14956 DNA polymerase III su 98.1 1.2E-05 2.6E-10 90.2 11.3 119 403-569 10-181 (484)
77 PRK05563 DNA polymerase III su 98.1 3.2E-05 6.8E-10 88.4 14.6 144 402-570 7-180 (559)
78 PRK12323 DNA polymerase III su 98.1 9.2E-06 2E-10 93.8 10.1 141 403-570 8-185 (700)
79 KOG0741 AAA+-type ATPase [Post 98.1 3.3E-05 7.1E-10 86.7 13.5 106 442-570 536-674 (744)
80 TIGR00390 hslU ATP-dependent p 98.1 1.4E-05 3.1E-10 88.2 10.6 92 474-586 249-380 (441)
81 PRK07003 DNA polymerase III su 98.1 2.3E-05 4.9E-10 91.8 12.6 141 403-570 8-180 (830)
82 PRK08691 DNA polymerase III su 98.1 2E-05 4.4E-10 91.6 12.0 144 403-570 8-180 (709)
83 PRK05201 hslU ATP-dependent pr 98.1 1.7E-05 3.7E-10 87.8 10.4 76 474-570 251-337 (443)
84 PRK06645 DNA polymerase III su 98.1 6.2E-05 1.3E-09 85.2 14.8 144 403-570 13-189 (507)
85 PRK05342 clpX ATP-dependent pr 98.0 7.6E-05 1.6E-09 82.5 15.0 114 413-547 73-239 (412)
86 PRK00149 dnaA chromosomal repl 98.0 5.8E-05 1.3E-09 83.6 14.1 125 404-570 115-282 (450)
87 PLN03025 replication factor C 98.0 4E-05 8.6E-10 81.1 11.7 119 403-570 5-160 (319)
88 PRK14964 DNA polymerase III su 98.0 7.1E-05 1.5E-09 84.3 14.2 143 403-570 5-177 (491)
89 TIGR00362 DnaA chromosomal rep 98.0 0.00014 3E-09 79.4 15.9 125 404-570 103-270 (405)
90 PRK14960 DNA polymerase III su 98.0 7.8E-05 1.7E-09 86.4 14.3 145 403-570 7-179 (702)
91 PRK14969 DNA polymerase III su 98.0 4.8E-05 1E-09 86.4 12.3 139 403-570 8-180 (527)
92 PRK14958 DNA polymerase III su 98.0 5.3E-05 1.2E-09 85.7 12.0 144 403-569 8-179 (509)
93 PRK06305 DNA polymerase III su 98.0 5.8E-05 1.3E-09 84.1 12.2 141 403-570 9-182 (451)
94 COG2255 RuvB Holliday junction 97.9 7.7E-05 1.7E-09 78.7 12.0 137 406-586 21-195 (332)
95 PRK14953 DNA polymerase III su 97.9 0.00012 2.7E-09 82.3 14.4 139 403-570 8-180 (486)
96 PRK14959 DNA polymerase III su 97.9 7.1E-05 1.5E-09 86.4 12.6 140 403-570 8-180 (624)
97 PRK00440 rfc replication facto 97.9 6.4E-05 1.4E-09 77.8 11.1 119 403-570 9-163 (319)
98 cd00009 AAA The AAA+ (ATPases 97.9 0.00013 2.8E-09 64.5 11.5 45 523-567 102-151 (151)
99 PRK08903 DnaA regulatory inact 97.9 0.00019 4.2E-09 71.7 14.1 122 404-570 11-159 (227)
100 TIGR03420 DnaA_homol_Hda DnaA 97.9 0.00022 4.7E-09 70.6 13.8 129 406-582 10-169 (226)
101 PRK14949 DNA polymerase III su 97.9 7E-05 1.5E-09 89.1 11.9 141 403-570 8-180 (944)
102 TIGR02903 spore_lon_C ATP-depe 97.9 5.1E-05 1.1E-09 87.6 10.4 61 397-469 140-200 (615)
103 PRK14951 DNA polymerase III su 97.9 0.00016 3.4E-09 83.7 14.0 47 520-570 139-185 (618)
104 PRK08451 DNA polymerase III su 97.9 0.00017 3.7E-09 82.1 13.9 140 403-570 6-178 (535)
105 PRK14957 DNA polymerase III su 97.8 0.0002 4.3E-09 81.8 14.0 141 403-570 8-180 (546)
106 PRK14955 DNA polymerase III su 97.8 0.00018 3.9E-09 78.8 12.7 143 403-570 8-188 (397)
107 PRK07994 DNA polymerase III su 97.8 0.00014 3E-09 84.5 11.6 141 403-570 8-180 (647)
108 PRK14965 DNA polymerase III su 97.8 8.8E-05 1.9E-09 85.1 9.9 144 403-570 8-180 (576)
109 KOG2004 Mitochondrial ATP-depe 97.8 0.00016 3.4E-09 83.7 11.7 146 411-595 411-640 (906)
110 TIGR00382 clpX endopeptidase C 97.8 0.00027 5.8E-09 78.2 13.2 115 412-547 78-247 (413)
111 PF05673 DUF815: Protein of un 97.7 0.00046 9.9E-09 71.7 13.2 128 403-570 19-196 (249)
112 KOG0989 Replication factor C, 97.7 0.00011 2.3E-09 78.2 8.8 121 402-570 27-191 (346)
113 PRK14950 DNA polymerase III su 97.7 0.00051 1.1E-08 79.0 14.9 140 403-570 8-181 (585)
114 PRK07764 DNA polymerase III su 97.7 0.00017 3.6E-09 85.9 11.2 141 402-569 6-180 (824)
115 PRK12422 chromosomal replicati 97.7 0.00091 2E-08 74.7 16.1 198 404-642 104-366 (445)
116 PRK05896 DNA polymerase III su 97.7 0.00018 4E-09 82.8 10.7 142 402-570 7-180 (605)
117 PRK11331 5-methylcytosine-spec 97.7 0.00027 5.9E-09 78.9 11.7 31 536-567 323-357 (459)
118 PRK14954 DNA polymerase III su 97.7 0.00081 1.8E-08 78.0 15.3 140 403-570 8-188 (620)
119 PRK11034 clpA ATP-dependent Cl 97.6 0.00039 8.5E-09 82.2 12.6 132 412-583 459-664 (758)
120 PRK14948 DNA polymerase III su 97.6 0.0004 8.6E-09 80.5 12.2 143 403-569 8-181 (620)
121 PTZ00112 origin recognition co 97.6 0.001 2.2E-08 79.2 15.2 79 459-570 854-938 (1164)
122 PRK14952 DNA polymerase III su 97.6 0.0004 8.6E-09 80.0 11.5 144 403-570 5-179 (584)
123 PRK06647 DNA polymerase III su 97.5 0.0012 2.6E-08 75.8 14.6 141 403-570 8-180 (563)
124 PRK09111 DNA polymerase III su 97.5 0.00056 1.2E-08 79.0 12.0 144 403-570 16-193 (598)
125 PRK14971 DNA polymerase III su 97.5 0.00098 2.1E-08 77.2 13.8 140 403-570 9-182 (614)
126 PRK05564 DNA polymerase III su 97.5 0.00067 1.4E-08 71.6 11.0 141 409-570 2-154 (313)
127 TIGR00678 holB DNA polymerase 97.4 0.001 2.2E-08 64.7 10.3 55 521-583 112-166 (188)
128 PRK06893 DNA replication initi 97.4 0.0012 2.6E-08 66.9 11.1 126 404-570 9-163 (229)
129 TIGR02639 ClpA ATP-dependent C 97.4 0.0018 3.9E-08 76.3 13.9 82 468-586 549-663 (731)
130 PRK13341 recombination factor 97.4 0.0012 2.7E-08 77.7 12.2 128 404-586 21-182 (725)
131 PRK08084 DNA replication initi 97.4 0.0044 9.5E-08 63.2 14.5 123 404-570 15-169 (235)
132 CHL00081 chlI Mg-protoporyphyr 97.3 0.0013 2.7E-08 71.6 11.0 54 405-470 11-64 (350)
133 COG0466 Lon ATP-dependent Lon 97.3 0.0013 2.8E-08 76.6 11.5 118 412-566 324-493 (782)
134 PRK14088 dnaA chromosomal repl 97.3 0.0027 5.9E-08 70.7 13.9 125 403-570 97-265 (440)
135 PRK13407 bchI magnesium chelat 97.3 0.0023 5E-08 69.1 11.8 53 518-570 141-204 (334)
136 PF07728 AAA_5: AAA domain (dy 97.2 0.00049 1.1E-08 63.3 5.2 22 538-559 114-139 (139)
137 smart00382 AAA ATPases associa 97.2 0.0016 3.4E-08 56.6 8.0 87 454-568 60-147 (148)
138 PRK09112 DNA polymerase III su 97.1 0.0036 7.8E-08 68.0 11.5 49 518-570 154-202 (351)
139 PRK07399 DNA polymerase III su 97.1 0.0043 9.4E-08 66.3 11.7 134 409-570 2-184 (314)
140 KOG2028 ATPase related to the 97.0 0.0039 8.4E-08 68.2 10.0 114 405-568 132-282 (554)
141 TIGR00764 lon_rel lon-related 97.0 0.014 3E-07 67.8 15.2 57 404-474 11-108 (608)
142 COG1474 CDC6 Cdc6-related prot 96.9 0.015 3.2E-07 63.6 14.4 128 411-583 17-201 (366)
143 TIGR02640 gas_vesic_GvpN gas v 96.9 0.012 2.5E-07 61.1 12.9 32 538-570 151-187 (262)
144 COG0542 clpA ATP-binding subun 96.9 0.006 1.3E-07 72.2 11.7 87 454-570 244-335 (786)
145 PRK08727 hypothetical protein; 96.9 0.017 3.8E-07 58.8 13.3 103 445-583 42-173 (233)
146 PRK07471 DNA polymerase III su 96.9 0.012 2.7E-07 64.2 12.8 49 518-570 154-202 (365)
147 TIGR03345 VI_ClpV1 type VI sec 96.8 0.013 2.9E-07 70.4 14.0 136 411-590 566-785 (852)
148 PRK08058 DNA polymerase III su 96.8 0.013 2.7E-07 62.9 12.5 135 409-570 3-171 (329)
149 PRK14086 dnaA chromosomal repl 96.7 0.031 6.7E-07 65.0 15.6 30 541-570 413-448 (617)
150 PRK06620 hypothetical protein; 96.7 0.017 3.8E-07 58.3 12.1 131 403-584 8-159 (214)
151 CHL00095 clpC Clp protease ATP 96.7 0.015 3.3E-07 69.5 13.0 141 411-591 509-738 (821)
152 TIGR03346 chaperone_ClpB ATP-d 96.7 0.02 4.4E-07 68.8 13.9 47 411-460 565-611 (852)
153 PF13177 DNA_pol3_delta2: DNA 96.7 0.014 3E-07 56.4 10.2 47 517-567 114-160 (162)
154 COG2812 DnaX DNA polymerase II 96.6 0.0053 1.1E-07 69.8 8.2 140 402-561 7-172 (515)
155 PF05621 TniB: Bacterial TniB 96.6 0.033 7.3E-07 59.6 13.6 25 462-486 135-159 (302)
156 PRK06964 DNA polymerase III su 96.5 0.0041 9E-08 67.4 6.3 49 518-570 145-193 (342)
157 PF07724 AAA_2: AAA domain (Cd 96.5 0.011 2.4E-07 57.8 8.6 54 475-550 71-132 (171)
158 PRK05642 DNA replication initi 96.5 0.043 9.3E-07 56.0 13.1 128 403-570 11-168 (234)
159 COG0714 MoxR-like ATPases [Gen 96.4 0.015 3.3E-07 61.9 9.5 49 521-570 128-191 (329)
160 PHA02244 ATPase-like protein 96.4 0.016 3.4E-07 63.8 9.7 34 536-570 219-263 (383)
161 PF00308 Bac_DnaA: Bacterial d 96.4 0.046 9.9E-07 55.4 12.4 133 405-583 2-177 (219)
162 TIGR02030 BchI-ChlI magnesium 96.3 0.027 5.8E-07 61.1 11.1 52 519-570 145-207 (337)
163 COG1220 HslU ATP-dependent pro 96.2 0.045 9.7E-07 59.7 11.7 76 473-569 251-337 (444)
164 COG0470 HolB ATPase involved i 96.2 0.042 9.1E-07 56.9 11.3 46 521-570 125-170 (325)
165 TIGR02442 Cob-chelat-sub cobal 96.1 0.039 8.4E-07 64.4 11.5 53 518-570 139-202 (633)
166 PRK13531 regulatory ATPase Rav 96.0 0.1 2.2E-06 59.4 14.1 53 518-570 120-182 (498)
167 TIGR00368 Mg chelatase-related 96.0 0.056 1.2E-06 61.5 12.2 55 537-591 337-422 (499)
168 PRK09087 hypothetical protein; 96.0 0.063 1.4E-06 54.8 11.1 91 445-570 45-155 (226)
169 PRK10865 protein disaggregatio 95.9 0.066 1.4E-06 64.6 12.8 67 520-590 685-784 (857)
170 PRK05707 DNA polymerase III su 95.9 0.021 4.5E-07 61.5 7.7 49 518-570 119-167 (328)
171 PRK07993 DNA polymerase III su 95.3 0.12 2.7E-06 55.8 10.7 49 518-570 121-169 (334)
172 PRK08769 DNA polymerase III su 95.1 0.28 6E-06 53.0 12.8 48 519-570 127-174 (319)
173 TIGR01650 PD_CobS cobaltochela 95.0 0.097 2.1E-06 56.7 8.8 34 537-570 177-222 (327)
174 smart00350 MCM minichromosome 94.9 0.15 3.3E-06 58.0 10.6 34 537-570 342-389 (509)
175 COG0593 DnaA ATPase involved i 94.9 0.37 8.1E-06 53.7 13.3 126 403-570 79-246 (408)
176 COG2607 Predicted ATPase (AAA+ 94.8 0.77 1.7E-05 48.4 14.3 135 402-554 51-190 (287)
177 TIGR00602 rad24 checkpoint pro 94.7 0.35 7.5E-06 56.8 13.1 44 403-453 76-119 (637)
178 PRK14087 dnaA chromosomal repl 94.7 0.23 5E-06 55.8 11.2 24 444-467 141-164 (450)
179 COG0542 clpA ATP-binding subun 94.6 0.44 9.6E-06 57.0 13.6 129 411-582 491-702 (786)
180 KOG0990 Replication factor C, 94.4 0.43 9.4E-06 51.8 11.9 119 402-568 32-191 (360)
181 PRK06871 DNA polymerase III su 94.1 0.29 6.2E-06 53.0 10.0 49 518-570 120-168 (325)
182 TIGR02031 BchD-ChlD magnesium 94.0 1.4 3E-05 51.4 15.9 110 519-643 98-221 (589)
183 PRK06090 DNA polymerase III su 94.0 0.32 7E-06 52.5 10.1 49 518-570 121-169 (319)
184 COG0606 Predicted ATPase with 94.0 0.45 9.9E-06 53.9 11.5 42 550-591 361-411 (490)
185 KOG1969 DNA replication checkp 93.9 0.29 6.2E-06 57.9 10.0 50 540-591 440-491 (877)
186 PRK04132 replication factor C 93.3 0.89 1.9E-05 55.1 13.0 76 458-570 610-691 (846)
187 PRK09862 putative ATP-dependen 93.2 0.4 8.6E-06 54.9 9.4 46 537-582 336-411 (506)
188 PRK07276 DNA polymerase III su 93.1 0.48 1E-05 50.6 9.4 44 521-568 120-163 (290)
189 PRK11608 pspF phage shock prot 92.9 1.2 2.6E-05 47.9 12.2 50 410-469 5-54 (326)
190 COG1219 ClpX ATP-dependent pro 92.0 0.19 4.1E-06 54.6 4.6 131 413-562 63-250 (408)
191 TIGR02974 phageshock_pspF psp 91.7 1.3 2.8E-05 47.8 10.6 45 537-583 133-185 (329)
192 TIGR01817 nifA Nif-specific re 91.6 1.8 4E-05 49.3 12.3 55 405-469 190-244 (534)
193 PRK15424 propionate catabolism 91.0 1.4 3.1E-05 50.8 10.7 50 408-467 216-265 (538)
194 PRK05917 DNA polymerase III su 90.8 2.1 4.7E-05 45.8 11.0 60 518-581 108-168 (290)
195 TIGR02329 propionate_PrpR prop 90.7 2.3 5E-05 49.0 12.0 59 407-475 208-267 (526)
196 TIGR03015 pepcterm_ATPase puta 90.7 2 4.3E-05 43.7 10.4 20 466-485 117-136 (269)
197 PF03969 AFG1_ATPase: AFG1-lik 90.4 0.34 7.4E-06 53.1 4.9 23 442-465 60-82 (362)
198 PTZ00111 DNA replication licen 89.9 1.8 4E-05 52.7 10.6 34 537-570 599-646 (915)
199 KOG0745 Putative ATP-dependent 89.0 0.9 2E-05 51.3 6.6 95 456-569 271-387 (564)
200 PF00158 Sigma54_activat: Sigm 89.0 1.2 2.6E-05 43.6 6.9 54 413-476 1-55 (168)
201 PRK05022 anaerobic nitric oxid 88.9 4.4 9.5E-05 46.2 12.4 51 409-469 185-235 (509)
202 PRK15429 formate hydrogenlyase 88.8 3.3 7.2E-05 48.9 11.6 63 407-479 372-434 (686)
203 KOG2228 Origin recognition com 88.7 2.6 5.7E-05 46.4 9.7 57 525-584 158-218 (408)
204 PF12775 AAA_7: P-loop contain 87.8 1.8 4E-05 45.5 7.8 33 537-570 147-182 (272)
205 KOG1051 Chaperone HSP104 and r 87.7 1.8 4E-05 52.6 8.6 98 411-547 562-710 (898)
206 PF14532 Sigma54_activ_2: Sigm 87.0 2.2 4.7E-05 39.7 7.0 23 445-467 22-44 (138)
207 KOG0482 DNA replication licens 86.8 3.3 7.2E-05 47.7 9.5 132 412-570 343-528 (721)
208 PLN03210 Resistant to P. syrin 86.7 11 0.00024 47.3 14.9 66 405-480 178-243 (1153)
209 COG1221 PspF Transcriptional r 86.5 6.6 0.00014 44.0 11.6 159 405-585 72-264 (403)
210 PRK10820 DNA-binding transcrip 86.4 8.4 0.00018 44.2 12.7 54 405-468 198-251 (520)
211 PRK11388 DNA-binding transcrip 85.6 7.5 0.00016 45.4 12.1 61 406-476 320-381 (638)
212 KOG2227 Pre-initiation complex 85.4 6.9 0.00015 44.8 11.0 50 528-583 281-336 (529)
213 PF07726 AAA_3: ATPase family 85.0 2.5 5.5E-05 40.4 6.4 40 520-559 77-129 (131)
214 PRK06526 transposase; Provisio 85.0 2.2 4.8E-05 44.5 6.7 17 444-460 98-114 (254)
215 PRK05818 DNA polymerase III su 84.0 2.4 5.3E-05 44.8 6.5 49 518-570 101-149 (261)
216 smart00763 AAA_PrkA PrkA AAA d 83.0 1.9 4.2E-05 47.5 5.5 56 410-471 49-105 (361)
217 PRK08699 DNA polymerase III su 82.8 3.7 8E-05 44.4 7.4 49 518-570 126-174 (325)
218 KOG1514 Origin recognition com 82.0 17 0.00036 43.6 12.6 90 460-582 495-586 (767)
219 TIGR01618 phage_P_loop phage n 81.4 4.7 0.0001 41.5 7.2 62 472-545 81-142 (220)
220 cd01120 RecA-like_NTPases RecA 81.2 7.7 0.00017 35.2 8.0 27 460-486 73-99 (165)
221 PRK13406 bchD magnesium chelat 81.1 21 0.00046 41.9 13.2 52 519-570 107-171 (584)
222 PRK08116 hypothetical protein; 80.0 6.9 0.00015 41.1 8.1 70 404-480 78-150 (268)
223 KOG0478 DNA replication licens 79.3 9.1 0.0002 45.6 9.3 142 390-570 416-615 (804)
224 KOG0991 Replication factor C, 78.7 3.2 6.9E-05 43.9 5.0 39 403-453 19-57 (333)
225 PRK11361 acetoacetate metaboli 78.4 25 0.00055 38.7 12.3 50 409-468 141-190 (457)
226 PRK08181 transposase; Validate 78.0 5.4 0.00012 42.2 6.6 34 444-477 106-139 (269)
227 PF13304 AAA_21: AAA domain; P 77.6 3.2 6.9E-05 39.3 4.4 32 454-485 237-270 (303)
228 KOG0479 DNA replication licens 77.3 10 0.00022 44.5 8.9 119 412-563 302-479 (818)
229 PF01078 Mg_chelatase: Magnesi 76.5 3.5 7.6E-05 42.2 4.5 42 409-464 1-42 (206)
230 KOG2383 Predicted ATPase [Gene 76.5 13 0.00029 41.9 9.2 55 409-466 79-135 (467)
231 PF05707 Zot: Zonular occluden 75.5 4.2 9.2E-05 40.2 4.7 69 472-569 79-147 (193)
232 COG3829 RocR Transcriptional r 74.9 9.1 0.0002 44.4 7.7 51 404-464 238-288 (560)
233 PRK07132 DNA polymerase III su 74.8 25 0.00054 37.9 10.6 49 518-570 103-151 (299)
234 KOG0732 AAA+-type ATPase conta 74.3 2.9 6.4E-05 51.6 3.9 135 454-624 635-781 (1080)
235 TIGR02915 PEP_resp_reg putativ 74.2 41 0.00089 37.1 12.5 49 409-467 137-185 (445)
236 PRK10923 glnG nitrogen regulat 74.1 25 0.00054 39.1 10.8 50 409-468 136-185 (469)
237 COG1239 ChlI Mg-chelatase subu 72.6 18 0.0004 40.8 9.2 52 519-570 158-220 (423)
238 TIGR01818 ntrC nitrogen regula 70.2 42 0.0009 37.2 11.4 45 538-584 269-321 (463)
239 PF00493 MCM: MCM2/3/5 family 69.5 0.83 1.8E-05 49.3 -2.0 32 538-569 164-209 (331)
240 COG1485 Predicted ATPase [Gene 68.3 24 0.00051 39.2 8.7 24 520-548 148-171 (367)
241 PF00910 RNA_helicase: RNA hel 67.2 6.8 0.00015 35.1 3.8 17 447-463 1-17 (107)
242 PRK13765 ATP-dependent proteas 66.8 41 0.00089 40.0 10.9 95 538-635 277-412 (637)
243 cd01124 KaiC KaiC is a circadi 66.4 20 0.00043 34.2 7.0 26 461-486 84-109 (187)
244 PRK15455 PrkA family serine pr 66.3 7.7 0.00017 45.7 4.8 56 409-470 74-129 (644)
245 PF00145 DNA_methylase: C-5 cy 65.9 8 0.00017 40.0 4.5 28 459-486 89-116 (335)
246 KOG1051 Chaperone HSP104 and r 65.1 9.1 0.0002 46.9 5.3 95 445-570 251-352 (898)
247 PRK06581 DNA polymerase III su 64.4 20 0.00043 38.1 6.9 75 459-570 72-150 (263)
248 PRK15115 response regulator Gl 63.7 41 0.00088 37.1 9.7 25 445-469 158-182 (444)
249 PF12846 AAA_10: AAA-like doma 63.7 13 0.00028 37.7 5.4 66 471-569 219-289 (304)
250 PRK14722 flhF flagellar biosyn 63.1 55 0.0012 36.5 10.5 38 520-557 231-268 (374)
251 KOG2035 Replication factor C, 62.5 99 0.0021 33.9 11.7 42 525-570 147-188 (351)
252 COG1241 MCM2 Predicted ATPase 61.6 11 0.00025 44.8 5.1 56 411-468 286-343 (682)
253 COG1224 TIP49 DNA helicase TIP 60.4 91 0.002 35.2 11.3 85 457-583 275-372 (450)
254 COG4619 ABC-type uncharacteriz 59.5 78 0.0017 32.5 9.8 139 391-567 43-209 (223)
255 TIGR02012 tigrfam_recA protein 59.2 23 0.0005 38.6 6.6 72 458-546 119-190 (321)
256 PRK12377 putative replication 58.9 29 0.00063 36.3 7.1 73 400-482 63-139 (248)
257 PF06068 TIP49: TIP49 C-termin 56.2 15 0.00032 41.2 4.5 68 473-582 279-358 (398)
258 COG2204 AtoC Response regulato 56.2 76 0.0016 36.5 10.2 52 408-469 138-189 (464)
259 PRK08939 primosomal protein Dn 56.1 18 0.00039 38.9 5.1 37 443-479 155-191 (306)
260 PRK07952 DNA replication prote 54.8 42 0.00092 35.0 7.5 75 400-484 61-139 (244)
261 KOG1942 DNA helicase, TBP-inte 54.3 54 0.0012 36.1 8.2 87 455-583 278-378 (456)
262 PF01637 Arch_ATPase: Archaeal 54.1 25 0.00055 34.0 5.4 95 456-584 101-203 (234)
263 PRK08485 DNA polymerase III su 53.8 1E+02 0.0022 31.9 9.7 37 521-560 70-106 (206)
264 cd01121 Sms Sms (bacterial rad 53.5 33 0.00071 38.0 6.7 26 461-486 147-172 (372)
265 PF13401 AAA_22: AAA domain; P 53.1 45 0.00098 29.7 6.5 29 456-484 71-99 (131)
266 TIGR00675 dcm DNA-methyltransf 52.7 41 0.00089 36.1 7.2 42 445-486 60-114 (315)
267 CHL00195 ycf46 Ycf46; Provisio 51.6 2.1E+02 0.0045 33.1 12.9 64 472-570 81-144 (489)
268 COG3604 FhlA Transcriptional r 49.4 76 0.0017 37.0 8.8 51 404-464 216-266 (550)
269 COG2874 FlaH Predicted ATPases 49.3 30 0.00064 36.3 5.1 74 454-559 105-178 (235)
270 cd00983 recA RecA is a bacter 48.8 43 0.00093 36.6 6.6 29 458-486 119-147 (325)
271 COG1067 LonB Predicted ATP-dep 47.4 1.3E+02 0.0028 36.1 10.7 21 606-626 383-403 (647)
272 PRK13853 type IV secretion sys 46.3 72 0.0016 38.7 8.6 77 471-580 626-716 (789)
273 PF07693 KAP_NTPase: KAP famil 45.7 58 0.0012 34.0 6.9 86 461-584 160-262 (325)
274 PRK05541 adenylylsulfate kinas 45.0 97 0.0021 29.7 7.8 37 443-479 6-42 (176)
275 COG1484 DnaC DNA replication p 44.9 78 0.0017 33.1 7.6 73 402-485 70-146 (254)
276 PRK10365 transcriptional regul 44.6 1.5E+02 0.0032 32.5 10.1 11 538-548 274-284 (441)
277 cd00316 Oxidoreductase_nitroge 44.5 1.3E+02 0.0029 32.5 9.6 121 454-582 62-200 (399)
278 PF01583 APS_kinase: Adenylyls 43.4 43 0.00094 32.9 5.1 41 445-486 3-43 (156)
279 PF14516 AAA_35: AAA-like doma 43.1 56 0.0012 35.3 6.4 16 471-486 126-141 (331)
280 KOG0480 DNA replication licens 42.5 2.3E+02 0.0049 34.3 11.3 55 410-467 344-401 (764)
281 PF13191 AAA_16: AAA ATPase do 42.1 40 0.00086 31.7 4.6 53 413-474 2-54 (185)
282 PRK13765 ATP-dependent proteas 41.5 35 0.00075 40.6 4.9 49 404-466 24-72 (637)
283 KOG1968 Replication factor C, 41.0 23 0.00049 43.6 3.3 32 539-570 460-491 (871)
284 TIGR02237 recomb_radB DNA repa 41.0 42 0.00091 33.0 4.7 31 456-486 81-111 (209)
285 COG0270 Dcm Site-specific DNA 40.4 45 0.00098 36.0 5.2 27 460-486 96-122 (328)
286 PRK12723 flagellar biosynthesi 39.6 2.7E+02 0.0059 31.2 11.2 59 522-581 273-335 (388)
287 cd01974 Nitrogenase_MoFe_beta 38.9 1.8E+02 0.004 32.6 9.8 33 454-486 67-109 (435)
288 KOG2170 ATPase of the AAA+ sup 38.8 82 0.0018 34.7 6.7 70 412-486 83-192 (344)
289 TIGR02932 vnfK_nitrog V-contai 38.7 1.8E+02 0.0039 33.2 9.8 33 454-486 71-114 (457)
290 PF05729 NACHT: NACHT domain 38.3 1.2E+02 0.0027 27.6 7.1 22 465-486 74-95 (166)
291 COG1136 SalX ABC-type antimicr 38.2 1.4E+02 0.003 31.3 8.0 73 455-566 144-216 (226)
292 smart00763 AAA_PrkA PrkA AAA d 37.6 49 0.0011 36.8 5.0 50 520-570 251-315 (361)
293 cd03466 Nitrogenase_NifN_2 Nit 37.4 1.4E+02 0.0031 33.4 8.7 107 454-563 66-184 (429)
294 PF00148 Oxidored_nitro: Nitro 37.3 67 0.0015 35.0 6.0 120 454-580 56-190 (398)
295 PF05872 DUF853: Bacterial pro 37.2 39 0.00085 38.9 4.2 90 460-582 238-332 (502)
296 TIGR00929 VirB4_CagE type IV s 36.6 1.2E+02 0.0025 36.3 8.3 78 470-580 627-718 (785)
297 PRK07452 DNA polymerase III su 36.4 5E+02 0.011 27.5 12.2 47 519-568 78-127 (326)
298 PRK06835 DNA replication prote 36.3 89 0.0019 34.1 6.7 39 444-482 183-221 (329)
299 PF08298 AAA_PrkA: PrkA AAA do 35.9 56 0.0012 36.3 5.1 55 411-471 61-115 (358)
300 KOG2680 DNA helicase TIP49, TB 35.9 1.2E+02 0.0027 33.5 7.4 38 540-582 319-368 (454)
301 CHL00073 chlN photochlorophyll 35.4 1.7E+02 0.0038 33.6 9.0 133 443-580 53-236 (457)
302 PF09820 AAA-ATPase_like: Pred 34.9 93 0.002 33.0 6.4 30 457-486 126-157 (284)
303 cd01965 Nitrogenase_MoFe_beta_ 34.1 3E+02 0.0066 30.7 10.6 90 454-549 63-168 (428)
304 cd01129 PulE-GspE PulE/GspE Th 33.1 83 0.0018 33.0 5.6 63 408-484 57-120 (264)
305 cd01122 GP4d_helicase GP4d_hel 32.8 73 0.0016 32.6 5.1 30 457-486 125-154 (271)
306 COG3950 Predicted ATP-binding 32.6 59 0.0013 36.4 4.5 81 391-486 215-309 (440)
307 PRK14478 nitrogenase molybdenu 31.7 1.8E+02 0.0039 33.2 8.4 125 454-582 101-238 (475)
308 PRK09519 recA DNA recombinatio 31.6 92 0.002 38.1 6.3 82 445-545 113-194 (790)
309 PF10923 DUF2791: P-loop Domai 31.6 4E+02 0.0086 30.4 10.9 98 459-582 224-343 (416)
310 cd01972 Nitrogenase_VnfE_like 31.6 3.9E+02 0.0085 29.9 10.9 122 454-581 71-212 (426)
311 PF08433 KTI12: Chromatin asso 31.5 1.2E+02 0.0026 32.1 6.6 38 447-484 4-41 (270)
312 CHL00076 chlB photochlorophyll 30.9 3.5E+02 0.0077 31.3 10.7 121 455-583 68-215 (513)
313 KOG0477 DNA replication licens 30.8 90 0.002 37.4 5.8 51 412-464 450-502 (854)
314 TIGR00064 ftsY signal recognit 30.1 1.6E+02 0.0036 31.0 7.3 38 442-479 70-107 (272)
315 cd01967 Nitrogenase_MoFe_alpha 29.9 3E+02 0.0065 30.2 9.6 122 454-581 69-206 (406)
316 TIGR01278 DPOR_BchB light-inde 29.7 3.1E+02 0.0067 31.6 9.9 119 454-581 67-208 (511)
317 PRK02910 light-independent pro 29.3 3.1E+02 0.0068 31.7 9.9 114 458-581 71-208 (519)
318 cd01976 Nitrogenase_MoFe_alpha 29.1 1.5E+02 0.0033 33.1 7.2 122 454-582 80-219 (421)
319 PRK13539 cytochrome c biogenes 28.8 1.1E+02 0.0024 30.3 5.4 68 462-569 135-202 (207)
320 cd03227 ABC_Class2 ABC-type Cl 28.7 1.6E+02 0.0035 28.1 6.4 14 471-484 98-111 (162)
321 cd00315 Cyt_C5_DNA_methylase C 28.7 2.4E+02 0.0051 29.7 8.2 42 445-486 63-117 (275)
322 COG4639 Predicted kinase [Gene 28.4 87 0.0019 31.4 4.5 95 445-569 3-107 (168)
323 PRK14476 nitrogenase molybdenu 27.8 1.7E+02 0.0037 33.3 7.3 33 454-486 74-116 (455)
324 PF02463 SMC_N: RecF/RecN/SMC 27.8 1.8E+02 0.0039 28.7 6.8 71 461-571 147-217 (220)
325 PRK04132 replication factor C 27.7 40 0.00087 41.4 2.5 40 402-453 10-49 (846)
326 PRK09354 recA recombinase A; P 27.2 1.5E+02 0.0031 33.0 6.4 21 466-486 132-152 (349)
327 COG2805 PilT Tfp pilus assembl 26.9 56 0.0012 36.0 3.1 93 444-557 124-219 (353)
328 PRK06762 hypothetical protein; 26.5 78 0.0017 29.9 3.8 38 444-485 2-39 (166)
329 TIGR01283 nifE nitrogenase mol 26.3 2.7E+02 0.0059 31.5 8.6 121 454-581 103-243 (456)
330 PRK10458 DNA cytosine methylas 26.3 1.1E+02 0.0024 35.1 5.6 27 460-486 207-233 (467)
331 TIGR01862 N2-ase-Ialpha nitrog 26.3 1.9E+02 0.0042 32.6 7.4 124 454-582 99-238 (443)
332 COG3854 SpoIIIAA ncharacterize 26.0 68 0.0015 34.3 3.4 20 465-484 211-230 (308)
333 TIGR01860 VNFD nitrogenase van 25.2 2E+02 0.0043 32.8 7.3 126 454-581 108-247 (461)
334 PRK14700 recombination factor 25.1 1.1E+02 0.0025 33.2 5.1 45 537-586 7-53 (300)
335 TIGR01279 DPOR_bchN light-inde 24.9 2.7E+02 0.0058 31.1 8.1 108 454-570 65-188 (407)
336 PF07218 RAP1: Rhoptry-associa 24.0 1.9E+02 0.0041 34.3 6.6 15 472-486 354-368 (782)
337 TIGR01613 primase_Cterm phage/ 24.0 1.5E+02 0.0033 31.4 5.8 37 416-458 54-90 (304)
338 COG5245 DYN1 Dynein, heavy cha 23.7 1.3E+02 0.0029 39.8 5.7 32 537-569 1610-1646(3164)
339 cd01973 Nitrogenase_VFe_beta_l 23.6 4.4E+02 0.0096 30.0 9.6 33 454-486 68-111 (454)
340 PF05272 VirE: Virulence-assoc 23.5 91 0.002 31.5 3.8 66 519-585 113-193 (198)
341 TIGR01861 ANFD nitrogenase iro 23.5 2.9E+02 0.0064 32.1 8.3 122 454-582 109-249 (513)
342 PF09807 DUF2348: Uncharacteri 23.5 5.2E+02 0.011 27.1 9.5 17 470-486 133-149 (249)
343 PRK04841 transcriptional regul 23.3 3.4E+02 0.0075 32.6 9.2 91 458-583 106-197 (903)
344 PRK13949 shikimate kinase; Pro 23.0 2.9E+02 0.0063 26.8 7.1 101 445-569 2-104 (169)
345 PF00488 MutS_V: MutS domain V 22.6 1.7E+02 0.0037 30.2 5.7 31 519-553 141-171 (235)
346 PF01695 IstB_IS21: IstB-like 22.5 98 0.0021 30.5 3.7 39 444-482 47-85 (178)
347 cd01133 F1-ATPase_beta F1 ATP 22.0 2E+02 0.0042 30.9 6.1 33 446-478 71-103 (274)
348 cd01968 Nitrogenase_NifE_I Nit 22.0 2.6E+02 0.0056 31.1 7.2 121 454-582 68-205 (410)
349 PRK06921 hypothetical protein; 21.8 1.2E+02 0.0025 32.0 4.3 39 444-482 117-156 (266)
350 KOG0481 DNA replication licens 21.8 1.5E+02 0.0032 35.0 5.3 63 391-464 319-384 (729)
351 COG1106 Predicted ATPases [Gen 21.7 1.3E+02 0.0029 33.6 4.8 56 473-561 271-326 (371)
352 PRK10416 signal recognition pa 21.6 2.8E+02 0.0061 30.1 7.3 64 416-479 85-149 (318)
353 TIGR02533 type_II_gspE general 21.4 1.4E+02 0.0031 34.3 5.2 64 407-484 218-283 (486)
354 PRK10263 DNA translocase FtsK; 21.3 1.8E+02 0.0038 37.8 6.3 35 536-570 1173-1209(1355)
355 TIGR01284 alt_nitrog_alph nitr 21.2 2.3E+02 0.005 32.2 6.8 124 454-581 106-245 (457)
356 PRK14477 bifunctional nitrogen 21.1 2.6E+02 0.0057 34.8 7.7 123 454-580 94-229 (917)
357 PRK09361 radB DNA repair and r 20.6 1.4E+02 0.003 29.8 4.4 28 458-486 94-121 (225)
358 PRK13898 type IV secretion sys 20.4 1.8E+02 0.0039 35.3 6.1 78 470-580 640-730 (800)
359 TIGR02746 TraC-F-type type-IV 20.3 3.5E+02 0.0076 32.5 8.4 67 471-568 636-707 (797)
360 TIGR03796 NHPM_micro_ABC1 NHPM 20.2 3E+02 0.0064 32.7 7.7 22 462-483 623-644 (710)
361 PRK11889 flhF flagellar biosyn 20.1 3.3E+02 0.0071 31.3 7.5 61 416-479 216-276 (436)
362 PRK00771 signal recognition pa 20.0 2.5E+02 0.0054 32.1 6.7 62 418-479 69-132 (437)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-52 Score=442.82 Aligned_cols=234 Identities=50% Similarity=0.858 Sum_probs=214.9
Q ss_pred hhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------
Q 006411 389 LEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------- 453 (646)
Q Consensus 389 ~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------- 453 (646)
++..+++.+...|++..|+|+|+||.|++++|+-|+|+|.+|+..|++|+++++||+||||+|||
T Consensus 190 ~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 190 YDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred chHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 44567888889999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchh
Q 006411 454 ----------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHES 517 (646)
Q Consensus 454 ----------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~ 517 (646)
-|++||+||.+|+.|+.++|++|||||||+|++ +|++.++|+.
T Consensus 270 ~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs---------------------~RG~s~EHEa 328 (491)
T KOG0738|consen 270 GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS---------------------QRGGSSEHEA 328 (491)
T ss_pred cCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHh---------------------cCCCccchhH
Confidence 899999999999999999999999999999999 8889999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCc---EEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQ---ILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------ 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~---VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------ 570 (646)
++|++++||.||||+....++ |+|++|||.||+||+|++|||.++||||+||.
T Consensus 329 SRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~ 408 (491)
T KOG0738|consen 329 SRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLED 408 (491)
T ss_pred HHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHH
Confidence 999999999999999875556 99999999999999999999999999999986
Q ss_pred ------CCcHHHHHHHHHHHhhhHHHHHHHhch--hhhhhccc-CCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 006411 571 ------GYSGSDMKNLVKEASMGPLREALRQGI--EITRLQKE-DMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQF 641 (646)
Q Consensus 571 ------GySGADL~~Lc~eAa~~Airr~l~~~~--~~~~~~~~-~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~f 641 (646)
||||+||.++|++|+|+++||.+.... ++..+.++ -..||+.+||+.|+.+++||++..++..||+|..+|
T Consensus 409 lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 409 LAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998765321 12222222 226899999999999999999999999999999999
Q ss_pred CC
Q 006411 642 GS 643 (646)
Q Consensus 642 g~ 643 (646)
|+
T Consensus 489 GS 490 (491)
T KOG0738|consen 489 GS 490 (491)
T ss_pred cC
Confidence 97
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-50 Score=424.52 Aligned_cols=252 Identities=33% Similarity=0.563 Sum_probs=221.5
Q ss_pred CcccccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhH
Q 006411 312 RGVRGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPE 384 (646)
Q Consensus 312 rg~~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 384 (646)
.-++|++++.++.++.++. ++++++.+.++.. +.++.. ++|.+++..+.+|++..+..-
T Consensus 72 pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V-------------- 137 (406)
T COG1222 72 PLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRV-------------- 137 (406)
T ss_pred CceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchh--------------
Confidence 4678999999998876543 5799999999966 899888 999999999999998744211
Q ss_pred HhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------
Q 006411 385 KLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------- 453 (646)
Q Consensus 385 ~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------- 453 (646)
...-..+.|+|||+|||||++++++|+|.|.+||++|++|..+| .||+||||||||
T Consensus 138 -------------~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkA 204 (406)
T COG1222 138 -------------SVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204 (406)
T ss_pred -------------heeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHH
Confidence 11125689999999999999999999999999999999999987 899999999999
Q ss_pred ---------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 454 ---------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
+||+.++||++|..|+.++||||||||||+|+. +|++...
T Consensus 205 VA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~----------------kR~d~~t--- 265 (406)
T COG1222 205 VANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA----------------KRFDSGT--- 265 (406)
T ss_pred HHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc----------------ccccCCC---
Confidence 999999999999999999999999999999998 3444322
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
+.....+|++.+||+|||||++ .++|-||||||||+.|||||+| ||||.|+||+||.
T Consensus 266 ~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv 344 (406)
T COG1222 266 SGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV 344 (406)
T ss_pred CchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc
Confidence 2334568999999999999998 7899999999999999999999 9999999999986
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
|||||||+++|.+|+|.|+|+. ...|+++||+.|++++--
T Consensus 345 d~e~la~~~~g~sGAdlkaictEAGm~AiR~~--------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 345 DLELLARLTEGFSGADLKAICTEAGMFAIRER--------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--------------cCeecHHHHHHHHHHHHh
Confidence 9999999999999999999983 356999999999999854
No 3
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-49 Score=399.86 Aligned_cols=250 Identities=37% Similarity=0.585 Sum_probs=226.4
Q ss_pred CcccccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhH
Q 006411 312 RGVRGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPE 384 (646)
Q Consensus 312 rg~~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 384 (646)
.-++|+|+++|++|.+++| ||++||.+++|.. ++|+.+ ++|.|++..|++|+|+.+ +++.||.
T Consensus 76 plvigqfle~vdqnt~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppead--ssi~ml~-------- 145 (408)
T KOG0727|consen 76 PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEAD--SSISMLG-------- 145 (408)
T ss_pred chHHHHHHHhhhccCceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCccc--ccccccC--------
Confidence 4689999999999999976 7999999999977 799988 999999999999999955 2444441
Q ss_pred HhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------
Q 006411 385 KLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------- 453 (646)
Q Consensus 385 ~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------- 453 (646)
.+++|+|+|.||||++-+|++|+|+|.+||.+.++|+.++ .||+||||||||
T Consensus 146 -----------------~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~ka 208 (408)
T KOG0727|consen 146 -----------------PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKA 208 (408)
T ss_pred -----------------CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHH
Confidence 3578999999999999999999999999999999999987 899999999999
Q ss_pred ---------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 454 ---------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
.||+.++||++|..|+.++|+||||||||+|+. |||+++.+.
T Consensus 209 va~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiat----------------krfdaqtga- 271 (408)
T KOG0727|consen 209 VANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT----------------KRFDAQTGA- 271 (408)
T ss_pred HhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh----------------hhccccccc-
Confidence 899999999999999999999999999999998 788886643
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
....+|++-+||++|||+++ ..+|-||+||||.+.|||||+| |+|+.|+||+||.
T Consensus 272 --drevqril~ellnqmdgfdq-~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~v 348 (408)
T KOG0727|consen 272 --DREVQRILIELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEV 348 (408)
T ss_pred --cHHHHHHHHHHHHhccCcCc-ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCccc
Confidence 34568999999999999998 6799999999999999999999 9999999999986
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
..||+||..+|++|.|.|+|+. ...|...||++|.+.+
T Consensus 349 dle~~v~rpdkis~adi~aicqeagm~avr~n--------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 349 DLEDLVARPDKISGADINAICQEAGMLAVREN--------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred CHHHHhcCccccchhhHHHHHHHHhHHHHHhc--------------ceeeeHHHHHHHHHhh
Confidence 6899999999999999999972 3568899999999875
No 4
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-48 Score=395.57 Aligned_cols=230 Identities=44% Similarity=0.791 Sum_probs=207.8
Q ss_pred hHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------
Q 006411 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------ 453 (646)
Q Consensus 392 ~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------ 453 (646)
.+...++..|+.++|+|.|+||+||+.+|+.|+|+|++|+++|++|.+.+.|++||||||||
T Consensus 114 KLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 114 KLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred HHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 45566788899999999999999999999999999999999999999999999999999999
Q ss_pred -------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 454 -------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 454 -------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
.||+|++|+.+|+.||.+.|+||||||||++++ .| +.++++.++|
T Consensus 194 FFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg---------------------~r-~enEseasRR 251 (439)
T KOG0739|consen 194 FFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCG---------------------SR-SENESEASRR 251 (439)
T ss_pred eEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---------------------CC-CCCchHHHHH
Confidence 999999999999999999999999999999987 44 6788889999
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------ 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------ 570 (646)
|+++||.||.|+...+++|+|+||||-||.||.|++|||+++||||+|+.
T Consensus 252 IKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kT 331 (439)
T KOG0739|consen 252 IKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKT 331 (439)
T ss_pred HHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhc
Confidence 99999999999998888999999999999999999999999999999975
Q ss_pred -CCcHHHHHHHHHHHhhhHHHHHHHhc--------h---hhhh---------------------hcccCCCCccHHHHHH
Q 006411 571 -GYSGSDMKNLVKEASMGPLREALRQG--------I---EITR---------------------LQKEDMQPVTLQDFEN 617 (646)
Q Consensus 571 -GySGADL~~Lc~eAa~~Airr~l~~~--------~---~~~~---------------------~~~~~~~~Vt~eDFe~ 617 (646)
||||+||.-+|++|.|+++|+..... . +... ..+.-.++|++.||+.
T Consensus 332 eGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k 411 (439)
T KOG0739|consen 332 EGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLK 411 (439)
T ss_pred CCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHH
Confidence 99999999999999999999864210 0 0000 0112346899999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCC
Q 006411 618 ALPQVRASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 618 AL~kvrPSvs~~dl~~ye~w~k~fg~ 643 (646)
+|.+++|+|+..||..+++|.+.||.
T Consensus 412 ~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 412 SLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999995
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-47 Score=418.29 Aligned_cols=256 Identities=36% Similarity=0.605 Sum_probs=224.6
Q ss_pred hhhhhhhhhhhhcccccceeecccccchhhhhhccCCCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHH
Q 006411 342 TIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKK 421 (646)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~ 421 (646)
..+......+|.|-+.++..|+.+.+....-+ ....+..++..+.|... ++++-+.|+|+|+||||++++|.
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----~~~~~~~A~~~i~psa~----Re~~ve~p~v~W~dIGGlE~lK~ 444 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR----TLEIFQEALMGIRPSAL----REILVEMPNVSWDDIGGLEELKR 444 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----hHHHHHHHHhcCCchhh----hheeccCCCCChhhccCHHHHHH
Confidence 44555667888888887776665554333221 33567778888877765 45567899999999999999999
Q ss_pred HHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------CchHHHHHHHHHHHhh
Q 006411 422 CVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVAS 469 (646)
Q Consensus 422 ~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vGesek~Vr~lF~~Ar 469 (646)
+|++.|+||+++|+.|.+++ .||+|||||||| +|++|+.|+.+|+.|+
T Consensus 445 elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 445 ELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKAR 524 (693)
T ss_pred HHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh
Confidence 99999999999999999998 999999999999 9999999999999999
Q ss_pred hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCC
Q 006411 470 CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549 (646)
Q Consensus 470 ~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd 549 (646)
..+||||||||||+++. +|+ +..++...|++++||++|||+.. ..+|+||||||||+
T Consensus 525 ~~aP~IiFfDEiDsi~~---------------------~R~-g~~~~v~~RVlsqLLtEmDG~e~-~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAG---------------------SRG-GSSSGVTDRVLSQLLTEMDGLEA-LKNVLVIAATNRPD 581 (693)
T ss_pred hcCCeEEehhhHHhHhh---------------------ccC-CCccchHHHHHHHHHHHcccccc-cCcEEEEeccCChh
Confidence 99999999999999998 665 33447889999999999999998 57899999999999
Q ss_pred cCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHHHHHhhhHHHHHHHhch
Q 006411 550 ELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVKEASMGPLREALRQGI 597 (646)
Q Consensus 550 ~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc~eAa~~Airr~l~~~~ 597 (646)
.||+|++| |||+.||||+||. |||||||..+|++|++.|+++.++
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~--- 658 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE--- 658 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---
Confidence 99999999 9999999999985 999999999999999999998643
Q ss_pred hhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 006411 598 EITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQ 640 (646)
Q Consensus 598 ~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~ 640 (646)
...|+.+||++|++.++||++..+++.|++|.+.
T Consensus 659 ---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 3668999999999999999999999999999764
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-46 Score=406.98 Aligned_cols=242 Identities=37% Similarity=0.592 Sum_probs=212.9
Q ss_pred hccCCCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCC
Q 006411 374 MLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGP 452 (646)
Q Consensus 374 ~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGP 452 (646)
-|+-...+|.++|..++|... .+.....|+|+|+||||+++++.+|..+|.+|+++|++|+.+| .+|.|||||||
T Consensus 478 ~L~i~~eDF~~Al~~iQPSak----REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GP 553 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAK----REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGP 553 (802)
T ss_pred cceecHHHHHHHHHhcCcchh----cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCC
Confidence 344445678889999998774 5777889999999999999999999999999999999999987 78999999999
Q ss_pred C-------------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhh
Q 006411 453 P-------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFC 501 (646)
Q Consensus 453 P-------------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~ 501 (646)
| +||+|+.||.+|..||..+||||||||||+|++
T Consensus 554 PGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p--------------- 618 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVP--------------- 618 (802)
T ss_pred CCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc---------------
Confidence 9 999999999999999999999999999999998
Q ss_pred hhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC---------
Q 006411 502 LKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------- 570 (646)
Q Consensus 502 ~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------- 570 (646)
+| +++..+.+.|++||||++|||+.. +.+|+|||||||||.||||+|| |||+.+||++|+.
T Consensus 619 ------~R-~~~~s~~s~RvvNqLLtElDGl~~-R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~ 690 (802)
T KOG0733|consen 619 ------RR-SDEGSSVSSRVVNQLLTELDGLEE-RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKT 690 (802)
T ss_pred ------cc-CCCCchhHHHHHHHHHHHhccccc-ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHH
Confidence 55 445577889999999999999987 6799999999999999999999 9999999999975
Q ss_pred -------------------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhh-hc-ccCCCCccHHHHHHHHhhcC
Q 006411 571 -------------------------GYSGSDMKNLVKEASMGPLREALRQGIEITR-LQ-KEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 571 -------------------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~-~~-~~~~~~Vt~eDFe~AL~kvr 623 (646)
|||||||..||++|++.|+++.+........ .. ......+++.||++|+++++
T Consensus 691 ~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 691 ITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 9999999999999999999997653211100 00 01134588999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q 006411 624 ASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 624 PSvs~~dl~~ye~w~k~fg 642 (646)
|||+..|-..|+..++.+|
T Consensus 771 pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 771 PSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred CCccHHHHHHHHHHhhhhc
Confidence 9999999999999999987
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=404.81 Aligned_cols=237 Identities=32% Similarity=0.566 Sum_probs=204.8
Q ss_pred hhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------
Q 006411 382 LPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------- 453 (646)
Q Consensus 382 ~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------- 453 (646)
+..++..++..+...+ ..++.|+|+|+||||++++|.+|.+.|.+||+||++|....++..||||||||
T Consensus 646 f~kals~~~~~fs~ai---GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 646 FDKALSRLQKEFSDAI---GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred HHHHHHHHHHhhhhhc---CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHH
Confidence 4445544444443322 36789999999999999999999999999999999999777888999999999
Q ss_pred -----------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 454 -----------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 454 -----------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
+|++|++||.+|+.||..+||||||||+|+|++ .|+
T Consensus 723 KAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP---------------------~RG 781 (953)
T KOG0736|consen 723 KAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAP---------------------NRG 781 (953)
T ss_pred HHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCc---------------------cCC
Confidence 999999999999999999999999999999999 565
Q ss_pred CCCCc-hhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC----------------
Q 006411 511 SDGEH-ESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS---------------- 570 (646)
Q Consensus 511 s~~~~-e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~---------------- 570 (646)
..+++ ..++||++|||.+|||+.. ....|+|||||||||.|||||+| |||+-+|++.++.
T Consensus 782 ~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk 861 (953)
T KOG0736|consen 782 RSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK 861 (953)
T ss_pred CCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc
Confidence 55544 5799999999999999986 57789999999999999999999 9999999999964
Q ss_pred ----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhh---hhcccCCCCccHHHHHHHHhhcCCCCCHHHH
Q 006411 571 ----------------GYSGSDMKNLVKEASMGPLREALRQGIEIT---RLQKEDMQPVTLQDFENALPQVRASVSLNEL 631 (646)
Q Consensus 571 ----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~---~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl 631 (646)
.||||||..||.+|.+.|++|.+......+ .........|+++||.+|+++++||+|..||
T Consensus 862 LdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL 941 (953)
T KOG0736|consen 862 LDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQEL 941 (953)
T ss_pred CCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHH
Confidence 899999999999999999999765422111 1122334579999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 006411 632 GIYEEWNKQFG 642 (646)
Q Consensus 632 ~~ye~w~k~fg 642 (646)
..||..+.+|.
T Consensus 942 ~~ye~vr~~fs 952 (953)
T KOG0736|consen 942 LRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHhhc
Confidence 99999999994
No 8
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-42 Score=370.98 Aligned_cols=239 Identities=59% Similarity=0.969 Sum_probs=220.2
Q ss_pred HHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------
Q 006411 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------- 453 (646)
Q Consensus 384 ~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------- 453 (646)
+.+++++......+.++|+...++|.|+||+|++.+|+.|.|+|+||+.+|++|.+++.|++|+||+|||
T Consensus 126 ~~~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~a 205 (428)
T KOG0740|consen 126 EKVKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKA 205 (428)
T ss_pred hhhccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHH
Confidence 4566777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 454 ---------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
+|++|++||++|..|+..+|+||||||||+++. +| ++
T Consensus 206 iAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls---------------------~R-s~ 263 (428)
T KOG0740|consen 206 IATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLS---------------------KR-SD 263 (428)
T ss_pred HHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHh---------------------hc-CC
Confidence 999999999999999999999999999999998 66 78
Q ss_pred CCchhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC---------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS--------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~--------------------- 570 (646)
.+++.++|+.++||.++++... ..++|+||||||+||.||+|++|||.+++|||+|++
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~ 343 (428)
T KOG0740|consen 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL 343 (428)
T ss_pred cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 8899999999999999999987 467999999999999999999999999999999986
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQ 640 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~ 640 (646)
||||+||.++|++|++.+++..... .....+..+..++++..||+.|++.++|+++...++.|++|+++
T Consensus 344 d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~-~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~ 422 (428)
T KOG0740|consen 344 DISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT-TDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKE 422 (428)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc-hhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhh
Confidence 9999999999999999999885432 12223455677899999999999999999999999999999999
Q ss_pred hCCCC
Q 006411 641 FGSLS 645 (646)
Q Consensus 641 fg~~~ 645 (646)
||+..
T Consensus 423 fg~~~ 427 (428)
T KOG0740|consen 423 FGSSE 427 (428)
T ss_pred hcccc
Confidence 99864
No 9
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-39 Score=343.64 Aligned_cols=225 Identities=42% Similarity=0.773 Sum_probs=197.1
Q ss_pred hhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCC----------------------
Q 006411 398 SNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPP---------------------- 453 (646)
Q Consensus 398 ~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPP---------------------- 453 (646)
+.-+....-.|+|+||||++.++++|+|.|++|+.+|++|.... .|++||||||||
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 33455677799999999999999999999999999999997443 899999999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
+||++|.++++|..|.+.+||||||||||+++. .| ...+|+.+..+++|
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~---------------------~R-~s~dHEa~a~mK~e 216 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLG---------------------QR-RSTDHEATAMMKNE 216 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHh---------------------hc-ccchHHHHHHHHHH
Confidence 899999999999999999999999999999998 67 67899999999999
Q ss_pred HHHHHcCCCCC-CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------CCc
Q 006411 525 FLIEMEGFDSG-SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------GYS 573 (646)
Q Consensus 525 LL~eLDGl~~~-~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------GyS 573 (646)
|+..|||+.++ ..+|+|+||||||.+||.|++||+.++++|++|+. |||
T Consensus 217 FM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 217 FMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYS 296 (386)
T ss_pred HHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCc
Confidence 99999999984 34799999999999999999999999999999975 999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhc--h-hhhh----hc-c------cCCCCccHHHHHHHHhhcCCCCCHHHH--HHHHHH
Q 006411 574 GSDMKNLVKEASMGPLREALRQG--I-EITR----LQ-K------EDMQPVTLQDFENALPQVRASVSLNEL--GIYEEW 637 (646)
Q Consensus 574 GADL~~Lc~eAa~~Airr~l~~~--~-~~~~----~~-~------~~~~~Vt~eDFe~AL~kvrPSvs~~dl--~~ye~w 637 (646)
|+||+++|+.|++.++|+.+.++ . +... .. . -..++++++||..|+.+|-++++.+.. ...+.|
T Consensus 297 GSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~ 376 (386)
T KOG0737|consen 297 GSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQW 376 (386)
T ss_pred HHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHH
Confidence 99999999999999999998774 0 0000 00 0 125899999999999999998766543 468899
Q ss_pred HHHhCCC
Q 006411 638 NKQFGSL 644 (646)
Q Consensus 638 ~k~fg~~ 644 (646)
++.||+.
T Consensus 377 ~~~~~e~ 383 (386)
T KOG0737|consen 377 NELYGEG 383 (386)
T ss_pred Hhhhccc
Confidence 9999864
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-40 Score=335.54 Aligned_cols=247 Identities=34% Similarity=0.527 Sum_probs=207.6
Q ss_pred cccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHhh
Q 006411 315 RGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLR 387 (646)
Q Consensus 315 ~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk 387 (646)
.|+.-+.|+.+++++. .+|+.|.+.+|+. +.+..+ .+|......|.+|.....
T Consensus 109 vg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~d-------------------- 168 (440)
T KOG0726|consen 109 VGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTD-------------------- 168 (440)
T ss_pred cccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCC--------------------
Confidence 5778888999998864 4799999999977 677777 555555555666643211
Q ss_pred hhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------
Q 006411 388 NLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------- 453 (646)
Q Consensus 388 ~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------- 453 (646)
| .++-.-+++.|.-+|.||||++.++++|+|.|.+||.||++|...+ .||+||+|||+|
T Consensus 169 ---p----mv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 169 ---P----MVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred ---c----cceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 0 0111124678999999999999999999999999999999999987 899999999999
Q ss_pred ------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 454 ------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 454 ------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
.|++.++||.+|..|..++|||+||||||++.. |||+. .+.++.
T Consensus 242 qTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt----------------KRyds--~Sgger 303 (440)
T KOG0726|consen 242 QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT----------------KRYDS--NSGGER 303 (440)
T ss_pred ccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc----------------ccccC--CCccHH
Confidence 789999999999999999999999999999998 44444 233343
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------------------
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS----------------------- 570 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~----------------------- 570 (646)
..+|..-+||+|+|||++ ...|-||+|||+.+.|||||+| |+|+.|+||+||+
T Consensus 304 -EiQrtmLELLNQldGFds-rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle 381 (440)
T KOG0726|consen 304 -EIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLE 381 (440)
T ss_pred -HHHHHHHHHHHhccCccc-cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHH
Confidence 346667799999999998 7789999999999999999999 9999999999986
Q ss_pred -------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 571 -------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 571 -------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
.+|||||+++|.+|.+.|+|+.- ..|+++||..|.+++
T Consensus 382 ~li~~kddlSGAdIkAictEaGllAlRerR--------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 382 ELIMTKDDLSGADIKAICTEAGLLALRERR--------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred HHhhcccccccccHHHHHHHHhHHHHHHHH--------------hhccHHHHHHHHHHH
Confidence 79999999999999999999853 348999999999886
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-38 Score=348.80 Aligned_cols=216 Identities=32% Similarity=0.642 Sum_probs=189.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...++|+|.||||++.+..+|.++++. +++|+.|..+| .||+||||||||
T Consensus 182 ~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733|consen 182 FPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh
Confidence 345589999999999999999999999 99999999987 899999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
.||+|+.||++|+.|+..+|||+||||||+|.+ +|.. ...+..+||+.|||+.||
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~p---------------------kRe~-aqreMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITP---------------------KREE-AQREMERRIVAQLLTSMD 318 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeEEEeeccccccc---------------------chhh-HHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999998 4533 445678999999999999
Q ss_pred CCCCC---CCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 531 GFDSG---SEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 531 Gl~~~---~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
++... ++.|+|||||||||.|||||+| |||+.|.+..|++ ||+||
T Consensus 319 ~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 319 ELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred cccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccch
Confidence 99763 4789999999999999999999 9999999999986 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchh---------h--------hh--h-----------------------------cccCC
Q 006411 576 DMKNLVKEASMGPLREALRQGIE---------I--------TR--L-----------------------------QKEDM 607 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~---------~--------~~--~-----------------------------~~~~~ 607 (646)
||.+||.+|++.||+|++++... . .. + +....
T Consensus 399 DL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~ 478 (802)
T KOG0733|consen 399 DLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEG 478 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhcc
Confidence 99999999999999998863210 0 00 0 00122
Q ss_pred CCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHHh
Q 006411 608 QPVTLQDFENALPQVRAS-----------VSLNELGIYEEWNKQF 641 (646)
Q Consensus 608 ~~Vt~eDFe~AL~kvrPS-----------vs~~dl~~ye~w~k~f 641 (646)
..|.++||+.|+.+++|| |+|+|++.+++.+.++
T Consensus 479 L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL 523 (802)
T KOG0733|consen 479 LSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLEL 523 (802)
T ss_pred ceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHH
Confidence 458999999999999976 8999999999988776
No 12
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.5e-37 Score=352.98 Aligned_cols=240 Identities=37% Similarity=0.648 Sum_probs=205.5
Q ss_pred CChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----
Q 006411 380 GELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----- 453 (646)
Q Consensus 380 ~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----- 453 (646)
.++..+++.++|.... ++..+.|+++|+||+|++.+|+.|++.+.+|+.++++|..++ .+|+||||||||
T Consensus 426 ~df~~Al~~v~ps~~~----~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT 501 (733)
T TIGR01243 426 KDFMEALKMVEPSAIR----EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKT 501 (733)
T ss_pred HHHHHHHhhccccccc----hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHH
Confidence 4456667777765532 344567899999999999999999999999999999999876 788999999999
Q ss_pred --------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcc
Q 006411 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYF 507 (646)
Q Consensus 454 --------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~ 507 (646)
+|++++.++.+|..|+..+||||||||||+|++
T Consensus 502 ~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~--------------------- 560 (733)
T TIGR01243 502 LLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAP--------------------- 560 (733)
T ss_pred HHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc---------------------
Confidence 789999999999999999999999999999998
Q ss_pred ccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC---------------
Q 006411 508 QRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------- 570 (646)
Q Consensus 508 ~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------- 570 (646)
.|+....+...++++++||.+|||+.. ..+|+||+|||+|+.||+|++| |||+.|+||+||.
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg~~~-~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDGIQE-LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhcccC-CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 554444455678999999999999987 5689999999999999999999 9999999999985
Q ss_pred ---------------CCcHHHHHHHHHHHhhhHHHHHHHhchhh--hhh--cccCCCCccHHHHHHHHhhcCCCCCHHHH
Q 006411 571 ---------------GYSGSDMKNLVKEASMGPLREALRQGIEI--TRL--QKEDMQPVTLQDFENALPQVRASVSLNEL 631 (646)
Q Consensus 571 ---------------GySGADL~~Lc~eAa~~Airr~l~~~~~~--~~~--~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl 631 (646)
||||+||.++|++|++.|+++.+...... ... .......|+++||+.|+++++||++.+++
T Consensus 640 ~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~ 719 (733)
T TIGR01243 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDM 719 (733)
T ss_pred CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999865432110 000 01123579999999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 006411 632 GIYEEWNKQFGSLS 645 (646)
Q Consensus 632 ~~ye~w~k~fg~~~ 645 (646)
..|++|.++|+.++
T Consensus 720 ~~~~~~~~~~~~~~ 733 (733)
T TIGR01243 720 LRYERLAKELKRLT 733 (733)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999999763
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=307.56 Aligned_cols=189 Identities=36% Similarity=0.626 Sum_probs=170.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
..+.|+-+|+-|||++.++++|+|.+.+|.+||++|..++ ..|+|+||||||
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 5678999999999999999999999999999999999887 668999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
.|++.++||.+|-.|+.++|+|||+||||+|++.|+ + ++.+..+..+|..-+||++|
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~----------------e---~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRV----------------E---SGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccc----------------c---CCCCccHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999998321 1 22333445678889999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
|||.. ..+|-||+||||.+-|||||+| |+|+.|+||+|++ |.|||++
T Consensus 279 dgfea-tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaev 357 (404)
T KOG0728|consen 279 DGFEA-TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEV 357 (404)
T ss_pred ccccc-ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchh
Confidence 99998 6799999999999999999999 9999999999986 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
+.+|.+|.|.|+|+. ...||++||+-|+.++--
T Consensus 358 k~vcteagm~alrer--------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 358 KGVCTEAGMYALRER--------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred hhhhhhhhHHHHHHh--------------hccccHHHHHHHHHHHHh
Confidence 999999999999984 246999999999998754
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-36 Score=324.70 Aligned_cols=180 Identities=37% Similarity=0.689 Sum_probs=164.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
..+|+|+||-|++++|++|.|+|.+ |+.|.-|..++ +.|+||||.|||
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3489999999999999999999988 99999999886 889999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+|.+.+.||++|+.|++.+||||||||||+++. +|.....+ ..++.+||||.+||||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~---------------------kR~~~~~~-y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGG---------------------KRNPSDQH-YAKQTLNQLLVEMDGF 434 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcc---------------------cCCccHHH-HHHHHHHHHHHHhcCc
Confidence 899999999999999999999999999999998 55443333 7899999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNL 580 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~L 580 (646)
.+ +++|+||||||+|+.||+||+| |||++|.||.||- ||+||||.+|
T Consensus 435 ~q-NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNl 513 (752)
T KOG0734|consen 435 KQ-NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANL 513 (752)
T ss_pred Cc-CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHH
Confidence 98 7899999999999999999999 9999999999985 9999999999
Q ss_pred HHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 581 VKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 581 c~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
+..|++.|..+ ....|+|.||+.|-.++
T Consensus 514 VNqAAlkAa~d--------------ga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 514 VNQAALKAAVD--------------GAEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHHHHHHHhc--------------CcccccHHHHhhhhhhe
Confidence 99999888654 23569999999999988
No 15
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=322.70 Aligned_cols=209 Identities=46% Similarity=0.794 Sum_probs=185.1
Q ss_pred ChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------
Q 006411 381 ELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------ 453 (646)
Q Consensus 381 ~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------ 453 (646)
++.+.++++.+. .++....|.++|+||+|++.+|+.+++.+.+|+.++++|...+ .+++|+||||||
T Consensus 218 ~~~~~l~~~~~~------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~ 291 (494)
T COG0464 218 DFEEALKKVLPS------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTL 291 (494)
T ss_pred HHHHHHHhcCcc------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHH
Confidence 344455555443 3566788999999999999999999999999999999999754 788999999999
Q ss_pred -------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccc
Q 006411 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508 (646)
Q Consensus 454 -------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~ 508 (646)
+|+++++|+.+|..|+..+||||||||||++++ .
T Consensus 292 lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~---------------------~ 350 (494)
T COG0464 292 LAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS---------------------G 350 (494)
T ss_pred HHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc---------------------c
Confidence 999999999999999999999999999999998 4
Q ss_pred cCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC----------------
Q 006411 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS---------------- 570 (646)
Q Consensus 509 R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~---------------- 570 (646)
|+ ...+....+++++||.+|||+.. ..+|+||+|||+||.||+|++| |||++|+||+||.
T Consensus 351 r~-~~~~~~~~r~~~~lL~~~d~~e~-~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~ 428 (494)
T COG0464 351 RG-PSEDGSGRRVVGQLLTELDGIEK-AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP 428 (494)
T ss_pred CC-CCCchHHHHHHHHHHHHhcCCCc-cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC
Confidence 43 33333447999999999999998 6689999999999999999999 9999999999985
Q ss_pred ----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHH
Q 006411 571 ----------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIY 634 (646)
Q Consensus 571 ----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~y 634 (646)
||+|+||..+|++|++.++++.. ...|+++||..|+++++||++ |
T Consensus 429 ~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------------~~~~~~~~~~~a~~~~~p~~~------~ 489 (494)
T COG0464 429 PLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------------RREVTLDDFLDALKKIKPSVT------Y 489 (494)
T ss_pred cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------cCCccHHHHHHHHHhcCCCCC------h
Confidence 89999999999999999998853 357999999999999999998 8
Q ss_pred HHH
Q 006411 635 EEW 637 (646)
Q Consensus 635 e~w 637 (646)
++|
T Consensus 490 ~~~ 492 (494)
T COG0464 490 EEW 492 (494)
T ss_pred hhc
Confidence 888
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-35 Score=299.00 Aligned_cols=190 Identities=34% Similarity=0.653 Sum_probs=171.0
Q ss_pred cccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC--------------------------
Q 006411 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------- 453 (646)
Q Consensus 401 i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------- 453 (646)
..++.|.-+|+||||++.++++|.|+|.+|++|++-|..++ .||+|||+||||
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 35889999999999999999999999999999999999987 899999999999
Q ss_pred -----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 -----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
.|++.+.||+.|..|+..+|+||||||+|+|+. ||++... .+ ....+|..-+||++
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt----------------KRfDSek--~G-DREVQRTMLELLNQ 301 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT----------------KRFDSEK--AG-DREVQRTMLELLNQ 301 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcc----------------ccccccc--cc-cHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 3443322 22 23457888899999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
||||.+ .++|-||+||||.+-|||||+| |+|+.|+||.|++ +|.|+.
T Consensus 302 LDGFss-~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQ 380 (424)
T KOG0652|consen 302 LDGFSS-DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQ 380 (424)
T ss_pred hcCCCC-ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchh
Confidence 999998 7899999999999999999999 9999999999986 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
.+++|-+|.|.|+|+. ...|+.+||..++..++.
T Consensus 381 cKAVcVEAGMiALRr~--------------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 381 CKAVCVEAGMIALRRG--------------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred heeeehhhhHHHHhcc--------------cccccHHHHHHHHHHHHH
Confidence 9999999999999982 356899999999988753
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=9.5e-35 Score=314.14 Aligned_cols=249 Identities=32% Similarity=0.538 Sum_probs=205.3
Q ss_pred ccccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHh
Q 006411 314 VRGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKL 386 (646)
Q Consensus 314 ~~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l 386 (646)
.+|++++.++.++.++. ++++++.+.++.. +.++.. .+|.+++..+.+|++....
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~------------------ 129 (398)
T PTZ00454 68 VIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADS------------------ 129 (398)
T ss_pred eEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccc------------------
Confidence 46788888877766542 5688888888755 666655 6677777777776654221
Q ss_pred hhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------
Q 006411 387 RNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------ 453 (646)
Q Consensus 387 k~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------ 453 (646)
.+....+.+.|+++|+||||++.+|++|++.|.+|+.+|++|..++ .||+||||||||
T Consensus 130 ---------~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 130 ---------SIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred ---------hhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 0011124568999999999999999999999999999999999887 788999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--C
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--D 512 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~ 512 (646)
.|++++.++.+|..|+..+||||||||||+++. +|.. .
T Consensus 201 ~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~---------------------~r~~~~~ 259 (398)
T PTZ00454 201 HHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---------------------KRFDAQT 259 (398)
T ss_pred HhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc---------------------ccccccC
Confidence 678889999999999999999999999999987 3311 1
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
+......+++.+||.+||++.. ..+|+||+|||+|+.||||++| |||+.|+||+|+.
T Consensus 260 ~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv 338 (398)
T PTZ00454 260 GADREVQRILLELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV 338 (398)
T ss_pred CccHHHHHHHHHHHHHhhccCC-CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc
Confidence 2233457889999999999987 5689999999999999999999 9999999999975
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
||||+||+++|++|++.|+++. ...|+++||+.|+.++...
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAGMQAVRKN--------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--------------CCccCHHHHHHHHHHHHhc
Confidence 9999999999999999999862 2579999999999998654
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-34 Score=290.73 Aligned_cols=187 Identities=34% Similarity=0.625 Sum_probs=168.2
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
..+.|+|+|+||||..++++.|+|.|.+||.+|+-|..++ .||+||||||||
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 5689999999999999999999999999999999999987 899999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
+||+.++||++|+.|+....|||||||||++.+. ||+. +.+.....+|..-+|++||
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaigga----------------rfdd---g~ggdnevqrtmleli~ql 308 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGA----------------RFDD---GAGGDNEVQRTMLELINQL 308 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCc----------------cccC---CCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999982 3322 2233345678889999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
||++. .++|-|++|||||+.|||||+| |+|+.++|.+||- .-+|++|
T Consensus 309 dgfdp-rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaei 387 (435)
T KOG0729|consen 309 DGFDP-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEI 387 (435)
T ss_pred cCCCC-CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHH
Confidence 99998 7899999999999999999999 9999999999984 6799999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
+.+|.+|.|.||+..- ...|-.||+.|+.++
T Consensus 388 rsvcteagmfairarr--------------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 388 RSVCTEAGMFAIRARR--------------KVATEKDFLDAVNKV 418 (435)
T ss_pred HHHHHHhhHHHHHHHh--------------hhhhHHHHHHHHHHH
Confidence 9999999999998631 346889999999987
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-34 Score=315.13 Aligned_cols=232 Identities=31% Similarity=0.580 Sum_probs=192.2
Q ss_pred CCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----
Q 006411 379 DGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---- 453 (646)
Q Consensus 379 ~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---- 453 (646)
.+.|.++|+.+-|...+.+. ..+..++.|+|||||.++|+.|++.++||-++|.+|..++ +.+.||||||||
T Consensus 638 ke~f~ksL~~F~P~aLR~ik---~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGK 714 (952)
T KOG0735|consen 638 KELFEKSLKDFVPLALRGIK---LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGK 714 (952)
T ss_pred HHHHHHHHHhcChHHhhhcc---ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcH
Confidence 35577788888777766554 2344459999999999999999999999999999999886 667999999999
Q ss_pred ---------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhc
Q 006411 454 ---------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFY 506 (646)
Q Consensus 454 ---------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~ 506 (646)
.|.+|.+||.+|..|+..+|||+||||.|+|++
T Consensus 715 T~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP-------------------- 774 (952)
T KOG0735|consen 715 TLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP-------------------- 774 (952)
T ss_pred HHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc--------------------
Confidence 899999999999999999999999999999999
Q ss_pred cccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------
Q 006411 507 FQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------- 570 (646)
Q Consensus 507 ~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------- 570 (646)
+| +......++|++||||++|||... -++|.|+|||.||+.|||||+| |||+.+++|+|++
T Consensus 775 -kR-GhDsTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 775 -KR-GHDSTGVTDRVVNQLLTELDGAEG-LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred -cc-CCCCCCchHHHHHHHHHhhccccc-cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc
Confidence 55 444556789999999999999988 6799999999999999999999 9999999999986
Q ss_pred ----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHH--hhcCCCCCHHHHH
Q 006411 571 ----------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENAL--PQVRASVSLNELG 632 (646)
Q Consensus 571 ----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL--~kvrPSvs~~dl~ 632 (646)
|||||||..||..|.+.|+++.+...... .....++...+.... .+.+||.+.-+-.
T Consensus 852 ~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~~-----~~~p~~~~~~~~si~~~~~~~~s~~~~~~~ 926 (952)
T KOG0735|consen 852 LKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDEE-----GVVPSIDDASLESIFSDSKRKPSRSALDNR 926 (952)
T ss_pred CCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCcc-----ccCCccchhhhhhhhhccCCCccccccchh
Confidence 99999999999999999999987653211 112224444444433 4677888777766
Q ss_pred HHHHHHHHh
Q 006411 633 IYEEWNKQF 641 (646)
Q Consensus 633 ~ye~w~k~f 641 (646)
.+.+...+|
T Consensus 927 ~~~~~~~~~ 935 (952)
T KOG0735|consen 927 KGQDVYSQF 935 (952)
T ss_pred hhhhHHHhh
Confidence 665555444
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.6e-33 Score=301.91 Aligned_cols=248 Identities=33% Similarity=0.504 Sum_probs=207.0
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHH
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEK 385 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 385 (646)
-.+|++++.++.++.+| .++++++.+.++.. +.++.+ .+|..++..+.+|++..+.
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~----------------- 167 (438)
T PTZ00361 105 LSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDP----------------- 167 (438)
T ss_pred cEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccch-----------------
Confidence 45789999999887664 26899999999865 777766 7788888877777643221
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------- 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------- 453 (646)
++ ...-+.+.|.++|+||+|++.++++|++++.+|+.+|++|..++ .||+||||||||
T Consensus 168 -------~~---~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraI 237 (438)
T PTZ00361 168 -------LV---SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAV 237 (438)
T ss_pred -------hh---hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 00 11124578999999999999999999999999999999999886 788999999999
Q ss_pred --------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--
Q 006411 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-- 511 (646)
Q Consensus 454 --------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-- 511 (646)
.|++++.++.+|..|+..+||||||||||+++. +|..
T Consensus 238 A~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---------------------kR~~~~ 296 (438)
T PTZ00361 238 ANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT---------------------KRYDAT 296 (438)
T ss_pred HHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc---------------------cCCCCC
Confidence 577888999999999999999999999999987 3321
Q ss_pred CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------
Q 006411 512 DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 512 ~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------- 570 (646)
.+......+++.+||.+|||+.. ..+|.||+|||+++.||+|++| |||+.|+||+||.
T Consensus 297 sgg~~e~qr~ll~LL~~Ldg~~~-~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d 375 (438)
T PTZ00361 297 SGGEKEIQRTMLELLNQLDGFDS-RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED 375 (438)
T ss_pred CcccHHHHHHHHHHHHHHhhhcc-cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC
Confidence 12222346778899999999976 5689999999999999999998 9999999999985
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
||||+||+++|++|++.|+++. ...|+.+||..|+.++.
T Consensus 376 vdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 376 VDLEEFIMAKDELSGADIKAICTEAGLLALRER--------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--------------CCccCHHHHHHHHHHHH
Confidence 9999999999999999999872 24699999999999984
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=305.16 Aligned_cols=184 Identities=36% Similarity=0.677 Sum_probs=164.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...+.|+|.||+|++++|++|.|.|.. |++|+.|..++ .+|+|+||+|||
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 345679999999999999999999988 99999999987 889999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~ 527 (646)
+|.+...||++|..||.++||||||||||+++. +|. ..+.+......+||||.
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~---------------------~r~G~~~~~~~~e~e~tlnQll~ 440 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR---------------------KRGGKGTGGGQDEREQTLNQLLV 440 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccc---------------------cccccccCCCChHHHHHHHHHHH
Confidence 666788999999999999999999999999998 442 22334455678999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------------------CCcH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------------GYSG 574 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------------GySG 574 (646)
+|||+.. ...|+||++||||+.||+|++| |||++|++++||. ||+|
T Consensus 441 emDgf~~-~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~g 519 (774)
T KOG0731|consen 441 EMDGFET-SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSG 519 (774)
T ss_pred HhcCCcC-CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcH
Confidence 9999998 5789999999999999999999 9999999999985 9999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
+||.++|.+|++.|+|+. ...|+..||+.|++++.
T Consensus 520 adl~n~~neaa~~a~r~~--------------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 520 ADLANLCNEAALLAARKG--------------LREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHhhhhHHHHHHHHhc--------------cCccchhhHHHHHHHHh
Confidence 999999999999999873 35689999999999554
No 22
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-31 Score=306.31 Aligned_cols=204 Identities=37% Similarity=0.662 Sum_probs=176.3
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
+.....|.|++|||++.++..|+|+|.+||.+|+.|..+. .||+||||||||
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr 335 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR 335 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhh
Confidence 4456689999999999999999999999999999999886 899999999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
+|+.|+.++.+|+.|++.+|+|||+||||-|++ .|.+..+ .....|+++
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlap---------------------vrSskqE-qih~SIvST 393 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAP---------------------VRSSKQE-QIHASIVST 393 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccc---------------------cccchHH-HhhhhHHHH
Confidence 999999999999999999999999999999998 4533322 233568999
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------------------C
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------------G 571 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------------G 571 (646)
||..|||+.+ .+.|+||||||||+.+|||++| |||+.+|||+|+. |
T Consensus 394 LLaLmdGlds-RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~g 472 (1080)
T KOG0732|consen 394 LLALMDGLDS-RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSG 472 (1080)
T ss_pred HHHhccCCCC-CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccc
Confidence 9999999998 7899999999999999999999 9999999999964 9
Q ss_pred CcHHHHHHHHHHHhhhHHHHHHHhchhhhhh--cccCCCCccHHHHHHHHhhcCCCCCH
Q 006411 572 YSGSDMKNLVKEASMGPLREALRQGIEITRL--QKEDMQPVTLQDFENALPQVRASVSL 628 (646)
Q Consensus 572 ySGADL~~Lc~eAa~~Airr~l~~~~~~~~~--~~~~~~~Vt~eDFe~AL~kvrPSvs~ 628 (646)
|.|+||+.||.+|++.++++...+.+..... .......|...||..|+.++.|+...
T Consensus 473 y~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 473 YGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred cchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 9999999999999999999866554322211 11122348999999999999987544
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=3.3e-30 Score=277.70 Aligned_cols=193 Identities=40% Similarity=0.700 Sum_probs=169.9
Q ss_pred cccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC--------------------------
Q 006411 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------- 453 (646)
Q Consensus 401 i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------- 453 (646)
...+.|+++|+||+|+++++++|++.+.+|+.+|++|..++ .||+||||||||
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 35678999999999999999999999999999999999887 789999999999
Q ss_pred -----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHH
Q 006411 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFL 526 (646)
Q Consensus 454 -----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL 526 (646)
.|++++.++.+|+.|+.++||||||||||+|+. .|.... ......+.+.+||
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~---------------------~r~~~~~~~~~~~~~~l~~lL 259 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA---------------------KRTDSGTSGDREVQRTLMQLL 259 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc---------------------ccccCCCCccHHHHHHHHHHH
Confidence 577889999999999999999999999999987 332222 1233567788999
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcH
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSG 574 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySG 574 (646)
.+||++.. ..+|+||+|||+++.||+|++| |||+.|+||+|+. ||+|
T Consensus 260 ~~ld~~~~-~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sg 338 (389)
T PRK03992 260 AEMDGFDP-RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASG 338 (389)
T ss_pred HhccccCC-CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCH
Confidence 99999986 5689999999999999999999 9999999999985 9999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHH
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLN 629 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~ 629 (646)
+||+.+|++|++.|+++ ....|+.+||.+|+.+++|+...+
T Consensus 339 adl~~l~~eA~~~a~~~--------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 339 ADLKAICTEAGMFAIRD--------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHHHHHHc--------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 99999999999999876 124699999999999999976543
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=291.20 Aligned_cols=182 Identities=37% Similarity=0.662 Sum_probs=165.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
....|+|.|++|.+++|++|.|.|.. |+.|.-|..++ .-|+||||+|||
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 36789999999999999999999987 99999998876 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC--CCCCchhhHHHHHHHHHHH
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK--SDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~--s~~~~e~s~rilneLL~eL 529 (646)
+|-+.+.||++|..|++++||||||||||++.. +|+ ..+.+..-.+++||||++|
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr---------------------~Rg~g~GggnderEQTLNQlLvEm 280 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR---------------------QRGAGLGGGNDEREQTLNQLLVEM 280 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhccc---------------------ccCCCCCCCchHHHHHHHHHHhhh
Confidence 888899999999999999999999999999987 443 2344555668999999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
||+.. +.+|+||+|||||+-|||||+| |||+.|.+++||. ||+|+||
T Consensus 281 DGF~~-~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL 359 (596)
T COG0465 281 DGFGG-NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADL 359 (596)
T ss_pred ccCCC-CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchH
Confidence 99996 6799999999999999999999 9999999999984 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
.++|.+|++.|.|+. ...|++.||+.|+.++
T Consensus 360 ~nl~NEAal~aar~n--------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 360 ANLLNEAALLAARRN--------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred hhhHHHHHHHHHHhc--------------CeeEeccchHHHHHHH
Confidence 999999999999872 3679999999999998
No 25
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.3e-29 Score=280.25 Aligned_cols=195 Identities=23% Similarity=0.366 Sum_probs=167.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
.++++|+||||++.+|+.|.+..... +..+...+ .+|+||||||||
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 46899999999999999998865432 22233344 678999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+|+++++++.+|+.|+..+||||||||||.++. .+...+++..+.+++++||..|+..
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~---------------------~~~~~~d~~~~~rvl~~lL~~l~~~ 357 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFS---------------------NSESKGDSGTTNRVLATFITWLSEK 357 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc---------------------cccCCCCchHHHHHHHHHHHHHhcC
Confidence 688999999999999999999999999999987 3334455567789999999999864
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------------------CCcHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------------------------GYSGSDMK 578 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------------------------GySGADL~ 578 (646)
..+|+||+|||+|+.||||++| |||+.|+|++|+. ||||+||+
T Consensus 358 ---~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~ 434 (489)
T CHL00195 358 ---KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE 434 (489)
T ss_pred ---CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH
Confidence 3579999999999999999999 9999999999975 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHh
Q 006411 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS--VSLNELGIYEEWNKQF 641 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS--vs~~dl~~ye~w~k~f 641 (646)
++|.+|+..|+.+ ..+++.+||+.|+++++|+ +..++++.+++|...-
T Consensus 435 ~lv~eA~~~A~~~---------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 435 QSIIEAMYIAFYE---------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHHHHc---------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 9999999888653 2568999999999999997 4778999999998753
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=7.6e-30 Score=259.73 Aligned_cols=184 Identities=29% Similarity=0.535 Sum_probs=159.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------ 453 (646)
..++++|+||+|.+++|+..+-++.+ |..|+.|..| .|+.||+||||
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 35789999999999999998877776 8999988765 58999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+|++.++|+.+|+.|++.+||||||||+|+|+- .|+=..-......++|.||++|||+
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL---------------------dRryQelRGDVsEiVNALLTelDgi 249 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIAL---------------------DRRYQELRGDVSEIVNALLTELDGI 249 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh---------------------hhhHHHhcccHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999987 3322222334567999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------CCcHHHHH-HHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------GYSGSDMK-NLV 581 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------GySGADL~-~Lc 581 (646)
.+ +++|+.|+|||+|+.||+|++.||...|+|.+|+. |+||.||+ .++
T Consensus 250 ~e-neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 250 KE-NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred cc-CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHH
Confidence 97 78999999999999999999999999999999986 99999998 466
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCC
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASV 626 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSv 626 (646)
+.|...||.+. ...|+.+||+.|+++.+++-
T Consensus 329 K~aLh~Ai~ed--------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 329 KTALHRAIAED--------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred HHHHHHHHHhc--------------hhhhhHHHHHHHHHhhcccc
Confidence 77777777652 24589999999999877653
No 27
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=3.9e-29 Score=277.29 Aligned_cols=151 Identities=32% Similarity=0.662 Sum_probs=133.4
Q ss_pred hhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------
Q 006411 398 SNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------- 453 (646)
Q Consensus 398 ~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------- 453 (646)
...+..+.|+++|+||||++.+++.|++.|.+|+.+|++|..++ .||+|+||||||
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 34456789999999999999999999999999999999999876 788999999999
Q ss_pred ------------------CchHHHHHHHHHHHhhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC
Q 006411 454 ------------------IGEGEKLVRALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS 511 (646)
Q Consensus 454 ------------------vGesek~Vr~lF~~Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s 511 (646)
.|++++.++.+|+.|+.. .||||||||||+|+. .|+.
T Consensus 249 ~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~---------------------~R~~ 307 (512)
T TIGR03689 249 GDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR---------------------TRGS 307 (512)
T ss_pred CCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc---------------------ccCC
Confidence 356778899999999865 699999999999997 4544
Q ss_pred CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC
Q 006411 512 DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS 570 (646)
Q Consensus 512 ~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~ 570 (646)
...++..++++++||++|||+.. ..+|+||+|||+|+.||||++| |||++|+|++|+.
T Consensus 308 ~~s~d~e~~il~~LL~~LDgl~~-~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 308 GVSSDVETTVVPQLLSELDGVES-LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CccchHHHHHHHHHHHHhccccc-CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 44444567899999999999987 5689999999999999999999 9999999999985
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.8e-30 Score=264.04 Aligned_cols=185 Identities=35% Similarity=0.628 Sum_probs=164.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
....+++|+.|+|+..+..+++|.|.+|+.+|++|...+ .||+|+||||||
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344579999999999999999999999999999999875 899999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~e 528 (646)
.||+.++||+.|..|+.+.||||||||||++++ .+.+. ......++.+.+||++
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigG---------------------Rr~se~Ts~dreiqrTLMeLlnq 262 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGG---------------------RRFSEGTSSDREIQRTLMELLNQ 262 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhcc---------------------EEeccccchhHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 33222 2234567888999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
|||++. ..+|-+|+|||+|+.|||||+| |+|+.+++|+|++ ||.|+|
T Consensus 263 mdgfd~-l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad 341 (388)
T KOG0651|consen 263 MDGFDT-LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGAD 341 (388)
T ss_pred hccchh-cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHH
Confidence 999998 6799999999999999999999 9999999999986 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
+++.|++|.+.++++.- ..+-++||..++.++.
T Consensus 342 ~rn~~tEag~Fa~~~~~--------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 342 LRNVCTEAGMFAIPEER--------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred Hhhhcccccccccchhh--------------HHHhHHHHHHHHHHHH
Confidence 99999999999987631 2366899999988763
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-29 Score=277.66 Aligned_cols=192 Identities=40% Similarity=0.700 Sum_probs=175.3
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------- 453 (646)
++++ +++||+......+++.|.+|+.+|.+|...+ .||+|+|+||||
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 7788 9999999999999999999999999999887 889999999999
Q ss_pred CchHHHHHHHHHHHhhhcC-CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 IGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
.||+++++|.+|+.|.+++ |+||||||||+|++ +|..... ..+|++.+|++.|||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p---------------------~r~~~~~--~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP---------------------KREGADD--VESRVVSQLLTLLDGL 315 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC---------------------cccccch--HHHHHHHHHHHHHhhC
Confidence 8999999999999999999 99999999999998 4433222 5789999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh-ccccEEEeCCCCC------------------------------CCcHHHHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR-RLTKRLYIPLPSS------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR-RFDr~I~IplPd~------------------------------GySGADL~~Lc 581 (646)
.. ..+|+||+|||+|+.|||+++| |||+.++|..|+. ||+|+||..+|
T Consensus 316 ~~-~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~ 394 (693)
T KOG0730|consen 316 KP-DAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALC 394 (693)
T ss_pred cC-cCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHH
Confidence 96 6789999999999999999999 9999999999985 99999999999
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHHh
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS-----------VSLNELGIYEEWNKQF 641 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS-----------vs~~dl~~ye~w~k~f 641 (646)
++|++.++++ ++++|..|+..++|| |+|+||+++|+.+.+.
T Consensus 395 ~ea~~~~~r~-------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 395 REASLQATRR-------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHhhh-------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999987 568888888888865 8999999999887653
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=3.2e-28 Score=259.12 Aligned_cols=185 Identities=41% Similarity=0.739 Sum_probs=162.2
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
..+.|.++|+||+|++++++.|++.+.+|+.+|++|..++ .+|+|+||||||
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 4578999999999999999999999999999999999876 788999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL~ 527 (646)
.|++...++.+|+.|+..+|+||||||||.++. .+.... ......+.+.++|.
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~---------------------~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA---------------------KRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc---------------------ccccCCCCccHHHHHHHHHHHH
Confidence 567778899999999999999999999999987 332211 12234577889999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
++|++.. ..+|+||+|||+++.||++++| |||+.|+|++|+. ||+|+
T Consensus 252 ~ld~~~~-~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~ 330 (364)
T TIGR01242 252 ELDGFDP-RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGA 330 (364)
T ss_pred HhhCCCC-CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHH
Confidence 9999876 4689999999999999999999 9999999999974 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
||+++|++|++.|+++. ...|+.+||+.|++++
T Consensus 331 dl~~l~~~A~~~a~~~~--------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 331 DLKAICTEAGMFAIREE--------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHHHHHhC--------------CCccCHHHHHHHHHHh
Confidence 99999999999998862 3569999999999876
No 31
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=4.8e-28 Score=267.72 Aligned_cols=186 Identities=38% Similarity=0.676 Sum_probs=162.1
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
....|+++|+||+|++++|++|++.+.+ +.+++.|...+ .+|+|+||||||
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3557899999999999999999998877 89999998765 778999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~ 527 (646)
.|++++.++.+|+.|+..+||||||||||+|+. .+.. .+.+....+++++||.
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~---------------------~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR---------------------QRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---------------------ccccCcCCccHHHHHHHHHHHh
Confidence 466788999999999999999999999999987 3322 2233455689999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
+||++.. ..+|+||+|||+|+.||||++| |||+.|+|++|+. ||||+
T Consensus 184 ~~d~~~~-~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 184 EMDGFGT-NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhccccC-CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHH
Confidence 9999977 5689999999999999999999 9999999999985 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
||..+|++|++.++++ ...+|+.+||+.|+.++.+
T Consensus 263 dl~~l~~eA~~~a~~~--------------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 263 DLANLLNEAALLAARK--------------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHHHHHc--------------CCCCCCHHHHHHHHHHHhc
Confidence 9999999999888764 2357999999999998854
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-27 Score=255.48 Aligned_cols=210 Identities=31% Similarity=0.487 Sum_probs=173.6
Q ss_pred CCCCccccc--ccChHHHHHHH-HHHHHhhccCccccccCC-CCCccccccCCC--------------------------
Q 006411 404 RDPHVRWDD--IAGLEHAKKCV-MEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdD--IgGle~~K~~L-~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------- 453 (646)
..|+..|++ ||||+.--..| +++...-+..|++...++ ...+||||||||
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 367777775 78998877665 556666677788888887 567999999999
Q ss_pred ------CchHHHHHHHHHHHhhhc--------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC-CCchhh
Q 006411 454 ------IGEGEKLVRALFGVASCR--------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD-GEHESS 518 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~--------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~-~~~e~s 518 (646)
+|++|.+||.+|..|... .--||+|||||+||. +|++. +.....
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK---------------------qRGS~~g~TGVh 350 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK---------------------QRGSMAGSTGVH 350 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH---------------------hcCCCCCCCCcc
Confidence 999999999999999543 234999999999998 55543 335567
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------------
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------- 570 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------- 570 (646)
+.++||||..|||+++ -.+|+|||.|||+|.||+||+| ||.-.++|.+||+
T Consensus 351 D~VVNQLLsKmDGVeq-LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl 429 (744)
T KOG0741|consen 351 DTVVNQLLSKMDGVEQ-LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDL 429 (744)
T ss_pred HHHHHHHHHhcccHHh-hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCH
Confidence 8899999999999998 5689999999999999999999 9999999999997
Q ss_pred --------CCcHHHHHHHHHHHhhhHHHHHHHhchh-hhhhcccCCCCccHHHHHHHHhhcCCC--CCHHHHHHHH
Q 006411 571 --------GYSGSDMKNLVKEASMGPLREALRQGIE-ITRLQKEDMQPVTLQDFENALPQVRAS--VSLNELGIYE 635 (646)
Q Consensus 571 --------GySGADL~~Lc~eAa~~Airr~l~~~~~-~~~~~~~~~~~Vt~eDFe~AL~kvrPS--vs~~dl~~ye 635 (646)
.||||+|+.||+.|...|+.|.+.-+.. ...........|++.||..||..++|+ ++.++++.|.
T Consensus 430 ~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 430 KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 8999999999999999999997755421 111223345679999999999999998 5788888776
No 33
>CHL00176 ftsH cell division protein; Validated
Probab=99.93 E-value=1.6e-25 Score=254.76 Aligned_cols=183 Identities=36% Similarity=0.651 Sum_probs=158.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...+.++|+||+|++++|++|.+.+.+ +..++.|...+ .+|+||||||||
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 345689999999999999999998866 88999988776 778999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~e 528 (646)
.|.+.+.++.+|+.|+..+||||||||||+++. .|+. .+.+.....++++||.+
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---------------------~r~~~~~~~~~e~~~~L~~LL~~ 312 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR---------------------QRGAGIGGGNDEREQTLNQLLTE 312 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh---------------------cccCCCCCCcHHHHHHHHHHHhh
Confidence 344667889999999999999999999999987 3322 23344557889999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
|||+.. ..+|+||+|||+|+.||+|++| |||++|+|++|+. ||+|+|
T Consensus 313 ~dg~~~-~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaD 391 (638)
T CHL00176 313 MDGFKG-NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGAD 391 (638)
T ss_pred hccccC-CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHH
Confidence 999987 5689999999999999999999 9999999999974 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
|+++|++|++.++++ ....|+++||+.|+.++
T Consensus 392 L~~lvneAal~a~r~--------------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 392 LANLLNEAAILTARR--------------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHHHHHHh--------------CCCCcCHHHHHHHHHHH
Confidence 999999999888765 23569999999999987
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=2.1e-25 Score=257.29 Aligned_cols=212 Identities=37% Similarity=0.669 Sum_probs=176.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..++++|+||+|++.+++.|++++.+|+.+|++|..++ .+++||||||||
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 34789999999999999999999999999999999887 788999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|+++..++.+|+.|...+|+||||||||.++. ++.. ...+...+++++|+..||+
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~---------------------~r~~-~~~~~~~~~~~~Ll~~ld~ 308 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAP---------------------KREE-VTGEVEKRVVAQLLTLMDG 308 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---------------------cccC-CcchHHHHHHHHHHHHhhc
Confidence 567888999999999999999999999999987 4422 2233457899999999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHH
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKN 579 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~ 579 (646)
+.. ...|+||+|||+|+.||++++| ||++.|++++|+. ||+|+||..
T Consensus 309 l~~-~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 309 LKG-RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred ccc-CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 976 5689999999999999999999 9999999999974 999999999
Q ss_pred HHHHHhhhHHHHHHHhchh---hhhh--cccCCCCccHHHHHHHHhhcCCCC-----------CHHHHHHHHHHH
Q 006411 580 LVKEASMGPLREALRQGIE---ITRL--QKEDMQPVTLQDFENALPQVRASV-----------SLNELGIYEEWN 638 (646)
Q Consensus 580 Lc~eAa~~Airr~l~~~~~---~~~~--~~~~~~~Vt~eDFe~AL~kvrPSv-----------s~~dl~~ye~w~ 638 (646)
+|++|++.++++.+..+.. ...+ .......++++||..|+..++|+. +|+++.+++..+
T Consensus 388 l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k 462 (733)
T TIGR01243 388 LAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVK 462 (733)
T ss_pred HHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHH
Confidence 9999999999987653210 0001 112334689999999999998873 566666555443
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.92 E-value=5.7e-25 Score=250.77 Aligned_cols=184 Identities=37% Similarity=0.647 Sum_probs=159.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
....+|+||+|++.+++.|.+.+.+ +..++.|...+ ..|+||||+|||
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 4568899999999999999999987 56677776554 667999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHHc
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eLD 530 (646)
.|.+...++.+|..|+..+||||||||||+++. +|.. .+.+....+++++||.+||
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~---------------------~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---------------------QRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh---------------------ccCCCCCCCchHHHHHHHHHHHhhh
Confidence 466778999999999999999999999999987 3432 2334456789999999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMK 578 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~ 578 (646)
|+.. ..+|+||+|||+|+.||+|++| |||++|+|++||. ||||+||.
T Consensus 284 g~~~-~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccC-CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH
Confidence 9987 6789999999999999999999 9999999999984 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
++|++|+..|+++ ....|++.||+.|+.++.+.
T Consensus 363 ~l~~eAa~~a~r~--------------~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 363 NLVNEAALFAARG--------------NKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHc--------------CCCcccHHHHHHHHHHHhcc
Confidence 9999999998875 23569999999999988664
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.90 E-value=7.7e-24 Score=255.30 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC--CCC
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS--GSE 537 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~--~~~ 537 (646)
.|+.+|+.|++++||||||||||+|+. .. .....+++||++|||... ...
T Consensus 1720 rIr~lFelARk~SPCIIFIDEIDaL~~---------------------~d-------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1720 YITLQFELAKAMSPCIIWIPNIHDLNV---------------------NE-------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred HHHHHHHHHHHCCCeEEEEEchhhcCC---------------------Cc-------cceehHHHHHHHhccccccCCCC
Confidence 389999999999999999999999986 21 112348999999999752 356
Q ss_pred cEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC---------------------------------CCcHHHHHHHHH
Q 006411 538 QILLVGATNRPQELDEAARR--RLTKRLYIPLPSS---------------------------------GYSGSDMKNLVK 582 (646)
Q Consensus 538 ~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~---------------------------------GySGADL~~Lc~ 582 (646)
+|+||||||+|+.|||||+| |||+.|+|++|+. |||||||++||.
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 89999999999999999999 9999999999864 999999999999
Q ss_pred HHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 583 eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
+|++.|+++ ....|+.+||..|+.++.
T Consensus 1852 EAaliAirq--------------~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1852 EALSISITQ--------------KKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHc--------------CCCccCHHHHHHHHHHHH
Confidence 999999986 235688999999998775
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.83 E-value=1.4e-20 Score=201.18 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=113.1
Q ss_pred Ccccccc-cChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------------C
Q 006411 407 HVRWDDI-AGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------------------I 454 (646)
Q Consensus 407 ~VsfdDI-gGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------------------------------v 454 (646)
..+|+++ +|+.-.+.-+...+...-+.. +......+|+|+|||||| +
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~-l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNF-LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhh-hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4677888 777766666655554433221 111223789999999999 9
Q ss_pred chHHHHHHHHHHHhhhc-----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH-HHHHHH
Q 006411 455 GEGEKLVRALFGVASCR-----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK-TQFLIE 528 (646)
Q Consensus 455 Gesek~Vr~lF~~Ar~~-----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril-neLL~e 528 (646)
||+|++||.+|..|+.. +||||||||||++++ +|+. ..+....+++ .+||++
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g---------------------~r~~-~~~tv~~qiV~~tLLnl 247 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG---------------------RFGT-TQYTVNNQMVNGTLMNI 247 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC---------------------CCCC-CCcchHHHHHHHHHHHH
Confidence 99999999999999864 699999999999998 5542 3334444555 899999
Q ss_pred HcCCC-----------CCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------CCcHHHHHHHH
Q 006411 529 MEGFD-----------SGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------GYSGSDMKNLV 581 (646)
Q Consensus 529 LDGl~-----------~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------GySGADL~~Lc 581 (646)
||+.. ....+|+||+|||+|+.|||||+| |||+.| .+||. +.+..|+..|+
T Consensus 248 ~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv 325 (413)
T PLN00020 248 ADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLV 325 (413)
T ss_pred hcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 98741 235679999999999999999999 999975 57875 55555555555
Q ss_pred HHH
Q 006411 582 KEA 584 (646)
Q Consensus 582 ~eA 584 (646)
..-
T Consensus 326 ~~f 328 (413)
T PLN00020 326 DTF 328 (413)
T ss_pred HcC
Confidence 443
No 38
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.4e-15 Score=165.23 Aligned_cols=146 Identities=20% Similarity=0.309 Sum_probs=115.1
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCC-ccccccCCCCchHHHHHHHHHHHhh----------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPG-KGLLLFGPPIGEGEKLVRALFGVAS---------------- 469 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~Pp-rGVLLyGPPvGesek~Vr~lF~~Ar---------------- 469 (646)
+-+|+.|+--.+.|+.|.+.+...++..+.|+..|.|+ ||+||||||+.+...+|.++-....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~d 276 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSD 276 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHH
Confidence 38999999999999999999999999999999999776 8999999996666777766633221
Q ss_pred -------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCc-hhhHHHHHHHHHHHcCCCCCC-Cc
Q 006411 470 -------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEH-ESSRRLKTQFLIEMEGFDSGS-EQ 538 (646)
Q Consensus 470 -------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~-e~s~rilneLL~eLDGl~~~~-~~ 538 (646)
...-|||+|++||+-+.- +. ++.. ...+ ..+...++.||+.+||+++.. +-
T Consensus 277 Lr~LL~~t~~kSIivIEDIDcs~~l--------------~~----~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~E 338 (457)
T KOG0743|consen 277 LRHLLLATPNKSILLIEDIDCSFDL--------------RE----RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDE 338 (457)
T ss_pred HHHHHHhCCCCcEEEEeeccccccc--------------cc----ccccccccccCCcceeehHHhhhhhccccccCCCc
Confidence 125789999999987651 00 1111 1111 134567899999999999833 34
Q ss_pred EEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC
Q 006411 539 ILLVGATNRPQELDEAARR--RLTKRLYIPLPSS 570 (646)
Q Consensus 539 VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~ 570 (646)
-+||+|||+++.|||||+| |+|.+||++.++.
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf 372 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTF 372 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCH
Confidence 5788999999999999999 9999999999875
No 39
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.4e-14 Score=158.50 Aligned_cols=180 Identities=42% Similarity=0.690 Sum_probs=152.2
Q ss_pred hhccCccccccCC-CCCccccccCCC------------------------------CchHHHHHHHHHHHhhhcCCeeee
Q 006411 429 WPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------IGEGEKLVRALFGVASCRQPAVIF 477 (646)
Q Consensus 429 lPL~~pelf~~~~-~PprGVLLyGPP------------------------------vGesek~Vr~lF~~Ar~~aPsIIF 477 (646)
+|+.+++.|...+ .|++|+++|||| .|+++..++.+|..|+..+|+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 5778888888775 788999999999 567788999999999999999999
Q ss_pred ehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh
Q 006411 478 VDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR 557 (646)
Q Consensus 478 IDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR 557 (646)
+||+|.+++ .+.. .......+++.+|+..||++. ... |+++++||+++.+|+++++
T Consensus 82 ~d~~~~~~~---------------------~~~~-~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~ 137 (494)
T COG0464 82 IDEIDALAP---------------------KRSS-DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRR 137 (494)
T ss_pred echhhhccc---------------------Cccc-cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhC
Confidence 999999998 4433 444567899999999999999 466 9999999999999999999
Q ss_pred --ccccEEEeCCCCC------------------------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhccc
Q 006411 558 --RLTKRLYIPLPSS------------------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKE 605 (646)
Q Consensus 558 --RFDr~I~IplPd~------------------------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~ 605 (646)
||++.++++.|+. ||+++|+..+|+++.+.++++.+ ....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------~~~~ 209 (494)
T COG0464 138 PGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------DLVG 209 (494)
T ss_pred ccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------ccCc
Confidence 9999999999975 89999999999999999998853 0112
Q ss_pred CCCCccHHHHHHHHhhcCC---------CCCHHHHHHHHHHHHH
Q 006411 606 DMQPVTLQDFENALPQVRA---------SVSLNELGIYEEWNKQ 640 (646)
Q Consensus 606 ~~~~Vt~eDFe~AL~kvrP---------Svs~~dl~~ye~w~k~ 640 (646)
....++.+||..+++++.| .++|.++++++.-+++
T Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~ 253 (494)
T COG0464 210 EYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEE 253 (494)
T ss_pred ccccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHH
Confidence 3356899999999999866 4788888766655443
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=3.3e-14 Score=127.08 Aligned_cols=92 Identities=29% Similarity=0.547 Sum_probs=80.5
Q ss_pred CchHHHHHHHHHHHhhhcC-CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 IGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
.++.++.++.+|..|+... ||||||||+|.++. .. ..........++++|+..|+..
T Consensus 39 ~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~---------------------~~-~~~~~~~~~~~~~~L~~~l~~~ 96 (132)
T PF00004_consen 39 AGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFP---------------------KS-QPSSSSFEQRLLNQLLSLLDNP 96 (132)
T ss_dssp TTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSH---------------------HC-STSSSHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccceeeeeccchhccc---------------------cc-ccccccccccccceeeeccccc
Confidence 6788999999999999888 99999999999998 33 3334556788999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHH-hccccEEEeCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAAR-RRLTKRLYIPL 567 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALl-RRFDr~I~Ipl 567 (646)
.....+++||+|||.++.||++++ +||+++|++|+
T Consensus 97 ~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 97 SSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp TTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 886578999999999999999999 89999999985
No 41
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.2e-13 Score=143.41 Aligned_cols=142 Identities=20% Similarity=0.333 Sum_probs=114.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccc--cCCCCCccccccCCC----------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~--~~~~PprGVLLyGPP---------------------------------- 453 (646)
|+.++--..+|+.|..++..-+...+... .+....|=|||||||
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 67777777899999999888776555433 234556889999999
Q ss_pred ------CchHHHHHHHHHHHhhhc---CCe--eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCR---QPA--VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~---aPs--IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
++|+.|+|..+|+..... ..+ .++|||+++|+..| .. -.+..+....-|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR--------------~s----~~S~~EpsDaIRvV 282 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAAR--------------TS----ASSRNEPSDAIRVV 282 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHH--------------Hh----hhcCCCCchHHHHH
Confidence 899999999999977543 233 45699999999821 10 01334555677999
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|.+|+|||.++. ..+|++++|+|-.+.||.|+..|-|-+.||+.|+.
T Consensus 283 NalLTQlDrlK~-~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 283 NALLTQLDRLKR-YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTA 329 (423)
T ss_pred HHHHHHHHHhcc-CCCEEEEeccchHHHHHHHhhhHhhheeecCCccH
Confidence 999999999998 78999999999999999999999999999999985
No 42
>CHL00181 cbbX CbbX; Provisional
Probab=99.43 E-value=9.5e-13 Score=137.55 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=106.0
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCcc--ccccCCCC--------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKG--LLLFGPPI-------------------------------- 454 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprG--VLLyGPPv-------------------------------- 454 (646)
.+++|++++|++|++++.+ +..++++...+ .+..| +||+|||+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 5899999999999999988 43455555443 22234 89999992
Q ss_pred ------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 455 ------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 455 ------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
|+++..++.+|+.| .+.||||||+|.|.. .+ ........+...|+..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~---------------------~~---~~~~~~~e~~~~L~~~ 154 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYK---------------------PD---NERDYGSEAIEILLQV 154 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhcc---------------------CC---CccchHHHHHHHHHHH
Confidence 22233334444443 468999999999865 22 1222346778899999
Q ss_pred HcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC---------------------------------
Q 006411 529 MEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS--------------------------------- 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~--------------------------------- 570 (646)
|+... .+++||+|++... .++|++++||+.+|+|+.++.
T Consensus 155 me~~~---~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~ 231 (287)
T CHL00181 155 MENQR---DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKR 231 (287)
T ss_pred HhcCC---CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 98643 4688888886422 346999999999999999974
Q ss_pred ----CCc-HHHHHHHHHHHhhhHHHHHHHh
Q 006411 571 ----GYS-GSDMKNLVKEASMGPLREALRQ 595 (646)
Q Consensus 571 ----GyS-GADL~~Lc~eAa~~Airr~l~~ 595 (646)
.|. +.+++++++.|......|.+.+
T Consensus 232 ~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 232 MEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 233 6777777777776666665543
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.5e-12 Score=140.37 Aligned_cols=139 Identities=25% Similarity=0.395 Sum_probs=108.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------ 453 (646)
..+.-.+++|+--..++..|....+..- +... ...|.+.||+||||
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTa-NTK~---h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATA-NTKK---HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhc-cccc---ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 3444558999988888888888766522 2221 23567999999999
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+.++-..|+.+|+.|++. ..-++||||.|+++. .|.....++..+..+|.||-..-.
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc---------------------eRnktymSEaqRsaLNAlLfRTGd- 481 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC---------------------ERNKTYMSEAQRSALNALLFRTGD- 481 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHH---------------------HhchhhhcHHHHHHHHHHHHHhcc-
Confidence 445667899999999765 567899999999987 666666777888899998854322
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....|+++.|||+|.+||.|+-.|||..|+||+|..
T Consensus 482 --qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGe 517 (630)
T KOG0742|consen 482 --QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGE 517 (630)
T ss_pred --cccceEEEeccCCccchhHHHHhhhhheeecCCCCh
Confidence 235688889999999999999999999999999954
No 44
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.29 E-value=2.4e-11 Score=126.70 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=91.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC----CCCccccccCCCCch------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR----SPGKGLLLFGPPIGE------------------------------ 456 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~----~PprGVLLyGPPvGe------------------------------ 456 (646)
.+++|++++|+.|.+.+.+ +..++.+...+ .|..++||+|||+.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999999988 55666665444 244589999999222
Q ss_pred --------HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 457 --------GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 457 --------sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
++..++.+|+.| .++||||||||.|.. .+ .+......+.+.|+..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~---------------------~~---~~~~~~~~~~~~Ll~~ 153 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYR---------------------PD---NERDYGQEAIEILLQV 153 (284)
T ss_pred HhHhhcccchHHHHHHHHHc---cCcEEEEechhhhcc---------------------CC---CccchHHHHHHHHHHH
Confidence 223334445444 468999999999864 21 1222345678899999
Q ss_pred HcCCCCCCCcEEEEEecCC--CCc---CCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNR--PQE---LDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNr--Pd~---LDpALlRRFDr~I~IplPd~ 570 (646)
|+.. ..+++||+||+. ++. ++|++++||+..|+||.++.
T Consensus 154 le~~---~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 154 MENQ---RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred HhcC---CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 9854 346888888764 332 58999999999999999863
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.28 E-value=2.5e-11 Score=124.26 Aligned_cols=140 Identities=19% Similarity=0.303 Sum_probs=93.6
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccc-cCCCC--CccccccCCCC--------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFK-GCRSP--GKGLLLFGPPI-------------------------------- 454 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~-~~~~P--prGVLLyGPPv-------------------------------- 454 (646)
+++++|++.+|+.|++++.++........ +...+ ...+||||||+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 47899999999999999999765433222 22222 35689999992
Q ss_pred ------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 455 ------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 455 ------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
|+.+..++.+|+.|. ++||||||+|.|.. . ++.......+..|+..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---------------------~----~~~~~~~~~i~~Ll~~ 136 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---------------------G----GEKDFGKEAIDTLVKG 136 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---------------------C----CccchHHHHHHHHHHH
Confidence 233445556665553 68999999999853 1 1112235577889999
Q ss_pred HcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 529 MEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
|+... ..++||+|+... ..++|++++||+..|.||.++ ..++..+++..
T Consensus 137 ~e~~~---~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~----~~el~~Il~~~ 190 (261)
T TIGR02881 137 MEDNR---NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT----VEELMEIAERM 190 (261)
T ss_pred HhccC---CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC----HHHHHHHHHHH
Confidence 88753 356666665432 247899999999989998754 45555555433
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.16 E-value=5.3e-10 Score=130.22 Aligned_cols=193 Identities=20% Similarity=0.292 Sum_probs=128.4
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------------------------------
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------------- 453 (646)
=++++|+|-++....+.+.+.. ....++||||||
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 3678999999888877665533 123688999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
.|+.+..++.+|+.|+...|+||||||||.|+. .+...+.. ..+-+.
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~---------------------~g~~~~~~---~~~~~~ 302 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVG---------------------AGATSGGS---MDASNL 302 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhc---------------------cCCCCCcc---HHHHHH
Confidence 456678999999999888899999999999987 22111111 112233
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC--------------------CCcHHHHHH
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS--------------------GYSGSDMKN 579 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~--------------------GySGADL~~ 579 (646)
|+..|. ++.|.+|||||.+ ..+|+|+.|||. .|+|+.|+. .|+...|..
T Consensus 303 L~~~l~-----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~ 376 (731)
T TIGR02639 303 LKPALS-----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEA 376 (731)
T ss_pred HHHHHh-----CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHH
Confidence 333332 3579999999973 468999999997 689999975 467777777
Q ss_pred HHHHHhhhHHHHH--------HHhchhhhhhcc--cCCCCccHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHhC
Q 006411 580 LVKEASMGPLREA--------LRQGIEITRLQK--EDMQPVTLQDFENALPQVR--A--SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 580 Lc~eAa~~Airr~--------l~~~~~~~~~~~--~~~~~Vt~eDFe~AL~kvr--P--Svs~~dl~~ye~w~k~fg 642 (646)
++..+....-.+. ++.......+.. .....|+.+|+..++..+. | .+++++.+.+....+.+.
T Consensus 377 ~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 377 AVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred HHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHh
Confidence 7766654322211 111110001111 1234599999999999885 3 456677777777665543
No 47
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.5e-10 Score=132.20 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.+-.|..+..+|..|++.+|+|||+-+.|.|.- .+.+ ++.-.....+++++. +|-+.
T Consensus 472 ~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i---------------------d~dg-ged~rl~~~i~~~ls-~e~~~ 528 (953)
T KOG0736|consen 472 ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI---------------------DQDG-GEDARLLKVIRHLLS-NEDFK 528 (953)
T ss_pred cchhHHHHHHHHHHHhhcCceEEEEeccceeee---------------------cCCC-chhHHHHHHHHHHHh-ccccc
Confidence 445667888889999999999999999999875 2222 222122223333333 44444
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------CCcHHHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------GYSGSDMKNLVKE 583 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------GySGADL~~Lc~e 583 (646)
....+++||+||+..+.|.+.+++-|-..|.+|.|++ |||.+||..++..
T Consensus 529 ~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736|consen 529 FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcC
Confidence 3467899999999999999999998888999999986 9999999999998
Q ss_pred HhhhHHHHHHHhchh---hh---hhcccCCCCccHHHHHHHHhhcC------------CCCCHHHHHHHHHHHHH
Q 006411 584 ASMGPLREALRQGIE---IT---RLQKEDMQPVTLQDFENALPQVR------------ASVSLNELGIYEEWNKQ 640 (646)
Q Consensus 584 Aa~~Airr~l~~~~~---~~---~~~~~~~~~Vt~eDFe~AL~kvr------------PSvs~~dl~~ye~w~k~ 640 (646)
+...+..+...++.- .. .........++++||.+|+.+++ |.|+|+|++++++.+.+
T Consensus 609 ~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 609 SSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred chHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHH
Confidence 866666555443310 00 00112336799999999999876 89999999999998865
No 48
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=8.2e-10 Score=125.53 Aligned_cols=186 Identities=20% Similarity=0.300 Sum_probs=138.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-----------------------------------Cc
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-----------------------------------IG 455 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-----------------------------------vG 455 (646)
.|++-+..+|++..+....|. ..+..|||+||+ ..
T Consensus 408 ~d~i~~~s~kke~~n~~~spv----------~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV----------FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhcccc----------cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 678888888888777665652 124689999999 22
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH-cCCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM-EGFDS 534 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL-DGl~~ 534 (646)
...+.++.+|..|.+++|+||++|++|.|++. ....++........++.||+++ +-+..
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~--------------------s~~e~~q~~~~~~rla~flnqvi~~y~~ 537 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASA--------------------SSNENGQDGVVSERLAAFLNQVIKIYLK 537 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc--------------------CcccCCcchHHHHHHHHHHHHHHHHHHc
Confidence 23456777899999999999999999999871 1112222233344456666554 33444
Q ss_pred CCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------------------CCcHHHHHHHH
Q 006411 535 GSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------------GySGADL~~Lc 581 (646)
.+..|.||++.+..+.|.|-|.. +|+-++.+|.|+. ||...||..++
T Consensus 538 ~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 538 RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 35568999999999999999998 9999999999964 99999999999
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC------------CCHHHHHHHHH
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS------------VSLNELGIYEE 636 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS------------vs~~dl~~ye~ 636 (646)
..|...|+.+.+ +... ..++.++|.++|+.+.|. .-|+|++++.+
T Consensus 618 eRai~~a~leri---------s~~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~ 674 (952)
T KOG0735|consen 618 ERAIHEAFLERI---------SNGP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFE 674 (952)
T ss_pred HHHHHHHHHHHh---------ccCc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHH
Confidence 999998885532 2222 378999999999999874 55777776653
No 49
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.94 E-value=3.4e-09 Score=124.32 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=83.2
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCC-------------------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPI------------------------------------- 454 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPv------------------------------------- 454 (646)
++.|++.+|+.|.+++..+...+. .....+||||||+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGK------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 689999999999998876543221 1224799999991
Q ss_pred ---chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 455 ---GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 455 ---Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
|.....+...|..|....| ||||||||.+.. .. .++ ..+.||..||.
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~---------------------~~--~~~------~~~aLl~~ld~ 444 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGS---------------------SF--RGD------PASALLEVLDP 444 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCC---------------------cc--CCC------HHHHHHHhcCH
Confidence 1112244556666665656 889999999975 21 111 23456666653
Q ss_pred -----CCC-------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 532 -----FDS-------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 532 -----l~~-------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
+.. ...+|++|+|||.++.||++|++||+ .|+|+.|+
T Consensus 445 ~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~ 493 (775)
T TIGR00763 445 EQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYT 493 (775)
T ss_pred HhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCC
Confidence 111 12479999999999999999999995 67888876
No 50
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.91 E-value=1.6e-08 Score=118.47 Aligned_cols=87 Identities=29% Similarity=0.440 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.|+.+..++.+|+.++...++||||||||.|++ .+...+.......++..+|
T Consensus 260 ~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g---------------------~g~~~~g~~d~~nlLkp~L------- 311 (758)
T PRK11034 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---------------------AGAASGGQVDAANLIKPLL------- 311 (758)
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhc---------------------cCCCCCcHHHHHHHHHHHH-------
Confidence 456678899999999888899999999999987 2221111111122222222
Q ss_pred CCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
. ...+.|||||+.++ .+|+||.|||+ .|+|+.|+.
T Consensus 312 ~-~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~ 351 (758)
T PRK11034 312 S-SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSI 351 (758)
T ss_pred h-CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCH
Confidence 2 45799999999875 68999999996 799999986
No 51
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.88 E-value=7.8e-08 Score=101.72 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=115.4
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh----------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS---------------- 469 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar---------------- 469 (646)
.+.+|++++|.+++++.|...+..... ...++..+||||||+.++...++.+.....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHH
Confidence 456899999999999999888865221 124567899999995555555544433321
Q ss_pred -------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---------
Q 006411 470 -------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD--------- 533 (646)
Q Consensus 470 -------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~--------- 533 (646)
...++||||||||.+... ....|...|+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~---------------------------------~~e~l~~~~e~~~~~~~l~~~~ 139 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPV---------------------------------VEEILYPAMEDFRLDIMIGKGP 139 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchH---------------------------------HHHHHHHHHHhcceeeeeccCc
Confidence 124789999999988530 0011222222211
Q ss_pred -C-----CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhhH--H
Q 006411 534 -S-----GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMGP--L 589 (646)
Q Consensus 534 -~-----~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~A--i 589 (646)
. .-..+.+|+|||++..++++|++||...+.++.|+. .++..-+..|++.+.-.+ +
T Consensus 140 ~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 140 AARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred cccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHH
Confidence 0 013478899999999999999999999999998764 223322333332221110 0
Q ss_pred HHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHhC
Q 006411 590 REALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS---VSLNELGIYEEWNKQFG 642 (646)
Q Consensus 590 rr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS---vs~~dl~~ye~w~k~fg 642 (646)
...+...... ........|+.+++..++..+... ....+...+..+.+.|.
T Consensus 220 ~~~l~~~~~~--a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 220 NRLLRRVRDF--AQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHHHHHH--HHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 0111100000 001123568899999999887655 34455555555766654
No 52
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.88 E-value=8.9e-08 Score=99.31 Aligned_cols=122 Identities=25% Similarity=0.314 Sum_probs=82.4
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------------
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------------- 469 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------------- 469 (646)
+|+|++|.+++++.|..++...... ..++..+||||||+.++...++.+-....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHH
Confidence 6999999999999999888653221 13456799999994444444444433221
Q ss_pred ----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC------------
Q 006411 470 ----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------------ 533 (646)
Q Consensus 470 ----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------------ 533 (646)
...+.||||||||.+... ....|+..|+...
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~---------------------------------~~e~l~~~~~~~~~~~v~~~~~~~~ 121 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPA---------------------------------VEELLYPAMEDFRLDIVIGKGPSAR 121 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHH---------------------------------HHHHhhHHHhhhheeeeeccCcccc
Confidence 124679999999988541 0111222222111
Q ss_pred ---CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 ---SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ---~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....+.+|++||++..|++++++||...+.++.|+.
T Consensus 122 ~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~ 161 (305)
T TIGR00635 122 SVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTV 161 (305)
T ss_pred ceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCH
Confidence 0123488999999999999999999998899998865
No 53
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.76 E-value=3.3e-08 Score=117.31 Aligned_cols=120 Identities=21% Similarity=0.415 Sum_probs=84.4
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------------------------------
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------------- 453 (646)
=++++|+|-+.....+.+++.. .....+||+|||
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 4678899998865555554433 123578899999
Q ss_pred ---------CchHHHHHHHHHHHhh-hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVAS-CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar-~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
.|+.+..++.+|+.+. ...|+|||||||+.|.+ .+++.+..... .+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~---------------------~~~~~~~~d~~-~~-- 298 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---------------------AGKADGAMDAG-NM-- 298 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc---------------------CCCCccchhHH-HH--
Confidence 4566778999998754 45799999999999987 33233332222 22
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
|.-.| . .+.+.+||||+.++ .+|+|+.|||+ .|+++.|+.
T Consensus 299 -lkp~l----~-~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~ 343 (857)
T PRK10865 299 -LKPAL----A-RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSV 343 (857)
T ss_pred -hcchh----h-cCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCH
Confidence 22111 2 45799999999987 59999999998 578999975
No 54
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.70 E-value=8e-08 Score=114.03 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=83.7
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+=++++++|-++....+.+.+.. ....++||+|||
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 34678999988865555443322 113577888888
Q ss_pred ----------CchHHHHHHHHHHHhhh-cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASC-RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~-~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.+..++.+|+.++. ..++|||||||+.|.. .+.+.+... +.
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~---------------------~g~~~~~~d----~~ 305 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIG---------------------AGGQAGQGD----AA 305 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhcc---------------------CCCcccccc----HH
Confidence 46667899999999865 4689999999999986 222222111 22
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|+-.| . .+.+.+||||+.. ..+|+||+|||. .|+|+.|+.
T Consensus 306 n~Lkp~l----~-~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~ 352 (852)
T TIGR03345 306 NLLKPAL----A-RGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDE 352 (852)
T ss_pred HHhhHHh----h-CCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCH
Confidence 2233222 2 4579999999974 359999999995 789999986
No 55
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.68 E-value=1.8e-07 Score=105.80 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=44.8
Q ss_pred hcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh
Q 006411 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC 470 (646)
Q Consensus 400 ~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~ 470 (646)
....+..+.+|++|.|.+..++.|+..+..+ .+..|||||||+.+++...+.+.+.+++
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 112 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKK 112 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3455677899999999999999998664321 2467999999977777788877776643
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.7e-07 Score=102.58 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHH------------------------------
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGE------------------------------ 458 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGese------------------------------ 458 (646)
.|++|+|.+.+++.|+.++..+...+..+. +..+.++||||||+-++.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999988665333321 235689999999921111
Q ss_pred -------------------HHHHHHHHHhhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 459 -------------------KLVRALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 459 -------------------k~Vr~lF~~Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
..||.+++.+... ...|+||||+|.|-.
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------------------------- 131 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------------------------- 131 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------------------------
Confidence 1345555555421 123666666666633
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...|.||..|+.... ++++|.+|+.|+.|.|++++|+ ..|+|++|+.
T Consensus 132 ----~aanaLLk~LEep~~---~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~ 178 (394)
T PRK07940 132 ----RAANALLKAVEEPPP---RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSV 178 (394)
T ss_pred ----HHHHHHHHHhhcCCC---CCeEEEEECChHHChHHHHhhC-eEEECCCCCH
Confidence 235778888876433 4555555555999999999998 6889999965
No 57
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.64 E-value=1.7e-07 Score=110.88 Aligned_cols=121 Identities=21% Similarity=0.364 Sum_probs=89.1
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+-.|+.|+|-+..++.|.+++.. ..+.++||+|||
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 44588999999999998887644 234689999999
Q ss_pred ----------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
.|+.+..++.+|+.++...++|||||||+.|++ .+...+... +.+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~---------------------~g~~~g~~~----~a~ 297 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIG---------------------AGAAEGAID----AAN 297 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhc---------------------CCCCCCccc----HHH
Confidence 466788999999999888899999999999987 222222221 122
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
-|...|. .+.+.+||||+..+ ..|+++.|||.. |.++.|+.
T Consensus 298 lLkp~l~-----rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~ 343 (821)
T CHL00095 298 ILKPALA-----RGELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSV 343 (821)
T ss_pred HhHHHHh-----CCCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCH
Confidence 2222221 35689999999764 589999999975 68888764
No 58
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.60 E-value=2.1e-07 Score=110.55 Aligned_cols=121 Identities=20% Similarity=0.367 Sum_probs=82.9
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+=.++.++|-++....+.+.+.. .....+||+|||
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 44678899988866655554433 123567788888
Q ss_pred ----------CchHHHHHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.++.++.+|+.+... .|+|||||||+.|+. .+...+.. ...
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~---------------------~g~~~~~~----d~~ 291 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVG---------------------AGKAEGAM----DAG 291 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc---------------------CCCCcchh----HHH
Confidence 355667889999988654 699999999999986 22222211 122
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|.-.+ . ...+.+||||+.+ ..+|+|+.|||.. |+++.|+.
T Consensus 292 ~~Lk~~l----~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~ 338 (852)
T TIGR03346 292 NMLKPAL----A-RGELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTV 338 (852)
T ss_pred HHhchhh----h-cCceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCH
Confidence 2222222 2 4579999999987 4689999999964 78999974
No 59
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.48 E-value=1.3e-06 Score=92.62 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCC---cCCHHHHhccc-cEEEeCCCCC
Q 006411 537 EQILLVGATNRPQ---ELDEAARRRLT-KRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd---~LDpALlRRFD-r~I~IplPd~ 570 (646)
.+|.+|++||.++ .+++.+.+||. ..|+|++++.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~ 201 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA 201 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH
Confidence 5799999999987 58889988885 6788888764
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.2e-06 Score=93.69 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=80.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH---------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV--------------- 467 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~--------------- 467 (646)
.+..+-+|+||+|.+++++.|+..+.. +..+.++||||||+.+.....+.+-..
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 456688999999999999988876654 224578999999944343333333222
Q ss_pred ----------------------------------hhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 468 ----------------------------------ASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 468 ----------------------------------Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
+... ...||||||+|.|..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------------------- 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------------------- 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------------------
Confidence 2110 123556666655532
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.||..|+... ..+++|++|+.|..|++++++|+. .+.|..|+.
T Consensus 132 ----------~a~~~LLk~LE~p~---~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~ 178 (472)
T PRK14962 132 ----------EAFNALLKTLEEPP---SHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISD 178 (472)
T ss_pred ----------HHHHHHHHHHHhCC---CcEEEEEEeCChHhhhHHHhcCcE-EEEECCccH
Confidence 23567777777643 367777888889999999999985 678887765
No 61
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.38 E-value=2.5e-07 Score=76.62 Aligned_cols=35 Identities=54% Similarity=1.011 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhC
Q 006411 608 QPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 608 ~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg 642 (646)
.+|+++||+.||++++|||+.+||+.|++|.++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999998
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=6.3e-06 Score=88.90 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=83.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CC----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QP---- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aP---- 473 (646)
.+..+.+|+||+|.+.+++.|+..+.. +..+..+||+|||+.++...++.+.+...+. .|
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999999887754 2235789999999555555555555443211 12
Q ss_pred ------------eeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 474 ------------AVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 474 ------------sIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.++.+ |++..+... .......+.+.- +.-+..+....+.||..|+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~------------~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE 144 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDN------------IYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE 144 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHH------------HhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh
Confidence 23322 222222220 000000000000 0111222345677888887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+.+|++|+.++.|.++++.|+ ..+.|++|+.
T Consensus 145 e~~---~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~ 180 (363)
T PRK14961 145 EPP---QHIKFILATTDVEKIPKTILSRC-LQFKLKIISE 180 (363)
T ss_pred cCC---CCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCH
Confidence 643 36777888888999999999888 5678888764
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.34 E-value=3.7e-06 Score=88.75 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=83.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
++..+.+|+||+|.+.+++.|.+.+.. +..+..+||||||+.+.....+.+-+...+.
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456788999999999999999987743 2345789999999444444444443332211
Q ss_pred ----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 472 ----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 472 ----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.|.++.+|. +..+... +...+++...+.--- +..+.......+.||..|+...
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~p~~~~~~vvii---dea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDN------VKYAPSSGKYKVYII---DEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHH------HhcCcccCCceEEEE---eChhhcCHHHHHHHHHHHhCCc
Confidence 233454432 2222220 000000000000000 0011112345678888887643
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+++|++|+.++.|.+++++|+. .+++++|+.
T Consensus 146 ---~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~ 178 (355)
T TIGR02397 146 ---EHVVFILATTEPHKIPATILSRCQ-RFDFKRIPL 178 (355)
T ss_pred ---cceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCH
Confidence 367788888999999999999984 678877654
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.31 E-value=3.3e-06 Score=94.28 Aligned_cols=126 Identities=23% Similarity=0.254 Sum_probs=85.3
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH----------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG---------------- 466 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~---------------- 466 (646)
+++.+.+++||+|.+.+++.|++++.... .+.|++.+||||||+.+....++.+..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 46778899999999999999999986522 234578999999994444444443322
Q ss_pred ---------Hhhh------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 467 ---------VASC------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 467 ---------~Ar~------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.+.. ..+.||+|||+|.|.. . .+ ...++.|+..++.
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---------------------~----~d----~~~~~aL~~~l~~ 128 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---------------------N----ED----RGGARAILELIKK 128 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---------------------c----cc----hhHHHHHHHHHHc
Confidence 2211 2477999999998853 1 01 1234566666653
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. +..||++||.++.+++..+|+....|.|+.|+.
T Consensus 129 ~-----~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 129 A-----KQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred C-----CCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 2 345677899999999855554456789999876
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.28 E-value=4.4e-06 Score=87.19 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=81.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH--------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV-------------- 467 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~-------------- 467 (646)
..++.+-+++|++|-+++++.|+..+.. +..|..+||||||+.+....++.+...
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~ 80 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR 80 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc
Confidence 3567788999999999999999888752 234567778999944444444433221
Q ss_pred -----------hhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 468 -----------ASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 468 -----------Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+.. ..+.||||||+|.+.. ......|...|+..
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------------------------~~~~~~L~~~le~~ 128 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------------------------ADAQRHLRSFMEAY 128 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------------------------HHHHHHHHHHHHhc
Confidence 111 1466778888776622 01122344445554
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. .++.+|+|||.+..+++++++||. .+.++.|+.
T Consensus 129 ~---~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~ 162 (316)
T PHA02544 129 S---KNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTK 162 (316)
T ss_pred C---CCceEEEEcCChhhchHHHHhhce-EEEeCCCCH
Confidence 3 356788899999999999999995 678888864
No 66
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.7e-05 Score=85.00 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHH---------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLV--------------------- 461 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~V--------------------- 461 (646)
.+..+.+|+||+|.+.+++.|...+.. +..+..+||||||+.+....+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456789999999999999999888754 234579999999933333333
Q ss_pred ----------------HHHHHHhhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHH
Q 006411 462 ----------------RALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRL 521 (646)
Q Consensus 462 ----------------r~lF~~Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ri 521 (646)
+.+++.+... .+.||||||+|.+.. ..
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------------------------~~ 124 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------------------------AA 124 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------------------------HH
Confidence 3333333211 123555555554422 23
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.|+..|+... ...++|++|+.+..+.+++.+|+. .+.++.|+.
T Consensus 125 ~~~ll~~le~~~---~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~ 169 (367)
T PRK14970 125 FNAFLKTLEEPP---AHAIFILATTEKHKIIPTILSRCQ-IFDFKRITI 169 (367)
T ss_pred HHHHHHHHhCCC---CceEEEEEeCCcccCCHHHHhcce-eEecCCccH
Confidence 577887776642 345666677788999999998874 578887764
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.25 E-value=2.5e-05 Score=83.92 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc-cEEEeCCCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT-KRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD-r~I~IplPd~ 570 (646)
++..|+..++.... .+|.||+++|.++ .+|+.+.+||. ..|.+++++.
T Consensus 158 ~l~~l~~~~~~~~~--~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 158 VLYSLLRAHEEYPG--ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred HHHHHHHhhhccCC--CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCH
Confidence 56777776666543 3788999988764 57888888774 5678887764
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.25 E-value=5.1e-06 Score=85.08 Aligned_cols=134 Identities=24% Similarity=0.326 Sum_probs=80.6
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchH-------------------------HHH
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEG-------------------------EKL 460 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGes-------------------------ek~ 460 (646)
.+-+|+|++|.+++++.++-.+..-..+ ..+...+||||||+-++ ..-
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHH
Confidence 4568999999999999987666542221 23456899999991111 112
Q ss_pred HHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-------
Q 006411 461 VRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------- 533 (646)
Q Consensus 461 Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------- 533 (646)
+..++... ....|||||||+.+-. .+-..|+..|+...
T Consensus 92 l~~il~~l--~~~~ILFIDEIHRlnk---------------------------------~~qe~LlpamEd~~idiiiG~ 136 (233)
T PF05496_consen 92 LAAILTNL--KEGDILFIDEIHRLNK---------------------------------AQQEILLPAMEDGKIDIIIGK 136 (233)
T ss_dssp HHHHHHT----TT-EEEECTCCC--H---------------------------------HHHHHHHHHHHCSEEEEEBSS
T ss_pred HHHHHHhc--CCCcEEEEechhhccH---------------------------------HHHHHHHHHhccCeEEEEecc
Confidence 22232222 2467999999998853 12334555665332
Q ss_pred -CC-------CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 534 -SG-------SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 534 -~~-------~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
.. -.+..+||||.+...|.+.|+.||.-...+.. |+..+|..++..++
T Consensus 137 g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~----Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 137 GPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF----YSEEELAKIVKRSA 192 (233)
T ss_dssp SSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE--------THHHHHHHHHHCC
T ss_pred ccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc----CCHHHHHHHHHHHH
Confidence 10 13578999999999999999999988777765 89999999997655
No 69
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.8e-05 Score=89.38 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=87.8
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR---------- 471 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~---------- 471 (646)
..++.+.+|+||+|.+.+++.|+.++.. +..+..+||||||+.+....++.+.....+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4567789999999999999999988764 2345678999999655555665555444321
Q ss_pred ----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 472 ----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 472 ----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.|.++.|+- |..+.. ......+...+.- +.-+..+....+.||..|+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~------------~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE 141 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAASNNSVEDVRDLRE------------KVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE 141 (504)
T ss_pred hhhHHHhcCCCCceEEecccccCCHHHHHHHHH------------HHhhccccCCCeEEEEECccccCHHHHHHHHHHHH
Confidence 233554432 222211 0000000000000 1112223456788888887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+++|.+|+.+..|.+++++|+. ++.|..|+.
T Consensus 142 ep~---~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~ 177 (504)
T PRK14963 142 EPP---EHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTE 177 (504)
T ss_pred hCC---CCEEEEEEcCChhhCChHHhcceE-EEEecCCCH
Confidence 643 367888888999999999999875 678887754
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.20 E-value=1.3e-05 Score=94.88 Aligned_cols=133 Identities=21% Similarity=0.341 Sum_probs=82.1
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHH-------------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKL------------------------------- 460 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~------------------------------- 460 (646)
|+.|++.+|+.|.+++........ .....++|+|||+.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 689999999999998875332111 1234699999992222221
Q ss_pred ---------HHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 461 ---------VRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 461 ---------Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
+...+..+....| ||||||||.+.. ... ++ ..+.||..||.
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~---------------------~~~--g~------~~~aLlevld~ 446 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSS---------------------DMR--GD------PASALLEVLDP 446 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccc---------------------ccC--CC------HHHHHHHHhcc
Confidence 1222333333334 899999998865 211 11 24566666663
Q ss_pred C-----CC-------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 532 F-----DS-------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 532 l-----~~-------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
- .. .-.+|++|+|||.. .|++||+.||+ .|.++ +|+..++..|++....
T Consensus 447 ~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~----~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 447 EQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLS----GYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecC----CCCHHHHHHHHHHhhh
Confidence 1 10 12579999999987 59999999996 34433 4566666666665554
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.19 E-value=6.9e-06 Score=85.80 Aligned_cols=54 Identities=26% Similarity=0.229 Sum_probs=40.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
++.+.+|++|+|.+.+++.|...+..+ . ...+||||||+.++...++.+...+.
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-----------~-~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-----------N-LPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-----------C-CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999998877531 1 13699999996666666766665553
No 72
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.18 E-value=1.9e-05 Score=86.52 Aligned_cols=126 Identities=26% Similarity=0.382 Sum_probs=82.7
Q ss_pred CCCCcccccccChHHHHHH---HHHHHHhhccCccccccCCCCCccccccCCC------------------------Cch
Q 006411 404 RDPHVRWDDIAGLEHAKKC---VMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------IGE 456 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~---L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------vGe 456 (646)
+..+-+++|++|.+++... |.+++.. ..+..+|||||| ...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3456789999999998666 7777633 113479999999 222
Q ss_pred HHHHHHHHHHHhhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 457 GEKLVRALFGVASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 457 sek~Vr~lF~~Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+...++.+++.+.. ....||||||||.+.. ...+.|+..|+.
T Consensus 73 ~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~---------------------------------~~q~~LL~~le~- 118 (413)
T PRK13342 73 GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK---------------------------------AQQDALLPHVED- 118 (413)
T ss_pred cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------------------------------HHHHHHHHHhhc-
Confidence 33456666776642 2568999999998743 012345555543
Q ss_pred CCCCCcEEEEEecC-C-CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 533 DSGSEQILLVGATN-R-PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 533 ~~~~~~VlVIaATN-r-Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
..+++|++|+ . ...+++++++|+ ..+.++.|+. .|+..+++.+
T Consensus 119 ----~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~----e~i~~lL~~~ 163 (413)
T PRK13342 119 ----GTITLIGATTENPSFEVNPALLSRA-QVFELKPLSE----EDIEQLLKRA 163 (413)
T ss_pred ----CcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCH----HHHHHHHHHH
Confidence 3466676653 3 458999999999 6677877654 5555555544
No 73
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2e-05 Score=92.16 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=84.3
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-h----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-C---------- 470 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~---------- 470 (646)
..++.+-+|+||+|.+.+++.|+..+.. +..+..+||||||+. +.+.+..+|..+- +
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~Gt-GKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGT-GKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCC-cHHHHHHHHHHHhcccccCCCCCch
Confidence 3466789999999999999999998854 234578999999933 3333333333221 1
Q ss_pred --------cCCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHcC
Q 006411 471 --------RQPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 471 --------~aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLDG 531 (646)
..|.++.+| +|..|.. ..+...+.+.+.- +.-+..+....+.||..|+.
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie------------~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE 144 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIE------------NVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE 144 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHH------------HHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc
Confidence 012233332 2333322 0000001111100 11122233467889988887
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. +.+++|++|+.++.|.+.+++|+. ++.|..|+.
T Consensus 145 PP---~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~ 179 (725)
T PRK07133 145 PP---KHVIFILATTEVHKIPLTILSRVQ-RFNFRRISE 179 (725)
T ss_pred CC---CceEEEEEcCChhhhhHHHHhhce-eEEccCCCH
Confidence 53 467888888899999999999995 678877754
No 74
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.1e-07 Score=104.50 Aligned_cols=225 Identities=13% Similarity=-0.030 Sum_probs=173.2
Q ss_pred cCCCCCCCchhhHhHHHHHHhhhhhccccccccccCCchhhhHHHHHHhhccccCCCcccccccchhcHHHHHHhHHHHH
Q 006411 7 CGEVPKTTSCWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIRREAVAKLDEAR 86 (646)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~~s~~fg~d~~~~~~~~~~~~~l~~~ll~f~~s~~~~~~~~~~~~~i~~~~~~~~~~a~ 86 (646)
.+..+....||++||.+++++++...|+.+...++-..+.+.++.||..+|++.+......-.|..|......-..+-|.
T Consensus 129 ~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 129 KEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred ccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHhccCCCcccccCCccceeehhhhHHHHHHHhhhchhhhhhhcCccccccccccccchhhhHhhhhh
Q 006411 87 RALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNEQATSELGGRLDRQGKLFSNQSKVMTQEKLAS 166 (646)
Q Consensus 87 ~~~~~~~d~~~~~~a~~~~~~~f~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~q~~l~s 166 (646)
++.++..+..|+.++.+.+|-. .++--++.+|.+++|+-... .++.-.-|..+ .++....+.+.+||..++.
T Consensus 209 E~~atff~iSassLtsK~~Ge~--eK~vralf~vAr~~qPsvif---idEidslls~R---s~~e~e~srr~ktefLiq~ 280 (428)
T KOG0740|consen 209 ESGATFFNISASSLTSKYVGES--EKLVRALFKVARSLQPSVIF---IDEIDSLLSKR---SDNEHESSRRLKTEFLLQF 280 (428)
T ss_pred hhcceEeeccHHHhhhhccChH--HHHHHHHHHHHHhcCCeEEE---echhHHHHhhc---CCcccccchhhhhHHHhhh
Confidence 9999999999999999999976 66666777777777776655 66667777776 3444456679999999999
Q ss_pred hhcCCccccCCCCCCccc---ccCCCCCccceeeecCCcccCCCCCCCcccccchhHhhcCCCCCCCCccCcccCCCCCc
Q 006411 167 LYGNNIMKTNTGSFRSML---NSKSNGSEDCVIVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTN 243 (646)
Q Consensus 167 l~~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~p~~ 243 (646)
+|.+.... ++-++ ++.+-..+||+.. +-+.. .+ .+|.|.+.+.-.+
T Consensus 281 ~~~~s~~~-----drvlvigaTN~P~e~Dea~~R-rf~kr------------------------~y-iplPd~etr~~~~ 329 (428)
T KOG0740|consen 281 DGKNSAPD-----DRVLVIGATNRPWELDEAARR-RFVKR------------------------LY-IPLPDYETRSLLW 329 (428)
T ss_pred ccccCCCC-----CeEEEEecCCCchHHHHHHHH-Hhhce------------------------ee-ecCCCHHHHHHHH
Confidence 99887322 23333 3444566777766 43333 33 4555555444443
Q ss_pred CCCCCCCCCcCCCCCCCCCchhhhHHHHhHHHHHhcC
Q 006411 244 WISKSPSATENVNNDVSANGFVTAKAKLERDVRQRRG 280 (646)
Q Consensus 244 ~~~~sp~~~~~~~~~~~~~~F~tak~ql~~d~~~K~~ 280 (646)
. ....++ ++++.++.-.+.++.-+.++
T Consensus 330 ~--------~ll~~~--~~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 330 K--------QLLKEQ--PNGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred H--------HHHHhC--CCCccHHHHHHHHHHhcCcc
Confidence 3 333233 67788888888887777654
No 75
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.15 E-value=1e-05 Score=88.40 Aligned_cols=126 Identities=30% Similarity=0.450 Sum_probs=86.7
Q ss_pred CCcccccccChHHHH---HHHHHHHHhhccCccccccCCCCCccccccCCC------------------------CchHH
Q 006411 406 PHVRWDDIAGLEHAK---KCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------IGEGE 458 (646)
Q Consensus 406 p~VsfdDIgGle~~K---~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------vGese 458 (646)
.+-+++||+|.+++. .-|+++|.. ......+||||| +..+.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv 86 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV 86 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH
Confidence 367899999999876 344555433 123578999999 55567
Q ss_pred HHHHHHHHHhhhcC----CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 459 KLVRALFGVASCRQ----PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 459 k~Vr~lF~~Ar~~a----PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
+-||.+|+.|+... ..|||||||..+-. .. ...||-.|+
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------------------~Q---------QD~lLp~vE---- 129 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNK------------------------AQ---------QDALLPHVE---- 129 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------------------hh---------hhhhhhhhc----
Confidence 78999999996554 58999999998843 10 112444442
Q ss_pred CCCcEEEEEec-CCC-CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 535 GSEQILLVGAT-NRP-QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 535 ~~~~VlVIaAT-NrP-d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
++.|++|||| -.| ..|.+||++|.---..=|+ +..||+.+++.|+.
T Consensus 130 -~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L-----~~~di~~~l~ra~~ 177 (436)
T COG2256 130 -NGTIILIGATTENPSFELNPALLSRARVFELKPL-----SSEDIKKLLKRALL 177 (436)
T ss_pred -CCeEEEEeccCCCCCeeecHHHhhhhheeeeecC-----CHHHHHHHHHHHHh
Confidence 3456667665 344 4799999998754444444 67888888888664
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=1.2e-05 Score=90.20 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=79.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+-+|+||+|.+.+...|+.++.. +..+..+||||||+.++....+.+-+...+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 456678999999999999999888754 223467999999933333333333222211
Q ss_pred -----------------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 471 -----------------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 471 -----------------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
....|+||||+|.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------------------- 133 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------------------- 133 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------------------
Confidence 11235555555544
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
+....+.||..|+.. ...|++|++|+.++.|.+++++|+.+ +.|..++
T Consensus 134 --------s~~A~NALLKtLEEP---p~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls 181 (484)
T PRK14956 134 --------TDQSFNALLKTLEEP---PAHIVFILATTEFHKIPETILSRCQD-FIFKKVP 181 (484)
T ss_pred --------CHHHHHHHHHHhhcC---CCceEEEeecCChhhccHHHHhhhhe-eeecCCC
Confidence 234578888888653 35789999999999999999999855 4555543
No 77
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.2e-05 Score=88.39 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=84.1
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hc---------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CR--------- 471 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~--------- 471 (646)
..+..+.+|+||+|.+.+++.|+..+.. +..+..+|||||| |-+...+..+|..+- +.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~-GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPR-GTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCC-CCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3456788999999999999999988764 2345789999999 333333444443332 11
Q ss_pred ------------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 472 ------------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 472 ------------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|.++.||- |..|..+ +...+..+..+... -+.-+.-+....+.||..|+.
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~------v~~~p~~~~~kViI---IDE~~~Lt~~a~naLLKtLEe 145 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDK------VKYAPSEAKYKVYI---IDEVHMLSTGAFNALLKTLEE 145 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHH------HhhCcccCCeEEEE---EECcccCCHHHHHHHHHHhcC
Confidence 234544432 2222220 00000000000000 011122234467889988876
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. ..+++|.+|+.|+.|.+.+++|+. ++.|+.|+.
T Consensus 146 pp---~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~ 180 (559)
T PRK05563 146 PP---AHVIFILATTEPHKIPATILSRCQ-RFDFKRISV 180 (559)
T ss_pred CC---CCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCH
Confidence 53 367777778889999999999885 467877754
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=9.2e-06 Score=93.78 Aligned_cols=141 Identities=19% Similarity=0.187 Sum_probs=82.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc----------C
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------Q 472 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------a 472 (646)
.++.+-+|+||+|.+++++.|+.++.. ++.+..+||+||++-++....+.+-+...+. .
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456788999999999999999988864 2335789999999433333333332222221 1
Q ss_pred C----------------eeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHH
Q 006411 473 P----------------AVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQF 525 (646)
Q Consensus 473 P----------------sIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneL 525 (646)
| .+|.|| +|-.|... +... ...++.+ -+.-+..+....|.|
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~-----------~~~~-P~~gr~KViIIDEah~Ls~~AaNAL 144 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDK-----------AVYA-PTAGRFKVYMIDEVHMLTNHAFNAM 144 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHH-----------HHhc-hhcCCceEEEEEChHhcCHHHHHHH
Confidence 2 233322 22222110 0000 0000000 011122234567889
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|..|+.- ..++++|++||.++.|.+.|++|+ .++.|..++.
T Consensus 145 LKTLEEP---P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~ 185 (700)
T PRK12323 145 LKTLEEP---PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 185 (700)
T ss_pred HHhhccC---CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCCh
Confidence 9888764 347899999999999999999998 5567777754
No 79
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.3e-05 Score=86.73 Aligned_cols=106 Identities=25% Similarity=0.362 Sum_probs=83.7
Q ss_pred CCCccccccCCC------------------------------CchHHH--HHHHHHHHhhhcCCeeeeehhhhHHhhhcc
Q 006411 442 SPGKGLLLFGPP------------------------------IGEGEK--LVRALFGVASCRQPAVIFVDEIDSLLSQML 489 (646)
Q Consensus 442 ~PprGVLLyGPP------------------------------vGesek--~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~ 489 (646)
.+-..|||+||| ..|++| .|+.+|+.|++..-+||++|+|+.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 456899999999 444544 6899999999999999999999999851
Q ss_pred cccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHH-HHhccccEEEeCCC
Q 006411 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA-ARRRLTKRLYIPLP 568 (646)
Q Consensus 490 ~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpA-LlRRFDr~I~IplP 568 (646)
..-....+..++..|+..+.....+..+.+|++||.+-.-|-.. ++..|+..|.||.-
T Consensus 614 ---------------------vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 614 ---------------------VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred ---------------------cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 12233456789999999999988877789999999987666553 33389999998876
Q ss_pred CC
Q 006411 569 SS 570 (646)
Q Consensus 569 d~ 570 (646)
+.
T Consensus 673 ~~ 674 (744)
T KOG0741|consen 673 TT 674 (744)
T ss_pred Cc
Confidence 53
No 80
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.10 E-value=1.4e-05 Score=88.23 Aligned_cols=92 Identities=24% Similarity=0.414 Sum_probs=65.4
Q ss_pred eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-------CCCcEEEEEecC
Q 006411 474 AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGATN 546 (646)
Q Consensus 474 sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-------~~~~VlVIaATN 546 (646)
-||||||||.|+. +..+.+...+...+-..||..|+|-.- .+++|++|++-.
T Consensus 249 GIVfiDEiDKIa~---------------------~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GA 307 (441)
T TIGR00390 249 GIIFIDEIDKIAK---------------------KGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGA 307 (441)
T ss_pred CEEEEEchhhhcc---------------------cCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCC
Confidence 4999999999987 111112122223477789999888431 246799998864
Q ss_pred ----CCCcCCHHHHhccccEEEeCCCCC-----------------------------CCcHHHHHHHHHHHhh
Q 006411 547 ----RPQELDEAARRRLTKRLYIPLPSS-----------------------------GYSGSDMKNLVKEASM 586 (646)
Q Consensus 547 ----rPd~LDpALlRRFDr~I~IplPd~-----------------------------GySGADL~~Lc~eAa~ 586 (646)
.|.+|=|.|.-||..++.+..++. -|+-.-|+.+++.|..
T Consensus 308 F~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 308 FQLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred cCCCChhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 577788888889999999998875 4677777777777663
No 81
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=2.3e-05 Score=91.76 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=81.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CC----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QP---- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aP---- 473 (646)
.++.+-+|+||+|.+.+++.|+.++.. +..+..+||||||+.++....+.+-+...+. .|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456788999999999999999988743 2345789999999444433333322222110 12
Q ss_pred ------------eeeeehhh--------hHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHHc
Q 006411 474 ------------AVIFVDEI--------DSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 474 ------------sIIFIDEI--------DsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eLD 530 (646)
.++.||.. -.|... + .......+.+ -+.-|..+....|.||..|+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~-----------a-~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE 144 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLER-----------A-VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE 144 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHH-----------H-HhccccCCceEEEEeChhhCCHHHHHHHHHHHH
Confidence 23443321 111110 0 0000000000 01112223345788998887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+++|++||.++.|.+.|++|+ .++.|..++.
T Consensus 145 EPP---~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~ 180 (830)
T PRK07003 145 EPP---PHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180 (830)
T ss_pred hcC---CCeEEEEEECChhhccchhhhhe-EEEecCCcCH
Confidence 753 37899999999999999999998 4556666543
No 82
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=2e-05 Score=91.56 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=80.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+-+|+||+|.+.+++.|+..+.. ++.+.++||||||+.++....+.+-...-+.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456788999999999999999998764 2346889999999333333332222211110
Q ss_pred ----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 472 ----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 472 ----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
-+.++.|| +|..++.. +...+.+...+...- +.-+..+....+.||..|+...
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~------a~~~P~~gk~KVIII---DEad~Ls~~A~NALLKtLEEPp 147 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN------AQYAPTAGKYKVYII---DEVHMLSKSAFNAMLKTLEEPP 147 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHH------HHhhhhhCCcEEEEE---ECccccCHHHHHHHHHHHHhCC
Confidence 11222222 22222220 000000000000000 0111222345788999998753
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+.+|++|+.+..|.+.++.|+ .++.|+.++.
T Consensus 148 ---~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~ 180 (709)
T PRK08691 148 ---EHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTA 180 (709)
T ss_pred ---CCcEEEEEeCCccccchHHHHHH-hhhhcCCCCH
Confidence 36788888999999999999887 3345556543
No 83
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.07 E-value=1.7e-05 Score=87.75 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=54.3
Q ss_pred eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-------CCCcEEEEEec-
Q 006411 474 AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGAT- 545 (646)
Q Consensus 474 sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-------~~~~VlVIaAT- 545 (646)
-||||||||.|+. +..+.+...+...+-..||..|+|-.- .+++|++|++-
T Consensus 251 GIVfiDEiDKIa~---------------------~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GA 309 (443)
T PRK05201 251 GIVFIDEIDKIAA---------------------RGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGA 309 (443)
T ss_pred CEEEEEcchhhcc---------------------cCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCC
Confidence 3999999999987 111111122233477789999988421 24679999874
Q ss_pred ---CCCCcCCHHHHhccccEEEeCCCCC
Q 006411 546 ---NRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 546 ---NrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|.+|=|.|.-||..++.+..++.
T Consensus 310 F~~~kp~DlIPEl~GR~Pi~v~L~~L~~ 337 (443)
T PRK05201 310 FHVSKPSDLIPELQGRFPIRVELDALTE 337 (443)
T ss_pred cCCCChhhccHHHhCccceEEECCCCCH
Confidence 4578888999999999999988764
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=6.2e-05 Score=85.16 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=83.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+-+|+|++|.+.+++.|+..+.. +..+.++||+|||+.++....+.+....-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456788999999999999998886644 2345789999999444444444443332221
Q ss_pred --------------CCeeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 472 --------------QPAVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 472 --------------aPsIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
.|.++.| |+|..+... +...+++...+... -+.-+.-+....+.||..|
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~------a~~~P~~~~~KVvI---IDEa~~Ls~~a~naLLk~L 152 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIES------AEYKPLQGKHKIFI---IDEVHMLSKGAFNALLKTL 152 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHH------HHhccccCCcEEEE---EEChhhcCHHHHHHHHHHH
Confidence 1233333 223333220 00000000000000 0111222234567888888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.. ...+++|++|+.++.|.+++++|+ .+++|..++.
T Consensus 153 Eep---p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~ 189 (507)
T PRK06645 153 EEP---PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSF 189 (507)
T ss_pred hhc---CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCH
Confidence 753 346788888899999999999988 5678877754
No 85
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.05 E-value=7.6e-05 Score=82.46 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=68.8
Q ss_pred ccChHHHHHHHHHHHHhhccCccccc----cCCCCCccccccCCCC--------------------------------ch
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFK----GCRSPGKGLLLFGPPI--------------------------------GE 456 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~----~~~~PprGVLLyGPPv--------------------------------Ge 456 (646)
|+|.+.+|+.|...|..++++-.... ....+..+|||+|||+ |+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999888866554332111 1123457899999991 11
Q ss_pred -HHHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHH
Q 006411 457 -GEKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 457 -sek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eL 529 (646)
.+..+..++..+ ....++||||||||.+.. ++.+ ...+.....+.+.||..|
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~---------------------~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR---------------------KSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc---------------------ccCCCCcCCCcccHHHHHHHHHHH
Confidence 133344444322 234789999999999976 2111 111112235778899999
Q ss_pred cCCC----------CCCCcEEEEEecCC
Q 006411 530 EGFD----------SGSEQILLVGATNR 547 (646)
Q Consensus 530 DGl~----------~~~~~VlVIaATNr 547 (646)
||-. ......++|+|+|-
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 8642 01124567777776
No 86
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.04 E-value=5.8e-05 Score=83.62 Aligned_cols=125 Identities=18% Similarity=0.319 Sum_probs=74.7
Q ss_pred CCCCcccccc-cChH--HHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc---------
Q 006411 404 RDPHVRWDDI-AGLE--HAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR--------- 471 (646)
Q Consensus 404 ~~p~VsfdDI-gGle--~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~--------- 471 (646)
..|..+|++. .|-. .+...++++...| +.....++|||||+.++...++.+...+...
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4577899994 4532 2555555554432 1223569999999555555555554444322
Q ss_pred --------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 472 --------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 472 --------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.+.+|+|||||.+.. ++ ....+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------~~----------~~~~~l 233 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG---------------------KE----------RTQEEF 233 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC---------------------CH----------HHHHHH
Confidence 355778888887754 11 122344
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhccc--cEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFD--r~I~IplPd~ 570 (646)
+..++.+.. ....+||+++..|.. ++++++.||. ..+.|..|+.
T Consensus 234 ~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 234 FHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 444444433 223466666666655 7789888996 4788999986
No 87
>PLN03025 replication factor C subunit; Provisional
Probab=98.02 E-value=4e-05 Score=81.08 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=78.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh--------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA-------------- 468 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A-------------- 468 (646)
+++.+-+|+||.|.+++++.|+.++.. +.. ..+||||||+.++...++.+-..+
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456788999999999999999876543 111 358999999433333333222111
Q ss_pred -----------------hh------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 469 -----------------SC------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 469 -----------------r~------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.. ..+.||+|||+|.+.. ...+.|
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------------------------~aq~aL 119 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------------------------GAQQAL 119 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------------------------HHHHHH
Confidence 00 1256888888887743 113445
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+..|+.... .+.+|.+||.+..+.+++++|+. .+.|+.|+.
T Consensus 120 ~~~lE~~~~---~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~ 160 (319)
T PLN03025 120 RRTMEIYSN---TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSD 160 (319)
T ss_pred HHHHhcccC---CceEEEEeCCccccchhHHHhhh-cccCCCCCH
Confidence 666654432 35567788899999999999984 678888864
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=7.1e-05 Score=84.34 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=84.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
.++.+.+|+||+|.+.+++.|+..+.. +..+..+||+|||+. +.+.+-.+|..+-
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~-GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGV-GKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCc-cHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 356678999999999999999877644 344689999999933 3333333443321
Q ss_pred ---------hcCCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 470 ---------CRQPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 470 ---------~~aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
...|.++.||- |-.+.. .+...+++...+..- -+.-+.-+....+.||..|+..
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie------~~~~~P~~~~~KVvI---IDEah~Ls~~A~NaLLK~LEeP 143 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASNTSVDDIKVILE------NSCYLPISSKFKVYI---IDEVHMLSNSAFNALLKTLEEP 143 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccCCCHHHHHHHHH------HHHhccccCCceEEE---EeChHhCCHHHHHHHHHHHhCC
Confidence 12345565542 222221 000000100000000 0111222344678899888875
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. +.+++|++|+.++.|.+.+++|+ ..+.|..++.
T Consensus 144 p---~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~ 177 (491)
T PRK14964 144 A---PHVKFILATTEVKKIPVTIISRC-QRFDLQKIPT 177 (491)
T ss_pred C---CCeEEEEEeCChHHHHHHHHHhh-eeeecccccH
Confidence 4 36888888889999999999988 4467776654
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.00 E-value=0.00014 Score=79.42 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCCccccc-ccChHH--HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc---------
Q 006411 404 RDPHVRWDD-IAGLEH--AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR--------- 471 (646)
Q Consensus 404 ~~p~VsfdD-IgGle~--~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~--------- 471 (646)
-.+..+|++ ++|-.. +...++++...| +.....++|||||+.++...++++...+...
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 356789999 556333 344444444332 1224579999999666666666665544322
Q ss_pred --------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 472 --------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 472 --------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.+.+|+|||||.+.. ++ ....+|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------~~----------~~~~~l 221 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG---------------------KE----------RTQEEF 221 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC---------------------CH----------HHHHHH
Confidence 234677777776643 11 112344
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhcccc--EEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLTK--RLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFDr--~I~IplPd~ 570 (646)
+..++.+.. .+..+||.++..|.. +++.+++||.. .+.|+.||.
T Consensus 222 ~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 222 FHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred HHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 444444433 224466666666665 55788889974 789999985
No 90
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=7.8e-05 Score=86.44 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=79.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+-+|+||+|.+.+++.|..++.. +..+..+||||||+.++....+.+-+..-+
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456678999999999999999888853 234578999999933333333322222111
Q ss_pred ---------cCCeeeeehhhhHHhhhcccccccchhhhhhhhh----hccccC---CCCCchhhHHHHHHHHHHHcCCCC
Q 006411 471 ---------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKR----FYFQRK---SDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 471 ---------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr----~~~~R~---s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
..|.++.||-.+... ....+.....- ..++++ -+.-|.-+....+.||..|+...
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~--------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP- 146 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTK--------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP- 146 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCC--------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-
Confidence 012333332211000 00000000000 000000 01111222345678888888643
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+|++|+.+..+.+.+++|+. ++.|..++.
T Consensus 147 --~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~ 179 (702)
T PRK14960 147 --EHVKFLFATTDPQKLPITVISRCL-QFTLRPLAV 179 (702)
T ss_pred --CCcEEEEEECChHhhhHHHHHhhh-eeeccCCCH
Confidence 467888888999999999999884 567776654
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=4.8e-05 Score=86.37 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=81.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hc-----CC---
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CR-----QP--- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~-----aP--- 473 (646)
.+..+-+|+||+|.+.+++.|..++.. +..+..+||||||+.++.... .+|..+- +. .|
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A-~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLA-RILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHH-HHHHHHhcCCCCCCCCCCCC
Confidence 355678999999999999999888754 234578999999944333333 3333222 10 12
Q ss_pred -------------eeeeehh--------hhHHhhhcccccccchhhhhhhhh-hccccC---CCCCchhhHHHHHHHHHH
Q 006411 474 -------------AVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKR-FYFQRK---SDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 474 -------------sIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr-~~~~R~---s~~~~e~s~rilneLL~e 528 (646)
.++.+|- |-.|.. .+... ..+.++ -+.-+..+....|.||..
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~-------------~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~ 142 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLD-------------NAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKT 142 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHH-------------HHhhCcccCCceEEEEcCcccCCHHHHHHHHHH
Confidence 2333331 111111 00000 000000 011122334567889988
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+... +.+++|++|+.|+.+-+.+++|+ ..+.|..|+.
T Consensus 143 LEepp---~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~ 180 (527)
T PRK14969 143 LEEPP---EHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 180 (527)
T ss_pred HhCCC---CCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCH
Confidence 88753 46788888888999998888887 5567777754
No 92
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=5.3e-05 Score=85.71 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=79.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.++.+-+|+||+|.+.+++.|+.++.. +..+..+||||||+.++....+.+-+..-+
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 456788999999999999999988854 234578999999933333333322222211
Q ss_pred ---------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC-------CCCchhhHHHHHHHHHHHcCCCC
Q 006411 471 ---------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-------DGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 471 ---------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-------~~~~e~s~rilneLL~eLDGl~~ 534 (646)
..|.++.||-.+...- ...+.....-.+....+ +.-|.-+....+.||..|+...
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v--------~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp- 147 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKV--------EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP- 147 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCH--------HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-
Confidence 1122444442211100 00000000000000000 1112222345688998888754
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
+.+.+|++|+.++.|-+.+++|+ .++.|..++
T Consensus 148 --~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~ 179 (509)
T PRK14958 148 --SHVKFILATTDHHKLPVTVLSRC-LQFHLAQLP 179 (509)
T ss_pred --CCeEEEEEECChHhchHHHHHHh-hhhhcCCCC
Confidence 36788888889999999988888 444565543
No 93
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=5.8e-05 Score=84.13 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=81.4
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+.+|+||+|.+.+++.|+..+.. +..+..+||||||+.+....++.+-+..-+.
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 345678999999999999999888854 2345789999999444444443333332221
Q ss_pred -----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHH
Q 006411 472 -----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 472 -----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eL 529 (646)
.+.++.|| +|..+... ..+ ....+.+.- +.-+..+....+.||..|
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~---------l~~---~~~~~~~kvvIIdead~lt~~~~n~LLk~l 145 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINET---------VLF---TPSKSRYKIYIIDEVHMLTKEAFNSLLKTL 145 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHH---------HHh---hhhcCCCEEEEEecHHhhCHHHHHHHHHHh
Confidence 12233333 22211110 000 000000000 011112233567788888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+... +.+++|++||.+..|.+++++|+. .++|+.++.
T Consensus 146 Eep~---~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~ 182 (451)
T PRK06305 146 EEPP---QHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPE 182 (451)
T ss_pred hcCC---CCceEEEEeCChHhcchHHHHhce-EEeCCCCCH
Confidence 8743 467888888999999999999985 568877754
No 94
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.95 E-value=7.7e-05 Score=78.74 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=91.8
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh----------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS---------------- 469 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar---------------- 469 (646)
.+-+|+|.+|.+.+|+.|.=.+..--.+ ....-.|||||||+-++..+.+-+-....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gD 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGD 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhh
Confidence 3568999999999999998877663322 23457899999993222222222211111
Q ss_pred -------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---------
Q 006411 470 -------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD--------- 533 (646)
Q Consensus 470 -------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~--------- 533 (646)
-....|+|||||..|.+. +-.-|---|+.+.
T Consensus 94 laaiLt~Le~~DVLFIDEIHrl~~~---------------------------------vEE~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 94 LAAILTNLEEGDVLFIDEIHRLSPA---------------------------------VEEVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred HHHHHhcCCcCCeEEEehhhhcChh---------------------------------HHHHhhhhhhheeEEEEEccCC
Confidence 113569999999998651 0111122232221
Q ss_pred -C-----CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 534 -S-----GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 534 -~-----~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
. .-....+||||.|.-.|..-|+.||.....+.. |+..||+.++..++.
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlef----Y~~~eL~~Iv~r~a~ 195 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEF----YTVEELEEIVKRSAK 195 (332)
T ss_pred ccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeec----CCHHHHHHHHHHHHH
Confidence 1 124578999999999999999889988877766 999999999987774
No 95
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00012 Score=82.32 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=78.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------C----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------Q---- 472 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------a---- 472 (646)
.+..+-+|+||+|.+.+++.|+..+.. +..+..+||||||+.+. ..+..+|..+-.. .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GK-TtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGK-TTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCH-HHHHHHHHHHhcCcCCCCCCCCCc
Confidence 355678999999999999999888844 23456789999993333 4444444333210 1
Q ss_pred ------------Ceeeeeh--------hhhHHhhhcccccccchhhhhhhhh-hccccCC---CCCchhhHHHHHHHHHH
Q 006411 473 ------------PAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKR-FYFQRKS---DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 473 ------------PsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr-~~~~R~s---~~~~e~s~rilneLL~e 528 (646)
|.++.|| +|..|.. .+... +.+.+.- +.-+..+....+.||..
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~-------------~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~ 142 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRD-------------AVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKT 142 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHH-------------HHHhCcccCCeeEEEEEChhhcCHHHHHHHHHH
Confidence 2233332 1222211 00000 0000000 11112223456778888
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+... ..+++|.+|+.++.|.+++++|+. ++.|++|+.
T Consensus 143 LEepp---~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~ 180 (486)
T PRK14953 143 LEEPP---PRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTK 180 (486)
T ss_pred HhcCC---CCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCH
Confidence 87653 356666677788999999998885 577877754
No 96
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=7.1e-05 Score=86.37 Aligned_cols=140 Identities=18% Similarity=0.161 Sum_probs=80.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-h-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-C----------- 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~----------- 470 (646)
.++.+.+|+||+|.+.+++.|..++.. +..+..+||||||+.++.. +-.+|..+- +
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTt-iArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTT-IARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHH-HHHHHHHhccccCCCCCCCCcc
Confidence 456788999999999999999988854 1224689999999333333 333333221 1
Q ss_pred ----------cCCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHH
Q 006411 471 ----------RQPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 471 ----------~aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eL 529 (646)
..|.+++||- |..|.. ........+.+. -+.-+.......+.||..|
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~------------~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~L 143 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKE------------AIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTL 143 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHHHHH------------HHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHh
Confidence 1233555532 111110 000000000000 0111222234568888888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+... ..+++|++||.+..|.+.+++|+. +|.|+.++.
T Consensus 144 EEP~---~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~ 180 (624)
T PRK14959 144 EEPP---ARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSE 180 (624)
T ss_pred hccC---CCEEEEEecCChhhhhHHHHhhhh-ccccCCCCH
Confidence 7643 468888899999999999888884 567777653
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.93 E-value=6.4e-05 Score=77.82 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=75.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
+++.+.+|+|+.|.+++++.|...+.. +.. ..+||||||+.+....++.+.......
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 456678999999999999999988743 111 248999999555555555554432110
Q ss_pred -------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 472 -------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 472 -------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.+.+|+|||+|.+.. ...+.|+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------------------~~~~~L~ 123 (319)
T PRK00440 77 SDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------------------DAQQALR 123 (319)
T ss_pred ccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------------------------HHHHHHH
Confidence 122444455444421 1234566
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..++.... ...+|.+||.+..+.+++.+|+. .+.+++|+.
T Consensus 124 ~~le~~~~---~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~ 163 (319)
T PRK00440 124 RTMEMYSQ---NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKK 163 (319)
T ss_pred HHHhcCCC---CCeEEEEeCCccccchhHHHHhh-eeeeCCCCH
Confidence 66665443 35566678888888888888886 478887764
No 98
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=0.00013 Score=64.49 Aligned_cols=45 Identities=40% Similarity=0.615 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCC---CCcEEEEEecCCCC--cCCHHHHhccccEEEeCC
Q 006411 523 TQFLIEMEGFDSG---SEQILLVGATNRPQ--ELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 523 neLL~eLDGl~~~---~~~VlVIaATNrPd--~LDpALlRRFDr~I~Ipl 567 (646)
..++..+..+... ..++.||++||.+. .+++.+..||+.+|++++
T Consensus 102 ~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 102 NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 3444444444321 35789999999988 789999999998888763
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.93 E-value=0.00019 Score=71.70 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCCCccccccc--ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcC---------
Q 006411 404 RDPHVRWDDIA--GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQ--------- 472 (646)
Q Consensus 404 ~~p~VsfdDIg--Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a--------- 472 (646)
..++.+|+++. +-+.+...+++++.. ......++|+|||+.++...++.+...+....
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 45568888855 345666666665431 12346899999997777777777776653322
Q ss_pred -----------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEE
Q 006411 473 -----------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILL 541 (646)
Q Consensus 473 -----------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlV 541 (646)
..+|+|||+|.+-. .....|+..++.... ....+|
T Consensus 80 ~~~~~~~~~~~~~~liiDdi~~l~~---------------------------------~~~~~L~~~~~~~~~-~~~~~v 125 (227)
T PRK08903 80 SPLLAFDFDPEAELYAVDDVERLDD---------------------------------AQQIALFNLFNRVRA-HGQGAL 125 (227)
T ss_pred HhHHHHhhcccCCEEEEeChhhcCc---------------------------------hHHHHHHHHHHHHHH-cCCcEE
Confidence 34666666665421 011233334443333 223334
Q ss_pred EEecCCCC---cCCHHHHhcc--ccEEEeCCCCC
Q 006411 542 VGATNRPQ---ELDEAARRRL--TKRLYIPLPSS 570 (646)
Q Consensus 542 IaATNrPd---~LDpALlRRF--Dr~I~IplPd~ 570 (646)
|.|++.+. .+.+.++.|| ...+.+|+|+.
T Consensus 126 l~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~ 159 (227)
T PRK08903 126 LVAGPAAPLALPLREDLRTRLGWGLVYELKPLSD 159 (227)
T ss_pred EEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCH
Confidence 44444332 3567888787 57889999985
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.90 E-value=0.00022 Score=70.56 Aligned_cols=129 Identities=17% Similarity=0.251 Sum_probs=74.3
Q ss_pred CCccccccc--ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------------
Q 006411 406 PHVRWDDIA--GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------ 471 (646)
Q Consensus 406 p~VsfdDIg--Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------ 471 (646)
...+|+++. +.+.+.+.|++++. ...+..|||||||+.++...++.+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456677764 46667777777653 1235789999999666766777766554311
Q ss_pred ------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcE
Q 006411 472 ------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539 (646)
Q Consensus 472 ------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~V 539 (646)
.+.+|+|||+|.+.. . ... ...+-.++..+. . .+..
T Consensus 78 ~~~~~~~~~~~~~~~lLvIDdi~~l~~---------------------~------~~~-~~~L~~~l~~~~---~-~~~~ 125 (226)
T TIGR03420 78 AQADPEVLEGLEQADLVCLDDVEAIAG---------------------Q------PEW-QEALFHLYNRVR---E-AGGR 125 (226)
T ss_pred HHhHHHHHhhcccCCEEEEeChhhhcC---------------------C------hHH-HHHHHHHHHHHH---H-cCCe
Confidence 234788888887643 0 000 112223333322 2 1234
Q ss_pred EEEEecCCCCcCC---HHHHhccc--cEEEeCCCCCCCcHHHHHHHHH
Q 006411 540 LLVGATNRPQELD---EAARRRLT--KRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 540 lVIaATNrPd~LD---pALlRRFD--r~I~IplPd~GySGADL~~Lc~ 582 (646)
+||.++..+..++ +.+.+||. .+|.+|.|+. .++..+++
T Consensus 126 iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~----~e~~~~l~ 169 (226)
T TIGR03420 126 LLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD----EEKIAALQ 169 (226)
T ss_pred EEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH----HHHHHHHH
Confidence 5555554554443 77887774 7888888875 44444443
No 101
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=7e-05 Score=89.11 Aligned_cols=141 Identities=19% Similarity=0.179 Sum_probs=82.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CCe---
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QPA--- 474 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aPs--- 474 (646)
.+..+.+|+||+|.+.+++.|+.++.. ++.+..+||||||+-++....+.+-+...+. .||
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 456678999999999999999887754 1335778999999444444444443333221 122
Q ss_pred -------------eeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHHc
Q 006411 475 -------------VIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 475 -------------IIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eLD 530 (646)
++.||- |-.|.. .+......+++. -+.-+..+....+.||..|+
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE 144 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLD------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE 144 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHH------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh
Confidence 232322 111111 000000000000 01122234557788999888
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+.+|++|+.+..|-+.|+.|+ .++.|..++.
T Consensus 145 EPP---~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~ 180 (944)
T PRK14949 145 EPP---EHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQ 180 (944)
T ss_pred ccC---CCeEEEEECCCchhchHHHHHhh-eEEeCCCCCH
Confidence 754 36778888999999999999988 4566666543
No 102
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.88 E-value=5.1e-05 Score=87.61 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=46.3
Q ss_pred hhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 397 VSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 397 v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
+...++....+-+|++|+|.+.+.+.+...+..+ .+..+||+|||+.+++..++.++..++
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3455666667889999999999988887666432 135699999998888888888877664
No 103
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00016 Score=83.70 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.-.|.||..|+... ..+++|++|+.|..|.+.+++|+ .++.|..++.
T Consensus 139 ~a~NaLLKtLEEPP---~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~ 185 (618)
T PRK14951 139 TAFNAMLKTLEEPP---EYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAP 185 (618)
T ss_pred HHHHHHHHhcccCC---CCeEEEEEECCchhhhHHHHHhc-eeeecCCCCH
Confidence 34677887777643 46778888888999999988898 5567766653
No 104
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00017 Score=82.14 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=88.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.++.+.+|+||+|.+.+++.|+..+.. +..+..+||||||+.+....++.+....-+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456788999999999999999888743 234578899999955555555554443321
Q ss_pred ---------cCCeeeeehhh-----hHHhhhcccccccchhhhhhhh----hhccccC---CCCCchhhHHHHHHHHHHH
Q 006411 471 ---------RQPAVIFVDEI-----DSLLSQMLPYMHVHHIKLFCLK----RFYFQRK---SDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 471 ---------~aPsIIFIDEI-----DsL~~k~~~~~~~~~~~~~~~k----r~~~~R~---s~~~~e~s~rilneLL~eL 529 (646)
..|.++.+|.. |.+-. .+.. .+.+.+. -+.-+..+....+.||..|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRe-------------lie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~L 141 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRE-------------LIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTL 141 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHH-------------HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHH
Confidence 23446655542 22221 1100 0000000 0112333456778899999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.... .+.+|.+|+.+..|.++++.|. .+++|..++.
T Consensus 142 EEpp~---~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~ 178 (535)
T PRK08451 142 EEPPS---YVKFILATTDPLKLPATILSRT-QHFRFKQIPQ 178 (535)
T ss_pred hhcCC---ceEEEEEECChhhCchHHHhhc-eeEEcCCCCH
Confidence 88633 5677777888999999999996 4678887764
No 105
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0002 Score=81.81 Aligned_cols=141 Identities=18% Similarity=0.142 Sum_probs=84.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----c------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-----R------ 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-----~------ 471 (646)
.+..+.+|+||+|.+.+++.|...+.. +..+..+||||||+.++....+.+-....+ .
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 345678999999999999999887754 233577999999955555544444443322 0
Q ss_pred ----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 472 ----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 472 ----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.|.++.|| ++..|... .+...+.+.+.- +.-+..+....+.||..|+
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE 144 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDN------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE 144 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHH------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh
Confidence 12344332 33333320 000001111100 1112233456788998888
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... +.+++|++|+.+..|-+.++.|+ ..++|..++.
T Consensus 145 epp---~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~ 180 (546)
T PRK14957 145 EPP---EYVKFILATTDYHKIPVTILSRC-IQLHLKHISQ 180 (546)
T ss_pred cCC---CCceEEEEECChhhhhhhHHHhe-eeEEeCCCCH
Confidence 653 35777777778999999988888 6677877754
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00018 Score=78.76 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=78.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-h-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-C----------- 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~----------- 470 (646)
.+..+.+|++|+|.+.+++.|+..+.. +..+..+||||||+.+... +-.+|..+- +
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt-~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTT-AARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHH-HHHHHHHHhcCCCCcCcccccc
Confidence 456788999999999999999887753 2346789999999443433 333333222 2
Q ss_pred --cCCe----------------eeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 471 --RQPA----------------VIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 471 --~aPs----------------IIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
..|| ++.| |+|-.+.... ...+++...+...- +.-+..+..-.+.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~------~~~p~~~~~kvvII---dea~~l~~~~~~~ 146 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENV------RYGPQKGRYRVYII---DEVHMLSIAAFNA 146 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHH------hhchhcCCeEEEEE---eChhhCCHHHHHH
Confidence 0122 3333 3333332200 00011111000000 1111122334567
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
||..|+... +.+++|++|+.+..|-+++++|+. .++|+.++.
T Consensus 147 LLk~LEep~---~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~ 188 (397)
T PRK14955 147 FLKTLEEPP---PHAIFIFATTELHKIPATIASRCQ-RFNFKRIPL 188 (397)
T ss_pred HHHHHhcCC---CCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCH
Confidence 887776543 356666677778888888888875 567776653
No 107
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00014 Score=84.50 Aligned_cols=141 Identities=19% Similarity=0.161 Sum_probs=82.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CC----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QP---- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aP---- 473 (646)
.+..+-+|+||+|.+.+++.|+..+.. +..+..+||+|||+.++....+.+-+..-+. .|
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 345678999999999999999887754 2235778999999443333333332222221 12
Q ss_pred ------------eeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 474 ------------AVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 474 ------------sIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.++.||- |-.|.. ....+...+.+.- +.-|.-+....|.||..|+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~------------~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE 144 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLD------------NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHH------------HHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH
Confidence 2333332 111111 0000000000000 1122233456788999888
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.-. +.+++|++|+.++.|-+.+++|+ ..+.|..++.
T Consensus 145 EPp---~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~ 180 (647)
T PRK07994 145 EPP---EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180 (647)
T ss_pred cCC---CCeEEEEecCCccccchHHHhhh-eEeeCCCCCH
Confidence 753 46888888999999999999996 6677887764
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=8.8e-05 Score=85.07 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=86.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+-+|+||+|.+++++.|...+.. +..+..+||||||+.+.....+.+-+..-+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 456788999999999999999988754 2346789999999444444444443333221
Q ss_pred ----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 472 ----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 472 ----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.+.++.|| +|..|... +...+.....+..- -+.-+.-+....|.||..|+...
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~------~~~~p~~~~~KVvI---Idev~~Lt~~a~naLLk~LEepp 147 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELREN------VKYLPSRSRYKIFI---IDEVHMLSTNAFNALLKTLEEPP 147 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHH------HHhccccCCceEEE---EEChhhCCHHHHHHHHHHHHcCC
Confidence 12244443 44444330 00001111000000 01112223445788999998753
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+++|++|+.|+.|.+.+++|+. ++.|..++.
T Consensus 148 ---~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~ 180 (576)
T PRK14965 148 ---PHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPL 180 (576)
T ss_pred ---CCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCH
Confidence 468888899999999999998874 567766643
No 109
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00016 Score=83.73 Aligned_cols=146 Identities=22% Similarity=0.368 Sum_probs=87.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------------- 453 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------------- 453 (646)
+|=-||+++|+.|.|++.--..+.. ...+=+.|+|||
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 3567899999999998866222211 112346688999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
+|...-.+=.-.+......| +|+|||||.|+. +-.++. .+.||..||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-----------------------g~qGDP------asALLElLD 534 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-----------------------GHQGDP------ASALLELLD 534 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-----------------------CCCCCh------HHHHHHhcC
Confidence 22222222222333333445 788999999974 122222 134454444
Q ss_pred CCCC------------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC---------------------CCcH---
Q 006411 531 GFDS------------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------GYSG--- 574 (646)
Q Consensus 531 Gl~~------------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~---------------------GySG--- 574 (646)
--.. .-.+|++|+|+|..+.|+++|+.|+.. |.+|-+ |.+.
T Consensus 535 PEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEv---IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v 611 (906)
T KOG2004|consen 535 PEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEV---IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV 611 (906)
T ss_pred hhhccchhhhccccccchhheEEEEeccccccCChhhhhhhhe---eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc
Confidence 2211 124699999999999999999988753 344432 4433
Q ss_pred --------HHHHHHHHHHhhhHHHHHHHh
Q 006411 575 --------SDMKNLVKEASMGPLREALRQ 595 (646)
Q Consensus 575 --------ADL~~Lc~eAa~~Airr~l~~ 595 (646)
+-|+.-|++|..+.+.+.+..
T Consensus 612 ~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 612 KISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 236677788887777766543
No 110
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.77 E-value=0.00027 Score=78.25 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=66.9
Q ss_pred cccChHHHHHHHHHHHHhhccCcccc-c-----cCCCCCccccccCCCCchH----------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIF-K-----GCRSPGKGLLLFGPPIGEG---------------------------- 457 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf-~-----~~~~PprGVLLyGPPvGes---------------------------- 457 (646)
-|+|.+++++.|..+|.....+-... . ........|||+|||+.+.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 48999999999988875433332110 0 0112246899999992211
Q ss_pred -----HHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHH
Q 006411 458 -----EKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFL 526 (646)
Q Consensus 458 -----ek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL 526 (646)
+..+..++..+ ...+|+||||||||.+.. ++.+. ........+.+.||
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~---------------------~~~~~s~~~dvsg~~vq~~LL 216 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR---------------------KSENPSITRDVSGEGVQQALL 216 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhch---------------------hhccccccccccchhHHHHHH
Confidence 22333333322 234678999999999986 21111 01111124778888
Q ss_pred HHHcCCCC----------CCCcEEEEEecCC
Q 006411 527 IEMEGFDS----------GSEQILLVGATNR 547 (646)
Q Consensus 527 ~eLDGl~~----------~~~~VlVIaATNr 547 (646)
..|+|.-. ...+.++|+|+|-
T Consensus 217 ~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 217 KIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred HHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 88887631 1235688888886
No 111
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.72 E-value=0.00046 Score=71.66 Aligned_cols=128 Identities=22% Similarity=0.335 Sum_probs=88.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.....+.++++.|++.+|+.|.+.....+. +.|...+||||+++.++...|+++.......
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 445689999999999999999988876442 4577899999999777788888876644332
Q ss_pred ---------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-CC
Q 006411 472 ---------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD-SG 535 (646)
Q Consensus 472 ---------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~-~~ 535 (646)
.+-|||+|++. +. ..+. -...|-..|||-- ..
T Consensus 91 L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-------------------------~~d~-----~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 91 LGDLPELLDLLRDRPYKFILFCDDLS--FE-------------------------EGDT-----EYKALKSVLEGGLEAR 138 (249)
T ss_pred hccHHHHHHHHhcCCCCEEEEecCCC--CC-------------------------CCcH-----HHHHHHHHhcCccccC
Confidence 24466666532 11 1111 2356666778654 34
Q ss_pred CCcEEEEEecCCCCcCCHH-----------------------HHhccccEEEeCCCCC
Q 006411 536 SEQILLVGATNRPQELDEA-----------------------ARRRLTKRLYIPLPSS 570 (646)
Q Consensus 536 ~~~VlVIaATNrPd~LDpA-----------------------LlRRFDr~I~IplPd~ 570 (646)
.++|+|.+|+||-..+.+- |--||.-.|.|..|+.
T Consensus 139 P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q 196 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQ 196 (249)
T ss_pred CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCH
Confidence 6799999999984333221 2228999999999985
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.00011 Score=78.24 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=86.6
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHH----HH------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRA----LF------------ 465 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~----lF------------ 465 (646)
.+++.+-+|+|+.|.+.+++.|+..+.. - --..+||||||+.+....++. +|
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 3466788999999999999999998855 1 124689999994443333222 21
Q ss_pred ------------------HHhhhcC----------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchh
Q 006411 466 ------------------GVASCRQ----------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHES 517 (646)
Q Consensus 466 ------------------~~Ar~~a----------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~ 517 (646)
+...... +-||+|||.|++..
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------------------------- 143 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------------------------- 143 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH-------------------------------
Confidence 1111111 15999999999854
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.|..-|+.+.. .+.+|..||.++.|..-+.+|..+-.+=++++.
T Consensus 144 --daq~aLrr~mE~~s~---~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~ 191 (346)
T KOG0989|consen 144 --DAQAALRRTMEDFSR---TTRFILICNYLSRIIRPLVSRCQKFRFKKLKDE 191 (346)
T ss_pred --HHHHHHHHHHhcccc---ceEEEEEcCChhhCChHHHhhHHHhcCCCcchH
Confidence 246788888988654 678888999999999999998888766677764
No 113
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00051 Score=78.95 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=81.4
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
+++.+.+|+||+|.+.+++.|+..+.. +..+..+||||||+.++...++.+-+...+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 466789999999999999999887754 1234678999999555555555544333221
Q ss_pred -----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhh-hccccCC---CCCchhhHHHHHHHHHH
Q 006411 472 -----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKR-FYFQRKS---DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 472 -----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr-~~~~R~s---~~~~e~s~rilneLL~e 528 (646)
.|.++.||. |-.|.. .|... +.+.+.- +.-+.......+.||..
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~-------------~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~ 143 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIE-------------RVQFRPALARYKVYIIDEVHMLSTAAFNALLKT 143 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHH-------------HHhhCcccCCeEEEEEeChHhCCHHHHHHHHHH
Confidence 133333332 111111 00000 0000000 11111223456788888
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+.... .+++|.+|+.++.+.+.+++|+. +++|..++.
T Consensus 144 LEepp~---~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~ 181 (585)
T PRK14950 144 LEEPPP---HAIFILATTEVHKVPATILSRCQ-RFDFHRHSV 181 (585)
T ss_pred HhcCCC---CeEEEEEeCChhhhhHHHHhccc-eeeCCCCCH
Confidence 877543 56777777788888888888875 467776654
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00017 Score=85.93 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=81.9
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR---------- 471 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~---------- 471 (646)
..++.+.+|+||+|.+.+++.|+.++.. +..+..+|||||++-++....+.+-....+.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 3567789999999999999999888754 2345789999999443333333332222210
Q ss_pred -------------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHH
Q 006411 472 -------------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLI 527 (646)
Q Consensus 472 -------------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~ 527 (646)
.+.++.||- |..|.. ...+ .....+.+ -+.-+..+....|.||.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~----------~~~~--~p~~~~~KV~IIDEad~lt~~a~NaLLK 142 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRE----------RAFF--APAESRYKIFIIDEAHMVTPQGFNALLK 142 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHH----------HHHh--chhcCCceEEEEechhhcCHHHHHHHHH
Confidence 122344432 111110 0000 00000000 01122233456788999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.|+.... .+++|++|+.++.|-+.|+.|+ .+|.|..++
T Consensus 143 ~LEEpP~---~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~ 180 (824)
T PRK07764 143 IVEEPPE---HLKFIFATTEPDKVIGTIRSRT-HHYPFRLVP 180 (824)
T ss_pred HHhCCCC---CeEEEEEeCChhhhhHHHHhhe-eEEEeeCCC
Confidence 9988644 6788888899999999998887 456776664
No 115
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00091 Score=74.69 Aligned_cols=198 Identities=15% Similarity=0.247 Sum_probs=99.5
Q ss_pred CCCCccccccc-ChH--HHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh----------
Q 006411 404 RDPHVRWDDIA-GLE--HAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC---------- 470 (646)
Q Consensus 404 ~~p~VsfdDIg-Gle--~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~---------- 470 (646)
..|..||++.+ |-. .+...++++...|-.. .+.+...++|||||+.++..+++++...+..
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQG------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccc------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 46788999875 422 2334555544332111 1123467999999955555555555443322
Q ss_pred -----------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 471 -----------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 471 -----------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
..+.+|+||||+.+.. +. . ...+|..
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~---------------------k~-------~---~qeelf~ 226 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG---------------------KG-------A---TQEEFFH 226 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC---------------------Ch-------h---hHHHHHH
Confidence 2355777777776643 11 0 1122333
Q ss_pred HHcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc--cEEEeCCCCC--------------C--CcHHHHHHHHHHHhh
Q 006411 528 EMEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT--KRLYIPLPSS--------------G--YSGSDMKNLVKEASM 586 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD--r~I~IplPd~--------------G--ySGADL~~Lc~eAa~ 586 (646)
.++.+.. ....+||.+++.|. .+++.|++||. ..+.++.|+. | ++..-+..|.....
T Consensus 227 l~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~- 304 (445)
T PRK12422 227 TFNSLHT-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS- 304 (445)
T ss_pred HHHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-
Confidence 3332222 12344444444454 56789999996 6777888875 2 22222222222221
Q ss_pred hHHHHH---HHhchhhhhhcccCCCCccHHHHHHHHhhc---CC--CCCHHHHHHHHHHHHHhC
Q 006411 587 GPLREA---LRQGIEITRLQKEDMQPVTLQDFENALPQV---RA--SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 587 ~Airr~---l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv---rP--Svs~~dl~~ye~w~k~fg 642 (646)
.-+++. +...............++++++..++|..+ .+ .++.+. ..+.|.+.||
T Consensus 305 ~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~t~~~--I~~~Va~~~~ 366 (445)
T PRK12422 305 SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAAESVRLTPSK--IIRAVAQYYG 366 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcccCCCCCHHH--HHHHHHHHhC
Confidence 111111 111000001111233578999999999875 22 244443 4567777776
No 116
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00018 Score=82.77 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=84.3
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC----------- 470 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~----------- 470 (646)
..+..+-+|++|+|.+.+++.|...+.. +..+.++||+|||+.+.....+.+-....+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456788999999999999999887643 234578999999944444444333332221
Q ss_pred ----------cCCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHH
Q 006411 471 ----------RQPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 471 ----------~aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eL 529 (646)
..|.++.||. |..+.. ..+...+.+.++- +.-+..+....+.||..|
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~------------~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtL 143 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIID------------NINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTL 143 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHH------------HHHhchhhCCcEEEEEechHhCCHHHHHHHHHHH
Confidence 1244555442 333322 0000001111100 011111233567889888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+... ..+++|++|+.+..|.+++++|+. ++.|+.|+.
T Consensus 144 EEPp---~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~ 180 (605)
T PRK05896 144 EEPP---KHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNN 180 (605)
T ss_pred HhCC---CcEEEEEECCChHhhhHHHHhhhh-hcccCCCCH
Confidence 8754 367888888889999999999986 568877754
No 117
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.69 E-value=0.00027 Score=78.93 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCcEEEEEecCCCC----cCCHHHHhccccEEEeCC
Q 006411 536 SEQILLVGATNRPQ----ELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 536 ~~~VlVIaATNrPd----~LDpALlRRFDr~I~Ipl 567 (646)
..++.||||+|..+ .||.|++|||.- |++.+
T Consensus 323 P~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 323 PENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred CCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 46899999999999 899999999954 55554
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00081 Score=77.96 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=81.4
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+.+|++|+|.+.+++.|+..+.. +..+.++||+||| |-+.+.+-.+|..+-.+
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~-GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLR-GVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCC-CCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 456788999999999999999886643 2345789999999 44444444444433211
Q ss_pred ---CC----------------eeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHH
Q 006411 472 ---QP----------------AVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRL 521 (646)
Q Consensus 472 ---aP----------------sIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~ri 521 (646)
.| .++.| |+|..+... ...+.+.+.++- +.-+..+..-
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~------------~~~~P~~~~~KVvIIdEad~Lt~~a 143 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLREN------------VRYGPQKGRYRVYIIDEVHMLSTAA 143 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHH------------HHhhhhcCCCEEEEEeChhhcCHHH
Confidence 12 23333 334333320 000011111110 1112223344
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.||..|+.... .+++|++|+.+..|-+.+++|. ..++|..++.
T Consensus 144 ~naLLK~LEePp~---~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~ 188 (620)
T PRK14954 144 FNAFLKTLEEPPP---HAIFIFATTELHKIPATIASRC-QRFNFKRIPL 188 (620)
T ss_pred HHHHHHHHhCCCC---CeEEEEEeCChhhhhHHHHhhc-eEEecCCCCH
Confidence 6788888877543 4666666777899999988887 4677877754
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.63 E-value=0.00039 Score=82.22 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHH-----------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVR----------------------------- 462 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr----------------------------- 462 (646)
.|+|.+++++.|.+.|..-... + ..-.+|...+||+|||+.++....+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g--l-~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG--L-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc--c-cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 4789999999999988753210 0 0012344569999999222221111
Q ss_pred ------------HHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 463 ------------ALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 463 ------------~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
.+.+..+....|||||||||.+-+ .+.+.||..||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------------------------~v~~~LLq~ld 582 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------------------DVFNLLLQVMD 582 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------------------------HHHHHHHHHHh
Confidence 122223444558999999998744 26677888777
Q ss_pred C-CCC-------CCCcEEEEEecCCC-------------------------CcCCHHHHhccccEEEeCCCCCCCcHHHH
Q 006411 531 G-FDS-------GSEQILLVGATNRP-------------------------QELDEAARRRLTKRLYIPLPSSGYSGSDM 577 (646)
Q Consensus 531 G-l~~-------~~~~VlVIaATNrP-------------------------d~LDpALlRRFDr~I~IplPd~GySGADL 577 (646)
. .-. .-.+++||+|||.- ..+.|.++.|+|.+|.|++.+ ..++
T Consensus 583 ~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~----~~~l 658 (758)
T PRK11034 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS----TDVI 658 (758)
T ss_pred cCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCC----HHHH
Confidence 3 211 11478999999932 236688888999999988754 4566
Q ss_pred HHHHHH
Q 006411 578 KNLVKE 583 (646)
Q Consensus 578 ~~Lc~e 583 (646)
..++..
T Consensus 659 ~~I~~~ 664 (758)
T PRK11034 659 HQVVDK 664 (758)
T ss_pred HHHHHH
Confidence 666543
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0004 Score=80.50 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=80.3
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+.+|++|+|.+.+++.|..++.. +....++||||||+.++...++.+-...-+.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 345678999999999999999988865 1124579999999444444444333332221
Q ss_pred ------------CCeeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 472 ------------QPAVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 472 ------------aPsIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|.++.+ |+|..+... +...++.+..+...- +.-+.-.....+.||..|+.
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~------a~~~p~~~~~KViII---DEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIER------AQFAPVQARWKVYVI---DECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHH------HhhChhcCCceEEEE---ECccccCHHHHHHHHHHHhc
Confidence 1223222 222222210 000000010000000 01111223467889999986
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.. ..+++|++|+.++.|-+.|++|+. ++.|+.++
T Consensus 148 Pp---~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~ 181 (620)
T PRK14948 148 PP---PRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIP 181 (620)
T ss_pred CC---cCeEEEEEeCChhhhhHHHHhhee-EEEecCCC
Confidence 43 467777888889999999988884 46776664
No 121
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.60 E-value=0.001 Score=79.20 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=49.2
Q ss_pred HHHHHHHHHhh--hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC
Q 006411 459 KLVRALFGVAS--CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS 536 (646)
Q Consensus 459 k~Vr~lF~~Ar--~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~ 536 (646)
..+..+|.... .....||+|||||.|.. .. +.++-.|+.... . ..
T Consensus 854 evLerLF~~L~k~~r~v~IIILDEID~L~k---------------------K~---------QDVLYnLFR~~~-~--s~ 900 (1164)
T PTZ00112 854 KILDRLFNQNKKDNRNVSILIIDEIDYLIT---------------------KT---------QKVLFTLFDWPT-K--IN 900 (1164)
T ss_pred HHHHHHHhhhhcccccceEEEeehHhhhCc---------------------cH---------HHHHHHHHHHhh-c--cC
Confidence 34555565542 23456899999998865 11 234444444322 2 23
Q ss_pred CcEEEEEecCC---CCcCCHHHHhcccc-EEEeCCCCC
Q 006411 537 EQILLVGATNR---PQELDEAARRRLTK-RLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNr---Pd~LDpALlRRFDr-~I~IplPd~ 570 (646)
.+|+|||+||. |+.|+|.++.||.. +|.|++++.
T Consensus 901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTa 938 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKG 938 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCH
Confidence 57999999996 67788988888764 366666553
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0004 Score=79.98 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=86.1
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+-+|+||+|.+.+++.|+.++.. +..+..+||||||+.++....+.+-....+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 456678999999999999999988754 2345789999999444444444333322211
Q ss_pred ------------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 472 ------------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 472 ------------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.+.++.||- |..|.. .+...++.+..+..-- +.-|.-+....+.||..|+.
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~------~~~~~P~~~~~KVvII---DEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRD------RAFYAPAQSRYRIFIV---DEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHH------HHHhhhhcCCceEEEE---ECCCcCCHHHHHHHHHHHhc
Confidence 133555443 222211 0000011111111110 11233344578889998887
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. ..+++|++|+.+..|-++|++|. .++.|..++.
T Consensus 145 pp---~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~ 179 (584)
T PRK14952 145 PP---EHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPP 179 (584)
T ss_pred CC---CCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCH
Confidence 54 47888888899999999999986 5677777653
No 123
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0012 Score=75.84 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=85.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+-+|+||+|.+.+++.|+..+.. +..+..+||||||+.+....++.+-+..-+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456788999999999999999888854 2345789999999555555554444333221
Q ss_pred ----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHHc
Q 006411 472 ----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 472 ----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eLD 530 (646)
.|.++.||. |-.+... . ....+.+.+. -+.-+..+....+.||..|+
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~------~------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE 144 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEE------I------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE 144 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHH------H------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc
Confidence 133454442 2122110 0 0000001110 01122334456788888887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. ...+++|++|+.++.|.+++++|+. .+.|.+|+.
T Consensus 145 ep---p~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~ 180 (563)
T PRK06647 145 EP---PPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSL 180 (563)
T ss_pred cC---CCCEEEEEecCChHHhHHHHHHhce-EEEecCCCH
Confidence 53 3467888888889999999999986 467777643
No 124
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.00056 Score=78.98 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=81.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+-+|+||+|.+.+++.|...+.. +..+.++||||||+.++....+.+-+...+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 345678999999999999999887753 3456899999999333333333332222111
Q ss_pred ---------------CCeeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 472 ---------------QPAVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 472 ---------------aPsIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
.|.++.| |+|-.|... +...+++...+..-- +.-+..+....+.||..
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~------~~~~P~~a~~KVvII---DEad~Ls~~a~naLLKt 155 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES------VRYRPVSARYKVYII---DEVHMLSTAAFNALLKT 155 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH------HHhchhcCCcEEEEE---EChHhCCHHHHHHHHHH
Confidence 1223332 233333220 000011110000000 01122223457888888
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+.... .+++|++|+.++.|-+.+++|+ .++.|..|+.
T Consensus 156 LEePp~---~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~ 193 (598)
T PRK09111 156 LEEPPP---HVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEA 193 (598)
T ss_pred HHhCCC---CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCH
Confidence 877543 5777778888888989988888 4678888764
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.53 E-value=0.00098 Score=77.24 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=83.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.++.+.+|+||+|.+.+++.|...+.. +..+..+|||||++.+... +..+|..+-.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt-~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTT-CARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHH-HHHHHHHHhCCCCCCCCCCCCC
Confidence 456679999999999999999888753 2346789999999333333 5555554321
Q ss_pred -----------cCCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHH
Q 006411 471 -----------RQPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 471 -----------~aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~e 528 (646)
..+.++.|| +|..+... .....+.+.++- +.-+.-+....+.||..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~------------~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~ 144 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQ------------VRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKT 144 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHH------------HhhCcccCCcEEEEEECcccCCHHHHHHHHHH
Confidence 124444443 33333210 000001111110 11122234467889988
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+.... .+++|++|+.+..|-++|++|+.. +.|..++.
T Consensus 145 LEepp~---~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~ 182 (614)
T PRK14971 145 LEEPPS---YAIFILATTEKHKILPTILSRCQI-FDFNRIQV 182 (614)
T ss_pred HhCCCC---CeEEEEEeCCchhchHHHHhhhhe-eecCCCCH
Confidence 887643 456667777778999999998744 67777654
No 126
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00067 Score=71.60 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=80.8
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----cCCeeeeehhhhH
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-----RQPAVIFVDEIDS 483 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-----~aPsIIFIDEIDs 483 (646)
+|+||.|.+.+++.|...+.. +..+..+|||||++-+....++.+-....+ ..|.+..+.-.|.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 699999999999999888733 345678999999944444444444333222 2345533322100
Q ss_pred Hhhhcccccccchhhhhhh----hhhccccCC---CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHH
Q 006411 484 LLSQMLPYMHVHHIKLFCL----KRFYFQRKS---DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAAR 556 (646)
Q Consensus 484 L~~k~~~~~~~~~~~~~~~----kr~~~~R~s---~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALl 556 (646)
......++...|. ..+.+.++- ...+..+....|.||..|+... +++++|.+|+.|+.|-|.++
T Consensus 71 ------~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp---~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 71 ------KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP---KGVFIILLCENLEQILDTIK 141 (313)
T ss_pred ------CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC---CCeEEEEEeCChHhCcHHHH
Confidence 0000111111111 111111110 1112223456788998888643 46677777788999999999
Q ss_pred hccccEEEeCCCCC
Q 006411 557 RRLTKRLYIPLPSS 570 (646)
Q Consensus 557 RRFDr~I~IplPd~ 570 (646)
+|.. .++|+.|+.
T Consensus 142 SRc~-~~~~~~~~~ 154 (313)
T PRK05564 142 SRCQ-IYKLNRLSK 154 (313)
T ss_pred hhce-eeeCCCcCH
Confidence 9984 778887754
No 127
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.41 E-value=0.001 Score=64.67 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
..+.||..|+... +.+++|++||.+..|.+++++|+. .+.+++|+. .++...+..
T Consensus 112 ~~~~Ll~~le~~~---~~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~~~----~~~~~~l~~ 166 (188)
T TIGR00678 112 AANALLKTLEEPP---PNTLFILITPSPEKLLPTIRSRCQ-VLPFPPLSE----EALLQWLIR 166 (188)
T ss_pred HHHHHHHHhcCCC---CCeEEEEEECChHhChHHHHhhcE-EeeCCCCCH----HHHHHHHHH
Confidence 4567888887643 356777778888999999999984 778887753 666655544
No 128
>PRK06893 DNA replication initiation factor; Validated
Probab=97.41 E-value=0.0012 Score=66.93 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=72.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh--------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-------------- 469 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-------------- 469 (646)
..+..+|++++|-+... +...+.. .+.. .....++|||||+.++...++++-..+.
T Consensus 9 ~~~~~~fd~f~~~~~~~--~~~~~~~------~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL--LLDSLRK------NFID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH--HHHHHHH------Hhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 45678889888644321 1111111 1111 1224689999996666666666544321
Q ss_pred ----------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcE
Q 006411 470 ----------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539 (646)
Q Consensus 470 ----------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~V 539 (646)
..+..+|+||||+.+.. .+ . .... |...++........+
T Consensus 79 ~~~~~~~~~~~~~~dlLilDDi~~~~~---------------------~~------~-~~~~---l~~l~n~~~~~~~~i 127 (229)
T PRK06893 79 QYFSPAVLENLEQQDLVCLDDLQAVIG---------------------NE------E-WELA---IFDLFNRIKEQGKTL 127 (229)
T ss_pred hhhhHHHHhhcccCCEEEEeChhhhcC---------------------Ch------H-HHHH---HHHHHHHHHHcCCcE
Confidence 11456899999998864 11 1 1122 333333333222346
Q ss_pred EEEEecCCCCcCC---HHHHhcc--ccEEEeCCCCC
Q 006411 540 LLVGATNRPQELD---EAARRRL--TKRLYIPLPSS 570 (646)
Q Consensus 540 lVIaATNrPd~LD---pALlRRF--Dr~I~IplPd~ 570 (646)
+|++++..|..++ +.+.+|+ ...+.++.|+.
T Consensus 128 llits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 128 LLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred EEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 6677777788776 8888865 57888999986
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.39 E-value=0.0018 Score=76.30 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred hhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---C-----CCCcE
Q 006411 468 ASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD---S-----GSEQI 539 (646)
Q Consensus 468 Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~---~-----~~~~V 539 (646)
.+....+||||||||.+-+ .+.+.||..||.-. . .-.++
T Consensus 549 ~~~~p~~VvllDEieka~~---------------------------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 549 VRKHPHCVLLLDEIEKAHP---------------------------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHhCCCeEEEEechhhcCH---------------------------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 3445567999999996643 25677777777431 0 12468
Q ss_pred EEEEecCCCC-------------------------cCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 540 LLVGATNRPQ-------------------------ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 540 lVIaATNrPd-------------------------~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
+||+|||... .+.|.++.|||..|.|.+ ++..++..+++....
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~p----Ls~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNP----LSEEVLEKIVQKFVD 663 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCC----CCHHHHHHHHHHHHH
Confidence 8999998742 256778889999888877 466999999976654
No 130
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.37 E-value=0.0012 Score=77.75 Aligned_cols=128 Identities=24% Similarity=0.326 Sum_probs=78.4
Q ss_pred CCCCcccccccChHHHHH---HHHHHHHhhccCccccccCCCCCccccccCCCCchHHHH--------------------
Q 006411 404 RDPHVRWDDIAGLEHAKK---CVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKL-------------------- 460 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~---~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~-------------------- 460 (646)
+..+-+|+|++|.+++.. .|+..+.. . ....+||||||+.++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-----------~-~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-----------D-RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-----------C-CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 344688999999999875 45554432 1 124789999993333322
Q ss_pred ----HHHHHHHhhh-----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 461 ----VRALFGVASC-----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 461 ----Vr~lF~~Ar~-----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
++.+++.+.. ....||||||||.+.. ...+.|+..++.
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------------------------------~qQdaLL~~lE~ 135 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------------------------------AQQDALLPWVEN 135 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------------------------------HHHHHHHHHhcC
Confidence 3333333321 2456899999998743 012334444432
Q ss_pred CCCCCCcEEEEEecCC-C-CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 532 FDSGSEQILLVGATNR-P-QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 532 l~~~~~~VlVIaATNr-P-d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
..|++|++|.. | ..+++++++|. ..+.++.++. .|+..+++.++.
T Consensus 136 -----g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~----edi~~IL~~~l~ 182 (725)
T PRK13341 136 -----GTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSD----EDLHQLLKRALQ 182 (725)
T ss_pred -----ceEEEEEecCCChHhhhhhHhhccc-cceecCCCCH----HHHHHHHHHHHH
Confidence 35777776643 3 46899999986 4577887764 677777766553
No 131
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.36 E-value=0.0044 Score=63.18 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=71.4
Q ss_pred CCCCccccccc-C-hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcC---------
Q 006411 404 RDPHVRWDDIA-G-LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQ--------- 472 (646)
Q Consensus 404 ~~p~VsfdDIg-G-le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a--------- 472 (646)
-.+..+|++.. | -..+...|+..+..+ ....++|||||+.++...++.+...+....
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~~------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQE------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 45567788766 4 444556665544221 124799999996666667766665443211
Q ss_pred ---------------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 473 ---------------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 473 ---------------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
-.+|+||||+.+.. + .. ....+-.+++.+ .. .+
T Consensus 83 ~~~~~~~~~~~~~~~~dlliiDdi~~~~~---------------------~------~~-~~~~lf~l~n~~---~e-~g 130 (235)
T PRK08084 83 KRAWFVPEVLEGMEQLSLVCIDNIECIAG---------------------D------EL-WEMAIFDLYNRI---LE-SG 130 (235)
T ss_pred HHhhhhHHHHHHhhhCCEEEEeChhhhcC---------------------C------HH-HHHHHHHHHHHH---HH-cC
Confidence 23678888887743 1 11 112233333332 11 12
Q ss_pred c-EEEEEecCCCCc---CCHHHHhccc--cEEEeCCCCC
Q 006411 538 Q-ILLVGATNRPQE---LDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 538 ~-VlVIaATNrPd~---LDpALlRRFD--r~I~IplPd~ 570 (646)
+ -+|+.+++.|.. +.|.|++|+. ..+.+..|+.
T Consensus 131 ~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~ 169 (235)
T PRK08084 131 RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSD 169 (235)
T ss_pred CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCH
Confidence 3 355555555555 6899999996 7888888874
No 132
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.35 E-value=0.0013 Score=71.61 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC 470 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~ 470 (646)
.+...|++|+|.+++|..|.-.+..|- ..||||+||++.++...+|.+.+.+..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 556789999999999999877766631 368999999988888888988887754
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0013 Score=76.57 Aligned_cols=118 Identities=23% Similarity=0.365 Sum_probs=75.4
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------------------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------------------------- 453 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------------------------------------- 453 (646)
|=-||+++|+.|.|++.--...+.+ ...=++|+|||
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKL------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccC------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 4578999999999988763322221 11236789999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
+|...-.|=.-...|....| ++++||||.+.. .- .++. .+.||.-||-
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---------------------s~--rGDP------aSALLEVLDP 447 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---------------------SF--RGDP------ASALLEVLDP 447 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccC---------------------CC--CCCh------HHHHHhhcCH
Confidence 33333344444566666667 777999999976 11 1222 1344544442
Q ss_pred CCC------------CCCcEEEEEecCCCCcCCHHHHhccccEEEeC
Q 006411 532 FDS------------GSEQILLVGATNRPQELDEAARRRLTKRLYIP 566 (646)
Q Consensus 532 l~~------------~~~~VlVIaATNrPd~LDpALlRRFDr~I~Ip 566 (646)
-.. .-.+|++|+|+|..+.|+..|+-|++- |+++
T Consensus 448 EQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEi-I~ls 493 (782)
T COG0466 448 EQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEV-IRLS 493 (782)
T ss_pred hhcCchhhccccCccchhheEEEeecCccccCChHHhcceee-eeec
Confidence 111 113699999999999999999988743 3443
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.34 E-value=0.0027 Score=70.71 Aligned_cols=125 Identities=14% Similarity=0.295 Sum_probs=69.5
Q ss_pred cCCCCccccccc-ChHH--HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh---------
Q 006411 403 DRDPHVRWDDIA-GLEH--AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC--------- 470 (646)
Q Consensus 403 ~~~p~VsfdDIg-Gle~--~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~--------- 470 (646)
...|..+|++.+ |-.. +...+.+.+.. |. . ...++|||||+.++...++.+...+..
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~~------~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKN----PG------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHHhC----cC------C-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 356789999976 5332 33333333322 11 1 245999999955555555544443221
Q ss_pred ---------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 471 ---------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 471 ---------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
..+.+|+|||++.+.. +. ....
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~---------------------~~----------~~q~ 214 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG---------------------KT----------GVQT 214 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC---------------------cH----------HHHH
Confidence 1466777777777654 11 1123
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
+|+..++.+.. ....+||++.+.|..+ ++.+++||. ..+.|.+||.
T Consensus 215 elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 215 ELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred HHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 34444444433 2245666666777764 456666884 5677888985
No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.26 E-value=0.0023 Score=69.13 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCC---------C-CCCcEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFD---------S-GSEQILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~---------~-~~~~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.+.|+.-|+.-. . ...++++|+|+|-.+ .+.++++.||...|.++.|..
T Consensus 141 ~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 141 EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCc
Confidence 4566777787775321 0 124689999988644 599999999999999998864
No 136
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.20 E-value=0.00049 Score=63.30 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.4
Q ss_pred cEEEEEecCCCC----cCCHHHHhcc
Q 006411 538 QILLVGATNRPQ----ELDEAARRRL 559 (646)
Q Consensus 538 ~VlVIaATNrPd----~LDpALlRRF 559 (646)
++.||+|+|... .|++|+++||
T Consensus 114 ~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 114 NFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 489999999999 9999999998
No 137
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.0016 Score=56.60 Aligned_cols=87 Identities=25% Similarity=0.306 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.......++.+++.|+...|.||||||++.+... ... . ...............
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~---------------------~~~-----~-~~~~~~~~~~~~~~~ 112 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDA---------------------EQE-----A-LLLLLEELRLLLLLK 112 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH---------------------HHH-----H-HHHhhhhhHHHHHHH
Confidence 3556778889999999888999999999998751 100 0 000000000011111
Q ss_pred CCCCcEEEEEecCC-CCcCCHHHHhccccEEEeCCC
Q 006411 534 SGSEQILLVGATNR-PQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 534 ~~~~~VlVIaATNr-Pd~LDpALlRRFDr~I~IplP 568 (646)
....+.||+|||. ...++..+.+|++.++.++.+
T Consensus 113 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 113 -SEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred -hcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 1346788899997 455555555599999998765
No 138
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0036 Score=67.98 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+... .++++|..|+.|+.|.|.++.|+ .++.+++|+.
T Consensus 154 ~~~aanaLLk~LEEpp---~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~ 202 (351)
T PRK09112 154 NRNAANAILKTLEEPP---ARALFILISHSSGRLLPTIRSRC-QPISLKPLDD 202 (351)
T ss_pred CHHHHHHHHHHHhcCC---CCceEEEEECChhhccHHHHhhc-cEEEecCCCH
Confidence 3455688999998743 35666667788999999999998 6888888765
No 139
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.0043 Score=66.31 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=80.2
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh---------------hhcCC
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA---------------SCRQP 473 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A---------------r~~aP 473 (646)
.|++|.|.+.+++.|...+.. +..+..+|||||++.+.......+-... ....|
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999998855 2335799999999433333333322222 12246
Q ss_pred eeeeeh-------------------------------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhH
Q 006411 474 AVIFVD-------------------------------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSR 519 (646)
Q Consensus 474 sIIFID-------------------------------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~ 519 (646)
.+++++ +|..|.. ....+.+.+.++- ...+....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~------------~l~~~p~~~~~kVvII~~ae~m~~ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKR------------FLSRPPLEAPRKVVVIEDAETMNE 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHH------------HHccCcccCCceEEEEEchhhcCH
Confidence 666543 3333322 1111111111110 11122234
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...|.||..|+... +.++|..|+.|+.|-|.+++|. ..|.|+.|+.
T Consensus 139 ~aaNaLLK~LEEPp----~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~ 184 (314)
T PRK07399 139 AAANALLKTLEEPG----NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSD 184 (314)
T ss_pred HHHHHHHHHHhCCC----CCeEEEEECChHhCcHHHHhhc-eEEecCCCCH
Confidence 56788999998753 2356677789999999999997 5567877654
No 140
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.98 E-value=0.0039 Score=68.16 Aligned_cols=114 Identities=26% Similarity=0.374 Sum_probs=73.4
Q ss_pred CCCcccccccChHHHHHH---HHHHHHhhccCccccccCCCCCccccccCCC---------------------------C
Q 006411 405 DPHVRWDDIAGLEHAKKC---VMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------I 454 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~---L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------v 454 (646)
-.+-+++|++|.+++..+ |+..|.. .+ ...++|+||| .
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq----------~~--ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ----------NR--IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc----------CC--CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 346788999998887644 2222211 11 2578999999 3
Q ss_pred chHHHHHHHHHHHhhhc-----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 455 GEGEKLVRALFGVASCR-----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 455 Gesek~Vr~lF~~Ar~~-----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
..+.+-+|.+|+.|+.. ...|||||||..+-. +.. ..||-
T Consensus 200 ~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------------------sQQ---------D~fLP-- 244 (554)
T KOG2028|consen 200 NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------------------SQQ---------DTFLP-- 244 (554)
T ss_pred ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------------------hhh---------hcccc--
Confidence 34456789999999754 578999999998743 111 11221
Q ss_pred cCCCCCCCcEEEEEecC--CCCcCCHHHHhccccEEEeCCC
Q 006411 530 EGFDSGSEQILLVGATN--RPQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 530 DGl~~~~~~VlVIaATN--rPd~LDpALlRRFDr~I~IplP 568 (646)
-+. .+.|++||||. --..|..||+.|+-..+.-++|
T Consensus 245 -~VE--~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 245 -HVE--NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred -eec--cCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 111 34677887763 3446999999988666655665
No 141
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.97 E-value=0.014 Score=67.83 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=46.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------ 453 (646)
..|..-|++|.|.+++++.|+..+.. .+.++|+|||
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~ 76 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPE 76 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCC
Confidence 35667789999999999998887764 2478889999
Q ss_pred -----------CchHHHHHHHHHHHhhhcCCe
Q 006411 454 -----------IGEGEKLVRALFGVASCRQPA 474 (646)
Q Consensus 454 -----------vGesek~Vr~lF~~Ar~~aPs 474 (646)
.+.+++.++..|..|++..|+
T Consensus 77 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 77 DPNMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred CCchHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 667788999999999888776
No 142
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.015 Score=63.64 Aligned_cols=128 Identities=14% Similarity=0.307 Sum_probs=79.9
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------------- 471 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------------- 471 (646)
+.+.+=++.++.|...+...+. +..|..+++||||+.++...++.+++.....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 4588888888888877655332 2234569999999444444444444433222
Q ss_pred ----------------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchh
Q 006411 472 ----------------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHES 517 (646)
Q Consensus 472 ----------------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~ 517 (646)
...||++||+|.|.. .. +
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~---------------------~~---~---- 140 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD---------------------KD---G---- 140 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc---------------------cc---c----
Confidence 344888999999976 11 1
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc-cEEEeCCCCCCCcHHHHHHHHHH
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT-KRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD-r~I~IplPd~GySGADL~~Lc~e 583 (646)
.++-+|+...+.. .-+|.||+.+|..+ .|||.+.++|- ..|.||+ |+..+|..++.+
T Consensus 141 --~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~p----Y~a~el~~Il~~ 201 (366)
T COG1474 141 --EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPP----YTAEELYDILRE 201 (366)
T ss_pred --hHHHHHHhhcccc---ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCC----CCHHHHHHHHHH
Confidence 3455555544444 34799999999875 78888888653 4456665 444444444433
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.94 E-value=0.012 Score=61.08 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=26.8
Q ss_pred cEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 538 QILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 538 ~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.||+|+|... .+++|+++|| ..++++.|+.
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~ 187 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDI 187 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCH
Confidence 567999999763 6799999999 5789999986
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.006 Score=72.20 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
-|+-|..++.+.+..+...+.|+|||||+.|.+ -....++.-....++.-.|
T Consensus 244 RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVG---------------------AG~~~G~a~DAaNiLKPaL------- 295 (786)
T COG0542 244 RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVG---------------------AGATEGGAMDAANLLKPAL------- 295 (786)
T ss_pred cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcC---------------------CCcccccccchhhhhHHHH-------
Confidence 788999999999999988899999999999987 2212121111222333222
Q ss_pred CCCCcEEEEEecCC-----CCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNR-----PQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNr-----Pd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+-+||||.. .-.-|+||-|||.. |++.-|+.
T Consensus 296 -ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~ 335 (786)
T COG0542 296 -ARGELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSV 335 (786)
T ss_pred -hcCCeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCH
Confidence 1456788888875 33679999999976 58999986
No 145
>PRK08727 hypothetical protein; Validated
Probab=96.86 E-value=0.017 Score=58.75 Aligned_cols=103 Identities=24% Similarity=0.275 Sum_probs=57.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhhc------------------------CCeeeeehhhhHHhhhcccccccchhhhh
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASCR------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLF 500 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~~------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~ 500 (646)
..++||||++.++...++.+-..+... +..+|+|||||.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~-------------- 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAG-------------- 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccC--------------
Confidence 459999999666666666654444333 234667777766543
Q ss_pred hhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhcc--ccEEEeCCCCCCCcHH
Q 006411 501 CLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRL--TKRLYIPLPSSGYSGS 575 (646)
Q Consensus 501 ~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRF--Dr~I~IplPd~GySGA 575 (646)
.+ . ....+-.+++.+. . ...-+|+.+...|..+ ++++++|| -..+.++.|+. .
T Consensus 108 -------~~------~-~~~~lf~l~n~~~---~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~----e 165 (233)
T PRK08727 108 -------QR------E-DEVALFDFHNRAR---A-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD----V 165 (233)
T ss_pred -------Ch------H-HHHHHHHHHHHHH---H-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH----H
Confidence 11 1 1122233444442 2 1122444444466655 79999997 55677787764 4
Q ss_pred HHHHHHHH
Q 006411 576 DMKNLVKE 583 (646)
Q Consensus 576 DL~~Lc~e 583 (646)
++..+++.
T Consensus 166 ~~~~iL~~ 173 (233)
T PRK08727 166 ARAAVLRE 173 (233)
T ss_pred HHHHHHHH
Confidence 55555543
No 146
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.012 Score=64.19 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..++... .++++|.+|+.|+.|.|.+++|+. +|.|+.|+.
T Consensus 154 ~~~aanaLLK~LEepp---~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~ 202 (365)
T PRK07471 154 NANAANALLKVLEEPP---ARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAP 202 (365)
T ss_pred CHHHHHHHHHHHhcCC---CCeEEEEEECCchhchHHhhccce-EEECCCCCH
Confidence 3456788888887643 367888899999999999988874 567777754
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.84 E-value=0.013 Score=70.42 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=81.7
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCcc-ccccCCCCchHHHHHHH------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKG-LLLFGPPIGEGEKLVRA------------------------ 463 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprG-VLLyGPPvGesek~Vr~------------------------ 463 (646)
..|+|.+++++.|.+.|..... ++. ..|.| +||+|||+.++....+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 3678899999999888876321 121 22455 79999993322222221
Q ss_pred --------------------HHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 464 --------------------LFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 464 --------------------lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+.+..+....+||+|||||..-+ .+.+
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~---------------------------------~v~~ 686 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP---------------------------------DVLE 686 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH---------------------------------HHHH
Confidence 12233445667888888875422 3556
Q ss_pred HHHHHHcCCC--C------CCCcEEEEEecCCCC-----------------------------cCCHHHHhccccEEEeC
Q 006411 524 QFLIEMEGFD--S------GSEQILLVGATNRPQ-----------------------------ELDEAARRRLTKRLYIP 566 (646)
Q Consensus 524 eLL~eLDGl~--~------~~~~VlVIaATNrPd-----------------------------~LDpALlRRFDr~I~Ip 566 (646)
.|+..||.-. . .-.+.+||+|||... .+.|+++.|++ .|.|.
T Consensus 687 ~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~ 765 (852)
T TIGR03345 687 LFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYL 765 (852)
T ss_pred HHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeC
Confidence 6666665321 0 114689999999622 14466666887 44444
Q ss_pred CCCCCCcHHHHHHHHHHHhhhHHH
Q 006411 567 LPSSGYSGSDMKNLVKEASMGPLR 590 (646)
Q Consensus 567 lPd~GySGADL~~Lc~eAa~~Air 590 (646)
+ ++..+|..++..+...-..
T Consensus 766 p----Ls~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 766 P----LDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred C----CCHHHHHHHHHHHHHHHHH
Confidence 3 3779999999876644333
No 148
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.013 Score=62.92 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=79.9
Q ss_pred ccccccC-hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----------------
Q 006411 409 RWDDIAG-LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC----------------- 470 (646)
Q Consensus 409 sfdDIgG-le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~----------------- 470 (646)
.|+.|.| .+.+++.|+..+.. +..+..+|||||++-......+.+-...-+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888888 88899988887643 345688999999943333333333222211
Q ss_pred ----cCCeeeee---------hhhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHcCCCC
Q 006411 471 ----RQPAVIFV---------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 471 ----~aPsIIFI---------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLDGl~~ 534 (646)
.-|.+.++ |+|-.+... +....+.+.++- +..+..+....|.||..|+...
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~------------~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp- 138 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEE------------FSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS- 138 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHH------------HhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-
Confidence 13556555 344333320 000001111110 1112234456788999988754
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+++|.+|+.+..|-|++++|.- .++|+.|+.
T Consensus 139 --~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~ 171 (329)
T PRK08058 139 --GGTTAILLTENKHQILPTILSRCQ-VVEFRPLPP 171 (329)
T ss_pred --CCceEEEEeCChHhCcHHHHhhce-eeeCCCCCH
Confidence 467777888899999999999884 457777754
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.75 E-value=0.031 Score=64.97 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEecCCC----CcCCHHHHhccc--cEEEeCCCCC
Q 006411 541 LVGATNRP----QELDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 541 VIaATNrP----d~LDpALlRRFD--r~I~IplPd~ 570 (646)
||.|+|++ ..|++.|++||. ..+.|..||.
T Consensus 413 IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 34466664 357899999985 5557888885
No 150
>PRK06620 hypothetical protein; Validated
Probab=96.75 E-value=0.017 Score=58.33 Aligned_cols=131 Identities=12% Similarity=0.175 Sum_probs=74.0
Q ss_pred cCCCCcccccccChH---HHHHHHHHHHHhhccCccccccCCCC-CccccccCCCCchHHHHHHHHHHHhh---------
Q 006411 403 DRDPHVRWDDIAGLE---HAKKCVMEMVIWPLLRPDIFKGCRSP-GKGLLLFGPPIGEGEKLVRALFGVAS--------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle---~~K~~L~E~V~lPL~~pelf~~~~~P-prGVLLyGPPvGesek~Vr~lF~~Ar--------- 469 (646)
...|..+|++++--+ .+...++++...| . ..| .+.++|||||+.++...++.+-..+.
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----~-----~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~ 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF----G-----VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFF 78 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc----c-----cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhh
Confidence 346677888865433 3555555544321 0 122 26799999996666666664322211
Q ss_pred ----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEec
Q 006411 470 ----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 470 ----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaAT 545 (646)
.....+++|||||.+- ...+-.+++.+. . .+..+||++|
T Consensus 79 ~~~~~~~~d~lliDdi~~~~---------------------------------~~~lf~l~N~~~---e-~g~~ilits~ 121 (214)
T PRK06620 79 NEEILEKYNAFIIEDIENWQ---------------------------------EPALLHIFNIIN---E-KQKYLLLTSS 121 (214)
T ss_pred chhHHhcCCEEEEeccccch---------------------------------HHHHHHHHHHHH---h-cCCEEEEEcC
Confidence 0123467777777321 112233333333 3 3457788888
Q ss_pred CCCCc--CCHHHHhccc--cEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 546 NRPQE--LDEAARRRLT--KRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 546 NrPd~--LDpALlRRFD--r~I~IplPd~GySGADL~~Lc~eA 584 (646)
..|.. | |+|+.|+. ..+.+..|+. .++..+++.+
T Consensus 122 ~~p~~l~l-~~L~SRl~~gl~~~l~~pd~----~~~~~~l~k~ 159 (214)
T PRK06620 122 DKSRNFTL-PDLSSRIKSVLSILLNSPDD----ELIKILIFKH 159 (214)
T ss_pred CCccccch-HHHHHHHhCCceEeeCCCCH----HHHHHHHHHH
Confidence 77775 6 78888986 3578888875 4455555443
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.68 E-value=0.015 Score=69.50 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHH---------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRA--------------------------- 463 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~--------------------------- 463 (646)
..|.|.+++++.|...+...... + ....+|...+||+|||+.++....+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g--l-~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG--L-KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc--c-cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46789999999998888652210 0 01123334589999992222222221
Q ss_pred -----------------HHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 464 -----------------LFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 464 -----------------lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
+.+..+....+||||||||.+-+ .+.+.||
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------------------------~v~~~Ll 632 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------------------------DIFNLLL 632 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------------------------HHHHHHH
Confidence 22333333347888899886533 3567777
Q ss_pred HHHcCCC--C------CCCcEEEEEecCCCCc-------------------------------------CCHHHHhcccc
Q 006411 527 IEMEGFD--S------GSEQILLVGATNRPQE-------------------------------------LDEAARRRLTK 561 (646)
Q Consensus 527 ~eLDGl~--~------~~~~VlVIaATNrPd~-------------------------------------LDpALlRRFDr 561 (646)
..||.-. . .-.+.+||+|||.... +.|.++.|+|.
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ 712 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDE 712 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCe
Confidence 7777411 0 1246899999996421 12456668988
Q ss_pred EEEeCCCCCCCcHHHHHHHHHHHhhhHHHH
Q 006411 562 RLYIPLPSSGYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 562 ~I~IplPd~GySGADL~~Lc~eAa~~Airr 591 (646)
+|.|.+. +..+|..+++.+...-..+
T Consensus 713 ii~F~pL----~~~~l~~Iv~~~l~~l~~r 738 (821)
T CHL00095 713 IIVFRQL----TKNDVWEIAEIMLKNLFKR 738 (821)
T ss_pred EEEeCCC----CHHHHHHHHHHHHHHHHHH
Confidence 8777663 6699999987766544333
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.67 E-value=0.02 Score=68.84 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=28.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHH
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKL 460 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~ 460 (646)
..|.|.+.+.+.|.+.+...... .....+|...+||+|||+.++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHH
Confidence 46888999999988888763210 000113445689999994333333
No 153
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.65 E-value=0.014 Score=56.39 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCC
Q 006411 517 SSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 517 ~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~Ipl 567 (646)
.+....|.||..|+.... ++++|.+|+.++.|-|.+++|.-. |.|+.
T Consensus 114 l~~~a~NaLLK~LEepp~---~~~fiL~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 114 LTEEAQNALLKTLEEPPE---NTYFILITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp S-HHHHHHHHHHHHSTTT---TEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred hhHHHHHHHHHHhcCCCC---CEEEEEEECChHHChHHHHhhceE-EecCC
Confidence 345678999999998654 789999999999999999998733 34443
No 154
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0053 Score=69.84 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=83.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------CCee
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------QPAV 475 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------aPsI 475 (646)
..++.+-+|+|+.|.+.+...|...+.. .+-..++||.||- |-+...+..+|..|-.+ .||.
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~R-GvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPR-GVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCC-CcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 4567788999999999999999998866 2234789999998 55555556666655322 2331
Q ss_pred ee-----------e--hhhhHHhhhcccccccchhhhhhhhhhccccCC-------CCCchhhHHHHHHHHHHHcCCCCC
Q 006411 476 IF-----------V--DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-------DGEHESSRRLKTQFLIEMEGFDSG 535 (646)
Q Consensus 476 IF-----------I--DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-------~~~~e~s~rilneLL~eLDGl~~~ 535 (646)
-. + =|||+.-.+ ++..++..-.+-.+..-.+ +.-|--+....|.||..|+.-
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~-----gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP--- 146 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNT-----GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP--- 146 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhcc-----ChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC---
Confidence 11 0 022222110 1111111111100000000 222334566788888877764
Q ss_pred CCcEEEEEecCCCCcCCHHHHhcccc
Q 006411 536 SEQILLVGATNRPQELDEAARRRLTK 561 (646)
Q Consensus 536 ~~~VlVIaATNrPd~LDpALlRRFDr 561 (646)
-..|++|.||..|+.|.+.+++|+-+
T Consensus 147 P~hV~FIlATTe~~Kip~TIlSRcq~ 172 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILSRCQR 172 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhhcccc
Confidence 34899999999999999999996543
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.62 E-value=0.033 Score=59.58 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 462 RALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 462 r~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..+....+..++-+|+|||+..++.
T Consensus 135 ~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 135 QQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHHHHHHHcCCcEEEeechHHHhc
Confidence 3345566777899999999999875
No 156
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.0041 Score=67.41 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.- .+++++|.+|++|+.|.|.+++|+ ..|.|++|+.
T Consensus 145 ~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~ 193 (342)
T PRK06964 145 NVAAANALLKTLEEP---PPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAP 193 (342)
T ss_pred CHHHHHHHHHHhcCC---CcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCH
Confidence 345569999999864 457899999999999999999999 5788888864
No 157
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.50 E-value=0.011 Score=57.82 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=39.2
Q ss_pred eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC--------CCCcEEEEEecC
Q 006411 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS--------GSEQILLVGATN 546 (646)
Q Consensus 475 IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~--------~~~~VlVIaATN 546 (646)
||||||||.+.+ . .+.+.+.....+.+.||..||+-.= ...++++|+|||
T Consensus 71 VVllDEidKa~~---------------------~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn 128 (171)
T PF07724_consen 71 VVLLDEIDKAHP---------------------S-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSN 128 (171)
T ss_dssp EEEEETGGGCSH---------------------T-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEES
T ss_pred hhhhHHHhhccc---------------------c-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecc
Confidence 999999999976 2 3444555566788999998874320 135799999999
Q ss_pred CCCc
Q 006411 547 RPQE 550 (646)
Q Consensus 547 rPd~ 550 (646)
--..
T Consensus 129 ~~~~ 132 (171)
T PF07724_consen 129 FGAE 132 (171)
T ss_dssp SSTH
T ss_pred cccc
Confidence 7553
No 158
>PRK05642 DNA replication initiation factor; Validated
Probab=96.49 E-value=0.043 Score=56.02 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred cCCCCccccccc-ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCe-------
Q 006411 403 DRDPHVRWDDIA-GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPA------- 474 (646)
Q Consensus 403 ~~~p~VsfdDIg-Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPs------- 474 (646)
...|..+|++.. |-. .....++..+.... ...+...++||||++.++...++.+-..+....-.
T Consensus 11 ~~~~~~tfdnF~~~~~---~~a~~~~~~~~~~~-----~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 11 RLRDDATFANYYPGAN---AAALGYVERLCEAD-----AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCcccccccCcCCh---HHHHHHHHHHhhcc-----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 345677888875 321 22233332221111 11234678999999777777777765544332233
Q ss_pred -----------------eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 475 -----------------VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 475 -----------------IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
+|+||||+.+.. + .....+|...++.+.. .+
T Consensus 83 ~~~~~~~~~~~~~~~~d~LiiDDi~~~~~---------------------~----------~~~~~~Lf~l~n~~~~-~g 130 (234)
T PRK05642 83 ELLDRGPELLDNLEQYELVCLDDLDVIAG---------------------K----------ADWEEALFHLFNRLRD-SG 130 (234)
T ss_pred HHHhhhHHHHHhhhhCCEEEEechhhhcC---------------------C----------hHHHHHHHHHHHHHHh-cC
Confidence 455555554432 0 1122345555555444 34
Q ss_pred cEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 538 QILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 538 ~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
+.+||+++..|..+ .|.+++||. ..+.+..|+.
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence 56777777767544 688888985 5556667653
No 159
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.39 E-value=0.015 Score=61.90 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=37.1
Q ss_pred HHHHHHHHHcC----------CCCCCCcEEEEEecC-----CCCcCCHHHHhccccEEEeCCCCC
Q 006411 521 LKTQFLIEMEG----------FDSGSEQILLVGATN-----RPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDG----------l~~~~~~VlVIaATN-----rPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+.||..|+. +.- ....+||+|+| .-..|.+|+++||.-.++++.|+.
T Consensus 128 ~q~aLl~~l~e~~vtv~~~~~~~~-~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 128 VQNALLEALEERQVTVPGLTTIRL-PPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred HHHHHHHHHhCcEEEECCcCCcCC-CCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCc
Confidence 55666666664 111 35688999999 677899999999999999999954
No 160
>PHA02244 ATPase-like protein
Probab=96.38 E-value=0.016 Score=63.78 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCC-----------CcCCHHHHhccccEEEeCCCCC
Q 006411 536 SEQILLVGATNRP-----------QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 536 ~~~VlVIaATNrP-----------d~LDpALlRRFDr~I~IplPd~ 570 (646)
..++.||+|+|.+ ..|++|++.||- .|++..|+.
T Consensus 219 h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 219 HEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred CCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH
Confidence 3578999999974 578999999995 689998874
No 161
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.37 E-value=0.046 Score=55.40 Aligned_cols=133 Identities=21% Similarity=0.339 Sum_probs=70.6
Q ss_pred CCCccccccc-C--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCC--------
Q 006411 405 DPHVRWDDIA-G--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQP-------- 473 (646)
Q Consensus 405 ~p~VsfdDIg-G--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aP-------- 473 (646)
+|+.||++.+ | -+.+...++.....|- .....++||||++.++...++++...+....|
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 4778999874 4 2334444443333211 11234899999977778888888776654322
Q ss_pred ---------------------------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 474 ---------------------------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 474 ---------------------------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.+|+||+|+.+.. ...+..+|.
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~-------------------------------~~~~q~~lf 120 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG-------------------------------KQRTQEELF 120 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC-------------------------------chHHHHHHH
Confidence 3445555555433 122344555
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhcccc--EEEeCCCCCCCcHHHHHHHHHH
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLTK--RLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFDr--~I~IplPd~GySGADL~~Lc~e 583 (646)
..++.+.. .++.+||.+...|.. +++.|..||.- .+.+..|+. .+...+++.
T Consensus 121 ~l~n~~~~-~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~----~~r~~il~~ 177 (219)
T PF00308_consen 121 HLFNRLIE-SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD----EDRRRILQK 177 (219)
T ss_dssp HHHHHHHH-TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H----HHHHHHHHH
T ss_pred HHHHHHHh-hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH----HHHHHHHHH
Confidence 55555544 334566666566665 56788888865 677777763 454444443
No 162
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.35 E-value=0.027 Score=61.07 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcC---------CCC-CCCcEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEG---------FDS-GSEQILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDG---------l~~-~~~~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+.|+..|+. ... ...++++|+|+|-.+ .|.++++.||.-++.++.|..
T Consensus 145 ~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~ 207 (337)
T TIGR02030 145 DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRD 207 (337)
T ss_pred HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCC
Confidence 3455667766642 111 124688888888555 699999999999999999864
No 163
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.045 Score=59.67 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=52.3
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-------CCCcEEEEEec
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGAT 545 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-------~~~~VlVIaAT 545 (646)
--||||||||.|+. +.+.++..-+-.-+...||-.+.|-.- +++.|++|++-
T Consensus 251 ~GIvFIDEIDKIa~---------------------~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasG 309 (444)
T COG1220 251 NGIVFIDEIDKIAK---------------------RGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASG 309 (444)
T ss_pred cCeEEEehhhHHHh---------------------cCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecC
Confidence 45999999999997 221111111222344567766666431 25679999984
Q ss_pred ----CCCCcCCHHHHhccccEEEeCCCC
Q 006411 546 ----NRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 546 ----NrPd~LDpALlRRFDr~I~IplPd 569 (646)
..|.+|=|.|--||.-++++...+
T Consensus 310 AFh~sKPSDLiPELQGRfPIRVEL~~Lt 337 (444)
T COG1220 310 AFHVAKPSDLIPELQGRFPIRVELDALT 337 (444)
T ss_pred ceecCChhhcChhhcCCCceEEEcccCC
Confidence 569999999999999999998754
No 164
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.042 Score=56.94 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.|+..|.... .+..+|.+||.|+.|=+-+++|.-. +.|++|+.
T Consensus 125 A~nallk~lEep~---~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~ 170 (325)
T COG0470 125 AANALLKTLEEPP---KNTRFILITNDPSKILPTIRSRCQR-IRFKPPSR 170 (325)
T ss_pred HHHHHHHHhccCC---CCeEEEEEcCChhhccchhhhccee-eecCCchH
Confidence 4577887776654 4688999999999999988888744 56766543
No 165
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.09 E-value=0.039 Score=64.37 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHcCC---------C-CCCCcEEEEEecCCC-CcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGF---------D-SGSEQILLVGATNRP-QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl---------~-~~~~~VlVIaATNrP-d~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.+.||..|+.= . ....++.||+|+|-. ..|.++|+.||+-+|.++.|..
T Consensus 139 ~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~ 202 (633)
T TIGR02442 139 DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRD 202 (633)
T ss_pred CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCc
Confidence 345677777777521 1 012468999999843 3689999999999998887753
No 166
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.05 E-value=0.1 Score=59.35 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHc-CC------CCCCCcEEEEEecCCCCc---CCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEME-GF------DSGSEQILLVGATNRPQE---LDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLD-Gl------~~~~~~VlVIaATNrPd~---LDpALlRRFDr~I~IplPd~ 570 (646)
+..+.+.||..|. +. ...-+..++++|||.... ..+|++-||--+|.+|.|+.
T Consensus 120 sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~ 182 (498)
T PRK13531 120 GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQD 182 (498)
T ss_pred CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCc
Confidence 4567788888883 22 111223455666674332 33589999988899999863
No 167
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.05 E-value=0.056 Score=61.51 Aligned_cols=55 Identities=24% Similarity=0.207 Sum_probs=40.7
Q ss_pred CcEEEEEecCCC-----C------------------cCCHHHHhccccEEEeCCCCC--------CCcHHHHHHHHHHHh
Q 006411 537 EQILLVGATNRP-----Q------------------ELDEAARRRLTKRLYIPLPSS--------GYSGSDMKNLVKEAS 585 (646)
Q Consensus 537 ~~VlVIaATNrP-----d------------------~LDpALlRRFDr~I~IplPd~--------GySGADL~~Lc~eAa 585 (646)
.++.+|+|||.- . .|...|+.|||-++.++.++. |-+-+++++-|..|-
T Consensus 337 a~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar 416 (499)
T TIGR00368 337 ARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAR 416 (499)
T ss_pred CCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHH
Confidence 468899999852 1 488889999999999998753 567788887777665
Q ss_pred hhHHHH
Q 006411 586 MGPLRE 591 (646)
Q Consensus 586 ~~Airr 591 (646)
.....|
T Consensus 417 ~~q~~R 422 (499)
T TIGR00368 417 EIQNIR 422 (499)
T ss_pred HHHHHH
Confidence 544443
No 168
>PRK09087 hypothetical protein; Validated
Probab=95.97 E-value=0.063 Score=54.77 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=54.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhh---------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASC---------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~---------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
+-++||||++.++...++.+-..+.. ....+|+|||||.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~----------------------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGF----------------------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCC-----------------------
Confidence 34899999977777877765433211 0123577788775421
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
. . .+|...++.+.. .+..+||+++..|..+ .+.++.||. ..+.+..|+.
T Consensus 102 ----~----~---~~lf~l~n~~~~-~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~ 155 (226)
T PRK09087 102 ----D----E---TGLFHLINSVRQ-AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDD 155 (226)
T ss_pred ----C----H---HHHHHHHHHHHh-CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCH
Confidence 0 1 123333433333 2345666666655533 677888886 7788888875
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.93 E-value=0.066 Score=64.61 Aligned_cols=67 Identities=4% Similarity=0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCC--CC------CCCcEEEEEecCCCC-------------------------cCCHHHHhccccEEEeC
Q 006411 520 RLKTQFLIEMEGF--DS------GSEQILLVGATNRPQ-------------------------ELDEAARRRLTKRLYIP 566 (646)
Q Consensus 520 rilneLL~eLDGl--~~------~~~~VlVIaATNrPd-------------------------~LDpALlRRFDr~I~Ip 566 (646)
.+.+.|+..|+.- .. .-.+.+||+|||... .+.|+++.|+|..+.|.
T Consensus 685 ~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~ 764 (857)
T PRK10865 685 DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFH 764 (857)
T ss_pred HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecC
Confidence 4566777777521 11 123578999999731 24578888999888887
Q ss_pred CCCCCCcHHHHHHHHHHHhhhHHH
Q 006411 567 LPSSGYSGSDMKNLVKEASMGPLR 590 (646)
Q Consensus 567 lPd~GySGADL~~Lc~eAa~~Air 590 (646)
+++. .||..+++........
T Consensus 765 PL~~----edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 765 PLGE----QHIASIAQIQLQRLYK 784 (857)
T ss_pred CCCH----HHHHHHHHHHHHHHHH
Confidence 7664 6888888776654433
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.91 E-value=0.021 Score=61.54 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.-. +++++|.+|+.|+.|-|.+++|+.. +.|++|+.
T Consensus 119 ~~~aaNaLLK~LEEPp---~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~ 167 (328)
T PRK05707 119 NRNAANALLKSLEEPS---GDTVLLLISHQPSRLLPTIKSRCQQ-QACPLPSN 167 (328)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEEECChhhCcHHHHhhcee-eeCCCcCH
Confidence 4567899999998843 4788999999999999999999866 68888764
No 171
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.12 Score=55.80 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.- .+++++|.+|+.|+.|-|.+++|.-. +.|++|+.
T Consensus 121 ~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~~~ 169 (334)
T PRK07993 121 TDAAANALLKTLEEP---PENTWFFLACREPARLLATLRSRCRL-HYLAPPPE 169 (334)
T ss_pred CHHHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHHhcccc-ccCCCCCH
Confidence 345778999999874 45789999999999999999999874 68888864
No 172
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.28 Score=52.97 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..-.|.||..|+.-. .++++|.+|+.|+.|-|.+++|+.. |.|+.|+.
T Consensus 127 ~~AaNaLLKtLEEPp---~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~ 174 (319)
T PRK08769 127 RAACNALLKTLEEPS---PGRYLWLISAQPARLPATIRSRCQR-LEFKLPPA 174 (319)
T ss_pred HHHHHHHHHHhhCCC---CCCeEEEEECChhhCchHHHhhheE-eeCCCcCH
Confidence 456788999888754 4678888899999999999999854 57777764
No 173
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.97 E-value=0.097 Score=56.73 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCC------------cCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATNRPQ------------ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd------------~LDpALlRRFDr~I~IplPd~ 570 (646)
....||+|+|... .|++|++.||-..+.++.|+.
T Consensus 177 p~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~ 222 (327)
T TIGR01650 177 PAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEH 222 (327)
T ss_pred CCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCH
Confidence 4688999999855 468999999998888888875
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=94.92 E-value=0.15 Score=57.98 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.3
Q ss_pred CcEEEEEecCCCC-------------cCCHHHHhccccEEEe-CCCCC
Q 006411 537 EQILLVGATNRPQ-------------ELDEAARRRLTKRLYI-PLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd-------------~LDpALlRRFDr~I~I-plPd~ 570 (646)
.+..||+|+|-.+ .|+++++.|||-.+.+ ..|+.
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~ 389 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDE 389 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCCh
Confidence 4688999999642 6999999999986554 56664
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.37 Score=53.73 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCCCCcccccccC---hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCC------
Q 006411 403 DRDPHVRWDDIAG---LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQP------ 473 (646)
Q Consensus 403 ~~~p~VsfdDIgG---le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aP------ 473 (646)
...|..+|++.+. ..-+.......-..| +.+..=++||||.+.+....++++-..+....|
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y 148 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY 148 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe
Confidence 3567888888653 222333333333332 112345899999977777888888777766655
Q ss_pred ----------------------------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 474 ----------------------------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 474 ----------------------------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.+++||+|+.+.. + .++-.+|
T Consensus 149 ~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g---------------------k----------~~~qeef 197 (408)
T COG0593 149 LTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG---------------------K----------ERTQEEF 197 (408)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC---------------------C----------hhHHHHH
Confidence 2556666666654 1 1123344
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
......+.. .++-+|+.+-..|..| +|.|++||. -.+.+.+||.
T Consensus 198 Fh~FN~l~~-~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 198 FHTFNALLE-NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred HHHHHHHHh-cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 444444444 2334666666667665 488888987 4566788875
No 176
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.79 E-value=0.77 Score=48.37 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=86.0
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh-
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE- 480 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE- 480 (646)
+...+.+.+.+|.|++.+++.|.+.-...+ -+.|-..|||+|-.+.++...|++++.......+.+|=|+-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 355667999999999999999987665533 24567899999999888999999999998888888776643
Q ss_pred -hhHHhhhcccccccchh--hhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHH
Q 006411 481 -IDSLLSQMLPYMHVHHI--KLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEA 554 (646)
Q Consensus 481 -IDsL~~k~~~~~~~~~~--~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpA 554 (646)
|..|-. .+.-+..... -+||+.-.+. +.+. -...|-.-|||=-. ...+|+|-+|+||-..|..-
T Consensus 123 dl~~Lp~-l~~~Lr~~~~kFIlFcDDLSFe------~gd~---~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 123 DLATLPD-LVELLRARPEKFILFCDDLSFE------EGDD---AYKALKSALEGGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred HHhhHHH-HHHHHhcCCceEEEEecCCCCC------CCch---HHHHHHHHhcCCcccCCCeEEEEEecCCcccccHh
Confidence 333221 0000111111 1345432111 1111 22344455675433 45689999999997766643
No 177
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.73 E-value=0.35 Score=56.82 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=32.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP 453 (646)
++..+.+++||+|-++.++.|+.++.. ...+ ..+.+-++|+|||
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~-~~~~------~~~~~illL~GP~ 119 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKA-QVLE------NAPKRILLITGPS 119 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-cccc------cCCCcEEEEECCC
Confidence 456678899999999999998887654 2111 1234569999999
No 178
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.70 E-value=0.23 Score=55.81 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=16.1
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~ 467 (646)
...++||||++.++..+++++-..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~ 164 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY 164 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH
Confidence 457999999955555555555443
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.44 Score=56.97 Aligned_cols=129 Identities=18% Similarity=0.256 Sum_probs=79.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC---CCCccccccCCCCchHHHHHHH----HH------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR---SPGKGLLLFGPPIGEGEKLVRA----LF------------------ 465 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~---~PprGVLLyGPPvGesek~Vr~----lF------------------ 465 (646)
.-|+|.+++...|...|..-- .++. +|-..+||.||.+-++....++ +|
T Consensus 491 ~rViGQd~AV~avs~aIrraR------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 457889999999888886621 2333 4445678889992222222222 22
Q ss_pred ----------------------HHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 466 ----------------------GVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 466 ----------------------~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+..|.+..|||+||||+.-- ..|.+
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH---------------------------------pdV~n 611 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH---------------------------------PDVFN 611 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC---------------------------------HHHHH
Confidence 12233456899999999542 24789
Q ss_pred HHHHHHcCCC--CC------CCcEEEEEecCCCC----------------------------cCCHHHHhccccEEEeCC
Q 006411 524 QFLIEMEGFD--SG------SEQILLVGATNRPQ----------------------------ELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 524 eLL~eLDGl~--~~------~~~VlVIaATNrPd----------------------------~LDpALlRRFDr~I~Ipl 567 (646)
-||+-||.=. .+ =.+.+||||||-=. ..-|.++.|+|.+|.|..
T Consensus 612 ilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~ 691 (786)
T COG0542 612 LLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNP 691 (786)
T ss_pred HHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccC
Confidence 9999888321 11 13589999999621 123445559998888877
Q ss_pred CCCCCcHHHHHHHHH
Q 006411 568 PSSGYSGSDMKNLVK 582 (646)
Q Consensus 568 Pd~GySGADL~~Lc~ 582 (646)
.+. .+|..+|.
T Consensus 692 L~~----~~l~~Iv~ 702 (786)
T COG0542 692 LSK----EVLERIVD 702 (786)
T ss_pred CCH----HHHHHHHH
Confidence 554 55555554
No 180
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=94.43 E-value=0.43 Score=51.82 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=75.2
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------Cc-----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------IG----------- 455 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------vG----------- 455 (646)
...+++-+.+|+++-+++...+.+....+ ..| ..|+|||| .+
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 45677778889999998888888874331 111 66777777 00
Q ss_pred --------hHHHHHHHHHHHhhh-------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 456 --------EGEKLVRALFGVASC-------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 456 --------esek~Vr~lF~~Ar~-------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
...+.=-..|..++. ..+..|++||.|++...
T Consensus 100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~--------------------------------- 146 (360)
T KOG0990|consen 100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD--------------------------------- 146 (360)
T ss_pred hccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH---------------------------------
Confidence 001111234666653 36889999999998640
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplP 568 (646)
.-|+|-..+..+. .++-++.-.|.|..+-||++.||.+-=+=|++
T Consensus 147 AQnALRRviek~t---~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~ 191 (360)
T KOG0990|consen 147 AQNALRRVIEKYT---ANTRFATISNPPQKIHPAQQSRCTRFRFAPLT 191 (360)
T ss_pred HHHHHHHHHHHhc---cceEEEEeccChhhcCchhhcccccCCCCCCC
Confidence 1122222333333 35666677899999999999988775555555
No 181
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.29 Score=53.03 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+....|.||..|+.- .+++++|.+|+.|+.|-|.+++|.-. +.|++|+.
T Consensus 120 ~~~AaNaLLKtLEEP---p~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~ 168 (325)
T PRK06871 120 TEAAANALLKTLEEP---RPNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEE 168 (325)
T ss_pred CHHHHHHHHHHhcCC---CCCeEEEEEECChHhCchHHHhhceE-EeCCCCCH
Confidence 345678899988874 34788899999999999999998854 56777654
No 182
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=94.04 E-value=1.4 Score=51.39 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCC---------CC-CCCcEEEEEecCCCC---cCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 519 RRLKTQFLIEMEGF---------DS-GSEQILLVGATNRPQ---ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 519 ~rilneLL~eLDGl---------~~-~~~~VlVIaATNrPd---~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
..+.+.|+..|+.- .. ....+.||+|+|..+ .|.++++.||+-+|.+..|.. ..+-..+++...
T Consensus 98 ~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~---~~er~eil~~~~ 174 (589)
T TIGR02031 98 DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS---QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC---HHHHHHHHHHHH
Confidence 34667777777521 11 113578899888765 799999999999888876542 222233333321
Q ss_pred hhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHhCC
Q 006411 586 MGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA-SVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 586 ~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP-Svs~~dl~~ye~w~k~fg~ 643 (646)
..... . ......+..+++..|-+.++. .++.+.++.+.+..-.+|.
T Consensus 175 -~~~~~---~--------~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv 221 (589)
T TIGR02031 175 -CNEVF---R--------MNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI 221 (589)
T ss_pred -Hhhhh---h--------cchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC
Confidence 00000 0 001123455666665544432 2455555566666555553
No 183
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.32 Score=52.49 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.-. +++++|..|+.|+.|-|.+++|.- .+.|+.|+.
T Consensus 121 ~~~AaNaLLKtLEEPp---~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~ 169 (319)
T PRK06090 121 NESASNALLKTLEEPA---PNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPST 169 (319)
T ss_pred CHHHHHHHHHHhcCCC---CCeEEEEEECChhhChHHHHhcce-eEeCCCCCH
Confidence 3456788999998743 478999999999999999999985 567888865
No 184
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.45 Score=53.91 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.8
Q ss_pred cCCHHHHhccccEEEeCCCCC---------CCcHHHHHHHHHHHhhhHHHH
Q 006411 550 ELDEAARRRLTKRLYIPLPSS---------GYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 550 ~LDpALlRRFDr~I~IplPd~---------GySGADL~~Lc~eAa~~Airr 591 (646)
.|...+++|||..++++.++. |-+++.++.-+-.|-...+.|
T Consensus 361 klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R 411 (490)
T COG0606 361 KLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIAR 411 (490)
T ss_pred HhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 345557779999999999873 557788888887666554444
No 185
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.94 E-value=0.29 Score=57.91 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.9
Q ss_pred EEEEecCCCCcCCHHHHh--ccccEEEeCCCCCCCcHHHHHHHHHHHhhhHHHH
Q 006411 540 LLVGATNRPQELDEAARR--RLTKRLYIPLPSSGYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 540 lVIaATNrPd~LDpALlR--RFDr~I~IplPd~GySGADL~~Lc~eAa~~Airr 591 (646)
-||+.+|.... |||+- -|...|+|+.|..---..-|+.||..-.|.+=-.
T Consensus 440 PIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~ 491 (877)
T KOG1969|consen 440 PIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSK 491 (877)
T ss_pred CEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHH
Confidence 47888896654 78876 6889999999876444456777776666554333
No 186
>PRK04132 replication factor C small subunit; Provisional
Probab=93.29 E-value=0.89 Score=55.10 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCC------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 458 EKLVRALFGVASCRQP------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aP------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
-..||.+.+.+....| -||||||+|.|-. ...+.|+..|+.
T Consensus 610 id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~---------------------------------~AQnALLk~lEe 656 (846)
T PRK04132 610 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------------DAQQALRRTMEM 656 (846)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH---------------------------------HHHHHHHHHhhC
Confidence 4567777665543332 5999999998832 135678888877
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. .++.+|++||.+..|-+++++|+ ..+.|+.|+.
T Consensus 657 p~---~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~ 691 (846)
T PRK04132 657 FS---SNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRD 691 (846)
T ss_pred CC---CCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCH
Confidence 54 36889999999999999999997 5567877763
No 187
>PRK09862 putative ATP-dependent protease; Provisional
Probab=93.16 E-value=0.4 Score=54.93 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=34.9
Q ss_pred CcEEEEEecCCCC---------------------cCCHHHHhccccEEEeCCCCC---------CCcHHHHHHHHH
Q 006411 537 EQILLVGATNRPQ---------------------ELDEAARRRLTKRLYIPLPSS---------GYSGSDMKNLVK 582 (646)
Q Consensus 537 ~~VlVIaATNrPd---------------------~LDpALlRRFDr~I~IplPd~---------GySGADL~~Lc~ 582 (646)
.++.+|+|+|... .|..+++.|||-++.++.|+. +.+-++|..-+.
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~ 411 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVM 411 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHh
Confidence 4689999999742 478899999999999999852 556666664443
No 188
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.10 E-value=0.48 Score=50.64 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplP 568 (646)
..|.||..|+.-. .++++|.+|+.++.|=|.+++|. .+|.|+.+
T Consensus 120 AaNaLLKtLEEPp---~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~~ 163 (290)
T PRK07276 120 AANSLLKVIEEPQ---SEIYIFLLTNDENKVLPTIKSRT-QIFHFPKN 163 (290)
T ss_pred HHHHHHHHhcCCC---CCeEEEEEECChhhCchHHHHcc-eeeeCCCc
Confidence 4688998888743 46888899999999999999998 44567654
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.93 E-value=1.2 Score=47.92 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=35.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
+++++|-....+.+.+.+..-. .-..-|||+|+++.+++...+.+.....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~ 54 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSS 54 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCC
Confidence 5778888888777777776522 1235699999997777777777765543
No 190
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=0.19 Score=54.62 Aligned_cols=131 Identities=24% Similarity=0.377 Sum_probs=72.8
Q ss_pred ccChHHHHHHHHHHHHhhccCcccccc---CCCCCccccccCCC--------------------------------CchH
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFKG---CRSPGKGLLLFGPP--------------------------------IGEG 457 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~~---~~~PprGVLLyGPP--------------------------------vGes 457 (646)
|+|.+.+|+.|.=+|....++-..... .--....|||.||. +||-
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 678888888775555432221111100 11223689999999 4443
Q ss_pred -HHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 458 -EKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 458 -ek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
|..+-.+.+.| .+.+.-||||||||.|+.+- ...+-.|.. +..-+...||..|+|-
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkS--------------eN~SITRDV-----SGEGVQQALLKiiEGT 203 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKS--------------ENPSITRDV-----SGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC--------------CCCCccccc-----CchHHHHHHHHHHcCc
Confidence 44455554433 12346799999999998620 000001211 2235778899999986
Q ss_pred CC----------CCCcEEEEEecCCC-------CcCCHHHHhccccE
Q 006411 533 DS----------GSEQILLVGATNRP-------QELDEAARRRLTKR 562 (646)
Q Consensus 533 ~~----------~~~~VlVIaATNrP-------d~LDpALlRRFDr~ 562 (646)
-. +....+.|-|||-. ..||.-+.+|..+.
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 42 12235555555543 45676666677543
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.70 E-value=1.3 Score=47.83 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=27.4
Q ss_pred CcEEEEEecCCC-------CcCCHHHHhccc-cEEEeCCCCCCCcHHHHHHHHHH
Q 006411 537 EQILLVGATNRP-------QELDEAARRRLT-KRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 537 ~~VlVIaATNrP-------d~LDpALlRRFD-r~I~IplPd~GySGADL~~Lc~e 583 (646)
.+|-||+|||.. ..+.+.|..||. ..|.+|+..+ -..||..|++.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLRe--R~eDI~~L~~~ 185 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRE--RQEDIMLLAEH 185 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhh--hhhhHHHHHHH
Confidence 358899999874 245567777884 4566665543 23455555544
No 192
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=91.59 E-value=1.8 Score=49.33 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=40.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
.+..++++|+|-....+.+.+.+.... ....-|||+|+++.+++...+.+.....
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 445789999998888888888776622 1235699999997777777777766554
No 193
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=91.02 E-value=1.4 Score=50.81 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=38.3
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.+|++|+|-....+.+++.+...- .....|||+|+++.+++...+.+...
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 468999999988888888876511 12357999999977777777777765
No 194
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=90.79 E-value=2.1 Score=45.80 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-CCcHHHHHHHH
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-GYSGSDMKNLV 581 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-GySGADL~~Lc 581 (646)
+....|.||..|+.-. +++++|..|+.++.|-|.+++|+-.. .|+.+.. +.+..++..+.
T Consensus 108 t~~AaNaLLK~LEEPp---~~~~fiL~~~~~~~ll~TI~SRcq~~-~~~~~~~~~i~~~~~~~l~ 168 (290)
T PRK05917 108 TLDAISAFLKVLEDPP---QHGVIILTSAKPQRLPPTIRSRSLSI-HIPMEEKTLVSKEDIAYLI 168 (290)
T ss_pred CHHHHHHHHHHhhcCC---CCeEEEEEeCChhhCcHHHHhcceEE-EccchhccCCCHHHHHHHH
Confidence 3456789999998843 47888889999999999999987543 5555443 45555544433
No 195
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=90.73 E-value=2.3 Score=49.02 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=41.7
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh-hhcCCee
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA-SCRQPAV 475 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A-r~~aPsI 475 (646)
..+|++|+|.....+.+.+.+...- .....|||+|+++.+++...+.+.... +...|-|
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv 267 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFV 267 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEE
Confidence 3678999999988888888775511 123579999999777777777777655 3334433
No 196
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.70 E-value=2 Score=43.66 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHhhhcCCeeeeehhhhHHh
Q 006411 466 GVASCRQPAVIFVDEIDSLL 485 (646)
Q Consensus 466 ~~Ar~~aPsIIFIDEIDsL~ 485 (646)
.......+.||+|||++.+-
T Consensus 117 ~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHhCCCCeEEEEECcccCC
Confidence 34456678899999999764
No 197
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.44 E-value=0.34 Score=53.13 Aligned_cols=23 Identities=48% Similarity=0.995 Sum_probs=16.2
Q ss_pred CCCccccccCCCCchHHHHHHHHH
Q 006411 442 SPGKGLLLFGPPIGEGEKLVRALF 465 (646)
Q Consensus 442 ~PprGVLLyGPPvGesek~Vr~lF 465 (646)
.+|+|+.||||+ |-+..++.++|
T Consensus 60 ~~~~GlYl~G~v-G~GKT~Lmd~f 82 (362)
T PF03969_consen 60 PPPKGLYLWGPV-GRGKTMLMDLF 82 (362)
T ss_pred CCCceEEEECCC-CCchhHHHHHH
Confidence 568999999998 54555554444
No 198
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=89.86 E-value=1.8 Score=52.71 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=25.6
Q ss_pred CcEEEEEecCCC-------------CcCCHHHHhccccEEE-eCCCCC
Q 006411 537 EQILLVGATNRP-------------QELDEAARRRLTKRLY-IPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrP-------------d~LDpALlRRFDr~I~-IplPd~ 570 (646)
.++-||||+|-. -.|.++|+.|||-.+. ++.|+.
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 478999999964 2578999999997743 456664
No 199
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=0.9 Score=51.28 Aligned_cols=95 Identities=25% Similarity=0.365 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhh----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 456 EGEKLVRALFGVAS----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 456 esek~Vr~lF~~Ar----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
+-|..|..+...|. +.+--||||||+|.|..+ .++. +. .|...+ .-+...||..++|
T Consensus 271 DVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~-~~~i-------~~------~RDVsG-----EGVQQaLLKllEG 331 (564)
T KOG0745|consen 271 DVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK-AESI-------HT------SRDVSG-----EGVQQALLKLLEG 331 (564)
T ss_pred cHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc-Cccc-------cc------cccccc-----hhHHHHHHHHhcc
Confidence 34777888877663 346779999999999851 1111 11 122222 3466778888886
Q ss_pred CC----------CCCCcEEEEEecCCC-------CcCCHHHHhccc-cEEEeCCCC
Q 006411 532 FD----------SGSEQILLVGATNRP-------QELDEAARRRLT-KRLYIPLPS 569 (646)
Q Consensus 532 l~----------~~~~~VlVIaATNrP-------d~LDpALlRRFD-r~I~IplPd 569 (646)
-- ...+..+.|-|||-. -.||.-+-||.+ +.+=|..|+
T Consensus 332 tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 332 TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 52 112335555555543 467888888664 566677774
No 200
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=88.96 E-value=1.2 Score=43.61 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=29.5
Q ss_pred ccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hcCCeee
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CRQPAVI 476 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~aPsII 476 (646)
|+|-....+.+.+.+..-. ..+.-|||+|+++.+++...+.+.+... ..+|-|.
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~ 55 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFIS 55 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEE
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEE
Confidence 3454555555555554421 1236799999997777777777776543 3345443
No 201
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=88.94 E-value=4.4 Score=46.20 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=37.0
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
++++|+|-....+.+.+.+..- ......|||+|+++.+++...+.+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 5789999888888888877661 12246799999996666666666666544
No 202
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.78 E-value=3.3 Score=48.85 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=43.4
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
+.+|++++|-....+.+.+.+..-. .....|||+|+++.+++...+.+...+......+++||
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 4678899999888888887776521 12356999999977777777777766643333344443
No 203
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.69 E-value=2.6 Score=46.42 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh---ccccE-EEeCCCCCCCcHHHHHHHHHHH
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR---RLTKR-LYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR---RFDr~-I~IplPd~GySGADL~~Lc~eA 584 (646)
|-+..|-..+....|.|||.|.+.+.++---.| ||..+ |+++.|-. -.|...+|++-
T Consensus 158 lYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~---l~~yv~l~r~l 218 (408)
T KOG2228|consen 158 LYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP---LGDYVDLYRKL 218 (408)
T ss_pred HHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCC---hHHHHHHHHHH
Confidence 334455544445689999999999988766555 99988 66555432 34444444443
No 204
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.76 E-value=1.8 Score=45.52 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCC---cCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATNRPQ---ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd---~LDpALlRRFDr~I~IplPd~ 570 (646)
.+|.+|+|.|-+. .|++.++|.|- .+.++.|+.
T Consensus 147 ~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~ 182 (272)
T PF12775_consen 147 EDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSD 182 (272)
T ss_dssp CSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TC
T ss_pred eeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCCh
Confidence 4588889988433 47888888774 688999986
No 205
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=1.8 Score=52.63 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=65.2
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCCCchHH------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPPIGEGE------------------------------ 458 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPPvGese------------------------------ 458 (646)
+.|+|.+++...|-++|...-. ++. .|.--+||.||.+.++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 4688999999999999877432 232 35677889999922222
Q ss_pred -----------HHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 459 -----------KLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 459 -----------k~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
.....+.+..+...-|||||||||.--+ .+.+.|+.
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~---------------------------------~v~n~llq 682 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP---------------------------------DVLNILLQ 682 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH---------------------------------HHHHHHHH
Confidence 2334556666666778999999984322 35677777
Q ss_pred HHcCCCC--------CCCcEEEEEecCC
Q 006411 528 EMEGFDS--------GSEQILLVGATNR 547 (646)
Q Consensus 528 eLDGl~~--------~~~~VlVIaATNr 547 (646)
.||.-.- .-.+++||||.|.
T Consensus 683 ~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 683 LLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHhcCccccCCCcEeeccceEEEEeccc
Confidence 7774421 1256999999876
No 206
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=87.00 E-value=2.2 Score=39.69 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=14.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.-|||+|+|+.+.....+.+...
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhh
Confidence 56999999955555555555443
No 207
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=86.84 E-value=3.3 Score=47.71 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=76.6
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCC---CCCccccccCCCCchHHHHHHHHHHHhhhcC----------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCR---SPGKGLLLFGPPIGEGEKLVRALFGVASCRQ---------------- 472 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~---~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a---------------- 472 (646)
+|.|.+++|+.|.-.+.- .++--.+-| +-.-.|+|.|-|+-.+...++.+-..|....
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 588999999987544322 222211112 2234599999996666677777777664331
Q ss_pred -------------C-------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 473 -------------P-------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 473 -------------P-------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
. -|-.|||+|.+... .| ..-|+.+.+ .+.-..=-|+
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------------DR--tAIHEVMEQ--QTISIaKAGI 475 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------------DR--TAIHEVMEQ--QTISIAKAGI 475 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------------hh--HHHHHHHHh--hhhhhhhhcc
Confidence 1 15669999998761 11 122332110 0011111233
Q ss_pred CC-CCCcEEEEEecCCCC-------------cCCHHHHhccccEEEe-CCCCC
Q 006411 533 DS-GSEQILLVGATNRPQ-------------ELDEAARRRLTKRLYI-PLPSS 570 (646)
Q Consensus 533 ~~-~~~~VlVIaATNrPd-------------~LDpALlRRFDr~I~I-plPd~ 570 (646)
.+ .+.+.-|++|+|-.+ .|+.||++|||-.+.+ ..||.
T Consensus 476 ~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdr 528 (721)
T KOG0482|consen 476 NTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDR 528 (721)
T ss_pred ccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcc
Confidence 32 245678889998654 6899999999976554 56654
No 208
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=86.68 E-value=11 Score=47.28 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE 480 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE 480 (646)
.+...+++++|++...++|.+.+.+- ....+-|-++||++-++...++.+|......-...+|+|.
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 34567889999999999988776431 1224678899999888888999999987765556677765
No 209
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=86.48 E-value=6.6 Score=44.03 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=81.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh-h-hcCCeeeeehhhh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA-S-CRQPAVIFVDEID 482 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A-r-~~aPsIIFIDEID 482 (646)
.....+++++|-...-++++|.+.. |.. -...||++|+++.+++...+.+-... + ..+|-|-| +.-
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~-------~ap---~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~--NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKA-------YAP---SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAF--NCA 139 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHh-------hCC---CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEE--EHH
Confidence 3456689999988888888887766 111 13569999999666665555554333 3 34554443 111
Q ss_pred HHhhhcccccccchhhhhhhhhhcccc--C---------CC------CCchhhHHHHHHHHHHHcC-----CCC---CCC
Q 006411 483 SLLSQMLPYMHVHHIKLFCLKRFYFQR--K---------SD------GEHESSRRLKTQFLIEMEG-----FDS---GSE 537 (646)
Q Consensus 483 sL~~k~~~~~~~~~~~~~~~kr~~~~R--~---------s~------~~~e~s~rilneLL~eLDG-----l~~---~~~ 537 (646)
.+.. +. ....+|.-+...+.. . ++ .-+.-.-.....|+..||. +.. ...
T Consensus 140 ~~~e----n~--~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 140 AYSE----NL--QEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred HhCc----CH--HHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 1110 00 000011111111100 0 00 0111122334456666664 222 234
Q ss_pred cEEEEEecCCCCcCCHHHHh-------ccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 538 QILLVGATNRPQELDEAARR-------RLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 538 ~VlVIaATNrPd~LDpALlR-------RFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
.|.+|+||| ..++.+++. |+...|.+|+--+- ..||..++..-.
T Consensus 214 dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER--~~Di~~L~e~Fl 264 (403)
T COG1221 214 DVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRER--KEDILLLAEHFL 264 (403)
T ss_pred Cceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhc--hhhHHHHHHHHH
Confidence 699999998 456666665 66777777776553 555555554433
No 210
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=86.41 E-value=8.4 Score=44.20 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=36.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
....+|++++|-....+.+.+.+..-.. ...-|||+|+++.+++...+.+....
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhC
Confidence 4567999999988877777666643111 12449999999666666666654433
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=85.58 E-value=7.5 Score=45.37 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=40.7
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hcCCeee
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CRQPAVI 476 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~aPsII 476 (646)
+..+|++|+|-....+.+.+.+..-.. ...-|||+|+++.+++...+.+..... ...|-|.
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~ 381 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIA 381 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEE
Confidence 456799999988887777776655221 124599999997777777777766543 3344443
No 212
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.42 E-value=6.9 Score=44.79 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=35.5
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh-cc-----ccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR-RL-----TKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR-RF-----Dr~I~IplPd~GySGADL~~Lc~e 583 (646)
+|+.+. +.++++||.+|..|.=|-.|.| .. .+.+.|++ ||..||..|+++
T Consensus 281 ewp~lp--~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~P----YTk~qI~~Il~~ 336 (529)
T KOG2227|consen 281 EWPKLP--NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPP----YTKDQIVEILQQ 336 (529)
T ss_pred hcccCC--cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecC----CCHHHHHHHHHH
Confidence 455543 4689999999999999988888 44 34555555 777777777653
No 213
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=85.04 E-value=2.5 Score=40.45 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCC-------C-CCCcEEEEEecCCCC-----cCCHHHHhcc
Q 006411 520 RLKTQFLIEMEGFD-------S-GSEQILLVGATNRPQ-----ELDEAARRRL 559 (646)
Q Consensus 520 rilneLL~eLDGl~-------~-~~~~VlVIaATNrPd-----~LDpALlRRF 559 (646)
++.+.||..|..-. - ..+..+||||-|..+ .|++|++-||
T Consensus 77 ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 77 KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 45566666665321 1 134589999999866 7888998887
No 214
>PRK06526 transposase; Provisional
Probab=84.97 E-value=2.2 Score=44.51 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=11.7
Q ss_pred CccccccCCCCchHHHH
Q 006411 444 GKGLLLFGPPIGEGEKL 460 (646)
Q Consensus 444 prGVLLyGPPvGesek~ 460 (646)
..+++|+|||+.++...
T Consensus 98 ~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 98 KENVVFLGPPGTGKTHL 114 (254)
T ss_pred CceEEEEeCCCCchHHH
Confidence 47899999994443333
No 215
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=83.98 E-value=2.4 Score=44.80 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.- ..++++|..|+.++.|-|.+++|.-. +.++.+..
T Consensus 101 ~~~AaNaLLK~LEEP---p~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~~~ 149 (261)
T PRK05818 101 NKQSANSLLKLIEEP---PKNTYGIFTTRNENNILNTILSRCVQ-YVVLSKEK 149 (261)
T ss_pred CHHHHHHHHHhhcCC---CCCeEEEEEECChHhCchHhhhheee-eecCChhh
Confidence 345678899888874 45789999999999999999999755 56777643
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=83.04 E-value=1.9 Score=47.50 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=42.9
Q ss_pred cc-cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc
Q 006411 410 WD-DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR 471 (646)
Q Consensus 410 fd-DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~ 471 (646)
|+ ++.|+++++++|.+.+.... .+.....+.++|+|||++++...++.|-.....+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 45 89999999999998876644 2233445789999999888888888887766553
No 217
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=82.80 E-value=3.7 Score=44.43 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....+.||..|+.... ++.+|.+|+.++.|-+.+++|+- .+.|+.|+.
T Consensus 126 d~~a~naLLk~LEep~~---~~~~Ilvth~~~~ll~ti~SRc~-~~~~~~~~~ 174 (325)
T PRK08699 126 NLQAANSLLKVLEEPPP---QVVFLLVSHAADKVLPTIKSRCR-KMVLPAPSH 174 (325)
T ss_pred CHHHHHHHHHHHHhCcC---CCEEEEEeCChHhChHHHHHHhh-hhcCCCCCH
Confidence 34567788888887643 46677799999999999998874 456777754
No 218
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=82.03 E-value=17 Score=43.56 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=47.4
Q ss_pred HHHHHHHHh-hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCc
Q 006411 460 LVRALFGVA-SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQ 538 (646)
Q Consensus 460 ~Vr~lF~~A-r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~ 538 (646)
.+..-|... -+..|+||+|||+|.|+. .. +.|+--|.. |-. .++.+
T Consensus 495 ~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------------------r~---------QdVlYn~fd-Wpt--~~~sK 541 (767)
T KOG1514|consen 495 ALNFRFTVPKPKRSTTVVLIDELDILVT---------------------RS---------QDVLYNIFD-WPT--LKNSK 541 (767)
T ss_pred HHHHhhccCCCCCCCEEEEeccHHHHhc---------------------cc---------HHHHHHHhc-CCc--CCCCc
Confidence 344444433 345799999999999987 11 224333332 222 23457
Q ss_pred EEEEEecCCCCcCCHHHHhccccEEEeCCCCC-CCcHHHHHHHHH
Q 006411 539 ILLVGATNRPQELDEAARRRLTKRLYIPLPSS-GYSGSDMKNLVK 582 (646)
Q Consensus 539 VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-GySGADL~~Lc~ 582 (646)
++||+-.|.-+....-|.-|..-++-+..-.. .|+-..|..++.
T Consensus 542 Lvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~ 586 (767)
T KOG1514|consen 542 LVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIIS 586 (767)
T ss_pred eEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHH
Confidence 88888888765544333323332222221111 456566655553
No 219
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=81.37 E-value=4.7 Score=41.52 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=32.5
Q ss_pred CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEec
Q 006411 472 QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 472 aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaAT 545 (646)
...+|+||.|+.+.. .|. ...|... +. ...+...-..+.+.|+..|..+.+...+|++++-.
T Consensus 81 ~ydtVVIDsI~~l~~------~~~--~~~~r~~---k~-~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 81 KYDNIVIDNISALQN------LWL--ENIGRAA---KN-GQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred cCCEEEEecHHHHHH------HHH--HHHhhhc---CC-CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 467999999999865 111 1112111 11 11122233446666777666665544466666643
No 220
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=81.24 E-value=7.7 Score=35.20 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..+.++..+....|.+|+|||+..++.
T Consensus 73 ~~~~~~~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 73 LLSKAERLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHHHHHHHhCCCCEEEEEEcHHHHHH
Confidence 334556677778899999999999986
No 221
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=81.11 E-value=21 Score=41.90 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcC---------CCC-CCCcEEEEEecCCC---CcCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEG---------FDS-GSEQILLVGATNRP---QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDG---------l~~-~~~~VlVIaATNrP---d~LDpALlRRFDr~I~IplPd~ 570 (646)
..++..|+.-|+. ... ...+.+||++-|-. ..|.++++-||+-+|.++.|+.
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCCh
Confidence 3577788887763 111 12356777763321 3499999999999999998864
No 222
>PRK08116 hypothetical protein; Validated
Probab=80.05 E-value=6.9 Score=41.11 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCCCcccccccC---hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh
Q 006411 404 RDPHVRWDDIAG---LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE 480 (646)
Q Consensus 404 ~~p~VsfdDIgG---le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE 480 (646)
...+.+|++..- ...++..+++++.. |........|++|||||+.+.......+...+....-.++|++-
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 445677876642 22234444444432 11122234689999999777777888888877665666777754
No 223
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=79.27 E-value=9.1 Score=45.58 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=83.8
Q ss_pred hhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCCCchHHHHHHHHHHHh
Q 006411 390 EPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 390 ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
+|...+.+.+.|. -.|-|+|++|+-|.-.+.- =++.++.+..+ +---.|||+|-|+..+.+++.-++..+
T Consensus 416 rpdiy~lLa~SiA--------PsIye~edvKkglLLqLfG-Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~ 486 (804)
T KOG0478|consen 416 RPDIYELLARSIA--------PSIYELEDVKKGLLLQLFG-GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLL 486 (804)
T ss_pred CccHHHHHHHhhc--------hhhhcccchhhhHHHHHhc-CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhC
Confidence 3445555555442 2578999999877432211 01222222211 223569999999777888888888876
Q ss_pred hhcC-----------------------------C-------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 469 SCRQ-----------------------------P-------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 469 r~~a-----------------------------P-------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
-.-. . -|--|||+|.+-.
T Consensus 487 pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d-------------------------- 540 (804)
T KOG0478|consen 487 PRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD-------------------------- 540 (804)
T ss_pred CcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH--------------------------
Confidence 3220 1 1555899998843
Q ss_pred CCchhhHHHHHHHHHH------HcCCC-CCCCcEEEEEecCCCC-------------cCCHHHHhccccEE-EeCCCCC
Q 006411 513 GEHESSRRLKTQFLIE------MEGFD-SGSEQILLVGATNRPQ-------------ELDEAARRRLTKRL-YIPLPSS 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~e------LDGl~-~~~~~VlVIaATNrPd-------------~LDpALlRRFDr~I-~IplPd~ 570 (646)
..+.++.+.+.| .-|+- +.+.+--|||+.|-.. .|.|.|++|||-++ .+..||+
T Consensus 541 ----StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE 615 (804)
T KOG0478|consen 541 ----STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDE 615 (804)
T ss_pred ----HHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcch
Confidence 123344444433 12222 1234567899999321 58899999999764 4677876
No 224
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.70 E-value=3.2 Score=43.91 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=28.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP 453 (646)
.++.++.+.||+|-++..+.|.-+... +.. ..+++.|||
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-----------gnm-P~liisGpP 57 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-----------GNM-PNLIISGPP 57 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-----------CCC-CceEeeCCC
Confidence 456677889999999999988654432 211 478899999
No 225
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=78.36 E-value=25 Score=38.69 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=26.6
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
.+..+.|-......+.+.+.. .......||++|+++.+.+...+.+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 190 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------IALSQASVLISGESGTGKELIARAIHYNS 190 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------HcCCCcEEEEEcCCCccHHHHHHHHHHhC
Confidence 345566655555554444333 11123569999999555555555554433
No 226
>PRK08181 transposase; Validated
Probab=78.03 E-value=5.4 Score=42.17 Aligned_cols=34 Identities=38% Similarity=0.476 Sum_probs=19.4
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhcCCeeee
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIF 477 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIF 477 (646)
..+++|+|||+.++......+-..|....-.|+|
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceee
Confidence 4689999999555555555544433333333333
No 227
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=77.64 E-value=3.2 Score=39.27 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=19.9
Q ss_pred CchHHHHHHHHHHHhh-hcCC-eeeeehhhhHHh
Q 006411 454 IGEGEKLVRALFGVAS-CRQP-AVIFVDEIDSLL 485 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar-~~aP-sIIFIDEIDsL~ 485 (646)
.|.+++.+=.++..+. .... .+|+|||.|.-+
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~L 270 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHL 270 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTS
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCC
Confidence 4777777644444444 3333 999999999654
No 228
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=77.33 E-value=10 Score=44.52 Aligned_cols=119 Identities=19% Similarity=0.221 Sum_probs=74.0
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCC---ccccccCCCCchHHHHHHHHHHHhhhcC----------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPG---KGLLLFGPPIGEGEKLVRALFGVASCRQ---------------- 472 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~Pp---rGVLLyGPPvGesek~Vr~lF~~Ar~~a---------------- 472 (646)
.|-|.+.+|+.|.-.+ |..-+.--..|..- -.|||.|-|......++|-+...|-..=
T Consensus 302 SI~GH~~vKkAillLL---lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLL---LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred ccccHHHHHHHHHHHH---hccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 5889999998874322 33222211122222 3599999997777888888888773321
Q ss_pred --------------------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH---
Q 006411 473 --------------------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM--- 529 (646)
Q Consensus 473 --------------------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL--- 529 (646)
.-|+.|||+|.+-. .+ +..+.+.+.|-
T Consensus 379 TtD~eTGERRLEAGAMVLADRGVVCIDEFDKMsD--------------------------iD----RvAIHEVMEQqtVT 428 (818)
T KOG0479|consen 379 TTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD--------------------------ID----RVAIHEVMEQQTVT 428 (818)
T ss_pred eeccccchhhhhcCceEEccCceEEehhcccccc--------------------------hh----HHHHHHHHhcceEE
Confidence 22888999998743 11 22333443331
Q ss_pred ---cCCCC-CCCcEEEEEecCCCC-------------cCCHHHHhccccEE
Q 006411 530 ---EGFDS-GSEQILLVGATNRPQ-------------ELDEAARRRLTKRL 563 (646)
Q Consensus 530 ---DGl~~-~~~~VlVIaATNrPd-------------~LDpALlRRFDr~I 563 (646)
-|+.. .+.+.-||+|+|-.+ .|...||.|||-.+
T Consensus 429 IaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlF 479 (818)
T KOG0479|consen 429 IAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLF 479 (818)
T ss_pred eEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEE
Confidence 13332 245778999999755 47778999999753
No 229
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=76.54 E-value=3.5 Score=42.20 Aligned_cols=42 Identities=38% Similarity=0.524 Sum_probs=28.2
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL 464 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l 464 (646)
.|+||.|.+.+|..|.-+..- ..++||+|||+..+....+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l 42 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRL 42 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHH
T ss_pred ChhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHH
Confidence 378999999999998766643 369999999944444444443
No 230
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=76.49 E-value=13 Score=41.86 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=29.7
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccC--CCCCccccccCCCCchHHHHHHHHHH
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC--RSPGKGLLLFGPPIGEGEKLVRALFG 466 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~--~~PprGVLLyGPPvGesek~Vr~lF~ 466 (646)
.|.-..+....+..|+..... ...+..... ..||+|+.|||-- |-+..++.++|=
T Consensus 79 ~~~~~~e~~r~i~~l~k~~~~--~k~~~~~a~~~~~~PkGlYlYG~V-GcGKTmLMDlFy 135 (467)
T KOG2383|consen 79 QWSAKREEGRWIFELKKSFDD--GKLDTPNASGQPGPPKGLYLYGSV-GCGKTMLMDLFY 135 (467)
T ss_pred ccccchhhhhHHHHHHHHHhc--cCCCCcccccCCCCCceEEEeccc-CcchhHHHHHHh
Confidence 344444444444555444433 112222222 3578999999986 666666666654
No 231
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=75.47 E-value=4.2 Score=40.17 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=41.1
Q ss_pred CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC
Q 006411 472 QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL 551 (646)
Q Consensus 472 aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L 551 (646)
..+||+|||+..+++ .|...+.. ..+.+..+..... .++-||.+|-.|..|
T Consensus 79 ~~~liviDEa~~~~~---------------------~r~~~~~~------~~~~~~~l~~hRh--~g~diiliTQ~~~~i 129 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFP---------------------SRSWKGKK------VPEIIEFLAQHRH--YGWDIILITQSPSQI 129 (193)
T ss_dssp TT-EEEETTGGGTSB------------------------T-T----------HHHHGGGGCCC--TT-EEEEEES-GGGB
T ss_pred CCcEEEEECChhhcC---------------------CCcccccc------chHHHHHHHHhCc--CCcEEEEEeCCHHHH
Confidence 679999999999987 34221111 1222333333332 467899999999999
Q ss_pred CHHHHhccccEEEeCCCC
Q 006411 552 DEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 552 DpALlRRFDr~I~IplPd 569 (646)
|+.+++..+.++.+-.++
T Consensus 130 d~~ir~lve~~~~~~k~~ 147 (193)
T PF05707_consen 130 DKFIRDLVEYHYHCRKLD 147 (193)
T ss_dssp -HHHHCCEEEEEEEEE--
T ss_pred hHHHHHHHheEEEEEeec
Confidence 999988888888776664
No 232
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=74.92 E-value=9.1 Score=44.42 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL 464 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l 464 (646)
..-..+|+||+|-......+.+.+.. ....+..|||+|-.+.++|-..+.+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~I 288 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAI 288 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHH
Confidence 44568999999988887777776644 2234578999999955555444444
No 233
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=74.81 E-value=25 Score=37.87 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+... +.+++|.+|+.|..|-|.+++|... ++|++|+.
T Consensus 103 ~~~a~NaLLK~LEEPp---~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~ 151 (299)
T PRK07132 103 SNSLLNALLKTIEEPP---KDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQ 151 (299)
T ss_pred CHHHHHHHHHHhhCCC---CCeEEEEEeCChHhChHHHHhCeEE-EECCCCCH
Confidence 3456788999998854 3677777777899999999888744 67777643
No 234
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=2.9 Score=51.62 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=79.0
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
....+..|-.+|..|+..+||||||-++|.-.. .. ...+..+|+..++...
T Consensus 635 ~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~---------------------~~--------p~s~~~~~~~~l~~~~ 685 (1080)
T KOG0732|consen 635 TEDLEEEIVHIFMEARKTTPSIVFIPNVDEWAR---------------------VI--------PVSFLEEFLSSLDEKA 685 (1080)
T ss_pred cccHHHHHHHHHHHHhccCCceeeccchhhhhh---------------------cC--------cchhhhcchhcchhhh
Confidence 455577889999999999999999999998765 11 1123445555555443
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----CCcHHHHHHHHHHHhhhHHHH-----HHHhchhhhhh--
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----GYSGSDMKNLVKEASMGPLRE-----ALRQGIEITRL-- 602 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----GySGADL~~Lc~eAa~~Airr-----~l~~~~~~~~~-- 602 (646)
. ...|..+-+-+.-+.-++. ....+..|+. +|...+|+.+|..+...+.++ .+.+.......
T Consensus 686 ~-~t~i~e~~t~~~~~~~~~~------~~~t~~~p~~~s~~~ff~r~I~~~~~~~~~~~~k~~~~~~~~p~v~~d~~~t~ 758 (1080)
T KOG0732|consen 686 L-STPILELHTWDTSFESVNK------SVVTLSKPSAESTGAFFKRLIRKISQEPSGEAGKRPRPLPELPKVAKDSEFTE 758 (1080)
T ss_pred h-ccchhhhccccccccccCc------cccccccchhhhhHHHHHHHHHHHhhhhhccccCCCCcccccccccCCccccc
Confidence 3 3344444332222111111 1223445544 899999999999999888876 22221111000
Q ss_pred cccCCCCccHHHH-HHHHhhcCC
Q 006411 603 QKEDMQPVTLQDF-ENALPQVRA 624 (646)
Q Consensus 603 ~~~~~~~Vt~eDF-e~AL~kvrP 624 (646)
..+....+..+|+ +.+..++.+
T Consensus 759 ~~~~~~~~~~~d~~~~~~~~~~~ 781 (1080)
T KOG0732|consen 759 LDESKKKIEAEDLRLKNRLKIKL 781 (1080)
T ss_pred hhhhhcchhHHHHHHhhhhhccc
Confidence 0123346777888 667776666
No 235
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=74.17 E-value=41 Score=37.06 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=28.0
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.+.++.|-....+.+.+.+..- ......|||+|+++.+.+...+.+-..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4456777666666666655431 112356899999955444444444443
No 236
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=74.15 E-value=25 Score=39.11 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=30.9
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
.+.++.|-....+.+.+.+.. + ......||+.|+++.+++...+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~-~---------~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR-L---------SRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccccceecCHHHHHHHHHHHH-H---------hccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 456788877666666655543 1 1123569999999666665555555544
No 237
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=72.56 E-value=18 Score=40.79 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHcC---------CCC-CCCcEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEG---------FDS-GSEQILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDG---------l~~-~~~~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
..+++.||.-+.. +.- ..-++++|||+|--. .|-|-|+-||...|.+-.|..
T Consensus 158 d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~ 220 (423)
T COG1239 158 DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLD 220 (423)
T ss_pred HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCC
Confidence 3577777765543 221 124689999999543 588888889999999999875
No 238
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=70.22 E-value=42 Score=37.17 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=26.9
Q ss_pred cEEEEEecCCCC-------cCCHHHHhccc-cEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 538 QILLVGATNRPQ-------ELDEAARRRLT-KRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 538 ~VlVIaATNrPd-------~LDpALlRRFD-r~I~IplPd~GySGADL~~Lc~eA 584 (646)
++-||+||+..- .+.+.|..|+. ..|++|+... -..||..|++..
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~--R~~Di~~l~~~~ 321 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRE--RREDIPRLARHF 321 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCccc--chhhHHHHHHHH
Confidence 577888888642 45556666665 3666666543 235555555433
No 239
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=69.46 E-value=0.83 Score=49.28 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=18.6
Q ss_pred cEEEEEecCCCC-------------cCCHHHHhccccEEEe-CCCC
Q 006411 538 QILLVGATNRPQ-------------ELDEAARRRLTKRLYI-PLPS 569 (646)
Q Consensus 538 ~VlVIaATNrPd-------------~LDpALlRRFDr~I~I-plPd 569 (646)
+.-|+||+|-.. .+++.|+.|||-.+.+ ..|+
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccc
Confidence 567899999766 5888999999988654 3444
No 240
>COG1485 Predicted ATPase [General function prediction only]
Probab=68.26 E-value=24 Score=39.23 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRP 548 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrP 548 (646)
-|+..|+.+|= ..+|++++|+|.+
T Consensus 148 MiL~rL~~~Lf-----~~GV~lvaTSN~~ 171 (367)
T COG1485 148 MILGRLLEALF-----ARGVVLVATSNTA 171 (367)
T ss_pred HHHHHHHHHHH-----HCCcEEEEeCCCC
Confidence 35556665553 2479999999984
No 241
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=67.25 E-value=6.8 Score=35.06 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=10.6
Q ss_pred ccccCCCCchHHHHHHH
Q 006411 447 LLLFGPPIGEGEKLVRA 463 (646)
Q Consensus 447 VLLyGPPvGesek~Vr~ 463 (646)
|.|||||+-++...++.
T Consensus 1 I~i~G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKE 17 (107)
T ss_pred CEEECCCCCCHHHHHHH
Confidence 57999994444444444
No 242
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=66.77 E-value=41 Score=40.02 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=53.5
Q ss_pred cEEEEEecCCC--CcCCHHHHhccc---cEEEeCC--CCC----------------------CCcHHHHHHHHHHHhhhH
Q 006411 538 QILLVGATNRP--QELDEAARRRLT---KRLYIPL--PSS----------------------GYSGSDMKNLVKEASMGP 588 (646)
Q Consensus 538 ~VlVIaATNrP--d~LDpALlRRFD---r~I~Ipl--Pd~----------------------GySGADL~~Lc~eAa~~A 588 (646)
++.||++||+. +.+||+++.||. ..+++.. |+. .|+..-+..|++.+...|
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~a 356 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRA 356 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHh
Confidence 57889999985 678999999885 4444431 111 366666666666666544
Q ss_pred HHHH------------HHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHH
Q 006411 589 LREA------------LRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYE 635 (646)
Q Consensus 589 irr~------------l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye 635 (646)
=.+. +...... ........++.+|...|+.. ..++....++.|.
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~~~--a~~~~~~~i~~~~v~~a~~~-~~~i~~~~~~~~l 412 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAGDI--ARSEGAELTTAEHVLEAKKI-ARSIEQQLADRYI 412 (637)
T ss_pred CCccccccCHHHHHHHHHHHHHH--HHhhccceecHHHHHHHHHh-hhhhhHHHHHHHh
Confidence 2211 0000000 11233456888999888854 3445555555444
No 243
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=66.39 E-value=20 Score=34.19 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.7
Q ss_pred HHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 461 VRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 461 Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
+..+...+....|.+|+||++-.+..
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 45666666778899999999998865
No 244
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=66.32 E-value=7.7 Score=45.67 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=39.6
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC 470 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~ 470 (646)
-|+|+.||+++++.|.+.+..-.. ++....+-++|.|||++++...++.+-.....
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 478999999999999888744222 22334467889999977777777766554443
No 245
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=65.86 E-value=8 Score=39.95 Aligned_cols=28 Identities=18% Similarity=0.371 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 459 KLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 459 k~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
.++..+.+.++..+|.+++|+++..|..
T Consensus 89 ~L~~~~~~~v~~~~Pk~~~~ENV~~l~~ 116 (335)
T PF00145_consen 89 SLFFEFLRIVKELKPKYFLLENVPGLLS 116 (335)
T ss_dssp SHHHHHHHHHHHHS-SEEEEEEEGGGGT
T ss_pred hhhHHHHHHHhhccceEEEecccceeec
Confidence 4677888888899999999999999986
No 246
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=65.10 E-value=9.1 Score=46.88 Aligned_cols=95 Identities=24% Similarity=0.314 Sum_probs=65.4
Q ss_pred ccccccCCC-CchHHHHHHHHHHHhh-hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 445 KGLLLFGPP-IGEGEKLVRALFGVAS-CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 445 rGVLLyGPP-vGesek~Vr~lF~~Ar-~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
-|.|+.|+. -|+-+..++.+-..+. .....|+||||+..+.. .....+ .....
T Consensus 251 ~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg---------------------~g~~~~----~~d~~ 305 (898)
T KOG1051|consen 251 FGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVG---------------------SGSNYG----AIDAA 305 (898)
T ss_pred hhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeec---------------------CCCcch----HHHHH
Confidence 345888888 8899999999999988 55678999999999987 222211 11122
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCC-----CCcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNR-----PQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNr-----Pd~LDpALlRRFDr~I~IplPd~ 570 (646)
.+|.-+-+ .+++-+||||.. -..=|||+-|||+.+ .++.|+.
T Consensus 306 -nlLkp~L~----rg~l~~IGatT~e~Y~k~iekdPalErrw~l~-~v~~pS~ 352 (898)
T KOG1051|consen 306 -NLLKPLLA----RGGLWCIGATTLETYRKCIEKDPALERRWQLV-LVPIPSV 352 (898)
T ss_pred -HhhHHHHh----cCCeEEEecccHHHHHHHHhhCcchhhCccee-EeccCcc
Confidence 22222222 234888887763 235699999999886 6999975
No 247
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=64.40 E-value=20 Score=38.12 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=54.2
Q ss_pred HHHHHHHHHhh----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 459 KLVRALFGVAS----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 459 k~Vr~lF~~Ar----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
..||++-+.+. ...--|++|+++|.+-. ...|.||..|+.-
T Consensus 72 dqIReL~~~l~~~p~~g~~KViII~~ae~mt~---------------------------------~AANALLKtLEEP-- 116 (263)
T PRK06581 72 EQIRKLQDFLSKTSAISGYKVAIIYSAELMNL---------------------------------NAANSCLKILEDA-- 116 (263)
T ss_pred HHHHHHHHHHhhCcccCCcEEEEEechHHhCH---------------------------------HHHHHHHHhhcCC--
Confidence 34555544432 22456999999998854 2468899888874
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..++++|..|..+..|-|.+++|+- .+.++.|+.
T Consensus 117 -P~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~ 150 (263)
T PRK06581 117 -PKNSYIFLITSRAASIISTIRSRCF-KINVRSSIL 150 (263)
T ss_pred -CCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCH
Confidence 3478888888889999999999874 457887765
No 248
>PRK15115 response regulator GlrR; Provisional
Probab=63.71 E-value=41 Score=37.09 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=16.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHhh
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
..|+|+|+++.+.+...+.+.....
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcC
Confidence 4588999996666655555555443
No 249
>PF12846 AAA_10: AAA-like domain
Probab=63.67 E-value=13 Score=37.66 Aligned_cols=66 Identities=24% Similarity=0.387 Sum_probs=50.5
Q ss_pred cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCc
Q 006411 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQE 550 (646)
Q Consensus 471 ~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~ 550 (646)
..|.++||||+..++. .. .....+..++.+.... ++.++.+|..|..
T Consensus 219 ~~~~~i~iDEa~~~~~---------------------~~-------~~~~~~~~~~~~~Rk~-----g~~~~l~tQ~~~~ 265 (304)
T PF12846_consen 219 GRPKIIVIDEAHNFLS---------------------NP-------SGAEFLDELLREGRKY-----GVGLILATQSPSD 265 (304)
T ss_pred CceEEEEeCCcccccc---------------------cc-------chhhhhhHHHHHHHhc-----CCEEEEeeCCHHH
Confidence 5799999999988876 11 2234556666666443 5788999999999
Q ss_pred CC-----HHHHhccccEEEeCCCC
Q 006411 551 LD-----EAARRRLTKRLYIPLPS 569 (646)
Q Consensus 551 LD-----pALlRRFDr~I~IplPd 569 (646)
|+ ++++.-+...|.+..++
T Consensus 266 l~~~~~~~~i~~n~~~~i~~~~~~ 289 (304)
T PF12846_consen 266 LPKSPIEDAILANCNTKIIFRLED 289 (304)
T ss_pred HhccchHHHHHHhCCcEEEecCCh
Confidence 99 89999888888888855
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.10 E-value=55 Score=36.47 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR 557 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR 557 (646)
..+.+.+..|.+.......++||-+|+..+.++..+.+
T Consensus 231 ~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 231 RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHH
Confidence 44667777777766545679999999999999977665
No 251
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=62.53 E-value=99 Score=33.87 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|-..|+.+.. ++-+|...|....|=+++++|. -.|.+|.|+.
T Consensus 147 LRRTMEkYs~---~~RlIl~cns~SriIepIrSRC-l~iRvpaps~ 188 (351)
T KOG2035|consen 147 LRRTMEKYSS---NCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSD 188 (351)
T ss_pred HHHHHHHHhc---CceEEEEecCcccchhHHhhhe-eEEeCCCCCH
Confidence 4444555544 5677888899999999999865 2356777765
No 252
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=61.57 E-value=11 Score=44.83 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=31.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCCCchHHHHHHHHHHHh
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
-.|-|.+++|+.|.=.+.-.. +....... +---.|||.|-|+..+..+++.+-+.|
T Consensus 286 PsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a 343 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA 343 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC
Confidence 468899998887643322211 11111110 111459999999666666666665544
No 253
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=60.44 E-value=91 Score=35.20 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhh-cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCC
Q 006411 457 GEKLVRALFGVASC-RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSG 535 (646)
Q Consensus 457 sek~Vr~lF~~Ar~-~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~ 535 (646)
..+.|..|.+.-++ .=|-|+||||+.-|-- + ..+.|-..|..--.
T Consensus 275 vn~~V~~~ieeGkAElVpGVLFIDEvHmLDI-----------------------------E----~FsFlnrAlEse~a- 320 (450)
T COG1224 275 VNEKVKKWIEEGKAELVPGVLFIDEVHMLDI-----------------------------E----CFSFLNRALESELA- 320 (450)
T ss_pred HHHHHHHHHhcCcEEeecceEEEechhhhhH-----------------------------H----HHHHHHHHhhcccC-
Confidence 34455555555442 3599999999987632 0 11222222322111
Q ss_pred CCcEEEEEecCC------------CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 536 SEQILLVGATNR------------PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 536 ~~~VlVIaATNr------------Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
-+||+|||| |.-|+..|+.|+ +-+ ++.-|+-.+|+.+++-
T Consensus 321 ---PIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl---lII--~t~py~~~EireIi~i 372 (450)
T COG1224 321 ---PIIILATNRGMTKIRGTDIESPHGIPLDLLDRL---LII--STRPYSREEIREIIRI 372 (450)
T ss_pred ---cEEEEEcCCceeeecccCCcCCCCCCHhhhhhe---eEE--ecCCCCHHHHHHHHHH
Confidence 277889998 778888888654 332 3445788888888753
No 254
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=59.51 E-value=78 Score=32.45 Aligned_cols=139 Identities=21% Similarity=0.259 Sum_probs=78.4
Q ss_pred hhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCcccccc-----CCCCC--------ccc---cc--cCC
Q 006411 391 PRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKG-----CRSPG--------KGL---LL--FGP 452 (646)
Q Consensus 391 p~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~-----~~~Pp--------rGV---LL--yGP 452 (646)
+.+...+.+-|......+.|..=---.---+..+..|.+....|.+|-. +.-|+ +.. || +|-
T Consensus 43 Stllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l 122 (223)
T COG4619 43 STLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFAL 122 (223)
T ss_pred HHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCC
Confidence 3456667777777777888876532222234445555555566666532 11111 110 11 233
Q ss_pred C----------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 453 P----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 453 P----------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
| ..++|+..-++..... ..|.|+++||+-+-+. +...+-+
T Consensus 123 ~~~~L~k~it~lSGGE~QriAliR~Lq-~~P~ILLLDE~TsALD-----------------------------~~nkr~i 172 (223)
T COG4619 123 PDSILTKNITELSGGEKQRIALIRNLQ-FMPKILLLDEITSALD-----------------------------ESNKRNI 172 (223)
T ss_pred chhhhcchhhhccchHHHHHHHHHHhh-cCCceEEecCchhhcC-----------------------------hhhHHHH
Confidence 3 4555665555444433 4699999999987654 1123445
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~Ipl 567 (646)
+.++..+-. ..+|-|+..|..++. .+|-+++.|.+..
T Consensus 173 e~mi~~~v~----~q~vAv~WiTHd~dq----a~rha~k~itl~~ 209 (223)
T COG4619 173 EEMIHRYVR----EQNVAVLWITHDKDQ----AIRHADKVITLQP 209 (223)
T ss_pred HHHHHHHhh----hhceEEEEEecChHH----HhhhhheEEEecc
Confidence 555544432 357899999986542 3567888887754
No 255
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=59.25 E-value=23 Score=38.59 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
+..+..+...++...+.+|+||-|-++.++.+ .+ ....+.......|+++++|..|.++.. ..
T Consensus 119 eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E---------------~e-~~~g~~~~~~~aR~m~~~lr~L~~~l~-~~ 181 (321)
T TIGR02012 119 EQALEIAETLVRSGAVDIIVVDSVAALVPKAE---------------IE-GEMGDSHVGLQARLMSQALRKLTGALS-KS 181 (321)
T ss_pred HHHHHHHHHHhhccCCcEEEEcchhhhccchh---------------hc-ccccccchhHHHHHHHHHHHHHHHHHH-hC
Confidence 33444444555566777888877777764100 00 000111111233566777777777655 34
Q ss_pred cEEEEEecC
Q 006411 538 QILLVGATN 546 (646)
Q Consensus 538 ~VlVIaATN 546 (646)
++.||+|..
T Consensus 182 ~~tvi~tNQ 190 (321)
T TIGR02012 182 NTTAIFINQ 190 (321)
T ss_pred CCEEEEEec
Confidence 677777644
No 256
>PRK12377 putative replication protein; Provisional
Probab=58.89 E-value=29 Score=36.33 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=47.4
Q ss_pred hcccCCCCccccccc----ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCee
Q 006411 400 EIMDRDPHVRWDDIA----GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAV 475 (646)
Q Consensus 400 ~i~~~~p~VsfdDIg----Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsI 475 (646)
.|.....+.+|+... |...++..+..++.... ....+++|+|||+.+......++-..+....-++
T Consensus 63 ~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v 132 (248)
T PRK12377 63 GIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSV 132 (248)
T ss_pred CCCcccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 455667788898875 33345555555443311 1236899999997777777777777776666677
Q ss_pred eeehhhh
Q 006411 476 IFVDEID 482 (646)
Q Consensus 476 IFIDEID 482 (646)
+|+.--|
T Consensus 133 ~~i~~~~ 139 (248)
T PRK12377 133 IVVTVPD 139 (248)
T ss_pred EEEEHHH
Confidence 7775544
No 257
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=56.24 E-value=15 Score=41.18 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=0.0
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCC-----
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR----- 547 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNr----- 547 (646)
|-|+||||+.-|-- .-.+.|=..|+.--++ +||+||||
T Consensus 279 pGVLFIDEvHmLDi---------------------------------EcFsfLnralEs~~sP----iiIlATNRg~~~i 321 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI---------------------------------ECFSFLNRALESELSP----IIILATNRGITKI 321 (398)
T ss_dssp E-EEEEESGGGSBH---------------------------------HHHHHHHHHHTSTT------EEEEEES-SEEE-
T ss_pred cceEEecchhhccH---------------------------------HHHHHHHHHhcCCCCc----EEEEecCceeeec
Q ss_pred -------CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 548 -------PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 548 -------Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
|.-|+..||.|+ +=.++.-|+..|++.+++
T Consensus 322 rGt~~~sphGiP~DlLDRl-----lII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 322 RGTDIISPHGIPLDLLDRL-----LIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp BTTS-EEETT--HHHHTTE-----EEEEE----HHHHHHHHH
T ss_pred cCccCcCCCCCCcchHhhc-----EEEECCCCCHHHHHHHHH
No 258
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=56.16 E-value=76 Score=36.49 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=35.9
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
..+.+++|-..+.++|++.+.. .......||++|..+.++|-..|.+-+..+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~ 189 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASP 189 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCc
Confidence 4678999988888888887755 122346799999996666655555555443
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=56.11 E-value=18 Score=38.89 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=29.5
Q ss_pred CCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 443 PGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 443 PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
..+|++|||||+.+...++.++...+.....+++|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3589999999977778888888888777777777663
No 260
>PRK07952 DNA replication protein DnaC; Validated
Probab=54.80 E-value=42 Score=35.03 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=47.4
Q ss_pred hcccCCCCcccccccCh----HHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCee
Q 006411 400 EIMDRDPHVRWDDIAGL----EHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAV 475 (646)
Q Consensus 400 ~i~~~~p~VsfdDIgGl----e~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsI 475 (646)
.|.....+.+|+++.-. ..+...+.+++.. |. ....+++|+|||+.+....+.++-..+.....++
T Consensus 61 ~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~---~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v 130 (244)
T PRK07952 61 GIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD---GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSV 130 (244)
T ss_pred CCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc---cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34455678899987532 2233334333321 11 1135899999997777778888887777777888
Q ss_pred eeehhhhHH
Q 006411 476 IFVDEIDSL 484 (646)
Q Consensus 476 IFIDEIDsL 484 (646)
+|++--|-+
T Consensus 131 ~~it~~~l~ 139 (244)
T PRK07952 131 LIITVADIM 139 (244)
T ss_pred EEEEHHHHH
Confidence 888654433
No 261
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=54.31 E-value=54 Score=36.08 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHh-hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 455 GEGEKLVRALFGVA-SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 455 Gesek~Vr~lF~~A-r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
|+-.+.|....+.- ...-|-|+||||+.-|-- ...+.|-..|+.--
T Consensus 278 ~eiNkvVn~Yid~GvAElvPGVLFIDEVhMLDi---------------------------------EcFTyL~kalES~i 324 (456)
T KOG1942|consen 278 GEINKVVNKYIDQGVAELVPGVLFIDEVHMLDI---------------------------------ECFTYLHKALESPI 324 (456)
T ss_pred HHHHHHHHHHHhcchhhhcCcceEeeehhhhhh---------------------------------HHHHHHHHHhcCCC
Confidence 33444444444432 234699999999987632 12233333343322
Q ss_pred CCCCcEEEEEecCC-------------CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 534 SGSEQILLVGATNR-------------PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 534 ~~~~~VlVIaATNr-------------Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
. -+||+|||| |..|.+.|+.|+-- + ++.-|+..+++.+++.
T Consensus 325 a----PivifAsNrG~~~irGt~d~~sPhGip~dllDRl~I---i--rt~~y~~~e~r~Ii~~ 378 (456)
T KOG1942|consen 325 A----PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI---I--RTLPYDEEEIRQIIKI 378 (456)
T ss_pred C----ceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeE---E--eeccCCHHHHHHHHHH
Confidence 2 367788887 77888888876522 2 3345788999988753
No 262
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=54.14 E-value=25 Score=33.98 Aligned_cols=95 Identities=12% Similarity=0.191 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHhhhcC-CeeeeehhhhHHh-hhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 456 EGEKLVRALFGVASCRQ-PAVIFVDEIDSLL-SQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~-~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.....+..+++...... ..||+|||++.+. . .+ ....++..|...++...
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~---------------------~~-------~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA---------------------SE-------EDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC---------------------TT-------TTHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc---------------------cc-------chHHHHHHHHHHHhhcc
Confidence 34566777777766543 4999999999997 3 11 12456777888887755
Q ss_pred CCCCcEEEEEecCCCCcC------CHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQEL------DEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~L------DpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
. ..++.+|.++...... +..+..|+.. ++++. ++-.+...++.+.
T Consensus 153 ~-~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~----l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 153 S-QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKP----LSKEEAREFLKEL 203 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE--------HHHHHHHHHHH
T ss_pred c-cCCceEEEECCchHHHHHhhcccCccccccce-EEEee----CCHHHHHHHHHHH
Confidence 4 3344444444331111 1112225555 56655 4556666666553
No 263
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=53.81 E-value=1e+02 Score=31.94 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccc
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLT 560 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFD 560 (646)
..|.||..|+.- ..++++|.+|..|..|-|.+++|+-
T Consensus 70 A~NaLLK~LEEP---p~~~~fiL~t~~~~~llpTI~SRc~ 106 (206)
T PRK08485 70 AQNALLKILEEP---PKNICFIIVAKSKNLLLPTIRSRLI 106 (206)
T ss_pred HHHHHHHHhcCC---CCCeEEEEEeCChHhCchHHHhhhe
Confidence 468899888873 3578888888889999999998764
No 264
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=53.50 E-value=33 Score=38.04 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=20.1
Q ss_pred HHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 461 VRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 461 Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
+..+++.+....|.+|+||+|..+..
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhhc
Confidence 45566666777899999999988865
No 265
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=53.12 E-value=45 Score=29.68 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHH
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSL 484 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL 484 (646)
........+.+........+|+|||+|.+
T Consensus 71 ~~~~l~~~~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 71 TSDELRSLLIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp -HHHHHHHHHHHHHHCTEEEEEEETTHHH
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeChHhc
Confidence 34555566666666666679999999986
No 266
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.66 E-value=41 Score=36.10 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred ccccccCCC----------C---chHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 445 KGLLLFGPP----------I---GEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 445 rGVLLyGPP----------v---Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
--||+-||| . +....++..+++.+...+|.+++++++-.|+.
T Consensus 60 ~dvl~gg~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~ 114 (315)
T TIGR00675 60 FDILLGGFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVS 114 (315)
T ss_pred cCEEEecCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHh
Confidence 367777888 1 12234677888888899999999999999986
No 267
>CHL00195 ycf46 Ycf46; Provisional
Probab=51.59 E-value=2.1e+02 Score=33.08 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=37.7
Q ss_pred CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC
Q 006411 472 QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL 551 (646)
Q Consensus 472 aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L 551 (646)
.|+|+++-|+..++. . ....+ .+..|...+... .+.+||.+.+ ..|
T Consensus 81 ~~~~~vl~d~h~~~~---------------------~------~~~~r-~l~~l~~~~~~~----~~~~i~~~~~--~~~ 126 (489)
T CHL00195 81 TPALFLLKDFNRFLN---------------------D------ISISR-KLRNLSRILKTQ----PKTIIIIASE--LNI 126 (489)
T ss_pred CCcEEEEecchhhhc---------------------c------hHHHH-HHHHHHHHHHhC----CCEEEEEcCC--CCC
Confidence 378999999998875 1 11223 333344444442 2345555543 456
Q ss_pred CHHHHhccccEEEeCCCCC
Q 006411 552 DEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 552 DpALlRRFDr~I~IplPd~ 570 (646)
++.|.+ +-..+.+|+|+.
T Consensus 127 p~el~~-~~~~~~~~lP~~ 144 (489)
T CHL00195 127 PKELKD-LITVLEFPLPTE 144 (489)
T ss_pred CHHHHh-ceeEEeecCcCH
Confidence 666655 446789999984
No 268
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=49.42 E-value=76 Score=36.98 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL 464 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l 464 (646)
..+.+...+|+|...+...+.+.|..-. .....|||.|-.+.++|-..|+|
T Consensus 216 ~~~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraI 266 (550)
T COG3604 216 SEVVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAI 266 (550)
T ss_pred cchhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHH
Confidence 3447788999999998888888887622 22467999999955555444444
No 269
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.25 E-value=30 Score=36.26 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.....+.+..+.+.-+.+.-.||+||-++.++. + + +..-+.+|++.+..+.
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~----------------------~--~-----~~~~vl~fm~~~r~l~ 155 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFAT----------------------Y--D-----SEDAVLNFMTFLRKLS 155 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhh----------------------c--c-----cHHHHHHHHHHHHHHH
Confidence 445566778888888888899999999998876 1 1 2334567888887776
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhcc
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRL 559 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRF 559 (646)
+ .++| |.-|-+|..+|++++-|+
T Consensus 156 d-~gKv--IilTvhp~~l~e~~~~ri 178 (235)
T COG2874 156 D-LGKV--IILTVHPSALDEDVLTRI 178 (235)
T ss_pred h-CCCE--EEEEeChhhcCHHHHHHH
Confidence 5 3333 344667999999988753
No 270
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=48.84 E-value=43 Score=36.65 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
+..+..+-..++...+.+|+||-|-++.+
T Consensus 119 eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 119 EQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 33444444445566777888877777764
No 271
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.44 E-value=1.3e+02 Score=36.08 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=16.8
Q ss_pred CCCCccHHHHHHHHhhcCCCC
Q 006411 606 DMQPVTLQDFENALPQVRASV 626 (646)
Q Consensus 606 ~~~~Vt~eDFe~AL~kvrPSv 626 (646)
+...++.+|++.|+++-++..
T Consensus 383 ~~~~I~ae~Ve~a~~~~~~~e 403 (647)
T COG1067 383 GRKLITAEDVEEALQKRELRE 403 (647)
T ss_pred CcccCcHHHHHHHHHhhhhHH
Confidence 345699999999999976644
No 272
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=46.30 E-value=72 Score=38.68 Aligned_cols=77 Identities=16% Similarity=0.313 Sum_probs=51.2
Q ss_pred cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCc
Q 006411 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQE 550 (646)
Q Consensus 471 ~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~ 550 (646)
..|.+|+|||+-.++. . ......+.+++..+.. .+..++++|-.|.+
T Consensus 626 gr~~ii~iDEaw~~l~---------------------~-------~~~~~~i~~~~kt~RK-----~ng~~~~~TQs~~D 672 (789)
T PRK13853 626 GRRFVMSCDEFRAYLL---------------------N-------PKFAAVVDKFLLTVRK-----NNGMLILATQQPEH 672 (789)
T ss_pred CCcEEEEEechhHHhC---------------------C-------HHHHHHHHHHHHHHHH-----cCeEEEEecCCHHH
Confidence 4799999999988875 1 1123345555555522 35677788888776
Q ss_pred CC-----HHHHhccccEEEeCCCCC---------CCcHHHHHHH
Q 006411 551 LD-----EAARRRLTKRLYIPLPSS---------GYSGSDMKNL 580 (646)
Q Consensus 551 LD-----pALlRRFDr~I~IplPd~---------GySGADL~~L 580 (646)
+- .+++.-.+-+|++|-|.. |+|..++..|
T Consensus 673 ~~~s~~~~~i~~n~~t~I~Lpn~~a~~~~~~~~fgLs~~e~~~i 716 (789)
T PRK13853 673 VLESPLGASLVAQCMTKIFYPSPTADRSAYIDGLKCTEKEFQAI 716 (789)
T ss_pred HHcCchHHHHHHhCCeEEEcCCcccchHHHHHhcCCCHHHHHHH
Confidence 54 456668888999999865 5555555544
No 273
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=45.72 E-value=58 Score=34.04 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=48.5
Q ss_pred HHHHHHHhh-hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcE
Q 006411 461 VRALFGVAS-CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539 (646)
Q Consensus 461 Vr~lF~~Ar-~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~V 539 (646)
+..+.+... ...+-||||||+|.+-+ + -+.++|..+.-+-. ..+|
T Consensus 160 ~~~~~~~l~~~~~~iViiIDdLDR~~~-----------------------------~----~i~~~l~~ik~~~~-~~~i 205 (325)
T PF07693_consen 160 ISKIKKKLKESKKRIVIIIDDLDRCSP-----------------------------E----EIVELLEAIKLLLD-FPNI 205 (325)
T ss_pred HHHHHHhhhcCCceEEEEEcchhcCCc-----------------------------H----HHHHHHHHHHHhcC-CCCe
Confidence 334443333 35688999999998754 0 12333444433333 2567
Q ss_pred EEEEecCCCC---------------cCCHHHHh-ccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 540 LLVGATNRPQ---------------ELDEAARR-RLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 540 lVIaATNrPd---------------~LDpALlR-RFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
++|.+.+.-. ..-...+. .|+..+.+|.|+. .++...+...
T Consensus 206 ~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~----~~~~~~~~~~ 262 (325)
T PF07693_consen 206 IFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSP----SDLERYLNEL 262 (325)
T ss_pred EEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCH----HHHHHHHHHH
Confidence 7777765321 11223333 5677788888764 6677776655
No 274
>PRK05541 adenylylsulfate kinase; Provisional
Probab=45.03 E-value=97 Score=29.65 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=28.1
Q ss_pred CCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 443 PGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 443 PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
++.-|+|.|||+.++....+.+..........++|+|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567889999977777888888777765556677884
No 275
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=44.93 E-value=78 Score=33.11 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=46.7
Q ss_pred ccCCCCcccccccChHH----HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeee
Q 006411 402 MDRDPHVRWDDIAGLEH----AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIF 477 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~----~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIF 477 (646)
.+..-+..+.|+-+... +...+...+.+ |. -+.+++|||||+.++..+.-++-..+.....+|+|
T Consensus 70 ~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~-------~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f 138 (254)
T COG1484 70 FPAKKTFEEFDFEFQPGIDKKALEDLASLVEF-------FE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF 138 (254)
T ss_pred CCccCCcccccccCCcchhHHHHHHHHHHHHH-------hc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE
Confidence 34445566667666543 33333333322 11 35899999999767777777777777777789999
Q ss_pred ehhhhHHh
Q 006411 478 VDEIDSLL 485 (646)
Q Consensus 478 IDEIDsL~ 485 (646)
+-=-|-+-
T Consensus 139 ~~~~el~~ 146 (254)
T COG1484 139 ITAPDLLS 146 (254)
T ss_pred EEHHHHHH
Confidence 86666554
No 276
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=44.59 E-value=1.5e+02 Score=32.52 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=8.0
Q ss_pred cEEEEEecCCC
Q 006411 538 QILLVGATNRP 548 (646)
Q Consensus 538 ~VlVIaATNrP 548 (646)
++.||+||+.+
T Consensus 274 ~~rii~~t~~~ 284 (441)
T PRK10365 274 DVRLIAATHRD 284 (441)
T ss_pred ceEEEEeCCCC
Confidence 46788888774
No 277
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=44.48 E-value=1.3e+02 Score=32.51 Aligned_cols=121 Identities=20% Similarity=0.313 Sum_probs=67.4
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..++.+..+-+.+....|.+|++ ||++.++....+..++.-..+.|. .+ .............
T Consensus 62 ~Gg~e~l~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~~v~~~~~~~~~~~vv~~~~~---gf---~~~~~~G~~~a~~ 135 (399)
T cd00316 62 FGGGEKLLEAIINELKRYKPKVIFVYTTCTTELIGDDIEAVAKEASKEIGIPVVPASTP---GF---RGSQSAGYDAAVK 135 (399)
T ss_pred eCCHHHHHHHHHHHHHHcCCCEEEEecCchhhhhccCHHHHHHHHHHhhCCceEEeeCC---CC---cccHHHHHHHHHH
Confidence 5668899999999999888888876 888888863111111111111111 01 1111123345666
Q ss_pred HHHHHHcCC----CCCCCcEEEEEecCCCC-cCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 524 QFLIEMEGF----DSGSEQILLVGATNRPQ-ELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 524 eLL~eLDGl----~~~~~~VlVIaATNrPd-~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
.++.++..- ......|-+|+.++... ++ ..+.| .+.-.+.. .|+.|-+-+||..+-+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~-~el~~ll~~~G~~v~~-~~~~~~s~~~i~~~~~ 200 (399)
T cd00316 136 AIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDL-RELKRLLEEMGIRVNA-LFDGGTTVEELRELGN 200 (399)
T ss_pred HHHHHHhcccCcCCCCCCcEEEECCCCCchhhH-HHHHHHHHHcCCcEEE-EcCCCCCHHHHHhhcc
Confidence 666666652 22345688999888765 22 23333 56555422 3333557777777543
No 278
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=43.40 E-value=43 Score=32.87 Aligned_cols=41 Identities=27% Similarity=0.157 Sum_probs=32.5
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
.-|.|.|.|..++....+.+-+........+++||- |.+-.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhh
Confidence 457899999777788888888888888899999976 66643
No 279
>PF14516 AAA_35: AAA-like domain
Probab=43.07 E-value=56 Score=35.28 Aligned_cols=16 Identities=50% Similarity=0.976 Sum_probs=14.5
Q ss_pred cCCeeeeehhhhHHhh
Q 006411 471 RQPAVIFVDEIDSLLS 486 (646)
Q Consensus 471 ~aPsIIFIDEIDsL~~ 486 (646)
..|-||||||||.++.
T Consensus 126 ~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFE 141 (331)
T ss_pred CCCEEEEEechhhhcc
Confidence 5799999999999986
No 280
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=42.49 E-value=2.3e+02 Score=34.31 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=32.4
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCc---cccccCCCCchHHHHHHHHHHH
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK---GLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~Ppr---GVLLyGPPvGesek~Vr~lF~~ 467 (646)
|-.|-|-+.+|.-|.-.+ +..-.-...-+.+-| .|++.|-|.-.+.+.++.+-..
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~f 401 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAF 401 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhcc
Confidence 456889998888764332 221111222233334 4999999966666777666443
No 281
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=42.08 E-value=40 Score=31.73 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=30.3
Q ss_pred ccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCe
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPA 474 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPs 474 (646)
++|=++..+.|...+.. .....++.++|+|||+-++...++.++..+......
T Consensus 2 fvgR~~e~~~l~~~l~~---------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~ 54 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA---------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY 54 (185)
T ss_dssp -TT-HHHHHHHHHTTGG---------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHHHH---------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE
Confidence 35666666666665531 112335899999999888889999999988877444
No 282
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=41.45 E-value=35 Score=40.59 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=37.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG 466 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~ 466 (646)
..|+..|++|.|.+++++.|...+.. .+.+||+|||+.++...++.+-+
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~ 72 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAE 72 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHH
Confidence 45678999999999999998877754 24799999995555555555443
No 283
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=41.00 E-value=23 Score=43.57 Aligned_cols=32 Identities=28% Similarity=0.162 Sum_probs=22.4
Q ss_pred EEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 539 ILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 539 VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+-||++.|.-+......+.|...-|+|+.|+.
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~ 491 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSS 491 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcH
Confidence 45677778777666655556556788999975
No 284
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=41.00 E-value=42 Score=32.95 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
+....+..+.+.+....|++|+||-|.+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 81 EQGVAIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3344566677777777899999999999875
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=40.35 E-value=45 Score=35.96 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
++-.+++.+...+|.+++|+++-.|..
T Consensus 96 L~~~~~r~I~~~~P~~fv~ENV~gl~~ 122 (328)
T COG0270 96 LFLEFIRLIEQLRPKFFVLENVKGLLS 122 (328)
T ss_pred eeHHHHHHHHhhCCCEEEEecCchHHh
Confidence 466777788889999999999999987
No 286
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.60 E-value=2.7e+02 Score=31.25 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh----ccccEEEeCCCCCCCcHHHHHHHH
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR----RLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR----RFDr~I~IplPd~GySGADL~~Lc 581 (646)
+.++...++......+.++|+-||..+..+...+.+ .++ .+-+..-|+--++.-+-+++
T Consensus 273 l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 273 LAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred HHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EEEEEeccCCCcchHHHHHH
Confidence 455555556554323578888888888888755554 123 34466666644444444443
No 287
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.86 E-value=1.8e+02 Score=32.59 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhh
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLS 486 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~ 486 (646)
+|..++....+-+.++.+.|.+|+| |+|++++.
T Consensus 67 ~Gg~~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~~v~~ 109 (435)
T cd01974 67 FGGQNNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLNAFIK 109 (435)
T ss_pred ECcHHHHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHHHHHH
Confidence 5656777777777778888998886 89999886
No 288
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=38.76 E-value=82 Score=34.67 Aligned_cols=70 Identities=23% Similarity=0.234 Sum_probs=43.5
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCC-----------------c-------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPI-----------------G------------------- 455 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPv-----------------G------------------- 455 (646)
-|.|..-+++.|...+...+..+. ...|--+=|||+++ |
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 466777777777777766444332 12234455788880 0
Q ss_pred ----hHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 456 ----EGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 456 ----esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
-.++.-+.+-..+...+-+|.+|||+|.|=+
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 0122334455566677889999999998844
No 289
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=38.71 E-value=1.8e+02 Score=33.17 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeee----------hhhhHHhh
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFV----------DEIDSLLS 486 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFI----------DEIDsL~~ 486 (646)
+|..+++.+.+-+..+.+ .|.+|++ |||++++.
T Consensus 71 fGG~~kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDDi~~v~~ 114 (457)
T TIGR02932 71 FGGAKRIEEGVLTLARRYPNLRVIPIITTCSTETIGDDIEGSIR 114 (457)
T ss_pred ECcHHHHHHHHHHHHHhCCCCCEEEEECCchHHhhcCCHHHHHH
Confidence 565556666666656665 5889988 99999986
No 290
>PF05729 NACHT: NACHT domain
Probab=38.31 E-value=1.2e+02 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=16.6
Q ss_pred HHHhhhcCCeeeeehhhhHHhh
Q 006411 465 FGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 465 F~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
...+....+.+|+||.+|.+..
T Consensus 74 ~~~~~~~~~~llilDglDE~~~ 95 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEE 95 (166)
T ss_pred HHHHHcCCceEEEEechHhccc
Confidence 3344456788999999999975
No 291
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=38.20 E-value=1.4e+02 Score=31.28 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 455 GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 455 Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
.+++++ |.....|-.+.|.|||-|| .. ++-+..... .+-.+|.++..
T Consensus 144 SGGqqQ-RVAIARAL~~~P~iilADE---------------------------PT-gnLD~~t~~-~V~~ll~~~~~--- 190 (226)
T COG1136 144 SGGQQQ-RVAIARALINNPKIILADE---------------------------PT-GNLDSKTAK-EVLELLRELNK--- 190 (226)
T ss_pred CHHHHH-HHHHHHHHhcCCCeEEeeC---------------------------cc-ccCChHHHH-HHHHHHHHHHH---
Confidence 334433 5566777778999999998 11 222223333 33445544432
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIP 566 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~Ip 566 (646)
..+..||+.|. |+.+-.++|++|++.
T Consensus 191 -~~g~tii~VTH-----d~~lA~~~dr~i~l~ 216 (226)
T COG1136 191 -ERGKTIIMVTH-----DPELAKYADRVIELK 216 (226)
T ss_pred -hcCCEEEEEcC-----CHHHHHhCCEEEEEe
Confidence 12346667777 567777899998864
No 292
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=37.59 E-value=49 Score=36.77 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCC--------CCCcEEEEEecCCCC-------cCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDS--------GSEQILLVGATNRPQ-------ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~--------~~~~VlVIaATNrPd-------~LDpALlRRFDr~I~IplPd~ 570 (646)
.+++.||+.++.-.- -.-..+||++||..+ ...+|+++|+. .|++|.|..
T Consensus 251 ~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~-~i~vpY~l~ 315 (361)
T smart00763 251 KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRII-KVKVPYCLR 315 (361)
T ss_pred HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceE-EEeCCCcCC
Confidence 467788877763211 112368999999883 67899999998 789998864
No 293
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=37.44 E-value=1.4e+02 Score=33.40 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=55.1
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..++..+.+-+..+.+.|.+|+| |||++++....+-......++..-....++ ..........+.
T Consensus 66 fGg~~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi~~v~~~~~~~~~~~~~~vi~v~t~gF~---g~~~~G~~~a~~ 142 (429)
T cd03466 66 YGGEKNLKKGLKNVIEQYNPEVIGIATTCLSETIGEDVPRIIREFREEVDDSEPKIIPASTPGYG---GTHVEGYDTAVR 142 (429)
T ss_pred ECcHHHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCHHHHHHHHhhcccCCCCcEEEEECCCCc---ccHHHHHHHHHH
Confidence 5555666666777777778998886 899998762110000000111111111111 111123455666
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCCcCCH--HHHhccccEE
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQELDE--AARRRLTKRL 563 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd~LDp--ALlRRFDr~I 563 (646)
.++.++..-......|-+|+-.+.|.+++. .++..|.-.+
T Consensus 143 al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~ 184 (429)
T cd03466 143 SIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEY 184 (429)
T ss_pred HHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCe
Confidence 777766553333456888876666655443 2333555444
No 294
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=37.35 E-value=67 Score=35.01 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=63.9
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
.|.-++..+.+-+.++...|.+||| ||+++++.....-....-..+.|. -+ ...........+.
T Consensus 56 ~G~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~~vi~v~~~---gf---~~~~~~G~~~a~~ 129 (398)
T PF00148_consen 56 FGGEEKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDDIEAVARELQEEYGIPVIPVHTP---GF---SGSYSQGYDAALR 129 (398)
T ss_dssp HTSHHHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSSEEEEEE-----TT---SSSHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCCHHHHHHHhhcccCCcEEEEECC---Cc---cCCccchHHHHHH
Confidence 6666777788888888888999987 888988862110000000111110 00 1122234567777
Q ss_pred HHHHHH-c-CCCCCCCcEEEEEecCCC-CcCCH--HHHhccccEEEeCCCCCCCcHHHHHHH
Q 006411 524 QFLIEM-E-GFDSGSEQILLVGATNRP-QELDE--AARRRLTKRLYIPLPSSGYSGSDMKNL 580 (646)
Q Consensus 524 eLL~eL-D-Gl~~~~~~VlVIaATNrP-d~LDp--ALlRRFDr~I~IplPd~GySGADL~~L 580 (646)
.++..+ + .-......|-+|+.++.. .++.. .+++.+.-.+..-+|. +-+..||+.+
T Consensus 130 ~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~-~~t~~e~~~~ 190 (398)
T PF00148_consen 130 ALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPG-GTTLEEIRKA 190 (398)
T ss_dssp HHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEET-TBCHHHHHHG
T ss_pred HHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCC-CCCHHHHHhC
Confidence 888888 2 444445678888888754 23321 2333555544433322 2244555543
No 295
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=37.24 E-value=39 Score=38.86 Aligned_cols=90 Identities=20% Similarity=0.312 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhc----CCe-eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 460 LVRALFGVASCR----QPA-VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 460 ~Vr~lF~~Ar~~----aPs-IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
++.++|+..-.. .|- |+||||+.-|+. . . +..++.. +.++=.+-.
T Consensus 238 LLsELfe~LPEvGD~dkPklVfFfDEAHLLF~---------------------d----a----~kall~~-ieqvvrLIR 287 (502)
T PF05872_consen 238 LLSELFEQLPEVGDLDKPKLVFFFDEAHLLFN---------------------D----A----PKALLDK-IEQVVRLIR 287 (502)
T ss_pred HHHHHHHhCccCCCCCCceEEEEEechhhhhc---------------------C----C----CHHHHHH-HHHHHHHhh
Confidence 556677765332 455 566999998885 1 1 1222222 222222222
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
..+|=|...|-+|.+|+..++.-+..+|.--+ ..||+.|-+++-.
T Consensus 288 -SKGVGv~fvTQ~P~DiP~~VL~QLGnrIQHaL--RAfTP~DqKavk~ 332 (502)
T PF05872_consen 288 -SKGVGVYFVTQNPTDIPDDVLGQLGNRIQHAL--RAFTPKDQKAVKA 332 (502)
T ss_pred -ccCceEEEEeCCCCCCCHHHHHhhhhHHHHHH--hcCCHhHHHHHHH
Confidence 46788999999999999999994444432111 2678888877643
No 296
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=36.56 E-value=1.2e+02 Score=36.31 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=51.9
Q ss_pred hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCC
Q 006411 470 CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549 (646)
Q Consensus 470 ~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd 549 (646)
...|.+++|||+-.++. . ......+.+++..+... +..++++|..|.
T Consensus 627 ~~~~~~i~iDEa~~ll~---------------------~-------~~~~~~i~~~~r~~RK~-----~~~~~~~TQ~~~ 673 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLG---------------------N-------PVFAAKIRDWLKTLRKA-----NGIVVLATQSIN 673 (785)
T ss_pred CCCCeEEEEechhhhcC---------------------C-------HHHHHHHHHHHHHHHHc-----CCEEEEEeCCHH
Confidence 34799999999998874 1 12244566666666543 456778888877
Q ss_pred cCC-----HHHHhccccEEEeCCCCC---------CCcHHHHHHH
Q 006411 550 ELD-----EAARRRLTKRLYIPLPSS---------GYSGSDMKNL 580 (646)
Q Consensus 550 ~LD-----pALlRRFDr~I~IplPd~---------GySGADL~~L 580 (646)
++. .+++.-.+-+|.++.|.. |+|..++..|
T Consensus 674 d~~~~~~~~~il~n~~~ki~l~~~~~~~~~~~~~~~ls~~e~~~i 718 (785)
T TIGR00929 674 DALGSRIADSILEQCATKIFLPNPEADREDYAEGFKLTEREFELL 718 (785)
T ss_pred HHhcCchHHHHHHhCCEEEEcCCCCCCHHHHHHHcCCCHHHHHHH
Confidence 653 456667888889988854 5555555544
No 297
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=36.37 E-value=5e+02 Score=27.46 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhccccEEEeCCC
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFDr~I~IplP 568 (646)
......|...+....+ ..++|+.+++.++. +. ..+..+.....+..|
T Consensus 78 ~~~~~~L~~~l~~~~~--~~~li~~~~~~~d~r~k~~-k~l~k~~~~~~~~~~ 127 (326)
T PRK07452 78 EELLAELERTLPLIPE--NTHLLLTNTKKPDGRLKST-KLLQKLAEEKEFSLI 127 (326)
T ss_pred HHHHHHHHHHHcCCCC--CcEEEEEeCCCcchHHHHH-HHHHHceeEEEecCC
Confidence 3456678888887644 45666665554432 21 222334456666555
No 298
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.32 E-value=89 Score=34.11 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=30.2
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhh
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEID 482 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEID 482 (646)
..+++|||||+.+...++.++-..+....-+|+|+.-.|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 378999999977777777787777766677888886544
No 299
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=35.91 E-value=56 Score=36.33 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=39.5
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR 471 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~ 471 (646)
+++-|++++++.|.+++..- ..+++.-.+=+||.||++|++...++.+-.....+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~A------A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSA------AQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHH------HhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 48999999999998876552 22333444678899999888877777776665554
No 300
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=35.85 E-value=1.2e+02 Score=33.52 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=23.3
Q ss_pred EEEEecCC------------CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 540 LLVGATNR------------PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 540 lVIaATNr------------Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
+||+|||| |.-|+-.++.|. +-+. +.-|+-.|++.+++
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lDR~---lII~--t~py~~~d~~~IL~ 368 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLDRM---LIIS--TQPYTEEDIKKILR 368 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhhhh---heee--cccCcHHHHHHHHH
Confidence 66778886 666777776554 2222 22467777777764
No 301
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=35.41 E-value=1.7e+02 Score=33.56 Aligned_cols=133 Identities=15% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCccccccCCC---------------CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchh
Q 006411 443 PGKGLLLFGPP---------------IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHI 497 (646)
Q Consensus 443 PprGVLLyGPP---------------vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~ 497 (646)
-.+|++.+|+| +|.-+++-+.+-+..+.+.|.+||+ |||++++.+...-.+.--.
T Consensus 53 ~~~g~~~~~~~r~~~tdl~E~Di~~~~g~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV 132 (457)
T CHL00073 53 NALGVMIFAEPRYAMAELEEGDISAQLNDYEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIV 132 (457)
T ss_pred ccccCcccCCccceecccCchhhhhhcCCHHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEE
Confidence 34788899988 3555556666677777788999996 9999998732111111112
Q ss_pred hhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC------------------------CCCcEEEEEecCCCCcCCH
Q 006411 498 KLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS------------------------GSEQILLVGATNRPQELDE 553 (646)
Q Consensus 498 ~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~------------------------~~~~VlVIaATNrPd~LDp 553 (646)
.+.|.- +++ .-..+++.....++.+++....+... ....|.++|.-| ...++.
T Consensus 133 ~v~~~G-f~~-~~tqg~d~~Laa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~-~~~~~~ 209 (457)
T CHL00073 133 VARANG-LDY-AFTQGEDTVLAAMAHRCPEQEVSTSESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLP-STVASQ 209 (457)
T ss_pred EEeCCC-ccC-cCCcchhHHHHHhHHhhhhhhcCccccccccccccccccccccccccccCCCCcEEEEEecC-cccHHH
Confidence 222210 000 00222333333444444444333211 234699999888 443433
Q ss_pred --HHHhccccEEEeCCCCCCCcHHHHHHH
Q 006411 554 --AARRRLTKRLYIPLPSSGYSGSDMKNL 580 (646)
Q Consensus 554 --ALlRRFDr~I~IplPd~GySGADL~~L 580 (646)
.++.++--++..-+|+. +..||..+
T Consensus 210 i~~lL~~lGI~v~~~lp~~--~~~eL~~~ 236 (457)
T CHL00073 210 LTLELKRQGIKVSGWLPSQ--RYTDLPSL 236 (457)
T ss_pred HHHHHHHcCCeEeEEeCCC--CHHHHHhh
Confidence 23337777776666765 33455444
No 302
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=34.87 E-value=93 Score=32.96 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhh--hcCCeeeeehhhhHHhh
Q 006411 457 GEKLVRALFGVAS--CRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 457 sek~Vr~lF~~Ar--~~aPsIIFIDEIDsL~~ 486 (646)
....+..+...+. ...|-||+|||-|..+.
T Consensus 126 ~~~~l~~li~~l~~~~~~kvvlLIDEYD~p~~ 157 (284)
T PF09820_consen 126 LADSLKDLIEYLYEKYGKKVVLLIDEYDKPIN 157 (284)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEecCccHHHH
Confidence 3444555555442 34699999999999886
No 303
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.11 E-value=3e+02 Score=30.66 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=47.7
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhccc----ccccchhhhhhhhhhccccCCCCCchhhH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLP----YMHVHHIKLFCLKRFYFQRKSDGEHESSR 519 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~----~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ 519 (646)
+|..++..+.+-+..+.+.|.+||| |+|+.++..... ..+..-..+.| ..+. ........
T Consensus 63 ~Gg~~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~t---pgf~---g~~~~G~~ 136 (428)
T cd01965 63 FGGEDNLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYAST---PSFK---GSHETGYD 136 (428)
T ss_pred ECcHHHHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeC---CCCC---CcHHHHHH
Confidence 4555666666666767788988886 888988752110 00111111111 1111 11122345
Q ss_pred HHHHHHHHHHcCCC--CCCCcEEEEEecCCCC
Q 006411 520 RLKTQFLIEMEGFD--SGSEQILLVGATNRPQ 549 (646)
Q Consensus 520 rilneLL~eLDGl~--~~~~~VlVIaATNrPd 549 (646)
..+..|+.++..-. .....|-+|+-.+...
T Consensus 137 ~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~ 168 (428)
T cd01965 137 NAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTP 168 (428)
T ss_pred HHHHHHHHHHhcccCCCCCCeEEEECCCCCCc
Confidence 56667777665533 2345688888776543
No 304
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=33.12 E-value=83 Score=33.04 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=43.6
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCcc-ccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHH
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKG-LLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSL 484 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprG-VLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL 484 (646)
.++++++-.+...+.|++.+.. ++| ||+.||+..++...++.+........-.|+.|+|-..+
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~--------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~ 120 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK--------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY 120 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee
Confidence 4677888777777777666543 244 78999998888888888877654333457888654433
No 305
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=32.80 E-value=73 Score=32.60 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 457 GEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 457 sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
-+..+..+-..++.+.|.+||||.+-.+..
T Consensus 125 ~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 125 MDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 455556666667778899999999998865
No 306
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=32.64 E-value=59 Score=36.42 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=44.1
Q ss_pred hhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-
Q 006411 391 PRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS- 469 (646)
Q Consensus 391 p~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar- 469 (646)
..+++.+...|...-..++|.|..-....+.+|. ++++ ..+.-|..-|=.||. .++..+-+.|+
T Consensus 215 ~efi~rlq~aine~i~~ts~~d~~~~s~~~h~l~------mk~~----~~geI~ls~lSdg~R-----t~~Alvadiarr 279 (440)
T COG3950 215 SEFIARLQDAINENISSTSWNDLLIGSQRKHELF------MKHG----NGGEIPLSELSDGPR-----TKFALVADIARR 279 (440)
T ss_pred HHHHHHHHHHHhhhcccCchhhhhhhcccchHHH------HccC----CCCccchhhcccchH-----HHHHHHHHHHHH
Confidence 3455555555554455588988765554444432 2222 122334555555655 23333333333
Q ss_pred -------------hcCCeeeeehhhhHHhh
Q 006411 470 -------------CRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 470 -------------~~aPsIIFIDEIDsL~~ 486 (646)
...|-|++|||||-.+-
T Consensus 280 ~v~LNp~Lsd~la~~tpgivLiDeIdlflh 309 (440)
T COG3950 280 CVVLNPYLSDALAKLTPGIVLIDEIDLFLH 309 (440)
T ss_pred HhhcChhhcchhhcCCCceEEeehhhhhcC
Confidence 33588999999997764
No 307
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.70 E-value=1.8e+02 Score=33.21 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccC-CCCCchhhHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK-SDGEHESSRRLK 522 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~-s~~~~e~s~ril 522 (646)
+|..+++.+.+-+..+.+.|.+||| |||++++.....-.+..-..+.|. .+... ..+.......++
T Consensus 101 fGg~~kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t~---Gf~g~~~~G~~~a~~al~ 177 (475)
T PRK14478 101 FGGEKKLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNSP---GFVGNKNLGNKLAGEALL 177 (475)
T ss_pred eCCHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEECC---CcccchhhhHHHHHHHHH
Confidence 5766667777777777788999887 899999862211111111111111 11100 011122223344
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCCcCCH--HHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDE--AARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd~LDp--ALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
.+|+..++.-......|-+|+-.+.+.+++. .++..|.-.+..-.| .+-+-.||+.+-.
T Consensus 178 ~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~~Gl~v~~~~~-~~~s~eei~~~~~ 238 (475)
T PRK14478 178 DHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDRLGIRVVACIT-GDARYDDVASAHR 238 (475)
T ss_pred HHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEcC-CCCCHHHHHhccc
Confidence 4444322222222456889998777665532 233356655443232 2446777777543
No 308
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=31.64 E-value=92 Score=38.13 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=42.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
..+++.-|+.+ +..+..+-...+...+.+|+||-|.++.++ ..++ .+..+.......+++++
T Consensus 113 ~~llv~~~~~~--E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r---------------~E~~-g~~g~~~~~~q~rl~~q 174 (790)
T PRK09519 113 DSLLVSQPDTG--EQALEIADMLIRSGALDIVVIDSVAALVPR---------------AELE-GEMGDSHVGLQARLMSQ 174 (790)
T ss_pred hHeEEecCCCH--HHHHHHHHHHhhcCCCeEEEEcchhhhcch---------------hhcc-CCCCcccHHHHHHHHHH
Confidence 34444444422 334444444455567899999988888751 0000 11111111223455677
Q ss_pred HHHHHcCCCCCCCcEEEEEec
Q 006411 525 FLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaAT 545 (646)
+|..|..+.. ..+|.||+|-
T Consensus 175 ~L~~L~~~l~-~~nvtvi~TN 194 (790)
T PRK09519 175 ALRKMTGALN-NSGTTAIFIN 194 (790)
T ss_pred HHHHHHHHHH-hCCCEEEEEe
Confidence 7777776654 3467776663
No 309
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=31.63 E-value=4e+02 Score=30.38 Aligned_cols=98 Identities=18% Similarity=0.335 Sum_probs=53.2
Q ss_pred HHHHHHHHHhh--hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCC-
Q 006411 459 KLVRALFGVAS--CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSG- 535 (646)
Q Consensus 459 k~Vr~lF~~Ar--~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~- 535 (646)
.+++.+....+ .++.=+|+|||++.|.. -+ .. ..-....+.+++.+|.+.++
T Consensus 224 ~~Lk~L~~~lr~aGy~GLlI~lDE~e~l~k---------------------l~-~~---~~R~~~ye~lr~lidd~~~G~ 278 (416)
T PF10923_consen 224 DFLKGLARFLRDAGYKGLLILLDELENLYK---------------------LR-ND---QAREKNYEALRQLIDDIDQGR 278 (416)
T ss_pred HHHHHHHHHHHHcCCCceEEEEechHHHHh---------------------cC-Ch---HHHHHHHHHHHHHHHHHhcCC
Confidence 34455444443 35788999999999975 11 11 11245567777777776652
Q ss_pred CCcEEEEEecCCCCcC-C--------HHHHhccccEEE----eCCCCC------CCcHHHHHHHHH
Q 006411 536 SEQILLVGATNRPQEL-D--------EAARRRLTKRLY----IPLPSS------GYSGSDMKNLVK 582 (646)
Q Consensus 536 ~~~VlVIaATNrPd~L-D--------pALlRRFDr~I~----IplPd~------GySGADL~~Lc~ 582 (646)
-.++.+|++.- |+-+ | +||..|+..... +.-|.. .|+..+|..|..
T Consensus 279 ~~gL~~~~~gT-Pef~eD~rrGv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~ 343 (416)
T PF10923_consen 279 APGLYFVFAGT-PEFFEDGRRGVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQPLTPEELLELLE 343 (416)
T ss_pred CCceEEEEeeC-HHHhhCccccccccHHHHHHHhccccccccccCccCceecCCCCCHHHHHHHHH
Confidence 23444433322 3333 2 466666654321 111111 788888887664
No 310
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=31.57 E-value=3.9e+02 Score=29.87 Aligned_cols=122 Identities=18% Similarity=0.270 Sum_probs=64.8
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..+++.+.+-+..+.+.|.+||| |||++++.....-....-..+.|. .+. ...........+.
T Consensus 71 fGg~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~---gf~--g~~~~~G~~~a~~ 145 (426)
T cd01972 71 FGGEKKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCE---GFK--GKHWRSGFDAAFH 145 (426)
T ss_pred cchHHHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCC---ccC--CccHhHHHHHHHH
Confidence 5666666666777777788998886 899998852111001111111111 010 1011123455667
Q ss_pred HHHHHHcCC---CCCCCcEEEEEecCCCC---cCCHH-HHh---ccccEEEeCCCCCCCcHHHHHHHH
Q 006411 524 QFLIEMEGF---DSGSEQILLVGATNRPQ---ELDEA-ARR---RLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 524 eLL~eLDGl---~~~~~~VlVIaATNrPd---~LDpA-LlR---RFDr~I~IplPd~GySGADL~~Lc 581 (646)
.++..+.+- ......|=||+..+-|+ .-|-. +.| .+.-.+. ..+..|-+-+||+.+-
T Consensus 146 al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~-~~~~~~~~~~ei~~~~ 212 (426)
T cd01972 146 GILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVN-AIIAGGCSVEELERAS 212 (426)
T ss_pred HHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEE-EEeCCCCCHHHHHhcc
Confidence 777777553 12245689999888753 23333 333 5554543 2333356777777654
No 311
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=31.52 E-value=1.2e+02 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=24.2
Q ss_pred ccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHH
Q 006411 447 LLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSL 484 (646)
Q Consensus 447 VLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL 484 (646)
|+|+|.|..++....+.+-+......-.+++|++-+..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 78999997777777777777776666778888864433
No 312
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.88 E-value=3.5e+02 Score=31.31 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 455 GEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 455 Gesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
|..++....+-+..+.+.|.+|++ |+|++++.....-..+.-..+.|. .++. ........++.+
T Consensus 68 Gg~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~---~f~g---~~~~g~~~~l~~ 141 (513)
T CHL00076 68 GSQEKVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIESDSDVILADVN---HYRV---NELQAADRTLEQ 141 (513)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcccCCCEEEeCCC---CCcc---cHHHHHHHHHHH
Confidence 445666677777778889999987 999999862111111111222222 1111 112223345555
Q ss_pred HHHHHcC----------CCCCCCcEEEEEecCCC----CcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 525 FLIEMEG----------FDSGSEQILLVGATNRP----QELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 525 LL~eLDG----------l~~~~~~VlVIaATNrP----d~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
++.++-. -......|=||+.++-+ .++. .+.| .+.-.+..-.|- |-+-.||+.+-+.
T Consensus 142 lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~-eikrLL~~~Gi~vn~v~~~-g~sl~di~~~~~A 215 (513)
T CHL00076 142 IVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCR-ELKRLLQDLGIEINQIIPE-GGSVEDLKNLPKA 215 (513)
T ss_pred HHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHH-HHHHHHHHCCCeEEEEECC-CCCHHHHHhcccC
Confidence 6655422 11123568999988644 4442 3444 555555433332 5688888876543
No 313
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=30.81 E-value=90 Score=37.45 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=27.3
Q ss_pred cccChHHHHHHHHHHHHhhccCcccccc-CC-CCCccccccCCCCchHHHHHHHH
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKG-CR-SPGKGLLLFGPPIGEGEKLVRAL 464 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~-~~-~PprGVLLyGPPvGesek~Vr~l 464 (646)
.|.|.+++|..|--++.-= -+..-.+ .+ +---.|||.|-|+..+...++-+
T Consensus 450 sIyGh~~VK~AvAlaLfGG--v~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~ 502 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGG--VPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYA 502 (854)
T ss_pred hhhchHHHHHHHHHHHhcC--CccCCCCCceeccceeEEEecCCCccHHHHHHHH
Confidence 5789999888774443221 1111110 00 11235999999965555555444
No 314
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.06 E-value=1.6e+02 Score=31.03 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=24.6
Q ss_pred CCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 442 SPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 442 ~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
.+++-++|.|||+.++...+..+-..++.....|.+||
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44678889999955555555555454555556777775
No 315
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=29.94 E-value=3e+02 Score=30.21 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..++..+.+=+..+.+.|.+||| |||++++.....-....-..+.| ..+. ...........+.
T Consensus 69 ~Gg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t---~gf~--g~~~~~G~~~a~~ 143 (406)
T cd01967 69 FGGEKKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNC---EGFR--GVSQSLGHHIAND 143 (406)
T ss_pred eCcHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeC---CCee--CCcccHHHHHHHH
Confidence 4555555666666667778998886 88988876211000000011111 0110 1011223445666
Q ss_pred HHHHHHcCCC----CCCCcEEEEEecCCCCcCCH--HHHhccccEEEeCCCCCCCcHHHHHHHH
Q 006411 524 QFLIEMEGFD----SGSEQILLVGATNRPQELDE--AARRRLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 524 eLL~eLDGl~----~~~~~VlVIaATNrPd~LDp--ALlRRFDr~I~IplPd~GySGADL~~Lc 581 (646)
.++.++..-. .....|-||+..+.+.+++. .++..|.-.+..-.| .|-+-.||+.+-
T Consensus 144 al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~-~~~~~~~i~~~~ 206 (406)
T cd01967 144 AILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFT-GDGTVDELRRAH 206 (406)
T ss_pred HHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeC-CCCCHHHHhhCc
Confidence 7777775422 22456889998877664432 233366555443233 245667777653
No 316
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=29.66 E-value=3.1e+02 Score=31.63 Aligned_cols=119 Identities=20% Similarity=0.238 Sum_probs=59.7
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
.|..++..+.+-+..+...|.+|+| |++++++.....- +..-..+.|. .++ .........++.
T Consensus 67 ~G~~~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~~~~~~~~-~~pvi~v~t~---gf~---g~~~~g~~~al~ 139 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNLAAAAGLD-KSKVIVADVN---AYR---RKENQAADRTLT 139 (511)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHhccC-CCcEEEecCC---Ccc---cchhHHHHHHHH
Confidence 3444555555555666788987775 7888887521100 0000111111 111 111223345666
Q ss_pred HHHHHHcCC--C----CCCCcEEEEEecC----CCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHH
Q 006411 524 QFLIEMEGF--D----SGSEQILLVGATN----RPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 524 eLL~eLDGl--~----~~~~~VlVIaATN----rPd~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc 581 (646)
+++..+..- . .....|=|||.++ .+.++. .+.| .|.-.+.+-.|. |-+-+||+.+.
T Consensus 140 ~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~-elkrlL~~lGi~vn~v~p~-g~s~~dl~~l~ 208 (511)
T TIGR01278 140 QLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLI-ELRRLLKTLGIEVNVVAPW-GASIADLARLP 208 (511)
T ss_pred HHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHH-HHHHHHHHCCCeEEEEeCC-CCCHHHHHhcc
Confidence 666554321 1 1245689999887 334443 3444 666555443332 56778888754
No 317
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.27 E-value=3.1e+02 Score=31.71 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 458 EKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
++..+.+-+..+.+.|.+|++ |+++.++.... .+..-..+.|. .++. .........+.+++.
T Consensus 71 ekL~~aI~~~~~~~~P~~I~V~sTC~seiIGdDi~~v~~~~~--~~~~Vi~v~t~---gf~~---~~~~G~~~al~~lv~ 142 (519)
T PRK02910 71 ELLKDTLRRADERFQPDLIVVGPSCTAELLQEDLGGLAKHAG--LPIPVLPLELN---AYRV---KENWAADETFYQLVR 142 (519)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhC--CCCCEEEEecC---Cccc---ccchHHHHHHHHHHH
Confidence 455555555556778987775 89998876211 11111111111 1111 122334455566665
Q ss_pred HHcC-------CCCCCCcEEEEEecC----CCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHH
Q 006411 528 EMEG-------FDSGSEQILLVGATN----RPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 528 eLDG-------l~~~~~~VlVIaATN----rPd~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc 581 (646)
.+.. -......|-|||.++ .+.++.+ +.| .|.-.+.+-.| .|-+-.||+.+-
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~E-ikrlL~~~Gi~vn~v~p-~g~s~~di~~l~ 208 (519)
T PRK02910 143 ALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTE-LRRLLATLGIDVNVVAP-LGASPADLKRLP 208 (519)
T ss_pred HHhhhcccccccCCCCCeEEEEecCccCCCChhHHHH-HHHHHHHcCCeEEEEeC-CCCCHHHHHhcc
Confidence 5432 112245699998875 3444443 333 66655544333 466778887754
No 318
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.11 E-value=1.5e+02 Score=33.14 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHhhhcCC-eeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQP-AVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aP-sIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
+|..++..+.+-+..+.+.| .+||| |||++++.....-.+..-..+.|. .+. +...........
T Consensus 80 fGg~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~---gf~--g~s~~~G~~~a~ 154 (421)
T cd01976 80 FGGDKKLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEAVARKASKELGIPVVPVRCE---GFR--GVSQSLGHHIAN 154 (421)
T ss_pred cCCHHHHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCC---Ccc--CCcccHHHHHHH
Confidence 56666666666666777788 88876 899999752111111111122221 110 000001122334
Q ss_pred HHHHHHHcCCC----CCCCcEEEEEecCCCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 523 TQFLIEMEGFD----SGSEQILLVGATNRPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 523 neLL~eLDGl~----~~~~~VlVIaATNrPd~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
..++..|-+.. .....|-||+-.+.+.++. .+.| .+.-.+..-. ..|-+-.||+.+-+
T Consensus 155 ~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~-el~~lL~~~Gi~v~~~~-~~~~t~eei~~~~~ 219 (421)
T cd01976 155 DAIRDHILGKRNEFEPTPYDVNIIGDYNIGGDAW-ASRILLEEMGLRVVAQW-SGDGTLNEMENAHK 219 (421)
T ss_pred HHHHHHHhccCCccCCCCCeEEEEecCCCCccHH-HHHHHHHHcCCeEEEEe-CCCCCHHHHHhccc
Confidence 45555554432 2245688999888776664 2444 5655554222 23556777777654
No 319
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.82 E-value=1.1e+02 Score=30.28 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEE
Q 006411 462 RALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILL 541 (646)
Q Consensus 462 r~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlV 541 (646)
|..+..|-...|.++++||--+=+. . .++..+.++|.++. . .+..|
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD----------------------------~-~~~~~l~~~l~~~~---~--~~~ti 180 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALD----------------------------A-AAVALFAELIRAHL---A--QGGIV 180 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCC----------------------------H-HHHHHHHHHHHHHH---H--CCCEE
Confidence 4455666667899999999543221 1 22333444555442 1 13567
Q ss_pred EEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 542 VGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 542 IaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
|.+|..++.++. |+++.+..|+
T Consensus 181 ii~sH~~~~~~~------~~~~~~~~~~ 202 (207)
T PRK13539 181 IAATHIPLGLPG------ARELDLGPFA 202 (207)
T ss_pred EEEeCCchhhcc------CcEEeecCcc
Confidence 888998887775 6667766654
No 320
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=28.70 E-value=1.6e+02 Score=28.10 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=11.2
Q ss_pred cCCeeeeehhhhHH
Q 006411 471 RQPAVIFVDEIDSL 484 (646)
Q Consensus 471 ~aPsIIFIDEIDsL 484 (646)
..|++++|||+..=
T Consensus 98 ~~~~llllDEp~~g 111 (162)
T cd03227 98 KPRPLYILDEIDRG 111 (162)
T ss_pred CCCCEEEEeCCCCC
Confidence 37999999997743
No 321
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=28.68 E-value=2.4e+02 Score=29.71 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=31.7
Q ss_pred ccccccCCC-------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 445 KGLLLFGPP-------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 445 rGVLLyGPP-------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
--+|+.||| -.....++..+.+.+...+|.+++++++-.+..
T Consensus 63 ~D~l~~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~ 117 (275)
T cd00315 63 IDLLTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLT 117 (275)
T ss_pred CCEEEeCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhc
Confidence 457778888 122334677778888889999999999988875
No 322
>COG4639 Predicted kinase [General function prediction only]
Probab=28.44 E-value=87 Score=31.41 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=55.6
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
.=|+|.|+|..+....++..|.. +-+|=+|+++.+.++- ..+..+.+. ...+...
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~~-----~~~lsld~~r~~lg~~-----------------~~~e~sqk~---~~~~~~~ 57 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFLQ-----NYVLSLDDLRLLLGVS-----------------ASKENSQKN---DELVWDI 57 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCCC-----cceecHHHHHHHhhhc-----------------hhhhhcccc---HHHHHHH
Confidence 34789999988888888877743 4466678888876410 001111111 1223344
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh----------ccccEEEeCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR----------RLTKRLYIPLPS 569 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR----------RFDr~I~IplPd 569 (646)
+..++...-. .+...||=||| +++.-++ -++..|.|..|-
T Consensus 58 l~~~l~qrl~-~Gk~tiidAtn----~rr~~r~~l~~La~~y~~~~~~ivfdtp~ 107 (168)
T COG4639 58 LYKQLEQRLR-RGKFTIIDATN----LRREDRRKLIDLAKAYGYKIYAIVFDTPL 107 (168)
T ss_pred HHHHHHHHHH-cCCeEEEEccc----CCHHHHHHHHHHHHHhCCeEEEEEEeCCH
Confidence 4444433222 46789999998 3444444 356677888874
No 323
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.82 E-value=1.7e+02 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhh
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLS 486 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~ 486 (646)
+|..++..+.+=+..+.+.|.+|+| |||++++.
T Consensus 74 fGg~~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~~v~~ 116 (455)
T PRK14476 74 LGGDENVEEAILNICKKAKPKIIGLCTTGLTETRGDDVAGALK 116 (455)
T ss_pred eCCHHHHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHHHHHH
Confidence 5655666666666667778998875 89999875
No 324
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=27.81 E-value=1.8e+02 Score=28.72 Aligned_cols=71 Identities=18% Similarity=0.367 Sum_probs=37.4
Q ss_pred HHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEE
Q 006411 461 VRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQIL 540 (646)
Q Consensus 461 Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~Vl 540 (646)
+.-+|...+.....+++|||+|+=+. ....+.+..+|.++.. ..+++
T Consensus 147 Lal~lA~~~~~~~p~~ilDEvd~~LD-----------------------------~~~~~~l~~~l~~~~~----~~Q~i 193 (220)
T PF02463_consen 147 LALLLALQRYKPSPFLILDEVDAALD-----------------------------EQNRKRLADLLKELSK----QSQFI 193 (220)
T ss_dssp HHHHHHHHTCS--SEEEEESTTTTS------------------------------HHHHHHHHHHHHHHTT----TSEEE
T ss_pred cccccccccccccccccccccccccc-----------------------------cccccccccccccccc----ccccc
Confidence 34445555555566889999997654 1123345556665532 22344
Q ss_pred EEEecCCCCcCCHHHHhccccEEEeCCCCCC
Q 006411 541 LVGATNRPQELDEAARRRLTKRLYIPLPSSG 571 (646)
Q Consensus 541 VIaATNrPd~LDpALlRRFDr~I~IplPd~G 571 (646)
| +|. ++.+....|+.+.|.....|
T Consensus 194 i--~Th-----~~~~~~~a~~~~~v~~~~~g 217 (220)
T PF02463_consen 194 I--TTH-----NPEMFEDADKLIGVTMVENG 217 (220)
T ss_dssp E--E-S------HHHHTT-SEEEEEEECCTT
T ss_pred c--ccc-----cccccccccccccccccccc
Confidence 3 332 45667777888877665544
No 325
>PRK04132 replication factor C small subunit; Provisional
Probab=27.73 E-value=40 Score=41.41 Aligned_cols=40 Identities=38% Similarity=0.468 Sum_probs=31.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP 453 (646)
..+..+.+|+||+|.+.+++.|+.++.. +.. ..+||+|||
T Consensus 10 ~~k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~~i-~h~l~~g~~ 49 (846)
T PRK04132 10 VEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPP 49 (846)
T ss_pred HHhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCC-CeEEEECCC
Confidence 3456789999999999999999998865 111 237899999
No 326
>PRK09354 recA recombinase A; Provisional
Probab=27.20 E-value=1.5e+02 Score=32.99 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=13.2
Q ss_pred HHhhhcCCeeeeehhhhHHhh
Q 006411 466 GVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 466 ~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..++...+.+|+||=|-++.+
T Consensus 132 ~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred HHhhcCCCCEEEEeChhhhcc
Confidence 344555677777777766654
No 327
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.94 E-value=56 Score=35.98 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=57.4
Q ss_pred Ccc-ccccCCCCchHHHHHHHHHHHhhhcCCeeee-e-hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 444 GKG-LLLFGPPIGEGEKLVRALFGVASCRQPAVIF-V-DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 444 prG-VLLyGPPvGesek~Vr~lF~~Ar~~aPsIIF-I-DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
++| ||..||-+.++..-+.++.++..++.+--|+ | |-|+.+... -++...+|.-+.+ +..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~s--------------kkslI~QREvG~d---T~s 186 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHES--------------KKSLINQREVGRD---TLS 186 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcc--------------hHhhhhHHHhccc---HHH
Confidence 466 6678999888888899999998877766443 4 668887762 1222224422211 222
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR 557 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR 557 (646)
..+.|-..|. ..+.|++||--+..+.+--||..
T Consensus 187 F~~aLraALR----eDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 187 FANALRAALR----EDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred HHHHHHHHhh----cCCCEEEEeccccHHHHHHHHHH
Confidence 3333333332 25678888888888877777665
No 328
>PRK06762 hypothetical protein; Provisional
Probab=26.54 E-value=78 Score=29.87 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=24.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHHh
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLL 485 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~ 485 (646)
|+-|+|.|+|+.++....+.+-+.. .+.+++|+ .|.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~-~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVS-QDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEec-HHHHH
Confidence 4568899999666666666655443 34566665 36664
No 329
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.34 E-value=2.7e+02 Score=31.46 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=63.1
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..+++.+.+-+....+.|.+||| |||++++....+-.++.-..+.|. .+. ............
T Consensus 103 fGg~~kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v~t~---gf~---g~~~~G~~~a~~ 176 (456)
T TIGR01283 103 FGGEKKLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPVDSE---GFY---GSKNLGNKLACD 176 (456)
T ss_pred eCCHHHHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEEECC---CCc---cchhHHHHHHHH
Confidence 6656666666777777778999887 899999862111011111111111 110 011122344556
Q ss_pred HHHHHHcCCCC--------CCCcEEEEEecCCCCcCCH--HHHhccccEEEeCCCCCCCcHHHHHHHH
Q 006411 524 QFLIEMEGFDS--------GSEQILLVGATNRPQELDE--AARRRLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 524 eLL~eLDGl~~--------~~~~VlVIaATNrPd~LDp--ALlRRFDr~I~IplPd~GySGADL~~Lc 581 (646)
.|+.++.+-.. ....|-||+-.|.+.++.. .++..|.-.+....|. +-+-.||+.+-
T Consensus 177 al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~eei~~~~ 243 (456)
T TIGR01283 177 ALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITG-DSRYAEVQTAH 243 (456)
T ss_pred HHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCC-CCcHHHHHhcc
Confidence 66666654321 1356888887776544321 2333666666555543 23456666554
No 330
>PRK10458 DNA cytosine methylase; Provisional
Probab=26.32 E-value=1.1e+02 Score=35.09 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
++..++..++...|.+++++++-.|..
T Consensus 207 Lf~~~~rii~~~kPk~fvlENV~gl~s 233 (467)
T PRK10458 207 LFFDVARIIDAKRPAIFVLENVKNLKS 233 (467)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcHhhhc
Confidence 567777788889999999999999875
No 331
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=26.31 E-value=1.9e+02 Score=32.57 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHHhhhcCC-eeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHH
Q 006411 454 IGEGEKLVRALFGVASCRQP-AVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRR 520 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aP-sIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~r 520 (646)
+|..++..+.+-+..+.+.| .+||| |||++++.....-....-..+.|. .+.... .+.......
T Consensus 99 ~Gg~~~L~~aI~~~~~~~~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~~pvi~v~t~---gf~g~~~~~G~~~a~~a 175 (443)
T TIGR01862 99 FGGEKKLKKLIHEAFTEFPLIKAISVYATCPTGLIGDDIEAVAKEVSKEIGKDVVAVNCP---GFAGVSQSKGHHIANIA 175 (443)
T ss_pred eCcHHHHHHHHHHHHHhCCccceEEEECCChHHHhccCHHHHHHHHHHhcCCCEEEEecC---CccCCccchHHHHHHHH
Confidence 67677777777777788888 77765 899999862100000001111111 111101 111112233
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
++.+|+..++.-......|-||+-.+.+.+++ .+.| .|.-.+....| .|-+-+||+.+-+
T Consensus 176 l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~-el~~lL~~~Gl~v~~~~~-~~~t~eei~~~~~ 238 (443)
T TIGR01862 176 VINDKVGTREKEITTEYDVNIIGEYNIGGDAW-VMRIYLEEMGIQVVATFT-GDGTYDEIRLMHK 238 (443)
T ss_pred HHHHHhCCCCcccCCCCeEEEEccCcCcccHH-HHHHHHHHcCCeEEEEEC-CCCCHHHHHhccc
Confidence 44444432222112245688888777666554 3333 66655544333 2345666666543
No 332
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=68 Score=34.32 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=11.8
Q ss_pred HHHhhhcCCeeeeehhhhHH
Q 006411 465 FGVASCRQPAVIFVDEIDSL 484 (646)
Q Consensus 465 F~~Ar~~aPsIIFIDEIDsL 484 (646)
....+.+.|-||++|||-..
T Consensus 211 mmaIrsm~PEViIvDEIGt~ 230 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTE 230 (308)
T ss_pred HHHHHhcCCcEEEEeccccH
Confidence 33445566777777776543
No 333
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=25.22 E-value=2e+02 Score=32.80 Aligned_cols=126 Identities=13% Similarity=0.132 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeee----------hhhhHHhhhccccc-ccchhhhhhhhhhccccCCCCCchhhHHH
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFV----------DEIDSLLSQMLPYM-HVHHIKLFCLKRFYFQRKSDGEHESSRRL 521 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFI----------DEIDsL~~k~~~~~-~~~~~~~~~~kr~~~~R~s~~~~e~s~ri 521 (646)
+|..+++.+.+-+..+.+ .|.+||| |||++++.....-. ...-..+.|. .|.+.....+.+.....+
T Consensus 108 fGg~~kL~~aI~~~~~~~~~p~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~~~vi~v~tp-gf~g~s~~~G~~~a~~~~ 186 (461)
T TIGR01860 108 FGGEKQLEKSIHEAFDEFPDIKRMIVYTTCPTALIGDDIKAVAKKVQKELPDVDIFTVECP-GFAGVSQSKGHHVLNIGW 186 (461)
T ss_pred eCcHHHHHHHHHHHHHhCCCCCEEEEEccCchhhhcCCHHHHHHHHHHhcCCCcEEEEeCC-CcCCcccchHHHHHHHHH
Confidence 665556666666655666 3766665 99999985211000 0111122221 111000000111112223
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCH--HHHhccccEEEeCCCCCCCcHHHHHHHH
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDE--AARRRLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDp--ALlRRFDr~I~IplPd~GySGADL~~Lc 581 (646)
+.+++..+..-......|-||+--|.+.++.. .++..|.-.+...++ .|-+-.||..+-
T Consensus 187 ~~~~v~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gi~v~~~~~-g~~t~~ei~~~~ 247 (461)
T TIGR01860 187 INEKVGTLEPEITSEYTINVIGDYNIQGDTQVLQKYWDKMGIQVIAHFT-GNGTYDDLRCMH 247 (461)
T ss_pred HHHHhcccCCCCCCCCcEEEECCCCCcccHHHHHHHHHHcCCcEEEEeC-CCCCHHHHHhcc
Confidence 33333333322222456889987777776642 223367666544443 244556666553
No 334
>PRK14700 recombination factor protein RarA; Provisional
Probab=25.09 E-value=1.1e+02 Score=33.21 Aligned_cols=45 Identities=31% Similarity=0.356 Sum_probs=31.9
Q ss_pred CcEEEEEec-CCC-CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 537 EQILLVGAT-NRP-QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 537 ~~VlVIaAT-NrP-d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
+.|++|||| -.| ..|.+||++|. +.+.+... +..||..+++.|..
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L----~~~di~~il~ral~ 53 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRL-FILRLKRL----SLVATQKLIEKALS 53 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhh-heeeecCC----CHHHHHHHHHHHHH
Confidence 457777766 334 57999999998 45555543 56888888888775
No 335
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=24.89 E-value=2.7e+02 Score=31.09 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=56.5
Q ss_pred CchH-HHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCC-chhhHHH
Q 006411 454 IGEG-EKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE-HESSRRL 521 (646)
Q Consensus 454 vGes-ek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~-~e~s~ri 521 (646)
.|+. ++..+.+-+.++.+.|.+||| |||++++.....-.+..-..++|. .+ .+. ......+
T Consensus 65 ~G~~~~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi~~v~~~~~~~~~~pVi~v~tp---gf----~g~~~~G~~~~ 137 (407)
T TIGR01279 65 SAAPAEELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDLEGLAERLSTNFGVPVLFAPAS---GL----DYTFTQGEDTV 137 (407)
T ss_pred cccchHHHHHHHHHHHhhcCCCEEEEECCchHHHHHhhHHHHHHHHHHhhCCCEEEeeCC---Cc----cccHHHHHHHH
Confidence 3443 466666777777788999997 999999862110000011111111 11 111 2234566
Q ss_pred HHHHHHHHcCCCCC-CCcEEEEEecCCCCcCCHHHHh---ccccEEEeCCCCC
Q 006411 522 KTQFLIEMEGFDSG-SEQILLVGATNRPQELDEAARR---RLTKRLYIPLPSS 570 (646)
Q Consensus 522 lneLL~eLDGl~~~-~~~VlVIaATNrPd~LDpALlR---RFDr~I~IplPd~ 570 (646)
+..++..+..-... ...|.++|..| |.++ ..+.| +|.-.+..-+|+.
T Consensus 138 ~~alv~~~~~~~~~~~~~vniiG~~~-~~d~-~elk~lL~~~Gi~v~~~lpd~ 188 (407)
T TIGR01279 138 LAALVPFCPEAPASEQRALVLVGSVN-DIVA-DQLRLELKQLGIPVVGFLPAS 188 (407)
T ss_pred HHHHHHhhccccCCCCCcEEEEeccC-hhhH-HHHHHHHHHcCCeEEEEeCCC
Confidence 66676665421111 24688888877 4433 33444 6665654344665
No 336
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=23.97 E-value=1.9e+02 Score=34.28 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=9.5
Q ss_pred CCeeeeehhhhHHhh
Q 006411 472 QPAVIFVDEIDSLLS 486 (646)
Q Consensus 472 aPsIIFIDEIDsL~~ 486 (646)
.-+..|||-+..+-.
T Consensus 354 PN~~FlFD~~e~l~~ 368 (782)
T PF07218_consen 354 PNSNFLFDTMENLRK 368 (782)
T ss_pred CCcchhhhhHHHHHH
Confidence 345677777776654
No 337
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=23.96 E-value=1.5e+02 Score=31.39 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHH
Q 006411 416 LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGE 458 (646)
Q Consensus 416 le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGese 458 (646)
-+++++.|.+++-+.|.... ...+.++|+|+...++.
T Consensus 54 d~~~~~~l~~~lg~~L~~~~------~~~~~~~l~G~g~nGKS 90 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNY------TEQKLFFLYGNGGNGKS 90 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCC------CceEEEEEECCCCCcHH
Confidence 44577888888877665421 23478999998733333
No 338
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=23.70 E-value=1.3e+02 Score=39.85 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCcCC-----HHHHhccccEEEeCCCC
Q 006411 537 EQILLVGATNRPQELD-----EAARRRLTKRLYIPLPS 569 (646)
Q Consensus 537 ~~VlVIaATNrPd~LD-----pALlRRFDr~I~IplPd 569 (646)
.+|+|.||+|-+.+.- ..++ |=.-.|++.-|.
T Consensus 1610 ~~i~l~Gacnp~td~gRv~~~eRf~-r~~v~vf~~ype 1646 (3164)
T COG5245 1610 CGIILYGACNPGTDEGRVKYYERFI-RKPVFVFCCYPE 1646 (3164)
T ss_pred cceEEEccCCCCCCcccCccHHHHh-cCceEEEecCcc
Confidence 5799999999988765 2233 334557788775
No 339
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=23.62 E-value=4.4e+02 Score=30.02 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeee----------hhhhHHhh
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFV----------DEIDSLLS 486 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFI----------DEIDsL~~ 486 (646)
+|..+++.+.+-+..+.+ .|.+||+ |||++++.
T Consensus 68 fGG~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~vv~ 111 (454)
T cd01973 68 FGGAKRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEGVIR 111 (454)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHHHHH
Confidence 565666666666666666 4777776 99999985
No 340
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=23.54 E-value=91 Score=31.51 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCCC--------CCcEEEEEecCCCCcC-CHHHHhccccEEEeCC------CCCCCcHHHHHHHHHH
Q 006411 519 RRLKTQFLIEMEGFDSG--------SEQILLVGATNRPQEL-DEAARRRLTKRLYIPL------PSSGYSGSDMKNLVKE 583 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~--------~~~VlVIaATNrPd~L-DpALlRRFDr~I~Ipl------Pd~GySGADL~~Lc~e 583 (646)
.++++-+-...|.+..+ ....++|||||..+-| |+.--|||= .|.++. |..-..-.++.+|-.+
T Consensus 113 ~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~-~v~v~~~i~~~~~~~~~~~~~~~qlwAe 191 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFW-PVEVSKRIDIKSIDIDLLEEDRDQLWAE 191 (198)
T ss_pred HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEE-EEEEcCcccccccchhhhHHHHHHHHHH
Confidence 34555444455544332 1246789999998843 445556762 233433 1112234456666655
Q ss_pred Hh
Q 006411 584 AS 585 (646)
Q Consensus 584 Aa 585 (646)
|.
T Consensus 192 A~ 193 (198)
T PF05272_consen 192 AV 193 (198)
T ss_pred HH
Confidence 54
No 341
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=23.53 E-value=2.9e+02 Score=32.11 Aligned_cols=122 Identities=14% Similarity=0.197 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeee----------hhhhHHhhhccccc-ccchhhhhhhhhhccccCCCCCchhhHHH
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFV----------DEIDSLLSQMLPYM-HVHHIKLFCLKRFYFQRKSDGEHESSRRL 521 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFI----------DEIDsL~~k~~~~~-~~~~~~~~~~kr~~~~R~s~~~~e~s~ri 521 (646)
+|..+++.+.|-+..+.+ .|..||| |+|++++..-..-. +..-..++|. .|....... .....
T Consensus 109 fGGe~kL~~~I~ea~~~~~~p~~I~V~tTC~t~lIGDDi~av~k~~~~~~~~~pVi~v~tp---GF~G~~~~g--g~~~a 183 (513)
T TIGR01861 109 FGAEKLLKQNIIEAFKAFPHIKRMTIYQTCATALIGDDIAAIAKEVMEEMPDVDIFVCNSP---GFAGPSQSG--GHHKI 183 (513)
T ss_pred eCcHHHHHHHHHHHHHhCCCCCeEEEEccCchhhccCCHHHHHHHHHHhcCCCcEEEEeCC---CccCccccc--hHHHH
Confidence 665555556666666666 4777764 99999986210000 0111111221 111111111 11234
Q ss_pred HHHHHHHHcCCC----CCCCcEEEEEecCCCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 522 KTQFLIEMEGFD----SGSEQILLVGATNRPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 522 lneLL~eLDGl~----~~~~~VlVIaATNrPd~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
+..++.++-+-. .....|=+|+--|.+.++. .+.| .|.-++.... +-|-+-.||+.+-+
T Consensus 184 ~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~-eik~lLe~~Gl~v~~~~-~gg~t~~ei~~~~~ 249 (513)
T TIGR01861 184 NIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQE-VMVDYFQRMGIQVLSTF-TGNGSYDDLRGMHR 249 (513)
T ss_pred HHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHH-HHHHHHHHCCCeEEEEe-CCCCCHHHHHhhcc
Confidence 445555443321 1124688999888888775 3444 6776664333 34567777777643
No 342
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=23.48 E-value=5.2e+02 Score=27.12 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.3
Q ss_pred hcCCeeeeehhhhHHhh
Q 006411 470 CRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 470 ~~aPsIIFIDEIDsL~~ 486 (646)
..++.+|+||+|+.|+.
T Consensus 133 ~~~~~~liIDdls~Ll~ 149 (249)
T PF09807_consen 133 SNGSVVLIIDDLSVLLS 149 (249)
T ss_pred CCCCeEEEEeCHHHHHH
Confidence 34678999999999985
No 343
>PRK04841 transcriptional regulator MalT; Provisional
Probab=23.29 E-value=3.4e+02 Score=32.60 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhh-hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC
Q 006411 458 EKLVRALFGVAS-CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS 536 (646)
Q Consensus 458 ek~Vr~lF~~Ar-~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~ 536 (646)
...+..++.... ...|.+|+|||++.+-. ......+..|+.. ..
T Consensus 106 ~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~-----------------------------~~~~~~l~~l~~~---~~--- 150 (903)
T PRK04841 106 SSLFAQLFIELADWHQPLYLVIDDYHLITN-----------------------------PEIHEAMRFFLRH---QP--- 150 (903)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcCcCCC-----------------------------hHHHHHHHHHHHh---CC---
Confidence 345556665443 36899999999997732 0123344555533 22
Q ss_pred CcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 537 EQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 537 ~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
.++.+|.+|...-.+.-+-++.-+..+.+...+-.|+..+...++..
T Consensus 151 ~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~ 197 (903)
T PRK04841 151 ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQ 197 (903)
T ss_pred CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHh
Confidence 23444446655323432223323445667766667777777777653
No 344
>PRK13949 shikimate kinase; Provisional
Probab=22.99 E-value=2.9e+02 Score=26.83 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=48.0
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
+.|+|.|||+.++....+.+-+... +.|+| .|.+.... +..+....++ ..+ .+.-+.+-.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~-----~~~id-~D~~i~~~----------~~~~~~~~~~--~~g-~~~fr~~e~~ 62 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG-----LSFID-LDFFIENR----------FHKTVGDIFA--ERG-EAVFRELERN 62 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-----CCeec-ccHHHHHH----------HCccHHHHHH--HhC-HHHHHHHHHH
Confidence 3589999996666555554444332 34555 46555310 0000000000 011 1233556666
Q ss_pred HHHHHcCCCCCCCcEEEEEecCC-C-CcCCHHHHhccccEEEeCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNR-P-QELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNr-P-d~LDpALlRRFDr~I~IplPd 569 (646)
+|.++.... + .||++-.- + ..-...++++.+..|++..|.
T Consensus 63 ~l~~l~~~~----~-~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~ 104 (169)
T PRK13949 63 MLHEVAEFE----D-VVISTGGGAPCFFDNMELMNASGTTVYLKVSP 104 (169)
T ss_pred HHHHHHhCC----C-EEEEcCCcccCCHHHHHHHHhCCeEEEEECCH
Confidence 777664432 2 33433221 1 111235666778888887764
No 345
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=22.65 E-value=1.7e+02 Score=30.18 Aligned_cols=31 Identities=10% Similarity=-0.062 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCH
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDp 553 (646)
..+...++..+-.- .+.++|.||...+..+.
T Consensus 141 ~ai~~aile~l~~~----~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 141 IAIAIAILEYLLEK----SGCFVIIATHFHELAEL 171 (235)
T ss_dssp HHHHHHHHHHHHHT----TT-EEEEEES-GGGGGH
T ss_pred HHHHHHHHHHHHHh----ccccEEEEeccchhHHH
Confidence 33444455544431 24578899999876554
No 346
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=22.47 E-value=98 Score=30.51 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=27.3
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehhhh
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEID 482 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDEID 482 (646)
..|++|+|||+.++.....++-..|....-+++|+.--|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 579999999966677777777767766778888886544
No 347
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=22.03 E-value=2e+02 Score=30.94 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=22.7
Q ss_pred cccccCCCCchHHHHHHHHHHHhhhcCCeeeee
Q 006411 446 GLLLFGPPIGEGEKLVRALFGVASCRQPAVIFV 478 (646)
Q Consensus 446 GVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFI 478 (646)
-++++|++...+...+..+...++...+.++|+
T Consensus 71 r~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~ 103 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELINNIAKAHGGYSVF 103 (274)
T ss_pred EEEEecCCCCChhHHHHHHHHHHHhcCCCEEEE
Confidence 488899996666677788777776544444444
No 348
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.97 E-value=2.6e+02 Score=31.06 Aligned_cols=121 Identities=18% Similarity=0.268 Sum_probs=62.5
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..++....+=+..+.+.|.+||| |||++++....+-.+..-..+.|. .+.. .........+.
T Consensus 68 fGg~~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~---gf~g---~~~~G~~~a~~ 141 (410)
T cd01968 68 FGGEKKLYKAILEIIERYHPKAVFVYSTCVVALIGDDIDAVCKTASEKFGIPVIPVHSP---GFVG---NKNLGNKLACE 141 (410)
T ss_pred eccHHHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEECC---Cccc---ChhHHHHHHHH
Confidence 5666666666666667778998886 899988862111011111111111 1111 11123345666
Q ss_pred HHHHHHcCCCC----CCCcEEEEEecCCCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 524 QFLIEMEGFDS----GSEQILLVGATNRPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 524 eLL~eLDGl~~----~~~~VlVIaATNrPd~LDpALlR---RFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
.++.++..... ....|-||+-.+.+.+++ .+.| .|.-.+..-.| .+-+-.||+.+-+
T Consensus 142 ~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~-el~~lL~~~Gl~v~~~~~-~~~s~eei~~~~~ 205 (410)
T cd01968 142 ALLDHVIGTEEPEPLTPYDINLIGEFNVAGELW-GVKPLLEKLGIRVLASIT-GDSRVDEIRRAHR 205 (410)
T ss_pred HHHHHhcCCCCcccCCCCcEEEECCCCCcccHH-HHHHHHHHcCCeEEEEeC-CCCCHHHHHhhhh
Confidence 77777654321 135688888777665543 3333 56544432222 1335566666543
No 349
>PRK06921 hypothetical protein; Provisional
Probab=21.80 E-value=1.2e+02 Score=32.04 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=28.1
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhc-CCeeeeehhhh
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCR-QPAVIFVDEID 482 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~-aPsIIFIDEID 482 (646)
..+++|+|||+.+...++.++-..+... ..+++|+.-.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 4789999999666777777777766554 67777775433
No 350
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=21.78 E-value=1.5e+02 Score=35.01 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=34.0
Q ss_pred hhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhcc--CccccccCC-CCCccccccCCCCchHHHHHHHH
Q 006411 391 PRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLL--RPDIFKGCR-SPGKGLLLFGPPIGEGEKLVRAL 464 (646)
Q Consensus 391 p~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~--~pelf~~~~-~PprGVLLyGPPvGesek~Vr~l 464 (646)
|.+.+.+++.|. | .|.|-+++|+.|.= .+ +. +..+-.+.. +---.|||.|-|+......++-+
T Consensus 319 ~d~Ye~is~sIA---P-----SIfG~~DiKkAiaC--lL-FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 319 PDVYERISKSIA---P-----SIFGHEDIKKAIAC--LL-FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred ccHHHHHhhccC---c-----hhcCchhHHHHHHH--Hh-hcCccccCCCcceeccceeEEEecCCchhHHHHHHHH
Confidence 455666666553 2 57888999987732 22 21 111111211 11235999999955555555544
No 351
>COG1106 Predicted ATPases [General function prediction only]
Probab=21.65 E-value=1.3e+02 Score=33.64 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=38.8
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCC
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELD 552 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LD 552 (646)
-.++||||||..+- ...+..-+.+..|+... .++.+++||....-||
T Consensus 271 ~k~l~iDEie~~lH-------------------------------p~lm~~~l~~~~~~~~~--~niq~~~TTH~~e~id 317 (371)
T COG1106 271 DKVLLIDEIENGLH-------------------------------PSLMILILETLEDKVKN--NNIQVFLTTHSTEFID 317 (371)
T ss_pred CceEEeehhhhccC-------------------------------HHHHHHHHHHHHhhccc--ceEEEEeecccHHHHH
Confidence 37999999997653 12233333344455543 3799999999999999
Q ss_pred HHHHhcccc
Q 006411 553 EAARRRLTK 561 (646)
Q Consensus 553 pALlRRFDr 561 (646)
-.+.+|-+.
T Consensus 318 ~~l~~~~e~ 326 (371)
T COG1106 318 LLLERRDEK 326 (371)
T ss_pred HHHHhhhhh
Confidence 999885433
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=21.56 E-value=2.8e+02 Score=30.11 Aligned_cols=64 Identities=13% Similarity=-0.039 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhhccC-ccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 416 LEHAKKCVMEMVIWPLLR-PDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 416 le~~K~~L~E~V~lPL~~-pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
.+.+++.|.+.+..-+.. ...+.....++.-++|.||++.+....+..+-...+.....|+++|
T Consensus 85 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 85 PEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred HHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 445566666655553431 1111111234577889999966677777777666666666788775
No 353
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=21.35 E-value=1.4e+02 Score=34.28 Aligned_cols=64 Identities=9% Similarity=0.163 Sum_probs=44.7
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCcc-ccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh-hhHH
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKG-LLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE-IDSL 484 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprG-VLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE-IDsL 484 (646)
..+++++|-.++..+.|++.+.. +.| ||+.||++.++...+..+..........|+-|++ ++..
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~--------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR--------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc--------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 46788998888888888776644 456 6899999888888888777665444445666643 4433
No 354
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.31 E-value=1.8e+02 Score=37.75 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=27.3
Q ss_pred CCcEEEEEecCCCC--cCCHHHHhccccEEEeCCCCC
Q 006411 536 SEQILLVGATNRPQ--ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 536 ~~~VlVIaATNrPd--~LDpALlRRFDr~I~IplPd~ 570 (646)
.-+|.+|.||.||. .|...++.-|..+|-|..-+.
T Consensus 1173 AaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~ 1209 (1355)
T PRK10263 1173 AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 1209 (1355)
T ss_pred hcCeEEEEEecCcccccchHHHHhhccceEEEEcCCH
Confidence 45799999999997 576666667888888877754
No 355
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=21.16 E-value=2.3e+02 Score=32.19 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeee----------hhhhHHhhhcccccc-cchhhhhhhhhhccccC--CCCCchhhH
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFV----------DEIDSLLSQMLPYMH-VHHIKLFCLKRFYFQRK--SDGEHESSR 519 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFI----------DEIDsL~~k~~~~~~-~~~~~~~~~kr~~~~R~--s~~~~e~s~ 519 (646)
+|..+++.+.+-+.++.+ .|.+||| |||++++.....-.. ..-..++|+ .+... ..+.+....
T Consensus 106 fGge~kL~~aI~e~~~~~p~p~~I~V~stC~~~lIGDDi~~v~~e~~~~~~~~pvv~v~t~---gf~g~s~~~G~~~a~~ 182 (457)
T TIGR01284 106 FGGEKKLKRCILEAFREFPEIKRMYTYATCTTALIGDDIDAIAREVMEEIPDVDVFAINAP---GFAGPSQSKGHHVANI 182 (457)
T ss_pred ecHHHHHHHHHHHHHHhCCCCceEEEECCChHHhhccCHHHHHHHHHHhcCCCeEEEeeCC---CcCCcccchHHHHHHH
Confidence 565555555566666666 4766665 899999862111000 011111111 11110 111111122
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCH--HHHhccccEEEeCCCCCCCcHHHHHHHH
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE--AARRRLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDp--ALlRRFDr~I~IplPd~GySGADL~~Lc 581 (646)
.++.+|+..++.-......|-||+.-|.+.++.. .+++.|.-++....|. +-+-+||+.+-
T Consensus 183 al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g-~~s~~ei~~~~ 245 (457)
T TIGR01284 183 TWINDKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTG-NGCYDELRWMH 245 (457)
T ss_pred HHHHHHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECC-CCCHHHHHhcc
Confidence 3333333322221222356888887777665542 2333666665434432 33556666553
No 356
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=21.07 E-value=2.6e+02 Score=34.81 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=65.2
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeee----------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFV----------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFI----------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+|..++..+.+-+.++.+.|.+||| |||++++.....-....-..+.|. .|.+. ...+.+.....++.
T Consensus 94 fGG~~kL~~aI~~~~~~~~P~~I~V~tTC~~elIGDDi~~v~~~~~~~~~~pvi~v~tp-GF~gs-~~~G~~~a~~al~~ 171 (917)
T PRK14477 94 FGGEKKLYRAILELAERYQPKAVFVYATCVTALTGDDVEAVCKAAAEKVGIPVIPVNTP-GFIGD-KNIGNRLAGEALLK 171 (917)
T ss_pred eCcHHHHHHHHHHHHHhcCCCEEEEECCchHHHhccCHHHHHHHHHHhhCCcEEEEECC-CccCc-hhhHHHHHHHHHHH
Confidence 6766677777777778889999987 999999863111111111111121 11110 01122223345555
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh---ccccEEEeCCCCCCCcHHHHHHH
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQELDEAARR---RLTKRLYIPLPSSGYSGSDMKNL 580 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR---RFDr~I~IplPd~GySGADL~~L 580 (646)
+|+..++-.......|-||+--|.+.++. .+.+ +|.-.+..-.+ .+-+-.||+.+
T Consensus 172 ~l~~~~~p~~~~~~~VNliG~~~~~gd~~-elk~lL~~~Gi~v~~~~~-g~~t~eei~~~ 229 (917)
T PRK14477 172 HVIGTAEPEVTTPYDINLIGEYNIAGDLW-GMLPLFDRLGIRVLSCIS-GDAKFEELRYA 229 (917)
T ss_pred HHHhhcCCCCCCCCcEEEECCCCCcchHH-HHHHHHHHcCCeEEEEcC-CCCCHHHHHhc
Confidence 55544443333346789999888776654 3443 66655532222 24466777665
No 357
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=20.60 E-value=1.4e+02 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
...++.+....+ ..+.+|+||-|.+++.
T Consensus 94 ~~~i~~~~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 94 SEAIRKAEKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHHHHHHHHH-hcccEEEEeCcHHHhH
Confidence 344555544444 6899999999999975
No 358
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=20.41 E-value=1.8e+02 Score=35.31 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=48.8
Q ss_pred hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCC
Q 006411 470 CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549 (646)
Q Consensus 470 ~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd 549 (646)
...|.+++|||.-..+. +......+.+++..+.. .+..+|++|..|+
T Consensus 640 ~g~p~il~iDE~w~~L~----------------------------~~~~~~~i~~~lk~~RK-----~~~~~i~~TQ~~~ 686 (800)
T PRK13898 640 DGTPSMIVLDEAWALID----------------------------NPVFAPKIKDWLKVLRK-----LNTFVIFATQSVE 686 (800)
T ss_pred cCCCcEEEEeCChhhCC----------------------------CHHHHHHHHHHHHHHHH-----cCCEEEEEeCCHH
Confidence 35799999999887764 11122334445544432 2446778888876
Q ss_pred cCC-----HHHHhccccEEEeCCCCC--------CCcHHHHHHH
Q 006411 550 ELD-----EAARRRLTKRLYIPLPSS--------GYSGSDMKNL 580 (646)
Q Consensus 550 ~LD-----pALlRRFDr~I~IplPd~--------GySGADL~~L 580 (646)
.+- .+++.-.+-+|++|.|.. |.|..++..|
T Consensus 687 d~~~s~~~~~i~~~~~t~I~lpn~~a~~~y~~~~gLt~~e~~~i 730 (800)
T PRK13898 687 DASKSAISDTLVQQTATQIFLPNLKATDIYRSVFMLSEREYILI 730 (800)
T ss_pred HHHhChhHHHHHHhCCeEEEcCChhhHHHHHHHcCCCHHHHHHH
Confidence 643 456667888899998874 4555555433
No 359
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=20.28 E-value=3.5e+02 Score=32.54 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=44.5
Q ss_pred cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCc
Q 006411 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQE 550 (646)
Q Consensus 471 ~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~ 550 (646)
..|.+++|||+-.++. . ........+.+++...... ++.++.+|-.|.+
T Consensus 636 ~~~~~~viDEaw~ll~---------------------~-----~~~~~~~~i~~~~r~~RK~-----g~~~~~~TQ~~~D 684 (797)
T TIGR02746 636 KRRKICIIDEAWSLLD---------------------G-----ANPQAADFIETGYRRARKY-----GGAFITITQGIED 684 (797)
T ss_pred CCceEEEEecHHHHhh---------------------c-----ccHHHHHHHHHHHHHHhhc-----CceEEEEEecHHH
Confidence 4699999999998874 1 1122344555555555433 4577788888888
Q ss_pred CCH-----HHHhccccEEEeCCC
Q 006411 551 LDE-----AARRRLTKRLYIPLP 568 (646)
Q Consensus 551 LDp-----ALlRRFDr~I~IplP 568 (646)
+.. +++.-.+-+|.++.+
T Consensus 685 ~~~~~~~~~il~n~~~~i~L~~~ 707 (797)
T TIGR02746 685 FYSSPEARAAYANSDWKIILRQS 707 (797)
T ss_pred hccCHHHHHHHhcccceeeecCC
Confidence 842 455567778888875
No 360
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=20.25 E-value=3e+02 Score=32.68 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=15.4
Q ss_pred HHHHHHhhhcCCeeeeehhhhH
Q 006411 462 RALFGVASCRQPAVIFVDEIDS 483 (646)
Q Consensus 462 r~lF~~Ar~~aPsIIFIDEIDs 483 (646)
|-.+..|--..|.|+++||.-+
T Consensus 623 RiaLARall~~p~iliLDEptS 644 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATS 644 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccc
Confidence 3345555566899999999553
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.13 E-value=3.3e+02 Score=31.32 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 416 LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 416 le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
.+.+++.|.+.+...+..+..+ ...++-|+|.||++.+....+..+-..+......|.+|+
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567777777665544433222 223467999999966666666666555555556677665
No 362
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.03 E-value=2.5e+02 Score=32.05 Aligned_cols=62 Identities=15% Similarity=0.012 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc--CCeeeeeh
Q 006411 418 HAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR--QPAVIFVD 479 (646)
Q Consensus 418 ~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~--aPsIIFID 479 (646)
.+.+.|.+.+...+...........+|.-|+|+|||+.+....+..+-..++.. .+.+|-.|
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 444555555444343221111111357889999999555555555555545443 34444444
Done!