Query 006411
Match_columns 646
No_of_seqs 328 out of 1903
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 00:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 6.7E-46 2.3E-50 399.6 12.5 263 313-638 70-405 (405)
2 4b4t_I 26S protease regulatory 100.0 9E-45 3.1E-49 393.2 6.4 257 313-632 104-433 (437)
3 4b4t_L 26S protease subunit RP 100.0 3.3E-43 1.1E-47 382.1 11.6 260 314-639 104-436 (437)
4 4b4t_H 26S protease regulatory 100.0 9.7E-43 3.3E-47 380.1 14.7 246 330-638 153-467 (467)
5 3cf2_A TER ATPase, transitiona 100.0 1.2E-43 4.1E-48 409.4 7.1 240 378-643 448-764 (806)
6 4b4t_K 26S protease regulatory 100.0 1.9E-42 6.5E-47 375.4 12.3 256 314-632 95-425 (428)
7 4b4t_M 26S protease regulatory 100.0 9.3E-42 3.2E-46 370.6 15.2 235 331-628 126-428 (434)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.9E-38 2.7E-42 324.8 24.2 222 401-644 2-321 (322)
9 3eie_A Vacuolar protein sortin 100.0 4.6E-36 1.6E-40 309.7 20.6 223 399-643 6-319 (322)
10 2qp9_X Vacuolar protein sortin 100.0 1.4E-35 4.9E-40 311.7 21.0 228 394-643 34-352 (355)
11 3d8b_A Fidgetin-like protein 1 100.0 1.4E-35 4.7E-40 311.4 19.4 239 382-644 55-356 (357)
12 2zan_A Vacuolar protein sortin 100.0 9.7E-36 3.3E-40 322.1 16.4 231 391-643 114-442 (444)
13 3cf2_A TER ATPase, transitiona 100.0 2.2E-35 7.5E-40 340.8 11.8 217 403-642 196-490 (806)
14 3cf0_A Transitional endoplasmi 100.0 7.1E-34 2.4E-38 291.2 16.8 222 399-642 3-301 (301)
15 3b9p_A CG5977-PA, isoform A; A 100.0 5.9E-32 2E-36 272.7 18.4 229 392-644 2-294 (297)
16 2x8a_A Nuclear valosin-contain 100.0 3.4E-32 1.2E-36 277.2 13.9 202 404-631 3-273 (274)
17 3vfd_A Spastin; ATPase, microt 100.0 9.4E-31 3.2E-35 276.6 17.1 237 386-646 90-389 (389)
18 1ypw_A Transitional endoplasmi 100.0 3.2E-30 1.1E-34 298.1 -0.9 221 400-642 466-763 (806)
19 3h4m_A Proteasome-activating n 99.9 7.7E-26 2.6E-30 226.4 16.6 207 402-644 8-282 (285)
20 3hu3_A Transitional endoplasmi 99.9 1.4E-26 5E-31 254.5 12.3 208 406-636 199-484 (489)
21 2ce7_A Cell division protein F 99.9 4.9E-25 1.7E-29 242.0 15.2 183 405-624 10-258 (476)
22 1lv7_A FTSH; alpha/beta domain 99.9 4.3E-24 1.5E-28 211.8 18.3 185 403-624 4-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.2E-24 4.2E-29 213.9 9.5 183 406-625 1-252 (262)
24 2dhr_A FTSH; AAA+ protein, hex 99.9 2.5E-23 8.6E-28 229.6 13.2 185 404-625 24-274 (499)
25 1ixz_A ATP-dependent metallopr 99.9 1.1E-22 3.8E-27 201.3 16.4 184 400-620 5-254 (254)
26 2r62_A Cell division protease 99.9 2.9E-24 1E-28 213.5 -0.5 192 402-629 2-260 (268)
27 1iy2_A ATP-dependent metallopr 99.9 4.5E-21 1.5E-25 193.1 19.1 182 402-620 31-278 (278)
28 1ypw_A Transitional endoplasmi 99.8 2.9E-20 1E-24 215.2 14.0 199 404-625 197-462 (806)
29 3t15_A Ribulose bisphosphate c 99.6 9.5E-17 3.3E-21 164.3 6.2 104 442-566 34-185 (293)
30 2c9o_A RUVB-like 1; hexameric 99.6 3.4E-17 1.2E-21 177.2 -1.4 147 405-583 31-262 (456)
31 3syl_A Protein CBBX; photosynt 99.4 1.4E-13 5E-18 138.7 6.2 175 411-618 31-290 (309)
32 1g41_A Heat shock protein HSLU 99.4 8.1E-14 2.8E-18 152.1 2.6 129 411-571 15-181 (444)
33 1ofh_A ATP-dependent HSL prote 99.3 1.2E-11 3.9E-16 123.8 10.9 139 411-570 15-204 (310)
34 1d2n_A N-ethylmaleimide-sensit 99.2 2.3E-11 7.8E-16 121.5 10.6 120 442-584 62-226 (272)
35 3uk6_A RUVB-like 2; hexameric 99.2 3.3E-11 1.1E-15 124.4 11.7 56 405-467 38-93 (368)
36 3m6a_A ATP-dependent protease 99.2 2.8E-12 9.6E-17 142.4 2.5 127 407-570 77-255 (543)
37 3pfi_A Holliday junction ATP-d 99.2 3.2E-10 1.1E-14 116.1 16.6 128 403-570 21-186 (338)
38 3cmw_A Protein RECA, recombina 99.0 9.5E-11 3.3E-15 144.5 4.3 125 404-548 1013-1218(1706)
39 1hqc_A RUVB; extended AAA-ATPa 99.0 4.2E-09 1.4E-13 106.6 13.7 197 404-642 5-261 (324)
40 3hws_A ATP-dependent CLP prote 98.9 2.6E-09 8.8E-14 111.5 11.3 100 412-532 16-157 (363)
41 2chg_A Replication factor C sm 98.9 1.8E-08 6.2E-13 94.0 15.8 118 404-570 10-163 (226)
42 1r6b_X CLPA protein; AAA+, N-t 98.9 1.1E-08 3.8E-13 116.7 16.1 192 408-641 183-456 (758)
43 2p65_A Hypothetical protein PF 98.9 2.5E-09 8.7E-14 97.9 8.3 121 407-569 18-187 (187)
44 1jbk_A CLPB protein; beta barr 98.9 2.9E-09 1E-13 97.1 8.3 121 406-569 17-186 (195)
45 1njg_A DNA polymerase III subu 98.9 2.7E-08 9.2E-13 93.5 14.7 127 404-582 16-195 (250)
46 1g8p_A Magnesium-chelatase 38 98.9 4.2E-08 1.5E-12 100.0 16.3 33 538-570 187-220 (350)
47 3bos_A Putative DNA replicatio 98.8 8.6E-08 2.9E-12 91.5 15.0 122 405-570 22-176 (242)
48 2v1u_A Cell division control p 98.8 5.9E-08 2E-12 99.3 14.4 127 407-570 15-203 (387)
49 3u61_B DNA polymerase accessor 98.8 2.5E-08 8.6E-13 101.6 10.7 120 403-569 18-166 (324)
50 3pvs_A Replication-associated 98.7 5.3E-08 1.8E-12 106.0 12.4 125 405-584 20-177 (447)
51 1um8_A ATP-dependent CLP prote 98.7 3.4E-08 1.2E-12 103.4 9.6 76 411-486 21-151 (376)
52 4fcw_A Chaperone protein CLPB; 98.6 1.3E-07 4.6E-12 94.9 11.5 136 411-586 17-230 (311)
53 2r44_A Uncharacterized protein 98.6 6E-07 2E-11 91.8 14.6 114 410-570 26-187 (331)
54 2chq_A Replication factor C sm 98.6 2.7E-07 9.4E-12 92.2 11.9 119 403-570 9-163 (319)
55 1sxj_A Activator 1 95 kDa subu 98.6 1.3E-07 4.3E-12 104.1 10.2 133 403-570 31-211 (516)
56 1sxj_D Activator 1 41 kDa subu 98.6 2.3E-07 7.8E-12 94.6 11.2 171 403-624 29-265 (353)
57 1iqp_A RFCS; clamp loader, ext 98.6 6.6E-07 2.3E-11 89.8 14.4 119 403-570 17-171 (327)
58 2qby_B CDC6 homolog 3, cell di 98.6 7.2E-07 2.5E-11 91.9 14.7 117 410-570 19-199 (384)
59 3vlf_B 26S protease regulatory 98.5 7.4E-08 2.5E-12 82.8 5.7 56 569-638 32-88 (88)
60 1qvr_A CLPB protein; coiled co 98.5 8.8E-08 3E-12 111.4 8.1 121 407-570 166-334 (854)
61 2qby_A CDC6 homolog 1, cell di 98.5 1.3E-06 4.5E-11 89.0 15.5 126 406-570 15-199 (386)
62 2z4s_A Chromosomal replication 98.5 5.9E-07 2E-11 97.2 13.4 124 404-570 98-265 (440)
63 3pxi_A Negative regulator of g 98.5 6E-07 2E-11 102.9 13.5 136 411-586 491-676 (758)
64 3aji_B S6C, proteasome (prosom 98.5 6E-08 2E-12 81.7 3.4 52 569-635 32-83 (83)
65 1r6b_X CLPA protein; AAA+, N-t 98.5 7.6E-07 2.6E-11 101.7 13.5 132 412-583 459-664 (758)
66 1jr3_A DNA polymerase III subu 98.5 1.9E-06 6.4E-11 88.4 14.8 119 404-570 9-180 (373)
67 1sxj_B Activator 1 37 kDa subu 98.5 1.5E-06 5.1E-11 87.0 13.7 118 404-570 14-168 (323)
68 1in4_A RUVB, holliday junction 98.4 1.3E-05 4.6E-10 83.0 20.6 195 406-642 20-273 (334)
69 3pxi_A Negative regulator of g 98.4 2.5E-07 8.4E-12 106.0 8.3 110 406-570 175-327 (758)
70 3pxg_A Negative regulator of g 98.4 4.3E-07 1.5E-11 98.9 9.1 111 405-570 174-327 (468)
71 1fnn_A CDC6P, cell division co 98.4 4.8E-06 1.6E-10 85.6 14.6 156 407-570 13-195 (389)
72 2dzn_B 26S protease regulatory 98.2 6.7E-07 2.3E-11 75.5 4.4 53 569-635 29-82 (82)
73 1sxj_C Activator 1 40 kDa subu 98.2 2.2E-05 7.4E-10 81.0 16.3 117 404-569 18-170 (340)
74 1l8q_A Chromosomal replication 98.2 9.3E-06 3.2E-10 82.9 12.4 123 405-570 5-168 (324)
75 3nbx_X ATPase RAVA; AAA+ ATPas 98.2 1E-05 3.6E-10 89.5 13.5 113 411-570 22-184 (500)
76 3te6_A Regulatory protein SIR3 98.2 4.7E-06 1.6E-10 87.3 9.9 92 457-587 115-213 (318)
77 1sxj_E Activator 1 40 kDa subu 98.1 7.9E-06 2.7E-10 83.7 10.4 46 521-570 150-195 (354)
78 3k1j_A LON protease, ATP-depen 98.1 8.2E-06 2.8E-10 91.5 10.8 50 403-466 33-82 (604)
79 2bjv_A PSP operon transcriptio 98.1 1.3E-05 4.4E-10 79.4 10.7 135 407-585 2-194 (265)
80 3f9v_A Minichromosome maintena 98.0 1.2E-06 4.2E-11 98.5 2.2 140 411-585 295-515 (595)
81 1qvr_A CLPB protein; coiled co 97.9 5.1E-05 1.8E-09 88.3 13.3 139 410-588 557-773 (854)
82 2krk_A 26S protease regulatory 97.9 5.7E-06 1.9E-10 71.0 3.8 43 569-625 42-84 (86)
83 3kw6_A 26S protease regulatory 97.9 8.4E-06 2.9E-10 67.8 4.1 41 570-624 35-75 (78)
84 1a5t_A Delta prime, HOLB; zinc 97.8 0.00023 7.8E-09 73.7 13.6 47 520-570 123-169 (334)
85 3n70_A Transport activator; si 97.8 3.6E-05 1.2E-09 70.1 6.7 110 412-567 2-143 (145)
86 1ojl_A Transcriptional regulat 97.7 0.00014 4.8E-09 74.7 11.4 47 411-467 2-48 (304)
87 4akg_A Glutathione S-transfera 97.7 9.4E-05 3.2E-09 95.5 11.4 72 473-570 1337-1420(2695)
88 1w5s_A Origin recognition comp 97.6 0.00064 2.2E-08 70.4 14.1 51 520-570 159-217 (412)
89 3co5_A Putative two-component 97.6 4.2E-05 1.4E-09 69.6 4.4 108 412-567 5-141 (143)
90 2gno_A DNA polymerase III, gam 97.5 0.00036 1.2E-08 72.2 11.2 45 520-570 97-141 (305)
91 1g41_A Heat shock protein HSLU 97.2 0.0027 9.3E-08 69.4 13.3 94 454-570 234-338 (444)
92 3ec2_A DNA replication protein 96.7 0.0057 2E-07 56.8 9.4 57 404-469 3-63 (180)
93 2c9o_A RUVB-like 1; hexameric 95.8 0.025 8.4E-07 61.1 9.3 112 473-622 296-437 (456)
94 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0022 7.4E-08 67.8 0.9 75 458-557 170-244 (331)
95 3cmu_A Protein RECA, recombina 95.6 0.0083 2.8E-07 76.0 5.2 70 456-544 1489-1560(2050)
96 3f8t_A Predicted ATPase involv 95.6 0.11 3.7E-06 57.8 13.4 65 520-585 315-407 (506)
97 2kjq_A DNAA-related protein; s 95.4 0.018 6.1E-07 53.1 5.5 41 444-484 36-95 (149)
98 2r2a_A Uncharacterized protein 95.0 0.028 9.6E-07 54.7 5.9 71 471-571 86-156 (199)
99 1svm_A Large T antigen; AAA+ f 94.8 0.0049 1.7E-07 65.9 -0.0 122 416-567 131-284 (377)
100 4akg_A Glutathione S-transfera 92.2 1 3.5E-05 59.0 14.3 33 537-570 746-782 (2695)
101 1ny5_A Transcriptional regulat 89.4 2.7 9.2E-05 44.3 12.3 49 410-468 136-184 (387)
102 1tue_A Replication protein E1; 88.3 0.3 1E-05 48.7 3.7 24 444-467 58-81 (212)
103 1jr3_D DNA polymerase III, del 86.6 1.8 6.3E-05 44.0 8.6 116 443-570 17-144 (343)
104 1u0j_A DNA replication protein 85.8 2.1 7.2E-05 43.8 8.5 45 537-582 189-248 (267)
105 3dzd_A Transcriptional regulat 85.4 8.1 0.00028 40.5 13.0 48 538-587 263-318 (368)
106 2w58_A DNAI, primosome compone 82.1 1.8 6.3E-05 40.2 5.8 65 406-478 20-88 (202)
107 3vkg_A Dynein heavy chain, cyt 81.9 1.3 4.6E-05 58.7 6.2 33 537-570 1421-1458(3245)
108 3cmu_A Protein RECA, recombina 79.9 0.36 1.2E-05 61.6 -0.0 68 461-545 795-866 (2050)
109 3ubt_Y Modification methylase 66.8 7.1 0.00024 39.5 5.8 42 445-486 62-116 (331)
110 4ag6_A VIRB4 ATPase, type IV s 65.6 15 0.0005 38.3 8.1 85 462-582 250-344 (392)
111 3cmw_A Protein RECA, recombina 64.1 3 0.0001 52.6 2.9 72 454-547 1491-1567(1706)
112 2qen_A Walker-type ATPase; unk 61.2 27 0.00092 34.4 8.8 28 459-486 115-142 (350)
113 2fna_A Conserved hypothetical 57.7 22 0.00076 35.1 7.4 26 461-486 124-151 (357)
114 2qgz_A Helicase loader, putati 55.0 13 0.00046 37.7 5.4 63 407-478 120-187 (308)
115 2ehv_A Hypothetical protein PH 52.9 21 0.00072 33.6 6.1 82 457-567 120-207 (251)
116 3hu3_A Transitional endoplasmi 52.4 4.2 0.00014 44.6 1.2 38 378-419 448-485 (489)
117 1xp8_A RECA protein, recombina 51.0 15 0.00052 38.7 5.1 29 458-486 138-166 (366)
118 4ft4_B DNA (cytosine-5)-methyl 45.4 27 0.00091 40.1 6.4 76 407-486 345-438 (784)
119 2zr9_A Protein RECA, recombina 44.9 13 0.00043 38.9 3.4 29 458-486 125-153 (349)
120 2iut_A DNA translocase FTSK; n 39.5 33 0.0011 38.7 5.8 34 536-569 376-411 (574)
121 3hr8_A Protein RECA; alpha and 39.3 28 0.00095 36.7 4.9 28 459-486 126-153 (356)
122 2w0m_A SSO2452; RECA, SSPF, un 39.1 75 0.0026 29.2 7.4 30 457-486 106-137 (235)
123 2c7p_A Modification methylase 36.0 33 0.0011 35.5 4.8 42 445-486 72-126 (327)
124 3h43_A Proteasome-activating n 35.6 4.3 0.00015 34.6 -1.6 52 313-364 19-77 (85)
125 2ius_A DNA translocase FTSK; n 34.7 57 0.0019 36.2 6.7 33 537-569 331-365 (512)
126 4a74_A DNA repair and recombin 34.6 30 0.001 32.1 3.9 26 461-486 109-139 (231)
127 2wg5_A General control protein 34.2 5.8 0.0002 35.2 -1.1 55 313-367 38-99 (109)
128 1g55_A DNA cytosine methyltran 34.2 47 0.0016 34.3 5.7 41 446-486 70-125 (343)
129 2cvh_A DNA repair and recombin 31.1 20 0.0007 33.1 2.1 26 460-486 94-119 (220)
130 4h0n_A DNMT2; SAH binding, tra 29.5 47 0.0016 34.5 4.7 27 460-486 98-125 (333)
131 1n0w_A DNA repair protein RAD5 28.1 37 0.0013 31.8 3.3 28 459-486 106-133 (243)
132 1ye8_A Protein THEP1, hypothet 27.6 2E+02 0.0069 26.5 8.4 16 469-484 96-111 (178)
133 3vkg_A Dynein heavy chain, cyt 26.3 2E+02 0.0069 38.9 10.6 33 537-570 706-742 (3245)
134 2qen_A Walker-type ATPase; unk 25.6 93 0.0032 30.5 5.9 56 405-479 6-61 (350)
135 2zts_A Putative uncharacterize 25.2 1.5E+02 0.0051 27.6 7.0 27 460-486 123-149 (251)
136 3g7u_A Cytosine-specific methy 24.4 1E+02 0.0035 32.4 6.3 42 445-486 72-125 (376)
137 4dkj_A Cytosine-specific methy 22.6 94 0.0032 33.3 5.6 41 446-486 127-191 (403)
138 3qv2_A 5-cytosine DNA methyltr 20.7 1.5E+02 0.0051 30.7 6.4 28 459-486 106-136 (327)
139 2px0_A Flagellar biosynthesis 20.2 1.5E+02 0.0053 29.8 6.4 62 417-479 79-141 (296)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-46 Score=399.56 Aligned_cols=263 Identities=30% Similarity=0.478 Sum_probs=211.8
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHH
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEK 385 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 385 (646)
.++|.++..++.+..++ +++++.+.+.++.. +.++.. .++..++..+++|++....
T Consensus 70 ~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~----------------- 132 (405)
T 4b4t_J 70 SYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADP----------------- 132 (405)
T ss_dssp EEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSC-----------------
T ss_pred ceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCc-----------------
Confidence 35677777777665443 35677777777644 555544 6777777777777655321
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------- 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------- 453 (646)
.+...++.+.|+|+|+||||++++|++|+|.|.+|+++|++|..++ .||+||||||||
T Consensus 133 ----------~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 133 ----------LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp ----------CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred ----------hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHH
Confidence 1134456788999999999999999999999999999999999876 788999999999
Q ss_pred --------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--
Q 006411 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-- 511 (646)
Q Consensus 454 --------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-- 511 (646)
+|+++++|+.+|..|+.++||||||||||+|++ +|..
T Consensus 203 A~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~---------------------~R~~~~ 261 (405)
T 4b4t_J 203 AHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS---------------------TRVEGS 261 (405)
T ss_dssp HHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT---------------------SCSCSS
T ss_pred HHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhcc---------------------CCCCCC
Confidence 899999999999999999999999999999998 4432
Q ss_pred CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------
Q 006411 512 DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 512 ~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------- 570 (646)
.+.+....+++++||++|||+.. ..+|+||||||+|+.||||++| |||++|+||+||.
T Consensus 262 ~~~~~~~~~~l~~lL~~lDg~~~-~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d 340 (405)
T 4b4t_J 262 GGGDSEVQRTMLELLNQLDGFET-SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG 340 (405)
T ss_dssp SGGGGHHHHHHHHHHHHHHTTTC-CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS
T ss_pred CCCcHHHHHHHHHHHHhhhccCC-CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc
Confidence 22334567899999999999987 6789999999999999999999 9999999999985
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWN 638 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~ 638 (646)
|||||||+++|++|++.|+++ ....|+++||+.|++++.|......+..++.|+
T Consensus 341 vdl~~lA~~t~G~SGADi~~l~~eA~~~Air~--------------~~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 341 INLRKVAEKMNGCSGADVKGVCTEAGMYALRE--------------RRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--------------TCSBCCHHHHHHHHHHHHHHHTCC---------
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--------------CCCCcCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 999999999999999999976 235699999999999998766555566666553
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-45 Score=393.18 Aligned_cols=257 Identities=29% Similarity=0.454 Sum_probs=218.8
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHH
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEK 385 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 385 (646)
-++|++++.++.+..+| .++++.+.+.++.. +.++.+ .+|..++..+.+|++.....
T Consensus 104 ~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~---------------- 167 (437)
T 4b4t_I 104 LSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPM---------------- 167 (437)
T ss_dssp EEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCC----------------
T ss_pred ceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCc----------------
Confidence 35788899888776554 36788888888865 677766 78888888888888763311
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------- 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------- 453 (646)
+....+.+.|+|+|+||||++++|++|+|.|.+|+++|++|..++ .||+||||||||
T Consensus 168 -----------~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 168 -----------VSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp -----------CCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHH
T ss_pred -----------ceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHH
Confidence 112235789999999999999999999999999999999999887 788999999999
Q ss_pred --------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC-
Q 006411 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD- 512 (646)
Q Consensus 454 --------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~- 512 (646)
+|+++++++.+|..|+..+||||||||||+|+. +|...
T Consensus 237 A~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~---------------------~R~~~~ 295 (437)
T 4b4t_I 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT---------------------KRYDSN 295 (437)
T ss_dssp HHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC---------------------CCSCSS
T ss_pred HHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc---------------------cCCCCC
Confidence 899999999999999999999999999999998 44322
Q ss_pred -CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------
Q 006411 513 -GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 513 -~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------- 570 (646)
..+....+++++||++|||+.. ..+|+||||||+|+.|||||+| |||++|+||+||.
T Consensus 296 ~~~~~~~~~~l~~LL~~lDg~~~-~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d 374 (437)
T 4b4t_I 296 SGGEREIQRTMLELLNQLDGFDD-RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED 374 (437)
T ss_dssp CSSCCHHHHHHHHHHHHHHHCCC-SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC
T ss_pred CCccHHHHHHHHHHHHHhhCcCC-CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc
Confidence 2233567899999999999987 6789999999999999999999 9999999999985
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHH
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELG 632 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~ 632 (646)
|||||||+++|++|++.|+++ ....|+++||+.|++++.|+.+.++++
T Consensus 375 vdl~~LA~~T~GfSGADI~~l~~eA~~~Air~--------------~~~~It~eDf~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 375 VNLETLVTTKDDLSGADIQAMCTEAGLLALRE--------------RRMQVTAEDFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--------------TCSCBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc--------------CCCccCHHHHHHHHHHHhCCCChhhHH
Confidence 999999999999999999976 235699999999999999987766654
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-43 Score=382.14 Aligned_cols=260 Identities=28% Similarity=0.479 Sum_probs=208.0
Q ss_pred ccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHh
Q 006411 314 VRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKL 386 (646)
Q Consensus 314 ~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l 386 (646)
++|.++..++.+..+| +.+++++.+.++.. +.+... .++..++..+.+|++....
T Consensus 104 ~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~------------------ 165 (437)
T 4b4t_L 104 LIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDP------------------ 165 (437)
T ss_dssp EEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCC------------------
T ss_pred eeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCc------------------
Confidence 4566666666665443 24677777777755 555544 6666777777777654221
Q ss_pred hhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------
Q 006411 387 RNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------ 453 (646)
Q Consensus 387 k~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------ 453 (646)
.+....+.+.|+|+|+||||++++|++|++.|.+|+++|++|..++ .||+||||||||
T Consensus 166 ---------~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 166 ---------LVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp ---------CCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred ---------hhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 1123346679999999999999999999999999999999999876 789999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD-- 512 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~-- 512 (646)
+|+++++++.+|..|+.++||||||||||+|+. +|...
T Consensus 237 ~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~---------------------~R~~~~~ 295 (437)
T 4b4t_L 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG---------------------RRFSEGT 295 (437)
T ss_dssp HHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC---------------------CCSSSCC
T ss_pred HHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccc---------------------ccccCCC
Confidence 899999999999999999999999999999998 44332
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
..+....+++++||++|||+.. ..+|+||||||+|+.|||||+| |||++|+||+||.
T Consensus 296 ~~~~~~~~~l~~lL~~lDg~~~-~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~ 374 (437)
T 4b4t_L 296 SADREIQRTLMELLTQMDGFDN-LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF 374 (437)
T ss_dssp SSTTHHHHHHHHHHHHHHSSSC-TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC
T ss_pred CcchHHHHHHHHHHHHhhcccC-CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc
Confidence 2234567899999999999987 6789999999999999999999 8999999999985
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNK 639 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k 639 (646)
||||+||+++|++|++.|+++ +...|+++||+.|++++.|+...+. +.+|.|
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~air~--------------~~~~i~~~d~~~Al~~v~~~~k~e~---~~e~~K 436 (437)
T 4b4t_L 375 DFEAAVKMSDGFNGADIRNCATEAGFFAIRD--------------DRDHINPDDLMKAVRKVAEVKKLEG---TIEYQK 436 (437)
T ss_dssp CHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHHHTCC------------
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc--------------CCCCCCHHHHHHHHHHHHhccCccc---chhhhc
Confidence 999999999999999999975 2356999999999999999876544 444543
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-43 Score=380.14 Aligned_cols=246 Identities=28% Similarity=0.497 Sum_probs=201.7
Q ss_pred Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHhhhhhhhHHHHhhhhcccCCCC
Q 006411 330 GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPH 407 (646)
Q Consensus 330 ~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~ 407 (646)
+++++.+...++.. +.+... .+|..++..+.+|++..+.. + ...-+.+.|+
T Consensus 153 ~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~--v-------------------------~~m~v~e~P~ 205 (467)
T 4b4t_H 153 AKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPS--V-------------------------TMMTVEEKPD 205 (467)
T ss_dssp CCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCC--C-------------------------CCCEEESSCS
T ss_pred CeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCc--c-------------------------ceeeecCCCC
Confidence 46777777777754 777766 88888898888888763310 0 1112567899
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------Cc
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IG 455 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vG 455 (646)
|+|+||||++++|++|+|.|.+||.+|++|..++ .||+|||||||| +|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 9999999999999999999999999999999887 889999999999 89
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHHHHcCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~eLDGl~ 533 (646)
+++++++.+|..|+.++||||||||||+++. +|... +......+++++||++|||+.
T Consensus 286 esek~ir~lF~~Ar~~aP~IIfiDEiDai~~---------------------~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 286 EGARMVRELFEMARTKKACIIFFDEIDAVGG---------------------ARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECCTTTSB---------------------CCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhcCCceEeecccccccc---------------------cccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999998 44332 233456789999999999998
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc 581 (646)
. ..+|+||||||+|+.||||++| |||++|+||+||. |||||||++||
T Consensus 345 ~-~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 345 P-RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp C-TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred C-CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 7 6789999999999999999999 9999999999985 99999999999
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVS-LNELGIYEEWN 638 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs-~~dl~~ye~w~ 638 (646)
++|++.|+++ ....|+++||+.|++++.++.. ......|.+|+
T Consensus 424 ~eAa~~Air~--------------~~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 424 TEAGMFAIRA--------------RRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHHHHHH--------------TCSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHc--------------CCCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 9999999986 2256899999999999976543 35667888886
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-43 Score=409.42 Aligned_cols=240 Identities=33% Similarity=0.611 Sum_probs=166.2
Q ss_pred CCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---
Q 006411 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--- 453 (646)
Q Consensus 378 ~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--- 453 (646)
...+|..+++.+.|... .++..+.|+|+|+||+|++++|+.|++.|.+|+++|++|..++ .||+||||||||
T Consensus 448 ~~~Df~~Al~~~~ps~~----r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtG 523 (806)
T 3cf2_A 448 TMDDFRWALSQSNPSAL----RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 523 (806)
T ss_dssp CTTHHHHHHSSSSCCCC----CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSS
T ss_pred eHHHHHHHHHhCCCccc----ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCC
Confidence 44566777777776543 3456678999999999999999999999999999999999876 789999999999
Q ss_pred ----------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhh
Q 006411 454 ----------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRF 505 (646)
Q Consensus 454 ----------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~ 505 (646)
+|+++++|+.+|+.|+..+||||||||||+|++
T Consensus 524 KT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~------------------- 584 (806)
T 3cf2_A 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK------------------- 584 (806)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------------
T ss_pred chHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhh-------------------
Confidence 899999999999999999999999999999998
Q ss_pred ccccCC--CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------
Q 006411 506 YFQRKS--DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS----------- 570 (646)
Q Consensus 506 ~~~R~s--~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~----------- 570 (646)
+|+. ...+..+++++++||++|||+.. ..+|+||||||+||.||||++| |||++||||+||.
T Consensus 585 --~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 585 --ARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---------------CHHHHHHHHHHHSSCS-SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred --ccCCCCCCCchHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 4432 23445678999999999999987 6789999999999999999999 9999999999985
Q ss_pred -------------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhh-----------hhcccCCCCccHHHHHHHHh
Q 006411 571 -------------------GYSGSDMKNLVKEASMGPLREALRQGIEIT-----------RLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 571 -------------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~-----------~~~~~~~~~Vt~eDFe~AL~ 620 (646)
||||+||+++|++|++.|+++.+....... ....+...+|+++||+.||+
T Consensus 662 ~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 741 (806)
T 3cf2_A 662 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741 (806)
T ss_dssp SCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-
T ss_pred cCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHH
Confidence 999999999999999999999765322110 01123346799999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhCC
Q 006411 621 QVRASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 621 kvrPSvs~~dl~~ye~w~k~fg~ 643 (646)
+++|||+.++++.|++|.++|+.
T Consensus 742 ~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 742 FARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------CCCC-----
T ss_pred hCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999988863
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-42 Score=375.39 Aligned_cols=256 Identities=31% Similarity=0.548 Sum_probs=211.3
Q ss_pred ccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHh
Q 006411 314 VRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKL 386 (646)
Q Consensus 314 ~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l 386 (646)
++|++++.++.+..++ ..+++++.+.++.. +.++.. .+|..++..+.+|++..... +
T Consensus 95 ~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~--v-------------- 158 (428)
T 4b4t_K 95 VIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSS--I-------------- 158 (428)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCS--S--------------
T ss_pred eeeEEEEEccCCeeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcc--h--------------
Confidence 4678888888766543 24677777777755 555555 67777777778777653210 0
Q ss_pred hhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------
Q 006411 387 RNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------ 453 (646)
Q Consensus 387 k~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------ 453 (646)
....+.+.|+|+|+||||++++|++|++.|.+|+.+|++|..++ .||+||||||||
T Consensus 159 -----------~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 159 -----------SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp -----------CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred -----------hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 11224678999999999999999999999999999999999876 789999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--C
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--D 512 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~ 512 (646)
+|+++++|+.+|..|+.++||||||||||+++. .|.. .
T Consensus 228 ~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~---------------------~R~~~~~ 286 (428)
T 4b4t_K 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---------------------KRFDAQT 286 (428)
T ss_dssp HHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC---------------------SCSSSCS
T ss_pred HHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc---------------------cccCCCC
Confidence 899999999999999999999999999999998 3322 2
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeC-CCCC-------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIP-LPSS------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~Ip-lPd~------------------- 570 (646)
..+....+++++||++|||+.. ..+|+||||||+|+.||||++| |||++|+|| +|+.
T Consensus 287 ~~~~~~~r~l~~lL~~ldg~~~-~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~ 365 (428)
T 4b4t_K 287 GSDREVQRILIELLTQMDGFDQ-STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE 365 (428)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCS-SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT
T ss_pred CCChHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc
Confidence 2334568899999999999987 6789999999999999999999 999999997 8974
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhh-cCCCCCHHHHH
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQ-VRASVSLNELG 632 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~k-vrPSvs~~dl~ 632 (646)
|||||||+++|++|++.|+++ ....|+++||+.|+.+ ++++.+.++++
T Consensus 366 ~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~--------------~~~~i~~~d~~~A~~~~~~~~~~~~~~d 425 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK--------------NRYVILQSDLEEAYATQVKTDNTVDKFD 425 (428)
T ss_dssp CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--------------CCCCCCHHHHHHHHHHhhCccCCccHhh
Confidence 999999999999999999976 2356999999999976 57777665543
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-42 Score=370.55 Aligned_cols=235 Identities=30% Similarity=0.488 Sum_probs=197.2
Q ss_pred ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHhhhhhhhHHHHhhhhcccCCCCc
Q 006411 331 NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHV 408 (646)
Q Consensus 331 ~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~V 408 (646)
++++.+.+.++.. +.++.. .+|..++..+++|++..... +......+.|++
T Consensus 126 ~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~---------------------------~~~~~~~~~p~~ 178 (434)
T 4b4t_M 126 TVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSR---------------------------VKAMEVDEKPTE 178 (434)
T ss_dssp EEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCS---------------------------CSCCEEESSCSC
T ss_pred eEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCch---------------------------hhhcccCCCCCC
Confidence 3455555666543 555544 66777777788887652210 112235678999
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------Cch
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IGE 456 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vGe 456 (646)
+|+||||++++|++|++.|++|+++|++|..++ .||+|||||||| +|+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 999999999999999999999999999999877 789999999999 899
Q ss_pred HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHHHHHcCCCC
Q 006411 457 GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 457 sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL~eLDGl~~ 534 (646)
++++++.+|..|+.++||||||||||+|+. +|.... ......+++++||++|||+.+
T Consensus 259 se~~ir~lF~~A~~~aP~IifiDEiDal~~---------------------~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKAPTIIFIDELDAIGT---------------------KRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECTHHHHC---------------------CCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHhcCCeEEeecchhhhhh---------------------ccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999998 443221 223456789999999999987
Q ss_pred CCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHHH
Q 006411 535 GSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVK 582 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc~ 582 (646)
.++|+||||||+|+.||||++| |||++|+||+||. ||||+||+++|+
T Consensus 318 -~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 318 -DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp -SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred -CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 6789999999999999999999 9999999999985 999999999999
Q ss_pred HHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCH
Q 006411 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSL 628 (646)
Q Consensus 583 eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~ 628 (646)
+|++.|+++ ....|+++||+.|+++++|+.+.
T Consensus 397 eA~~~a~r~--------------~~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 397 EAGMIALRN--------------GQSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHHHH--------------TCSSBCHHHHHHHHHSCSSSCCC
T ss_pred HHHHHHHHc--------------CCCCcCHHHHHHHHHHHhCCCCc
Confidence 999999986 23579999999999999998764
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-38 Score=324.79 Aligned_cols=222 Identities=42% Similarity=0.749 Sum_probs=193.6
Q ss_pred cccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------
Q 006411 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 401 i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------- 453 (646)
|+.+.|+++|+||+|++++|+.|++.|.+|+.+|++|.+...|++||||||||
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999999777888999999999
Q ss_pred -----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 -----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
.|++++.++.+|..|+..+|+||||||||.++. ++. ....+...+++++||.+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~---------------------~~~-~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---------------------SRS-ENESEAARRIKTEFLVQ 139 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC---------------------CSS-SCCTTHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc---------------------ccc-cccchHHHHHHHHHHHH
Confidence 577899999999999999999999999999987 443 23455678999999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------------------CCcHHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------------------------GYSGSDM 577 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-------------------------------GySGADL 577 (646)
||++.....+|+||+|||+|+.||++++|||+++|++++|+. ||||+||
T Consensus 140 ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl 219 (322)
T 1xwi_A 140 MQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 219 (322)
T ss_dssp HHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHH
T ss_pred HhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 999976567899999999999999999999999999999975 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchh---------------------------------hhhh--cccCCCCccHHHHHHHHhhc
Q 006411 578 KNLVKEASMGPLREALRQGIE---------------------------------ITRL--QKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~---------------------------------~~~~--~~~~~~~Vt~eDFe~AL~kv 622 (646)
..||++|++.|+++....... .... ......+|+++||+.||+++
T Consensus 220 ~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~ 299 (322)
T 1xwi_A 220 SIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299 (322)
T ss_dssp HHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhC
Confidence 999999999999997642100 0000 01123589999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC
Q 006411 623 RASVSLNELGIYEEWNKQFGSL 644 (646)
Q Consensus 623 rPSvs~~dl~~ye~w~k~fg~~ 644 (646)
+||+++++++.|++|.++||+.
T Consensus 300 ~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 300 KPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp CCSCCHHHHHHHHHHHHTTCSC
T ss_pred CCCCCHHHHHHHHHHHHHHccC
Confidence 9999999999999999999963
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.6e-36 Score=309.73 Aligned_cols=223 Identities=43% Similarity=0.794 Sum_probs=192.3
Q ss_pred hhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------
Q 006411 399 NEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------- 453 (646)
Q Consensus 399 ~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------- 453 (646)
..++.+.|+++|+||+|++.+|+.|++.+.+|+.+|++|.....|++||||||||
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4567889999999999999999999999999999999999877889999999999
Q ss_pred ------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
.|+.++.++.+|..|+..+|+||||||||.|.. .+ ....++..++++++||.
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---------------------~~-~~~~~~~~~~~~~~ll~ 143 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---------------------TR-GEGESEASRRIKTELLV 143 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC---------------------C-------CCTHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc---------------------cC-CCCcchHHHHHHHHHHH
Confidence 678899999999999999999999999999987 33 23344567889999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------------------CCcHHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------------------------GYSGSD 576 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-------------------------------GySGAD 576 (646)
.|+++.....+|+||+|||+|+.||++++|||++.|++++|+. ||+|+|
T Consensus 144 ~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 144 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp HHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHH
T ss_pred HhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 9999975567899999999999999999999999999999975 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchh---------------------------hhhh--cccCCCCccHHHHHHHHhhcCCCCC
Q 006411 577 MKNLVKEASMGPLREALRQGIE---------------------------ITRL--QKEDMQPVTLQDFENALPQVRASVS 627 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~---------------------------~~~~--~~~~~~~Vt~eDFe~AL~kvrPSvs 627 (646)
|..+|++|++.++++....... .... ......+|+++||+.|++.++||++
T Consensus 224 i~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 224 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp HHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 9999999999999997643100 0000 0112367999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q 006411 628 LNELGIYEEWNKQFGS 643 (646)
Q Consensus 628 ~~dl~~ye~w~k~fg~ 643 (646)
.+++..|++|.++||+
T Consensus 304 ~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 304 EDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp TTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999996
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.4e-35 Score=311.68 Aligned_cols=228 Identities=43% Similarity=0.775 Sum_probs=181.6
Q ss_pred HHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------------------
Q 006411 394 IEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------- 453 (646)
Q Consensus 394 ~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------------------- 453 (646)
.+.+...+....|+++|+||+|++.+++.|++.+.+|+.+|++|.....|++||||||||
T Consensus 34 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 34 RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp -------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred HHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 344456677789999999999999999999999999999999999877889999999999
Q ss_pred -----------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 -----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 -----------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.++.++.+|..|+..+|+||||||||.|.. .+. ...+...++++
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---------------------~r~-~~~~~~~~~~~ 171 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---------------------TRG-EGESEASRRIK 171 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------------------------CTHHHHHH
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---------------------cCC-CCcchHHHHHH
Confidence 577888999999999999999999999999987 332 23455678999
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------------------C
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------------------------G 571 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-------------------------------G 571 (646)
++||..|+++.....+|+||+|||+|+.||++++|||++.|++++|+. |
T Consensus 172 ~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G 251 (355)
T 2qp9_X 172 TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251 (355)
T ss_dssp HHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence 999999999976557899999999999999999999999999999974 9
Q ss_pred CcHHHHHHHHHHHhhhHHHHHHHhchh---------------------------hhhh--cccCCCCccHHHHHHHHhhc
Q 006411 572 YSGSDMKNLVKEASMGPLREALRQGIE---------------------------ITRL--QKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 572 ySGADL~~Lc~eAa~~Airr~l~~~~~---------------------------~~~~--~~~~~~~Vt~eDFe~AL~kv 622 (646)
|+|+||..+|++|++.|+++....... ...+ ......+|+++||+.||+++
T Consensus 252 ~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~ 331 (355)
T 2qp9_X 252 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKST 331 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHc
Confidence 999999999999999999986532100 0000 11134679999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCC
Q 006411 623 RASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 623 rPSvs~~dl~~ye~w~k~fg~ 643 (646)
+||++++++..|++|.++||+
T Consensus 332 ~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 332 RPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp CCSSCHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999996
No 11
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=311.37 Aligned_cols=239 Identities=61% Similarity=1.083 Sum_probs=200.6
Q ss_pred hhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------
Q 006411 382 LPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------- 453 (646)
Q Consensus 382 ~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------- 453 (646)
..+.|+.+++.+++.+.++++...++++|+||+|++.+++.|++.+.+|+.++++|.....++++|||||||
T Consensus 55 ~~~~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 55 VDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp --CCSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred HHHHhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 445677888889999999999999999999999999999999999999999999998877888999999999
Q ss_pred -----------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 454 -----------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 454 -----------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
.|+.++.++.+|..|+..+|+||||||||.|+. .+
T Consensus 135 ~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---------------------~~- 192 (357)
T 3d8b_A 135 KCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---------------------QR- 192 (357)
T ss_dssp HHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB---------------------C--
T ss_pred HHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc---------------------cC-
Confidence 567888999999999999999999999999987 33
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------- 570 (646)
..+.+....+++++||..|+++.. ...+|+||+|||+++.||++++|||+..+++++|+.
T Consensus 193 ~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~ 272 (357)
T 3d8b_A 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS 272 (357)
T ss_dssp -----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC
T ss_pred CCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc
Confidence 233455678899999999999864 246899999999999999999999999999999974
Q ss_pred ------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006411 571 ------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWN 638 (646)
Q Consensus 571 ------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~ 638 (646)
||+|+||..||++|++.++++... ............+|+++||..|+.+++||++.++++.|++|.
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~--~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~ 350 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT--ADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWN 350 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhh--hhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999986311 111112223457899999999999999999999999999999
Q ss_pred HHhCCC
Q 006411 639 KQFGSL 644 (646)
Q Consensus 639 k~fg~~ 644 (646)
++||+.
T Consensus 351 ~~~g~~ 356 (357)
T 3d8b_A 351 KTFGCG 356 (357)
T ss_dssp HHHSCC
T ss_pred HHhCCC
Confidence 999974
No 12
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=9.7e-36 Score=322.13 Aligned_cols=231 Identities=42% Similarity=0.749 Sum_probs=190.5
Q ss_pred hhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-----------------
Q 006411 391 PRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP----------------- 453 (646)
Q Consensus 391 p~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP----------------- 453 (646)
..+.+.+...+....|+++|+||+|++.+++.|++.+.+|+.+|++|.+...|++||||||||
T Consensus 114 ~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~ 193 (444)
T 2zan_A 114 KKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN 193 (444)
T ss_dssp ----------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS
T ss_pred HHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345556677788899999999999999999999999999999999998766788999999999
Q ss_pred ---------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhh
Q 006411 454 ---------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESS 518 (646)
Q Consensus 454 ---------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s 518 (646)
.|+.++.++.+|..|+..+|+||||||||.+++ .+. ...++..
T Consensus 194 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---------------------~~~-~~~~~~~ 251 (444)
T 2zan_A 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---------------------SRS-ENESEAA 251 (444)
T ss_dssp SEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC---------------------CSS-CCCCGGG
T ss_pred CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---------------------CCC-CccccHH
Confidence 455667889999999999999999999999987 443 3345667
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------------------
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------------- 570 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~---------------------------- 570 (646)
.+++++||..|+++.....+|+||+|||+|+.||++++|||++.+++++|+.
T Consensus 252 ~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 252 RRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp HHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 8999999999999875467899999999999999999999999999999975
Q ss_pred ---CCcHHHHHHHHHHHhhhHHHHHHHhch-h-----------------hh---------------hhc--ccCCCCccH
Q 006411 571 ---GYSGSDMKNLVKEASMGPLREALRQGI-E-----------------IT---------------RLQ--KEDMQPVTL 612 (646)
Q Consensus 571 ---GySGADL~~Lc~eAa~~Airr~l~~~~-~-----------------~~---------------~~~--~~~~~~Vt~ 612 (646)
||||+||..+|++|++.|+++.+.... . .+ ... .....+|++
T Consensus 332 ~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (444)
T 2zan_A 332 KTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 411 (444)
T ss_dssp HTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCH
Confidence 999999999999999999999764310 0 00 000 012358999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 006411 613 QDFENALPQVRASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 613 eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg~ 643 (646)
+||+.||++++||+++++++.|++|+++||+
T Consensus 412 ~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 412 WDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp HHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999996
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-35 Score=340.76 Aligned_cols=217 Identities=33% Similarity=0.565 Sum_probs=187.3
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...|.|+|+||||++++|++|+|+|.+||++|++|..++ .||+||||||||
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 356899999999999999999999999999999999987 899999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
+|++++.++.+|+.|+.++||||||||||+|++ +|. ...++..++++++||.+||
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~---------------------~r~-~~~~~~~~riv~~LL~~md 333 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---------------------KRE-KTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC---------------------TTT-TCCCTTHHHHHHHHHTHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhccccc---------------------ccC-CCCChHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 443 3344566899999999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMK 578 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~ 578 (646)
|+.. ..+|+||+|||+|+.||+|++| |||++|+|++||. ||+|+||.
T Consensus 334 g~~~-~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 334 GLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp HCCG-GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH
T ss_pred cccc-cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH
Confidence 9987 5689999999999999999999 9999999999985 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhh---hcccCCCCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHHhC
Q 006411 579 NLVKEASMGPLREALRQGIEITR---LQKEDMQPVTLQDFENALPQVRAS-----------VSLNELGIYEEWNKQFG 642 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~---~~~~~~~~Vt~eDFe~AL~kvrPS-----------vs~~dl~~ye~w~k~fg 642 (646)
.||++|++.|+++.......... ........|+++||..|+..++|+ ++|+++.++++.+++..
T Consensus 413 ~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~ 490 (806)
T 3cf2_A 413 ALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQ 490 (806)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHH
Confidence 99999999999987543211100 011123468999999999999864 67889888888877654
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=7.1e-34 Score=291.19 Aligned_cols=222 Identities=36% Similarity=0.666 Sum_probs=186.3
Q ss_pred hhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------
Q 006411 399 NEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------ 453 (646)
Q Consensus 399 ~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------ 453 (646)
+++..+.|+++|+||+|++.+++.|++.+.+|+.+|+.|..++ .++++|||||||
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 3556778999999999999999999999999999999999776 678999999999
Q ss_pred -------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHH
Q 006411 454 -------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQ 524 (646)
Q Consensus 454 -------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilne 524 (646)
+|+.++.++.+|+.|+...|+||||||||.|+. .+.. ........+++++
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~---------------------~~~~~~~~~~~~~~~~~~~ 141 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK---------------------ARGGNIGDGGGAADRVINQ 141 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH---------------------HHTTTTCCSSCSCCHHHHH
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh---------------------ccCCCcCCcchHHHHHHHH
Confidence 456667889999999999999999999999987 2211 1112334678999
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GY 572 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------Gy 572 (646)
||..||++.. ..+|+||+|||+|+.||++++| ||++.|+|++|+. ||
T Consensus 142 lL~~l~~~~~-~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~ 220 (301)
T 3cf0_A 142 ILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 220 (301)
T ss_dssp HHHHHHSSCT-TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSC
T ss_pred HHHHhhcccC-CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCC
Confidence 9999999876 5689999999999999999999 9999999999974 99
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHhchhhhh--------h---cccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 006411 573 SGSDMKNLVKEASMGPLREALRQGIEITR--------L---QKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQF 641 (646)
Q Consensus 573 SGADL~~Lc~eAa~~Airr~l~~~~~~~~--------~---~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~f 641 (646)
+|+||+++|++|++.|+++.+........ . .......|+++||+.||++++||++++++..|++|+++|
T Consensus 221 sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 221 SGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999886543211000 0 012235799999999999999999999999999999998
Q ss_pred C
Q 006411 642 G 642 (646)
Q Consensus 642 g 642 (646)
.
T Consensus 301 ~ 301 (301)
T 3cf0_A 301 Q 301 (301)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=5.9e-32 Score=272.73 Aligned_cols=229 Identities=51% Similarity=0.922 Sum_probs=186.9
Q ss_pred hHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------
Q 006411 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------ 453 (646)
Q Consensus 392 ~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------ 453 (646)
.+.+.+.+++....|+++|+||+|.+.+++.|++.+.+|+.+|++|.+.+.++++|||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 35667778888899999999999999999999999999999999999887888999999999
Q ss_pred -------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 454 -------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 454 -------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
.|+++..++.+|..|....|+||||||||.++. .+. ...++...+
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---------------------~~~-~~~~~~~~~ 139 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS---------------------ERS-SSEHEASRR 139 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB---------------------CC------CCSHH
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc---------------------ccc-cCcchHHHH
Confidence 566788999999999999999999999999987 332 223445578
Q ss_pred HHHHHHHHHcCCCCC--CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------------------
Q 006411 521 LKTQFLIEMEGFDSG--SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------------- 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~--~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~---------------------------- 570 (646)
+.++||..|+++... ..+|+||+|||+|+.||++++|||+..+++++|+.
T Consensus 140 ~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~ 219 (297)
T 3b9p_A 140 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219 (297)
T ss_dssp HHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 899999999998652 25799999999999999999999999999999974
Q ss_pred ---CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 006411 571 ---GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGSL 644 (646)
Q Consensus 571 ---GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg~~ 644 (646)
||+|+||..+|++|++.++++.... ...........+|+.+||..|+.+++||++.+++..|++|.++||++
T Consensus 220 ~~~g~~~~~l~~l~~~a~~~a~r~~~~~--~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 220 ITDGYSGSDLTALAKDAALEPIRELNVE--QVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp HTTTCCHHHHHHHHHHHTTHHHHTCC----------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhh--hcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 9999999999999999999863111 01111222346799999999999999999999999999999999975
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=3.4e-32 Score=277.19 Aligned_cols=202 Identities=37% Similarity=0.638 Sum_probs=155.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..|+++|+||+|++++|++|++.|.+|+.+++.|..++ .+++|+||||||
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46899999999999999999999999999999999876 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.++.++.++.+|+.|+...|||+||||||.++. .+.. .......+++++++.+|+|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~---------------------~r~~-~~~~~~~~~~~~~l~~Lsg 140 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP---------------------RRSD-RETGASVRVVNQLLTEMDG 140 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------------------------CTTHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc---------------------ccCC-CcchHHHHHHHHHHHhhhc
Confidence 456788999999999999999999999999876 2211 1112234688999999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------------------------------CCcH
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-----------------------------------GYSG 574 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-----------------------------------GySG 574 (646)
... ...++++++||+|+.||+|++| |||+.|+|++|+. ||||
T Consensus 141 g~~-~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sg 219 (274)
T 2x8a_A 141 LEA-RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 219 (274)
T ss_dssp CCS-TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCH
T ss_pred ccc-cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCH
Confidence 976 5689999999999999999999 9999999999974 8999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHH
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNEL 631 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl 631 (646)
+||..+|++|++.|+++.+..... ........|+++||+.|+++++||++.+++
T Consensus 220 adl~~l~~~a~~~a~~~~~~~~~~---~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 220 ADLSALVREASICALRQEMARQKS---GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc---cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 999999999999999875432111 011223579999999999999999998875
No 17
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=9.4e-31 Score=276.63 Aligned_cols=237 Identities=51% Similarity=0.937 Sum_probs=189.2
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------ 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------ 453 (646)
+..+++.+.+.+..+++...++++|+||+|.+.+++.|.+++.+|+.++++|.+.+.++++|||||||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp -------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred cccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455555666777888999999999999999999999999999999999999888888999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCC
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE 514 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~ 514 (646)
.|+.+..++.+|..|+..+|+||||||||.|+. .+ ..+.
T Consensus 170 ~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~---------------------~~-~~~~ 227 (389)
T 3vfd_A 170 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC---------------------ER-REGE 227 (389)
T ss_dssp HHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------------------------
T ss_pred HhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc---------------------cC-CCcc
Confidence 567788899999999999999999999999987 33 2334
Q ss_pred chhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-----------------------
Q 006411 515 HESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------------- 570 (646)
Q Consensus 515 ~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------------- 570 (646)
+....+++++||..|+++.. ...+|+||+|||+++.||++++|||+..|+|++|+.
T Consensus 228 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~ 307 (389)
T 3vfd_A 228 HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 307 (389)
T ss_dssp -CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHH
T ss_pred chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45678899999999999875 246799999999999999999999999999999974
Q ss_pred --------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhC
Q 006411 571 --------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 571 --------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg 642 (646)
||+++||..||+.|++.++++.... ............|+.+||..|+..++|+++.++++.|++|.++||
T Consensus 308 ~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~--~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g 385 (389)
T 3vfd_A 308 AQLARMTDGYSGSDLTALAKDAALGPIRELKPE--QVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385 (389)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-----CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh--hhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999873211 111122234467999999999999999999999999999999999
Q ss_pred CCCC
Q 006411 643 SLSL 646 (646)
Q Consensus 643 ~~~~ 646 (646)
+.++
T Consensus 386 ~~~~ 389 (389)
T 3vfd_A 386 DTTV 389 (389)
T ss_dssp ----
T ss_pred CccC
Confidence 8764
No 18
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=3.2e-30 Score=298.08 Aligned_cols=221 Identities=35% Similarity=0.646 Sum_probs=162.6
Q ss_pred hcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------
Q 006411 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------- 453 (646)
Q Consensus 400 ~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------- 453 (646)
+.....|.++|+||+|++++|+.|.+.+.+|+.+++.|...+ .+++++||||||
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 345678899999999999999999999999999999998876 678999999999
Q ss_pred ------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQF 525 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneL 525 (646)
+|+.++.++.+|+.|+...||||||||||+|+. .|.... ......+++++|
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~---------------------~r~~~~~~~~~~~~~v~~~L 604 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK---------------------ARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCC---------------------TTTTCCSHHHHHHHHHHHHH
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhh---------------------hccCCCCCcchhHHHHHHHH
Confidence 578889999999999999999999999999987 443322 234568999999
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCc
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYS 573 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GyS 573 (646)
|.+||++.. ..+|+||+|||+|+.||+|++| ||++.|+||+|+. |||
T Consensus 605 L~~ld~~~~-~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 683 (806)
T 1ypw_A 605 LTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp HTTCC-------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSC
T ss_pred HHHHhcccc-cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccC
Confidence 999999976 5689999999999999999999 9999999999986 899
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhchhhh-----------hhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhC
Q 006411 574 GSDMKNLVKEASMGPLREALRQGIEIT-----------RLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 574 GADL~~Lc~eAa~~Airr~l~~~~~~~-----------~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg 642 (646)
|+||..+|++|++.|+++.+....... ........+|+++||+.|++.++||++.++++.|++|.++|+
T Consensus 684 gadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 684 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp CHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999987544321100 011123457999999999999999999999999999998864
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.7e-26 Score=226.35 Aligned_cols=207 Identities=37% Similarity=0.675 Sum_probs=164.1
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
....|+++|+||+|++.+++.|.+.+..|+.++++|...+ .+++++||||||
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3567899999999999999999999999999999999876 678999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~ 527 (646)
.|+.+..++.+|..++...|+||||||||.++. ++... +........+..++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---------------------~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA---------------------KRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB---------------------CCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc---------------------cCccccCCccHHHHHHHHHHHH
Confidence 667788999999999999999999999999987 33221 123345678889999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
.++++.. ..+++||+|||.|+.||++++| ||++.++++.|+. ||+++
T Consensus 147 ~~~~~~~-~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 147 EMDGFDA-RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HHHTTCS-SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHH
T ss_pred HhhCCCC-CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHH
Confidence 9999876 5689999999999999999999 9999999999974 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhCCC
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA--SVSLNELGIYEEWNKQFGSL 644 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP--Svs~~dl~~ye~w~k~fg~~ 644 (646)
||..+|+.|.+.|+++ ....|+.+||..|+.++.+ +.+...-..|..|...||+.
T Consensus 226 ~i~~l~~~a~~~a~~~--------------~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRE--------------LRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp HHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred HHHHHHHHHHHHHHHh--------------ccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 9999999999998865 1246999999999998854 23334457899999999863
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=1.4e-26 Score=254.46 Aligned_cols=208 Identities=33% Similarity=0.570 Sum_probs=165.7
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------- 453 (646)
+.++|++|+|++.+++.|++.+.+|+.+|++|..++ .++++|||||||
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 568999999999999999999999999999999886 778999999999
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.|+.+..++.+|..|...+|+||||||||.|+. ++. ....+...+++++||..|+++.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~---------------------~~~-~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---------------------KRE-KTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB---------------------CTT-SCCCHHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc---------------------ccc-cccchHHHHHHHHHHHHhhccc
Confidence 678888999999999999999999999999987 332 2334566889999999999987
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc 581 (646)
. ..+|+||+|||+|+.||++++| ||++.|+|++|+. ||+|+||..||
T Consensus 337 ~-~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 337 Q-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp T-TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred c-CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHH
Confidence 6 5689999999999999999999 9999999999974 99999999999
Q ss_pred HHHhhhHHHHHHHhchhh-h--hhcccCCCCccHHHHHHHHhhcC-----------CCCCHHHHHHHHH
Q 006411 582 KEASMGPLREALRQGIEI-T--RLQKEDMQPVTLQDFENALPQVR-----------ASVSLNELGIYEE 636 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~-~--~~~~~~~~~Vt~eDFe~AL~kvr-----------PSvs~~dl~~ye~ 636 (646)
++|++.++++........ . .........|+++||+.|+++++ |+|+|+|+++|--
T Consensus 416 ~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp HHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred HHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 999999998753221000 0 00011224699999999999987 5688999988753
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.92 E-value=4.9e-25 Score=241.95 Aligned_cols=183 Identities=39% Similarity=0.680 Sum_probs=156.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
.+.++|+||+|+++++++|++.+.. +..|+.|..++ .+|+||||+|||
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 6789999999999999999999876 77888888776 778999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHHc
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eLD 530 (646)
+|.++..++.+|..|+..+||||||||||.|.. ++.. .+.+....+++++||.+||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~---------------------~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR---------------------HRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC---------------------C---------CHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---------------------hcccccCcCcHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999987 3321 2333445678999999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMK 578 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~ 578 (646)
++.. ..+|+||+|||+|+.||++++| |||+.|+|++|+. ||+|+||.
T Consensus 148 ~~~~-~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~ 226 (476)
T 2ce7_A 148 GFDS-KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE 226 (476)
T ss_dssp HSCG-GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred ccCC-CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH
Confidence 9876 5689999999999999999999 9999999999983 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
++|++|++.|.++ ....|+.+||..|+.++.+
T Consensus 227 ~lv~~Aal~A~~~--------------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 227 NLVNEAALLAARE--------------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHc--------------CCCeecHHHHHHHHHHHhc
Confidence 9999999888754 2356999999999999865
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.92 E-value=4.3e-24 Score=211.77 Aligned_cols=185 Identities=37% Similarity=0.647 Sum_probs=155.1
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
+..++++|+||+|++.+++.|.+.+.+ +.+++.|...+ .+++|+||||||
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 457889999999999999999998876 88888888765 678999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~e 528 (646)
.|++++.++.+|+.|+...|+|+||||||.+.. .+.. .+......++++++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~---------------------~~~~~~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---------------------QRGAGLGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC---------------------CCSTTSCCTTCHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc---------------------CCCCCcCCCchHHHHHHHHHHHH
Confidence 456678899999999999999999999999987 2221 12233445789999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
|+++.. ..+++||+|||+|+.||++++| ||++.+++++|+. ||+++|
T Consensus 142 l~~~~~-~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 142 MDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD 220 (257)
T ss_dssp HHTCCS-SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH
T ss_pred hhCccc-CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHH
Confidence 999876 5689999999999999999999 9999999999974 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
|..+|++|++.|+++ ....|+.+||+.|+..+..
T Consensus 221 l~~l~~~a~~~a~~~--------------~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 221 LANLVNEAALFAARG--------------NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--------------CCCcccHHHHHHHHHHHhc
Confidence 999999999888754 2357999999999998764
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=213.87 Aligned_cols=183 Identities=36% Similarity=0.601 Sum_probs=139.5
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------- 453 (646)
|+++|+||+|++.+|+.|++.+.+ +..++.|...+ .++++|||||||
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 679999999999999999999877 88888888766 678999999999
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC---CchhhHHHHHHHHHHHc
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG---EHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~---~~e~s~rilneLL~eLD 530 (646)
.+.++..++.+|..|....|+||||||||.++. ++.... ........+++||..|+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~---------------------~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGK---------------------KRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------------CHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc---------------------cccccccCccchhHHHHHHHHHHHhh
Confidence 456778889999999999999999999999987 222111 12233567899999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------------------CCcHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------------------------GYSGSD 576 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------------------------GySGAD 576 (646)
++.. ..+++||+|||.++.||++++| ||++.++|++|+. ||+|+|
T Consensus 139 ~~~~-~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 139 GMGT-TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp TCCT-TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred CcCC-CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 9876 5689999999999999999999 9999999999974 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
|..+|++|++.|+++. ...|+.+||..|++++.|+
T Consensus 218 l~~l~~~a~~~a~~~~--------------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 218 IANICNEAALHAAREG--------------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHHTC----------------------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------------CCCCCHHHHHHHHHHhccC
Confidence 9999999999988652 2468899999999988764
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.89 E-value=2.5e-23 Score=229.57 Aligned_cols=185 Identities=37% Similarity=0.646 Sum_probs=157.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..++++|+||+|+++++++|++.+.. +..+..|..++ .+++||||||||
T Consensus 24 ~~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102 (499)
T ss_dssp SCCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred cCCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence 34899999999999999999999876 77888888775 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHH
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eL 529 (646)
.|...+.++.+|+.|+...|||+||||||.+.. .+.. ...+....+++++||.+|
T Consensus 103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~---------------------~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC---------------------CSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH---------------------hhccCcCCCcHHHHHHHHHHHHHh
Confidence 456778899999999888999999999999976 3321 122344567899999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
+|... ...++||+|||+|+.||++++| |||+.|+|++|+. ||+|+||
T Consensus 162 dg~~~-~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 162 DGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 240 (499)
T ss_dssp GGCCS-SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHH
T ss_pred ccccc-CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHH
Confidence 99876 5679999999999999999999 9999999999974 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
+++|++|++.|.++ ....|+++||+.|+.++.+.
T Consensus 241 ~~lv~~Aa~~A~~~--------------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 241 ENLLNEAALLAARE--------------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHHHTTT--------------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh--------------CCCccCHHHHHHHHHHHhcc
Confidence 99999999877643 22569999999999998764
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.89 E-value=1.1e-22 Score=201.30 Aligned_cols=184 Identities=37% Similarity=0.662 Sum_probs=149.7
Q ss_pred hcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------
Q 006411 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------- 453 (646)
Q Consensus 400 ~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------- 453 (646)
.+....|.++|+||+|+++++.+|++.+.. +..+..+.... ..++|+||||||
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 456788999999999999999999998776 56677777664 677899999999
Q ss_pred ------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQF 525 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneL 525 (646)
.+...+.++.+|+.+....|+++||||||.++. .+.. ........++++++
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~---------------------~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC------------------------------CHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc---------------------ccCccccccchHHHHHHHHH
Confidence 345567788999999888899999999999986 2211 11233456788999
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCc
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYS 573 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GyS 573 (646)
+.+|+|... ...++++++||+|+.||++++| ||++.|+|++|+. ||+
T Consensus 143 l~~l~g~~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 143 LVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHTCCT-TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred HHHHhCCCC-CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 999999876 5579999999999999999999 9999999999974 999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHh
Q 006411 574 GSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 574 GADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~ 620 (646)
|+||+.+|++|++.|+++ ....|+++||++|+.
T Consensus 222 ~~dl~~~~~~a~~~a~~~--------------~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 222 GADLENLLNEAALLAARE--------------GRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh--------------cCCCcCHHHHHHHhC
Confidence 999999999999888754 124699999999873
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.87 E-value=2.9e-24 Score=213.46 Aligned_cols=192 Identities=33% Similarity=0.555 Sum_probs=151.8
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCCCch------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPIGE------------------------ 456 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPPvGe------------------------ 456 (646)
..+.|+++|+||+|.+.+++.|++.+.+ +.+++.|...+ .+++|+||||||+.+
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 3467899999999999999999998876 88898888765 678999999999333
Q ss_pred -------HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC---CCchhhHHHHHHHH
Q 006411 457 -------GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD---GEHESSRRLKTQFL 526 (646)
Q Consensus 457 -------sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~---~~~e~s~rilneLL 526 (646)
++..++.+|+.|....|+||||||||.+.. .+... .......+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---------------------~~~~~~~~~~~~~~~~~~~~ll 139 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK---------------------SRAAGGVVSGNDEREQTLNQLL 139 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------------------------CCCSCSSTTTTT
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc---------------------cccccccCCCchhHHHHHHHHH
Confidence 233445667778888899999999999986 22111 11112234678899
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcH
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSG 574 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySG 574 (646)
..|+++.....+|+||+|||+++.||++++| ||+..|+|++|+. ||+|
T Consensus 140 ~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g 219 (268)
T 2r62_A 140 AEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAG 219 (268)
T ss_dssp TTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCH
T ss_pred HHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCH
Confidence 9999987645679999999999999999999 9999999999975 8999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHH
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLN 629 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~ 629 (646)
+||..+|+.|++.|+.+ ....|+.+||..|+.++.|+....
T Consensus 220 ~dl~~l~~~a~~~a~~~--------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 220 ADLANIINEAALLAGRN--------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp HHHHHHHHHHHHTTSSS--------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHh--------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 99999999998776532 235799999999999999987543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.86 E-value=4.5e-21 Score=193.12 Aligned_cols=182 Identities=37% Similarity=0.663 Sum_probs=148.0
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
+...|+++|+||+|+++++++|++.+.. +..+..+.... ..++|+||+|||
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 4456899999999999999999998766 56667776654 667899999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~ 527 (646)
.+...+.++.+|+.+....|+++||||||.+.. .+.. .........++++++.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~---------------------~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC---------------------C--------CHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc---------------------ccccccCCcchHHHHHHHHHHH
Confidence 344556788899999888999999999999976 2211 1122344678899999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
+|+|... ...++++++||+|+.||++++| ||++.|+|++|+. ||+|+
T Consensus 169 ~lsgg~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 169 EMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HHTTCCT-TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HHhCCCC-CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHH
Confidence 9999875 4579999999999999999999 9999999999974 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHh
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~ 620 (646)
||+.+|++|++.|+++ ....|+.+||++|++
T Consensus 248 dl~~l~~~a~~~a~~~--------------~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 248 DLENLLNEAALLAARE--------------GRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHHHHHT--------------TCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHh--------------CCCCcCHHHHHHHhC
Confidence 9999999999887653 124699999999874
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=2.9e-20 Score=215.16 Aligned_cols=199 Identities=34% Similarity=0.580 Sum_probs=167.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..++++|+||+|++.+++.|++.+.+|+.+|++|..++ .++.+|||||||
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45689999999999999999999999999999999886 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|+.+..++.+|+.|....|+|+||||||.++. .+. ....+...+++.+|+..|++
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~---------------------~~~-~~~~~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---------------------KRE-KTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSC---------------------TTS-CCCSHHHHHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhh---------------------ccc-cccchHHHHHHHHHHHHhhh
Confidence 577888999999999999999999999999987 332 23345567899999999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHH
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKN 579 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~ 579 (646)
+.. ...|+||+|||+|+.||++++| ||++.++++.|+. ||+++|+..
T Consensus 335 ~~~-~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~ 413 (806)
T 1ypw_A 335 LKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp SCT-TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHH
T ss_pred hcc-cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHH
Confidence 987 5689999999999999999999 9999999999974 899999999
Q ss_pred HHHHHhhhHHHHHHHhch-hhhh--hcccCCCCccHHHHHHHHhhcCCC
Q 006411 580 LVKEASMGPLREALRQGI-EITR--LQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 580 Lc~eAa~~Airr~l~~~~-~~~~--~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
+|.+|++.++++...... .... ........++.+||..++....|+
T Consensus 414 l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 414 LCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCch
Confidence 999999999886432110 0000 011234568899999999988764
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.64 E-value=9.5e-17 Score=164.30 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=75.4
Q ss_pred CCCccccccCCC-------------------------------CchHHHHHHHHHHHh----hhcCCeeeeehhhhHHhh
Q 006411 442 SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVA----SCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 442 ~PprGVLLyGPP-------------------------------vGesek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~ 486 (646)
.+|+|+|||||| +|+.+..++.+|..| +..+||||||||||.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 668999999999 677889999999999 677999999999999987
Q ss_pred hcccccccchhhhhhhhhhccccCCCC-CchhhHHHHHHHHHHHcCCC--------C--CCCcEEEEEecCCCCcCCHHH
Q 006411 487 QMLPYMHVHHIKLFCLKRFYFQRKSDG-EHESSRRLKTQFLIEMEGFD--------S--GSEQILLVGATNRPQELDEAA 555 (646)
Q Consensus 487 k~~~~~~~~~~~~~~~kr~~~~R~s~~-~~e~s~rilneLL~eLDGl~--------~--~~~~VlVIaATNrPd~LDpAL 555 (646)
.+.+.. .....+.+.+.|+..||+.. . ...+|+||+|||+++.||+|+
T Consensus 114 ---------------------~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al 172 (293)
T 3t15_A 114 ---------------------RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPL 172 (293)
T ss_dssp -------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHH
T ss_pred ---------------------CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHH
Confidence 222211 12245678899999998654 1 245799999999999999999
Q ss_pred Hh--ccccEEEeC
Q 006411 556 RR--RLTKRLYIP 566 (646)
Q Consensus 556 lR--RFDr~I~Ip 566 (646)
+| |||+.|++|
T Consensus 173 ~R~~R~d~~i~~P 185 (293)
T 3t15_A 173 IRDGRMEKFYWAP 185 (293)
T ss_dssp HHHHHEEEEEECC
T ss_pred hCCCCCceeEeCc
Confidence 99 999999854
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.61 E-value=3.4e-17 Score=177.23 Aligned_cols=147 Identities=18% Similarity=0.338 Sum_probs=101.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------- 453 (646)
.|...|++|+|.+++++.+.+.+.. + .....|++|+||||||
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-~------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-I------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-H------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-H------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4677899999999999999988754 2 1223567999999999
Q ss_pred --CchHHHHHHHHHHHh---hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC---------------
Q 006411 454 --IGEGEKLVRALFGVA---SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--------------- 513 (646)
Q Consensus 454 --vGesek~Vr~lF~~A---r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--------------- 513 (646)
.|++++ ++.+|..| +..+||||||||||+|+.+ |....
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~---------------------r~~~~~~~~~~~~~~~~~~l 161 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPC---------------------ETENPMGGYGKTISHVIIGL 161 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC-----------------------------------CEEEEE
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccc---------------------cCCCCCCCcchHHHHHHHHH
Confidence 456666 88899999 8889999999999999972 22211
Q ss_pred ---CchhhHHHHHHHHHHHc--CCCCCCCcEEEEEecCCCCcCCHHHHh--cccc--EEEeCCCCC--------------
Q 006411 514 ---EHESSRRLKTQFLIEME--GFDSGSEQILLVGATNRPQELDEAARR--RLTK--RLYIPLPSS-------------- 570 (646)
Q Consensus 514 ---~~e~s~rilneLL~eLD--Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr--~I~IplPd~-------------- 570 (646)
+.+...++.++++..|+ ++.. .+.|+|++|||+|+.+|+|++| |||+ .+++|+|+.
T Consensus 162 ~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~ 240 (456)
T 2c9o_A 162 KTAKGTKQLKLDPSIFESLQKERVEA-GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240 (456)
T ss_dssp EETTEEEEEEECHHHHHHHHHTTCCT-TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH
T ss_pred hccccchhHhhhHHHHHHHhhccCCC-CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH
Confidence 01112234556777776 4433 4567777999999999999998 9999 788999964
Q ss_pred -----------CCcHHHHHHHHHH
Q 006411 571 -----------GYSGSDMKNLVKE 583 (646)
Q Consensus 571 -----------GySGADL~~Lc~e 583 (646)
| |+||.++|..
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHHHHTC-----------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHhh
Confidence 8 9999999954
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.40 E-value=1.4e-13 Score=138.68 Aligned_cols=175 Identities=15% Similarity=0.217 Sum_probs=117.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccC----CCCCccccccCCCCch------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGC----RSPGKGLLLFGPPIGE------------------------------ 456 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~----~~PprGVLLyGPPvGe------------------------------ 456 (646)
.+|+|++.+++.|.+.+.++.. +..+... ..++.++||||||+.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 4899999999999999988653 4444322 2445679999999333
Q ss_pred --------HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 457 --------GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 457 --------sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
....++.+|..+ .++||||||||.|+. .+.. ......+++.|+..
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~---------------------~~~~---~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYR---------------------PDNE---RDYGQEAIEILLQV 162 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCC---------------------CC------CCTHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhcc---------------------CCCc---ccccHHHHHHHHHH
Confidence 334444555544 478999999999976 2211 22345688899999
Q ss_pred HcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC---------------------------C-----
Q 006411 529 MEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS---------------------------G----- 571 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~---------------------------G----- 571 (646)
|+... .+++||+|||.++ .+||+|++||+.+|+|+.|+. .
T Consensus 163 l~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~ 239 (309)
T 3syl_A 163 MENNR---DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLR 239 (309)
T ss_dssp HHHCT---TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred HhcCC---CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 98743 4789999998764 368999999999999999985 1
Q ss_pred ------CcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHH
Q 006411 572 ------YSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENA 618 (646)
Q Consensus 572 ------ySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~A 618 (646)
-++.+|.++|+.|.+.+..+.+... .......+...|+.+||..+
T Consensus 240 ~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~--~~~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 240 RNQPHFANARSIRNALDRARLRQANRLFTAS--SGPLDARALSTIAEEDIRAS 290 (309)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHC-----CEEHHHHHEECHHHHHTS
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHhhccHHHhccc
Confidence 2367777777777776666654321 01111222345666676653
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.38 E-value=8.1e-14 Score=152.06 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=57.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCC--------------------------------Cc-
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPP--------------------------------IG- 455 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPP--------------------------------vG- 455 (646)
++|+|++++|+.|..++..|.+++.++...+ .++++|||+||| +|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 5899999999999999999988888877664 467999999999 33
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSG 535 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~ 535 (646)
+.++.++.+|+.|+.. +++||+|.+.. .......++++++||.+|||+..
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~-------------------------~~~~~~e~rvl~~LL~~~dg~~~- 144 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA-------------------------RAEDVAEERILDALLPPAKNQWG- 144 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc-------------------------cchhhHHHHHHHHHHHHhhcccc-
Confidence 3678888888888764 45788776543 12233457999999999999976
Q ss_pred CCcEEEEEe-cCCCCcCCHHHHh--ccccEEEeCCCCCC
Q 006411 536 SEQILLVGA-TNRPQELDEAARR--RLTKRLYIPLPSSG 571 (646)
Q Consensus 536 ~~~VlVIaA-TNrPd~LDpALlR--RFDr~I~IplPd~G 571 (646)
...| +++ ||+|+.||+||+| |||+.|+|++|+..
T Consensus 145 ~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 145 EVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp ---------------------------------------
T ss_pred cccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 3344 455 9999999999999 99999999999873
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.27 E-value=1.2e-11 Score=123.85 Aligned_cols=139 Identities=24% Similarity=0.351 Sum_probs=98.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccC--CCCCccccccCCCCchHH------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGC--RSPGKGLLLFGPPIGEGE------------------------------ 458 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~--~~PprGVLLyGPPvGese------------------------------ 458 (646)
++|+|.+.+++.|...+..++.++.+.... ..++.++||||||+.++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 569999999999999998876665554432 245689999999933332
Q ss_pred ---HHHHHHHHHh-----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 459 ---KLVRALFGVA-----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 459 ---k~Vr~lF~~A-----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
..++.+|..+ +...++||||||||.+.. .....+.......+.+.|+..|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~---------------------~~~~~~~~~~~~~~~~~Ll~~le 153 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK---------------------KGEYSGADVSREGVQRDLLPLVE 153 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC---------------------CSSCCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc---------------------cccccccchhHHHHHHHHHHHhc
Confidence 3344444422 112478999999999976 32222233333456788999998
Q ss_pred CCCC-------CCCcEEEEEe----cCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDS-------GSEQILLVGA----TNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~-------~~~~VlVIaA----TNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+..- ...+++||+| |+.|..+++++++||+..|+|+.|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~ 204 (310)
T 1ofh_A 154 GSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA 204 (310)
T ss_dssp CCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred CCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCH
Confidence 7521 1246888888 67899999999999998899999874
No 34
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.23 E-value=2.3e-11 Score=121.53 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCCccccccCCC----------------------------C----chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcc
Q 006411 442 SPGKGLLLFGPP----------------------------I----GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQML 489 (646)
Q Consensus 442 ~PprGVLLyGPP----------------------------v----Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~ 489 (646)
.++.++|||||| . +.....++.+|+.+....++||||||||.|+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--- 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD--- 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT---
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc---
Confidence 567899999999 1 12235678889988888899999999999987
Q ss_pred cccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCH-HHHhccccEEEeCCC
Q 006411 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE-AARRRLTKRLYIPLP 568 (646)
Q Consensus 490 ~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDp-ALlRRFDr~I~IplP 568 (646)
.+... ......+++.|+..+++......+++||+|||.|+.||+ .+++||+..|.+|.+
T Consensus 139 ------------------~~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 139 ------------------YVPIG--PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp ------------------CBTTT--TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred ------------------cCCCC--hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 22211 123356778888888887655568999999999999999 566699999999876
Q ss_pred CC------------CCcHHHHHHHHHHH
Q 006411 569 SS------------GYSGSDMKNLVKEA 584 (646)
Q Consensus 569 d~------------GySGADL~~Lc~eA 584 (646)
+. +++..++..+++.+
T Consensus 199 ~~r~~i~~i~~~~~~~~~~~~~~l~~~~ 226 (272)
T 1d2n_A 199 ATGEQLLEALELLGNFKDKERTTIAQQV 226 (272)
T ss_dssp EEHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 54 56666666665544
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.23 E-value=3.3e-11 Score=124.39 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.|..+|++|+|.+.+++.+...+.. +. ....+++++||||||+.++...++.+...
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~-~~------~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM-IR------EGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-HH------TTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCcchhhccChHHHHHHHHHHHHH-HH------cCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4566699999999999987665544 11 12245689999999944444445544443
No 36
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.20 E-value=2.8e-12 Score=142.43 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=86.9
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCC--------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPI-------------------------------- 454 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPv-------------------------------- 454 (646)
.+-++|++|++++++.+.+.+.+....... ++..+||+|||+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKSL------KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccC------CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 344678999999999999988775443332 457899999991
Q ss_pred --------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 455 --------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 455 --------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
|.....+..+|..|....| ||||||||.+.. .+.. ...+.||
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~---------------------~~~~--------~~~~~LL 200 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSS---------------------DFRG--------DPSSAML 200 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------------------------CCG
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhh---------------------hhcc--------CHHHHHH
Confidence 2222334456666665666 999999999976 2211 1345677
Q ss_pred HHHcCCCCC------------CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSG------------SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~------------~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..||..... ..+|+||+|||+++.|||+|++||+ .|+|+.|+.
T Consensus 201 ~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 201 EVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp GGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCH
T ss_pred HHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCH
Confidence 777643210 1568999999999999999999995 789999975
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.19 E-value=3.2e-10 Score=116.09 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=93.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
.+..+.+|++|+|.+.+++.|.+.+..... ...++.+|||+|||+.+++..++.+.....
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 345566999999999999999998876432 123567899999996666666666644321
Q ss_pred ----------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-----
Q 006411 470 ----------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS----- 534 (646)
Q Consensus 470 ----------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~----- 534 (646)
...+++|||||||.+.. .+...|+..|+...-
T Consensus 94 ~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------------------~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 94 SGDLAAILTNLSEGDILFIDEIHRLSP---------------------------------AIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp HHHHHHHHHTCCTTCEEEEETGGGCCH---------------------------------HHHHHHHHHHHTSCC-----
T ss_pred hhHHHHHHHhccCCCEEEEechhhcCH---------------------------------HHHHHHHHHHHhccchhhcc
Confidence 13578999999998743 134455555554320
Q ss_pred ----------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 ----------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ----------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+|++|+|||++..+++++++||+..+.|+.|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred cCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 112589999999999999999999999999999964
No 38
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.01 E-value=9.5e-11 Score=144.52 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=89.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccC----------cccccc-----------------CCCCCcc--ccccCCC-
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLR----------PDIFKG-----------------CRSPGKG--LLLFGPP- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~----------pelf~~-----------------~~~PprG--VLLyGPP- 453 (646)
..+.++|+||+|++++|+.+.+.+.+|+.+ ++.|+. .+-+|+| +||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 456799999999999999999999999954 556654 3446788 9999999
Q ss_pred ---------------------------------------------Cch----HHHHHHHHHHHhhhcCCeeeeehhhhHH
Q 006411 454 ---------------------------------------------IGE----GEKLVRALFGVASCRQPAVIFVDEIDSL 484 (646)
Q Consensus 454 ---------------------------------------------vGe----sek~Vr~lF~~Ar~~aPsIIFIDEIDsL 484 (646)
+++ +|+.++.+|..|+..+||+||||+||+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 123 7999999999999999999999999999
Q ss_pred hhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC
Q 006411 485 LSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548 (646)
Q Consensus 485 ~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP 548 (646)
++++ . .++..+ ......|+++++|.+||++.. ..+|+|| +||+.
T Consensus 1173 ~~~~----------------~--~~g~~~~~~~~~~~r~~~q~l~~~~~~~~-~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKA----------------E--IEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHH----------------H--HHSCTTCCCTTHHHHHHHHHHHHHHHHHH-HTTCEEE-EEECE
T ss_pred Cccc----------------c--cccccccccccHHHHHHHHHHHHHHhhhc-cCCeEEE-Eeccc
Confidence 9821 1 121112 224567899999999999876 4578887 78874
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.97 E-value=4.2e-09 Score=106.56 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=118.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH----------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV---------------- 467 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~---------------- 467 (646)
+..+.+|++++|.+.+++.|.+.+..... ...++.+|||+|||+.+++..++.+...
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 34566899999999999999988865321 1234578999999955555555554332
Q ss_pred ------hhh--cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC------
Q 006411 468 ------ASC--RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------ 533 (646)
Q Consensus 468 ------Ar~--~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------ 533 (646)
... ..+.+|||||||.+.. .....|+..|+...
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~---------------------------------~~~~~L~~~l~~~~~~~v~~ 124 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR---------------------------------QAEEHLYPAMEDFVMDIVIG 124 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH---------------------------------HHHHHHHHHHHHSEEEECCS
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc---------------------------------chHHHHHHHHHhhhhHHhcc
Confidence 222 3578999999997743 12233444444321
Q ss_pred --C-------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHh--h
Q 006411 534 --S-------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEAS--M 586 (646)
Q Consensus 534 --~-------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa--~ 586 (646)
. ...++.+|+|||++..+++++++||+..+.+++|+. .++...+..++..+. .
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 204 (324)
T 1hqc_A 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM 204 (324)
T ss_dssp SSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH
T ss_pred ccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Confidence 0 013588999999999999999999999999999864 233333333333220 0
Q ss_pred hHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhC
Q 006411 587 GPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA---SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 587 ~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP---Svs~~dl~~ye~w~k~fg 642 (646)
..+...+..... .........|+.+++..++..+.. +....+...+....+.|+
T Consensus 205 r~l~~~l~~~~~--~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~ 261 (324)
T 1hqc_A 205 RVAKRLFRRVRD--FAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFG 261 (324)
T ss_dssp HHHHHHHHHHTT--TSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH--HHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhc
Confidence 111111110000 001112346888898888876643 234445556666666653
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.95 E-value=2.6e-09 Score=111.50 Aligned_cols=100 Identities=24% Similarity=0.370 Sum_probs=67.4
Q ss_pred cccChHHHHHHHHHHHHhhccCcccc---ccCCCCCccccccCCC--------------------------------Cch
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIF---KGCRSPGKGLLLFGPP--------------------------------IGE 456 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf---~~~~~PprGVLLyGPP--------------------------------vGe 456 (646)
.|+|.+.+++.|...+.......... .....++.+|||+||| +|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999999886544332211 1222467899999999 122
Q ss_pred H-HHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHHHH
Q 006411 457 G-EKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIEM 529 (646)
Q Consensus 457 s-ek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~eL 529 (646)
. +..++.+|..+ ....|+||||||||.+.. .+... +......++.+.||..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~---------------------~~~~~~~~~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR---------------------KSDNPSITRDVSGEGVQQALLKLI 154 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC---------------------CSSCC---CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc---------------------cccccccccccchHHHHHHHHHHh
Confidence 2 44566667665 445689999999999986 33222 12223345899999999
Q ss_pred cCC
Q 006411 530 EGF 532 (646)
Q Consensus 530 DGl 532 (646)
||.
T Consensus 155 eg~ 157 (363)
T 3hws_A 155 EGT 157 (363)
T ss_dssp HCC
T ss_pred cCc
Confidence 964
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.94 E-value=1.8e-08 Score=93.98 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh---------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA--------------- 468 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A--------------- 468 (646)
+.++.+|++++|.+.+++.|.+.+... .+..+||+|||+.++...++.+.+.+
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 356788999999999999998887541 12349999999555555555544332
Q ss_pred ----------------h-----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 469 ----------------S-----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 469 ----------------r-----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
. ...+.||||||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------~~~~~l~~ 124 (226)
T 2chg_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------------------DAQAALRR 124 (226)
T ss_dssp CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------------------------HHHHHHHH
T ss_pred cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------------------------HHHHHHHH
Confidence 0 13577888898887743 12344555
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.++... .++.+|++||.+..+++++++||. .+.++.|+.
T Consensus 125 ~l~~~~---~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~ 163 (226)
T 2chg_A 125 TMEMYS---KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPK 163 (226)
T ss_dssp HHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred HHHhcC---CCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCH
Confidence 555532 468889999999999999999998 788888763
No 42
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.92 E-value=1.1e-08 Score=116.75 Aligned_cols=192 Identities=21% Similarity=0.291 Sum_probs=119.3
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------------------------------
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------------- 453 (646)
-+|++|+|-+..++.+.+.+.. ..+.++||+|||
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 3689999999988888776643 135789999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
.|+.+..++.+|+.+....++||||||||.|++ .+..... ...+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~---------------------~~~~~~~---~~~~--- 303 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---------------------AGAASGG---QVDA--- 303 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---------------------SCCSSSC---HHHH---
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhh---------------------cCCCCcc---hHHH---
Confidence 234566777888888777899999999999987 2221111 1122
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC--------------------CCcHHHHHH
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS--------------------GYSGSDMKN 579 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~--------------------GySGADL~~ 579 (646)
.+.+..+-. ...+.+|+|||.++ .+|+++.|||+ .|.|+.|+. -++...+..
T Consensus 304 -~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~ 380 (758)
T 1r6b_X 304 -ANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRA 380 (758)
T ss_dssp -HHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred -HHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 223333333 45788999999753 68999999998 689999985 133333333
Q ss_pred HHHHHhhh--------HHHHHHHhchhhhhh--cccCCCCccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHh
Q 006411 580 LVKEASMG--------PLREALRQGIEITRL--QKEDMQPVTLQDFENALPQVR----ASVSLNELGIYEEWNKQF 641 (646)
Q Consensus 580 Lc~eAa~~--------Airr~l~~~~~~~~~--~~~~~~~Vt~eDFe~AL~kvr----PSvs~~dl~~ye~w~k~f 641 (646)
++..+... .+...+......... .......|+.+|+..++..+. +.+.+++.+.+....+.+
T Consensus 381 ~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 381 AVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp HHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHH
Confidence 33222110 000111110000011 112245799999999998864 256677777766655544
No 43
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.90 E-value=2.5e-09 Score=97.89 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=80.5
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHH---------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEK--------------------------- 459 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek--------------------------- 459 (646)
+-+|+++.|.+...+.+.+.+.. ..+.++||+|||+.++..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45789999999988888776633 224689999999322222
Q ss_pred ----------------HHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 460 ----------------LVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 460 ----------------~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.++.+|..+... .|+||||||+|.+.. .+....... .+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---------------------~~~~~~~~~---~~~ 141 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG---------------------AGAVAEGAL---DAG 141 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS---------------------SSSSCTTSC---CTH
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc---------------------cccccccch---HHH
Confidence 234444444333 688999999999975 222111111 123
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd 569 (646)
+.|+..++. .+++||++||.+. .+|+++++||+. |++++|+
T Consensus 142 ~~l~~~~~~-----~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 142 NILKPMLAR-----GELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHHHHT-----TCSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred HHHHHHHhc-----CCeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 333334432 4688999999876 699999999995 8999996
No 44
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.89 E-value=2.9e-09 Score=97.13 Aligned_cols=121 Identities=20% Similarity=0.369 Sum_probs=79.9
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHH------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLV------------------------ 461 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~V------------------------ 461 (646)
.+.+|+++.|.++..+.|.+.+.. ..+.++||+|||+.++...+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 456799999999988888877533 22578999999933333333
Q ss_pred -------------------HHHHHHh-hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHH
Q 006411 462 -------------------RALFGVA-SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRL 521 (646)
Q Consensus 462 -------------------r~lF~~A-r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ri 521 (646)
+.+|..+ +...|+||||||+|.+.. .+...... ....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---------------------~~~~~~~~-~~~~~ 142 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---------------------AGKADGAM-DAGNM 142 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------------------------CC-CCHHH
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc---------------------cCcccchH-HHHHH
Confidence 3334333 234588999999999976 22111111 11223
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCC
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd 569 (646)
+..++ + ..++.+|++||.++ .+|+++++||+ .|+++.|+
T Consensus 143 l~~~~---~-----~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~ 186 (195)
T 1jbk_A 143 LKPAL---A-----RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPS 186 (195)
T ss_dssp HHHHH---H-----TTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCC
T ss_pred HHHhh---c-----cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCC
Confidence 33333 2 24678899999987 79999999998 68999986
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.88 E-value=2.7e-08 Score=93.50 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=89.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------- 470 (646)
...+.+|++++|.+.+++.|.+.+.. +..+..+||+|||+.++...++.+......
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 35567899999999999999888754 123468999999966566666665544321
Q ss_pred ----------------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 471 ----------------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 471 ----------------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
..|.||||||+|.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------------------ 140 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------------ 140 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------------------
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------------------
Confidence 1356777777776532
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
...+.|+..++.. ..++.+|++||.+..+++++++|+ ..|+++.|+. .++..++.
T Consensus 141 ---------~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~----~e~~~~l~ 195 (250)
T 1njg_A 141 ---------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV----EQIRHQLE 195 (250)
T ss_dssp ---------HHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH----HHHHHHHH
T ss_pred ---------HHHHHHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCH----HHHHHHHH
Confidence 2456677777754 347899999999999999999996 5778888764 44444443
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.86 E-value=4.2e-08 Score=100.03 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.4
Q ss_pred cEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 538 QILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 538 ~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
+++||+|||..+ .++++|++||+.++.++.|+.
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred ceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCc
Confidence 699999999745 899999999999999999954
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.79 E-value=8.6e-08 Score=91.47 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=78.0
Q ss_pred CCCcccccccCh---HHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----------
Q 006411 405 DPHVRWDDIAGL---EHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC----------- 470 (646)
Q Consensus 405 ~p~VsfdDIgGl---e~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~----------- 470 (646)
.|..+|+++.|- +.+.+.|...+..+ .+.++||+|||+.++...++.+...+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 345789999872 45666666655431 3578999999977777777777665542
Q ss_pred -------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 471 -------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 471 -------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
..|.||||||+|.+.. .. .....|+..++.... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~vliiDe~~~~~~---------------------~~----------~~~~~l~~~l~~~~~-~~ 137 (242)
T 3bos_A 90 IHASISTALLEGLEQFDLICIDDVDAVAG---------------------HP----------LWEEAIFDLYNRVAE-QK 137 (242)
T ss_dssp GGGGSCGGGGTTGGGSSEEEEETGGGGTT---------------------CH----------HHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHhccCCCEEEEeccccccC---------------------CH----------HHHHHHHHHHHHHHH-cC
Confidence 1377889999888754 10 112233333333322 22
Q ss_pred cE-EEEEecCCCC---cCCHHHHhccc--cEEEeCCCCC
Q 006411 538 QI-LLVGATNRPQ---ELDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 538 ~V-lVIaATNrPd---~LDpALlRRFD--r~I~IplPd~ 570 (646)
.+ +|+.++..+. .+++++++||. ..++++.|+.
T Consensus 138 ~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 138 RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMD 176 (242)
T ss_dssp SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCG
T ss_pred CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCH
Confidence 34 5555555554 56799999986 8999999986
No 48
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.78 E-value=5.9e-08 Score=99.31 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=84.1
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH--------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG-------------------- 466 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~-------------------- 466 (646)
....+++.|-+..++.|.+.+...+. ...+..+||||||+.++...++.+..
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34458999999999998886644211 23457899999993333333333322
Q ss_pred -------------------------------------Hhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccc
Q 006411 467 -------------------------------------VASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508 (646)
Q Consensus 467 -------------------------------------~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~ 508 (646)
.+... .|+||||||+|.+.. .
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~---------------------~ 145 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK---------------------R 145 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH---------------------S
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc---------------------c
Confidence 22222 377899999998865 1
Q ss_pred cCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC---CcCCHHHHhcccc-EEEeCCCCC
Q 006411 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP---QELDEAARRRLTK-RLYIPLPSS 570 (646)
Q Consensus 509 R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP---d~LDpALlRRFDr-~I~IplPd~ 570 (646)
+ ....++..|+..++.... ..++.||++||.+ +.+++++++||.. .|.+++|+.
T Consensus 146 ~-------~~~~~l~~l~~~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~ 203 (387)
T 2v1u_A 146 P-------GGQDLLYRITRINQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTA 203 (387)
T ss_dssp T-------THHHHHHHHHHGGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCH
T ss_pred C-------CCChHHHhHhhchhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCH
Confidence 1 123566777777665531 3478999999998 7899999999986 788888763
No 49
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.76 E-value=2.5e-08 Score=101.59 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=85.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL------------------ 464 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l------------------ 464 (646)
.+..+.+|++|+|.+++++.|++++.. +.++..+|++|||+.++...++.+
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~ 86 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKI 86 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCH
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCH
Confidence 345668999999999999999988862 334577889998933333333332
Q ss_pred ------HHH-hhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 465 ------FGV-ASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 465 ------F~~-Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
+.. +... .+.||||||+|.+.. ....+.|+..|+...
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------------------------~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 87 DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------------------------AESQRHLRSFMEAYS 134 (324)
T ss_dssp HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------------------------HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------------------------HHHHHHHHHHHHhCC
Confidence 222 2221 578999999998852 112345566565443
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.++.+|+|||.+..+++++++||. .+.|+.|+
T Consensus 135 ---~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~ 166 (324)
T 3u61_B 135 ---SNCSIIITANNIDGIIKPLQSRCR-VITFGQPT 166 (324)
T ss_dssp ---GGCEEEEEESSGGGSCTTHHHHSE-EEECCCCC
T ss_pred ---CCcEEEEEeCCccccCHHHHhhCc-EEEeCCCC
Confidence 367889999999999999999995 68999987
No 50
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.72 E-value=5.3e-08 Score=105.96 Aligned_cols=125 Identities=24% Similarity=0.338 Sum_probs=84.3
Q ss_pred CCCcccccccChHHHH---HHHHHHHHhhccCccccccCCCCCccccccCCC------------------------CchH
Q 006411 405 DPHVRWDDIAGLEHAK---KCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------IGEG 457 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K---~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------vGes 457 (646)
..+.+|++|+|.++++ ..|...+... . ..++|||||| .+.+
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-----------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~ 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG-----------H-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT-----------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC-----------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 3467899999999999 7777777541 1 2689999999 3334
Q ss_pred HHHHHHHHHHhhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 458 EKLVRALFGVASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 458 ek~Vr~lF~~Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.+.++.+|..|.. ..+.||||||||.+.. . ..+.||..|+.
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------------------~------------~q~~LL~~le~-- 132 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------------------S------------QQDAFLPHIED-- 132 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------------------------CCHHHHHT--
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------------------H------------HHHHHHHHHhc--
Confidence 5567777777653 3689999999998853 1 12345666654
Q ss_pred CCCCcEEEEEec--CCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 534 SGSEQILLVGAT--NRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 534 ~~~~~VlVIaAT--NrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
..|++|++| |....|+++|++|+. .+.++.|+ ..|+..++..+
T Consensus 133 ---~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~----~edi~~il~~~ 177 (447)
T 3pvs_A 133 ---GTITFIGATTENPSFELNSALLSRAR-VYLLKSLS----TEDIEQVLTQA 177 (447)
T ss_dssp ---TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCC----HHHHHHHHHHH
T ss_pred ---CceEEEecCCCCcccccCHHHhCcee-EEeeCCcC----HHHHHHHHHHH
Confidence 246777766 445689999999987 56677775 34555444443
No 51
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.69 E-value=3.4e-08 Score=103.37 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=49.0
Q ss_pred ccccChHHHHHHHHHHHHhhccCccc------------------cccCCCCCccccccCCCCchH---------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDI------------------FKGCRSPGKGLLLFGPPIGEG--------------- 457 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pel------------------f~~~~~PprGVLLyGPPvGes--------------- 457 (646)
++|+|.+.+|+.|...+..++.+... +.....++.++||||||+.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46899999999999988654443321 112334568899999992222
Q ss_pred ------------------HHHHHHHHHHhh----hcCCeeeeehhhhHHhh
Q 006411 458 ------------------EKLVRALFGVAS----CRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 458 ------------------ek~Vr~lF~~Ar----~~aPsIIFIDEIDsL~~ 486 (646)
+..+..+|..+. ...++||||||||.+..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 223444444332 23689999999999976
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.63 E-value=1.3e-07 Score=94.95 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=90.6
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh----------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA---------------------- 468 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A---------------------- 468 (646)
.+|.|.+.+++.|...+....... .....|...+||+|||+.++...++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999998887632110 1112344579999999555555555444332
Q ss_pred ----------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 469 ----------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 469 ----------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.....+||||||||.+.. .+.+.|+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------------------~~~~~Ll 140 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------------------------DVFNILL 140 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------------------------HHHHHHH
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------------------------HHHHHHH
Confidence 122337888888886632 3556677
Q ss_pred HHHcCCCC--------CCCcEEEEEecCC--------------------------CCcCCHHHHhccccEEEeCCCCCCC
Q 006411 527 IEMEGFDS--------GSEQILLVGATNR--------------------------PQELDEAARRRLTKRLYIPLPSSGY 572 (646)
Q Consensus 527 ~eLDGl~~--------~~~~VlVIaATNr--------------------------Pd~LDpALlRRFDr~I~IplPd~Gy 572 (646)
..|+.-.- .-.+++||+|||. ...++++++.||+..+.+++|+
T Consensus 141 ~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~--- 217 (311)
T 4fcw_A 141 QMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT--- 217 (311)
T ss_dssp HHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCC---
T ss_pred HHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCC---
Confidence 77764321 0136889999999 5579999999999999998876
Q ss_pred cHHHHHHHHHHHhh
Q 006411 573 SGSDMKNLVKEASM 586 (646)
Q Consensus 573 SGADL~~Lc~eAa~ 586 (646)
..|+..+++....
T Consensus 218 -~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 218 -KEQIRQIVEIQMS 230 (311)
T ss_dssp -HHHHHHHHHHHTH
T ss_pred -HHHHHHHHHHHHH
Confidence 4677777665443
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.58 E-value=6e-07 Score=91.84 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=77.8
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------------- 470 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------------- 470 (646)
+++|.|.+++++.+...+.. ..++||||||+.++...++.+-.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 47899999999888777654 258999999966666666666443210
Q ss_pred -------------cC---CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-
Q 006411 471 -------------RQ---PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD- 533 (646)
Q Consensus 471 -------------~a---PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~- 533 (646)
.. .+||||||||.+.. .+.+.|+..|+...
T Consensus 92 ~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~---------------------------------~~~~~Ll~~l~~~~~ 138 (331)
T 2r44_A 92 MIYNQHKGNFEVKKGPVFSNFILADEVNRSPA---------------------------------KVQSALLECMQEKQV 138 (331)
T ss_dssp EEEETTTTEEEEEECTTCSSEEEEETGGGSCH---------------------------------HHHHHHHHHHHHSEE
T ss_pred eeecCCCCceEeccCcccccEEEEEccccCCH---------------------------------HHHHHHHHHHhcCce
Confidence 01 15888888886533 23455555555321
Q ss_pred -------CCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 534 -------SGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 -------~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
....+++||+|+|.++ .|++++++||+.++.++.|+.
T Consensus 139 ~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 139 TIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK 187 (331)
T ss_dssp EETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred eeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence 1134678888888433 399999999999999999975
No 54
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.57 E-value=2.7e-07 Score=92.24 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=82.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
.+..+.+|++++|.+.+++.|.+.+.. +..+ .+||||||+.+....++.+.+...
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 456778999999999999988776532 2222 399999995555555555443321
Q ss_pred -----------------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 470 -----------------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 470 -----------------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
...+.||||||+|.+.. ...+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------~~~~~L~ 123 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------------------DAQAALR 123 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------------------------HHHHTTG
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------------------------HHHHHHH
Confidence 02356777777776632 1234455
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|+.. ..++.+|++||.+..+++++++|+. .+.+++|+.
T Consensus 124 ~~le~~---~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~ 163 (319)
T 2chq_A 124 RTMEMY---SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPK 163 (319)
T ss_dssp GGTSSS---SSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCH
T ss_pred HHHHhc---CCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCH
Confidence 555543 3478899999999999999999997 788888864
No 55
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=1.3e-07 Score=104.08 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=85.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHh-hccCccccccCC----CCCccccccCCCCchHHHHHHHHHHHh---------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIW-PLLRPDIFKGCR----SPGKGLLLFGPPIGEGEKLVRALFGVA--------- 468 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~l-PL~~pelf~~~~----~PprGVLLyGPPvGesek~Vr~lF~~A--------- 468 (646)
++..+.+|+||+|.+.+++.|.+++.. +...+..|...+ .+++++||||||+.++...++.+...+
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 356678999999999999999998875 222233444332 256899999999555555555553322
Q ss_pred ----------------------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCC
Q 006411 469 ----------------------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE 514 (646)
Q Consensus 469 ----------------------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~ 514 (646)
....++||||||||.+.. ..
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---------------------~~----- 164 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---------------------GD----- 164 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------TS-----
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------------hh-----
Confidence 114578999999999865 11
Q ss_pred chhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 515 HESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 515 ~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. ..++.|+..++.. ...|++|+++..+..+.+ ++|+...|.|+.|+.
T Consensus 165 ~----~~l~~L~~~l~~~---~~~iIli~~~~~~~~l~~--l~~r~~~i~f~~~~~ 211 (516)
T 1sxj_A 165 R----GGVGQLAQFCRKT---STPLILICNERNLPKMRP--FDRVCLDIQFRRPDA 211 (516)
T ss_dssp T----THHHHHHHHHHHC---SSCEEEEESCTTSSTTGG--GTTTSEEEECCCCCH
T ss_pred H----HHHHHHHHHHHhc---CCCEEEEEcCCCCccchh--hHhceEEEEeCCCCH
Confidence 0 1245555555543 234666666555555553 345566889999975
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=2.3e-07 Score=94.55 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=103.1
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+.+|++|+|.+++++.|...+.. +.+ ..+||||||+.++...++.+......
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKS-----------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 345678999999999999988877643 112 34999999955555555544433211
Q ss_pred -----------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 471 -----------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 471 -----------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
..+.||||||+|.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------------------- 147 (353)
T 1sxj_D 97 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------------- 147 (353)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------------
T ss_pred cccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------------------------
Confidence 1233666677666533
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHH
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKN 579 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~ 579 (646)
...+.|+..|+.... .+.+|++||.+..+++++++|+. .+.++.|+. .++...+..
T Consensus 148 ----~~~~~Ll~~le~~~~---~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~ 219 (353)
T 1sxj_D 148 ----DAQSALRRTMETYSG---VTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLER 219 (353)
T ss_dssp ----HHHHHHHHHHHHTTT---TEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred ----HHHHHHHHHHHhcCC---CceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 234567777766533 56777889999999999999997 778887764 255555555
Q ss_pred HHHHHhhhHHHHHH---HhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 580 LVKEASMGPLREAL---RQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 580 Lc~eAa~~Airr~l---~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
+++.+. .-+++++ ....... ........|+.+|+..++....+
T Consensus 220 l~~~~~-G~~r~~~~~l~~~~~~~-~~~~~~~~It~~~v~~~~~~~~~ 265 (353)
T 1sxj_D 220 ILDISA-GDLRRGITLLQSASKGA-QYLGDGKNITSTQVEELAGVVPH 265 (353)
T ss_dssp HHHHTS-SCHHHHHHHHHHTHHHH-HHHCSCCCCCHHHHHHHHTCCCS
T ss_pred HHHHcC-CCHHHHHHHHHHHHHhc-CCCccCccccHHHHHHHhCCCCH
Confidence 554432 2222221 1110000 00001115888998888775443
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=6.6e-07 Score=89.76 Aligned_cols=119 Identities=24% Similarity=0.228 Sum_probs=83.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+.+|++++|.+++++.|...+.. +.+ ..+||||||+.++...++.+......
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 456778999999999999999987754 122 24999999955555554444433210
Q ss_pred ------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 471 ------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 471 ------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
..+.||||||+|.+.. ...+.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------~~~~~L~ 131 (327)
T 1iqp_A 85 SDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------------DAQQALR 131 (327)
T ss_dssp TCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------------------------HHHHHHH
T ss_pred cccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------------------------HHHHHHH
Confidence 2356777777776532 2345666
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|+... .++.+|++||.+..+++++++|+. .+.|++|+.
T Consensus 132 ~~le~~~---~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~ 171 (327)
T 1iqp_A 132 RTMEMFS---SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRD 171 (327)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCH
T ss_pred HHHHhcC---CCCeEEEEeCCccccCHHHHhhCc-EEEecCCCH
Confidence 6666543 467888999999999999999987 678887753
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.56 E-value=7.2e-07 Score=91.91 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------------ 471 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------------ 471 (646)
.++++|.+..++.|.+.+...+. +..++.+||||||+.++...++.+...+...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 38899999999999988765332 2345799999999555555555554432111
Q ss_pred ------------------------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 472 ------------------------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 472 ------------------------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
.+.||||||+|.+.. ..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~---------------------~~ 149 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK---------------------RR 149 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH---------------------ST
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc---------------------CC
Confidence 123777777777754 11
Q ss_pred CCCCCchhhHHH-HHHHHHHHcCCCCCCCcEEEEEecCCC---CcCCHHHHhccccEEEeCCCCC
Q 006411 510 KSDGEHESSRRL-KTQFLIEMEGFDSGSEQILLVGATNRP---QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~ri-lneLL~eLDGl~~~~~~VlVIaATNrP---d~LDpALlRRFDr~I~IplPd~ 570 (646)
. ..+ +..|+..+ .++.||+|||.+ +.+++++++||...|.|++|+.
T Consensus 150 ---~-----~~~~l~~l~~~~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 150 ---G-----GDIVLYQLLRSD-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp ---T-----SHHHHHHHHTSS-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred ---C-----CceeHHHHhcCC-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 0 112 33333222 479999999998 7899999999988999999864
No 59
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.54 E-value=7.4e-08 Score=82.77 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSL-NELGIYEEWN 638 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~-~dl~~ye~w~ 638 (646)
+.|||||||.++|++|++.|+++. ...|+++||+.|++++.|++.. .....|.+|+
T Consensus 32 t~G~SGADl~~l~~eAa~~a~r~~--------------~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 32 CPNSTGAELRSVCTEAGMFAIRAR--------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHS--------------CSSBCHHHHHHHHHHHTC---------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhc--------------cccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 459999999999999999999872 2569999999999999999865 4578899996
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.53 E-value=8.8e-08 Score=111.41 Aligned_cols=121 Identities=21% Similarity=0.400 Sum_probs=77.8
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+-+|++|+|-++.++.+.+.+.. ..+.++||+|||
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 46789999999888888776532 224679999999
Q ss_pred ----------CchHHHHHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.+..++.+|..+... .|+||||||||.|.+ .+...+. ..+.
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~---------------------~~~~~g~----~~~~ 288 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG---------------------AGKAEGA----VDAG 288 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------------------------
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc---------------------cCCccch----HHHH
Confidence 233455677888888765 799999999999986 2222111 1223
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCC----cCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQ----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd----~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|...++ ...+.+|+|||.++ .+|++++|||+. |+|+.|+.
T Consensus 289 ~~L~~~l~-----~~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~ 334 (854)
T 1qvr_A 289 NMLKPALA-----RGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTV 334 (854)
T ss_dssp ---HHHHH-----TTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCH
T ss_pred HHHHHHHh-----CCCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCH
Confidence 33333342 24678999999875 589999999996 89999975
No 61
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.52 E-value=1.3e-06 Score=89.03 Aligned_cols=126 Identities=15% Similarity=0.227 Sum_probs=85.1
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH-------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG------------------- 466 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~------------------- 466 (646)
|....++++|-+...+.|.+.+...+. ...+..++|+|||+.++...++.+..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 345568999999999988876644221 23457899999994444444333332
Q ss_pred -----------------------------------Hhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 467 -----------------------------------VASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 467 -----------------------------------~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
.+... .|+||||||+|.+.. ...
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~---------------------~~~ 145 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK---------------------KYN 145 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH---------------------SSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc---------------------cCc
Confidence 22222 288999999998875 110
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC---CcCCHHHHhccc-cEEEeCCCCC
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP---QELDEAARRRLT-KRLYIPLPSS 570 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP---d~LDpALlRRFD-r~I~IplPd~ 570 (646)
..++..|+..++.+. ..++.+|++||.+ ..+++++++||. +.|.+++++.
T Consensus 146 --------~~~l~~l~~~~~~~~--~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 146 --------DDILYKLSRINSEVN--KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp --------STHHHHHHHHHHSCC--C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred --------CHHHHHHhhchhhcC--CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCH
Confidence 125677777787762 3578999999988 578999999886 4899998864
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.52 E-value=5.9e-07 Score=97.20 Aligned_cols=124 Identities=13% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCccccccc-C--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh------------
Q 006411 404 RDPHVRWDDIA-G--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA------------ 468 (646)
Q Consensus 404 ~~p~VsfdDIg-G--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A------------ 468 (646)
..|..+|++++ | -..+...+...+..| +. +..+||||||+.++...++.+....
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 45678999987 5 333445555444332 11 4689999999555544444443322
Q ss_pred ------------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 469 ------------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 469 ------------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
....|.||||||||.+.. ++ .....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------------------~~----------~~q~~ 215 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------------------KT----------GVQTE 215 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------------------CH----------HHHHH
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------------------Ch----------HHHHH
Confidence 111688999999998864 11 11233
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhccc--cEEEeCCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFD--r~I~IplPd~ 570 (646)
|+..++.+.. .+..+||+|++.|.. +++++++||. ..+.+++|+.
T Consensus 216 l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 216 LFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp HHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred HHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 4444433323 234556655555665 8999999997 7889999975
No 63
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.50 E-value=6e-07 Score=102.85 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=91.4
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh----------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA---------------------- 468 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A---------------------- 468 (646)
++|+|.+.+++.|.+.+....... .....|...+||+|||+.+++...+.+-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 468899999999988887632110 0011233369999999666655555554432
Q ss_pred --------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-------
Q 006411 469 --------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------- 533 (646)
Q Consensus 469 --------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------- 533 (646)
+...++||||||||.+-. .+.+.||..||.-.
T Consensus 568 ~~~l~~~~~~~~~~vl~lDEi~~~~~---------------------------------~~~~~Ll~~le~g~~~~~~g~ 614 (758)
T 3pxi_A 568 GGQLTEKVRRKPYSVVLLDAIEKAHP---------------------------------DVFNILLQVLEDGRLTDSKGR 614 (758)
T ss_dssp ---CHHHHHHCSSSEEEEECGGGSCH---------------------------------HHHHHHHHHHHHSBCC-----
T ss_pred cchhhHHHHhCCCeEEEEeCccccCH---------------------------------HHHHHHHHHhccCeEEcCCCC
Confidence 334568999999997632 35677777777521
Q ss_pred -CCCCcEEEEEecCCCCc------------CCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 534 -SGSEQILLVGATNRPQE------------LDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 534 -~~~~~VlVIaATNrPd~------------LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
....+++||+|||.+.. ++|+++.|||..|.|++|+. .|+..+++....
T Consensus 615 ~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~----~~~~~i~~~~l~ 676 (758)
T 3pxi_A 615 TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEK----KHLTEIVSLMSD 676 (758)
T ss_dssp CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CH----HHHHHHHHHHHH
T ss_pred EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCH----HHHHHHHHHHHH
Confidence 01246899999998765 89999999999999999864 777777765543
No 64
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.48 E-value=6e-08 Score=81.74 Aligned_cols=52 Identities=29% Similarity=0.394 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHH
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYE 635 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye 635 (646)
+.|||||||.++|++|++.|+++. ..+|+++||+.|+.+++|+++ ++++.|+
T Consensus 32 t~G~SGADi~~l~~eA~~~a~~~~--------------~~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 32 PDKISGADINSICQESGMLAVREN--------------RYIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp SCCCCHHHHHHHHHHHHHGGGTSC--------------CSSBCHHHHHHHHHHHCC-----------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc--------------cCCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 459999999999999999998752 367999999999999999999 8887774
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.47 E-value=7.6e-07 Score=101.70 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=85.9
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH---------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL--------------------------- 464 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l--------------------------- 464 (646)
+|.|.+++++.|...+...... ......|...+||+|||+.++....+.+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 4677788888777766542110 0011234457999999944444433333
Q ss_pred --------------HHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 465 --------------FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 465 --------------F~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
+...+...++||||||||.+-. .+.+.|+..||
T Consensus 536 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~---------------------------------~~~~~Ll~~le 582 (758)
T 1r6b_X 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------------------DVFNILLQVMD 582 (758)
T ss_dssp CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH---------------------------------HHHHHHHHHHH
T ss_pred CCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH---------------------------------HHHHHHHHHhc
Confidence 2333344568999999997632 36778888887
Q ss_pred CCCC--------CCCcEEEEEecCCCC-------------------------cCCHHHHhccccEEEeCCCCCCCcHHHH
Q 006411 531 GFDS--------GSEQILLVGATNRPQ-------------------------ELDEAARRRLTKRLYIPLPSSGYSGSDM 577 (646)
Q Consensus 531 Gl~~--------~~~~VlVIaATNrPd-------------------------~LDpALlRRFDr~I~IplPd~GySGADL 577 (646)
.-.- .-.+++||+|||.+. .++|+++.|||..|.|++|+. .|+
T Consensus 583 ~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~----~~~ 658 (758)
T 1r6b_X 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLST----DVI 658 (758)
T ss_dssp HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCH----HHH
T ss_pred CcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCH----HHH
Confidence 4210 014689999999865 789999999999999999875 555
Q ss_pred HHHHHH
Q 006411 578 KNLVKE 583 (646)
Q Consensus 578 ~~Lc~e 583 (646)
..+++.
T Consensus 659 ~~i~~~ 664 (758)
T 1r6b_X 659 HQVVDK 664 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 66
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.46 E-value=1.9e-06 Score=88.42 Aligned_cols=119 Identities=19% Similarity=0.199 Sum_probs=84.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------ 471 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------ 471 (646)
+..+.+|++++|.+.+++.|...+.. +..+..+||||||+.++...++.+.....+.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 45567899999999999999988753 2234679999999666666666554443221
Q ss_pred -----------------------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 472 -----------------------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 472 -----------------------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
.+.||||||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------------- 132 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 132 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------------------
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------------------
Confidence 13455555555442
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....+.|+..++... ..+++|++|+.+..+++++++|+ ..+.++.|+.
T Consensus 133 --------~~~~~~Ll~~le~~~---~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~ 180 (373)
T 1jr3_A 133 --------RHSFNALLKTLEEPP---EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180 (373)
T ss_dssp --------HHHHHHHHHHHHSCC---SSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH
T ss_pred --------HHHHHHHHHHHhcCC---CceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCH
Confidence 234577788887643 47889999999999999999998 6788888764
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1.5e-06 Score=87.01 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH----------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV---------------- 467 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~---------------- 467 (646)
+..+.+|++++|.+.+++.|.+.+.. +.++. +||||||+.+....++.+.+.
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 45567899999999999999888643 22334 999999944444444433332
Q ss_pred --------------hh-------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 468 --------------AS-------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 468 --------------Ar-------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
+. ...+.||||||+|.+.. ...+.|+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------------~~~~~L~ 128 (323)
T 1sxj_B 82 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------------------------GAQQALR 128 (323)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------------------HHHHTTH
T ss_pred cccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------------------------HHHHHHH
Confidence 21 11256777777776532 1244566
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..++... .++.+|++||.+..+++++++|+. .+.++.|+.
T Consensus 129 ~~le~~~---~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~ 168 (323)
T 1sxj_B 129 RTMELYS---NSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSD 168 (323)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred HHHhccC---CCceEEEEeCChhhchhHHHhhce-EEeecCCCH
Confidence 6665532 467888899999999999999986 788988875
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.44 E-value=1.3e-05 Score=82.95 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=112.5
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh-----------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA----------------- 468 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A----------------- 468 (646)
..-+|+++.|.+.+++.|...+..-.. .+.++..++|||||+.++...++.+....
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 345889999999888888776654211 12355789999999666666666655443
Q ss_pred ------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---------
Q 006411 469 ------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD--------- 533 (646)
Q Consensus 469 ------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~--------- 533 (646)
....+.|+||||++.+... +...|+..|....
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~~---------------------------------~~e~L~~~~~~~~~~i~~~~~~ 139 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNKA---------------------------------VEELLYSAIEDFQIDIMIGKGP 139 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCHH---------------------------------HHHHHHHHHHTSCCCC------
T ss_pred HHHHHHHccCCCEEEEcchhhcCHH---------------------------------HHHHHHHHHHhcccceeeccCc
Confidence 0124679999999987531 0111111111110
Q ss_pred ------CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhh--HH
Q 006411 534 ------SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMG--PL 589 (646)
Q Consensus 534 ------~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~--Ai 589 (646)
..-..+.++++|+++..|++.+++||...+.+++|+. .++...+..+++.+.-. .+
T Consensus 140 ~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 140 SAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp ---------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHH
T ss_pred ccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHH
Confidence 0013467788999999999999999988888998864 12222233332221100 00
Q ss_pred HHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhC
Q 006411 590 REALRQGIEITRLQKEDMQPVTLQDFENALPQVRA---SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 590 rr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP---Svs~~dl~~ye~w~k~fg 642 (646)
...+...... ........|+.+++..|+..+.. ..+..+...+..+.+.|+
T Consensus 220 ~~ll~~~~~~--a~~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (334)
T 1in4_A 220 IRLTKRVRDM--LTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR 273 (334)
T ss_dssp HHHHHHHHHH--HHHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHH--HHHcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhC
Confidence 0011100000 01112356899999999988753 233455566777777774
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.44 E-value=2.5e-07 Score=106.04 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCc------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIG------------------------------ 455 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvG------------------------------ 455 (646)
..-++++|+|.+..++.|.+.+.. ....++||||||+.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 445789999999999998887643 12467999999922
Q ss_pred --------hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 456 --------EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 456 --------esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
+.+..++.+|+.+....|+||||| .. . ...+.|+.
T Consensus 243 ~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~----------------------~----------~~~~~L~~ 285 (758)
T 3pxi_A 243 DMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------------------I----------DASNILKP 285 (758)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------CC
T ss_pred cccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc----------------------h----------hHHHHHHH
Confidence 223356777777777788888888 21 0 01122222
Q ss_pred HHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
.|+ ...|.||+|||.++ .+|++++||| ..|.|+.|+.
T Consensus 286 ~l~-----~~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~ 327 (758)
T 3pxi_A 286 SLA-----RGELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSV 327 (758)
T ss_dssp CTT-----SSSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCH
T ss_pred HHh-----cCCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCH
Confidence 222 34689999999998 7999999999 4599999974
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.42 E-value=4.3e-07 Score=98.91 Aligned_cols=111 Identities=17% Similarity=0.239 Sum_probs=74.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHH-------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEK------------------------- 459 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek------------------------- 459 (646)
..+-++++|+|-+..++.|.+.+.. ....++||+|||+.++..
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 3456789999999999988877643 124678999999333333
Q ss_pred -------------HHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 460 -------------LVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 460 -------------~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.++.+|+.+....|+||||| +. . ...+.|+
T Consensus 242 l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~----------------------~----------~a~~~L~ 284 (468)
T 3pxg_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------------------I----------DASNILK 284 (468)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------C
T ss_pred eeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc----------------------h----------hHHHHHH
Confidence 34455555655566777776 11 0 0112222
Q ss_pred HHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
..| . ...+.||+|||.+. .+|++++|||.. |.|+.|+.
T Consensus 285 ~~L----~-~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~ 327 (468)
T 3pxg_A 285 PSL----A-RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSV 327 (468)
T ss_dssp CCT----T-SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCH
T ss_pred Hhh----c-CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCH
Confidence 222 1 34699999999998 799999999985 99999974
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=4.8e-06 Score=85.55 Aligned_cols=156 Identities=12% Similarity=0.122 Sum_probs=83.4
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCc--cccccCCCCchHHHHHHHHHHHhhhc-CCeeeeehhhh-
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK--GLLLFGPPIGEGEKLVRALFGVASCR-QPAVIFVDEID- 482 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~Ppr--GVLLyGPPvGesek~Vr~lF~~Ar~~-aPsIIFIDEID- 482 (646)
...++++.|-+..++.|.+.+...+.. ..+. .++|+|||+.++...++.+....... ...+++++--+
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 344589999999999998887653321 1223 89999999777777777777665443 23344443110
Q ss_pred ----HHhhhccccccc-------chhhhhhh-h-hhccccCC-----CCCchhhHHHHHHHHHHHcCCCC-CCCcEEEEE
Q 006411 483 ----SLLSQMLPYMHV-------HHIKLFCL-K-RFYFQRKS-----DGEHESSRRLKTQFLIEMEGFDS-GSEQILLVG 543 (646)
Q Consensus 483 ----sL~~k~~~~~~~-------~~~~~~~~-k-r~~~~R~s-----~~~~e~s~rilneLL~eLDGl~~-~~~~VlVIa 543 (646)
.++......++. ....++.. . ........ +.-+.....++..|+..++.+.. ...++.||+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 111000000000 00000000 0 00000000 00011123456666666654431 014789999
Q ss_pred ecCCC---CcCCHHHHhcccc-EEEeCCCCC
Q 006411 544 ATNRP---QELDEAARRRLTK-RLYIPLPSS 570 (646)
Q Consensus 544 ATNrP---d~LDpALlRRFDr-~I~IplPd~ 570 (646)
+||.+ +.+++.+++||.. .|.+++++.
T Consensus 165 ~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 165 VGHNDAVLNNLDPSTRGIMGKYVIRFSPYTK 195 (389)
T ss_dssp EESSTHHHHTSCHHHHHHHTTCEEECCCCBH
T ss_pred EECCchHHHHhCHHhhhcCCCceEEeCCCCH
Confidence 99998 7899999999886 788888764
No 72
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.25 E-value=6.7e-07 Score=75.54 Aligned_cols=53 Identities=17% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc-CCCCCHHHHHHHH
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV-RASVSLNELGIYE 635 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv-rPSvs~~dl~~ye 635 (646)
+.|||||||.++|++|++.|+++. ...|+++||+.|+.++ .|+++.++++.|.
T Consensus 29 t~G~SGADi~~l~~eAa~~ai~~~--------------~~~i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 29 NDSLSGAVIAAIMQEAGLRAVRKN--------------RYVILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTT--------------CSEECHHHHHHHHHTTCC------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc--------------cCCcCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 349999999999999999999861 2569999999999998 5888888887763
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=2.2e-05 Score=80.99 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------- 470 (646)
+..+.+|+++.|.+.+++.|...+.. +..+. +||||||+.++...++.+-.....
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 45677899999999999998887753 22233 999999955555555444332210
Q ss_pred -----------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 471 -----------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 471 -----------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
..+.|++|||+|.+.. ...+.|+.
T Consensus 86 ~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------------~~~~~L~~ 132 (340)
T 1sxj_C 86 DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------------------------AAQNALRR 132 (340)
T ss_dssp SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------------------------HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------------------------HHHHHHHH
Confidence 1256777888776632 12456666
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.|+... ..+.+|++||.+..+.+++++|+. .+.++.++
T Consensus 133 ~le~~~---~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~ 170 (340)
T 1sxj_C 133 VIERYT---KNTRFCVLANYAHKLTPALLSQCT-RFRFQPLP 170 (340)
T ss_dssp HHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred HHhcCC---CCeEEEEEecCccccchhHHhhce-eEeccCCC
Confidence 676543 356778889999999999999987 56776654
No 74
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.19 E-value=9.3e-06 Score=82.89 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=76.8
Q ss_pred CCCccccccc-C--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh------------
Q 006411 405 DPHVRWDDIA-G--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------ 469 (646)
Q Consensus 405 ~p~VsfdDIg-G--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------ 469 (646)
.|..+|++++ | ...+...++..+..|- ..+.++||||||+.++...++.+...+.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 5678899997 4 4455566666555431 2357899999995555555555443321
Q ss_pred ---------------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 470 ---------------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 470 ---------------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
...+.||||||||.+.. .+ .....|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~---------------------~~----------~~~~~l~~~ 123 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG---------------------KE----------RTQIEFFHI 123 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT---------------------CH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC---------------------Ch----------HHHHHHHHH
Confidence 11378999999998754 11 112233333
Q ss_pred HcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc--cEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD--r~I~IplPd~ 570 (646)
++.+.. ...++||++++.|. .+++++++||+ ..+.+++ +.
T Consensus 124 l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~ 168 (324)
T 1l8q_A 124 FNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DN 168 (324)
T ss_dssp HHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CH
T ss_pred HHHHHH-CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CH
Confidence 333222 23467778887777 68999999997 5677777 53
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.18 E-value=1e-05 Score=89.45 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=72.9
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh--------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-------------------- 470 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-------------------- 470 (646)
..|.|.+++++.+...+.. ...|||+|||+.++...++.+-..+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4688999998887666543 358999999955444444444322210
Q ss_pred -----------------c---CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 471 -----------------R---QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 471 -----------------~---aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
. .++|||||||+.+- ..+.+.|+..|+
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~---------------------------------~~~q~~LL~~le 134 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG---------------------------------PAILNTLLTAIN 134 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC---------------------------------HHHHHHHHHHHH
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc---------------------------------HHHHHHHHHHHH
Confidence 0 34577888876442 235677777775
Q ss_pred C-------CCCCCCcEEEEEecCCCCc---CCHHHHhccccEEEeCCCCC
Q 006411 531 G-------FDSGSEQILLVGATNRPQE---LDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 G-------l~~~~~~VlVIaATNrPd~---LDpALlRRFDr~I~IplPd~ 570 (646)
. .....+..++|+|||.+.. +.+|+++||..+|++|.|+.
T Consensus 135 e~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~ 184 (500)
T 3nbx_X 135 ERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQD 184 (500)
T ss_dssp SSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCC
T ss_pred HHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 2 2111122356788886433 55799999999999999976
No 76
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.17 E-value=4.7e-06 Score=87.34 Aligned_cols=92 Identities=5% Similarity=0.121 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHh--hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 457 GEKLVRALFGVA--SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 457 sek~Vr~lF~~A--r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
....++.+|..+ ....++||||||||.|.. +.++..|+.... ..
T Consensus 115 ~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~--------------------------------q~~L~~l~~~~~-~~- 160 (318)
T 3te6_A 115 SLEALNFYITNVPKAKKRKTLILIQNPENLLS--------------------------------EKILQYFEKWIS-SK- 160 (318)
T ss_dssp CHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC--------------------------------THHHHHHHHHHH-CS-
T ss_pred HHHHHHHHHHHhhhccCCceEEEEecHHHhhc--------------------------------chHHHHHHhccc-cc-
Confidence 445566667664 345678999999997732 235566665433 22
Q ss_pred CCCcEEEEEecCCCCcCC----HHHHhccc-cEEEeCCCCCCCcHHHHHHHHHHHhhh
Q 006411 535 GSEQILLVGATNRPQELD----EAARRRLT-KRLYIPLPSSGYSGSDMKNLVKEASMG 587 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LD----pALlRRFD-r~I~IplPd~GySGADL~~Lc~eAa~~ 587 (646)
..+++||+++|..+..+ +++++||. .+|.|++ |+..+|..+++..+..
T Consensus 161 -~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~p----Yt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 -NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNK----VDKNELQQMIITRLKS 213 (318)
T ss_dssp -SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCC----CCHHHHHHHHHHHHHH
T ss_pred -CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCC----CCHHHHHHHHHHHHHh
Confidence 35799999999987644 44566997 5777765 7889999999877643
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=7.9e-06 Score=83.67 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.|+..|+.... ++.+|.+||.++.+.+++++|+ .++.|++|+.
T Consensus 150 ~~~~L~~~le~~~~---~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~ 195 (354)
T 1sxj_E 150 AQAALRRTMEKYSK---NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSD 195 (354)
T ss_dssp HHHHHHHHHHHSTT---TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCH
T ss_pred HHHHHHHHHHhhcC---CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCH
Confidence 45667777766533 5788999999999999999999 7789998875
No 78
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.10 E-value=8.2e-06 Score=91.48 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=37.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG 466 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~ 466 (646)
...++..|+++.|.+.+++.|...+.. ...+||+|||+.++...++.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhc
Confidence 356678899999999999888777653 35899999996666666665544
No 79
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.09 E-value=1.3e-05 Score=79.39 Aligned_cols=135 Identities=19% Similarity=0.130 Sum_probs=76.9
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh----------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC---------------- 470 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~---------------- 470 (646)
+.+|++|+|.+...+.+.+.+..... .+..|||+|||+.+++...+.+......
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp --------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CcccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 35789999999998888887765321 2368999999955555555555443221
Q ss_pred ---------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 471 ---------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 471 ---------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
..+.+|||||||.+.. .+..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~---------------------------------~~q~ 118 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM---------------------------------MVQE 118 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH---------------------------------HHHH
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH---------------------------------HHHH
Confidence 1245666777665532 2344
Q ss_pred HHHHHHcCCC--------CCCCcEEEEEecCCC-------CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 524 QFLIEMEGFD--------SGSEQILLVGATNRP-------QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 524 eLL~eLDGl~--------~~~~~VlVIaATNrP-------d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
.|+..|+.-. ....++.||+|||.+ ..++++++.||.. +.+.+|.----..|+..+++...
T Consensus 119 ~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 119 KLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp HHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHH
Confidence 5555555310 012358899999985 2478999999974 33444433223467877765443
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.03 E-value=1.2e-06 Score=98.49 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=86.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCcccccc-CCCCCccccccCCCCchHHHHHHHHHHHhh--------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKG-CRSPGKGLLLFGPPIGEGEKLVRALFGVAS-------------------- 469 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~-~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-------------------- 469 (646)
..|.|.+++|+.|.-.+.. ..+..... .......|||+|||+.++...++.+-..+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 4689999988776322211 11111111 112234799999995555555555433221
Q ss_pred ----------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 470 ----------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 470 ----------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.....|+||||||.+-. .+.+.|+..|+.-.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~---------------------------------~~q~~Ll~~le~~~ 419 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKMRD---------------------------------EDRVAIHEAMEQQT 419 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS---------------------------------HHHHHHHHHHHSSS
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhCCH---------------------------------hHhhhhHHHHhCCE
Confidence 00147999999997643 13455666665321
Q ss_pred ---------C-CCCcEEEEEecCCCC-------------cCCHHHHhcccc-EEEeCCCC--------------------
Q 006411 534 ---------S-GSEQILLVGATNRPQ-------------ELDEAARRRLTK-RLYIPLPS-------------------- 569 (646)
Q Consensus 534 ---------~-~~~~VlVIaATNrPd-------------~LDpALlRRFDr-~I~IplPd-------------------- 569 (646)
. ...++.||+|||.++ .|++|+++|||. .+..+.|+
T Consensus 420 i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~ 499 (595)
T 3f9v_A 420 VSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTK 499 (595)
T ss_dssp EEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSS
T ss_pred EEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccc
Confidence 1 134688999999987 999999999984 55566664
Q ss_pred CCCcHHHHHHHHHHHh
Q 006411 570 SGYSGSDMKNLVKEAS 585 (646)
Q Consensus 570 ~GySGADL~~Lc~eAa 585 (646)
..++..+|+.+|..|.
T Consensus 500 ~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 500 NIIDIDTLRKYIAYAR 515 (595)
T ss_dssp STTCCTTTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 1567778888776554
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.92 E-value=5.1e-05 Score=88.30 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=91.5
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh---------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA--------------------- 468 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A--------------------- 468 (646)
|++|+|.+.+++.|.+.+...... ......|...+||+|||+.+++...+.+-...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999998888652210 00012344689999999554544444443332
Q ss_pred -----------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 469 -----------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 469 -----------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
+...++||||||||.+- ..+.+.|
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~---------------------------------~~~~~~L 680 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH---------------------------------PDVFNIL 680 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC---------------------------------HHHHHHH
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC---------------------------------HHHHHHH
Confidence 22335788888887652 2467888
Q ss_pred HHHHcCCC--C------CCCcEEEEEecCCC--------------------------CcCCHHHHhccccEEEeCCCCCC
Q 006411 526 LIEMEGFD--S------GSEQILLVGATNRP--------------------------QELDEAARRRLTKRLYIPLPSSG 571 (646)
Q Consensus 526 L~eLDGl~--~------~~~~VlVIaATNrP--------------------------d~LDpALlRRFDr~I~IplPd~G 571 (646)
|..||.-. . .-.+++||+|||.+ ..+.|+|+.||+..+.+++|+
T Consensus 681 l~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~-- 758 (854)
T 1qvr_A 681 LQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT-- 758 (854)
T ss_dssp HHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCC--
T ss_pred HHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCC--
Confidence 88888432 0 01368999999973 346788889999888887764
Q ss_pred CcHHHHHHHHHHHhhhH
Q 006411 572 YSGSDMKNLVKEASMGP 588 (646)
Q Consensus 572 ySGADL~~Lc~eAa~~A 588 (646)
..||..|++......
T Consensus 759 --~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 759 --KEQIRQIVEIQLSYL 773 (854)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 789998887655433
No 82
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.91 E-value=5.7e-06 Score=70.97 Aligned_cols=43 Identities=40% Similarity=0.499 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
+.|||||||.+||++|++.|+++. ..+|+++||+.|+++++|.
T Consensus 42 T~G~SGADL~~l~~eAa~~alr~~--------------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 42 MPGASGAEVKGVCTEAGMYALRER--------------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTT--------------CSEECHHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHccC
Confidence 459999999999999999999862 3679999999999999885
No 83
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.88 E-value=8.4e-06 Score=67.83 Aligned_cols=41 Identities=41% Similarity=0.536 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 570 SGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 570 ~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
.||||+||.++|++|++.|+++ ....|+++||+.|+.++..
T Consensus 35 ~G~SGADi~~l~~eA~~~a~~~--------------~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 35 PGASGAEVKGVCTEAGMYALRE--------------RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT--------------TCSEECHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHh--------------CCCCCCHHHHHHHHHHHHh
Confidence 3999999999999999999986 2357999999999998754
No 84
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.77 E-value=0.00023 Score=73.72 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.||..|+.. ..++++|.+||.|+.|.|++++|+. ++.|+.|+.
T Consensus 123 ~a~naLLk~lEep---~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~ 169 (334)
T 1a5t_A 123 AAANALLKTLEEP---PAETWFFLATREPERLLATLRSRCR-LHYLAPPPE 169 (334)
T ss_dssp HHHHHHHHHHTSC---CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred HHHHHHHHHhcCC---CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCH
Confidence 4568889888764 3478888999999999999999985 688988875
No 85
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=3.6e-05 Score=70.10 Aligned_cols=110 Identities=9% Similarity=0.029 Sum_probs=69.1
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh----------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS---------------------- 469 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar---------------------- 469 (646)
+|+|-....+.+.+.+..-. .....|||+|||+.+++...+.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~ 71 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDF 71 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcH
Confidence 57787778888877775521 1235699999996666666666655431
Q ss_pred --hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCC
Q 006411 470 --CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547 (646)
Q Consensus 470 --~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNr 547 (646)
.....+|||||||.+-. .+...|+..|... ..++.||+|||+
T Consensus 72 ~~~a~~g~l~ldei~~l~~---------------------------------~~q~~Ll~~l~~~---~~~~~~I~~t~~ 115 (145)
T 3n70_A 72 IALAQGGTLVLSHPEHLTR---------------------------------EQQYHLVQLQSQE---HRPFRLIGIGDT 115 (145)
T ss_dssp HHHHTTSCEEEECGGGSCH---------------------------------HHHHHHHHHHHSS---SCSSCEEEEESS
T ss_pred HHHcCCcEEEEcChHHCCH---------------------------------HHHHHHHHHHhhc---CCCEEEEEECCc
Confidence 12457899999998743 1234455555433 336788999998
Q ss_pred CC-------cCCHHHHhcccc-EEEeCC
Q 006411 548 PQ-------ELDEAARRRLTK-RLYIPL 567 (646)
Q Consensus 548 Pd-------~LDpALlRRFDr-~I~Ipl 567 (646)
+- .+++.+..||.. .|.+|+
T Consensus 116 ~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 116 SLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred CHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 53 466666666543 455554
No 86
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.74 E-value=0.00014 Score=74.72 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=33.0
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
++|+|.....+.+.+.+.... ..+..|||+|||+.+++...+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 467888888888888776522 23468999999966666666666553
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.70 E-value=9.4e-05 Score=95.51 Aligned_cols=72 Identities=32% Similarity=0.467 Sum_probs=49.6
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC-------CcEEEEEec
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS-------EQILLVGAT 545 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~-------~~VlVIaAT 545 (646)
++||||||||.... .+ -+ .+....++.+++ +..|+.... .+|.+||||
T Consensus 1337 ~~VlFiDEinmp~~---------------------d~--yg-~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~ 1391 (2695)
T 4akg_A 1337 NLVLFCDEINLPKL---------------------DK--YG-SQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGAC 1391 (2695)
T ss_dssp CEEEEEETTTCSCC---------------------CS--SS-CCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEE
T ss_pred eEEEEecccccccc---------------------cc--cC-chhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEec
Confidence 47999999996432 11 11 223345566655 333432211 358999999
Q ss_pred CCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 546 NRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 546 NrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
|.|. .||++++||| ..|+++.|+.
T Consensus 1392 Npp~~gGR~~l~~rllRrf-~vi~i~~P~~ 1420 (2695)
T 4akg_A 1392 NPPTDPGRIPMSERFTRHA-AILYLGYPSG 1420 (2695)
T ss_dssp CCTTSTTCCCCCHHHHTTE-EEEECCCCTT
T ss_pred CCCccCCCccCChhhhhee-eEEEeCCCCH
Confidence 9995 8999999999 8899999986
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.60 E-value=0.00064 Score=70.40 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCCCC--CcEEEEEecCCCC---cCC---HHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGS--EQILLVGATNRPQ---ELD---EAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~--~~VlVIaATNrPd---~LD---pALlRRFDr~I~IplPd~ 570 (646)
.++..|+..++.+.... .++.||++||.++ .++ +.+.++|..++.+++++.
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 159 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 34555555555443112 5799999998776 345 667778877788877653
No 89
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.59 E-value=4.2e-05 Score=69.64 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=64.2
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHH-----------------------HHHHHHh
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLV-----------------------RALFGVA 468 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~V-----------------------r~lF~~A 468 (646)
+++|.+.+.+.+.+.+.... ..+..|||+|||+.+++... ..+|+.|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a 74 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKA 74 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHT
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhC
Confidence 57788888888888876532 12367999999944444333 3344444
Q ss_pred hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC
Q 006411 469 SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548 (646)
Q Consensus 469 r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP 548 (646)
.+.+|||||||.+.. . ....|+..|+.-. ..++.||+|||++
T Consensus 75 ---~~~~l~lDei~~l~~---------------------~------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 ---EGGVLYVGDIAQYSR---------------------N------------IQTGITFIIGKAE--RCRVRVIASCSYA 116 (143)
T ss_dssp ---TTSEEEEEECTTCCH---------------------H------------HHHHHHHHHHHHT--TTTCEEEEEEEEC
T ss_pred ---CCCeEEEeChHHCCH---------------------H------------HHHHHHHHHHhCC--CCCEEEEEecCCC
Confidence 367999999998854 1 1223333343322 2457889999975
Q ss_pred -Cc----CCHHHHhccc-cEEEeCC
Q 006411 549 -QE----LDEAARRRLT-KRLYIPL 567 (646)
Q Consensus 549 -d~----LDpALlRRFD-r~I~Ipl 567 (646)
.. +++.+..||. ..|.+|+
T Consensus 117 ~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 117 AGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp TTTC--CHHHHHHHHSSSEEEEECC
T ss_pred HHHHHhCccHHHHHHhcCcEEeCCC
Confidence 33 4455555754 4566664
No 90
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=0.00036 Score=72.19 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.||..|+... +.+++|.+|+.|..|-|++++| .+.|++|+.
T Consensus 97 ~a~naLLk~LEep~---~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~ 141 (305)
T 2gno_A 97 QAANAFLKALEEPP---EYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVP 141 (305)
T ss_dssp HHHHHTHHHHHSCC---TTEEEEEEESCGGGSCHHHHTT---SEEEECCCC
T ss_pred HHHHHHHHHHhCCC---CCeEEEEEECChHhChHHHHce---eEeCCCCCH
Confidence 45688999998643 4678888888999999999999 788988876
No 91
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.19 E-value=0.0027 Score=69.40 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=62.6
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.-..+...+...+.|.. ..|+|+||||.|+. +..+.+..-....+...||..||+-.
T Consensus 234 l~~~~~~~~~ai~~ae~--~~il~~DEidki~~---------------------~~~~~~~D~s~egvq~aLL~~le~~~ 290 (444)
T 1g41_A 234 LINPEELKQKAIDAVEQ--NGIVFIDEIDKICK---------------------KGEYSGADVSREGVQRDLLPLVEGST 290 (444)
T ss_dssp SCCHHHHHHHHHHHHHH--HCEEEEETGGGGSC---------------------CSSCSSSHHHHHHHHHHHHHHHHCCE
T ss_pred ccCHHHHHHHHHHHhcc--CCeeeHHHHHHHhh---------------------ccCCCCCCchHHHHHHHHHHHhcccc
Confidence 34455566666666533 25899999999986 22111112122347788999999842
Q ss_pred C-------CCCcEEEEEec----CCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 S-------GSEQILLVGAT----NRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~-------~~~~VlVIaAT----NrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. ...+|++|+|. +.|.++-|.|+.||+.+|.++..+.
T Consensus 291 ~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~lt~ 338 (444)
T 1g41_A 291 VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA 338 (444)
T ss_dssp EEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred cccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCCCCH
Confidence 1 14679999987 3566667999999999999987653
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.72 E-value=0.0057 Score=56.77 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCCCcccccccC----hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 404 RDPHVRWDDIAG----LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 404 ~~p~VsfdDIgG----le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
+..+.+|+++.+ ...+.+.+++++.. + .. .+..+++|+|||+.++...++.+...+.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~---~~-----~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHN-F---NP-----EEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHS-C---CG-----GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHh-c---cc-----cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999886 33444444444432 1 11 2257899999997667777766665553
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.78 E-value=0.025 Score=61.09 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=69.6
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEe--------
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGA-------- 544 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaA-------- 544 (646)
|.|+||||+|.|-. ...+.||..|+.... .++|++|
T Consensus 296 ~~VliIDEa~~l~~---------------------------------~a~~aLlk~lEe~~~---~~~il~tn~~~~~i~ 339 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI---------------------------------ECFTYLHRALESSIA---PIVIFASNRGNCVIR 339 (456)
T ss_dssp ECEEEEESGGGCBH---------------------------------HHHHHHHHHTTSTTC---CEEEEEECCSEEECB
T ss_pred ceEEEEechhhcCH---------------------------------HHHHHHHHHhhccCC---CEEEEecCCcccccc
Confidence 57999999998732 356888888876543 4655555
Q ss_pred -cC---CCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhh--hh
Q 006411 545 -TN---RPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMGPLREALRQGIEIT--RL 602 (646)
Q Consensus 545 -TN---rPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~--~~ 602 (646)
|+ .|..|+|.++.||.. +.++.++. .++...+..+.+.++....|.++.- .+.. ..
T Consensus 340 ~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~l-l~~a~~~A 417 (456)
T 2c9o_A 340 GTEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQL-LTPANLLA 417 (456)
T ss_dssp TTSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHT-HHHHHHHH
T ss_pred ccccccccccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHH-HHHHHHHH
Confidence 33 288999999999977 48888764 3455555555544422233332211 0000 01
Q ss_pred cccCCCCccHHHHHHHHhhc
Q 006411 603 QKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 603 ~~~~~~~Vt~eDFe~AL~kv 622 (646)
.......|+.+|+..|+.-+
T Consensus 418 ~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 418 KINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHTTCSSBCHHHHHHHHHHS
T ss_pred hhcCCCccCHHHHHHHHHHh
Confidence 12244579999999998876
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.76 E-value=0.0022 Score=67.84 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
+..+..+++.+.... +||||+|+.+.. ............+.+.++|..|+++.. ..
T Consensus 170 e~~l~~i~~~l~~~~--LLVIDsI~aL~~---------------------~~~~~s~~G~v~~~lrqlL~~L~~~~k-~~ 225 (331)
T 2vhj_A 170 NVFVDDIARAMLQHR--VIVIDSLKNVIG---------------------AAGGNTTSGGISRGAFDLLSDIGAMAA-SR 225 (331)
T ss_dssp HHHHHHHHHHHHHCS--EEEEECCTTTC--------------------------------CCHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhhCC--EEEEeccccccc---------------------ccccccccchHHHHHHHHHHHHHHHHh-hC
Confidence 444555566555544 999999999865 111111111123456677777776654 34
Q ss_pred cEEEEEecCCCCcCCHHHHh
Q 006411 538 QILLVGATNRPQELDEAARR 557 (646)
Q Consensus 538 ~VlVIaATNrPd~LDpALlR 557 (646)
++.||++|| |..+|+++..
T Consensus 226 gvtVIlttn-p~s~deal~~ 244 (331)
T 2vhj_A 226 GCVVIASLN-PTSNDDKIVE 244 (331)
T ss_dssp TCEEEEECC-CSSCSSSHHH
T ss_pred CCEEEEEeC-CcccchhHHH
Confidence 678899999 7788877533
No 95
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.56 E-value=0.0083 Score=76.00 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCC-chh-hHHHHHHHHHHHcCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE-HES-SRRLKTQFLIEMEGFD 533 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~-~e~-s~rilneLL~eLDGl~ 533 (646)
.+++.++.++..++..+|++||||+|+.+++.. . .++..++ +.. ..|+++++|.+|+++.
T Consensus 1489 ~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~---------------~---~~g~~~~~~~~~~~R~lsqlL~~L~~~~ 1550 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGAVDVIVVDSVAALTPKA---------------E---IEGEIGDSHMGLAARMMSQAMRKLAGNL 1550 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH---------------H---HHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEcChhHhcccc---------------c---ccccccccccchHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999998610 0 0111122 221 3688999999999987
Q ss_pred CCCCcEEEEEe
Q 006411 534 SGSEQILLVGA 544 (646)
Q Consensus 534 ~~~~~VlVIaA 544 (646)
. ..+++||.+
T Consensus 1551 ~-~~~v~VI~t 1560 (2050)
T 3cmu_A 1551 K-QSNTLLIFI 1560 (2050)
T ss_dssp H-TTTCEEEEE
T ss_pred H-hCCcEEEEE
Confidence 7 456666554
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.56 E-value=0.11 Score=57.76 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHHHHHHHc-------CCCCCCCcEEEEEecCCCC-----------cCCHHHHhccccEEE-eCCCCC---------C
Q 006411 520 RLKTQFLIEME-------GFDSGSEQILLVGATNRPQ-----------ELDEAARRRLTKRLY-IPLPSS---------G 571 (646)
Q Consensus 520 rilneLL~eLD-------Gl~~~~~~VlVIaATNrPd-----------~LDpALlRRFDr~I~-IplPd~---------G 571 (646)
.+...|+.-|+ |. .-..++.||||+|... .|.++++.|||-.+. +..|+. -
T Consensus 315 ~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ 393 (506)
T 3f8t_A 315 PHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEV 393 (506)
T ss_dssp HHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------
T ss_pred HHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCC
Confidence 44555666555 33 2234689999999865 899999999997544 455653 4
Q ss_pred CcHHHHHHHHHHHh
Q 006411 572 YSGSDMKNLVKEAS 585 (646)
Q Consensus 572 ySGADL~~Lc~eAa 585 (646)
++..+|+..+..|-
T Consensus 394 ls~e~L~~yi~~ar 407 (506)
T 3f8t_A 394 PSYTLLRRYLLYAI 407 (506)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 67788887766554
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.35 E-value=0.018 Score=53.09 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=29.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhc-------------------CCeeeeehhhhHH
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCR-------------------QPAVIFVDEIDSL 484 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~-------------------aPsIIFIDEIDsL 484 (646)
...++|+||++.++...++.+...+... .|.||+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCcccc
Confidence 4679999999777777788877765321 3678888887764
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.99 E-value=0.028 Score=54.71 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=49.9
Q ss_pred cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCc
Q 006411 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQE 550 (646)
Q Consensus 471 ~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~ 550 (646)
..++||+|||++.+++ .+.... +.. .+|..+..-. ...+-||.+|+.+..
T Consensus 86 ~~~~vliIDEAq~l~~---------------------~~~~~~--e~~-----rll~~l~~~r--~~~~~iil~tq~~~~ 135 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWP---------------------ARSAGS--KIP-----ENVQWLNTHR--HQGIDIFVLTQGPKL 135 (199)
T ss_dssp GTTCEEEETTGGGTSB---------------------CCCTTC--CCC-----HHHHGGGGTT--TTTCEEEEEESCGGG
T ss_pred cCceEEEEEChhhhcc---------------------Cccccc--hhH-----HHHHHHHhcC--cCCeEEEEECCCHHH
Confidence 4589999999999976 331111 111 2444454333 245677888888999
Q ss_pred CCHHHHhccccEEEeCCCCCC
Q 006411 551 LDEAARRRLTKRLYIPLPSSG 571 (646)
Q Consensus 551 LDpALlRRFDr~I~IplPd~G 571 (646)
||.+++.|++.++.++.|..|
T Consensus 136 l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 136 LDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp BCHHHHTTEEEEEEEEECSSC
T ss_pred HhHHHHHHhheEEEEcCcccC
Confidence 999999999999999987654
No 99
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.81 E-value=0.0049 Score=65.89 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHhhcc-Cc-------ccccc--C-CCCCccccccCCCCchHHHHHHHHHHHh----------------
Q 006411 416 LEHAKKCVMEMVIWPLL-RP-------DIFKG--C-RSPGKGLLLFGPPIGEGEKLVRALFGVA---------------- 468 (646)
Q Consensus 416 le~~K~~L~E~V~lPL~-~p-------elf~~--~-~~PprGVLLyGPPvGesek~Vr~lF~~A---------------- 468 (646)
..++++.| +.|.+|.. .+ ..+.. . ..++..++|+|||+.++...++.+....
T Consensus 131 ~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~ 209 (377)
T 1svm_A 131 SADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF 209 (377)
T ss_dssp CCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH
T ss_pred hHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH
Confidence 34466666 67777662 11 12222 1 2456789999999666667776665432
Q ss_pred ---hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEec
Q 006411 469 ---SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 469 ---r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaAT 545 (646)
...+..++|+||++.+... .++....... .....+...+||. |.|+++|
T Consensus 210 ~lg~~~q~~~~l~dd~~~~~~~--------------------~r~l~~~~~~--~~~~~l~~~ldG~------v~v~~~t 261 (377)
T 1svm_A 210 ELGVAIDQFLVVFEDVKGTGGE--------------------SRDLPSGQGI--NNLDNLRDYLDGS------VKVNLEK 261 (377)
T ss_dssp HHGGGTTCSCEEETTCCCSTTT--------------------TTTCCCCSHH--HHHHTTHHHHHCS------SCEEECC
T ss_pred HHHHhcchhHHHHHHHHHHHHH--------------------HhhccccCcc--hHHHHHHHHhcCC------CeEeecc
Confidence 1123344555565555420 1111111110 1234566667763 5678999
Q ss_pred CCCCcCCHHHHh--ccccEEEeCC
Q 006411 546 NRPQELDEAARR--RLTKRLYIPL 567 (646)
Q Consensus 546 NrPd~LDpALlR--RFDr~I~Ipl 567 (646)
|+|+.| +++++ |++..+++..
T Consensus 262 n~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 262 KHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp SSSCCE-EECCCCEEEEECSCCCC
T ss_pred CchhhH-HHhhcCcccChhHHhhc
Confidence 999999 68877 8888776644
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.17 E-value=1 Score=59.01 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=26.5
Q ss_pred CcEEEEEecC----CCCcCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATN----RPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATN----rPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....|++|.| .-..|++++++|| +.|.+..||.
T Consensus 746 ~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 746 PHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQS 782 (2695)
T ss_dssp TTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCH
T ss_pred CCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCH
Confidence 3456778888 4567999999999 6789999986
No 101
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=89.42 E-value=2.7 Score=44.31 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=29.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
+..+.|-....+.+.+.+.. + ......|||+|+++.+.+...+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~-~---------a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK-I---------SCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH-H---------TTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred chhhhhccHHhhHHHHHHHH-h---------cCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 45677766666666665544 1 1223568999999666665555555443
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.34 E-value=0.3 Score=48.67 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=16.1
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.+++||||||+.+.......+...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999965555555555443
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=86.59 E-value=1.8 Score=44.03 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred CCccccccCCCCchHHHHHHHHHHHhhhc--CCe-eeeeh---hhhHHhhhcccccccchhhhhhhhhhccccCCCCCch
Q 006411 443 PGKGLLLFGPPIGEGEKLVRALFGVASCR--QPA-VIFVD---EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHE 516 (646)
Q Consensus 443 PprGVLLyGPPvGesek~Vr~lF~~Ar~~--aPs-IIFID---EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e 516 (646)
....+|||||+....+..++.+.+.+.+. .++ ++.+| ++..+.. .+.+.++++..+..--+..+. .
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~plf~~~kvvii~~~~~--k 88 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFS------LCQAMSLFASRQTLLLLLPEN--G 88 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHH------HHHHHHHCCSCEEEEEECCSS--C
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHH------HhcCcCCccCCeEEEEECCCC--C
Confidence 34689999999555666666666655432 343 34344 3334432 223344444443332222211 0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC------CcCCHHHHhccccEEEeCCCCC
Q 006411 517 SSRRLKTQFLIEMEGFDSGSEQILLVGATNRP------QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 517 ~s~rilneLL~eLDGl~~~~~~VlVIaATNrP------d~LDpALlRRFDr~I~IplPd~ 570 (646)
......+.|+..++.... .+++|.+|+.+ ..+-+++..|. ..+.+..|+.
T Consensus 89 l~~~~~~aLl~~le~p~~---~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~ 144 (343)
T 1jr3_D 89 PNAAINEQLLTLTGLLHD---DLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQ 144 (343)
T ss_dssp CCTTHHHHHHHHHTTCBT---TEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCT
T ss_pred CChHHHHHHHHHHhcCCC---CeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCH
Confidence 122356778888876543 34444444443 34666777776 4567777654
No 104
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.85 E-value=2.1 Score=43.79 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=29.1
Q ss_pred CcEEEEEecCC-C----------CcCCHHHHhccccEEEeC---CCCCC-CcHHHHHHHHH
Q 006411 537 EQILLVGATNR-P----------QELDEAARRRLTKRLYIP---LPSSG-YSGSDMKNLVK 582 (646)
Q Consensus 537 ~~VlVIaATNr-P----------d~LDpALlRRFDr~I~Ip---lPd~G-ySGADL~~Lc~ 582 (646)
.+..||.|||. + +...++|.+|+- .+.|+ +++.| .+..|++..+.
T Consensus 189 ~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~-~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 189 DPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMF-KFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp CCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEE-EEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred cCCCEEEEecCCcccccccCccchhhhHHHhhhEE-EEECCCcCCcccCCCCHHHHHHHHH
Confidence 34677888887 2 255678887542 23443 22446 88999998886
No 105
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=85.44 E-value=8.1 Score=40.48 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=29.4
Q ss_pred cEEEEEecCCC-------CcCCHHHHhcccc-EEEeCCCCCCCcHHHHHHHHHHHhhh
Q 006411 538 QILLVGATNRP-------QELDEAARRRLTK-RLYIPLPSSGYSGSDMKNLVKEASMG 587 (646)
Q Consensus 538 ~VlVIaATNrP-------d~LDpALlRRFDr-~I~IplPd~GySGADL~~Lc~eAa~~ 587 (646)
.|-||+|||+. ..+.+.|..|+.- .|.+|+..+ -..||..|++.....
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLre--R~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRE--RGKDVILLAEYFLKK 318 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGG--STTHHHHHHHHHHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhh--chhhHHHHHHHHHHH
Confidence 47799999963 2334455556543 466665443 347898888665543
No 106
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.11 E-value=1.8 Score=40.22 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=37.7
Q ss_pred CCcccccccChHH----HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeee
Q 006411 406 PHVRWDDIAGLEH----AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFV 478 (646)
Q Consensus 406 p~VsfdDIgGle~----~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFI 478 (646)
...+|+++.+... +.+.+.+++... +. ..++++++|+|||+.++...++.+...+......++++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY---EP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh---hh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999887542 334444444321 11 11248999999997667777777766654433333333
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.92 E-value=1.3 Score=58.72 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=28.2
Q ss_pred CcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~ 570 (646)
.++.+|+|.|-| ..|+++++|||.. ++++.|+.
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~ 1458 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPST 1458 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCH
Confidence 468899999988 4699999999966 79999975
No 108
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.86 E-value=0.36 Score=61.55 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHHHHhhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC
Q 006411 461 VRALFGVASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS 536 (646)
Q Consensus 461 Vr~lF~~Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~ 536 (646)
+..+++.++. ..|++||||.|..+... ..+. .+..+...+...|.+++++..|.++.. .
T Consensus 795 i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~---------------~~~~-~~~Gs~~q~La~Reis~ilr~Lk~lAk-e 857 (2050)
T 3cmu_A 795 GEQALEICDALARSGAVDVIVVDSVAALTPK---------------AEIE-GEIGDSHMGLAARMMSQAMRKLAGNLK-Q 857 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCH---------------HHHH-SCTTCCCTTHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHhhccCCCEEEEcchhhhccc---------------cccc-CCCCchhhHHHHHHHHHHHHHHHHHHH-H
Confidence 5556666654 68999999999998640 0000 010111112334567888888888876 4
Q ss_pred CcEEEEEec
Q 006411 537 EQILLVGAT 545 (646)
Q Consensus 537 ~~VlVIaAT 545 (646)
.+|.||++.
T Consensus 858 ~~v~VI~l~ 866 (2050)
T 3cmu_A 858 SNTLLIFIN 866 (2050)
T ss_dssp TTCEEEEEE
T ss_pred hCCEEEEec
Confidence 466666654
No 109
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=66.83 E-value=7.1 Score=39.53 Aligned_cols=42 Identities=14% Similarity=0.340 Sum_probs=33.2
Q ss_pred ccccccCCC-------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 445 KGLLLFGPP-------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 445 rGVLLyGPP-------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
--+|+-||| -+....++..+++.++..+|.+++|+++-.|+.
T Consensus 62 ~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~ 116 (331)
T 3ubt_Y 62 CDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMA 116 (331)
T ss_dssp CSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGG
T ss_pred ccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeeccccc
Confidence 357788888 223346788888888999999999999999876
No 110
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.56 E-value=15 Score=38.27 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHhhh--cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcE
Q 006411 462 RALFGVASC--RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539 (646)
Q Consensus 462 r~lF~~Ar~--~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~V 539 (646)
..+|..+.. ..|.+|+|||+..++. .. .......+..++.++..+ ++
T Consensus 250 ~~i~~~~~~~~~~~~~i~iDEa~~~~~---------------------~~-----~~~~~~~l~~~~~~~Rk~-----g~ 298 (392)
T 4ag6_A 250 SFAWNILERDRRERTVLVVDEAWMLVD---------------------PQ-----TPQAIAFLRDTSKRIRKY-----NG 298 (392)
T ss_dssp HHHHHHHHHSCCTTCEEEETTGGGGCC---------------------TT-----CTHHHHHHHHHHHHGGGG-----TC
T ss_pred HHHHHHHHhCCCccEEEEEecHHHHhC---------------------cC-----chHHHHHHHHHHHHhhhh-----Ce
Confidence 444555543 4689999999999875 11 122344566666666544 46
Q ss_pred EEEEecCCCCcCCH--------HHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 540 LLVGATNRPQELDE--------AARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 540 lVIaATNrPd~LDp--------ALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
.++.+|-.|.++.. +++...+-+|.++.+. +|++.+.+
T Consensus 299 ~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~~-----~~~~~~~~ 344 (392)
T 4ag6_A 299 SLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGE-----KDLEAITT 344 (392)
T ss_dssp EEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCCH-----HHHHHHHH
T ss_pred EEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCCh-----hhHHHHHH
Confidence 78888999988864 6777889999999853 56555543
No 111
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.06 E-value=3 Score=52.56 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC---CC--chhhHHHHHHHHHH
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD---GE--HESSRRLKTQFLIE 528 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~---~~--~e~s~rilneLL~e 528 (646)
...+|..+..+...++..+|++|+||-+.+|.++ ..-. ++ -.-.-|+.++-|..
T Consensus 1491 p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~---------------------~e~~~~~~~~~~~~~ar~m~~~lr~ 1549 (1706)
T 3cmw_A 1491 PDTGEQALEICDALARSGAVDVIVVDSVAALTPK---------------------AEIEGEIGDSHMGLAARMMSQAMRK 1549 (1706)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCT---------------------TTTC-------CCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcc---------------------ccccccccccchhHHHHHHHHHHHH
Confidence 5556888999999999999999999999999872 1111 11 11234677777777
Q ss_pred HcCCCCCCCcEEEEEecCC
Q 006411 529 MEGFDSGSEQILLVGATNR 547 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNr 547 (646)
|.+.-. ..++.+|++.--
T Consensus 1550 l~~~~~-~~~~~~i~~~~~ 1567 (1706)
T 3cmw_A 1550 LAGNLK-QSNTLLIFINQI 1567 (1706)
T ss_dssp HHHHHH-HHTCEEEEEECB
T ss_pred HHHHHH-hCCcEEEEeecc
Confidence 777655 345666665443
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=61.17 E-value=27 Score=34.43 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 459 KLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 459 k~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..++.+.+.+....|.+|+|||++.+..
T Consensus 115 ~~~~~l~~~~~~~~~~vlvlDe~~~~~~ 142 (350)
T 2qen_A 115 EVFRELNDLGEELGEFIVAFDEAQYLRF 142 (350)
T ss_dssp HHHHHHHHHHHHHSCEEEEEETGGGGGG
T ss_pred HHHHHHHHHHhccCCEEEEEeCHHHHhc
Confidence 3445555555544599999999999864
No 113
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=57.74 E-value=22 Score=35.08 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=17.7
Q ss_pred HHHHHHHhhhc--CCeeeeehhhhHHhh
Q 006411 461 VRALFGVASCR--QPAVIFVDEIDSLLS 486 (646)
Q Consensus 461 Vr~lF~~Ar~~--aPsIIFIDEIDsL~~ 486 (646)
+..+++..... .|.+|+|||++.+..
T Consensus 124 ~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 124 FANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred HHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 34444444332 499999999999864
No 114
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=54.98 E-value=13 Score=37.74 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred CcccccccChH----HHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hcCCeeeee
Q 006411 407 HVRWDDIAGLE----HAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CRQPAVIFV 478 (646)
Q Consensus 407 ~VsfdDIgGle----~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~aPsIIFI 478 (646)
+.+|+++.+-. .+.+.+.+++... + ..+..++||||||+.++...++.+...+. .....++|+
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 46888888633 2333344444321 1 01357999999997777777777766655 433344433
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=52.94 E-value=21 Score=33.62 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC
Q 006411 457 GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS 536 (646)
Q Consensus 457 sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~ 536 (646)
.+..+..+...+....|.+|+|||+-+++. .. .+....+..+..++..+..
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld---------------------~~---~d~~~~~~~l~~l~~~l~~----- 170 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIAL---------------------RL---EEERKIREVLLKLNTILLE----- 170 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHH---------------------HS---SSGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHh---------------------hc---CCHHHHHHHHHHHHHHHHH-----
Confidence 344556666666778999999999998875 11 1223345556677766632
Q ss_pred CcEEEEEecCCCCcCC-----HHHHhcc-ccEEEeCC
Q 006411 537 EQILLVGATNRPQELD-----EAARRRL-TKRLYIPL 567 (646)
Q Consensus 537 ~~VlVIaATNrPd~LD-----pALlRRF-Dr~I~Ipl 567 (646)
.++.||.+|.....+. +.+..-+ |+.+.+..
T Consensus 171 ~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 171 MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 2457777887765541 2233456 88877753
No 116
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=52.39 E-value=4.2 Score=44.59 Aligned_cols=38 Identities=26% Similarity=0.492 Sum_probs=15.4
Q ss_pred CCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHH
Q 006411 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHA 419 (646)
Q Consensus 378 ~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~ 419 (646)
...++..+|+.++|... .++..+.|+|+|+||||..+.
T Consensus 448 t~edf~~Al~~~~ps~~----re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 448 TMDDFRWALSQSNPSAL----RETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp CHHHHHHHHTSHHHHHH----HGGGC----------------
T ss_pred CHHHHHHHHHhCCchhh----hcccccCCCCCHHHcCCCccc
Confidence 34567788888888765 355678999999999997653
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=50.95 E-value=15 Score=38.75 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
+..+..+...++...+.+|+||.+..+.+
T Consensus 138 e~~l~~l~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 138 EQALEIMELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeChHHhcc
Confidence 33334444444556788888888888764
No 118
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=45.43 E-value=27 Score=40.06 Aligned_cols=76 Identities=20% Similarity=0.382 Sum_probs=47.5
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCC-CccccccCCC------Cc-----------hHHHHHHHHHHHh
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSP-GKGLLLFGPP------IG-----------EGEKLVRALFGVA 468 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~P-prGVLLyGPP------vG-----------esek~Vr~lF~~A 468 (646)
..+|.-+.++....+.+.+.+..-... +. ...| ---||+-||| .| ....++..+++.+
T Consensus 345 ~~~w~~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~G~VDvl~GGpPCQ~FS~aG~~kg~~~~~~D~R~~L~~~~~riv 420 (784)
T 4ft4_B 345 EDTWEPIDNLSDCPQKIREFVQEGHKR-KI---LPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIV 420 (784)
T ss_dssp SCEEEESGGGTTCHHHHHHHHHHHHHH-TS---SCCTTSCSEEEECCCCCSSSGGGGGSCTTSTTTSTTCHHHHHHHHHH
T ss_pred cccccccccccccchhccccccccchh-hc---cCCCCCeEEEEecCCCcchhhhhcccCcCccccCchhHHHHHHHHHH
Confidence 455666666666666666555431110 00 0011 1248888999 11 1124677888888
Q ss_pred hhcCCeeeeehhhhHHhh
Q 006411 469 SCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 469 r~~aPsIIFIDEIDsL~~ 486 (646)
...+|.+++++++-.|+.
T Consensus 421 ~~~rPk~fvlENV~glls 438 (784)
T 4ft4_B 421 AYLKPKYVLMENVVDILK 438 (784)
T ss_dssp HHHCCSEEEEEEEGGGGT
T ss_pred HHHCCCEEEEEecCCccc
Confidence 999999999999998876
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=44.92 E-value=13 Score=38.88 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
+..+..+...++...|.+|+||++.++..
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 44444455556667899999999999874
No 120
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=39.48 E-value=33 Score=38.69 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCC--cCCHHHHhccccEEEeCCCC
Q 006411 536 SEQILLVGATNRPQ--ELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 536 ~~~VlVIaATNrPd--~LDpALlRRFDr~I~IplPd 569 (646)
.-+|.+|.||.+|. .|+..++.-|..+|-+.+.+
T Consensus 376 a~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 376 AAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp TTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred hCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 35799999999998 89999888888888777654
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=39.28 E-value=28 Score=36.73 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 459 KLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 459 k~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..+..+...++...|.+|+||.|-.+.+
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 3333344444456677888877776653
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=39.10 E-value=75 Score=29.17 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhcCCe--eeeehhhhHHhh
Q 006411 457 GEKLVRALFGVASCRQPA--VIFVDEIDSLLS 486 (646)
Q Consensus 457 sek~Vr~lF~~Ar~~aPs--IIFIDEIDsL~~ 486 (646)
.....+.+...+....|. +|+|||+.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 106 PEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 334455566666667899 999999998864
No 123
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=35.99 E-value=33 Score=35.50 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=31.1
Q ss_pred ccccccCCC----------Cc---hHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 445 KGLLLFGPP----------IG---EGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 445 rGVLLyGPP----------vG---esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
--+|+-||| -| ....++..+++.++..+|.+++++++-.|..
T Consensus 72 ~D~l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~ 126 (327)
T 2c7p_A 72 HDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFAS 126 (327)
T ss_dssp CSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGT
T ss_pred CCEEEECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHh
Confidence 467788888 11 1123667777788888999999999999875
No 124
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=35.55 E-value=4.3 Score=34.64 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=41.6
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhh-hhhhhhh-hhhhcccccceeecc
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLT-IMFMSIS-HTHAHNYEHVQVLIP 364 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~-~~~~~~~-~~~~~~~~~~~~l~~ 364 (646)
..+|.|++.++.+..++ ++|++++.+.++. .+.++.+ ++|..++..+++|+.
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 35789999988777554 3689999999994 5899888 899999998888864
No 125
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=34.72 E-value=57 Score=36.15 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=27.4
Q ss_pred CcEEEEEecCCCC--cCCHHHHhccccEEEeCCCC
Q 006411 537 EQILLVGATNRPQ--ELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 537 ~~VlVIaATNrPd--~LDpALlRRFDr~I~IplPd 569 (646)
-+|.+|.+|.+|. .|+..++.-|..+|-+.+.+
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSS
T ss_pred CCcEEEEEecCCccccccHHHHhhcCCeEEEEcCC
Confidence 3789999999998 69988888888888887753
No 126
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=34.60 E-value=30 Score=32.11 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=19.2
Q ss_pred HHHHHHHhh-----hcCCeeeeehhhhHHhh
Q 006411 461 VRALFGVAS-----CRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 461 Vr~lF~~Ar-----~~aPsIIFIDEIDsL~~ 486 (646)
+..+...+. ...|.+|+|||+-+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 109 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp HHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred HHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 444555555 67899999999988765
No 127
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.21 E-value=5.8 Score=35.24 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=41.0
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeeccccc
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSS 367 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~ 367 (646)
..+|+|++.++.+..++ ..|++.+.+.++.. +.++.. .+|..++..+.+|++..+
T Consensus 38 ~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~D 99 (109)
T 2wg5_A 38 LLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKD 99 (109)
T ss_dssp EEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC----
T ss_pred ceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcC
Confidence 34788888888766554 25789999999944 898877 999999999999998743
No 128
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=34.20 E-value=47 Score=34.35 Aligned_cols=41 Identities=20% Similarity=0.476 Sum_probs=28.0
Q ss_pred cccccCCC------Cc-----hH--HHHHHHHHHHhhhcC--CeeeeehhhhHHhh
Q 006411 446 GLLLFGPP------IG-----EG--EKLVRALFGVASCRQ--PAVIFVDEIDSLLS 486 (646)
Q Consensus 446 GVLLyGPP------vG-----es--ek~Vr~lF~~Ar~~a--PsIIFIDEIDsL~~ 486 (646)
-+|+-||| .| +. ..++..+.+.++..+ |.+++++++..|..
T Consensus 70 D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~ 125 (343)
T 1g55_A 70 DMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEV 125 (343)
T ss_dssp SEEEECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGG
T ss_pred CEEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccC
Confidence 57788888 11 11 124556667888888 99999999988764
No 129
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=31.14 E-value=20 Score=33.05 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
.+..+-..+.. .|.+|+|||+.+++.
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCCCTT
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHHHhh
Confidence 34433333333 699999999998864
No 130
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=29.48 E-value=47 Score=34.50 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhcC-CeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQ-PAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~ 486 (646)
.+..+++.++..+ |.+++++++..|..
T Consensus 98 L~~~~~r~i~~~~~P~~~vlENV~gl~~ 125 (333)
T 4h0n_A 98 SFLYLIGILDQLDNVDYILMENVKGFEN 125 (333)
T ss_dssp CHHHHHHHGGGCTTCCEEEEEECTTGGG
T ss_pred cHHHHHHHHHHhcCCCEEEEecchhhhh
Confidence 5667777788876 99999999998864
No 131
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=28.13 E-value=37 Score=31.82 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 459 KLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 459 k~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..+..+.+.+....|.+|+|||+-.++.
T Consensus 106 ~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 106 QLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 3445566666667899999999998875
No 132
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=27.58 E-value=2e+02 Score=26.50 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=12.8
Q ss_pred hhcCCeeeeehhhhHH
Q 006411 469 SCRQPAVIFVDEIDSL 484 (646)
Q Consensus 469 r~~aPsIIFIDEIDsL 484 (646)
-...|.||++||++-.
T Consensus 96 l~~~p~llilDEigp~ 111 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKM 111 (178)
T ss_dssp HHCTTCEEEECCCSTT
T ss_pred cccCCCEEEEeCCCCc
Confidence 4578999999998743
No 133
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.27 E-value=2e+02 Score=38.91 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=26.3
Q ss_pred CcEEEEEecC----CCCcCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATN----RPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATN----rPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....|++|.| --..|+++|+.|| +-|.++.||.
T Consensus 706 ~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 706 QDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDR 742 (3245)
T ss_dssp TTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCH
T ss_pred CCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCH
Confidence 3567888888 3458999999998 5589999986
No 134
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=25.61 E-value=93 Score=30.47 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=41.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
.|...-+.+.|-+...+.|.+.+.. .+.++++||++-++...++.+.+.+ + +++++
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~ 61 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNER----P-GILID 61 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE
Confidence 3455667899999888888887643 1579999999777778888887665 2 66665
No 135
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=25.25 E-value=1.5e+02 Score=27.57 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
.+..+-..++...+.+++||.+..+..
T Consensus 123 ~~~~~~~~~~~~~~~~vviD~~~~l~~ 149 (251)
T 2zts_A 123 FLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp HHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEcHHHHhh
Confidence 344444555566677777777766654
No 136
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=24.44 E-value=1e+02 Score=32.39 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=30.5
Q ss_pred ccccccCCC------C------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 445 KGLLLFGPP------I------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 445 rGVLLyGPP------v------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
--+|+-||| . .....++..+.+.+...+|.+++++++-.|+.
T Consensus 72 ~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s 125 (376)
T 3g7u_A 72 IDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQ 125 (376)
T ss_dssp CCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTC
T ss_pred eeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhc
Confidence 457777888 1 11224566777788889999999999988865
No 137
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=22.56 E-value=94 Score=33.25 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=29.3
Q ss_pred cccccCCC----------Cc------hHHHHHHHHHHHhhh--------cCCeeeeehhhhHHhh
Q 006411 446 GLLLFGPP----------IG------EGEKLVRALFGVASC--------RQPAVIFVDEIDSLLS 486 (646)
Q Consensus 446 GVLLyGPP----------vG------esek~Vr~lF~~Ar~--------~aPsIIFIDEIDsL~~ 486 (646)
-||+.||| -| ....++..++..+.. ..|.+++++++-.|..
T Consensus 127 Dll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~rii~~~~~k~~~~~~Pk~~l~ENV~gl~~ 191 (403)
T 4dkj_A 127 DIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKNSFSKEEMPKYLLMENVKNLLS 191 (403)
T ss_dssp SEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHHHHHHHHHSCGGGSCSEEEEEEEGGGGS
T ss_pred cEEEEeCCCCCHHHhCCCCCCCccccccchhHHHHHHHHHHhhhhhccccCCCEEEEecchhhhh
Confidence 68888888 11 222455566666665 7999999999998875
No 138
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=20.68 E-value=1.5e+02 Score=30.65 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=20.8
Q ss_pred HHHHHHHH-Hhhhc--CCeeeeehhhhHHhh
Q 006411 459 KLVRALFG-VASCR--QPAVIFVDEIDSLLS 486 (646)
Q Consensus 459 k~Vr~lF~-~Ar~~--aPsIIFIDEIDsL~~ 486 (646)
.++..+.+ .++.. .|.+++++++-.|..
T Consensus 106 ~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~ 136 (327)
T 3qv2_A 106 KSVLHLYRDILPYLINKPKHIFIENVPLFKE 136 (327)
T ss_dssp HHHHHHHHTTGGGCSSCCSEEEEEECGGGGG
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEchhhhcC
Confidence 34555666 66666 899999999998864
No 139
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=20.21 E-value=1.5e+02 Score=29.81 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-cCCeeeeeh
Q 006411 417 EHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-RQPAVIFVD 479 (646)
Q Consensus 417 e~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-~aPsIIFID 479 (646)
+.+++.+.+.+..-+..... .....++.-++|.||++.++...+..+-..... ..-.|+++|
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34556666655543322111 111234567889999955556666666555543 444677765
Done!