BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006412
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 177/421 (42%), Gaps = 58/421 (13%)
Query: 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVL 250
+ + I G+RGD +P +A+A RL+E G R+ ++ GV P+G R
Sbjct: 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVR-- 58
Query: 251 AGYMARNKGLIPSGPGEISIQR-----KQIKAIIESLLPACTDPDIETGVPFRSQAIIAN 305
AG AR G +P G E+ + ++ A IE T + V RS
Sbjct: 59 AG--AREPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRS------ 110
Query: 306 PPAYGHAHVAEALGVPIHIFFTMP-WTPTYEFPHPLARVPQSAGYWLSYIIVDLLIWWGI 364
+AE LG+P P P+ + Q A D L +
Sbjct: 111 --------MAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGA---------DRLFGDAV 153
Query: 365 RSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWS-PHLVP-KPSDWGSLVAVVGYCL 422
S+ + + LPP+ + Y + ++ + P L P +P+D G+ V + L
Sbjct: 154 NSH-----RASIGLPPVEHLYDY----GYTDQPWLAADPVLSPLRPTDLGT-VQTGAWIL 203
Query: 423 LNLGSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGW 482
+ E F ++ G P+Y+GFGS P P + + +EA+R G+R ++ GW
Sbjct: 204 PDQRPLSAELEGF---LRAGSPPVYVGFGSGPA--PAEAARVAIEAVRAQGRRVVLSSGW 258
Query: 483 GDLGKITEVPDNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCPTTVVPFFGDQF 542
LG+I E D+ ++ + H LF + + +AG P VVP DQ
Sbjct: 259 AGLGRIDE-GDDCLVVGEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQP 317
Query: 543 FWGDRVQQKGLGPA---PIPISQLTVENLSNAVRFMLQPEVKSRAMELAKLIENEDGVAA 599
++ RV G+G A P P TVE+LS A+ L P +++RA +A I + A
Sbjct: 318 YYAGRVADLGVGVAHDGPTP----TVESLSAALATALTPGIRARAAAVAGTIRTDGTTVA 373
Query: 600 A 600
A
Sbjct: 374 A 374
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 116/456 (25%), Positives = 177/456 (38%), Gaps = 90/456 (19%)
Query: 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVL 250
+ + + G+RGD +P +A+A R+++ G VR+ + + GV P+G R
Sbjct: 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVGPSAR-- 58
Query: 251 AGYMARNKGLIPS-----GPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIAN 305
+ R K L I+ Q +I A E T + + RS
Sbjct: 59 -APIQRAKPLTAEDVRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRS------ 111
Query: 306 PPAYGHAHVAEALGVPIHIFFTM----------------PWTP-TYEFPHPLARVPQSAG 348
VAE LG+P F P T T + P R QSA
Sbjct: 112 --------VAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNNQSA- 162
Query: 349 YWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVP-K 407
+ +N R + LPP+ T+ G H A P L P +
Sbjct: 163 ------------YQRYGGLLNSHRD-AIGLPPVEDIFTF-GYTDHPWVAA--DPVLAPLQ 206
Query: 408 PSDWGSLVAVVGYCLLNLGSKYQPQE-----NFVQWIQRGPEPIYIGFGSMPLEDPKKTT 462
P+D + + G+ P E ++ GP P+Y+GFGS L P
Sbjct: 207 PTDLDA---------VQTGAWILPDERPLSPELAAFLDAGPPPVYLGFGS--LGAPADAV 255
Query: 463 EIILEALRDTGQRGIIDRGWGDLGKITEVPD---NIFLLEDCPHDWLFPQCSXXXXXXXX 519
+ ++A+R G+R I+ RGW DL +PD + F + + H LF + +
Sbjct: 256 RVAIDAIRAHGRRVILSRGWADL----VLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGA 311
Query: 520 XXXXXXLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPA---PIPISQLTVENLSNAVRFML 576
+AG P ++P DQ ++ RV + G+G A PIP T ++LS A+ L
Sbjct: 312 GTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIP----TFDSLSAALATAL 367
Query: 577 QPEVKSRAMELAKLIENEDGVAAA---VDAFHRHLP 609
PE +RA +A I + AA +DA R P
Sbjct: 368 TPETHARATAVAGTIRTDGAAVAARLLLDAVSREKP 403
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/423 (24%), Positives = 174/423 (41%), Gaps = 62/423 (14%)
Query: 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVL 250
+ + + V GTRGDV+ +A+A RL+ G + R+ + GV P+G L
Sbjct: 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVG-----L 55
Query: 251 AGYMARNKGLIPS--------GPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAI 302
+M +G+ P + +Q + E D+ RS
Sbjct: 56 PQHMMLQEGMPPPPPEEEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRS--- 112
Query: 303 IANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPH--PLARVPQSAGYWLSYIIVDLLI 360
VAE LG+P F+++P PH P P + G + D+ +
Sbjct: 113 -----------VAEKLGLPF--FYSVPSPVYLASPHLPPAYDEPTTPG------VTDIRV 153
Query: 361 WWGIRS--YINDF------RKRKLKLPPIA-YFSTYHGSISHLPTAYMWSPHLVPKPSDW 411
W R+ + + + R+ ++ LPP+ F HG L P L P D
Sbjct: 154 LWEERAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGERPLLAA----DPVLAPLQPDV 209
Query: 412 GSLVAVVGYCLLNLGSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRD 471
++ G LL+ P+ ++ G P++IGFGS ++ +EA+R
Sbjct: 210 DAVQ--TGAWLLSDERPLPPE--LEAFLAAGSPPVHIGFGSSSGRGIADAAKVAVEAIRA 265
Query: 472 TGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCP 531
G+R I+ RGW +L + + D+ F +++ LF + + +AG P
Sbjct: 266 QGRRVILSRGWTEL-VLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVP 324
Query: 532 TTVVPFFGDQFFWGDRVQQKGLGPA---PIPISQLTVENLSNAVRFMLQPEVKSRAMELA 588
V+P DQ ++ RV G+G A P P T E+LS A+ +L PE ++RA +A
Sbjct: 325 QLVIPRNTDQPYFAGRVAALGIGVAHDGPTP----TFESLSAALTTVLAPETRARAEAVA 380
Query: 589 KLI 591
++
Sbjct: 381 GMV 383
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/432 (25%), Positives = 178/432 (41%), Gaps = 74/432 (17%)
Query: 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVL 250
+ + I G+RGD +P +A+A RL+E G R+ ++ GV P+G R
Sbjct: 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVR-- 58
Query: 251 AGYMARNKGLIPSGPGEISIQR-----KQIKAIIESLLPACTDPDIETGVPFRSQAIIAN 305
AG AR G +P G E+ + ++ A IE D + TG+
Sbjct: 59 AG--AREPGELPPGAAEVVTEVVAEWFDKVPAAIEG-----CDAVVTTGL---------L 102
Query: 306 PPAYGHAHVAEALGVPIHIFFTMP-WTPTYEFPHPLARVPQSAGYWLSYIIVDLLIWWGI 364
P A +AE LG+P P P+ + Q A D L +
Sbjct: 103 PAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGA---------DRLFGDAV 153
Query: 365 RSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVP-KPSDWGSLVAVVGYCLL 423
S+ + + LPP+ + Y + A P L P +P+D G++
Sbjct: 154 NSH-----RASIGLPPVEHLYDYGYTDQPWLAA---DPVLSPLRPTDLGTV--------- 196
Query: 424 NLGSKYQPQE-----NFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGII 478
G+ P E ++ G P+Y+GFGS ++ ++A+R +G+R ++
Sbjct: 197 QTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVL 256
Query: 479 DRGWGDLGKITEVPD---NIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCP---- 531
RGW DL +PD + F++ + LF + + ++AG P
Sbjct: 257 SRGWADL----VLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVV 312
Query: 532 TTVVPFFGDQFFWGDRVQQKGLGPA---PIPISQLTVENLSNAVRFMLQPEVKSRAMELA 588
VV +Q + DRV + G+G A P+P T+++LS A+ L PE+++RA +A
Sbjct: 313 RRVVDNVVEQAYHADRVAELGVGVAVDGPVP----TIDSLSAALDTALAPEIRARATTVA 368
Query: 589 KLIENEDGVAAA 600
I + AA
Sbjct: 369 DTIRADGTTVAA 380
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 5/144 (3%)
Query: 437 QWIQRGPEP----IYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVP 492
+W+ PE + +G S + + E +L A+ D I L + +P
Sbjct: 259 EWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIP 318
Query: 493 DNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCPTTVVPFFGDQFFWGDRVQQKG 552
DN+ + P L P C+ G P ++P D R Q+ G
Sbjct: 319 DNVRTVGFVPMHALLPTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFG 378
Query: 553 LGPAPIPISQLTVENLSNAVRFML 576
G A +P+ +LT + L +V+ +L
Sbjct: 379 AGIA-LPVPELTPDQLRESVKRVL 401
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 154 EVDLDKSAPFLEFQPVEGPPIILDDTSFSDSKKSIP-RLNIAILVVGTRGDVQPFLAMAK 212
E+ LD +A L QP+E P ++ D++SF D IP ++ + V G D L++ +
Sbjct: 265 EIGLDAAA--LPGQPMEAPVMLWDESSFPD----IPGAVSANMTVKGQSEDPGSLLSLFR 318
Query: 213 RLQEFGHRVRLATHANFRTFVRSAGVDFF 241
RL + + R H +F F SAG F
Sbjct: 319 RLSDQRSKERSLLHGDFHAF--SAGPGLF 345
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 4/126 (3%)
Query: 486 GKITEVPDNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCPTTVVPFFGDQFFWG 545
++ E+PDN+ + + P + Q L P VP DQF
Sbjct: 276 AELGELPDNVEVHDWVPQLAILRQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
Query: 546 DRVQQKGLGPAPIPISQLTVENL--SNAVRFMLQPEVKSRAMELAKLIENEDGVAAAVDA 603
D +Q GLG A ++ +L A+ + PEV R + + E G A D
Sbjct: 336 DMLQ--GLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADL 393
Query: 604 FHRHLP 609
LP
Sbjct: 394 IEAELP 399
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 154 EVDLDKSAPFLEFQPVEGPPIILDDTSFSDSKKSIP-RLNIAILVVGTRGDVQPFLAMAK 212
E+ LD +A L QP E P + D++SF D IP ++ V G D L++ +
Sbjct: 265 EIGLDAAA--LPGQPXEAPVXLWDESSFPD----IPGAVSANXTVKGQSEDPGSLLSLFR 318
Query: 213 RLQEFGHRVRLATHANFRTFVRSAGVDFF 241
RL + + R H +F F SAG F
Sbjct: 319 RLSDQRSKERSLLHGDFHAF--SAGPGLF 345
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 83/251 (33%), Gaps = 38/251 (15%)
Query: 320 VPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLP 379
+P ++ W P+ A + + G L +V L WG+ F R +L
Sbjct: 103 LPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVV--LHRWGVDPTAGPFSDRAHEL- 159
Query: 380 PIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWI 439
+ +HG ++ LPT P L+ P C +L + PQ VQ++
Sbjct: 160 -LDPVCRHHG-LTGLPT-----PELILDP------------CPPSLQASDAPQGAPVQYV 200
Query: 440 --------------QRGPEPIYIGFGSMPLE--DPKKTTEIILEALRDTGQRGIIDRGWG 483
+ + I G M L P + A G +I
Sbjct: 201 PYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPE 260
Query: 484 DLGKITEVPDNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCPTTVVPFFGDQFF 543
+T++PDN + E P + C + G P V+P + DQF
Sbjct: 261 HRALLTDLPDNARIAESVPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFD 320
Query: 544 WGDRVQQKGLG 554
+ + G G
Sbjct: 321 YARNLAAAGAG 331
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 51/251 (20%), Positives = 83/251 (33%), Gaps = 38/251 (15%)
Query: 320 VPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLP 379
+P ++ W P+ A + + G L +V L WG+ F R +L
Sbjct: 103 LPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVV--LHRWGVDPTAGPFSDRAHEL- 159
Query: 380 PIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWI 439
+ +HG ++ LPT P L+ P C +L + PQ VQ++
Sbjct: 160 -LDPVCRHHG-LTGLPT-----PELILDP------------CPPSLQASDAPQGAPVQYV 200
Query: 440 --------------QRGPEPIYIGFGSMPLE--DPKKTTEIILEALRDTGQRGIIDRGWG 483
+ + I G M L P + A G +I
Sbjct: 201 PYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPE 260
Query: 484 DLGKITEVPDNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCPTTVVPFFGDQFF 543
+T++PDN + E P + C + G P V+P + DQF
Sbjct: 261 HRALLTDLPDNARIAESVPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFD 320
Query: 544 WGDRVQQKGLG 554
+ + G G
Sbjct: 321 YARNLAAAGAG 331
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 198 VGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMA 255
+GT G P L +A + GH V AT F +R G F P+ V G++A
Sbjct: 28 LGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLG--FEPVATGXPVFDGFLA 83
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 21/59 (35%)
Query: 484 DLGKITEVPDNIFLLEDCPHDWLFPQCSXXXXXXXXXXXXXXLKAGCPTTVVPFFGDQF 542
D+ + EVP N+ L P L P L AG P P+ GD F
Sbjct: 283 DVSGLGEVPANVRLESWVPQAALLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFP 242
++ I+ V + G + P L + L GHRV T F VR+AG P
Sbjct: 22 HLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVP 72
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFP 242
++ I+ V + G + P L + L GHRV T F VR+AG P
Sbjct: 22 HLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVP 72
>pdb|2DVT|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVT|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
From Rhizobium
pdb|2DVU|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVU|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With 2,6-Dihydroxybenzoate
pdb|2DVX|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
pdb|2DVX|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
Length = 327
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 447 YIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLG 486
++ F ++PL+DP TE + + D G G + G+ G
Sbjct: 95 FLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEG 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,181,135
Number of Sequences: 62578
Number of extensions: 870424
Number of successful extensions: 1999
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1972
Number of HSP's gapped (non-prelim): 26
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)