Query 006412
Match_columns 646
No_of_seqs 326 out of 1629
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03784 GT1_Gtf_like This fami 100.0 3.4E-50 7.4E-55 439.0 41.0 394 191-606 1-400 (401)
2 PHA03392 egt ecdysteroid UDP-g 100.0 1.4E-49 3.1E-54 443.9 41.3 441 191-641 21-497 (507)
3 PF00201 UDPGT: UDP-glucoronos 100.0 6.2E-49 1.3E-53 441.5 0.9 434 192-640 2-472 (500)
4 TIGR01426 MGT glycosyltransfer 100.0 2.9E-44 6.3E-49 391.5 33.5 386 197-609 2-391 (392)
5 COG1819 Glycosyl transferases, 100.0 4.1E-42 9E-47 374.3 26.8 392 190-611 1-402 (406)
6 PLN02670 transferase, transfer 100.0 2.3E-40 5E-45 364.8 28.0 399 188-611 4-466 (472)
7 PLN02562 UDP-glycosyltransfera 100.0 5.5E-40 1.2E-44 361.9 30.7 386 189-607 5-446 (448)
8 PLN02208 glycosyltransferase f 100.0 4.4E-39 9.6E-44 353.3 33.8 385 189-608 3-437 (442)
9 PLN02448 UDP-glycosyltransfera 100.0 2.8E-39 6.1E-44 358.3 28.3 393 187-608 7-455 (459)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.4E-39 1.4E-43 352.9 26.9 390 188-607 5-447 (451)
11 PLN02210 UDP-glucosyl transfer 100.0 6.4E-39 1.4E-43 353.9 25.7 380 189-607 7-452 (456)
12 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.4E-39 1.8E-43 354.2 26.6 402 186-609 5-470 (477)
13 PLN00414 glycosyltransferase f 100.0 4.2E-39 9.2E-44 353.8 22.0 394 189-608 3-438 (446)
14 PLN02554 UDP-glycosyltransfera 100.0 1.5E-38 3.2E-43 354.1 25.0 394 190-608 2-476 (481)
15 PLN02764 glycosyltransferase f 100.0 1.4E-38 3E-43 348.2 23.8 395 189-608 4-443 (453)
16 PLN03007 UDP-glucosyltransfera 100.0 6.4E-38 1.4E-42 349.3 28.9 397 189-607 4-477 (482)
17 PLN02555 limonoid glucosyltran 100.0 1.2E-37 2.6E-42 344.2 28.9 391 190-609 7-468 (480)
18 PLN02207 UDP-glycosyltransfera 100.0 1E-36 2.2E-41 335.5 32.2 393 189-607 2-462 (468)
19 PLN02992 coniferyl-alcohol glu 100.0 8.1E-37 1.8E-41 337.0 29.8 375 189-593 4-446 (481)
20 PLN02173 UDP-glucosyl transfer 100.0 1.8E-36 3.9E-41 332.4 31.2 385 189-608 4-446 (449)
21 PLN02152 indole-3-acetate beta 100.0 8.8E-37 1.9E-41 335.3 27.7 384 190-606 3-452 (455)
22 PLN00164 glucosyltransferase; 100.0 1.7E-36 3.8E-41 336.6 26.8 392 189-611 2-474 (480)
23 PLN02167 UDP-glycosyltransfera 100.0 1.6E-36 3.4E-41 337.3 26.4 395 190-608 3-470 (475)
24 PLN03004 UDP-glycosyltransfera 100.0 1.3E-36 2.9E-41 333.5 19.9 376 190-593 3-440 (451)
25 PLN02534 UDP-glycosyltransfera 100.0 1.2E-35 2.7E-40 328.8 27.1 396 189-608 7-484 (491)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.8E-34 4E-39 323.7 34.4 439 190-638 5-481 (496)
27 PLN03015 UDP-glucosyl transfer 100.0 8.5E-35 1.8E-39 319.4 27.4 389 190-608 3-466 (470)
28 PRK12446 undecaprenyldiphospho 100.0 4.6E-27 9.9E-32 252.5 25.2 336 191-606 2-351 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 3.8E-24 8.3E-29 228.3 26.5 338 191-608 1-355 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 1.1E-23 2.4E-28 222.8 21.6 308 191-575 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 6.2E-22 1.3E-26 210.4 21.3 305 192-580 1-317 (321)
32 PRK00726 murG undecaprenyldiph 99.9 9.7E-20 2.1E-24 195.9 28.5 339 190-609 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.8E-17 3.8E-22 177.3 26.5 328 192-602 1-349 (350)
34 TIGR01133 murG undecaprenyldip 99.8 4.7E-17 1E-21 173.9 23.5 156 443-603 179-347 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 5.1E-16 1.1E-20 169.1 17.8 334 191-606 6-384 (385)
36 PRK13609 diacylglycerol glucos 99.7 8.3E-15 1.8E-19 159.1 23.6 163 442-612 201-373 (380)
37 PRK00025 lpxB lipid-A-disaccha 99.6 7.9E-15 1.7E-19 159.0 18.7 165 442-611 185-378 (380)
38 PF03033 Glyco_transf_28: Glyc 99.6 1E-15 2.2E-20 142.1 9.7 136 193-335 1-137 (139)
39 TIGR03590 PseG pseudaminic aci 99.6 1.2E-14 2.6E-19 151.5 16.9 100 444-547 171-278 (279)
40 COG4671 Predicted glycosyl tra 99.6 4.3E-14 9.3E-19 145.4 20.0 357 187-612 6-393 (400)
41 PRK13608 diacylglycerol glucos 99.6 3.2E-13 6.9E-18 147.6 26.5 181 441-633 200-390 (391)
42 PF04101 Glyco_tran_28_C: Glyc 99.6 1.2E-16 2.7E-21 153.5 -0.9 143 445-588 1-155 (167)
43 PLN02605 monogalactosyldiacylg 99.5 6E-12 1.3E-16 137.1 25.0 163 441-608 204-379 (382)
44 TIGR03492 conserved hypothetic 99.5 3.1E-12 6.8E-17 139.8 19.8 347 199-608 5-396 (396)
45 COG3980 spsG Spore coat polysa 99.3 8.1E-11 1.7E-15 118.2 20.2 294 191-598 1-314 (318)
46 cd03814 GT1_like_2 This family 99.3 1.9E-10 4.1E-15 121.8 24.0 156 443-608 196-363 (364)
47 TIGR00236 wecB UDP-N-acetylglu 99.2 9.6E-09 2.1E-13 111.1 26.4 137 462-607 214-364 (365)
48 PF04007 DUF354: Protein of un 99.2 2.1E-08 4.5E-13 106.6 27.9 323 191-608 1-334 (335)
49 PLN02871 UDP-sulfoquinovose:DA 99.1 8.3E-08 1.8E-12 107.4 33.0 150 445-605 264-428 (465)
50 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 4.1E-09 9E-14 113.3 18.2 134 443-585 198-345 (363)
51 cd03801 GT1_YqgM_like This fam 99.1 4E-08 8.6E-13 102.7 25.2 156 443-608 198-373 (374)
52 cd03823 GT1_ExpE7_like This fa 99.0 3.8E-08 8.3E-13 103.7 23.8 151 444-607 191-356 (359)
53 cd03794 GT1_wbuB_like This fam 99.0 3.7E-08 7.9E-13 104.4 23.6 150 442-601 218-390 (394)
54 cd03808 GT1_cap1E_like This fa 99.0 9.2E-07 2E-11 92.5 32.4 152 443-604 187-357 (359)
55 cd03800 GT1_Sucrose_synthase T 99.0 9E-08 1.9E-12 103.5 25.3 151 443-603 219-395 (398)
56 cd03818 GT1_ExpC_like This fam 99.0 1.2E-07 2.5E-12 103.7 25.8 92 492-590 280-379 (396)
57 cd03816 GT1_ALG1_like This fam 99.0 7.2E-08 1.6E-12 106.3 23.7 91 493-592 294-399 (415)
58 cd03820 GT1_amsD_like This fam 99.0 1.6E-07 3.4E-12 97.8 24.1 105 491-604 233-346 (348)
59 cd03825 GT1_wcfI_like This fam 99.0 2.3E-07 5E-12 98.8 25.6 110 491-607 242-361 (365)
60 cd03817 GT1_UGDG_like This fam 98.9 1.4E-07 3.1E-12 99.6 23.0 140 443-591 201-357 (374)
61 cd04962 GT1_like_5 This family 98.9 4E-07 8.7E-12 97.6 26.6 157 444-607 197-367 (371)
62 PRK10307 putative glycosyl tra 98.9 1.7E-06 3.7E-11 95.0 30.5 153 444-607 229-404 (412)
63 cd03819 GT1_WavL_like This fam 98.9 9.7E-07 2.1E-11 93.8 26.3 139 444-590 185-344 (355)
64 PRK14089 ipid-A-disaccharide s 98.9 3.8E-08 8.1E-13 105.4 14.9 181 412-606 143-346 (347)
65 TIGR03449 mycothiol_MshA UDP-N 98.8 1.4E-06 3.1E-11 95.2 27.2 110 491-607 281-398 (405)
66 PRK05749 3-deoxy-D-manno-octul 98.8 1.1E-06 2.4E-11 97.0 23.8 99 506-609 316-422 (425)
67 cd03795 GT1_like_4 This family 98.8 1.1E-06 2.4E-11 93.2 22.2 138 443-589 190-344 (357)
68 cd03821 GT1_Bme6_like This fam 98.8 9.3E-06 2E-10 85.6 29.0 149 443-604 202-373 (375)
69 cd04951 GT1_WbdM_like This fam 98.7 2.2E-06 4.7E-11 91.1 23.9 154 443-608 187-358 (360)
70 cd03822 GT1_ecORF704_like This 98.7 5.6E-06 1.2E-10 87.6 27.0 110 491-608 245-365 (366)
71 cd03798 GT1_wlbH_like This fam 98.7 1.3E-06 2.8E-11 91.7 21.8 128 443-580 201-347 (377)
72 cd03805 GT1_ALG2_like This fam 98.7 2.1E-05 4.7E-10 85.2 30.5 91 491-589 278-376 (392)
73 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 6E-06 1.3E-10 89.6 23.2 314 191-583 1-344 (365)
74 cd03796 GT1_PIG-A_like This fa 98.6 2.6E-05 5.7E-10 85.3 27.7 110 491-609 248-370 (398)
75 cd03812 GT1_CapH_like This fam 98.6 4.9E-06 1.1E-10 88.5 21.4 134 443-588 191-342 (358)
76 TIGR02472 sucr_P_syn_N sucrose 98.6 6.4E-05 1.4E-09 83.6 30.8 111 491-608 315-438 (439)
77 cd03809 GT1_mtfB_like This fam 98.6 4.9E-06 1.1E-10 88.1 20.2 152 443-604 194-363 (365)
78 cd03807 GT1_WbnK_like This fam 98.6 1.8E-05 4E-10 83.0 24.3 152 444-607 193-363 (365)
79 cd03799 GT1_amsK_like This is 98.6 2.9E-05 6.2E-10 82.3 25.7 91 491-588 234-338 (355)
80 cd04955 GT1_like_6 This family 98.5 1.7E-05 3.8E-10 84.4 23.3 150 445-608 194-362 (363)
81 TIGR03088 stp2 sugar transfera 98.5 0.0001 2.2E-09 79.6 29.3 156 444-607 194-369 (374)
82 PRK09922 UDP-D-galactose:(gluc 98.5 1E-05 2.3E-10 87.2 21.4 157 444-608 180-357 (359)
83 cd03792 GT1_Trehalose_phosphor 98.5 6E-05 1.3E-09 81.6 26.5 108 491-607 250-368 (372)
84 TIGR02468 sucrsPsyn_pln sucros 98.5 2.6E-05 5.6E-10 93.1 25.2 162 434-605 469-665 (1050)
85 cd03802 GT1_AviGT4_like This f 98.5 5.9E-06 1.3E-10 87.0 17.9 146 445-606 172-332 (335)
86 PLN02846 digalactosyldiacylgly 98.5 1.7E-05 3.7E-10 88.0 21.4 148 446-612 230-393 (462)
87 cd05844 GT1_like_7 Glycosyltra 98.5 2.6E-05 5.7E-10 83.4 22.4 107 491-604 243-364 (367)
88 cd03811 GT1_WabH_like This fam 98.4 3.4E-05 7.3E-10 80.3 22.0 134 443-586 188-341 (353)
89 TIGR02149 glgA_Coryne glycogen 98.4 0.00035 7.5E-09 75.6 28.6 155 444-606 201-382 (388)
90 PLN02275 transferase, transfer 98.3 0.00017 3.7E-09 78.3 23.5 75 493-576 286-371 (371)
91 PLN00142 sucrose synthase 98.2 0.0001 2.3E-09 86.2 21.9 158 444-611 573-771 (815)
92 PF02684 LpxB: Lipid-A-disacch 98.2 9.4E-05 2E-09 80.0 19.8 181 411-593 151-356 (373)
93 KOG3349 Predicted glycosyltran 98.2 6.4E-06 1.4E-10 75.7 8.7 112 444-555 4-130 (170)
94 TIGR02470 sucr_synth sucrose s 98.2 0.00031 6.8E-09 82.2 24.1 156 444-609 550-746 (784)
95 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.0028 6.2E-08 68.3 28.4 107 493-605 300-416 (419)
96 PRK01021 lpxB lipid-A-disaccha 98.1 0.00045 9.8E-09 78.2 23.3 192 412-606 380-605 (608)
97 TIGR02095 glgA glycogen/starch 98.1 0.00061 1.3E-08 76.5 23.5 151 444-607 291-469 (473)
98 PRK15179 Vi polysaccharide bio 98.1 0.002 4.3E-08 75.3 28.2 109 491-607 572-690 (694)
99 TIGR03087 stp1 sugar transfera 98.0 0.0012 2.7E-08 72.1 24.2 109 492-609 279-395 (397)
100 COG0381 WecB UDP-N-acetylgluco 98.0 0.0017 3.6E-08 69.5 23.1 342 190-609 3-373 (383)
101 PLN02949 transferase, transfer 97.9 0.004 8.6E-08 69.8 26.6 153 445-608 269-454 (463)
102 PRK15484 lipopolysaccharide 1, 97.9 0.00015 3.2E-09 79.1 14.3 112 491-608 255-375 (380)
103 cd03806 GT1_ALG11_like This fa 97.9 0.00033 7.2E-09 77.4 17.0 79 491-578 303-393 (419)
104 cd04950 GT1_like_1 Glycosyltra 97.9 0.00087 1.9E-08 72.8 20.0 149 443-608 204-369 (373)
105 PF02350 Epimerase_2: UDP-N-ac 97.9 9.7E-05 2.1E-09 79.6 12.3 154 441-604 178-345 (346)
106 COG0763 LpxB Lipid A disacchar 97.9 0.0015 3.2E-08 69.7 20.1 191 415-609 158-380 (381)
107 cd01635 Glycosyltransferase_GT 97.8 0.00089 1.9E-08 65.5 16.3 49 491-539 159-215 (229)
108 PF00534 Glycos_transf_1: Glyc 97.7 7E-05 1.5E-09 71.4 7.0 136 443-589 14-170 (172)
109 PLN02501 digalactosyldiacylgly 97.7 0.0015 3.1E-08 74.9 18.3 139 457-611 556-710 (794)
110 PRK00654 glgA glycogen synthas 97.7 0.0055 1.2E-07 68.7 22.6 154 444-607 282-459 (466)
111 COG5017 Uncharacterized conser 97.6 0.00028 6.1E-09 64.0 8.8 105 446-555 2-119 (161)
112 PRK15427 colanic acid biosynth 97.6 0.00048 1E-08 75.9 12.1 111 491-608 277-403 (406)
113 cd03804 GT1_wbaZ_like This fam 97.6 0.00012 2.7E-09 78.2 7.1 135 445-589 196-339 (351)
114 PLN02316 synthase/transferase 97.5 0.031 6.7E-07 67.6 26.4 157 445-607 841-1030(1036)
115 PRK10125 putative glycosyl tra 97.5 0.058 1.3E-06 59.5 26.5 98 463-572 259-365 (405)
116 cd03791 GT1_Glycogen_synthase_ 97.5 0.013 2.9E-07 65.5 21.8 157 444-607 296-473 (476)
117 COG1817 Uncharacterized protei 97.2 0.016 3.5E-07 60.0 16.6 111 191-329 1-114 (346)
118 cd04946 GT1_AmsK_like This fam 97.1 0.0059 1.3E-07 67.3 12.9 94 492-591 288-391 (407)
119 cd04949 GT1_gtfA_like This fam 96.9 0.0068 1.5E-07 65.2 11.5 95 491-591 259-359 (372)
120 cd03813 GT1_like_3 This family 96.8 0.026 5.7E-07 63.5 15.6 109 491-606 352-472 (475)
121 PRK09814 beta-1,6-galactofuran 96.7 0.011 2.3E-07 63.4 10.8 122 473-606 190-331 (333)
122 TIGR02918 accessory Sec system 96.6 0.025 5.4E-07 64.1 13.8 157 444-608 319-497 (500)
123 PHA01630 putative group 1 glyc 96.3 0.039 8.4E-07 59.2 12.2 107 499-609 196-329 (331)
124 PF13692 Glyco_trans_1_4: Glyc 96.1 0.0043 9.3E-08 56.5 3.3 120 446-576 4-133 (135)
125 PF13844 Glyco_transf_41: Glyc 96.1 0.074 1.6E-06 59.1 13.2 160 444-608 285-464 (468)
126 PHA01633 putative glycosyl tra 96.0 0.025 5.5E-07 60.5 8.7 84 490-576 198-305 (335)
127 PRK10017 colanic acid biosynth 95.7 1.1 2.3E-05 49.8 20.5 85 505-593 323-409 (426)
128 PF13477 Glyco_trans_4_2: Glyc 95.7 0.081 1.8E-06 48.4 9.9 100 192-325 1-105 (139)
129 PRK10916 ADP-heptose:LPS hepto 95.3 1.9 4.2E-05 46.3 20.2 102 191-324 1-106 (348)
130 cd03789 GT1_LPS_heptosyltransf 95.3 1.4 3.1E-05 45.6 18.5 46 192-237 1-48 (279)
131 PRK10422 lipopolysaccharide co 95.0 4.8 0.0001 43.3 22.3 49 189-237 4-54 (352)
132 PF06722 DUF1205: Protein of u 94.9 0.016 3.5E-07 50.5 2.1 67 430-496 25-97 (97)
133 PRK14098 glycogen synthase; Pr 94.4 0.25 5.4E-06 55.9 10.9 153 444-607 307-482 (489)
134 TIGR03713 acc_sec_asp1 accesso 93.7 0.55 1.2E-05 53.5 11.7 99 493-603 409-514 (519)
135 COG0438 RfaG Glycosyltransfera 93.2 1.4 3E-05 44.8 13.0 108 492-606 256-372 (381)
136 PRK15490 Vi polysaccharide bio 93.0 1.2 2.6E-05 50.8 12.7 120 445-572 399-532 (578)
137 TIGR02195 heptsyl_trn_II lipop 92.8 15 0.00033 39.0 21.5 102 192-325 1-106 (334)
138 PF06258 Mito_fiss_Elm1: Mitoc 92.8 15 0.00033 39.0 20.6 100 455-554 161-277 (311)
139 TIGR02193 heptsyl_trn_I lipopo 92.8 6.9 0.00015 41.3 17.9 53 192-244 1-57 (319)
140 PF08660 Alg14: Oligosaccharid 92.6 1.1 2.3E-05 43.3 10.4 111 195-328 2-130 (170)
141 PF13579 Glyco_trans_4_4: Glyc 92.5 0.28 6.1E-06 44.9 6.1 39 206-244 6-46 (160)
142 TIGR02201 heptsyl_trn_III lipo 92.2 17 0.00037 38.8 20.3 106 192-326 1-110 (344)
143 PRK05579 bifunctional phosphop 92.0 8.2 0.00018 42.5 17.5 46 189-235 5-50 (399)
144 PLN02939 transferase, transfer 91.0 1.8 4E-05 52.1 11.9 153 445-606 780-962 (977)
145 PF01975 SurE: Survival protei 90.6 2.1 4.5E-05 42.4 10.1 40 191-231 1-40 (196)
146 COG3914 Spy Predicted O-linked 89.8 3.3 7.1E-05 46.8 11.7 128 445-578 431-578 (620)
147 PF12000 Glyco_trans_4_3: Gkyc 88.7 12 0.00026 36.2 13.4 94 216-329 1-98 (171)
148 PF13524 Glyco_trans_1_2: Glyc 88.2 3.6 7.7E-05 34.7 8.7 80 516-604 9-90 (92)
149 COG0859 RfaF ADP-heptose:LPS h 88.2 27 0.00059 37.3 17.5 103 190-324 1-107 (334)
150 PRK14099 glycogen synthase; Pr 87.8 2.9 6.2E-05 47.3 10.1 152 445-607 296-475 (485)
151 PF13439 Glyco_transf_4: Glyco 86.0 2.9 6.3E-05 38.8 7.7 31 200-230 11-41 (177)
152 cd03788 GT1_TPS Trehalose-6-Ph 85.1 7.9 0.00017 43.4 11.7 99 496-605 344-456 (460)
153 PF02441 Flavoprotein: Flavopr 82.8 1.4 2.9E-05 40.4 3.6 46 191-237 1-46 (129)
154 PF05159 Capsule_synth: Capsul 82.3 3.4 7.5E-05 42.6 6.9 77 459-536 140-225 (269)
155 PRK10916 ADP-heptose:LPS hepto 81.7 14 0.0003 39.7 11.5 94 192-327 182-288 (348)
156 TIGR02195 heptsyl_trn_II lipop 81.3 14 0.00029 39.3 11.2 94 192-327 176-278 (334)
157 TIGR00715 precor6x_red precorr 79.3 12 0.00027 38.5 9.6 42 191-237 1-43 (256)
158 COG0859 RfaF ADP-heptose:LPS h 79.0 20 0.00044 38.3 11.6 96 190-327 175-278 (334)
159 TIGR02400 trehalose_OtsA alpha 78.6 10 0.00022 42.5 9.5 100 496-606 339-452 (456)
160 KOG2941 Beta-1,4-mannosyltrans 77.9 36 0.00078 36.5 12.4 119 188-326 10-136 (444)
161 PF04127 DFP: DNA / pantothena 77.8 6.8 0.00015 38.3 6.9 53 190-244 3-67 (185)
162 PF02951 GSH-S_N: Prokaryotic 77.6 3.4 7.5E-05 37.4 4.4 39 191-229 1-42 (119)
163 cd02067 B12-binding B12 bindin 75.2 22 0.00048 31.6 9.1 53 192-244 1-57 (119)
164 PRK10422 lipopolysaccharide co 74.9 16 0.00035 39.2 9.5 37 192-228 185-225 (352)
165 PF01075 Glyco_transf_9: Glyco 74.5 15 0.00032 37.1 8.6 97 189-327 104-210 (247)
166 PF04464 Glyphos_transf: CDP-G 73.2 13 0.00028 40.1 8.3 132 468-606 224-369 (369)
167 TIGR00087 surE 5'/3'-nucleotid 73.2 26 0.00057 35.9 9.9 39 191-232 1-40 (244)
168 COG4370 Uncharacterized protei 71.4 4 8.7E-05 42.6 3.5 109 493-605 294-408 (412)
169 COG0552 FtsY Signal recognitio 71.2 27 0.00058 37.3 9.6 59 190-248 139-207 (340)
170 PRK06732 phosphopantothenate-- 69.7 5.7 0.00012 40.2 4.3 39 443-481 150-188 (229)
171 cd03789 GT1_LPS_heptosyltransf 69.4 39 0.00086 34.7 10.6 96 190-327 121-225 (279)
172 PRK13932 stationary phase surv 69.2 50 0.0011 34.1 10.9 40 189-231 4-44 (257)
173 TIGR02201 heptsyl_trn_III lipo 67.8 52 0.0011 35.1 11.4 99 192-327 183-287 (344)
174 PRK08057 cobalt-precorrin-6x r 67.4 32 0.0007 35.3 9.2 95 190-330 2-103 (248)
175 PRK06249 2-dehydropantoate 2-r 67.3 11 0.00023 40.0 5.9 50 188-243 3-52 (313)
176 KOG4626 O-linked N-acetylgluco 67.2 39 0.00084 38.9 10.1 137 444-585 759-912 (966)
177 COG1618 Predicted nucleotide k 65.0 12 0.00027 35.8 5.1 57 189-245 4-60 (179)
178 PRK08293 3-hydroxybutyryl-CoA 64.9 67 0.0015 33.4 11.3 32 190-226 3-34 (287)
179 cd03793 GT1_Glycogen_synthase_ 64.6 21 0.00046 41.0 7.8 79 504-583 469-557 (590)
180 PRK07313 phosphopantothenoylcy 64.5 7.8 0.00017 37.8 3.9 43 191-234 2-44 (182)
181 PRK06029 3-octaprenyl-4-hydrox 64.4 8.9 0.00019 37.5 4.2 45 190-235 1-46 (185)
182 COG0496 SurE Predicted acid ph 64.1 35 0.00075 35.1 8.5 40 191-233 1-41 (252)
183 PRK02155 ppnK NAD(+)/NADH kina 64.0 40 0.00087 35.5 9.3 99 458-580 19-121 (291)
184 PRK08305 spoVFB dipicolinate s 63.4 9.5 0.00021 37.7 4.2 46 190-235 5-50 (196)
185 PRK10964 ADP-heptose:LPS hepto 63.3 49 0.0011 34.9 10.1 28 298-327 253-280 (322)
186 PRK02261 methylaspartate mutas 63.1 15 0.00033 34.0 5.4 56 189-244 2-61 (137)
187 PRK02797 4-alpha-L-fucosyltran 62.3 39 0.00083 35.8 8.6 105 466-575 165-291 (322)
188 PF06925 MGDG_synth: Monogalac 61.4 23 0.00051 33.7 6.6 22 203-224 1-23 (169)
189 PRK13935 stationary phase surv 61.2 66 0.0014 33.2 10.0 39 191-231 1-39 (253)
190 smart00851 MGS MGS-like domain 61.2 26 0.00057 29.6 6.2 32 207-240 2-33 (90)
191 PRK13933 stationary phase surv 60.7 65 0.0014 33.2 9.9 39 191-231 1-39 (253)
192 PRK00421 murC UDP-N-acetylmura 60.5 43 0.00094 37.4 9.5 48 190-241 7-56 (461)
193 PRK05920 aromatic acid decarbo 59.6 13 0.00028 37.0 4.4 45 190-235 3-47 (204)
194 TIGR02193 heptsyl_trn_I lipopo 59.5 1.1E+02 0.0023 32.2 11.8 98 190-327 179-281 (319)
195 cd01423 MGS_CPS_I_III Methylgl 59.5 63 0.0014 28.7 8.6 47 194-243 3-49 (116)
196 COG0003 ArsA Predicted ATPase 59.0 45 0.00099 35.6 8.7 38 190-227 1-39 (322)
197 PLN03063 alpha,alpha-trehalose 57.9 21 0.00045 43.0 6.7 100 499-608 362-475 (797)
198 PRK13982 bifunctional SbtC-lik 57.1 22 0.00048 40.0 6.2 56 187-244 253-320 (475)
199 TIGR02699 archaeo_AfpA archaeo 56.7 17 0.00037 35.2 4.7 44 192-236 1-46 (174)
200 cd01424 MGS_CPS_II Methylglyox 56.5 1.1E+02 0.0024 26.7 9.6 40 202-243 10-49 (110)
201 PRK03372 ppnK inorganic polyph 56.5 57 0.0012 34.6 8.9 102 459-579 20-129 (306)
202 PRK12921 2-dehydropantoate 2-r 56.2 14 0.00029 38.7 4.3 47 191-242 1-47 (305)
203 COG1703 ArgK Putative periplas 56.0 1.2E+02 0.0027 32.0 11.0 39 188-226 49-87 (323)
204 PRK13934 stationary phase surv 55.9 1E+02 0.0023 31.9 10.4 39 191-231 1-39 (266)
205 COG1797 CobB Cobyrinic acid a, 55.9 16 0.00035 40.3 4.7 38 192-229 2-41 (451)
206 PRK00346 surE 5'(3')-nucleotid 55.9 69 0.0015 33.0 9.1 39 191-231 1-39 (250)
207 PRK06522 2-dehydropantoate 2-r 54.9 13 0.00029 38.7 3.9 45 191-240 1-46 (304)
208 TIGR00421 ubiX_pad polyprenyl 54.8 15 0.00033 35.8 4.0 43 192-235 1-43 (181)
209 TIGR02700 flavo_MJ0208 archaeo 54.2 19 0.00042 36.5 4.8 46 192-237 1-48 (234)
210 COG0541 Ffh Signal recognition 54.1 89 0.0019 34.7 10.0 64 187-250 97-170 (451)
211 TIGR02852 spore_dpaB dipicolin 53.6 18 0.00039 35.5 4.3 43 192-234 2-44 (187)
212 PF02571 CbiJ: Precorrin-6x re 53.4 67 0.0014 33.0 8.6 28 191-224 1-28 (249)
213 COG1184 GCD2 Translation initi 52.8 58 0.0013 34.4 8.1 100 123-240 93-192 (301)
214 COG0052 RpsB Ribosomal protein 52.8 1.6E+02 0.0035 30.2 10.9 35 298-332 156-192 (252)
215 PRK14099 glycogen synthase; Pr 52.3 21 0.00044 40.4 5.1 37 189-227 2-46 (485)
216 PRK14098 glycogen synthase; Pr 51.8 20 0.00043 40.6 5.0 37 189-227 4-48 (489)
217 PRK06849 hypothetical protein; 51.7 67 0.0014 35.0 8.9 36 189-228 3-38 (389)
218 PRK13011 formyltetrahydrofolat 51.5 1.8E+02 0.0039 30.5 11.7 54 188-244 87-144 (286)
219 PRK11199 tyrA bifunctional cho 51.2 92 0.002 34.0 9.8 34 189-227 97-131 (374)
220 TIGR02398 gluc_glyc_Psyn gluco 51.0 2.4E+02 0.0051 32.1 13.2 96 493-598 362-471 (487)
221 PRK11889 flhF flagellar biosyn 50.7 2E+02 0.0042 32.0 11.9 63 191-254 242-312 (436)
222 PRK02649 ppnK inorganic polyph 50.5 80 0.0017 33.5 8.9 103 459-579 16-125 (305)
223 TIGR00640 acid_CoA_mut_C methy 50.2 47 0.001 30.6 6.3 57 189-245 1-61 (132)
224 PRK08229 2-dehydropantoate 2-r 49.7 14 0.00031 39.3 3.3 48 190-242 2-49 (341)
225 TIGR02919 accessory Sec system 49.5 57 0.0012 36.4 8.0 126 459-594 291-428 (438)
226 PRK14077 pnk inorganic polypho 49.1 79 0.0017 33.2 8.5 94 457-577 22-119 (287)
227 PF02844 GARS_N: Phosphoribosy 49.0 48 0.001 29.1 5.7 22 191-217 1-22 (100)
228 PRK04539 ppnK inorganic polyph 49.0 80 0.0017 33.3 8.6 101 459-579 20-125 (296)
229 TIGR01081 mpl UDP-N-acetylmura 48.8 72 0.0016 35.5 8.8 29 192-224 1-29 (448)
230 PRK01231 ppnK inorganic polyph 48.8 99 0.0022 32.6 9.3 98 457-578 17-118 (295)
231 PRK01710 murD UDP-N-acetylmura 48.4 89 0.0019 34.9 9.4 30 190-224 14-43 (458)
232 PRK14501 putative bifunctional 47.8 97 0.0021 37.0 10.1 103 495-608 344-460 (726)
233 PRK13789 phosphoribosylamine-- 47.6 51 0.0011 36.7 7.2 35 189-228 3-38 (426)
234 PF12146 Hydrolase_4: Putative 46.8 44 0.00095 27.7 5.0 35 190-224 15-49 (79)
235 PRK09620 hypothetical protein; 46.8 24 0.00053 35.7 4.2 47 434-480 134-181 (229)
236 PF01210 NAD_Gly3P_dh_N: NAD-d 46.7 11 0.00023 35.7 1.5 32 192-228 1-32 (157)
237 PF07429 Glyco_transf_56: 4-al 46.7 1.4E+02 0.0029 32.3 9.7 125 445-576 185-331 (360)
238 PF02310 B12-binding: B12 bind 46.4 42 0.0009 29.6 5.3 35 192-226 2-36 (121)
239 COG1484 DnaC DNA replication p 45.0 27 0.00058 36.0 4.2 47 189-235 104-150 (254)
240 PRK10964 ADP-heptose:LPS hepto 45.0 30 0.00064 36.6 4.7 47 191-237 1-49 (322)
241 PF04413 Glycos_transf_N: 3-De 44.4 84 0.0018 30.7 7.4 96 192-327 23-126 (186)
242 TIGR01082 murC UDP-N-acetylmur 44.1 90 0.0019 34.8 8.6 46 192-241 1-48 (448)
243 TIGR02113 coaC_strep phosphopa 43.9 23 0.00049 34.4 3.3 42 192-234 2-43 (177)
244 cd02071 MM_CoA_mut_B12_BD meth 43.9 70 0.0015 28.7 6.4 54 192-245 1-58 (122)
245 PLN02939 transferase, transfer 43.7 40 0.00087 41.1 5.9 43 186-228 477-525 (977)
246 KOG0853 Glycosyltransferase [C 43.1 32 0.00069 38.8 4.6 87 521-612 381-473 (495)
247 TIGR01285 nifN nitrogenase mol 42.0 1.5E+02 0.0033 33.0 9.9 25 297-324 372-396 (432)
248 cd01980 Chlide_reductase_Y Chl 41.9 1.8E+02 0.0038 32.2 10.4 26 297-325 349-374 (416)
249 PRK01077 cobyrinic acid a,c-di 40.9 2.6E+02 0.0056 31.3 11.6 34 192-225 5-39 (451)
250 PRK06027 purU formyltetrahydro 40.4 1.3E+02 0.0029 31.5 8.6 56 187-245 86-145 (286)
251 PRK13869 plasmid-partitioning 40.2 3.6E+02 0.0078 29.7 12.4 36 189-224 119-156 (405)
252 TIGR01425 SRP54_euk signal rec 39.6 1.6E+02 0.0034 32.9 9.4 54 191-244 101-162 (429)
253 PRK04885 ppnK inorganic polyph 39.6 37 0.00081 35.2 4.3 54 508-578 34-93 (265)
254 PF07991 IlvN: Acetohydroxy ac 39.5 18 0.00039 34.6 1.8 50 190-244 4-55 (165)
255 PF01012 ETF: Electron transfe 39.5 1.2E+02 0.0026 28.5 7.5 106 192-327 1-122 (164)
256 COG1893 ApbA Ketopantoate redu 39.1 36 0.00078 36.1 4.2 50 191-245 1-50 (307)
257 PRK02006 murD UDP-N-acetylmura 39.0 1.6E+02 0.0034 33.4 9.6 29 191-224 8-36 (498)
258 PF02702 KdpD: Osmosensitive K 38.5 63 0.0014 32.2 5.3 55 189-243 4-61 (211)
259 PRK13931 stationary phase surv 38.4 2.4E+02 0.0052 29.2 9.9 39 191-231 1-43 (261)
260 PRK03378 ppnK inorganic polyph 38.3 1.7E+02 0.0036 30.8 9.0 98 459-580 20-121 (292)
261 KOG0023 Alcohol dehydrogenase, 38.2 1.1E+02 0.0023 32.7 7.3 50 189-243 181-232 (360)
262 COG0771 MurD UDP-N-acetylmuram 38.0 1.7E+02 0.0036 32.9 9.3 31 190-225 7-37 (448)
263 PF02374 ArsA_ATPase: Anion-tr 37.9 53 0.0012 34.7 5.2 40 191-230 1-41 (305)
264 TIGR01501 MthylAspMutase methy 37.9 58 0.0013 30.1 4.8 54 191-244 2-59 (134)
265 PRK00141 murD UDP-N-acetylmura 37.8 1.2E+02 0.0025 34.2 8.3 48 190-242 15-64 (473)
266 KOG0780 Signal recognition par 37.8 2.1E+02 0.0045 31.5 9.4 52 192-243 103-162 (483)
267 TIGR00379 cobB cobyrinic acid 37.6 3.5E+02 0.0076 30.3 12.0 33 193-225 2-35 (449)
268 PF01075 Glyco_transf_9: Glyco 37.5 21 0.00046 35.8 2.1 94 441-535 103-208 (247)
269 COG2099 CobK Precorrin-6x redu 37.5 2E+02 0.0044 29.6 9.0 97 190-331 2-105 (257)
270 PRK05784 phosphoribosylamine-- 37.4 1.3E+02 0.0027 34.2 8.4 31 191-226 1-33 (486)
271 KOG1111 N-acetylglucosaminyltr 37.4 3.2E+02 0.007 29.7 10.7 80 455-535 207-301 (426)
272 PRK02910 light-independent pro 37.2 2.3E+02 0.0049 32.5 10.5 27 297-326 361-387 (519)
273 TIGR01283 nifE nitrogenase mol 37.2 3E+02 0.0064 30.9 11.3 26 297-325 394-419 (456)
274 PF00448 SRP54: SRP54-type pro 37.0 2.4E+02 0.0052 27.7 9.4 53 192-244 2-63 (196)
275 PRK04148 hypothetical protein; 36.8 82 0.0018 29.2 5.6 46 190-241 17-63 (134)
276 TIGR00521 coaBC_dfp phosphopan 36.6 41 0.00089 37.0 4.2 46 190-236 3-48 (390)
277 PF05693 Glycogen_syn: Glycoge 36.5 26 0.00057 40.3 2.7 89 502-591 462-566 (633)
278 TIGR02990 ectoine_eutA ectoine 36.2 1.5E+02 0.0033 30.2 8.0 42 203-244 104-152 (239)
279 PRK14106 murD UDP-N-acetylmura 35.8 1.9E+02 0.0041 32.1 9.5 20 208-227 18-37 (450)
280 cd02070 corrinoid_protein_B12- 34.9 66 0.0014 31.7 5.1 56 189-244 81-140 (201)
281 cd01977 Nitrogenase_VFe_alpha 34.4 2.2E+02 0.0049 31.4 9.7 25 298-325 358-382 (415)
282 PRK14619 NAD(P)H-dependent gly 34.3 51 0.0011 34.7 4.4 51 189-244 3-56 (308)
283 TIGR00745 apbA_panE 2-dehydrop 34.3 44 0.00095 34.5 3.9 35 209-243 5-39 (293)
284 PLN02935 Bifunctional NADH kin 34.0 1.6E+02 0.0035 33.4 8.3 54 507-578 260-318 (508)
285 COG0287 TyrA Prephenate dehydr 33.9 2.1E+02 0.0046 29.9 8.8 37 190-231 3-39 (279)
286 PRK03501 ppnK inorganic polyph 33.3 1.5E+02 0.0033 30.7 7.6 55 508-578 38-97 (264)
287 COG2327 WcaK Polysaccharide py 33.1 1.5E+02 0.0033 32.4 7.8 86 493-583 266-357 (385)
288 PRK14573 bifunctional D-alanyl 32.9 1.8E+02 0.0039 35.2 9.3 47 191-241 5-53 (809)
289 COG1748 LYS9 Saccharopine dehy 32.9 1.8E+02 0.0039 32.0 8.3 50 190-244 1-55 (389)
290 COG0059 IlvC Ketol-acid reduct 32.8 55 0.0012 34.6 4.1 51 189-244 17-69 (338)
291 PF10649 DUF2478: Protein of u 32.6 4.4E+02 0.0096 25.1 10.0 34 195-228 3-37 (159)
292 TIGR00877 purD phosphoribosyla 32.6 2.2E+02 0.0047 31.3 9.3 34 191-229 1-34 (423)
293 PF01380 SIS: SIS domain SIS d 32.5 1.3E+02 0.0027 26.6 6.2 46 198-243 60-105 (131)
294 PRK11519 tyrosine kinase; Prov 32.4 4.3E+02 0.0094 31.5 12.2 35 191-225 526-562 (719)
295 PRK06395 phosphoribosylamine-- 32.4 2.3E+02 0.005 31.6 9.4 31 190-225 2-32 (435)
296 PRK01390 murD UDP-N-acetylmura 32.4 1.4E+02 0.0029 33.4 7.7 29 191-224 10-38 (460)
297 PRK14478 nitrogenase molybdenu 32.0 3.7E+02 0.008 30.3 11.0 25 297-324 392-416 (475)
298 PRK08535 translation initiatio 31.9 2E+02 0.0043 30.5 8.4 27 208-234 161-187 (310)
299 COG2910 Putative NADH-flavin r 31.8 78 0.0017 31.1 4.7 36 191-230 1-36 (211)
300 TIGR02370 pyl_corrinoid methyl 31.5 1.1E+02 0.0025 30.0 6.1 55 190-244 84-142 (197)
301 PRK12446 undecaprenyldiphospho 31.4 1.9E+02 0.0042 31.1 8.4 87 445-535 4-120 (352)
302 TIGR02015 BchY chlorophyllide 31.4 3E+02 0.0064 30.6 10.0 26 297-325 354-379 (422)
303 PF02558 ApbA: Ketopantoate re 31.3 41 0.00089 31.0 2.8 37 208-244 11-47 (151)
304 TIGR00959 ffh signal recogniti 31.2 2.9E+02 0.0063 30.8 9.8 53 192-244 101-162 (428)
305 PF13460 NAD_binding_10: NADH( 31.2 1.1E+02 0.0025 28.7 6.0 47 195-244 1-47 (183)
306 TIGR02114 coaB_strep phosphopa 31.0 47 0.001 33.5 3.3 48 434-481 139-187 (227)
307 PF09001 DUF1890: Domain of un 30.9 35 0.00076 31.6 2.1 34 204-237 13-46 (139)
308 PRK07066 3-hydroxybutyryl-CoA 30.7 5E+02 0.011 27.7 11.2 31 191-226 8-38 (321)
309 COG2185 Sbm Methylmalonyl-CoA 30.7 90 0.002 29.2 4.8 39 188-226 10-48 (143)
310 CHL00076 chlB photochlorophyll 30.6 6.1E+02 0.013 28.9 12.6 27 297-326 373-399 (513)
311 PRK07417 arogenate dehydrogena 30.5 2.8E+02 0.0061 28.6 9.2 32 191-227 1-32 (279)
312 PRK01911 ppnK inorganic polyph 30.4 75 0.0016 33.5 4.8 102 459-579 15-121 (292)
313 COG4394 Uncharacterized protei 29.8 3.7E+02 0.0079 28.4 9.3 107 492-608 237-369 (370)
314 PRK03708 ppnK inorganic polyph 29.8 62 0.0013 33.8 4.0 96 458-579 14-113 (277)
315 PRK09260 3-hydroxybutyryl-CoA 29.5 3.6E+02 0.0078 27.9 9.9 30 192-226 3-32 (288)
316 TIGR00524 eIF-2B_rel eIF-2B al 29.4 1.9E+02 0.0041 30.6 7.7 37 208-244 168-204 (303)
317 PRK05808 3-hydroxybutyryl-CoA 29.4 3.9E+02 0.0085 27.5 10.1 30 191-225 4-33 (282)
318 cd01974 Nitrogenase_MoFe_beta 29.3 4.6E+02 0.0099 29.1 11.1 26 297-325 376-401 (435)
319 TIGR01862 N2-ase-Ialpha nitrog 29.2 4E+02 0.0086 29.8 10.6 26 297-325 386-411 (443)
320 KOG2380 Prephenate dehydrogena 29.1 57 0.0012 34.9 3.6 55 185-244 47-101 (480)
321 PRK05720 mtnA methylthioribose 28.7 2.5E+02 0.0053 30.4 8.5 52 193-244 181-232 (344)
322 COG0240 GpsA Glycerol-3-phosph 28.6 64 0.0014 34.5 3.9 33 190-227 1-33 (329)
323 PRK05647 purN phosphoribosylgl 28.6 1.4E+02 0.003 29.6 6.1 52 190-244 1-58 (200)
324 PRK12311 rpsB 30S ribosomal pr 28.4 7.6E+02 0.016 26.5 11.9 35 298-332 152-188 (326)
325 PRK05772 translation initiatio 28.3 2.9E+02 0.0064 30.1 8.9 21 307-327 268-288 (363)
326 PRK00885 phosphoribosylamine-- 28.2 1.3E+02 0.0028 33.2 6.5 31 191-226 1-32 (420)
327 TIGR00640 acid_CoA_mut_C methy 28.1 2.1E+02 0.0046 26.2 6.9 64 190-253 53-122 (132)
328 cd01968 Nitrogenase_NifE_I Nit 28.1 4.2E+02 0.0091 29.1 10.5 26 297-325 355-380 (410)
329 PF01008 IF-2B: Initiation fac 27.8 1.8E+02 0.004 30.0 7.2 92 134-244 91-183 (282)
330 COG0297 GlgA Glycogen synthase 27.8 4.8E+02 0.01 29.6 10.9 125 445-576 295-440 (487)
331 PRK05234 mgsA methylglyoxal sy 27.6 1.7E+02 0.0037 27.3 6.2 51 189-243 3-56 (142)
332 PRK08334 translation initiatio 27.5 3E+02 0.0064 29.9 8.7 53 192-244 193-245 (356)
333 TIGR00511 ribulose_e2b2 ribose 27.4 2.6E+02 0.0056 29.6 8.2 83 134-234 99-182 (301)
334 PRK01185 ppnK inorganic polyph 27.4 96 0.0021 32.3 4.9 54 509-579 52-106 (271)
335 PRK06371 translation initiatio 27.0 3E+02 0.0065 29.5 8.6 21 307-327 237-257 (329)
336 PRK02231 ppnK inorganic polyph 26.9 3.9E+02 0.0085 27.8 9.4 90 464-577 4-97 (272)
337 PRK12743 oxidoreductase; Provi 26.9 4.1E+02 0.0089 26.5 9.6 33 191-226 2-34 (256)
338 cd03466 Nitrogenase_NifN_2 Nit 26.9 4E+02 0.0088 29.5 10.2 26 297-325 371-396 (429)
339 PRK10867 signal recognition pa 26.8 2E+02 0.0044 32.0 7.7 55 190-244 100-163 (433)
340 PRK01372 ddl D-alanine--D-alan 26.6 1.4E+02 0.003 31.0 6.2 50 190-239 4-58 (304)
341 TIGR00512 salvage_mtnA S-methy 26.6 3E+02 0.0065 29.6 8.6 21 307-327 247-267 (331)
342 PRK02645 ppnK inorganic polyph 26.4 2.4E+02 0.0052 29.8 7.9 68 459-537 18-89 (305)
343 PF02056 Glyco_hydro_4: Family 26.3 1.8E+02 0.0039 28.5 6.3 126 191-329 29-170 (183)
344 PRK14477 bifunctional nitrogen 26.2 5.1E+02 0.011 31.9 11.6 27 297-326 388-414 (917)
345 PRK02318 mannitol-1-phosphate 26.1 53 0.0012 35.9 2.9 42 191-238 1-45 (381)
346 cd01017 AdcA Metal binding pro 25.9 6.4E+02 0.014 26.0 10.9 81 218-328 170-252 (282)
347 TIGR01380 glut_syn glutathione 25.6 98 0.0021 32.8 4.8 39 191-229 1-42 (312)
348 PRK13982 bifunctional SbtC-lik 25.6 83 0.0018 35.5 4.3 47 189-236 69-115 (475)
349 PRK03803 murD UDP-N-acetylmura 25.5 3.5E+02 0.0076 30.0 9.4 28 192-224 8-35 (448)
350 PF00551 Formyl_trans_N: Formy 25.5 1.5E+02 0.0032 28.6 5.7 34 191-227 1-37 (181)
351 COG3660 Predicted nucleoside-d 25.3 2.1E+02 0.0046 29.7 6.7 74 461-535 185-271 (329)
352 cd01976 Nitrogenase_MoFe_alpha 25.2 1.3E+02 0.0029 33.3 5.9 26 297-325 368-393 (421)
353 PRK14075 pnk inorganic polypho 25.1 1.2E+02 0.0026 31.2 5.2 84 457-578 10-94 (256)
354 PRK08335 translation initiatio 25.1 2E+02 0.0043 30.1 6.7 28 206-233 148-175 (275)
355 cd08170 GlyDH Glycerol dehydro 24.9 4.7E+02 0.01 28.0 10.0 34 297-330 76-112 (351)
356 PRK06731 flhF flagellar biosyn 24.7 8E+02 0.017 25.5 12.2 140 189-329 74-248 (270)
357 TIGR00460 fmt methionyl-tRNA f 24.7 1.1E+02 0.0024 32.5 4.9 48 191-243 1-62 (313)
358 PLN02712 arogenate dehydrogena 24.7 1.3E+02 0.0028 35.5 6.0 51 185-240 47-97 (667)
359 PRK06130 3-hydroxybutyryl-CoA 24.6 5.4E+02 0.012 26.8 10.3 31 191-226 5-35 (311)
360 CHL00194 ycf39 Ycf39; Provisio 24.3 2.6E+02 0.0056 29.2 7.8 49 191-243 1-50 (317)
361 PRK09444 pntB pyridine nucleot 24.3 92 0.002 34.7 4.3 37 191-229 307-348 (462)
362 PRK08265 short chain dehydroge 24.1 3.3E+02 0.0072 27.3 8.3 32 192-226 7-38 (261)
363 COG2084 MmsB 3-hydroxyisobutyr 24.0 95 0.0021 32.6 4.2 46 191-241 1-48 (286)
364 PF08323 Glyco_transf_5: Starc 23.9 61 0.0013 33.0 2.7 22 207-228 22-43 (245)
365 PF00731 AIRC: AIR carboxylase 23.8 2.2E+02 0.0049 26.9 6.2 135 445-593 2-148 (150)
366 TIGR01830 3oxo_ACP_reduc 3-oxo 23.8 3.3E+02 0.0071 26.5 8.0 28 198-227 4-31 (239)
367 cd00861 ProRS_anticodon_short 23.8 1.3E+02 0.0028 25.1 4.3 54 191-244 2-61 (94)
368 CHL00072 chlL photochlorophyll 23.8 1.1E+02 0.0024 32.0 4.7 35 191-225 1-35 (290)
369 COG2099 CobK Precorrin-6x redu 23.7 1.6E+02 0.0034 30.4 5.5 29 507-535 194-228 (257)
370 PRK05708 2-dehydropantoate 2-r 23.7 89 0.0019 32.9 4.0 47 190-241 2-50 (305)
371 cd01018 ZntC Metal binding pro 23.5 7.7E+02 0.017 25.2 10.9 76 219-326 170-247 (266)
372 COG3349 Uncharacterized conser 23.2 69 0.0015 36.1 3.1 29 191-224 1-29 (485)
373 PRK03369 murD UDP-N-acetylmura 23.0 3.4E+02 0.0074 30.6 8.8 30 190-224 12-41 (488)
374 cd05017 SIS_PGI_PMI_1 The memb 22.8 2.9E+02 0.0063 24.4 6.7 53 193-246 46-99 (119)
375 PHA02542 41 41 helicase; Provi 22.7 8.4E+02 0.018 27.6 11.7 38 193-230 193-230 (473)
376 PRK13010 purU formyltetrahydro 22.6 6.1E+02 0.013 26.6 9.9 54 189-245 92-149 (289)
377 CHL00175 minD septum-site dete 22.6 1.6E+02 0.0034 30.4 5.5 35 190-224 14-50 (281)
378 COG0151 PurD Phosphoribosylami 22.5 2.3E+02 0.0049 31.4 6.7 24 191-219 1-24 (428)
379 TIGR01278 DPOR_BchB light-inde 22.5 9.5E+02 0.02 27.3 12.2 26 297-325 363-388 (511)
380 PRK07523 gluconate 5-dehydroge 22.4 4.1E+02 0.0088 26.4 8.5 28 198-227 16-43 (255)
381 PRK00771 signal recognition pa 22.3 2E+02 0.0043 32.2 6.5 55 189-243 94-156 (437)
382 TIGR01284 alt_nitrog_alph nitr 22.3 3.6E+02 0.0078 30.3 8.7 26 297-325 394-419 (457)
383 PF01695 IstB_IS21: IstB-like 22.3 1.2E+02 0.0026 29.3 4.3 46 190-235 47-92 (178)
384 COG1154 Dxs Deoxyxylulose-5-ph 22.2 4.5E+02 0.0098 30.5 9.2 109 439-576 498-622 (627)
385 cd02069 methionine_synthase_B1 22.2 1.6E+02 0.0034 29.5 5.2 56 189-244 87-146 (213)
386 cd01965 Nitrogenase_MoFe_beta_ 21.9 4.7E+02 0.01 28.9 9.5 25 297-324 370-394 (428)
387 PRK04308 murD UDP-N-acetylmura 21.8 7.1E+02 0.015 27.5 10.9 30 191-225 6-35 (445)
388 PRK12342 hypothetical protein; 21.6 2.4E+02 0.0052 29.1 6.5 30 298-327 109-144 (254)
389 TIGR00639 PurN phosphoribosylg 21.6 6.3E+02 0.014 24.6 9.3 51 191-244 1-57 (190)
390 PF02142 MGS: MGS-like domain 21.5 82 0.0018 26.9 2.7 36 207-244 2-37 (95)
391 COG1938 Archaeal enzymes of AT 21.5 8.9E+02 0.019 24.8 11.6 74 459-535 93-175 (244)
392 cd02072 Glm_B12_BD B12 binding 21.3 1.6E+02 0.0034 27.1 4.5 53 192-244 1-57 (128)
393 cd01422 MGS Methylglyoxal synt 21.2 5.9E+02 0.013 22.6 8.3 41 201-243 8-51 (115)
394 PRK14476 nitrogenase molybdenu 21.1 1.1E+03 0.024 26.4 12.2 24 298-324 371-394 (455)
395 PRK09496 trkA potassium transp 21.1 1.7E+02 0.0037 32.3 5.8 94 189-325 230-328 (453)
396 KOG3339 Predicted glycosyltran 20.8 5.5E+02 0.012 25.3 8.2 28 189-217 37-64 (211)
397 PRK00207 sulfur transfer compl 20.8 1.5E+02 0.0033 27.0 4.4 37 191-227 1-41 (128)
398 PLN02545 3-hydroxybutyryl-CoA 20.8 7.7E+02 0.017 25.4 10.4 31 191-226 5-35 (295)
399 PRK06372 translation initiatio 20.7 2.6E+02 0.0057 28.8 6.5 23 208-230 124-146 (253)
400 PRK14076 pnk inorganic polypho 20.7 1.3E+02 0.0027 34.9 4.8 54 509-579 348-405 (569)
401 PF01297 TroA: Periplasmic sol 20.6 3.3E+02 0.0072 27.6 7.4 81 218-328 149-231 (256)
402 KOG0832 Mitochondrial/chloropl 20.6 7.8E+02 0.017 25.1 9.4 36 200-235 90-126 (251)
403 TIGR01832 kduD 2-deoxy-D-gluco 20.5 4.6E+02 0.01 25.8 8.4 33 192-227 6-38 (248)
404 PRK12481 2-deoxy-D-gluconate 3 20.4 5.5E+02 0.012 25.6 9.0 32 192-226 9-40 (251)
405 PRK14620 NAD(P)H-dependent gly 20.4 76 0.0016 33.6 2.7 40 191-235 1-41 (326)
406 PRK09423 gldA glycerol dehydro 20.3 7.1E+02 0.015 26.8 10.3 33 297-329 83-118 (366)
407 PRK14618 NAD(P)H-dependent gly 20.3 83 0.0018 33.4 3.0 33 190-227 4-36 (328)
408 PRK15469 ghrA bifunctional gly 20.2 3.4E+02 0.0074 28.8 7.5 70 443-526 137-207 (312)
409 cd02032 Bchl_like This family 20.1 1.4E+02 0.003 30.5 4.5 34 191-224 1-34 (267)
410 PF03446 NAD_binding_2: NAD bi 20.0 70 0.0015 30.2 2.1 31 190-225 1-31 (163)
No 1
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.4e-50 Score=438.95 Aligned_cols=394 Identities=39% Similarity=0.734 Sum_probs=308.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCC-cch--
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSG-PGE-- 267 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~-~~~-- 267 (646)
|||+|++.|+.||++|+++||++|+++||+|+|+|++.++..++..|++|++++.+............. .+.. ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAG-LLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhccc-ccccchHHHH
Confidence 899999999999999999999999999999999999999999999999999998765433221111000 0000 000
Q ss_pred --HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCc
Q 006412 268 --ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQ 345 (646)
Q Consensus 268 --i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~ 345 (646)
.........+++..++..+ +.++||+||+|++++++..+|+++|||++.+.+.|+.+...++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--------~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----- 146 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAA--------RDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL----- 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--------cccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc-----
Confidence 1111222333333333332 3568999999999999999999999999999999988766666665
Q ss_pred ccchhHHHHHHHHH-HHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceecc
Q 006412 346 SAGYWLSYIIVDLL-IWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLN 424 (646)
Q Consensus 346 ~~~~~ls~~~~~~~-~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~ 424 (646)
...+..++...... .........+.+|+ .+|+++..... ....+..+.+++.+.+.+.+|+++..++|+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gl~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (401)
T cd03784 147 GRANLRLYALLEAELWQDLLGAWLRARRR-RLGLPPLSLLD-----GSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRD 220 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCcccc-----cCCCcEEEecCcccCCCCCCccccCcEeCCCCCC
Confidence 11122233222222 22334555666666 89988754311 1233556677888888888999999999866655
Q ss_pred CCCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcc
Q 006412 425 LGSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHD 504 (646)
Q Consensus 425 ~~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~ 504 (646)
.......+.++..|++.++++|||++||+...+++.+++.++++++..+.++|+..|+..... ...++||++.+|+||.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~-~~~~~~v~~~~~~p~~ 299 (401)
T cd03784 221 VPYNGPPPPELWLFLAAGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA-EDLPDNVRVVDFVPHD 299 (401)
T ss_pred CCCCCCCCHHHHHHHhCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc-cCCCCceEEeCCCCHH
Confidence 444455677888999988999999999998777888999999999999999999998865432 3568999999999999
Q ss_pred cccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHHHHHHH
Q 006412 505 WLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPEVKSRA 584 (646)
Q Consensus 505 ~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~~r~~A 584 (646)
+++++||+||||||+||++|++++|+|+|++|++.||+.||+++++.|+|+ .+...+++.++|.++|++++++++++++
T Consensus 300 ~ll~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~~~~~~ 378 (401)
T cd03784 300 WLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPPSRRRA 378 (401)
T ss_pred HHhhhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 6777778999999999999977788889
Q ss_pred HHHHHHhhcCCcHHHHHHHHHH
Q 006412 585 MELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 585 ~~la~~l~~~~G~~~Av~~ie~ 606 (646)
+++++.++..+|.+++++.|++
T Consensus 379 ~~~~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 379 AALLRRIREEDGVPSAADVIER 400 (401)
T ss_pred HHHHHHHHhccCHHHHHHHHhh
Confidence 9999999999999999999986
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.4e-49 Score=443.91 Aligned_cols=441 Identities=12% Similarity=0.096 Sum_probs=310.2
Q ss_pred ceEEEE-ecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEEcCCChHHHHHHHhhcCCCCC--CCc
Q 006412 191 LNIAIL-VVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIP--SGP 265 (646)
Q Consensus 191 mrIvi~-~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~--~~~ 265 (646)
.||+.+ |..+.+|+.-+-+|+++|++|||+||++++... .......+++.+.++...+...+.+.+...... ...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVA 100 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhhh
Confidence 458755 778999999999999999999999999977531 111134567777775443333322221100000 000
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCc-cccCC--CCcccEEEECCCccchHHHHHHh-CCCEEEEEccCCC----CCCC-C
Q 006412 266 GEISIQRKQIKAIIESLLPACTDPD-IETGV--PFRSQAIIANPPAYGHAHVAEAL-GVPIHIFFTMPWT----PTYE-F 336 (646)
Q Consensus 266 ~~i~~~~~~~~~ll~~l~~~~~~~d-~~~~~--~~~pD~IIad~~~~~~~~vA~~l-GIP~v~~~t~p~~----~~~~-~ 336 (646)
............+...|-..+.... .+.++ ..++|+||+|++..++..+|+.+ ++|++.+++.... ...+ .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg~ 180 (507)
T PHA03392 101 DSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGAV 180 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhccC
Confidence 0000001111111222222222222 12222 56799999999999998899999 9998887764332 1234 7
Q ss_pred CCCCCCCCcccc-------------hhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCC
Q 006412 337 PHPLARVPQSAG-------------YWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPH 403 (646)
Q Consensus 337 P~pl~~ip~~~~-------------~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~ 403 (646)
|.+++++|.... |++.+. .....+..+....+++.++.++.. .+.+.... ......+..+..
T Consensus 181 p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~-~~~~~~~~~~~~~~~l~~~~f~~~-~~~~~~l~---~~~~l~lvns~~ 255 (507)
T PHA03392 181 SRHPVYYPNLWRSKFGNLNVWETINEIYTEL-RLYNEFSLLADEQNKLLKQQFGPD-TPTIRELR---NRVQLLFVNVHP 255 (507)
T ss_pred CCCCeeeCCcccCCCCCCCHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHcCCC-CCCHHHHH---hCCcEEEEecCc
Confidence 788888775321 222111 111111111133455544445531 11111111 122222333333
Q ss_pred CCCCCCCCCCcEEEeCceeccCCCCCCCchhHHHhHhcCC-CcEEEEcCCCCC--CChHHHHHHHHHHHHhcCCeEEEEe
Q 006412 404 LVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWIQRGP-EPIYIGFGSMPL--EDPKKTTEIILEALRDTGQRGIIDR 480 (646)
Q Consensus 404 l~p~p~d~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~-pvVyVsfGS~~~--~~p~~l~~~i~~Al~~~g~r~Iv~~ 480 (646)
.+..|++|++++.++|++..+.....+.++++.+|+++++ ++|||||||... ..+.++.+.+++|+++.++++||..
T Consensus 256 ~~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~ 335 (507)
T PHA03392 256 VFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKY 335 (507)
T ss_pred cccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 4556788999999999987643233456889999998876 699999999864 3467788999999999999999886
Q ss_pred cCCCCCCCCCCCCcEEEeccCCccccc--ccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCc
Q 006412 481 GWGDLGKITEVPDNIFLLEDCPHDWLF--PQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPI 558 (646)
Q Consensus 481 G~~~~~~l~~~p~nV~i~~~vPq~~Ll--~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i 558 (646)
+..... ..+|+||++.+|+||.+++ ++|++||||||+||++||+++|||+|++|+++||+.||++++++|+|+ .+
T Consensus 336 ~~~~~~--~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~-~l 412 (507)
T PHA03392 336 DGEVEA--INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGR-AL 412 (507)
T ss_pred CCCcCc--ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEE-Ee
Confidence 543221 2578999999999999995 889999999999999999999999999999999999999999999998 68
Q ss_pred CCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCHHHHHHHH
Q 006412 559 PISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENED--GVAAAVDAFHRHLPDE-IPMPSSLPEKDDGPDPLQWFFIQ 634 (646)
Q Consensus 559 ~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~--G~~~Av~~ie~~L~~~-~~~~~~~~~~~~~~~~~~~~~ld 634 (646)
+..++++++|.+||+++| |++|+++|+++++.+++.. +.++|++++|..++++ +. +|+++.+.+++|+|||+||
T Consensus 413 ~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g~--~~lr~~~~~l~~~qy~~lD 490 (507)
T PHA03392 413 DTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGN--TSLKTKAANVSYSDYFMSY 490 (507)
T ss_pred ccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCc--ccccccccCCCHHHHHHHH
Confidence 888999999999999999 9999999999999999874 8999999999999988 76 6899999999999999999
Q ss_pred HHHHHhh
Q 006412 635 IGNWCCQ 641 (646)
Q Consensus 635 v~~~~~~ 641 (646)
|++++++
T Consensus 491 v~~~~~~ 497 (507)
T PHA03392 491 ILVPLVT 497 (507)
T ss_pred HHHHHHH
Confidence 9988873
No 3
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=6.2e-49 Score=441.51 Aligned_cols=434 Identities=20% Similarity=0.263 Sum_probs=223.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhh--hhCCceEE--EcCCChHHHHHHHhh--cCCCC-CCC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFV--RSAGVDFF--PLGGDPRVLAGYMAR--NKGLI-PSG 264 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v--~~~Gl~f~--~i~~~p~~l~~~~~~--~~~~~-~~~ 264 (646)
||+++|. +.+|+.++.+|+++|++|||+||++++......- ....+++. +.+....+....... ...+. ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 6777775 7799999999999999999999999875422211 23344443 333221111110000 00000 000
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCC----c-cccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEcc-C--CC-CC-C
Q 006412 265 PGEISIQRKQIKAIIESLLPACTDP----D-IETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTM-P--WT-PT-Y 334 (646)
Q Consensus 265 ~~~i~~~~~~~~~ll~~l~~~~~~~----d-~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~-p--~~-~~-~ 334 (646)
...+......+..+.......|... . +...+..++|++|+|.+..|+..+|+.+|+|.+.+.+. + +. .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~ 160 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSG 160 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhcc
Confidence 0011111222222333334455321 1 22234457999999998888899999999999776432 1 11 11 1
Q ss_pred CCCCCCCCCCccc-------------chhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccC
Q 006412 335 EFPHPLARVPQSA-------------GYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWS 401 (646)
Q Consensus 335 ~~P~pl~~ip~~~-------------~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~s 401 (646)
+.|.+++++|... .|++.+............. .+++.++..+.+ ....... ......+..+
T Consensus 161 g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~----~~~~l~l~ns 234 (500)
T PF00201_consen 161 GVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP-QDKLYKKYFGFP-FSFRELL----SNASLVLINS 234 (500)
T ss_dssp CCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS--TTS-EEESS-G-GGCHHHH----HHHHHCCSST
T ss_pred CCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh-HHHHHhhhcccc-cccHHHH----HHHHHHhhhc
Confidence 4566666665421 2333333222222211111 222222111111 1110000 0001111111
Q ss_pred CCCCCCCCCCCCcEEEeCceeccCCCCCCCchhHHHhHhc--CCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEE
Q 006412 402 PHLVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWIQR--GPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIID 479 (646)
Q Consensus 402 p~l~p~p~d~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~--~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~ 479 (646)
...+..|++.+|++..+|.+... ...+.+.++..|+++ .+++|||||||+....+++..+.+++++++.++++||.
T Consensus 235 ~~~ld~prp~~p~v~~vGgl~~~--~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~ 312 (500)
T PF00201_consen 235 HPSLDFPRPLLPNVVEVGGLHIK--PAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWK 312 (500)
T ss_dssp EEE----HHHHCTSTTGCGC-S------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEE
T ss_pred cccCcCCcchhhcccccCccccc--cccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccc
Confidence 11123355567888888987443 345678899999987 45799999999987788888889999999999999987
Q ss_pred ecCCCCCCCCCCCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCC
Q 006412 480 RGWGDLGKITEVPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAP 557 (646)
Q Consensus 480 ~G~~~~~~l~~~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~ 557 (646)
... .....+++|+++.+|+||.+| |+++++||||||+||+.||+++|||+|++|+++||+.||+++++.|+|+ .
T Consensus 313 ~~~---~~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~-~ 388 (500)
T PF00201_consen 313 YEG---EPPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGV-V 388 (500)
T ss_dssp ETC---SHGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEE-E
T ss_pred ccc---cccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEE-E
Confidence 543 222456899999999999999 6899999999999999999999999999999999999999999999998 7
Q ss_pred cCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 006412 558 IPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENE--DGVAAAVDAFHRHLPDEIPMPSSLPEKDDGPDPLQWFFIQ 634 (646)
Q Consensus 558 i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~--~G~~~Av~~ie~~L~~~~~~~~~~~~~~~~~~~~~~~~ld 634 (646)
++..++|.++|.++|+++| |++|+++|+++++.+++. .+.++|+.++|..++.++. +||++.+.+|+|||||+||
T Consensus 389 l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~--~~l~~~~~~l~~~~~~~lD 466 (500)
T PF00201_consen 389 LDKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGGA--PHLRSPARDLSFYQYYLLD 466 (500)
T ss_dssp EGGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--------------------------------------------
T ss_pred EEecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC--cccCChhhcCCHHHHHHHH
Confidence 8889999999999999999 999999999999999886 6899999999999988775 5899999999999999999
Q ss_pred HHHHHh
Q 006412 635 IGNWCC 640 (646)
Q Consensus 635 v~~~~~ 640 (646)
|++|+.
T Consensus 467 v~~~~~ 472 (500)
T PF00201_consen 467 VIAFLL 472 (500)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 998775
No 4
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.9e-44 Score=391.54 Aligned_cols=386 Identities=22% Similarity=0.257 Sum_probs=276.4
Q ss_pred ecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHHHHHHHH
Q 006412 197 VVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISIQRKQIK 276 (646)
Q Consensus 197 ~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 276 (646)
.+|++||++|+++||++|+++||+|+|++++.+++.+++.|++|++++...... +..... ... ........+.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~-~~~~~~---~~~---~~~~~~~~~~ 74 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPP-DNPPEN---TEE---EPIDIIEKLL 74 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccc-cccccc---cCc---chHHHHHHHH
Confidence 478999999999999999999999999999999999999999999997542210 000000 000 1111111111
Q ss_pred HHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCcccchhHHHHHH
Q 006412 277 AIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYIIV 356 (646)
Q Consensus 277 ~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~~~~~~ls~~~~ 356 (646)
.......+.+ ....+.++||+||+|+.++++..+|+.+|||++.+++++.+. ..+|++.. +.....+......
T Consensus 75 ~~~~~~~~~l----~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~ 147 (392)
T TIGR01426 75 DEAEDVLPQL----EEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN-EEFEEMVS--PAGEGSAEEGAIA 147 (392)
T ss_pred HHHHHHHHHH----HHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc-cccccccc--ccchhhhhhhccc
Confidence 1111111111 112244689999999998999999999999999887665432 22333221 1100000000000
Q ss_pred HHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceeccCCCCCCCchhHH
Q 006412 357 DLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFV 436 (646)
Q Consensus 357 ~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~~~~~~~~~l~ 436 (646)
.. .+..+.+.+|++|+ ++|++.......... ..-...+.+++.+.|.+.+|+++++++||++.... +..
T Consensus 148 ~~-~~~~~~~~~~~~r~-~~gl~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~-------~~~ 216 (392)
T TIGR01426 148 ER-GLAEYVARLSALLE-EHGITTPPVEFLAAP--RRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRK-------EDG 216 (392)
T ss_pred cc-hhHHHHHHHHHHHH-HhCCCCCCHHHHhcC--CcCcEEEeCChHhCCCccccCCCeEEECCCCCCcc-------ccC
Confidence 00 12334556888887 788763221110011 11112334556666767789999999999864311 111
Q ss_pred HhHh--cCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCC-CCCCCCCCCcEEEeccCCcccccccccEE
Q 006412 437 QWIQ--RGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGD-LGKITEVPDNIFLLEDCPHDWLFPQCSAV 513 (646)
Q Consensus 437 ~wL~--~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~-~~~l~~~p~nV~i~~~vPq~~Ll~~a~~v 513 (646)
.|.. .++++|||++||+....+. +++.+++++++.++++|+..|++. ...+...++|+.+.+|+|+.+++++|++|
T Consensus 217 ~~~~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~~~~~ 295 (392)
T TIGR01426 217 SWERPGDGRPVVLISLGTVFNNQPS-FYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKKADAF 295 (392)
T ss_pred CCCCCCCCCCEEEEecCccCCCCHH-HHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhhCCEE
Confidence 2554 3568999999998655554 778889999999999999887652 23344578999999999999999999999
Q ss_pred EEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhh
Q 006412 514 VHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIE 592 (646)
Q Consensus 514 I~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~ 592 (646)
|||||+||++|++++|+|+|++|.+.||+.||+++++.|+|. .+...++++++|.++|+++| |++++++++++++.++
T Consensus 296 I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~ 374 (392)
T TIGR01426 296 ITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIR 374 (392)
T ss_pred EECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 67778899999999999999 9999999999999999
Q ss_pred cCCcHHHHHHHHHHhcC
Q 006412 593 NEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 593 ~~~G~~~Av~~ie~~L~ 609 (646)
..+|.++|++.|++++.
T Consensus 375 ~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 375 EAGGARRAADEIEGFLA 391 (392)
T ss_pred HcCCHHHHHHHHHHhhc
Confidence 99999999999999764
No 5
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-42 Score=374.28 Aligned_cols=392 Identities=28% Similarity=0.365 Sum_probs=266.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCCC-h-HHHHHHHhhcCCCCCCCcch
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGD-P-RVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~-p-~~l~~~~~~~~~~~~~~~~~ 267 (646)
+|||++++.|+.||++|+++||++|+++||+|+|+|++.|+++++++|+.|..++.. . .............
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~~~~~------- 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFAGVKS------- 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeeccccCChhhhhhhhhhccch-------
Confidence 599999999999999999999999999999999999999999999999666665542 2 1211111111100
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCC--CCCCCCCCCc
Q 006412 268 ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYE--FPHPLARVPQ 345 (646)
Q Consensus 268 i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~--~P~pl~~ip~ 345 (646)
+......+...+.... +......||+|+.+...... ++++..++|++.....+|+.... .|.+......
T Consensus 74 ~~~~~~~~~~~~~~~~--------~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
T COG1819 74 FRRLLQQFKKLIRELL--------ELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG 144 (406)
T ss_pred hHHHhhhhhhhhHHHH--------HHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc
Confidence 0001222222222211 11223467888877544444 89999999998887777764332 2222211110
Q ss_pred ccchh---HHHHHHHHHHHHhhHHHHHHHHHHhcCCCCC-cccccccCcccCcccccccCCCCCCCC-CCCCCcEEEeCc
Q 006412 346 SAGYW---LSYIIVDLLIWWGIRSYINDFRKRKLKLPPI-AYFSTYHGSISHLPTAYMWSPHLVPKP-SDWGSLVAVVGY 420 (646)
Q Consensus 346 ~~~~~---ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~-~~~~~~~~~~~~ip~~~~~sp~l~p~p-~d~~p~v~~vG~ 420 (646)
..... +.................+..|. ..++... +.+.......... .+.+.+.. +.| ..+|....++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~p~~~~~~~~ 220 (406)
T COG1819 145 KLPIPLYPLPPRLVRPLIFARSWLPKLVVRR-NLGLELGLPNIRRLFASGPLL--EIAYTDVL-FPPGDRLPFIGPYIGP 220 (406)
T ss_pred cccccccccChhhccccccchhhhhhhhhhh-hccccccccchHHHhcCCCCc--cccccccc-cCCCCCCCCCcCcccc
Confidence 00000 00000000000000011222222 2222210 0000000000011 11112221 122 445656666666
Q ss_pred eeccCCCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEecc
Q 006412 421 CLLNLGSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLED 500 (646)
Q Consensus 421 ~~~~~~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~ 500 (646)
.. +....++..|...++|+|||++||.... .+++++++++++.++.++|+++|..+. ....+|+|+++.+|
T Consensus 221 ~~------~~~~~~~~~~~~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~~-~~~~~p~n~~v~~~ 291 (406)
T COG1819 221 LL------GEAANELPYWIPADRPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGARD-TLVNVPDNVIVADY 291 (406)
T ss_pred cc------ccccccCcchhcCCCCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEecccccc-ccccCCCceEEecC
Confidence 53 2234445556778899999999999755 789999999999999999999876332 45678999999999
Q ss_pred CCcccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHH
Q 006412 501 CPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPE 579 (646)
Q Consensus 501 vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~ 579 (646)
+||.+++++||+||||||+|||+|||++|||+|++|...||+.||.++++.|+|. .++.+.++++.|+++|+++| |+.
T Consensus 292 ~p~~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~ 370 (406)
T COG1819 292 VPQLELLPRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDS 370 (406)
T ss_pred CCHHHHhhhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHH
Confidence 9999999999999999999999999999999999999999999999999999998 78999999999999999999 999
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHhcCCC
Q 006412 580 VKSRAMELAKLIENEDGVAAAVDAFHRHLPDE 611 (646)
Q Consensus 580 ~r~~A~~la~~l~~~~G~~~Av~~ie~~L~~~ 611 (646)
|+++++++++.++.++|.+.+++.+++....+
T Consensus 371 ~~~~~~~~~~~~~~~~g~~~~a~~le~~~~~~ 402 (406)
T COG1819 371 YRRAAERLAEEFKEEDGPAKAADLLEEFAREK 402 (406)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999977554
No 6
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-40 Score=364.78 Aligned_cols=399 Identities=13% Similarity=0.164 Sum_probs=249.5
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh------CCceEEEcCCCh-HHHHHHHhhcCCC
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS------AGVDFFPLGGDP-RVLAGYMARNKGL 260 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~------~Gl~f~~i~~~p-~~l~~~~~~~~~~ 260 (646)
..++||+++|++++||++||+.||+.|+.||+.|||++++.....+.. .+++|+.++... ..+..-......
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~- 82 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTD- 82 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccc-
Confidence 355799999999999999999999999999999999987765433331 257888776210 000000000000
Q ss_pred CCCCc-chHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCC----
Q 006412 261 IPSGP-GEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYE---- 335 (646)
Q Consensus 261 ~~~~~-~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~---- 335 (646)
.+... ..+....+.+...++.+... .+++|||+|++..|+..+|+++|||.+.|++++.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET-----------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh-----------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 00000 01111122223333332211 257999999999999999999999999998776321100
Q ss_pred --------CCCC---C----CCCCcccchhHH-HHHHHHHH----H-HhhHHHHHHHHHHhcCCCCCcccccccCcccCc
Q 006412 336 --------FPHP---L----ARVPQSAGYWLS-YIIVDLLI----W-WGIRSYINDFRKRKLKLPPIAYFSTYHGSISHL 394 (646)
Q Consensus 336 --------~P~p---l----~~ip~~~~~~ls-~~~~~~~~----~-~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~i 394 (646)
.+.. + ..+|......+. ..+...+. . .......+.++. ......+ ...+...+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~~~gv--lvNTf~eL 225 (472)
T PLN02670 152 SSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFA----IGGSDVV--IIRSSPEF 225 (472)
T ss_pred HhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhh----cccCCEE--EEeCHHHH
Confidence 0000 0 001100000000 00000000 0 001111111111 1111110 00111111
Q ss_pred ccccccCCCCCCCCCCCCCcEEEeCceecc--CCC-CCC-C---chhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHH
Q 006412 395 PTAYMWSPHLVPKPSDWGSLVAVVGYCLLN--LGS-KYQ-P---QENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEII 465 (646)
Q Consensus 395 p~~~~~sp~l~p~p~d~~p~v~~vG~~~~~--~~~-~~~-~---~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i 465 (646)
...++- . +. ..+++.+..+||+... ... ... . ..++.+||++++ ++|||||||+.....+++ +.+
T Consensus 226 E~~~l~--~-l~--~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~-~el 299 (472)
T PLN02670 226 EPEWFD--L-LS--DLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEV-TEL 299 (472)
T ss_pred hHHHHH--H-HH--HhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHH-HHH
Confidence 111110 0 00 0122356778887532 101 010 1 157899999874 699999999987776665 456
Q ss_pred HHHHHhcCCeEEEEecCC-CC--CCCCCCCCc---------EEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCC
Q 006412 466 LEALRDTGQRGIIDRGWG-DL--GKITEVPDN---------IFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCP 531 (646)
Q Consensus 466 ~~Al~~~g~r~Iv~~G~~-~~--~~l~~~p~n---------V~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP 531 (646)
+.+|+.++++|||..... +. .....+|++ +.+.+|+||.++ |+++++|||||||||++|++++|||
T Consensus 300 a~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP 379 (472)
T PLN02670 300 ALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRV 379 (472)
T ss_pred HHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCC
Confidence 999999999999986531 11 111224444 666799999999 6778899999999999999999999
Q ss_pred eeecCCCCChHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHHHHhh-CH---HHHHHHHHHHHHhhcCCcHHHHHHH
Q 006412 532 TTVVPFFGDQFFWGDRVQQKGLGPAPIPI----SQLTVENLSNAVRFML-QP---EVKSRAMELAKLIENEDGVAAAVDA 603 (646)
Q Consensus 532 ~vivP~~~DQ~~nA~~ve~~G~G~~~i~~----~~lt~e~L~~aI~~lL-dp---~~r~~A~~la~~l~~~~G~~~Av~~ 603 (646)
+|++|+++||+.||++++++|+|+ .+.. ..++.++|+++|+++| ++ +||++|+++++.+++.++.+.+|+.
T Consensus 380 ~l~~P~~~DQ~~Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~ 458 (472)
T PLN02670 380 LILFPVLNEQGLNTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDE 458 (472)
T ss_pred EEeCcchhccHHHHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHH
Confidence 999999999999999999999998 4543 2489999999999999 65 7999999999999999999999999
Q ss_pred HHHhcCCC
Q 006412 604 FHRHLPDE 611 (646)
Q Consensus 604 ie~~L~~~ 611 (646)
|++.|...
T Consensus 459 ~~~~l~~~ 466 (472)
T PLN02670 459 LVHYLREN 466 (472)
T ss_pred HHHHHHHh
Confidence 99998544
No 7
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-40 Score=361.90 Aligned_cols=386 Identities=15% Similarity=0.182 Sum_probs=242.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC-----CceEEEcCCChHHHHHHHhhcCCCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA-----GVDFFPLGGDPRVLAGYMARNKGLIPS 263 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~-----Gl~f~~i~~~p~~l~~~~~~~~~~~~~ 263 (646)
++.||+++|++++||++||+.||+.|+.+|++|||+|++.+...+... |+.|+.++....+ +. +.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~---------~~-~~ 74 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD---------DP-PR 74 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC---------Cc-cc
Confidence 446999999999999999999999999999999999988766555443 6888888642110 00 00
Q ss_pred CcchHH-----HHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC---C
Q 006412 264 GPGEIS-----IQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY---E 335 (646)
Q Consensus 264 ~~~~i~-----~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~---~ 335 (646)
....+. .....++++++.+. . .-.++|||+|.+..|+..+|+++|||.+.|+++...... .
T Consensus 75 ~~~~l~~a~~~~~~~~l~~ll~~l~----~-------~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~ 143 (448)
T PLN02562 75 DFFSIENSMENTMPPQLERLLHKLD----E-------DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQA 143 (448)
T ss_pred cHHHHHHHHHHhchHHHHHHHHHhc----C-------CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHH
Confidence 000000 01222233332211 0 013489999999999999999999999999987542110 0
Q ss_pred ---------CCC---C-----CCCCCcc--cc-hhHHHHHHHHH-HHHhhHHHHHHHHHHhcCCCCCcccccccCcccCc
Q 006412 336 ---------FPH---P-----LARVPQS--AG-YWLSYIIVDLL-IWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHL 394 (646)
Q Consensus 336 ---------~P~---p-----l~~ip~~--~~-~~ls~~~~~~~-~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~i 394 (646)
++. + ...+|.. .. .-+...+.... .......+.+.++. ......+ ...+...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v--lvNTf~eL 217 (448)
T PLN02562 144 IPELVRTGLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLER----TKSLRWI--LMNSFKDE 217 (448)
T ss_pred HHHHhhccccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhc----cccCCEE--EEcChhhh
Confidence 000 0 0011210 00 00000000000 00001111111111 1111110 01111122
Q ss_pred ccccc--cCCCCCCCCCCCCCcEEEeCceeccCCC----C--CCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHH
Q 006412 395 PTAYM--WSPHLVPKPSDWGSLVAVVGYCLLNLGS----K--YQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEI 464 (646)
Q Consensus 395 p~~~~--~sp~l~p~p~d~~p~v~~vG~~~~~~~~----~--~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~ 464 (646)
...+. +... . +++..+++..+||+...... . ...+.++.+||++++ ++|||+|||+....+.+.++.
T Consensus 218 E~~~~~~~~~~-~--~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 294 (448)
T PLN02562 218 EYDDVKNHQAS-Y--NNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRT 294 (448)
T ss_pred CHHHHHHHHhh-h--ccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHH
Confidence 11110 0000 1 12234678889998643211 0 122345779999885 499999999864445566777
Q ss_pred HHHHHHhcCCeEEEEecCCCCCCC-----CCCCCcEEEeccCCccccc--ccccEEEEcCchhHHHHHHHhCCCeeecCC
Q 006412 465 ILEALRDTGQRGIIDRGWGDLGKI-----TEVPDNIFLLEDCPHDWLF--PQCSAVVHHGGAGTTATGLKAGCPTTVVPF 537 (646)
Q Consensus 465 i~~Al~~~g~r~Iv~~G~~~~~~l-----~~~p~nV~i~~~vPq~~Ll--~~a~~vI~HGG~gTt~EaL~~GvP~vivP~ 537 (646)
++.++++.|++|||.......+.+ +..++|+++++|+||.+++ +++++||||||||||+||+++|||+|++|+
T Consensus 295 l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 374 (448)
T PLN02562 295 LALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPV 374 (448)
T ss_pred HHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCc
Confidence 899999999999987532111112 2257899999999999995 558899999999999999999999999999
Q ss_pred CCChHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHh
Q 006412 538 FGDQFFWGDRVQQ-KGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENED---GVAAAVDAFHRH 607 (646)
Q Consensus 538 ~~DQ~~nA~~ve~-~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~---G~~~Av~~ie~~ 607 (646)
++||+.||+++++ +|+|+ .+ ++++.++|+++|+++| +++||++|+++++++..+. ...+..+.|.+.
T Consensus 375 ~~DQ~~na~~~~~~~g~g~-~~--~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~ 446 (448)
T PLN02562 375 AGDQFVNCAYIVDVWKIGV-RI--SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGEEARLRSMMNFTTLKDE 446 (448)
T ss_pred ccchHHHHHHHHHHhCcee-Ee--CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999865 69986 33 4689999999999999 8999999999999887652 244455555443
No 8
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-39 Score=353.27 Aligned_cols=385 Identities=18% Similarity=0.252 Sum_probs=239.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCC-----ceEEEcCCChHHHHHHHhhcCCCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAG-----VDFFPLGGDPRVLAGYMARNKGLIPS 263 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~G-----l~f~~i~~~p~~l~~~~~~~~~~~~~ 263 (646)
+++||+++|+++.||++|++.||+.|+.+||+|||+|++.+...+++.+ +.|..++..+. .|+ +.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~---------dgL-p~ 72 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPV---------NGL-PA 72 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCc---------cCC-CC
Confidence 5689999999999999999999999999999999999888877665443 34544432110 011 11
Q ss_pred C---cchHH----H-H---HHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCC
Q 006412 264 G---PGEIS----I-Q---RKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTP 332 (646)
Q Consensus 264 ~---~~~i~----~-~---~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~ 332 (646)
+ ...+. . + ...+.+.++.+. +..++||||+| ++.|+..+|+.+|||++.|++++.+.
T Consensus 73 g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L-----------~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~ 140 (442)
T PLN02208 73 GAETTSDIPISMDNLLSEALDLTRDQVEAAV-----------RALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATT 140 (442)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHH-----------hhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHH
Confidence 0 00110 0 0 111111122211 12368999999 57889999999999999999876431
Q ss_pred C--CCCCC-----CCCCCCccc-chhHHHHHHHH-HHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCC
Q 006412 333 T--YEFPH-----PLARVPQSA-GYWLSYIIVDL-LIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPH 403 (646)
Q Consensus 333 ~--~~~P~-----pl~~ip~~~-~~~ls~~~~~~-~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~ 403 (646)
. ..+++ +...+|... ..... .+... .....+....+.+.+ .+.....+ ...+...+...++-
T Consensus 141 ~~~~~~~~~~~~~~~pglp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v--l~Ntf~eLE~~~~~--- 211 (442)
T PLN02208 141 IAHTHVPGGKLGVPPPGYPSSKVLFREN-DAHALATLSIFYKRLYHQITT---GLKSCDVI--ALRTCKEIEGKFCD--- 211 (442)
T ss_pred HHHHccCccccCCCCCCCCCcccccCHH-HcCcccccchHHHHHHHHHHh---hhccCCEE--EEECHHHHHHHHHH---
Confidence 1 11111 111222110 00000 00000 000001111222211 11111110 00111111111110
Q ss_pred CCCCCCCCCCcEEEeCceeccCCCCCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEec
Q 006412 404 LVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRG 481 (646)
Q Consensus 404 l~p~p~d~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G 481 (646)
.+.. .+++++..+||+..........+.++.+||++++ ++|||||||+.....+++.++ +.+++..+.+++|...
T Consensus 212 ~~~~--~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~-~~~l~~s~~pf~wv~r 288 (442)
T PLN02208 212 YISR--QYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQEL-CLGMELTGLPFLIAVK 288 (442)
T ss_pred HHHh--hcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH-HHHHHhCCCcEEEEEe
Confidence 0111 2356888999986532211234678999999874 699999999987777778776 4555556666665543
Q ss_pred CC-CC-CCCCCCC---------CcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHH
Q 006412 482 WG-DL-GKITEVP---------DNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRV 548 (646)
Q Consensus 482 ~~-~~-~~l~~~p---------~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~v 548 (646)
+. +. .....+| .|+.+.+|+||.++ |+++++|||||||||++||+++|||+|++|+++||+.||+++
T Consensus 289 ~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~ 368 (442)
T PLN02208 289 PPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLM 368 (442)
T ss_pred CCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHH
Confidence 32 11 1112244 57888899999999 788899999999999999999999999999999999999986
Q ss_pred HH-cCCCCCCcCCCC---CCHHHHHHHHHHhh-CH-----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 549 QQ-KGLGPAPIPISQ---LTVENLSNAVRFML-QP-----EVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 549 e~-~G~G~~~i~~~~---lt~e~L~~aI~~lL-dp-----~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.+ +|+|+ .+...+ +++++|+++|++++ ++ ++|++|+++++.+.+.++..+.++.|.+.+
T Consensus 369 ~~~~g~gv-~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 369 TEEFEVSV-EVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHhceeE-EeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 54 99998 565443 89999999999999 54 399999999999877555566655555443
No 9
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.8e-39 Score=358.27 Aligned_cols=393 Identities=19% Similarity=0.278 Sum_probs=244.7
Q ss_pred CCCcceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhC----CceEEEcCC-ChHHHHHHHhhcCC
Q 006412 187 SIPRLNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSA----GVDFFPLGG-DPRVLAGYMARNKG 259 (646)
Q Consensus 187 ~~~~mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~----Gl~f~~i~~-~p~~l~~~~~~~~~ 259 (646)
+..+.||+++|++++||++||+.||++|+.+ ||+|||++++.+...++.. |++|++++. .|.... .+
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~------~~ 80 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELV------RA 80 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccc------cc
Confidence 4567899999999999999999999999999 9999999999888777764 899999974 221110 00
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC---CC
Q 006412 260 LIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY---EF 336 (646)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~---~~ 336 (646)
......+......+...++.+...+. .++||||+|.++.|+..+|+++|||++.+++++.+... .+
T Consensus 81 --~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 81 --ADFPGFLEAVMTKMEAPFEQLLDRLE---------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred --cCHHHHHHHHHHHhHHHHHHHHHhcC---------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 00000011111122222333222211 25799999999999999999999999999998852111 11
Q ss_pred ---------CCCC--------CCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccc
Q 006412 337 ---------PHPL--------ARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYM 399 (646)
Q Consensus 337 ---------P~pl--------~~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~ 399 (646)
|... ..+|......... +... .+.......+.++...........+ ...+...+...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~d-lp~~-~~~~~~~~~~~~~~~~~~~~~~~~v--lvNTf~eLE~~~~ 225 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGLSSTRLSD-LPPI-FHGNSRRVLKRILEAFSWVPKAQYL--LFTSFYELEAQAI 225 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCCCCCChHH-Cchh-hcCCchHHHHHHHHHHhhcccCCEE--EEccHHHhhHHHH
Confidence 1111 0122110000000 0000 0000001111222100000000000 0011111111100
Q ss_pred cCCCCCCCCCCCCCcEEEeCceeccCCC-------CCC-CchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHH
Q 006412 400 WSPHLVPKPSDWGSLVAVVGYCLLNLGS-------KYQ-PQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEAL 469 (646)
Q Consensus 400 ~sp~l~p~p~d~~p~v~~vG~~~~~~~~-------~~~-~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al 469 (646)
- . +. ..++..+..+||+...... .+. .+.++..||+.++ ++|||+|||.....+++ ++.++++|
T Consensus 226 ~--~-l~--~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~-~~~~~~~l 299 (459)
T PLN02448 226 D--A-LK--SKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQ-MDEIAAGL 299 (459)
T ss_pred H--H-HH--hhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHH-HHHHHHHH
Confidence 0 0 00 0123346678887532110 011 2247889998764 59999999997666554 66779999
Q ss_pred HhcCCeEEEEecCCCCCCCCC-CCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHH
Q 006412 470 RDTGQRGIIDRGWGDLGKITE-VPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGD 546 (646)
Q Consensus 470 ~~~g~r~Iv~~G~~~~~~l~~-~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~ 546 (646)
+..+++|||.... +...+.+ .++|+++.+|+||.++ |+++++|||||||||++||+++|||+|++|+++||+.||+
T Consensus 300 ~~~~~~~lw~~~~-~~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~ 378 (459)
T PLN02448 300 RDSGVRFLWVARG-EASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSK 378 (459)
T ss_pred HhCCCCEEEEEcC-chhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHH
Confidence 9999999986432 1122323 3468999999999999 5667789999999999999999999999999999999999
Q ss_pred HHHH-cCCCCCCcCC-----CCCCHHHHHHHHHHhh-CH-----HHHHHHHHHHHHhhcC---Cc-HHHHHHHHHHhc
Q 006412 547 RVQQ-KGLGPAPIPI-----SQLTVENLSNAVRFML-QP-----EVKSRAMELAKLIENE---DG-VAAAVDAFHRHL 608 (646)
Q Consensus 547 ~ve~-~G~G~~~i~~-----~~lt~e~L~~aI~~lL-dp-----~~r~~A~~la~~l~~~---~G-~~~Av~~ie~~L 608 (646)
++++ +|+|+ .+.. ..+++++|+++|+++| ++ ++|++|++++++++.. +| ..+..+.|.+.+
T Consensus 379 ~v~~~~g~G~-~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~ 455 (459)
T PLN02448 379 LIVEDWKIGW-RVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDI 455 (459)
T ss_pred HHHHHhCceE-EEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9987 68887 4431 3579999999999999 53 6999999998877663 44 555555555544
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.4e-39 Score=352.86 Aligned_cols=390 Identities=16% Similarity=0.219 Sum_probs=241.4
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch-hhhh-hCCceEEEcCCC-hHHHHHHHhhcCCCCCCC
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR-TFVR-SAGVDFFPLGGD-PRVLAGYMARNKGLIPSG 264 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~-~~v~-~~Gl~f~~i~~~-p~~l~~~~~~~~~~~~~~ 264 (646)
.++.||+++|++++||++||+.||+.|+.+|+.|||++++... .... ..++.|..++.. |.... .+ .. .
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~----~~---~~-~ 76 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDF----KN---LG-P 76 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccc----cc---cC-H
Confidence 3778999999999999999999999999999999999776432 1111 135788877531 11000 00 00 0
Q ss_pred cchHH----HHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCC---CC--
Q 006412 265 PGEIS----IQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPT---YE-- 335 (646)
Q Consensus 265 ~~~i~----~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~---~~-- 335 (646)
...+. .....+++++..+... ..-+++|||+|.+..|+..+|+++|||.+.|++++.... +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~---------~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQ---------QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc---------cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 00011 1122333333332110 012579999999999999999999999999998774321 00
Q ss_pred --------CCCCC------CCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccC
Q 006412 336 --------FPHPL------ARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWS 401 (646)
Q Consensus 336 --------~P~pl------~~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~s 401 (646)
.|... ..+|......... +.. ..+.........++. .........+ ...+...+...++-
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~d-lp~-~~~~~~~~~~~~~~~-~~~~~~~~~v--lvNTf~eLE~~~~~- 221 (451)
T PLN02410 148 KLYANNVLAPLKEPKGQQNELVPEFHPLRCKD-FPV-SHWASLESIMELYRN-TVDKRTASSV--IINTASCLESSSLS- 221 (451)
T ss_pred HHHhccCCCCccccccCccccCCCCCCCChHH-Ccc-hhcCCcHHHHHHHHH-HhhcccCCEE--EEeChHHhhHHHHH-
Confidence 01100 0122100000000 000 000000011112221 1111111100 00111111111110
Q ss_pred CCCCCCCCCCCCcEEEeCceeccCC---CCCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeE
Q 006412 402 PHLVPKPSDWGSLVAVVGYCLLNLG---SKYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRDTGQRG 476 (646)
Q Consensus 402 p~l~p~p~d~~p~v~~vG~~~~~~~---~~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~ 476 (646)
. +- ...++.+..+||+..... .......++.+||++++ ++|||+|||+.....+++.+ ++.+|+.++++|
T Consensus 222 -~-l~--~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~e-la~gLe~s~~~F 296 (451)
T PLN02410 222 -R-LQ--QQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVME-TASGLDSSNQQF 296 (451)
T ss_pred -H-HH--hccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHH-HHHHHHhcCCCe
Confidence 0 00 012346778998854211 11122346789999874 69999999998888888766 699999999999
Q ss_pred EEEecCCC---CC---CC-----CCCCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHH
Q 006412 477 IIDRGWGD---LG---KI-----TEVPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFF 543 (646)
Q Consensus 477 Iv~~G~~~---~~---~l-----~~~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~ 543 (646)
||...... .+ .+ +..++|+.+++|+||.++ |+++++|||||||||++||+++|||+|++|+++||+.
T Consensus 297 lWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~ 376 (451)
T PLN02410 297 LWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKV 376 (451)
T ss_pred EEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHH
Confidence 99865221 01 11 235688999999999999 5559999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCCCCCcCCCCCCHHHHHHHHHHhh-CH---HHHHHHHHHHHHhhc---CCc-HHHHHHHHHHh
Q 006412 544 WGDRVQQK-GLGPAPIPISQLTVENLSNAVRFML-QP---EVKSRAMELAKLIEN---EDG-VAAAVDAFHRH 607 (646)
Q Consensus 544 nA~~ve~~-G~G~~~i~~~~lt~e~L~~aI~~lL-dp---~~r~~A~~la~~l~~---~~G-~~~Av~~ie~~ 607 (646)
||+++++. |+|+ .+. ..+++++|+++|+++| ++ ++|++|+++++++++ ++| ..+..+.|.+.
T Consensus 377 na~~~~~~~~~G~-~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~ 447 (451)
T PLN02410 377 NARYLECVWKIGI-QVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHF 447 (451)
T ss_pred HHHHHHHHhCeeE-EeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99998754 9997 454 6899999999999999 54 699999999988875 455 44444544443
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.4e-39 Score=353.91 Aligned_cols=380 Identities=21% Similarity=0.297 Sum_probs=234.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHH--HHhCCCEEEEEeCCCchhhhhhC-----CceEEEcCCChHHHHHHHhhcCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKR--LQEFGHRVRLATHANFRTFVRSA-----GVDFFPLGGDPRVLAGYMARNKGLI 261 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~--L~~rGH~Vt~~t~~~~~~~v~~~-----Gl~f~~i~~~p~~l~~~~~~~~~~~ 261 (646)
++.||+++|++++||++|++.||++ |.+||++|||++++.+.+.++.. ++++..++. |+.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------------glp 73 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSD-------------GLP 73 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCC-------------CCC
Confidence 4579999999999999999999999 56999999999988776665542 244443321 110
Q ss_pred CCCcchHHHHHHHH----HHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCC---C
Q 006412 262 PSGPGEISIQRKQI----KAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPT---Y 334 (646)
Q Consensus 262 ~~~~~~i~~~~~~~----~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~---~ 334 (646)
+............+ ...+..+. ...+||+||+|.++.|+..+|+++|||.+.|++.+++.. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~l-----------~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~ 142 (456)
T PLN02210 74 KDDPRAPETLLKSLNKVGAKNLSKII-----------EEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYY 142 (456)
T ss_pred CCcccCHHHHHHHHHHhhhHHHHHHH-----------hcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHH
Confidence 00000011111111 11111111 112589999999999999999999999999987764321 1
Q ss_pred C-------CCCCC-----CCCCcccchhHHHHHHHHHH-HH--hhHHHHHHHHHHhcCCCCCcccccccCcccCcccccc
Q 006412 335 E-------FPHPL-----ARVPQSAGYWLSYIIVDLLI-WW--GIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYM 399 (646)
Q Consensus 335 ~-------~P~pl-----~~ip~~~~~~ls~~~~~~~~-~~--~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~ 399 (646)
. ++... ..+|......... +...+. .. .+.....++.+ .. .....+ +..+...+...++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~Pgl~~~~~~d-l~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~v--lvNTf~eLE~~~~ 216 (456)
T PLN02210 143 RYYMKTNSFPDLEDLNQTVELPALPLLEVRD-LPSFMLPSGGAHFNNLMAEFAD-CL--RYVKWV--LVNSFYELESEII 216 (456)
T ss_pred hhhhccCCCCcccccCCeeeCCCCCCCChhh-CChhhhcCCchHHHHHHHHHHH-hc--ccCCEE--EEeCHHHHhHHHH
Confidence 0 11100 0111100000000 000000 00 01111112211 11 111100 0011111111111
Q ss_pred cCCCCCCCCCCCCCcEEEeCceecc----CCC----------CCCCchhHHHhHhcC--CCcEEEEcCCCCCCChHHHHH
Q 006412 400 WSPHLVPKPSDWGSLVAVVGYCLLN----LGS----------KYQPQENFVQWIQRG--PEPIYIGFGSMPLEDPKKTTE 463 (646)
Q Consensus 400 ~sp~l~p~p~d~~p~v~~vG~~~~~----~~~----------~~~~~~~l~~wL~~~--~pvVyVsfGS~~~~~p~~l~~ 463 (646)
- . +. .. +.+..+||+... ... .+..+.++.+||+++ +++|||+|||...... ..++
T Consensus 217 ~--~-l~---~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~-~~~~ 288 (456)
T PLN02210 217 E--S-MA---DL-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLE-NQVE 288 (456)
T ss_pred H--H-Hh---hc-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCH-HHHH
Confidence 0 0 00 01 246788887531 000 023456789999976 4699999999976654 4556
Q ss_pred HHHHHHHhcCCeEEEEecCCC----CCCCCC-C-CCcEEEeccCCccccccc--ccEEEEcCchhHHHHHHHhCCCeeec
Q 006412 464 IILEALRDTGQRGIIDRGWGD----LGKITE-V-PDNIFLLEDCPHDWLFPQ--CSAVVHHGGAGTTATGLKAGCPTTVV 535 (646)
Q Consensus 464 ~i~~Al~~~g~r~Iv~~G~~~----~~~l~~-~-p~nV~i~~~vPq~~Ll~~--a~~vI~HGG~gTt~EaL~~GvP~viv 535 (646)
.++.+|+.++++|||+.+... ...+.+ . +++..+++|+||.+++++ +++|||||||||++|++++|||+|++
T Consensus 289 e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 289 TIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred HHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 679999999999999865321 111212 2 477788999999999555 55999999999999999999999999
Q ss_pred CCCCChHHHHHHHHH-cCCCCCCcCC----CCCCHHHHHHHHHHhh-CH---HHHHHHHHHHHHhhc---CCc-HHHHHH
Q 006412 536 PFFGDQFFWGDRVQQ-KGLGPAPIPI----SQLTVENLSNAVRFML-QP---EVKSRAMELAKLIEN---EDG-VAAAVD 602 (646)
Q Consensus 536 P~~~DQ~~nA~~ve~-~G~G~~~i~~----~~lt~e~L~~aI~~lL-dp---~~r~~A~~la~~l~~---~~G-~~~Av~ 602 (646)
|+++||+.||+++++ +|+|+ .+.. ..++.++|+++|+++| ++ ++|++|+++++..++ ++| ..+..+
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred ccccccHHHHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999986 89997 4542 3589999999999999 65 499999999877665 445 455555
Q ss_pred HHHHh
Q 006412 603 AFHRH 607 (646)
Q Consensus 603 ~ie~~ 607 (646)
.|.+.
T Consensus 448 ~~v~~ 452 (456)
T PLN02210 448 LFISD 452 (456)
T ss_pred HHHHH
Confidence 55444
No 12
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.4e-39 Score=354.22 Aligned_cols=402 Identities=17% Similarity=0.227 Sum_probs=239.6
Q ss_pred CCCCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh-----CCceEEEcCCCh-HHHHHHHhhcCC
Q 006412 186 KSIPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS-----AGVDFFPLGGDP-RVLAGYMARNKG 259 (646)
Q Consensus 186 ~~~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~-----~Gl~f~~i~~~p-~~l~~~~~~~~~ 259 (646)
....++||+++|++++||++||+.||+.|+.+|+.|||++++.....++. .++.|..++... ..+..-......
T Consensus 5 ~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 5 NKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred ccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 34567899999999999999999999999999999999988765554443 146666544210 000000000000
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC-----
Q 006412 260 LIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY----- 334 (646)
Q Consensus 260 ~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~----- 334 (646)
++. ..+..+......+...+...+.. . ..+|+|||+|.+..|+..+|+++|||.+.|+|++.+...
T Consensus 85 -~~~--~~~~~~~~a~~~~~~~~~~~l~~-----~-~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~ 155 (477)
T PLN02863 85 -LPP--SGFPLMIHALGELYAPLLSWFRS-----H-PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSL 155 (477)
T ss_pred -cch--hhHHHHHHHHHHhHHHHHHHHHh-----C-CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHH
Confidence 000 00001111111111111111111 0 125799999999999999999999999999988753211
Q ss_pred --CCCCC-----------CCCCCcccch---hHHHHHHHHHHH-HhhHHHHHHHHHHhcCCCCCcccccccCcccCcccc
Q 006412 335 --EFPHP-----------LARVPQSAGY---WLSYIIVDLLIW-WGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTA 397 (646)
Q Consensus 335 --~~P~p-----------l~~ip~~~~~---~ls~~~~~~~~~-~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~ 397 (646)
..|+. +..+|..... -+.......... .......+.++. ......+ ...+...+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v--lvNTf~eLE~~ 229 (477)
T PLN02863 156 WREMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRA----NIASWGL--VVNSFTELEGI 229 (477)
T ss_pred hhcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhh----hccCCEE--EEecHHHHHHH
Confidence 11110 0112211000 000000000000 000111122211 0000000 00111111111
Q ss_pred cccCCCCCCCCCCCC-CcEEEeCceeccCC-C---------CCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHH
Q 006412 398 YMWSPHLVPKPSDWG-SLVAVVGYCLLNLG-S---------KYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEI 464 (646)
Q Consensus 398 ~~~sp~l~p~p~d~~-p~v~~vG~~~~~~~-~---------~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~ 464 (646)
++- . + ...++ +.+..+||+.+... . ....++++.+||+.++ ++|||+|||+.....+++ +.
T Consensus 230 ~~~--~-~--~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~-~e 303 (477)
T PLN02863 230 YLE--H-L--KKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQM-EA 303 (477)
T ss_pred HHH--H-H--HhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHH-HH
Confidence 110 0 0 00122 34667787753211 0 0112457999999875 699999999987777765 55
Q ss_pred HHHHHHhcCCeEEEEecCCCC--CCCCCCC---------CcEEEeccCCccccc--ccccEEEEcCchhHHHHHHHhCCC
Q 006412 465 ILEALRDTGQRGIIDRGWGDL--GKITEVP---------DNIFLLEDCPHDWLF--PQCSAVVHHGGAGTTATGLKAGCP 531 (646)
Q Consensus 465 i~~Al~~~g~r~Iv~~G~~~~--~~l~~~p---------~nV~i~~~vPq~~Ll--~~a~~vI~HGG~gTt~EaL~~GvP 531 (646)
++.+|+.++++|||..+.... .....+| .++++.+|+||.+++ +++++|||||||||++||+++|||
T Consensus 304 la~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP 383 (477)
T PLN02863 304 LASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVP 383 (477)
T ss_pred HHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCC
Confidence 699999999999999763211 0111233 357778999999995 559999999999999999999999
Q ss_pred eeecCCCCChHHHHHHH-HHcCCCCCCcCC---CCCCHHHHHHHHHHhh--CHHHHHHHHHHHHHhhcC---Cc-HHHHH
Q 006412 532 TTVVPFFGDQFFWGDRV-QQKGLGPAPIPI---SQLTVENLSNAVRFML--QPEVKSRAMELAKLIENE---DG-VAAAV 601 (646)
Q Consensus 532 ~vivP~~~DQ~~nA~~v-e~~G~G~~~i~~---~~lt~e~L~~aI~~lL--dp~~r~~A~~la~~l~~~---~G-~~~Av 601 (646)
+|++|+++||+.||+++ +++|+|+ .+.. ...+.+++.++|++++ ++++|++|++++++.++. +| ..+..
T Consensus 384 ~l~~P~~~DQ~~na~~v~~~~gvG~-~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l 462 (477)
T PLN02863 384 MLAWPMAADQFVNASLLVDELKVAV-RVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDL 462 (477)
T ss_pred EEeCCccccchhhHHHHHHhhceeE-EeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 99999999999999996 5689998 4532 2468999999999988 689999999999875543 33 56666
Q ss_pred HHHHHhcC
Q 006412 602 DAFHRHLP 609 (646)
Q Consensus 602 ~~ie~~L~ 609 (646)
+.|.+.+.
T Consensus 463 ~~~v~~i~ 470 (477)
T PLN02863 463 DGFVKHVV 470 (477)
T ss_pred HHHHHHHH
Confidence 66665553
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-39 Score=353.83 Aligned_cols=394 Identities=15% Similarity=0.139 Sum_probs=235.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC-----CceEEEcCCC-hHHHHHHHhhcCCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA-----GVDFFPLGGD-PRVLAGYMARNKGLIP 262 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~-----Gl~f~~i~~~-p~~l~~~~~~~~~~~~ 262 (646)
.+.||+++|++++||++||+.||+.|+.+|++|||++++.+...++.. ++.|.++... +..+..-.....++..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 357999999999999999999999999999999999988776666432 3666444310 0000000000000000
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCCC--C---
Q 006412 263 SGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEF--P--- 337 (646)
Q Consensus 263 ~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~--P--- 337 (646)
.....+......+...++.+. ...+|||||+|. +.|+..+|+++|||++.|++++......+ +
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L-----------~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~ 150 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKV-----------RALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE 150 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----------hcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh
Confidence 000001111112222222211 113679999995 88999999999999999998764211000 0
Q ss_pred --CCCCCCCccc-chhHHHH-HHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCC
Q 006412 338 --HPLARVPQSA-GYWLSYI-IVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGS 413 (646)
Q Consensus 338 --~pl~~ip~~~-~~~ls~~-~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p 413 (646)
.++..+|... ....... +...+ ..........++. +.....+ ...+...+...|+- . +. ..+++
T Consensus 151 ~~~~~pg~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~v--lvNTf~eLE~~~~~--~-~~--~~~~~ 218 (446)
T PLN00414 151 LGFPPPDYPLSKVALRGHDANVCSLF-ANSHELFGLITKG----LKNCDVV--SIRTCVELEGNLCD--F-IE--RQCQR 218 (446)
T ss_pred cCCCCCCCCCCcCcCchhhcccchhh-cccHHHHHHHHHh----hccCCEE--EEechHHHHHHHHH--H-HH--HhcCC
Confidence 0111122100 0000000 00000 0000000011111 1101100 00111122111110 0 00 01234
Q ss_pred cEEEeCceeccCCC--CCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCC-CCCC-
Q 006412 414 LVAVVGYCLLNLGS--KYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWG-DLGK- 487 (646)
Q Consensus 414 ~v~~vG~~~~~~~~--~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~-~~~~- 487 (646)
.+..+||+...... ......++.+|||+++ ++|||+|||......+++.++ +.+|+..|.+|+|+.... +.+.
T Consensus 219 ~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~-a~gL~~s~~~Flwvvr~~~~~~~~ 297 (446)
T PLN00414 219 KVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEF-CLGMELTGLPFLIAVMPPKGSSTV 297 (446)
T ss_pred CeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHH-HHHHHHcCCCeEEEEecCCCcccc
Confidence 56788988542211 1112346889999876 599999999988888888775 788999999999875421 1000
Q ss_pred CCCCC--------CcE-EEeccCCccccc--ccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHH-HHcCCCC
Q 006412 488 ITEVP--------DNI-FLLEDCPHDWLF--PQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRV-QQKGLGP 555 (646)
Q Consensus 488 l~~~p--------~nV-~i~~~vPq~~Ll--~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~v-e~~G~G~ 555 (646)
...+| ++. .+.+|+||.+++ +++++|||||||||++||+++|||+|++|+++||+.||+++ +.+|+|+
T Consensus 298 ~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~ 377 (446)
T PLN00414 298 QEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSV 377 (446)
T ss_pred hhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEE
Confidence 01233 333 344899999995 66689999999999999999999999999999999999999 4789997
Q ss_pred CCcCCC---CCCHHHHHHHHHHhh-CH-----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 556 APIPIS---QLTVENLSNAVRFML-QP-----EVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 556 ~~i~~~---~lt~e~L~~aI~~lL-dp-----~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.+... .+++++|+++++++| ++ ++|++|+++++.+.+++|....++.|.+.+
T Consensus 378 -~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~ 438 (446)
T PLN00414 378 -KVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEAL 438 (446)
T ss_pred -EeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 45432 489999999999999 53 399999999999988888333344444433
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-38 Score=354.06 Aligned_cols=394 Identities=17% Similarity=0.245 Sum_probs=241.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCc-hhh------hh------hCCceEEEcCCChHHHHHHH
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFG--HRVRLATHANF-RTF------VR------SAGVDFFPLGGDPRVLAGYM 254 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rG--H~Vt~~t~~~~-~~~------v~------~~Gl~f~~i~~~p~~l~~~~ 254 (646)
++||+++|++++||++||+.||+.|+.+| ..|||++++.. ... +. ..++.|+.++..... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~--~-- 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP--T-- 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC--c--
Confidence 68999999999999999999999999998 88999976543 211 21 125888887632100 0
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCc-ccEEEECCCccchHHHHHHhCCCEEEEEccCCCCC
Q 006412 255 ARNKGLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFR-SQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPT 333 (646)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~-pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~ 333 (646)
... ......+......+++.++.+...... ...+ .+|||+|.++.|+..+|+++|||++.|+|++.+..
T Consensus 78 ---~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~------~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~ 147 (481)
T PLN02554 78 ---TED-PTFQSYIDNQKPKVRDAVAKLVDDSST------PSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFL 147 (481)
T ss_pred ---ccc-hHHHHHHHHHHHHHHHHHHHHHhhhcc------CCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHH
Confidence 000 000001112233444444433211100 0012 37999999999999999999999999998874311
Q ss_pred C---CCC-------CC---CC------CCCccc-chhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccC
Q 006412 334 Y---EFP-------HP---LA------RVPQSA-GYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISH 393 (646)
Q Consensus 334 ~---~~P-------~p---l~------~ip~~~-~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ 393 (646)
. .+| .+ .. .+|... ...... +...+ +. ......+.+....+.....+ ...+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~d-lp~~~-~~--~~~~~~~~~~~~~~~~~~gv--lvNt~~e 221 (481)
T PLN02554 148 GLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKC-LPSVL-LS--KEWLPLFLAQARRFREMKGI--LVNTVAE 221 (481)
T ss_pred HHHHhhhhhccccccCccccCCCCceeECCCCCCCCCHHH-CCCcc-cC--HHHHHHHHHHHHhcccCCEE--EEechHH
Confidence 0 010 00 00 022110 000000 00000 00 00011111100011111110 0011111
Q ss_pred cccccccCCCCCCCCCCCCCcEEEeCceec-cCC-C--CCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHH
Q 006412 394 LPTAYMWSPHLVPKPSDWGSLVAVVGYCLL-NLG-S--KYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILE 467 (646)
Q Consensus 394 ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~-~~~-~--~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~ 467 (646)
+...+.. .+...+. ..+.+..+||+.. ... . ....+.++.+||++++ ++|||+|||+.....+++ +.++.
T Consensus 222 Le~~~~~--~l~~~~~-~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~-~~la~ 297 (481)
T PLN02554 222 LEPQALK--FFSGSSG-DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQA-REIAI 297 (481)
T ss_pred HhHHHHH--HHHhccc-CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHH-HHHHH
Confidence 1111100 0000000 1245778898832 211 1 1234568999999874 599999999977676654 55689
Q ss_pred HHHhcCCeEEEEecCCC-------------CCC-CC-----CCCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHH
Q 006412 468 ALRDTGQRGIIDRGWGD-------------LGK-IT-----EVPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGL 526 (646)
Q Consensus 468 Al~~~g~r~Iv~~G~~~-------------~~~-l~-----~~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL 526 (646)
+|+.++++|||..++.. ... +. ..++|+++++|+||.++ |+++++|||||||||++||+
T Consensus 298 ~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~ 377 (481)
T PLN02554 298 ALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESL 377 (481)
T ss_pred HHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHH
Confidence 99999999999875421 000 11 14568889999999999 59999999999999999999
Q ss_pred HhCCCeeecCCCCChHHHH-HHHHHcCCCCCCcCC-----------CCCCHHHHHHHHHHhh--CHHHHHHHHHHHHHhh
Q 006412 527 KAGCPTTVVPFFGDQFFWG-DRVQQKGLGPAPIPI-----------SQLTVENLSNAVRFML--QPEVKSRAMELAKLIE 592 (646)
Q Consensus 527 ~~GvP~vivP~~~DQ~~nA-~~ve~~G~G~~~i~~-----------~~lt~e~L~~aI~~lL--dp~~r~~A~~la~~l~ 592 (646)
++|||||++|+++||+.|| .+++++|+|+ .+.. ..+++++|+++|+++| +++||++|+++++.++
T Consensus 378 ~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~ 456 (481)
T PLN02554 378 WFGVPMAAWPLYAEQKFNAFEMVEELGLAV-EIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCH 456 (481)
T ss_pred HcCCCEEecCccccchhhHHHHHHHhCceE-EeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 5589999998 4542 3689999999999999 6889999999999988
Q ss_pred c---CCc-HHHHHHHHHHhc
Q 006412 593 N---EDG-VAAAVDAFHRHL 608 (646)
Q Consensus 593 ~---~~G-~~~Av~~ie~~L 608 (646)
. ++| ..++.+.|.+.+
T Consensus 457 ~av~~gGss~~~l~~lv~~~ 476 (481)
T PLN02554 457 VALMDGGSSHTALKKFIQDV 476 (481)
T ss_pred HHhcCCChHHHHHHHHHHHH
Confidence 4 455 455555555544
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-38 Score=348.25 Aligned_cols=395 Identities=14% Similarity=0.144 Sum_probs=238.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC-----C--ceEEEcCCChHHHHHHHhhcCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA-----G--VDFFPLGGDPRVLAGYMARNKGLI 261 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~-----G--l~f~~i~~~p~~l~~~~~~~~~~~ 261 (646)
+++||+++|++++||++|++.||+.|+.+|+.|||++++.....+... + +.+.+++.. ..+..-......+.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~-~glp~g~e~~~~~~ 82 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHV-DGLPVGTETVSEIP 82 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCc-CCCCCcccccccCC
Confidence 678999999999999999999999999999999999887654444321 2 556666521 11100000000000
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCC--CCC-
Q 006412 262 PSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYE--FPH- 338 (646)
Q Consensus 262 ~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~--~P~- 338 (646)
......+......+..-++.+.. ..+|||||+|. ..|+..+|+++|||.+.|++++...... .+.
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~-----------~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 150 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVR-----------AVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGG 150 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHH-----------hCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccc
Confidence 00000011111111122222211 12579999995 8899999999999999999877432100 010
Q ss_pred ----CCCCCCcc---cch--hHHHHH-HHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCC
Q 006412 339 ----PLARVPQS---AGY--WLSYII-VDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKP 408 (646)
Q Consensus 339 ----pl~~ip~~---~~~--~ls~~~-~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p 408 (646)
+...+|.. ... ...+.. ............+.++.+ .+.....+ ...+...+...|+- . +..
T Consensus 151 ~~~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~v--lvNTf~eLE~~~~~--~-~~~- 221 (453)
T PLN02764 151 ELGVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTT---SLMNSDVI--AIRTAREIEGNFCD--Y-IEK- 221 (453)
T ss_pred cCCCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHH---hhccCCEE--EEeccHHhhHHHHH--H-HHh-
Confidence 11112210 000 000000 000000001111222211 01111110 00111122111110 0 000
Q ss_pred CCCCCcEEEeCceeccCCCCCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCC-CC
Q 006412 409 SDWGSLVAVVGYCLLNLGSKYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWG-DL 485 (646)
Q Consensus 409 ~d~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~-~~ 485 (646)
.+++.+..+||+..........+.++.+|||+++ ++|||||||+.....+++.++ +.+|+..+.+++|..... +.
T Consensus 222 -~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~el-a~gL~~s~~pflwv~r~~~~~ 299 (453)
T PLN02764 222 -HCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQEL-CLGMELTGSPFLVAVKPPRGS 299 (453)
T ss_pred -hcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHH-HHHHHhCCCCeEEEEeCCCCC
Confidence 1234677899985422111112467999999875 599999999988888888775 889999999999885421 00
Q ss_pred -CCCCCCCC---------cEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHH-HcC
Q 006412 486 -GKITEVPD---------NIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQ-QKG 552 (646)
Q Consensus 486 -~~l~~~p~---------nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve-~~G 552 (646)
.....+|+ ++.+.+|+||.++ |+++++|||||||||++|++++|||+|++|+++||+.||++++ .+|
T Consensus 300 ~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g 379 (453)
T PLN02764 300 STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELK 379 (453)
T ss_pred cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhc
Confidence 00112333 3455699999999 5668999999999999999999999999999999999999995 689
Q ss_pred CCCCCcCC---CCCCHHHHHHHHHHhh-CH-----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 553 LGPAPIPI---SQLTVENLSNAVRFML-QP-----EVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 553 ~G~~~i~~---~~lt~e~L~~aI~~lL-dp-----~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
+|+ .+.. ..++.++|+++|+++| ++ ++|++++++++++++.+...+.++.|.+.+
T Consensus 380 ~gv-~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~ 443 (453)
T PLN02764 380 VSV-EVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESL 443 (453)
T ss_pred eEE-EeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 997 3432 2589999999999999 53 399999999999987776666666665554
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6.4e-38 Score=349.27 Aligned_cols=397 Identities=19% Similarity=0.195 Sum_probs=232.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceE-------------EEcCCChHHHHHHHh
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDF-------------FPLGGDPRVLAGYMA 255 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f-------------~~i~~~p~~l~~~~~ 255 (646)
+++||+++|+++.||++|++.||++|+.|||+|||++++.+.+.+++.+-+| ++++.....+..-..
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 3579999999999999999999999999999999999988776666543222 333210000000000
Q ss_pred hcCCCCCCC----cch-HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCC
Q 006412 256 RNKGLIPSG----PGE-ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPW 330 (646)
Q Consensus 256 ~~~~~~~~~----~~~-i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~ 330 (646)
+...++.. ... +.........+...+.... +..+||+||+|.++.|+..+|+++|||.++|++++.
T Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--------~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a 154 (482)
T PLN03007 84 -NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLL--------ETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGY 154 (482)
T ss_pred -cccccccccccchHHHHHHHHHHHHHHHHHHHHHH--------hcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccH
Confidence 00000000 001 1111111112222111111 123689999999999999999999999999988653
Q ss_pred CCC---C--CCCCC------------CCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccC
Q 006412 331 TPT---Y--EFPHP------------LARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISH 393 (646)
Q Consensus 331 ~~~---~--~~P~p------------l~~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ 393 (646)
+.. + .+..+ +..+|.......+.. ........+...+...+. . +.....+ .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~--~~~~~~v--------l 222 (482)
T PLN03007 155 FSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQI-NDADEESPMGKFMKEVRE-S--EVKSFGV--------L 222 (482)
T ss_pred HHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhc-CCCCCchhHHHHHHHHHh-h--cccCCEE--------E
Confidence 211 0 00111 011111000000000 000000000111111111 0 0000000 0
Q ss_pred cccccccCCCCCCCC-CCCCCcEEEeCceeccCCC----------CCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHH
Q 006412 394 LPTAYMWSPHLVPKP-SDWGSLVAVVGYCLLNLGS----------KYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKK 460 (646)
Q Consensus 394 ip~~~~~sp~l~p~p-~d~~p~v~~vG~~~~~~~~----------~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~ 460 (646)
+...+...+...+.. ...+..+..+||+...... ....+.++.+||++++ ++|||+|||+.....++
T Consensus 223 ~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~ 302 (482)
T PLN03007 223 VNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQ 302 (482)
T ss_pred EECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHH
Confidence 011000001001100 1122356788886432110 0112467899999874 59999999998777777
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCC-----CCCCCC------CCCcEEEeccCCcccccc--cccEEEEcCchhHHHHHHH
Q 006412 461 TTEIILEALRDTGQRGIIDRGWGD-----LGKITE------VPDNIFLLEDCPHDWLFP--QCSAVVHHGGAGTTATGLK 527 (646)
Q Consensus 461 l~~~i~~Al~~~g~r~Iv~~G~~~-----~~~l~~------~p~nV~i~~~vPq~~Ll~--~a~~vI~HGG~gTt~EaL~ 527 (646)
+.++ +.+|+.++++|||..+... .+.+.+ .+.|+++.+|+||.++++ ++++|||||||||++||++
T Consensus 303 ~~~~-~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~ 381 (482)
T PLN03007 303 LFEI-AAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVA 381 (482)
T ss_pred HHHH-HHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHH
Confidence 7665 6999999999999865321 011211 245888999999999955 4678999999999999999
Q ss_pred hCCCeeecCCCCChHHHHHHHH---HcCCCCCC-----cCCCCCCHHHHHHHHHHhh-CH---HHHHHHHHHHHHhhcC-
Q 006412 528 AGCPTTVVPFFGDQFFWGDRVQ---QKGLGPAP-----IPISQLTVENLSNAVRFML-QP---EVKSRAMELAKLIENE- 594 (646)
Q Consensus 528 ~GvP~vivP~~~DQ~~nA~~ve---~~G~G~~~-----i~~~~lt~e~L~~aI~~lL-dp---~~r~~A~~la~~l~~~- 594 (646)
+|||+|++|+++||+.||++++ +.|+|+.. ++...+++++|+++|+++| ++ ++|++|+++++.+++.
T Consensus 382 ~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~ 461 (482)
T PLN03007 382 AGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAV 461 (482)
T ss_pred cCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875 34544310 1345689999999999999 76 8999999998887763
Q ss_pred --Cc-HHHHHHHHHHh
Q 006412 595 --DG-VAAAVDAFHRH 607 (646)
Q Consensus 595 --~G-~~~Av~~ie~~ 607 (646)
+| ..+..+.|.+.
T Consensus 462 ~~gGsS~~~l~~~v~~ 477 (482)
T PLN03007 462 EEGGSSFNDLNKFMEE 477 (482)
T ss_pred hCCCcHHHHHHHHHHH
Confidence 44 44444444443
No 17
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.2e-37 Score=344.23 Aligned_cols=391 Identities=18% Similarity=0.220 Sum_probs=237.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh-----------CC---ceEEEcCC-ChHHHHHHH
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS-----------AG---VDFFPLGG-DPRVLAGYM 254 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~-----------~G---l~f~~i~~-~p~~l~~~~ 254 (646)
..||+++|++++||++|++.||+.|+.+|..|||++++.....+.. .+ +.|..++. -|....
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~--- 83 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDP--- 83 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcc---
Confidence 4699999999999999999999999999999999988754443331 11 33433321 111000
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC
Q 006412 255 ARNKGLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY 334 (646)
Q Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~ 334 (646)
. .......+....+....-++.+...... . .-.++|||+|.++.|+..+|+++|||.++|++++.+...
T Consensus 84 ----~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~--~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~ 152 (480)
T PLN02555 84 ----R-RQDLDLYLPQLELVGKREIPNLVKRYAE----Q--GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFS 152 (480)
T ss_pred ----c-ccCHHHHHHHHHHhhhHHHHHHHHHHhc----c--CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHH
Confidence 0 0000000111111122222222221110 0 112489999999999999999999999999988754221
Q ss_pred ---CCCC-----CC-------CCCCcc--cc-hhHHHHHHHH-HHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcc
Q 006412 335 ---EFPH-----PL-------ARVPQS--AG-YWLSYIIVDL-LIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLP 395 (646)
Q Consensus 335 ---~~P~-----pl-------~~ip~~--~~-~~ls~~~~~~-~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip 395 (646)
.+++ +- ..+|.. .. .-+...+... .....+..+++.++. ......+ +..+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~a~~v--lvNTf~eLE 226 (480)
T PLN02555 153 AYYHYYHGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKN----LDKPFCI--LIDTFQELE 226 (480)
T ss_pred HHHHHhhcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHh----cccCCEE--EEEchHHHh
Confidence 1111 10 011110 00 0000000000 000001111222221 1111000 001111111
Q ss_pred cccccCCCCCCCCCCCCCcEEEeCceeccCC---C-----CCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHH
Q 006412 396 TAYMWSPHLVPKPSDWGSLVAVVGYCLLNLG---S-----KYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEII 465 (646)
Q Consensus 396 ~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~---~-----~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i 465 (646)
..++- . +-. .+ + +..+||+..... . .+..+.++.+||++++ ++|||+|||+.....+++.+ +
T Consensus 227 ~~~~~--~-l~~--~~-~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~e-l 298 (480)
T PLN02555 227 KEIID--Y-MSK--LC-P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDE-I 298 (480)
T ss_pred HHHHH--H-Hhh--CC-C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHH-H
Confidence 11110 0 000 11 3 677888754211 1 1234567999999875 49999999998777777655 5
Q ss_pred HHHHHhcCCeEEEEecCC----CC-------CCCCCCCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCe
Q 006412 466 LEALRDTGQRGIIDRGWG----DL-------GKITEVPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPT 532 (646)
Q Consensus 466 ~~Al~~~g~r~Iv~~G~~----~~-------~~l~~~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~ 532 (646)
+.+++..+++|||..+.. +. +.+...++|+++.+|+||.++ |+++++|||||||||++||+++||||
T Consensus 299 a~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~ 378 (480)
T PLN02555 299 AYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPV 378 (480)
T ss_pred HHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCE
Confidence 789999999999985421 01 111235678999999999998 58999999999999999999999999
Q ss_pred eecCCCCChHHHHHHHHH-cCCCCCCcC-----CCCCCHHHHHHHHHHhh-C---HHHHHHHHHHHHHhhc---CCc-HH
Q 006412 533 TVVPFFGDQFFWGDRVQQ-KGLGPAPIP-----ISQLTVENLSNAVRFML-Q---PEVKSRAMELAKLIEN---EDG-VA 598 (646)
Q Consensus 533 vivP~~~DQ~~nA~~ve~-~G~G~~~i~-----~~~lt~e~L~~aI~~lL-d---p~~r~~A~~la~~l~~---~~G-~~ 598 (646)
|++|+++||+.||+++++ +|+|+ .+. ...++.++|.++|+++| + .++|++|++++++.++ ++| ..
T Consensus 379 l~~P~~~DQ~~Na~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~ 457 (480)
T PLN02555 379 VCFPQWGDQVTDAVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSD 457 (480)
T ss_pred EeCCCccccHHHHHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999999999999866 59998 452 34689999999999999 4 4699999999887654 344 55
Q ss_pred HHHHHHHHhcC
Q 006412 599 AAVDAFHRHLP 609 (646)
Q Consensus 599 ~Av~~ie~~L~ 609 (646)
+..+.|.+.+.
T Consensus 458 ~~l~~~v~~i~ 468 (480)
T PLN02555 458 RNFQEFVDKLV 468 (480)
T ss_pred HHHHHHHHHHH
Confidence 56666666553
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1e-36 Score=335.50 Aligned_cols=393 Identities=16% Similarity=0.178 Sum_probs=236.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCch-----hhhh-----hCCceEEEcCCChHHHHHHHhh
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFG--HRVRLATHANFR-----TFVR-----SAGVDFFPLGGDPRVLAGYMAR 256 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rG--H~Vt~~t~~~~~-----~~v~-----~~Gl~f~~i~~~p~~l~~~~~~ 256 (646)
++.||+++|++++||++|++.||+.|+.+| ..|||++++... ..+. ..++.|..++..+. ..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~~----- 75 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE-KP----- 75 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC-CC-----
Confidence 456999999999999999999999999998 999999766432 2222 12588888873111 00
Q ss_pred cCCCCCCCcchHHHHHHH----HHHHHHHHhhhcCCCccccCCCCc-ccEEEECCCccchHHHHHHhCCCEEEEEccCCC
Q 006412 257 NKGLIPSGPGEISIQRKQ----IKAIIESLLPACTDPDIETGVPFR-SQAIIANPPAYGHAHVAEALGVPIHIFFTMPWT 331 (646)
Q Consensus 257 ~~~~~~~~~~~i~~~~~~----~~~ll~~l~~~~~~~d~~~~~~~~-pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~ 331 (646)
..+........+...... +++.+..+..... ...+ ++|||+|.+..|+..+|+++|||.+.|++++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~ 148 (468)
T PLN02207 76 TLGGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLA-------LDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSG 148 (468)
T ss_pred ccccccCHHHHHHHHHHhcchhHHHHHHHHHHHhc-------cCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHH
Confidence 000000000011111111 1222333222110 0012 489999999999999999999999999988743
Q ss_pred CCC---CCCC--------C--C----CCCCcc-cchhHHHHHHHHHH-HHhhHHHHHHHHHHhcCCCCCcccccccCccc
Q 006412 332 PTY---EFPH--------P--L----ARVPQS-AGYWLSYIIVDLLI-WWGIRSYINDFRKRKLKLPPIAYFSTYHGSIS 392 (646)
Q Consensus 332 ~~~---~~P~--------p--l----~~ip~~-~~~~ls~~~~~~~~-~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~ 392 (646)
... .+++ + . -.+|.. ....... +...+. ........+.++. ......+ +..+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~d-lp~~~~~~~~~~~~~~~~~~----~~~~~~v--lvNtf~ 221 (468)
T PLN02207 149 FLAMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNPVPANV-LPSALFVEDGYDAYVKLAIL----FTKANGI--LVNSSF 221 (468)
T ss_pred HHHHHHHhhhccccccccCcCCCCCeEECCCCCCCCChHH-CcchhcCCccHHHHHHHHHh----cccCCEE--EEEchH
Confidence 110 0100 0 0 012210 0000000 000000 0001111111111 1111110 000111
Q ss_pred CcccccccCCCCCCCCCCCCCcEEEeCceeccCCC-C----CCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHH
Q 006412 393 HLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLGS-K----YQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEII 465 (646)
Q Consensus 393 ~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~~-~----~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i 465 (646)
.+...++- . +.. ....+++..+||+...... . ...++++.+||++++ ++|||||||......++ ++.+
T Consensus 222 ~LE~~~~~--~-~~~-~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q-~~el 296 (468)
T PLN02207 222 DIEPYSVN--H-FLD-EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPL-VKEI 296 (468)
T ss_pred HHhHHHHH--H-HHh-ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHH-HHHH
Confidence 11111000 0 000 1112567789988642110 0 012357999999874 69999999998766554 5667
Q ss_pred HHHHHhcCCeEEEEecCCCC---CCC-----CCCCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeec
Q 006412 466 LEALRDTGQRGIIDRGWGDL---GKI-----TEVPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVV 535 (646)
Q Consensus 466 ~~Al~~~g~r~Iv~~G~~~~---~~l-----~~~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~viv 535 (646)
+.+|+.++++|||....... +.+ +..++|+.+.+|+||.++ |+++++|||||||||++||+++|||||++
T Consensus 297 a~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 297 AHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTW 376 (468)
T ss_pred HHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEec
Confidence 99999999999998653211 111 225688899999999999 67799999999999999999999999999
Q ss_pred CCCCChHHHHHHHHH-cCCCCCCcC------C-CCCCHHHHHHHHHHhhC---HHHHHHHHHHHHHhhc---CCc-HHHH
Q 006412 536 PFFGDQFFWGDRVQQ-KGLGPAPIP------I-SQLTVENLSNAVRFMLQ---PEVKSRAMELAKLIEN---EDG-VAAA 600 (646)
Q Consensus 536 P~~~DQ~~nA~~ve~-~G~G~~~i~------~-~~lt~e~L~~aI~~lLd---p~~r~~A~~la~~l~~---~~G-~~~A 600 (646)
|+++||+.||+++++ +|+|+. +. . ..++.++|+++|+++|+ ++||++|+++++++++ ++| ..+.
T Consensus 377 P~~~DQ~~Na~~~~~~~gvGv~-~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~ 455 (468)
T PLN02207 377 PMYAEQQLNAFLMVKELKLAVE-LKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAA 455 (468)
T ss_pred CccccchhhHHHHHHHhCceEE-EecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999998655 999972 31 1 23599999999999993 7899999999998884 555 3444
Q ss_pred HHHHHHh
Q 006412 601 VDAFHRH 607 (646)
Q Consensus 601 v~~ie~~ 607 (646)
.+.|.+.
T Consensus 456 l~~~v~~ 462 (468)
T PLN02207 456 IEKFIHD 462 (468)
T ss_pred HHHHHHH
Confidence 4444443
No 19
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.1e-37 Score=337.03 Aligned_cols=375 Identities=15% Similarity=0.196 Sum_probs=231.1
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCchhhh-----hhCCceEEEcCCChHHHHHHHhhcCCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQ-EFGHRVRLATHANFRTFV-----RSAGVDFFPLGGDPRVLAGYMARNKGLIP 262 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~-~rGH~Vt~~t~~~~~~~v-----~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~ 262 (646)
.+.||+++|++++||++|++.||+.|. .+|++|||++++.....+ ...++.++.++.. . . .++.+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p-~-~-------~glp~ 74 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSP-D-I-------SGLVD 74 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCc-c-c-------cCCCC
Confidence 346999999999999999999999998 789999999877554333 2236888877631 1 0 11110
Q ss_pred CCcc---hHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCC---CCC
Q 006412 263 SGPG---EISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPT---YEF 336 (646)
Q Consensus 263 ~~~~---~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~---~~~ 336 (646)
.... .+......+.+-++.+.... .-+|+|||+|.++.|+..+|+++|||++.|++++.... ..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 145 (481)
T PLN02992 75 PSAHVVTKIGVIMREAVPTLRSKIAEM---------HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYY 145 (481)
T ss_pred CCccHHHHHHHHHHHhHHHHHHHHHhc---------CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhh
Confidence 1100 11111111112222222111 01579999999999999999999999999998774321 011
Q ss_pred C-----CC--------CCCCCcccchhHHHHHHHHHHH---HhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccc-
Q 006412 337 P-----HP--------LARVPQSAGYWLSYIIVDLLIW---WGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYM- 399 (646)
Q Consensus 337 P-----~p--------l~~ip~~~~~~ls~~~~~~~~~---~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~- 399 (646)
| .. .-.+|......... +...+.. .....+...++. ......+ +..+...+...++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~d-lp~~~~~~~~~~~~~~~~~~~~----~~~a~gv--lvNTf~eLE~~~l~ 218 (481)
T PLN02992 146 PTLDKDIKEEHTVQRKPLAMPGCEPVRFED-TLDAYLVPDEPVYRDFVRHGLA----YPKADGI--LVNTWEEMEPKSLK 218 (481)
T ss_pred hhhccccccccccCCCCcccCCCCccCHHH-hhHhhcCCCcHHHHHHHHHHHh----cccCCEE--EEechHHHhHHHHH
Confidence 1 00 00122110000000 0000000 001111111111 1111110 0011111111111
Q ss_pred -cCC-CCCCCCCCCCCcEEEeCceeccCCCCCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCe
Q 006412 400 -WSP-HLVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRDTGQR 475 (646)
Q Consensus 400 -~sp-~l~p~p~d~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r 475 (646)
+.. ....+ -.++.+..+||+...... ...+.++.+||++++ ++|||||||+.....+++ +.++.+|+.++++
T Consensus 219 ~l~~~~~~~~--~~~~~v~~VGPl~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~-~ela~gL~~s~~~ 294 (481)
T PLN02992 219 SLQDPKLLGR--VARVPVYPIGPLCRPIQS-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQL-TELAWGLEMSQQR 294 (481)
T ss_pred HHhhcccccc--ccCCceEEecCccCCcCC-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHH-HHHHHHHHHcCCC
Confidence 000 00110 012347789998643211 123456999999874 599999999977776666 4569999999999
Q ss_pred EEEEecCC--C--------------CCC-CCCCCC---------cEEEeccCCcccc--cccccEEEEcCchhHHHHHHH
Q 006412 476 GIIDRGWG--D--------------LGK-ITEVPD---------NIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLK 527 (646)
Q Consensus 476 ~Iv~~G~~--~--------------~~~-l~~~p~---------nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~ 527 (646)
|||..... + .+. ...+|+ ++.+.+|+||.++ |+++++|||||||||++|+++
T Consensus 295 flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~ 374 (481)
T PLN02992 295 FVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVV 374 (481)
T ss_pred EEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHH
Confidence 99986321 0 000 112455 4788899999999 566778999999999999999
Q ss_pred hCCCeeecCCCCChHHHHHHH-HHcCCCCCCcCC--CCCCHHHHHHHHHHhh-C---HHHHHHHHHHHHHhhc
Q 006412 528 AGCPTTVVPFFGDQFFWGDRV-QQKGLGPAPIPI--SQLTVENLSNAVRFML-Q---PEVKSRAMELAKLIEN 593 (646)
Q Consensus 528 ~GvP~vivP~~~DQ~~nA~~v-e~~G~G~~~i~~--~~lt~e~L~~aI~~lL-d---p~~r~~A~~la~~l~~ 593 (646)
+|||+|++|+++||+.||+++ +++|+|+ .++. ..++.++|+++|+++| + .++|+++++++++.++
T Consensus 375 ~GVP~l~~P~~~DQ~~na~~~~~~~g~gv-~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~ 446 (481)
T PLN02992 375 GGVPMIAWPLFAEQNMNAALLSDELGIAV-RSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEM 446 (481)
T ss_pred cCCCEEecCccchhHHHHHHHHHHhCeeE-EecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 5999998 5654 3589999999999999 5 3688888888776653
No 20
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-36 Score=332.39 Aligned_cols=385 Identities=16% Similarity=0.215 Sum_probs=231.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhh---hCCceEEEcCCC-hHHHHHHHhhcCCCCCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVR---SAGVDFFPLGGD-PRVLAGYMARNKGLIPSG 264 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~---~~Gl~f~~i~~~-p~~l~~~~~~~~~~~~~~ 264 (646)
++.||+++|++++||++||+.||+.|+.+|+.|||++++.....+. ..++.|+.++.. |..... +. ...
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~----~~---~~~ 76 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFS----SA---GSV 76 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccc----cc---cCH
Confidence 4579999999999999999999999999999999998775433332 135888887531 110000 00 000
Q ss_pred cchHH----HHHHHHHHHHHHHhhhcCCCccccCCCCcc-cEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC-----
Q 006412 265 PGEIS----IQRKQIKAIIESLLPACTDPDIETGVPFRS-QAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY----- 334 (646)
Q Consensus 265 ~~~i~----~~~~~~~~ll~~l~~~~~~~d~~~~~~~~p-D~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~----- 334 (646)
...+. .....+++++..+.. ..+| +|||+|.+..|+..+|+++|||.+.|++++.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~ 145 (449)
T PLN02173 77 PEYLQNFKTFGSKTVADIIRKHQS-----------TDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS 145 (449)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhc-----------cCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH
Confidence 00111 112233333332210 1234 99999999999999999999999999986532110
Q ss_pred -----CCCCCCCCCCcccchhHHHHHHHH-HHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCC
Q 006412 335 -----EFPHPLARVPQSAGYWLSYIIVDL-LIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKP 408 (646)
Q Consensus 335 -----~~P~pl~~ip~~~~~~ls~~~~~~-~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p 408 (646)
..+.++..+|.....-+...+.+. -.-.....+++.++. +.....+ ...+...+...++- . +.
T Consensus 146 ~~~~~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v--lvNTf~eLE~~~~~--~-~~-- 214 (449)
T PLN02173 146 YINNGSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTN----FDKADFV--LVNSFHDLDLHENE--L-LS-- 214 (449)
T ss_pred HhccCCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhh----hccCCEE--EEeCHHHhhHHHHH--H-HH--
Confidence 011111122210000000000000 000000111112211 1111100 00111111111110 0 00
Q ss_pred CCCCCcEEEeCceecc--------CCCC-----C--CCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHh
Q 006412 409 SDWGSLVAVVGYCLLN--------LGSK-----Y--QPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRD 471 (646)
Q Consensus 409 ~d~~p~v~~vG~~~~~--------~~~~-----~--~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~ 471 (646)
.. +.+..+||+... .... + ...+++.+||++++ ++|||||||+.....+++.+ ++.+|
T Consensus 215 -~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~e-la~gL-- 289 (449)
T PLN02173 215 -KV-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEE-IASAI-- 289 (449)
T ss_pred -hc-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHH-HHHHh--
Confidence 01 135567777421 0000 0 22346899999865 59999999998777666554 58888
Q ss_pred cCCeEEEEecCCCCC-----CCCCC-CCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHH
Q 006412 472 TGQRGIIDRGWGDLG-----KITEV-PDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFF 543 (646)
Q Consensus 472 ~g~r~Iv~~G~~~~~-----~l~~~-p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~ 543 (646)
.+.+|||.......+ .++.. ++|+.+.+|+||.++ |+.+++|||||||||++|++++|||+|++|+++||+.
T Consensus 290 s~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~ 369 (449)
T PLN02173 290 SNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPM 369 (449)
T ss_pred cCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchH
Confidence 677899876422111 11223 578999999999999 5567799999999999999999999999999999999
Q ss_pred HHHHHHH-cCCCCCCcCCC----CCCHHHHHHHHHHhh-C---HHHHHHHHHHHHHhhc---CCc-HHHHHHHHHHhc
Q 006412 544 WGDRVQQ-KGLGPAPIPIS----QLTVENLSNAVRFML-Q---PEVKSRAMELAKLIEN---EDG-VAAAVDAFHRHL 608 (646)
Q Consensus 544 nA~~ve~-~G~G~~~i~~~----~lt~e~L~~aI~~lL-d---p~~r~~A~~la~~l~~---~~G-~~~Av~~ie~~L 608 (646)
||+++++ +|+|+ .+... .++.++|+++|+++| + .++|++|++++++.++ ++| ..+..+.|.+.+
T Consensus 370 Na~~v~~~~g~Gv-~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 370 NAKYIQDVWKVGV-RVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred HHHHHHHHhCceE-EEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999975 48887 44322 269999999999999 5 4689999999888874 455 455555555544
No 21
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=8.8e-37 Score=335.30 Aligned_cols=384 Identities=17% Similarity=0.219 Sum_probs=229.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHh-CCCEEEEEeCCC-c-hhhhhh----CCceEEEcCCC-hHHHHHHHhhcCCCC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQE-FGHRVRLATHAN-F-RTFVRS----AGVDFFPLGGD-PRVLAGYMARNKGLI 261 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~-rGH~Vt~~t~~~-~-~~~v~~----~Gl~f~~i~~~-p~~l~~~~~~~~~~~ 261 (646)
+.||+++|++++||++|++.||+.|+. +|+.|||++++. . +..+.. .++.|..++.. |.... ...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~-------~~~ 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVI-------SNT 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccc-------ccc
Confidence 359999999999999999999999996 799999998773 2 322221 15778877521 11000 000
Q ss_pred CCCcchHHHH----HHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC---
Q 006412 262 PSGPGEISIQ----RKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY--- 334 (646)
Q Consensus 262 ~~~~~~i~~~----~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~--- 334 (646)
......+... ...+.++++.+. .. . -+++|||+|.+..|+..+|+++|||.+.|+|++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~l~----~~----~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~ 145 (455)
T PLN02152 76 DDVQNRLVNFERNGDKALSDFIEANL----NG----D--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYY 145 (455)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhh----cc----C--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0000011111 123333333211 00 0 13589999999999999999999999999998753211
Q ss_pred CCCC---CCCCCCcccc---hhH-HHHHH---HHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCC
Q 006412 335 EFPH---PLARVPQSAG---YWL-SYIIV---DLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHL 404 (646)
Q Consensus 335 ~~P~---pl~~ip~~~~---~~l-s~~~~---~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l 404 (646)
.++. ....+|.... ..+ ++... +......+....+.+++ . .. ..+ +..+...+...++- .
T Consensus 146 ~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~v--lvNTf~eLE~~~~~--~- 215 (455)
T PLN02152 146 NYSTGNNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKE--E--SN-PKI--LVNTFDSLEPEFLT--A- 215 (455)
T ss_pred HhhccCCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhh--c--cC-CEE--EEeChHHhhHHHHH--h-
Confidence 1100 0001221100 000 00000 00000111111122111 0 00 000 00111111111110 0
Q ss_pred CCCCCCCCCcEEEeCceeccC---CC---C----CCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHHhc
Q 006412 405 VPKPSDWGSLVAVVGYCLLNL---GS---K----YQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALRDT 472 (646)
Q Consensus 405 ~p~p~d~~p~v~~vG~~~~~~---~~---~----~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~~~ 472 (646)
+. . ..+..+||+.+.. .. . .+.+.++.+||++++ ++|||||||+.....+++ +.++.+|+.+
T Consensus 216 l~---~--~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~-~ela~gL~~s 289 (455)
T PLN02152 216 IP---N--IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQI-EELARALIEG 289 (455)
T ss_pred hh---c--CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHH-HHHHHHHHHc
Confidence 00 0 1366788875321 00 0 122347999999874 799999999987666665 5569999999
Q ss_pred CCeEEEEecCCC--------C--------CC-CCCCCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCee
Q 006412 473 GQRGIIDRGWGD--------L--------GK-ITEVPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPTT 533 (646)
Q Consensus 473 g~r~Iv~~G~~~--------~--------~~-l~~~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~v 533 (646)
+++|||...... . +. .+..++|+++.+|+||.++ |+++.+|||||||||++|++++|||+|
T Consensus 290 ~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l 369 (455)
T PLN02152 290 KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVV 369 (455)
T ss_pred CCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEE
Confidence 999999854210 0 00 1125688899999999999 677889999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHH-cCCCCC-CcCC-CCCCHHHHHHHHHHhh-CH--HHHHHHHHHHHHhhc---CCc-HHHHHHH
Q 006412 534 VVPFFGDQFFWGDRVQQ-KGLGPA-PIPI-SQLTVENLSNAVRFML-QP--EVKSRAMELAKLIEN---EDG-VAAAVDA 603 (646)
Q Consensus 534 ivP~~~DQ~~nA~~ve~-~G~G~~-~i~~-~~lt~e~L~~aI~~lL-dp--~~r~~A~~la~~l~~---~~G-~~~Av~~ 603 (646)
++|+++||+.||+++++ +|+|+. .... +.++.++|+++|+++| ++ ++|++|++++++.++ ++| ..+..+.
T Consensus 370 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~ 449 (455)
T PLN02152 370 AFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEA 449 (455)
T ss_pred eccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 99999999999999976 455542 1222 2469999999999999 54 489999777666655 344 3444444
Q ss_pred HHH
Q 006412 604 FHR 606 (646)
Q Consensus 604 ie~ 606 (646)
|.+
T Consensus 450 li~ 452 (455)
T PLN02152 450 FVK 452 (455)
T ss_pred HHH
Confidence 443
No 22
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-36 Score=336.59 Aligned_cols=392 Identities=17% Similarity=0.212 Sum_probs=234.7
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCC----CEEEEEeCCCc--------hhhhh---hC--CceEEEcCCChHHHH
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFG----HRVRLATHANF--------RTFVR---SA--GVDFFPLGGDPRVLA 251 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rG----H~Vt~~t~~~~--------~~~v~---~~--Gl~f~~i~~~p~~l~ 251 (646)
++.||+++|++++||++|++.||+.|+.+| +.|||++.+.. ...+. .. ++.|.+++... +
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~- 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE--P- 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC--C-
Confidence 567999999999999999999999999997 78999976532 11111 11 47888886321 0
Q ss_pred HHHhhcCCCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCC
Q 006412 252 GYMARNKGLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWT 331 (646)
Q Consensus 252 ~~~~~~~~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~ 331 (646)
..+. ......+..........++.+.... .-+++|||+|.+..|+..+|+++|||.+.|+|++..
T Consensus 79 -----p~~~-e~~~~~~~~~~~~~~~~l~~~L~~l---------~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~ 143 (480)
T PLN00164 79 -----PTDA-AGVEEFISRYIQLHAPHVRAAIAGL---------SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAA 143 (480)
T ss_pred -----CCcc-ccHHHHHHHHHHhhhHHHHHHHHhc---------CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHH
Confidence 0000 0000001111111222222221111 014689999999999999999999999999988743
Q ss_pred CC---CCCCC-------CCC------CCCcc--c-chhHHHHHHHH--HHHHhhHHHHHHHHHHhcCCCCCcccccccCc
Q 006412 332 PT---YEFPH-------PLA------RVPQS--A-GYWLSYIIVDL--LIWWGIRSYINDFRKRKLKLPPIAYFSTYHGS 390 (646)
Q Consensus 332 ~~---~~~P~-------pl~------~ip~~--~-~~~ls~~~~~~--~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~ 390 (646)
.. +.+|. +.. .+|.. . ...+....... .....+....+++++ ...+ ...+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-------~~~v--lvNT 214 (480)
T PLN00164 144 MLALMLRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFME-------AAGI--IVNT 214 (480)
T ss_pred HHHHHhhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhh-------cCEE--EEec
Confidence 21 11110 000 01110 0 00000000000 000000001111111 0000 0011
Q ss_pred ccCcccccc--cCCCC-CCCCCCCCCcEEEeCceeccC--CCCCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHH
Q 006412 391 ISHLPTAYM--WSPHL-VPKPSDWGSLVAVVGYCLLNL--GSKYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTE 463 (646)
Q Consensus 391 ~~~ip~~~~--~sp~l-~p~p~d~~p~v~~vG~~~~~~--~~~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~ 463 (646)
...+...++ +.... .+. .. .+.+..+||+.... ......+.++.+||++++ ++|||+|||......++ ++
T Consensus 215 f~eLE~~~~~~~~~~~~~~~-~~-~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q-~~ 291 (480)
T PLN00164 215 AAELEPGVLAAIADGRCTPG-RP-APTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQ-VR 291 (480)
T ss_pred hHHhhHHHHHHHHhcccccc-CC-CCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHH-HH
Confidence 111111110 11100 010 00 14577889885311 111223567999999874 58999999997777777 55
Q ss_pred HHHHHHHhcCCeEEEEecCCCC--------CCC-CCCCCc---------EEEeccCCcccc--cccccEEEEcCchhHHH
Q 006412 464 IILEALRDTGQRGIIDRGWGDL--------GKI-TEVPDN---------IFLLEDCPHDWL--FPQCSAVVHHGGAGTTA 523 (646)
Q Consensus 464 ~i~~Al~~~g~r~Iv~~G~~~~--------~~l-~~~p~n---------V~i~~~vPq~~L--l~~a~~vI~HGG~gTt~ 523 (646)
.++.+|+.++++|||....... ... ..+|++ +.+.+|+||.++ |+++++|||||||||++
T Consensus 292 ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~ 371 (480)
T PLN00164 292 EIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVL 371 (480)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHH
Confidence 6799999999999988543210 011 114444 666699999999 45577999999999999
Q ss_pred HHHHhCCCeeecCCCCChHHHHHHH-HHcCCCCCCcCC-----CCCCHHHHHHHHHHhh-CH-----HHHHHHHHHHHHh
Q 006412 524 TGLKAGCPTTVVPFFGDQFFWGDRV-QQKGLGPAPIPI-----SQLTVENLSNAVRFML-QP-----EVKSRAMELAKLI 591 (646)
Q Consensus 524 EaL~~GvP~vivP~~~DQ~~nA~~v-e~~G~G~~~i~~-----~~lt~e~L~~aI~~lL-dp-----~~r~~A~~la~~l 591 (646)
|++++|||||++|+++||+.||+++ +++|+|+ .+.. +.++.++|+++|+++| ++ ++|++|+++++++
T Consensus 372 Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~ 450 (480)
T PLN00164 372 ESLWHGVPMAPWPLYAEQHLNAFELVADMGVAV-AMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAAC 450 (480)
T ss_pred HHHHcCCCEEeCCccccchhHHHHHHHHhCeEE-EeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 6689998 4432 2379999999999999 53 3799999998877
Q ss_pred hcC---Cc-HHHHHHHHHHhcCCC
Q 006412 592 ENE---DG-VAAAVDAFHRHLPDE 611 (646)
Q Consensus 592 ~~~---~G-~~~Av~~ie~~L~~~ 611 (646)
++. +| ..+..+.|.+.+..+
T Consensus 451 ~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 451 RKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHhc
Confidence 663 44 566666666655433
No 23
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-36 Score=337.29 Aligned_cols=395 Identities=16% Similarity=0.218 Sum_probs=232.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCC---EEEEEeCC-Cc----hhhhhh-----CCceEEEcCCChHHHHHHHhh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGH---RVRLATHA-NF----RTFVRS-----AGVDFFPLGGDPRVLAGYMAR 256 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH---~Vt~~t~~-~~----~~~v~~-----~Gl~f~~i~~~p~~l~~~~~~ 256 (646)
..||+++|++++||++||+.||+.|+.+|. .||++++. ++ +..+.. .++.|..++..... .. ..
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p-~~-~~- 79 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDP-PP-ME- 79 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCC-cc-cc-
Confidence 459999999999999999999999999994 45665432 11 222322 25888888632100 00 00
Q ss_pred cCCCCCCCcchHHH----HHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCC
Q 006412 257 NKGLIPSGPGEISI----QRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTP 332 (646)
Q Consensus 257 ~~~~~~~~~~~i~~----~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~ 332 (646)
.........+.. ....+++.++.+...... .. +-+++|||+|.++.|+..+|+++|||.+.|+|++.+.
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~----~~-~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~ 152 (475)
T PLN02167 80 --LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDE----SD-SVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGF 152 (475)
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccc----cC-CCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHH
Confidence 000000001111 122233333332211000 00 1135899999999999999999999999999987431
Q ss_pred CC---C-------CC-C-CC------CCCCcc---cc-hhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCc
Q 006412 333 TY---E-------FP-H-PL------ARVPQS---AG-YWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGS 390 (646)
Q Consensus 333 ~~---~-------~P-~-pl------~~ip~~---~~-~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~ 390 (646)
.. . .+ . +. ..+|.. .. ..+.....+. ......+..++. . .....+ ...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~---~~~~~~~~~~~~--~--~~a~~v--lvNT 223 (475)
T PLN02167 153 LGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK---ESYEAWVEIAER--F--PEAKGI--LVNS 223 (475)
T ss_pred HHHHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc---chHHHHHHHHHh--h--cccCEe--eecc
Confidence 10 0 11 0 00 001210 00 0000000000 000111111111 0 000000 0011
Q ss_pred ccCcccccccCCCCCCCCCCCCCcEEEeCceeccCCC---C--CCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHH
Q 006412 391 ISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLGS---K--YQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTE 463 (646)
Q Consensus 391 ~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~~---~--~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~ 463 (646)
...+...++- .+-.....+ +.+..+||+...... . .....++.+||++++ ++|||+|||+.....+++.+
T Consensus 224 f~eLE~~~~~--~l~~~~~~~-p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e 300 (475)
T PLN02167 224 FTELEPNAFD--YFSRLPENY-PPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKE 300 (475)
T ss_pred HHHHHHHHHH--HHHhhcccC-CeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHH
Confidence 1111111110 000000112 457788988542110 0 112257999999875 59999999997777776555
Q ss_pred HHHHHHHhcCCeEEEEecCCCC---CCCCCCCC--------cEEEeccCCccccc--ccccEEEEcCchhHHHHHHHhCC
Q 006412 464 IILEALRDTGQRGIIDRGWGDL---GKITEVPD--------NIFLLEDCPHDWLF--PQCSAVVHHGGAGTTATGLKAGC 530 (646)
Q Consensus 464 ~i~~Al~~~g~r~Iv~~G~~~~---~~l~~~p~--------nV~i~~~vPq~~Ll--~~a~~vI~HGG~gTt~EaL~~Gv 530 (646)
++.+|+.++++|||..+.... .....+|+ ++++++|+||.+++ +++++|||||||||++||+++||
T Consensus 301 -la~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 301 -IAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred -HHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 599999999999998653211 01112444 35788999999995 66889999999999999999999
Q ss_pred CeeecCCCCChHHHHHH-HHHcCCCCCCcCC-------CCCCHHHHHHHHHHhh-CH-HHHHHHHHHHHHhhc---CCc-
Q 006412 531 PTTVVPFFGDQFFWGDR-VQQKGLGPAPIPI-------SQLTVENLSNAVRFML-QP-EVKSRAMELAKLIEN---EDG- 596 (646)
Q Consensus 531 P~vivP~~~DQ~~nA~~-ve~~G~G~~~i~~-------~~lt~e~L~~aI~~lL-dp-~~r~~A~~la~~l~~---~~G- 596 (646)
|||++|+++||+.||++ ++++|+|+ .+.. ..+++++|+++|+++| ++ ++|++|+++++.+++ ++|
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~~g~g~-~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKELGLAV-ELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred CEEeccccccchhhHHHHHHHhCeeE-EeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999976 78999998 4542 2479999999999999 44 799999999887766 344
Q ss_pred HHHHHHHHHHhc
Q 006412 597 VAAAVDAFHRHL 608 (646)
Q Consensus 597 ~~~Av~~ie~~L 608 (646)
..+..+.|.+.+
T Consensus 459 S~~~l~~~v~~i 470 (475)
T PLN02167 459 SFVAVKRFIDDL 470 (475)
T ss_pred HHHHHHHHHHHH
Confidence 455556555544
No 24
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-36 Score=333.53 Aligned_cols=376 Identities=13% Similarity=0.148 Sum_probs=224.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCC--CEEEEE--eCCCchhh----hhh-----CCceEEEcCCChHHHHHHHhh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFG--HRVRLA--THANFRTF----VRS-----AGVDFFPLGGDPRVLAGYMAR 256 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rG--H~Vt~~--t~~~~~~~----v~~-----~Gl~f~~i~~~p~~l~~~~~~ 256 (646)
.-||+++|++++||++||+.||+.|+.+| +.|++. ++...... +.. .++.|..++... ...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~~----- 76 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT-PYS----- 76 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC-CCC-----
Confidence 35899999999999999999999999998 566664 33321111 111 257888775321 000
Q ss_pred cCCCCCC-Cc-chHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC
Q 006412 257 NKGLIPS-GP-GEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY 334 (646)
Q Consensus 257 ~~~~~~~-~~-~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~ 334 (646)
.+.... .. ..+.........-+..+..... ..-.++|||+|++..|+..+|+++|||.+.|++++.+...
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~ 148 (451)
T PLN03004 77 -SSSTSRHHHESLLLEILCFSNPSVHRTLFSLS-------RNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLA 148 (451)
T ss_pred -CccccccCHHHHHHHHHHhhhHHHHHHHHhcC-------CCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHH
Confidence 000000 00 0111111112222222222111 0113589999999999999999999999999988743211
Q ss_pred ---CCC-------CC-CC-----CCCcccc---hhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcc
Q 006412 335 ---EFP-------HP-LA-----RVPQSAG---YWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLP 395 (646)
Q Consensus 335 ---~~P-------~p-l~-----~ip~~~~---~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip 395 (646)
.+| .. .. .+|..-. .-+.....+.. ..........++. +.....+ ...+...+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~-~~~~~~~~~~~~~----~~~~~~v--l~NTf~eLE 221 (451)
T PLN03004 149 FSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERD-DEVYDVFIMFGKQ----LSKSSGI--IINTFDALE 221 (451)
T ss_pred HHHHHHhccccccccccccCCeecCCCCCCCChHHCchhhcCCc-hHHHHHHHHHHHh----hcccCee--eeeeHHHhH
Confidence 111 00 00 1111000 00000000000 0000001111111 1101000 001111111
Q ss_pred cccccCCCCCCCCCCC-CCcEEEeCceeccCC-C-C-CCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHH
Q 006412 396 TAYMWSPHLVPKPSDW-GSLVAVVGYCLLNLG-S-K-YQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEAL 469 (646)
Q Consensus 396 ~~~~~sp~l~p~p~d~-~p~v~~vG~~~~~~~-~-~-~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al 469 (646)
..++- .+-. .+ .+.+..+||+..... . . ...+.++.+||++++ ++|||||||+.....+++ +.++.+|
T Consensus 222 ~~~l~--~l~~---~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~-~ela~gL 295 (451)
T PLN03004 222 NRAIK--AITE---ELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQV-IEIAVGL 295 (451)
T ss_pred HHHHH--HHHh---cCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHH-HHHHHHH
Confidence 11110 0000 11 135778899864211 1 1 112346899999874 699999999977776665 4569999
Q ss_pred HhcCCeEEEEecCC-CCC----CCCC-CC---------CcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCCCe
Q 006412 470 RDTGQRGIIDRGWG-DLG----KITE-VP---------DNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGCPT 532 (646)
Q Consensus 470 ~~~g~r~Iv~~G~~-~~~----~l~~-~p---------~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~GvP~ 532 (646)
+.++++|||..... ..+ .... +| .|+.+.+|+||.++ |+++++|||||||||++|++++|||+
T Consensus 296 ~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~ 375 (451)
T PLN03004 296 EKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPM 375 (451)
T ss_pred HHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCE
Confidence 99999999986532 100 1111 34 57888899999999 55666699999999999999999999
Q ss_pred eecCCCCChHHHHHHHH-HcCCCCCCcCCC---CCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhc
Q 006412 533 TVVPFFGDQFFWGDRVQ-QKGLGPAPIPIS---QLTVENLSNAVRFML-QPEVKSRAMELAKLIEN 593 (646)
Q Consensus 533 vivP~~~DQ~~nA~~ve-~~G~G~~~i~~~---~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~ 593 (646)
|++|+++||+.||++++ ++|+|+ .++.. .+++++|+++|+++| +++||++|++++++.+.
T Consensus 376 v~~P~~~DQ~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 376 VAWPLYAEQRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred EeccccccchhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999996 579998 56533 579999999999999 99999999999877654
No 25
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-35 Score=328.80 Aligned_cols=396 Identities=17% Similarity=0.205 Sum_probs=237.2
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh---------CCceEEEcCCCh--HHHHHHHhhc
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS---------AGVDFFPLGGDP--RVLAGYMARN 257 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~---------~Gl~f~~i~~~p--~~l~~~~~~~ 257 (646)
.++||+++|++++||++||+.||+.|+.+|+.|||++++.....+.. .++.|..++... ..+..-.. +
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~-~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE-N 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc-c
Confidence 34699999999999999999999999999999999988765433322 137788776210 01100000 0
Q ss_pred CCCCCCCcchHHHHHH---HHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC
Q 006412 258 KGLIPSGPGEISIQRK---QIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY 334 (646)
Q Consensus 258 ~~~~~~~~~~i~~~~~---~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~ 334 (646)
....+.. ..+..... .+...+..+.... .-+|+|||+|.++.|+..+|+.+|||.+.|++++.+...
T Consensus 86 ~~~~~~~-~~~~~~~~~~~~l~~~l~~lL~~~---------~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~ 155 (491)
T PLN02534 86 LDTLPSR-DLLRKFYDAVDKLQQPLERFLEQA---------KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLL 155 (491)
T ss_pred cccCCcH-HHHHHHHHHHHHhHHHHHHHHHhc---------CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHH
Confidence 0000100 00111111 1222222222110 125799999999999999999999999999987643211
Q ss_pred -------CCCCC----------CCCCCcccchhHHHHHHHHHHH-HhhHHHHHHHHHHhcCCCCCcccccccCcccCccc
Q 006412 335 -------EFPHP----------LARVPQSAGYWLSYIIVDLLIW-WGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPT 396 (646)
Q Consensus 335 -------~~P~p----------l~~ip~~~~~~ls~~~~~~~~~-~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~ 396 (646)
..++. +..+|........ .+...+.+ .....+.+.++. ...... ..+..+...+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~-dlp~~~~~~~~~~~~~~~~~~----~~~~a~-~vlvNTf~eLE~ 229 (491)
T PLN02534 156 SSHNIRLHNAHLSVSSDSEPFVVPGMPQSIEITRA-QLPGAFVSLPDLDDVRNKMRE----AESTAF-GVVVNSFNELEH 229 (491)
T ss_pred HHHHHHHhcccccCCCCCceeecCCCCccccccHH-HCChhhcCcccHHHHHHHHHh----hcccCC-EEEEecHHHhhH
Confidence 00100 0111110000000 00000000 011112222221 000000 000011111111
Q ss_pred ccccCCCCCCCCCCCCCcEEEeCceeccCC--------C-CCC-CchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHH
Q 006412 397 AYMWSPHLVPKPSDWGSLVAVVGYCLLNLG--------S-KYQ-PQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEI 464 (646)
Q Consensus 397 ~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~--------~-~~~-~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~ 464 (646)
.++- . + ...+++.+..+||+..... . ... ...++.+||++++ ++|||+|||+....++++.++
T Consensus 230 ~~l~--~-l--~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~ 304 (491)
T PLN02534 230 GCAE--A-Y--EKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIEL 304 (491)
T ss_pred HHHH--H-H--HhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 1110 0 0 0123345777888753110 0 011 2346889999874 699999999988888888776
Q ss_pred HHHHHHhcCCeEEEEecCCC---------C-CCCC-C-CCCcEEEeccCCcccc--cccccEEEEcCchhHHHHHHHhCC
Q 006412 465 ILEALRDTGQRGIIDRGWGD---------L-GKIT-E-VPDNIFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAGC 530 (646)
Q Consensus 465 i~~Al~~~g~r~Iv~~G~~~---------~-~~l~-~-~p~nV~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~Gv 530 (646)
+.+|+.++++|||...... + +.+. . .+.++++.+|+||..+ |+++.+|||||||||++||+++||
T Consensus 305 -a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~Gv 383 (491)
T PLN02534 305 -GLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGV 383 (491)
T ss_pred -HHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCC
Confidence 5999999999999865210 0 1111 1 2467778899999999 555777999999999999999999
Q ss_pred CeeecCCCCChHHHHHHH-HHcCCCCCCcC------C------C-CCCHHHHHHHHHHhhC------HHHHHHHHHHHHH
Q 006412 531 PTTVVPFFGDQFFWGDRV-QQKGLGPAPIP------I------S-QLTVENLSNAVRFMLQ------PEVKSRAMELAKL 590 (646)
Q Consensus 531 P~vivP~~~DQ~~nA~~v-e~~G~G~~~i~------~------~-~lt~e~L~~aI~~lLd------p~~r~~A~~la~~ 590 (646)
|+|++|+++||+.||+++ +.+|+|+. +. . . ..++++|+++|+++|. .++|+||++++++
T Consensus 384 P~v~~P~~~dq~~na~~~~e~~~vGv~-~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~ 462 (491)
T PLN02534 384 PMITWPLFAEQFLNEKLIVEVLRIGVR-VGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVM 462 (491)
T ss_pred CEEeccccccHHHHHHHHHHhhcceEE-ecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999999999997 57888873 31 1 1 3799999999999993 4799999999887
Q ss_pred hhc---CCc-HHHHHHHHHHhc
Q 006412 591 IEN---EDG-VAAAVDAFHRHL 608 (646)
Q Consensus 591 l~~---~~G-~~~Av~~ie~~L 608 (646)
+++ ++| ..+..+.|.+.+
T Consensus 463 a~~Av~~GGSS~~nl~~fv~~i 484 (491)
T PLN02534 463 ARKAMELGGSSHINLSILIQDV 484 (491)
T ss_pred HHHHhcCCCcHHHHHHHHHHHH
Confidence 766 344 455555555544
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.8e-34 Score=323.70 Aligned_cols=439 Identities=19% Similarity=0.208 Sum_probs=264.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh-CCce-EEEcCCChHHHHHHHhhcCCCCCCCcch
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS-AGVD-FFPLGGDPRVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~-~Gl~-f~~i~~~p~~l~~~~~~~~~~~~~~~~~ 267 (646)
..++++++++++||++|++.+|+.|+++||+||+++.......... .... ...+...... +.....++ +.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~ 80 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFE---FLTIPDGL-PEGWED 80 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHH---hhhhhhhh-ccchHH
Confidence 5678888899999999999999999999999999977654333222 1111 1111111100 00000111 111000
Q ss_pred H-HHHHHHHHHHHHHHhhhcCCCc--cccCCCCcccEEEECCCccchHHHHHHhC-CCEEEEEccCCCC-CCCCCCCCCC
Q 006412 268 I-SIQRKQIKAIIESLLPACTDPD--IETGVPFRSQAIIANPPAYGHAHVAEALG-VPIHIFFTMPWTP-TYEFPHPLAR 342 (646)
Q Consensus 268 i-~~~~~~~~~ll~~l~~~~~~~d--~~~~~~~~pD~IIad~~~~~~~~vA~~lG-IP~v~~~t~p~~~-~~~~P~pl~~ 342 (646)
. .............+.....+.. .......++|++|+|++..+...+|...+ |+...+.+..+.. ..++|.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~ 160 (496)
T KOG1192|consen 81 DDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccc
Confidence 0 0000001122222211111111 01111223999999997666556665554 8887777665432 2344444444
Q ss_pred CCcccc------hhHHHHHHHHHHH---HhhH-----HHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCC-
Q 006412 343 VPQSAG------YWLSYIIVDLLIW---WGIR-----SYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPK- 407 (646)
Q Consensus 343 ip~~~~------~~ls~~~~~~~~~---~~~~-----~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~- 407 (646)
+|.... ..+.....+...+ .... ...+.... .+.....................+..+..+...
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~~ 239 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISK-ELLGDILNWKPTASGIIVNASFIFLNSNPLLDFE 239 (496)
T ss_pred cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HhCCCcccccccHHHhhhcCeEEEEccCcccCCC
Confidence 433211 0111111111111 1010 01122222 222221111100000011111222222222222
Q ss_pred CCCCCCcEEEeCceeccCCCCCC-CchhHHHhHhc-CCCcEEEEcCCCCC--CChHHHHHHHHHHHHhc-CCeEEEEecC
Q 006412 408 PSDWGSLVAVVGYCLLNLGSKYQ-PQENFVQWIQR-GPEPIYIGFGSMPL--EDPKKTTEIILEALRDT-GQRGIIDRGW 482 (646)
Q Consensus 408 p~d~~p~v~~vG~~~~~~~~~~~-~~~~l~~wL~~-~~pvVyVsfGS~~~--~~p~~l~~~i~~Al~~~-g~r~Iv~~G~ 482 (646)
+..+.+++..+|++......... .+.++.++++. ..++|||||||++. .-+++..+.++.+++.. ++.|||....
T Consensus 240 ~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~ 319 (496)
T KOG1192|consen 240 PRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRP 319 (496)
T ss_pred CCCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecC
Confidence 44457889999998765322222 24455555555 35799999999974 45566677789999999 8888987543
Q ss_pred CCC----CCCCC-CCCcEEEeccCCccc--c-cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCC
Q 006412 483 GDL----GKITE-VPDNIFLLEDCPHDW--L-FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLG 554 (646)
Q Consensus 483 ~~~----~~l~~-~p~nV~i~~~vPq~~--L-l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G 554 (646)
... ..+.+ .++||...+|+||.+ + |+++++||||||+|||+|++++|||+|++|+|+||+.||+++++.|.|
T Consensus 320 ~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~ 399 (496)
T KOG1192|consen 320 DDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGG 399 (496)
T ss_pred CcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCE
Confidence 211 12222 256899999999999 6 888999999999999999999999999999999999999999999888
Q ss_pred CCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCHHHHH
Q 006412 555 PAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENE--DGVAAAVDAFHRHLPDEIPMPSSLPEKDDGPDPLQWF 631 (646)
Q Consensus 555 ~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~--~G~~~Av~~ie~~L~~~~~~~~~~~~~~~~~~~~~~~ 631 (646)
. .....+++.+++.+++..++ +++|+++++++++.+++. .+ +.++.++|-....+.. ++++.. ..++|++++
T Consensus 400 ~-v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~~--~~l~~~-~~~~~~~~~ 474 (496)
T KOG1192|consen 400 G-VLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEFVARHGGA--KHLKEA-AHLSFIEYG 474 (496)
T ss_pred E-EEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCC--cccCcc-ccCChhhhh
Confidence 6 46666676666999999999 999999999999999876 46 8888888877666654 566676 999999999
Q ss_pred HHHHHHH
Q 006412 632 FIQIGNW 638 (646)
Q Consensus 632 ~ldv~~~ 638 (646)
.+|++.+
T Consensus 475 ~~d~~~~ 481 (496)
T KOG1192|consen 475 SLDVIAF 481 (496)
T ss_pred hhHHHHH
Confidence 9999843
No 27
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.5e-35 Score=319.43 Aligned_cols=389 Identities=12% Similarity=0.167 Sum_probs=232.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCch-hh-----hhh---C-CceEEEcCCChHHHHHHHhhcC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEF-GHRVRLATHANFR-TF-----VRS---A-GVDFFPLGGDPRVLAGYMARNK 258 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~r-GH~Vt~~t~~~~~-~~-----v~~---~-Gl~f~~i~~~p~~l~~~~~~~~ 258 (646)
+.||+++|++++||++|++.||+.|+.+ |..|||+++.... .. +.. . ++.|..++.. . ..
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-~--------~~ 73 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSV-D--------VD 73 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCC-c--------cc
Confidence 4599999999999999999999999977 9999999655322 11 221 1 5788777631 1 01
Q ss_pred CCCCC---CcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCE-EEEEccCCCCC-
Q 006412 259 GLIPS---GPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPI-HIFFTMPWTPT- 333 (646)
Q Consensus 259 ~~~~~---~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~-v~~~t~p~~~~- 333 (646)
++.+. ....+....+.+..-++.+..... -+|+|||+|.+..|+..+|+++|||. ++++++..+..
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~ 144 (470)
T PLN03015 74 NLVEPDATIFTKMVVKMRAMKPAVRDAVKSMK---------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLA 144 (470)
T ss_pred cCCCCCccHHHHHHHHHHhchHHHHHHHHhcC---------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHH
Confidence 11010 000111111122222222222110 15789999999999999999999995 66655542211
Q ss_pred --CCC--------------CCCCCCCCcc--c-chhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCc
Q 006412 334 --YEF--------------PHPLARVPQS--A-GYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHL 394 (646)
Q Consensus 334 --~~~--------------P~pl~~ip~~--~-~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~i 394 (646)
+.+ +.++ .+|.. . ...+...+.+.. .......++.+++ ......+ ...+...+
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~-~vPg~p~l~~~dlp~~~~~~~-~~~~~~~~~~~~~----~~~a~gv--lvNTf~eL 216 (470)
T PLN03015 145 VMVYLPVLDTVVEGEYVDIKEPL-KIPGCKPVGPKELMETMLDRS-DQQYKECVRSGLE----VPMSDGV--LVNTWEEL 216 (470)
T ss_pred HHHhhhhhhcccccccCCCCCee-eCCCCCCCChHHCCHhhcCCC-cHHHHHHHHHHHh----cccCCEE--EEechHHH
Confidence 000 1110 12211 0 000000000000 0001112222221 1111100 00111111
Q ss_pred ccccc--cCCCCCCCCCCCCCcEEEeCceeccCCCCCCCchhHHHhHhcCC--CcEEEEcCCCCCCChHHHHHHHHHHHH
Q 006412 395 PTAYM--WSPHLVPKPSDWGSLVAVVGYCLLNLGSKYQPQENFVQWIQRGP--EPIYIGFGSMPLEDPKKTTEIILEALR 470 (646)
Q Consensus 395 p~~~~--~sp~l~p~p~d~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~--pvVyVsfGS~~~~~p~~l~~~i~~Al~ 470 (646)
...++ +...+.. ..-.++.+..+||+...... ...+.++.+||++++ ++|||+|||......+++.+ ++.+|+
T Consensus 217 E~~~~~~l~~~~~~-~~~~~~~v~~VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~e-la~gl~ 293 (470)
T PLN03015 217 QGNTLAALREDMEL-NRVMKVPVYPIGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVE-LAWGLE 293 (470)
T ss_pred hHHHHHHHHhhccc-ccccCCceEEecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHH-HHHHHH
Confidence 11111 0000000 00001347788888632111 122357999999874 69999999998877777654 699999
Q ss_pred hcCCeEEEEecCCC---------CCCC-CCCCCc---------EEEeccCCcccc--cccccEEEEcCchhHHHHHHHhC
Q 006412 471 DTGQRGIIDRGWGD---------LGKI-TEVPDN---------IFLLEDCPHDWL--FPQCSAVVHHGGAGTTATGLKAG 529 (646)
Q Consensus 471 ~~g~r~Iv~~G~~~---------~~~l-~~~p~n---------V~i~~~vPq~~L--l~~a~~vI~HGG~gTt~EaL~~G 529 (646)
.++++|||...... .+.. ..+|+| +.+.+|+||.++ |+++++|||||||||++|++++|
T Consensus 294 ~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~G 373 (470)
T PLN03015 294 LSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKG 373 (470)
T ss_pred hCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcC
Confidence 99999999864210 0111 135555 567799999999 67799999999999999999999
Q ss_pred CCeeecCCCCChHHHHHHH-HHcCCCCCCcC----CCCCCHHHHHHHHHHhhC------HHHHHHHHHHHHHhhcC---C
Q 006412 530 CPTTVVPFFGDQFFWGDRV-QQKGLGPAPIP----ISQLTVENLSNAVRFMLQ------PEVKSRAMELAKLIENE---D 595 (646)
Q Consensus 530 vP~vivP~~~DQ~~nA~~v-e~~G~G~~~i~----~~~lt~e~L~~aI~~lLd------p~~r~~A~~la~~l~~~---~ 595 (646)
||||++|+++||+.||+++ +.+|+|+ .+. ...++.++++++|+++|+ .++|++|++++++.++. +
T Consensus 374 vP~v~~P~~~DQ~~na~~~~~~~gvg~-~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eG 452 (470)
T PLN03015 374 VPIVAWPLYAEQWMNATLLTEEIGVAV-RTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHG 452 (470)
T ss_pred CCEEecccccchHHHHHHHHHHhCeeE-EecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998 7899998 453 235899999999999993 36899999998877663 4
Q ss_pred c-HHHHHHHHHHhc
Q 006412 596 G-VAAAVDAFHRHL 608 (646)
Q Consensus 596 G-~~~Av~~ie~~L 608 (646)
| ..+..+.|.+.+
T Consensus 453 GSS~~nl~~~~~~~ 466 (470)
T PLN03015 453 GSSYNSLFEWAKRC 466 (470)
T ss_pred CcHHHHHHHHHHhc
Confidence 4 455555555443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=4.6e-27 Score=252.47 Aligned_cols=336 Identities=15% Similarity=0.135 Sum_probs=212.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchH
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEI 268 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i 268 (646)
.+|+|...||.||++|.++||++|+++||+|.|++...- .+.+.+.|++|+.++... + .. ...+
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~------------l-~~-~~~~ 67 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGK------------L-RR-YFDL 67 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccC------------c-CC-CchH
Confidence 368888889999999999999999999999999986543 456677899988875321 0 00 0001
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECC--CccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCcc
Q 006412 269 SIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANP--PAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQS 346 (646)
Q Consensus 269 ~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~--~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~~ 346 (646)
. .......++...+.+. ...+.++||+||..- .++....+|..+|+|+++.-... ++.
T Consensus 68 ~-~~~~~~~~~~~~~~~~-----~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------~~g- 127 (352)
T PRK12446 68 K-NIKDPFLVMKGVMDAY-----VRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------TPG- 127 (352)
T ss_pred H-HHHHHHHHHHHHHHHH-----HHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------Ccc-
Confidence 1 1122222233332222 124568999999864 33446799999999997743221 110
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceeccCC
Q 006412 347 AGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLG 426 (646)
Q Consensus 347 ~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~ 426 (646)
..|. +...|-. .+-..|.-....++ ...+.++|+.++..-
T Consensus 128 ~~nr----------------~~~~~a~-------------------~v~~~f~~~~~~~~-----~~k~~~tG~Pvr~~~ 167 (352)
T PRK12446 128 LANK----------------IALRFAS-------------------KIFVTFEEAAKHLP-----KEKVIYTGSPVREEV 167 (352)
T ss_pred HHHH----------------HHHHhhC-------------------EEEEEccchhhhCC-----CCCeEEECCcCCccc
Confidence 0011 1111111 00011100001122 246789998765421
Q ss_pred CCCCCchhHHHh--HhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccC-C-
Q 006412 427 SKYQPQENFVQW--IQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDC-P- 502 (646)
Q Consensus 427 ~~~~~~~~l~~w--L~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~v-P- 502 (646)
... ..+..... ++.++++|+|..||++.....+++..++..+.. +.++++.+|..+.+......+++.+.+|+ +
T Consensus 168 ~~~-~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~ 245 (352)
T PRK12446 168 LKG-NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGE 245 (352)
T ss_pred ccc-cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHhhcCCcEEecchhhh
Confidence 111 11121111 245578999999999765544444433433322 47888888865432211111355666776 3
Q ss_pred cccccccccEEEEcCchhHHHHHHHhCCCeeecCCC-----CChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-
Q 006412 503 HDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFF-----GDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML- 576 (646)
Q Consensus 503 q~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~-----~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL- 576 (646)
..+++..||++|||||++|++|++++|+|+|++|+. +||..||+.+++.|+|+ .+...+++++.|.+++..++
T Consensus 246 m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~~l~~ll~ 324 (352)
T PRK12446 246 LPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIKHVEELSH 324 (352)
T ss_pred HHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHHHHHHHHc
Confidence 445699999999999999999999999999999985 58999999999999997 67788999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 006412 577 QPEVKSRAMELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 577 dp~~r~~A~~la~~l~~~~G~~~Av~~ie~ 606 (646)
|++.++ +.++.+...++++..++.+++
T Consensus 325 ~~~~~~---~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 325 NNEKYK---TALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred CHHHHH---HHHHHcCCCCHHHHHHHHHHh
Confidence 764432 233445566888887777754
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=3.8e-24 Score=228.34 Aligned_cols=338 Identities=22% Similarity=0.228 Sum_probs=220.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCC-EEEEEeCCC-ch-hhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcch
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGH-RVRLATHAN-FR-TFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH-~Vt~~t~~~-~~-~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~ 267 (646)
|+|++...|+.||++|.++|+++|+++|+ +|.+..+.. .. ..+...+++|+.++.........
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~-------------- 66 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGS-------------- 66 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCc--------------
Confidence 57899999999999999999999999999 577774443 32 33455688888776431100000
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEEC--CCccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCc
Q 006412 268 ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIAN--PPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQ 345 (646)
Q Consensus 268 i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad--~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~ 345 (646)
+. ..+....++.....+ ...++.++||+||.. ..+.....+|..+|||+++.-+. ..+.
T Consensus 67 ~~-~~~~~~~~~~~~~~a-----~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn-------------~~~G 127 (357)
T COG0707 67 LK-LLKAPFKLLKGVLQA-----RKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN-------------AVPG 127 (357)
T ss_pred HH-HHHHHHHHHHHHHHH-----HHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecC-------------CCcc
Confidence 00 001111111111111 012345799999984 55666788999999999884332 1111
Q ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceeccC
Q 006412 346 SAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNL 425 (646)
Q Consensus 346 ~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~ 425 (646)
.. |. +...+.. .+...|.-...+.+ +.++.++|...++.
T Consensus 128 ~a-------------nk----~~~~~a~-------------------~V~~~f~~~~~~~~-----~~~~~~tG~Pvr~~ 166 (357)
T COG0707 128 LA-------------NK----ILSKFAK-------------------KVASAFPKLEAGVK-----PENVVVTGIPVRPE 166 (357)
T ss_pred hh-------------HH----HhHHhhc-------------------eeeeccccccccCC-----CCceEEecCcccHH
Confidence 10 11 1111111 11111100011111 24678888765431
Q ss_pred CCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhc--CCeEEEEecCCCCCCC----CCCCCcEEEec
Q 006412 426 GSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDT--GQRGIIDRGWGDLGKI----TEVPDNIFLLE 499 (646)
Q Consensus 426 ~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~--g~r~Iv~~G~~~~~~l----~~~p~nV~i~~ 499 (646)
-.. .+..........++++|+|..||++... +.+.+.+++... +..+++.+|....+.. ..... +.+.+
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~ilV~GGS~Ga~~---ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~ 241 (357)
T COG0707 167 FEE-LPAAEVRKDGRLDKKTILVTGGSQGAKA---LNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGV-VRVLP 241 (357)
T ss_pred hhc-cchhhhhhhccCCCcEEEEECCcchhHH---HHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCc-EEEee
Confidence 111 1122221111226789999999996544 444444444443 4788888887643322 11112 77888
Q ss_pred cCCcc-cccccccEEEEcCchhHHHHHHHhCCCeeecCCC----CChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH
Q 006412 500 DCPHD-WLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFF----GDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRF 574 (646)
Q Consensus 500 ~vPq~-~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~----~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~ 574 (646)
|.... .+++.+|++||++|++|+.|++++|+|+|++|+. +||..||..++++|+|. .+...++|+++|.+.|.+
T Consensus 242 f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~-~i~~~~lt~~~l~~~i~~ 320 (357)
T COG0707 242 FIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAAL-VIRQSELTPEKLAELILR 320 (357)
T ss_pred HHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEE-EeccccCCHHHHHHHHHH
Confidence 88654 4499999999999999999999999999999975 48999999999999998 799999999999999999
Q ss_pred hh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 575 ML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 575 lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
++ +++-.+++++.++.+...+..+..++.+++..
T Consensus 321 l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 321 LLSNPEKLKAMAENAKKLGKPDAAERIADLLLALA 355 (357)
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 99 88888999999999999999999998887753
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=1.1e-23 Score=222.80 Aligned_cols=308 Identities=20% Similarity=0.240 Sum_probs=190.2
Q ss_pred ceEEEEecC-CCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHH
Q 006412 191 LNIAILVVG-TRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEIS 269 (646)
Q Consensus 191 mrIvi~~~g-s~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~ 269 (646)
|||+|.+.+ +.||+.++++||++| +||+|+|++.....+++... +....+++-... ..+..+ .. ...+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~-~~-~~~~~ 70 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-FPVREIPGLGPI-----QENGRL-DR-WKTVR 70 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-cCEEEccCceEe-----ccCCcc-ch-HHHHH
Confidence 899999988 889999999999999 59999999988777777655 566555321000 000000 00 00000
Q ss_pred HH---HHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCcc
Q 006412 270 IQ---RKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQS 346 (646)
Q Consensus 270 ~~---~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~~ 346 (646)
.. ...+...++... ..++.++||+||+|...+ +..+|+..|||++.+....+..... ..++..
T Consensus 71 ~~~~~~~~~~~~~~~~~--------~~l~~~~pDlVIsD~~~~-~~~aa~~~giP~i~i~~~~~~~~~~-----~~~~~~ 136 (318)
T PF13528_consen 71 NNIRWLARLARRIRREI--------RWLREFRPDLVISDFYPL-AALAARRAGIPVIVISNQYWFLHPN-----FWLPWD 136 (318)
T ss_pred HHHHhhHHHHHHHHHHH--------HHHHhcCCCEEEEcChHH-HHHHHHhcCCCEEEEEehHHccccc-----CCcchh
Confidence 00 001111111111 122457899999995444 4688999999999988876543211 111100
Q ss_pred cchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceeccCC
Q 006412 347 AGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNLG 426 (646)
Q Consensus 347 ~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~~ 426 (646)
......++++.. ..-..+... .+...+ . .|..-...+.++|+......
T Consensus 137 ---------------~~~~~~~~~~~~-~~~~~~~~~---------~l~~~~------~-~~~~~~~~~~~~~p~~~~~~ 184 (318)
T PF13528_consen 137 ---------------QDFGRLIERYID-RYHFPPADR---------RLALSF------Y-PPLPPFFRVPFVGPIIRPEI 184 (318)
T ss_pred ---------------hhHHHHHHHhhh-hccCCcccc---------eecCCc------c-ccccccccccccCchhcccc
Confidence 001112233322 110111000 011111 0 01111233556776653211
Q ss_pred CCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcC-CeEEEEecCCCCCCCCCCCCcEEEeccC--Cc
Q 006412 427 SKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTG-QRGIIDRGWGDLGKITEVPDNIFLLEDC--PH 503 (646)
Q Consensus 427 ~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g-~r~Iv~~G~~~~~~l~~~p~nV~i~~~v--Pq 503 (646)
. . .....++.|+|++|+... . .+++++++.+ .++++. |... ....++|+.+..+. ..
T Consensus 185 ~--~-------~~~~~~~~iLv~~gg~~~---~----~~~~~l~~~~~~~~~v~-g~~~---~~~~~~ni~~~~~~~~~~ 244 (318)
T PF13528_consen 185 R--E-------LPPEDEPKILVYFGGGGP---G----DLIEALKALPDYQFIVF-GPNA---ADPRPGNIHVRPFSTPDF 244 (318)
T ss_pred c--c-------cCCCCCCEEEEEeCCCcH---H----HHHHHHHhCCCCeEEEE-cCCc---ccccCCCEEEeecChHHH
Confidence 1 1 111245689999998732 2 3467777776 666666 4432 12237899999876 34
Q ss_pred ccccccccEEEEcCchhHHHHHHHhCCCeeecCC--CCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHh
Q 006412 504 DWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPF--FGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFM 575 (646)
Q Consensus 504 ~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~--~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~l 575 (646)
.++++.||++|+|||+||++|++++|+|++++|. +.||..||+.+++.|+|. .++..+++++.|+++|+++
T Consensus 245 ~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~-~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 245 AELMAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI-VLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE-EcccccCCHHHHHHHHhcC
Confidence 5569999999999999999999999999999999 789999999999999998 6888999999999999764
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=6.2e-22 Score=210.39 Aligned_cols=305 Identities=17% Similarity=0.235 Sum_probs=175.0
Q ss_pred eEEEEecCCC-CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCce-EEEcCCChHHHHHHHhhcCCCCCCCcchHH
Q 006412 192 NIAILVVGTR-GDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVD-FFPLGGDPRVLAGYMARNKGLIPSGPGEIS 269 (646)
Q Consensus 192 rIvi~~~gs~-GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~-f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~ 269 (646)
||++.+.|+. ||+.|.++|+++|++ ||+|++++......+++..|+. |..+++... ....+... ..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~-----~~ 68 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPGIKL------KGEDGKVN-----IV 68 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCCceE------eecCCcCc-----HH
Confidence 6889888866 999999999999999 9999999988888888888876 433332110 00001000 00
Q ss_pred HHHHHHHHH-HHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCcccc
Q 006412 270 IQRKQIKAI-IESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQSAG 348 (646)
Q Consensus 270 ~~~~~~~~l-l~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~~~~ 348 (646)
........+ ...+.. ....++.++||+||+| ..+.+..+|+.+|||++.+..+... .+|...
T Consensus 69 ~~l~~~~~~~~~~~~~-----~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~---~~~~~~-------- 131 (321)
T TIGR00661 69 KTLRNKEYSPKKAIRR-----EINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT---RYPLKT-------- 131 (321)
T ss_pred HHHHhhccccHHHHHH-----HHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---cCCccc--------
Confidence 000000000 001100 1123345789999999 5555678999999999977653211 111111
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHH--HhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEE-EeCceeccC
Q 006412 349 YWLSYIIVDLLIWWGIRSYINDFRK--RKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVA-VVGYCLLNL 425 (646)
Q Consensus 349 ~~ls~~~~~~~~~~~~~~~in~~r~--~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~-~vG~~~~~~ 425 (646)
.+ ..|. ...++..+-. +.++.+... ... ...| +.+. ..++..
T Consensus 132 ~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~----~~~p------~~~~~~~~~~~--- 176 (321)
T TIGR00661 132 DL--------IVYP-TMAALRIFNERCERFIVPDYP-------------FPY----TICP------KIIKNMEGPLI--- 176 (321)
T ss_pred ch--------hHHH-HHHHHHHhccccceEeeecCC-------------CCC----CCCc------cccccCCCccc---
Confidence 00 1110 0111112211 011111100 000 0001 1000 001110
Q ss_pred CCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCC-eEEEEecCCCCCCCCCCCCcEEEeccCC--
Q 006412 426 GSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQ-RGIIDRGWGDLGKITEVPDNIFLLEDCP-- 502 (646)
Q Consensus 426 ~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~-r~Iv~~G~~~~~~l~~~p~nV~i~~~vP-- 502 (646)
..+..++.....+.|+|.+||.. . +.+++++++.+. .+|+. +... .....++|+.+.+|.|
T Consensus 177 ------~~~~~~~~~~~~~~iLv~~g~~~---~----~~l~~~l~~~~~~~~i~~-~~~~--~~~~~~~~v~~~~~~~~~ 240 (321)
T TIGR00661 177 ------RYDVDDVDNYGEDYILVYIGFEY---R----YKILELLGKIANVKFVCY-SYEV--AKNSYNENVEIRRITTDN 240 (321)
T ss_pred ------chhhhccccCCCCcEEEECCcCC---H----HHHHHHHHhCCCeEEEEe-CCCC--CccccCCCEEEEECChHH
Confidence 01122233334567888888852 2 234677777664 44433 2221 1124578999999998
Q ss_pred cccccccccEEEEcCchhHHHHHHHhCCCeeecCCCC--ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHH
Q 006412 503 HDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFG--DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPE 579 (646)
Q Consensus 503 q~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~--DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~ 579 (646)
..++++.||+||||||++|++|++++|+|++++|..+ ||..||+.+++.|+|+ .++..++ ++.+++..++ ++.
T Consensus 241 ~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~-~l~~~~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 241 FKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI-ALEYKEL---RLLEAILDIRNMKR 316 (321)
T ss_pred HHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE-EcChhhH---HHHHHHHhcccccc
Confidence 3344899999999999999999999999999999965 8999999999999997 5665555 5555665555 444
Q ss_pred H
Q 006412 580 V 580 (646)
Q Consensus 580 ~ 580 (646)
|
T Consensus 317 ~ 317 (321)
T TIGR00661 317 Y 317 (321)
T ss_pred c
Confidence 3
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=9.7e-20 Score=195.89 Aligned_cols=339 Identities=21% Similarity=0.199 Sum_probs=210.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCC-cc
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSG-PG 266 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~-~~ 266 (646)
+|||+|.+.|..||+..++.|+++|+++||+|++++.... ...+++.|++++.++... ..... ..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~ 68 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGG------------LRRKGSLA 68 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccC------------cCCCChHH
Confidence 4899999999999999999999999999999999987652 334445687777664210 00000 00
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECC--CccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCC
Q 006412 267 EISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANP--PAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVP 344 (646)
Q Consensus 267 ~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~--~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip 344 (646)
.+.... .+...+..+++ ..+..+||+|++.. ..+.+..++...++|++.... .+. +
T Consensus 69 ~l~~~~-~~~~~~~~~~~--------~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~------------~ 126 (357)
T PRK00726 69 NLKAPF-KLLKGVLQARK--------ILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQ-NAV------------P 126 (357)
T ss_pred HHHHHH-HHHHHHHHHHH--------HHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcC-CCC------------c
Confidence 000000 11111111111 12345899999884 244455678888999975311 100 0
Q ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceecc
Q 006412 345 QSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLN 424 (646)
Q Consensus 345 ~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~ 424 (646)
.+. .. ++...-. .+ +. ..+..+ +. .+ +.++.++|+....
T Consensus 127 ----~~~-----~r--------~~~~~~d-~i-------i~-------~~~~~~-~~---~~-----~~~i~vi~n~v~~ 165 (357)
T PRK00726 127 ----GLA-----NK--------LLARFAK-KV-------AT-------AFPGAF-PE---FF-----KPKAVVTGNPVRE 165 (357)
T ss_pred ----cHH-----HH--------HHHHHhc-hh-------eE-------Cchhhh-hc---cC-----CCCEEEECCCCCh
Confidence 000 00 0000000 00 00 000000 00 11 3567777765432
Q ss_pred CCCCCCCchhHHHh-HhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCC--eEEEEecCCCCCCCC---CCCCcEEEe
Q 006412 425 LGSKYQPQENFVQW-IQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQ--RGIIDRGWGDLGKIT---EVPDNIFLL 498 (646)
Q Consensus 425 ~~~~~~~~~~l~~w-L~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~--r~Iv~~G~~~~~~l~---~~p~nV~i~ 498 (646)
. .+..+..-..+ +..++++|++..|+.. .+.+...+.+|+++... .+++..|.+..+.+. ...-+|.+.
T Consensus 166 ~--~~~~~~~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~ 240 (357)
T PRK00726 166 E--ILALAAPPARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVV 240 (357)
T ss_pred H--hhcccchhhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEe
Confidence 1 11111110111 1124456776666642 23344444466665433 445566665432221 122248888
Q ss_pred ccC-CcccccccccEEEEcCchhHHHHHHHhCCCeeecCC----CCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH
Q 006412 499 EDC-PHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPF----FGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVR 573 (646)
Q Consensus 499 ~~v-Pq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~----~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~ 573 (646)
+|+ +..++++.+|++|+|+|.+|++|++++|+|+|++|. .++|..|+..+.+.|+|. .++.++++++.|+++|.
T Consensus 241 g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~ 319 (357)
T PRK00726 241 PFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAAL-LIPQSDLTPEKLAEKLL 319 (357)
T ss_pred ehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHH
Confidence 998 455779999999999999999999999999999997 478999999999999998 67777889999999999
Q ss_pred Hhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhcC
Q 006412 574 FML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 574 ~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~L~ 609 (646)
+++ |++.++.+.+.+..+..+++.+++++.+++++.
T Consensus 320 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 320 ELLSDPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 999 899999999999999888999999999988764
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.80 E-value=1.8e-17 Score=177.28 Aligned_cols=328 Identities=21% Similarity=0.225 Sum_probs=194.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEEcCCCh---HHHHHHHhhcCCCCCCCcc
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFPLGGDP---RVLAGYMARNKGLIPSGPG 266 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~i~~~p---~~l~~~~~~~~~~~~~~~~ 266 (646)
||+|...++.||+...+.|++.|.++||+|+++|.... .......|++++.++... ......+... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 72 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAP--------F 72 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHH--------H
Confidence 68999999999999999999999999999999976532 223333567666554210 0000000000 0
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECC--CccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCC
Q 006412 267 EISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANP--PAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVP 344 (646)
Q Consensus 267 ~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~--~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip 344 (646)
.+......+..++ +.++||+|+++. .++.+..+|...|+|++...... + +
T Consensus 73 ~~~~~~~~~~~~i---------------~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~------~-------~ 124 (350)
T cd03785 73 KLLKGVLQARKIL---------------KKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA------V-------P 124 (350)
T ss_pred HHHHHHHHHHHHH---------------HhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC------C-------c
Confidence 0000011111111 235899999864 34445678899999997532110 0 0
Q ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceecc
Q 006412 345 QSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLN 424 (646)
Q Consensus 345 ~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~ 424 (646)
. . .+++.... .+.+. .+.... ...++ +.++.++|.....
T Consensus 125 ~----~-----------------~~~~~~~~-----~~~vi--------~~s~~~--~~~~~-----~~~~~~i~n~v~~ 163 (350)
T cd03785 125 G----L-----------------ANRLLARF-----ADRVA--------LSFPET--AKYFP-----KDKAVVTGNPVRE 163 (350)
T ss_pred c----H-----------------HHHHHHHh-----hCEEE--------Ecchhh--hhcCC-----CCcEEEECCCCch
Confidence 0 0 01110000 00000 000000 00011 3456666654321
Q ss_pred CCCCCCCchhHHHh-HhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCCCCCC----CCCCCcEE
Q 006412 425 LGSKYQPQENFVQW-IQRGPEPIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGDLGKI----TEVPDNIF 496 (646)
Q Consensus 425 ~~~~~~~~~~l~~w-L~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~~~~l----~~~p~nV~ 496 (646)
..+........| ++.++++|++..|+.. ...+.+.++++++. .+..+++..|.+..+.+ .+..+||.
T Consensus 164 --~~~~~~~~~~~~~~~~~~~~i~~~~g~~~---~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~ 238 (350)
T cd03785 164 --EILALDRERARLGLRPGKPTLLVFGGSQG---ARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYE 238 (350)
T ss_pred --HHhhhhhhHHhcCCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeE
Confidence 111111111122 1233445666666653 22333444444443 34455556666533322 22247899
Q ss_pred EeccC-CcccccccccEEEEcCchhHHHHHHHhCCCeeecCC----CCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Q 006412 497 LLEDC-PHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPF----FGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNA 571 (646)
Q Consensus 497 i~~~v-Pq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~----~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~a 571 (646)
+.+|. ...+++..||++|+++|.+|+.||+++|+|+|++|. .++|..|+..+.+.|.|. .++..+.+.++|.++
T Consensus 239 ~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~ 317 (350)
T cd03785 239 VFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAV-LIPQEELTPERLAAA 317 (350)
T ss_pred EeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEE-EEecCCCCHHHHHHH
Confidence 99998 444569999999999999999999999999999985 467999999999999997 566666789999999
Q ss_pred HHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHH
Q 006412 572 VRFML-QPEVKSRAMELAKLIENEDGVAAAVD 602 (646)
Q Consensus 572 I~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~ 602 (646)
|+.++ +++.++.+.+-+......++.++.++
T Consensus 318 i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 318 LLELLSDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 99999 88888888888877777777777765
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=4.7e-17 Score=173.87 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=109.1
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHH---hcCCeEEEEecCCCCCCCC----CCCCcEEEeccC--CcccccccccEE
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALR---DTGQRGIIDRGWGDLGKIT----EVPDNIFLLEDC--PHDWLFPQCSAV 513 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~---~~g~r~Iv~~G~~~~~~l~----~~p~nV~i~~~v--Pq~~Ll~~a~~v 513 (646)
+++|.+..|+.. .+.+.+.+.++++ ..+.++++..|.+..+.+. +..- ..++.+. ....+++.+|++
T Consensus 179 ~~~i~~~gg~~~---~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l-~~~v~~~~~~~~~~l~~ad~~ 254 (348)
T TIGR01133 179 KPTILVLGGSQG---AKILNELVPKALAKLAEKGIQIVHQTGKNDLEKVKNVYQELGI-EAIVTFIDENMAAAYAAADLV 254 (348)
T ss_pred CeEEEEECCchh---HHHHHHHHHHHHHHHhhcCcEEEEECCcchHHHHHHHHhhCCc-eEEecCcccCHHHHHHhCCEE
Confidence 344544445653 2333333344444 3355666666654332221 1110 1223333 334458999999
Q ss_pred EEcCchhHHHHHHHhCCCeeecCCC---CChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHH
Q 006412 514 VHHGGAGTTATGLKAGCPTTVVPFF---GDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAK 589 (646)
Q Consensus 514 I~HGG~gTt~EaL~~GvP~vivP~~---~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~ 589 (646)
|+++|.+|++|++++|+|+|++|.. ++|..|+..+...|.|. .++..+.++++|++++++++ |++.++++.+-++
T Consensus 255 v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 255 ISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred EECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 9999988999999999999999863 57888999999999997 67777788999999999999 8999988888888
Q ss_pred HhhcCCcHHHHHHH
Q 006412 590 LIENEDGVAAAVDA 603 (646)
Q Consensus 590 ~l~~~~G~~~Av~~ 603 (646)
.+..++..+++++.
T Consensus 334 ~~~~~~~~~~i~~~ 347 (348)
T TIGR01133 334 KLAKPDAAKRIAEL 347 (348)
T ss_pred hcCCccHHHHHHhh
Confidence 87777877777764
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.69 E-value=5.1e-16 Score=169.07 Aligned_cols=334 Identities=15% Similarity=0.127 Sum_probs=188.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCce----EEEcCCChHHHHHHHhhcCCCCCCCcc
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVD----FFPLGGDPRVLAGYMARNKGLIPSGPG 266 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~----f~~i~~~p~~l~~~~~~~~~~~~~~~~ 266 (646)
.||+|...|+.||+.|. +|+++|+++|++|+|++...- .+++.|++ +..+.. +++..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~~~~~~~l~v-----~G~~~----------- 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEVLYSMEELSV-----MGLRE----------- 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCccccChHHhhh-----ccHHH-----------
Confidence 57999999999999999 999999999999999965421 34555543 222221 11100
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEE-CCCccchHH--HHHHhCCCEEEEE-ccCCCCCCCCCCCCCC
Q 006412 267 EISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIA-NPPAYGHAH--VAEALGVPIHIFF-TMPWTPTYEFPHPLAR 342 (646)
Q Consensus 267 ~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIa-d~~~~~~~~--vA~~lGIP~v~~~-t~p~~~~~~~P~pl~~ 342 (646)
..+.+..++..++.. ...++.++||+||. |..++.... +|+.+|||++... +..|. +
T Consensus 67 ----~l~~~~~~~~~~~~~-----~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa----------w 127 (385)
T TIGR00215 67 ----VLGRLGRLLKIRKEV-----VQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA----------W 127 (385)
T ss_pred ----HHHHHHHHHHHHHHH-----HHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh----------c
Confidence 011111111111111 01234579999875 555544334 8899999998643 11121 0
Q ss_pred CCcccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCcee
Q 006412 343 VPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCL 422 (646)
Q Consensus 343 ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~ 422 (646)
- +.. + +.+.++-. .+-..+.+...+++ ..+-...++|...
T Consensus 128 ~-~~~-~----------------r~l~~~~d-------------------~v~~~~~~e~~~~~---~~g~~~~~vGnPv 167 (385)
T TIGR00215 128 R-KWR-A----------------KKIEKATD-------------------FLLAILPFEKAFYQ---KKNVPCRFVGHPL 167 (385)
T ss_pred C-cch-H----------------HHHHHHHh-------------------HhhccCCCcHHHHH---hcCCCEEEECCch
Confidence 0 000 0 01111111 00000000000111 1123455677655
Q ss_pred ccCCCCC-CCchhHHH-h-HhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCC-CCCCC----
Q 006412 423 LNLGSKY-QPQENFVQ-W-IQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGD-LGKIT---- 489 (646)
Q Consensus 423 ~~~~~~~-~~~~~l~~-w-L~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~-~~~l~---- 489 (646)
.+..... ....+..+ + ++.+.++|.+..||.... .+.+...++++++.. +.++++..+... ...+.
T Consensus 168 ~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~ae-i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~ 246 (385)
T TIGR00215 168 LDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSE-VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKA 246 (385)
T ss_pred hhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHH-HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHH
Confidence 4321111 11222222 2 234556788888887432 134555566665543 345555433321 11111
Q ss_pred C--CCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHhCCCeeec----CCCC---------ChHHHHHHHHHcCCC
Q 006412 490 E--VPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVV----PFFG---------DQFFWGDRVQQKGLG 554 (646)
Q Consensus 490 ~--~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~viv----P~~~---------DQ~~nA~~ve~~G~G 554 (646)
. ....+.+..+ ....++..+|+||+..|+.|+ |++++|+|+|++ |+.. .|..|+..+...++.
T Consensus 247 ~~~~~~~v~~~~~-~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~ 324 (385)
T TIGR00215 247 EYGPDLQLHLIDG-DARKAMFAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLV 324 (385)
T ss_pred HhCCCCcEEEECc-hHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccc
Confidence 1 1234544433 233468999999999999887 999999999999 7631 378899999999999
Q ss_pred CCCcCCCCCCHHHHHHHHHHhh-CH----HHH----HHHHHHHHHhhcCCcHHHHHHHHHH
Q 006412 555 PAPIPISQLTVENLSNAVRFML-QP----EVK----SRAMELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 555 ~~~i~~~~lt~e~L~~aI~~lL-dp----~~r----~~A~~la~~l~~~~G~~~Av~~ie~ 606 (646)
+ .+-..++|++.|.+++.++| |+ +.+ +...++.+.+...+..+++++.+.+
T Consensus 325 p-el~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 325 P-ELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred h-hhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 8 56678899999999999999 87 544 4444555555444556788887654
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=8.3e-15 Score=159.11 Aligned_cols=163 Identities=15% Similarity=0.094 Sum_probs=122.4
Q ss_pred CCCcEEEEcCCCCCCChHHHHHHHHHHHHhc-CCeEEEEecCCC--CCCC----CCCCCcEEEeccCCcc-cccccccEE
Q 006412 442 GPEPIYIGFGSMPLEDPKKTTEIILEALRDT-GQRGIIDRGWGD--LGKI----TEVPDNIFLLEDCPHD-WLFPQCSAV 513 (646)
Q Consensus 442 ~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-g~r~Iv~~G~~~--~~~l----~~~p~nV~i~~~vPq~-~Ll~~a~~v 513 (646)
+.++|++..|+..... . +..+++++.+. +.++++.+|... .+.+ ...++||++.+|+++. .++..+|++
T Consensus 201 ~~~~il~~~G~~~~~k--~-~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~ 277 (380)
T PRK13609 201 NKKILLIMAGAHGVLG--N-VKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCM 277 (380)
T ss_pred CCcEEEEEcCCCCCCc--C-HHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEE
Confidence 3456777778875321 2 23456666554 567777665321 1111 2234689999999764 569999999
Q ss_pred EEcCchhHHHHHHHhCCCeeec-CCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHh
Q 006412 514 VHHGGAGTTATGLKAGCPTTVV-PFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLI 591 (646)
Q Consensus 514 I~HGG~gTt~EaL~~GvP~viv-P~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l 591 (646)
|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++.|+|+ . ..+.++|.++|.+++ |++.++++.+-+..+
T Consensus 278 v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~-~----~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 278 ITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAV-V----IRDDEEVFAKTEALLQDDMKLLQMKEAMKSL 352 (380)
T ss_pred EeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEE-E----ECCHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 9999989999999999999985 67778889999999999986 2 246899999999999 888888888777777
Q ss_pred hcCCcHHHHHHHHHHhcCCCC
Q 006412 592 ENEDGVAAAVDAFHRHLPDEI 612 (646)
Q Consensus 592 ~~~~G~~~Av~~ie~~L~~~~ 612 (646)
......++.++.+.+.+....
T Consensus 353 ~~~~s~~~i~~~i~~~~~~~~ 373 (380)
T PRK13609 353 YLPEPADHIVDDILAENHVEP 373 (380)
T ss_pred CCCchHHHHHHHHHHhhhhhh
Confidence 777888999999988775543
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.63 E-value=7.9e-15 Score=159.02 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=100.6
Q ss_pred CCCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCC-CCCC----CCC-CCcEEEeccCCcccccccc
Q 006412 442 GPEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGD-LGKI----TEV-PDNIFLLEDCPHDWLFPQC 510 (646)
Q Consensus 442 ~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~-~~~l----~~~-p~nV~i~~~vPq~~Ll~~a 510 (646)
+.++|.+..||.... .+.....++++++.. +.++++..+... .+.+ ... .-++.+... .-..++..+
T Consensus 185 ~~~~il~~~gsr~~~-~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~a 262 (380)
T PRK00025 185 DARVLALLPGSRGQE-IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG-QKREAMAAA 262 (380)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhC
Confidence 345566666765321 123345555655432 356677655221 1111 111 223444321 123348999
Q ss_pred cEEEEcCchhHHHHHHHhCCCeeecCCCCChH-HH------------HHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-
Q 006412 511 SAVVHHGGAGTTATGLKAGCPTTVVPFFGDQF-FW------------GDRVQQKGLGPAPIPISQLTVENLSNAVRFML- 576 (646)
Q Consensus 511 ~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~-~n------------A~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL- 576 (646)
|++|+.+|.+++ |++++|+|+|++|-.+--+ .. +..+...+++. .+.....++++|++++.+++
T Consensus 263 Dl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 263 DAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVP-ELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred CEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcch-hhcCCCCCHHHHHHHHHHHhc
Confidence 999999999887 9999999999996432111 11 22333333343 35557889999999999999
Q ss_pred CHHHHHHHHHHH----HHhhcCCcHHHHHHHHHHhcCCC
Q 006412 577 QPEVKSRAMELA----KLIENEDGVAAAVDAFHRHLPDE 611 (646)
Q Consensus 577 dp~~r~~A~~la----~~l~~~~G~~~Av~~ie~~L~~~ 611 (646)
|++.++.+.+-+ +.+ ..++++++++.+.+.+..+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~~ 378 (380)
T PRK00025 341 DGARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQR 378 (380)
T ss_pred CHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhhc
Confidence 888776555543 544 5678899999998876543
No 38
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.63 E-value=1e-15 Score=142.06 Aligned_cols=136 Identities=35% Similarity=0.465 Sum_probs=94.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCCC-hHHHHHHHhhcCCCCCCCcchHHHH
Q 006412 193 IAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGGD-PRVLAGYMARNKGLIPSGPGEISIQ 271 (646)
Q Consensus 193 Ivi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~-p~~l~~~~~~~~~~~~~~~~~i~~~ 271 (646)
|+|++.|++||++|+++||++|++|||+|++++++.+++.+++.|++|.+++.+ ...-.....+.. ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANL-------RRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHH-------HCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCCcCcCcccchhhhh-------hhHHHH
Confidence 789999999999999999999999999999999999999999999999999887 111100011110 011111
Q ss_pred HHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCC
Q 006412 272 RKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYE 335 (646)
Q Consensus 272 ~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~ 335 (646)
...+.++.+.+.....+..........+|+++++.....+..+||++|||++....+|++++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~~~~ 137 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFATRV 137 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGSTCS
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCcCcc
Confidence 2223333333222222222233344578889999888889999999999999999999887654
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=1.2e-14 Score=151.46 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=77.4
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc--CCeEEEEecCCCC--CCC---CCCCCcEEEeccCCcc-cccccccEEEE
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT--GQRGIIDRGWGDL--GKI---TEVPDNIFLLEDCPHD-WLFPQCSAVVH 515 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~--g~r~Iv~~G~~~~--~~l---~~~p~nV~i~~~vPq~-~Ll~~a~~vI~ 515 (646)
+.|+|+||.. ++..++..+++++.+. +.++.+..|.... +.+ ....+|+.+..++++. .+|..+|++|+
T Consensus 171 ~~iLi~~GG~---d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 171 RRVLVSFGGA---DPDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIG 247 (279)
T ss_pred CeEEEEeCCc---CCcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEE
Confidence 5799999976 3344666677888764 4566667765432 111 1224689999999865 67999999999
Q ss_pred cCchhHHHHHHHhCCCeeecCCCCChHHHHHH
Q 006412 516 HGGAGTTATGLKAGCPTTVVPFFGDQFFWGDR 547 (646)
Q Consensus 516 HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ 547 (646)
+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 248 ~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 248 AAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 9999999999999999999999999975
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.61 E-value=4.3e-14 Score=145.37 Aligned_cols=357 Identities=20% Similarity=0.183 Sum_probs=211.9
Q ss_pred CCCcceEEEEecC--CCCChHHHHHHHHHHHhC--CCEEEEEeCCCc-hhhhhhCCceEEEcCCChHHHHHHHhhcCCCC
Q 006412 187 SIPRLNIAILVVG--TRGDVQPFLAMAKRLQEF--GHRVRLATHANF-RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLI 261 (646)
Q Consensus 187 ~~~~mrIvi~~~g--s~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~-~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~ 261 (646)
-+.++||+|.+.- +.||+.++..||+.|.+. |.+|++++...- ..|--..|++|+.++.-...- .|..
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~-------~G~~ 78 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGD-------NGEY 78 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecC-------CCce
Confidence 3456799999976 567999999999999998 999999987644 344445789999887531110 1111
Q ss_pred CCC--cchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchH-----HHHH--HhCCCEEEEEccCCCC
Q 006412 262 PSG--PGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHA-----HVAE--ALGVPIHIFFTMPWTP 332 (646)
Q Consensus 262 ~~~--~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~-----~vA~--~lGIP~v~~~t~p~~~ 332 (646)
... -..+....+.=.+++.+ +.+.|+||++|.|-+-++.. .++. ..+-+++...+.-
T Consensus 79 ~~~d~~~~l~e~~~~Rs~lil~-----------t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i--- 144 (400)
T COG4671 79 GLVDLDGDLEETKKLRSQLILS-----------TAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSI--- 144 (400)
T ss_pred eeeecCCCHHHHHHHHHHHHHH-----------HHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhh---
Confidence 000 00111111111222222 22458999999996666511 1111 1121222211100
Q ss_pred CCCCCCCCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHh--cCCCCCcccccccCcccCcccccccCCCCCCCCCC
Q 006412 333 TYEFPHPLARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRK--LKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSD 410 (646)
Q Consensus 333 ~~~~P~pl~~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~--lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d 410 (646)
-..|+.. ..-+-.......++++.... +|-+... +.... ++.+..
T Consensus 145 --------~D~p~~~--------~~~w~~~~~~~~I~r~yD~V~v~GdP~f~----------d~~~~-------~~~~~~ 191 (400)
T COG4671 145 --------RDIPQEL--------EADWRRAETVRLINRFYDLVLVYGDPDFY----------DPLTE-------FPFAPA 191 (400)
T ss_pred --------hhchhhh--------ccchhhhHHHHHHHHhheEEEEecCcccc----------Chhhc-------CCccHh
Confidence 0001000 00001112233344443310 1111111 11111 333445
Q ss_pred CCCcEEEeCceeccCCCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHh-cCCe--EEEEecCCCCCC
Q 006412 411 WGSLVAVVGYCLLNLGSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRD-TGQR--GIIDRGWGDLGK 487 (646)
Q Consensus 411 ~~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~-~g~r--~Iv~~G~~~~~~ 487 (646)
...++.++|++-.+.+....++.+ ...+.-|+|+-|.- .+-.++++..++|... .+.+ .++.+|..-...
T Consensus 192 i~~k~~ytG~vq~~~~~~~~p~~~-----~pE~~~Ilvs~GGG--~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~ 264 (400)
T COG4671 192 IRAKMRYTGFVQRSLPHLPLPPHE-----APEGFDILVSVGGG--ADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEA 264 (400)
T ss_pred hhhheeEeEEeeccCcCCCCCCcC-----CCccceEEEecCCC--hhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHH
Confidence 667899999983321111111110 02234688887764 2556788887777665 3433 777777642211
Q ss_pred ----C---CCCCCcEEEeccCCc-ccccccccEEEEcCchhHHHHHHHhCCCeeecCCC---CChHHHHHHHHHcCCCCC
Q 006412 488 ----I---TEVPDNIFLLEDCPH-DWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFF---GDQFFWGDRVQQKGLGPA 556 (646)
Q Consensus 488 ----l---~~~p~nV~i~~~vPq-~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~---~DQ~~nA~~ve~~G~G~~ 556 (646)
+ ....+++.+..|-.+ ..++..|+++|+-||+||++|-|++|||.++||+. -+|..-|+|++++|+.-
T Consensus 265 ~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~d- 343 (400)
T COG4671 265 QRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVD- 343 (400)
T ss_pred HHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcce-
Confidence 1 122378999998764 45699999999999999999999999999999986 48999999999999985
Q ss_pred CcCCCCCCHHHHHHHHHHhhC-HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhcCCCC
Q 006412 557 PIPISQLTVENLSNAVRFMLQ-PEVKSRAMELAKLIENEDGVAAAVDAFHRHLPDEI 612 (646)
Q Consensus 557 ~i~~~~lt~e~L~~aI~~lLd-p~~r~~A~~la~~l~~~~G~~~Av~~ie~~L~~~~ 612 (646)
.+..++++++.|+++|..+++ |+... .--+-+|.+..++.+..+|....
T Consensus 344 vL~pe~lt~~~La~al~~~l~~P~~~~-------~~L~L~G~~~~a~~l~e~L~~~~ 393 (400)
T COG4671 344 VLLPENLTPQNLADALKAALARPSPSK-------PHLDLEGLEHIARILAELLSTRS 393 (400)
T ss_pred eeCcccCChHHHHHHHHhcccCCCCCc-------cccCchhhHhHHHHHHHHhhhhc
Confidence 788899999999999999985 43211 12245788888888877776654
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=3.2e-13 Score=147.60 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=131.1
Q ss_pred cCCCcEEEEcCCCCCCChHHHHHHHHHHH-Hh-cCCeEEEEecCCC-C-CCCC---CCCCcEEEeccCCcc-cccccccE
Q 006412 441 RGPEPIYIGFGSMPLEDPKKTTEIILEAL-RD-TGQRGIIDRGWGD-L-GKIT---EVPDNIFLLEDCPHD-WLFPQCSA 512 (646)
Q Consensus 441 ~~~pvVyVsfGS~~~~~p~~l~~~i~~Al-~~-~g~r~Iv~~G~~~-~-~~l~---~~p~nV~i~~~vPq~-~Ll~~a~~ 512 (646)
.+.++|++..|++... +. ++.+++++ +. .+.++++.+|... . +.+. ...++|.+.+|+.+. .++..+|+
T Consensus 200 ~~~~~ilv~~G~lg~~--k~-~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl 276 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KG-FDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL 276 (391)
T ss_pred CCCCEEEEECCCcccc--hh-HHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhE
Confidence 3456788888988531 12 23334443 33 2467776666432 1 1121 124689999998543 45999999
Q ss_pred EEEcCchhHHHHHHHhCCCeeec-CCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHH
Q 006412 513 VVHHGGAGTTATGLKAGCPTTVV-PFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKL 590 (646)
Q Consensus 513 vI~HGG~gTt~EaL~~GvP~viv-P~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~ 590 (646)
+|+..|..|+.||+++|+|+|+. |..+.|..||..+++.|+|+ .. -+.+++.++|..++ |++.++++++-+..
T Consensus 277 ~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~-~~----~~~~~l~~~i~~ll~~~~~~~~m~~~~~~ 351 (391)
T PRK13608 277 MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGK-IA----DTPEEAIKIVASLTNGNEQLTNMISTMEQ 351 (391)
T ss_pred EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEE-Ee----CCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99998889999999999999998 77777889999999999996 22 27899999999999 88888888888888
Q ss_pred hhcCCcHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCHHHHHHH
Q 006412 591 IENEDGVAAAVDAFHRHLPDEIPMPSSLPEKDDGPDPLQWFFI 633 (646)
Q Consensus 591 l~~~~G~~~Av~~ie~~L~~~~~~~~~~~~~~~~~~~~~~~~l 633 (646)
+....+.+..++.+++++..... ++ ..-.+-+.|..|++
T Consensus 352 ~~~~~s~~~i~~~l~~l~~~~~~--~~--~~~~~~~~~~~~~~ 390 (391)
T PRK13608 352 DKIKYATQTICRDLLDLIGHSSQ--PQ--EIYGKVPLYARFFV 390 (391)
T ss_pred hcCCCCHHHHHHHHHHHhhhhhh--hh--hhhccccHHHHhhc
Confidence 87788899999999988854322 12 33456666766653
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.59 E-value=1.2e-16 Score=153.46 Aligned_cols=143 Identities=26% Similarity=0.322 Sum_probs=101.4
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHh--cCCeEEEEecCCCCCCC----CCCCCcEEEeccCC-cccccccccEEEEcC
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRD--TGQRGIIDRGWGDLGKI----TEVPDNIFLLEDCP-HDWLFPQCSAVVHHG 517 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~--~g~r~Iv~~G~~~~~~l----~~~p~nV~i~~~vP-q~~Ll~~a~~vI~HG 517 (646)
+|+|+.||.....-.+++..+.+.+.. ...++++.+|....... .....++.+.+|.+ ..+++..+|++||||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 489999998532111222222333333 24788888887633221 22236899999999 777899999999999
Q ss_pred chhHHHHHHHhCCCeeecCCCC----ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHH
Q 006412 518 GAGTTATGLKAGCPTTVVPFFG----DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELA 588 (646)
Q Consensus 518 G~gTt~EaL~~GvP~vivP~~~----DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la 588 (646)
|+||++|++++|+|+|++|... +|..||..+++.|+|. .+....++.+.|.++|..++ ++..+..+.+.+
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~~ 155 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESELNPEELAEAIEELLSDPEKLKEMAKAA 155 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC-SCCCHHHHHHCHCCCHH-SHHHCCCH
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCcccCCHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999988 9999999999999998 67788888999999999999 666544443333
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.49 E-value=6e-12 Score=137.06 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=119.0
Q ss_pred cCCCcEEEEcCCCCCCChHHHHHHHHHHHH-----hcCCeEEEEecCCC-C-CCCC--CCCCcEEEeccCCcc-cccccc
Q 006412 441 RGPEPIYIGFGSMPLEDPKKTTEIILEALR-----DTGQRGIIDRGWGD-L-GKIT--EVPDNIFLLEDCPHD-WLFPQC 510 (646)
Q Consensus 441 ~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~-----~~g~r~Iv~~G~~~-~-~~l~--~~p~nV~i~~~vPq~-~Ll~~a 510 (646)
.+.++|.+..|+........+++.+.+.+. ..+.++++.+|.+. . ..+. ....+|.+.+|+++. .++..+
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aa 283 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGAC 283 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhC
Confidence 345667776677655444444444322221 12355666666442 1 1221 123579999999743 349999
Q ss_pred cEEEEcCchhHHHHHHHhCCCeeecCCCCChH-HHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-C-HHHHHHHHHH
Q 006412 511 SAVVHHGGAGTTATGLKAGCPTTVVPFFGDQF-FWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-Q-PEVKSRAMEL 587 (646)
Q Consensus 511 ~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~-~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-d-p~~r~~A~~l 587 (646)
|++|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+.|.|. .+ -+++.|.++|.+++ + ++.++++++.
T Consensus 284 Dv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~-~~----~~~~~la~~i~~ll~~~~~~~~~m~~~ 358 (382)
T PLN02605 284 DCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGA-FS----ESPKEIARIVAEWFGDKSDELEAMSEN 358 (382)
T ss_pred CEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCcee-ec----CCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999998766665 6999899999996 22 58899999999999 7 8888888888
Q ss_pred HHHhhcCCcHHHHHHHHHHhc
Q 006412 588 AKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 588 a~~l~~~~G~~~Av~~ie~~L 608 (646)
+......++.+..++.+.+.+
T Consensus 359 ~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 359 ALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHhcCCchHHHHHHHHHHHh
Confidence 888888888888888887764
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.45 E-value=3.1e-12 Score=139.79 Aligned_cols=347 Identities=15% Similarity=0.067 Sum_probs=190.9
Q ss_pred CCCCChHHHHHHHHHHHh--CCCEEE---EEeCCCc--hhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHHH
Q 006412 199 GTRGDVQPFLAMAKRLQE--FGHRVR---LATHANF--RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISIQ 271 (646)
Q Consensus 199 gs~GHv~P~laLAk~L~~--rGH~Vt---~~t~~~~--~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~~ 271 (646)
.+.|-=.-.++||++|++ .|++|. +++..+. +..+...| ++..++.. |+.... +...
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~sg------------g~~~~~---~~~~ 68 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELPSG------------GFSYQS---LRGL 68 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCCCC------------CccCCC---HHHH
Confidence 344433456889999998 699999 9977653 23344455 45444321 111111 1111
Q ss_pred HHHHHH-HHHHHhhhcCCCccccCCCC--cccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCCCCCCCCCCCCcccc
Q 006412 272 RKQIKA-IIESLLPACTDPDIETGVPF--RSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQSAG 348 (646)
Q Consensus 272 ~~~~~~-ll~~l~~~~~~~d~~~~~~~--~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~~ip~~~~ 348 (646)
...+.. ++..++.+. ...+.+ +||+||+---.. ...+|..+|+|++++.|.--..+..-... .+.. .
T Consensus 69 ~~~~~~gl~~~~~~~~-----~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~~~~~---~~~~-~ 138 (396)
T TIGR03492 69 LRDLRAGLVGLTLGQW-----RALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWESGPR---RSPS-D 138 (396)
T ss_pred HHHHHhhHHHHHHHHH-----HHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeecCCCC---Cccc-h
Confidence 222222 443433332 133456 899998764444 67899999999998665321111000000 0000 0
Q ss_pred hhHHHHHHHHHHHHhhH--HH-HHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEeCceeccC
Q 006412 349 YWLSYIIVDLLIWWGIR--SY-INDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVVGYCLLNL 425 (646)
Q Consensus 349 ~~ls~~~~~~~~~~~~~--~~-in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~vG~~~~~~ 425 (646)
.+ ..|.+.. .+ .|++.. ... ..+-..+......+. ..+-++.++|..+.+.
T Consensus 139 ~~--------~~~~G~~~~p~e~n~l~~------~~a---------~~v~~~~~~t~~~l~---~~g~k~~~vGnPv~d~ 192 (396)
T TIGR03492 139 EY--------HRLEGSLYLPWERWLMRS------RRC---------LAVFVRDRLTARDLR---RQGVRASYLGNPMMDG 192 (396)
T ss_pred hh--------hccCCCccCHHHHHHhhc------hhh---------CEEeCCCHHHHHHHH---HCCCeEEEeCcCHHhc
Confidence 00 0000000 00 111111 000 000011111111122 1245788999876653
Q ss_pred CCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhc----CCeEEEEe-cCCCCCCC----C--CC---
Q 006412 426 GSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDT----GQRGIIDR-GWGDLGKI----T--EV--- 491 (646)
Q Consensus 426 ~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~----g~r~Iv~~-G~~~~~~l----~--~~--- 491 (646)
-.... .. -++.+.+.|.+-.||...... ..+..++++++.. +.++++.+ +....+.+ . ..
T Consensus 193 l~~~~-~~----~l~~~~~~lllLpGSR~ae~~-~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~ 266 (396)
T TIGR03492 193 LEPPE-RK----PLLTGRFRIALLPGSRPPEAY-RNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLE 266 (396)
T ss_pred Ccccc-cc----ccCCCCCEEEEECCCCHHHHH-ccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceec
Confidence 21111 11 234455688888899743221 2233556666653 56777766 33222111 1 11
Q ss_pred -----------CCcEEEeccC-CcccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHc----CCCC
Q 006412 492 -----------PDNIFLLEDC-PHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQK----GLGP 555 (646)
Q Consensus 492 -----------p~nV~i~~~v-Pq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~----G~G~ 555 (646)
.+++.+..+. ....++..||++|+.+|..| .|+.+.|+|+|++|+-..|. |+...++. |.++
T Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~ 344 (396)
T TIGR03492 267 GSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSV 344 (396)
T ss_pred CCccccchhhccCceEEEechHhHHHHHHhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEE
Confidence 1235555443 23456899999999999866 99999999999999877786 98877764 6554
Q ss_pred CCcCCCCCCHHHHHHHHHHhh-CHHHHHHHH-HHHHHhhcCCcHHHHHHHHHHhc
Q 006412 556 APIPISQLTVENLSNAVRFML-QPEVKSRAM-ELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 556 ~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~-~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.+. +.+.+.|.+++..++ |++.++++. +.+..+...++.+++++.+.+++
T Consensus 345 -~l~--~~~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~~~ 396 (396)
T TIGR03492 345 -FLA--SKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESILKQL 396 (396)
T ss_pred -ecC--CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence 333 456699999999999 888777776 56667777788899999887754
No 45
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=8.1e-11 Score=118.21 Aligned_cols=294 Identities=19% Similarity=0.192 Sum_probs=188.7
Q ss_pred ceEEEEecC----CCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh--CCceEEEcCCChHHHHHHHhhcCCCCCCC
Q 006412 191 LNIAILVVG----TRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS--AGVDFFPLGGDPRVLAGYMARNKGLIPSG 264 (646)
Q Consensus 191 mrIvi~~~g----s~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~--~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~ 264 (646)
|||+|.+-| +.|||.+++.||++|.++|..+.|++..+..+++.+ .++.+......
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~~~~------------------ 62 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEGRGN------------------ 62 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceeeecc------------------
Confidence 899999876 579999999999999999999999998775553322 11111000000
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccc---hHHHHHHhCCCEEEEEccCCCCCCCCCCCCC
Q 006412 265 PGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYG---HAHVAEALGVPIHIFFTMPWTPTYEFPHPLA 341 (646)
Q Consensus 265 ~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~---~~~vA~~lGIP~v~~~t~p~~~~~~~P~pl~ 341 (646)
..++..++|++|.|....- ...+++..|.+.+++-.....+ +
T Consensus 63 ---------------------------n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~-------~- 107 (318)
T COG3980 63 ---------------------------NLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKS-------F- 107 (318)
T ss_pred ---------------------------cccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccc-------h-
Confidence 0123358999999977665 4577888999999876543111 0
Q ss_pred CCCcccchhHHHHHHHHHHHHhhHHHHHHHHH--HhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcE-EEe
Q 006412 342 RVPQSAGYWLSYIIVDLLIWWGIRSYINDFRK--RKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLV-AVV 418 (646)
Q Consensus 342 ~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~--~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v-~~v 418 (646)
.-.+ -.+|..+. +..++. | .+. .+.
T Consensus 108 ------------~d~d--------~ivN~~~~a~~~y~~v--------------------------~------~k~~~~l 135 (318)
T COG3980 108 ------------KDND--------LIVNAILNANDYYGLV--------------------------P------NKTRYYL 135 (318)
T ss_pred ------------hhhH--------hhhhhhhcchhhcccc--------------------------C------cceEEEe
Confidence 0001 12233222 011111 1 111 234
Q ss_pred CceeccCCCC-CCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCC--CCC---CCCC
Q 006412 419 GYCLLNLGSK-YQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDL--GKI---TEVP 492 (646)
Q Consensus 419 G~~~~~~~~~-~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~--~~l---~~~p 492 (646)
||-+....+. +... .+-+.....-|+|++|.. +|..++-.++..+.+.++.+-++.|..+. ..+ .+..
T Consensus 136 Gp~y~~lr~eF~~~r---~~~~~r~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~ 209 (318)
T COG3980 136 GPGYAPLRPEFYALR---EENTERPKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKY 209 (318)
T ss_pred cCCceeccHHHHHhH---HHHhhcchheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhC
Confidence 4432221111 1100 111222234699999986 88888888889998888777666664322 111 1234
Q ss_pred CcEEEeccCC-cccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Q 006412 493 DNIFLLEDCP-HDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNA 571 (646)
Q Consensus 493 ~nV~i~~~vP-q~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~a 571 (646)
+|+.+..+.. ...|+..||+.|+-||. |++|++..|+|.+++|+...|---|...+.+|+-. ...+. ++.+.+...
T Consensus 210 ~~i~~~~~~~dma~LMke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~-~l~~~-l~~~~~~~~ 286 (318)
T COG3980 210 PNINLYIDTNDMAELMKEADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIK-QLGYH-LKDLAKDYE 286 (318)
T ss_pred CCeeeEecchhHHHHHHhcchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchh-hccCC-CchHHHHHH
Confidence 6677666554 55679999999999996 99999999999999999999999999999999986 44443 677777777
Q ss_pred HHHhh-CHHHHHHHHHHHHHhhcCCcHH
Q 006412 572 VRFML-QPEVKSRAMELAKLIENEDGVA 598 (646)
Q Consensus 572 I~~lL-dp~~r~~A~~la~~l~~~~G~~ 598 (646)
+..+. |...|.+...-.+.+-+..|..
T Consensus 287 ~~~i~~d~~~rk~l~~~~~~i~dg~g~~ 314 (318)
T COG3980 287 ILQIQKDYARRKNLSFGSKLIGDGRGFL 314 (318)
T ss_pred HHHhhhCHHHhhhhhhccceeeccccce
Confidence 77777 8888877766655554444433
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=1.9e-10 Score=121.75 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc----CCeEEEEecCCCCCCCCCCCCcEEEeccCCcccc---cccccEEEE
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT----GQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWL---FPQCSAVVH 515 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~----g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~L---l~~a~~vI~ 515 (646)
++.+++..|++.. .+-.+.++++++.. +.++++..+......+....+||.+.++++++++ +..+|++|+
T Consensus 196 ~~~~i~~~G~~~~---~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ 272 (364)
T cd03814 196 DRPVLLYVGRLAP---EKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVF 272 (364)
T ss_pred CCeEEEEEecccc---ccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEE
Confidence 3456667777632 12233445555543 3566555432222222345689999999998876 899999998
Q ss_pred cCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHH
Q 006412 516 HGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKL 590 (646)
Q Consensus 516 HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~ 590 (646)
.+. .++++||+++|+|+|+.+..+ +...++..+.|. .. ...+.++++++|.+++ |++.++.+.+-+..
T Consensus 273 ~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~-~~--~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 345 (364)
T cd03814 273 PSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGL-LV--EPGDAEAFAAALAALLADPELRRRMAARARA 345 (364)
T ss_pred CcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceE-Ec--CCCCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 765 378999999999999887554 445566667785 33 3567888999999999 88888887777777
Q ss_pred hhcCCcHHHHHHHHHHhc
Q 006412 591 IENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 591 l~~~~G~~~Av~~ie~~L 608 (646)
....-..+..++.+.+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 346 EAERRSWEAFLDNLLEAY 363 (364)
T ss_pred HHhhcCHHHHHHHHHHhh
Confidence 666667777777777654
No 47
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.17 E-value=9.6e-09 Score=111.06 Aligned_cols=137 Identities=14% Similarity=0.158 Sum_probs=93.5
Q ss_pred HHHHHHHHHhc-----CCeEEEEecCCC-CC----CCCCCCCcEEEeccCCcccc---cccccEEEEcCchhHHHHHHHh
Q 006412 462 TEIILEALRDT-----GQRGIIDRGWGD-LG----KITEVPDNIFLLEDCPHDWL---FPQCSAVVHHGGAGTTATGLKA 528 (646)
Q Consensus 462 ~~~i~~Al~~~-----g~r~Iv~~G~~~-~~----~l~~~p~nV~i~~~vPq~~L---l~~a~~vI~HGG~gTt~EaL~~ 528 (646)
.+.+++|+++. +.++++..+... .. ......++|++++.+++.++ +..+++||+-.|. .+.||+++
T Consensus 214 ~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~-~~~EA~a~ 292 (365)
T TIGR00236 214 LENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDSGG-VQEEAPSL 292 (365)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECChh-HHHHHHHc
Confidence 45566766553 456666543211 10 00123468999987776544 7899999998775 47999999
Q ss_pred CCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 529 GCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 529 GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
|+|+|+++-.++++. +...|.+. .+ ..++++|.+++.+++ |++.++++.+-...+.+.+..+++++.++++
T Consensus 293 g~PvI~~~~~~~~~e----~~~~g~~~-lv---~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 293 GKPVLVLRDTTERPE----TVEAGTNK-LV---GTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNH 364 (365)
T ss_pred CCCEEECCCCCCChH----HHhcCceE-Ee---CCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhh
Confidence 999999976666553 22356664 23 247899999999999 8888877766555555555678888887764
No 48
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.16 E-value=2.1e-08 Score=106.58 Aligned_cols=323 Identities=19% Similarity=0.231 Sum_probs=179.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC--chhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchH
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN--FRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEI 268 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~--~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i 268 (646)
|||.|-.... .|+.-|-.+.++|.++||+|.+.+-+. ..+.++..|+++..+|.....+..- +
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~K--------------l 65 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGK--------------L 65 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHH--------------H
Confidence 7787766444 499999999999999999999987653 4678889999999998653221110 0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccCCCCCC-CCCCCCCCCCccc
Q 006412 269 SIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMPWTPTY-EFPHPLARVPQSA 347 (646)
Q Consensus 269 ~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p~~~~~-~~P~pl~~ip~~~ 347 (646)
........++++- .+.++||++|+- .+..+.++|..+|+|.+.+.=.+..... ....|++..
T Consensus 66 ~~~~~R~~~l~~~------------~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pla~~---- 128 (335)
T PF04007_consen 66 LESIERQYKLLKL------------IKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPLADV---- 128 (335)
T ss_pred HHHHHHHHHHHHH------------HHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehhcCCe----
Confidence 0001111111111 123789999975 4566678999999999998765432110 000111100
Q ss_pred chhHHHHHHHHHHHHhhHHHHH-HHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEE-EeCcee-cc
Q 006412 348 GYWLSYIIVDLLIWWGIRSYIN-DFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVA-VVGYCL-LN 424 (646)
Q Consensus 348 ~~~ls~~~~~~~~~~~~~~~in-~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~-~vG~~~-~~ 424 (646)
.+. -..+. .+.. .+|.. .++. +-|..- ..
T Consensus 129 -----------i~~---P~~~~~~~~~-~~G~~---------------------------------~~i~~y~G~~E~ay 160 (335)
T PF04007_consen 129 -----------IIT---PEAIPKEFLK-RFGAK---------------------------------NQIRTYNGYKELAY 160 (335)
T ss_pred -----------eEC---CcccCHHHHH-hcCCc---------------------------------CCEEEECCeeeEEe
Confidence 000 00000 0011 22222 0122 333221 00
Q ss_pred CCCCCCCchhHHHhHh-cCCCcEEEEcCCCC---CCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEec-
Q 006412 425 LGSKYQPQENFVQWIQ-RGPEPIYIGFGSMP---LEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLE- 499 (646)
Q Consensus 425 ~~~~~~~~~~l~~wL~-~~~pvVyVsfGS~~---~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~- 499 (646)
..+ ++|+++..+-+. +..+.|++=+-+.. ......++..+++.+++.+..+++.........+.+. -++.+.+
T Consensus 161 l~~-F~Pd~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~-~~~~i~~~ 238 (335)
T PF04007_consen 161 LHP-FKPDPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEK-YGVIIPPE 238 (335)
T ss_pred ecC-CCCChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhc-cCccccCC
Confidence 111 444444444443 23456666665532 1123345666788999988765444333222111111 1243332
Q ss_pred cCCcccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 500 DCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 500 ~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
-+....|+..|++||+-|| ....||...|+|+|-+ +.++-...=+.+.+.|.- ...-+.+++.+.++..+ .
T Consensus 239 ~vd~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll-----~~~~~~~ei~~~v~~~~--~ 309 (335)
T PF04007_consen 239 PVDGLDLLYYADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLL-----YHSTDPDEIVEYVRKNL--G 309 (335)
T ss_pred CCCHHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCe-----EecCCHHHHHHHHHHhh--h
Confidence 2333367999999999887 6889999999999976 334432333556666663 23566777777665544 2
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 580 VKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 580 ~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.+.+.+. ...++..+..++.|++++
T Consensus 310 ~~~~~~~----~~~~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 310 KRKKIRE----KKSEDPTDLIIEEIEEYI 334 (335)
T ss_pred cccchhh----hhccCHHHHHHHHHHHhh
Confidence 2332222 223788888888888765
No 49
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.14 E-value=8.3e-08 Score=107.40 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=97.9
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhc-CCeEEEEecCCC-CCCCCC--CCCcEEEeccCCcccc---cccccEEEEcC
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDT-GQRGIIDRGWGD-LGKITE--VPDNIFLLEDCPHDWL---FPQCSAVVHHG 517 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~-g~r~Iv~~G~~~-~~~l~~--~p~nV~i~~~vPq~~L---l~~a~~vI~HG 517 (646)
++++..|++ .+++..+.++++++.. +.++++.. .+. .+.+.. ...+|.+.++++++++ +..+|+||.-.
T Consensus 264 ~~i~~vGrl---~~~K~~~~li~a~~~~~~~~l~ivG-~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS 339 (465)
T PLN02871 264 PLIVYVGRL---GAEKNLDFLKRVMERLPGARLAFVG-DGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPS 339 (465)
T ss_pred eEEEEeCCC---chhhhHHHHHHHHHhCCCcEEEEEe-CChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECC
Confidence 455566776 4455667778888775 46666553 332 122211 1357999999998776 89999999654
Q ss_pred c----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHH---cCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHH
Q 006412 518 G----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQ---KGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAK 589 (646)
Q Consensus 518 G----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~---~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~ 589 (646)
. ..++.||+++|+|+|+....+ ....++. .+.|. .++ .-+.++++++|..++ |++.++.+.+-+.
T Consensus 340 ~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~-lv~--~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 412 (465)
T PLN02871 340 ESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGF-LYT--PGDVDDCVEKLETLLADPELRERMGAAAR 412 (465)
T ss_pred cccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceE-EeC--CCCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3 357899999999999876432 3344555 56675 333 457899999999999 8877666666555
Q ss_pred HhhcCCcHHHHHHHHH
Q 006412 590 LIENEDGVAAAVDAFH 605 (646)
Q Consensus 590 ~l~~~~G~~~Av~~ie 605 (646)
.....-..+..++.+.
T Consensus 413 ~~~~~fsw~~~a~~l~ 428 (465)
T PLN02871 413 EEVEKWDWRAATRKLR 428 (465)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 4433334444444443
No 50
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.08 E-value=4.1e-09 Score=113.32 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=86.9
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhcC---CeEEEEecCCCCCCC----CCC---CCcEEEeccCCcccc---ccc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDTG---QRGIIDRGWGDLGKI----TEV---PDNIFLLEDCPHDWL---FPQ 509 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g---~r~Iv~~G~~~~~~l----~~~---p~nV~i~~~vPq~~L---l~~ 509 (646)
.+.|++.+|......+.+-.+.+++|++... ..+++.........+ .+. .+++.+.+..++.++ +..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHc
Confidence 4567778887654333444566778877653 334433221111112 111 478988887666544 788
Q ss_pred ccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHH
Q 006412 510 CSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAM 585 (646)
Q Consensus 510 a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~ 585 (646)
||+||+..| |.+.|+++.|+|+|+++...+ +..+.+.|++. .+. -+.++|.++|..++ ++..+.+++
T Consensus 278 ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~-~~~---~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 278 ADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNV-LVG---TDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred CcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEE-ecC---CCHHHHHHHHHHHhcCchhhhcCC
Confidence 999999999 888899999999999874322 33455567775 221 25899999999999 665555543
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.07 E-value=4e-08 Score=102.75 Aligned_cols=156 Identities=20% Similarity=0.212 Sum_probs=101.5
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCCCC------CCCCCcEEEeccCCcccc---cc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPHDWL---FP 508 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq~~L---l~ 508 (646)
.+.+++.+|+.. +.+-.+.+++++... ..++++..+......+ ...+++|.+.+++++.++ +.
T Consensus 198 ~~~~i~~~g~~~---~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 274 (374)
T cd03801 198 DEPVILFVGRLV---PRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYA 274 (374)
T ss_pred CCeEEEEecchh---hhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHH
Confidence 345666677763 222234445555432 3455554322111111 135689999999998876 89
Q ss_pred cccEEEE----cCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHH
Q 006412 509 QCSAVVH----HGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSR 583 (646)
Q Consensus 509 ~a~~vI~----HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~ 583 (646)
.+|++|+ -|..+++.||+++|+|+|+.+. ...+..++..+.|. .+ ...+++++.++|..++ +++.++.
T Consensus 275 ~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~-~~--~~~~~~~l~~~i~~~~~~~~~~~~ 347 (374)
T cd03801 275 AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGL-LV--PPGDPEALAEAILRLLDDPELRRR 347 (374)
T ss_pred hcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceE-Ee--CCCCHHHHHHHHHHHHcChHHHHH
Confidence 9999995 3556799999999999998765 33455565556664 33 3456899999999998 8876666
Q ss_pred HHHHHH-HhhcCCcHHHHHHHHHHhc
Q 006412 584 AMELAK-LIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 584 A~~la~-~l~~~~G~~~Av~~ie~~L 608 (646)
+.+-+. .+.+.-..+..++.+.+.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 348 LGEAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 555554 5556667777777776654
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.05 E-value=3.8e-08 Score=103.66 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=95.4
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc---CCeEEEEecCCCCCCC---CCCCCcEEEeccCCcccc---cccccEEE
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT---GQRGIIDRGWGDLGKI---TEVPDNIFLLEDCPHDWL---FPQCSAVV 514 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~---g~r~Iv~~G~~~~~~l---~~~p~nV~i~~~vPq~~L---l~~a~~vI 514 (646)
+.+++..|++.. .+-.+.++++++.. +.++++..+....... ....+++.+.+++++.++ +.++|++|
T Consensus 191 ~~~i~~~G~~~~---~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i 267 (359)
T cd03823 191 RLRFGFIGQLTP---HKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLV 267 (359)
T ss_pred ceEEEEEecCcc---ccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEE
Confidence 456666777632 22233445555543 5666655332221111 123579999999987776 89999999
Q ss_pred Ec-----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHH
Q 006412 515 HH-----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELA 588 (646)
Q Consensus 515 ~H-----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la 588 (646)
+. |...++.||+++|+|+|+-+.. .+...+...+.|. .+ ..-+.+++++++..++ +++.++.+.+-+
T Consensus 268 ~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~-~~--~~~d~~~l~~~i~~l~~~~~~~~~~~~~~ 340 (359)
T cd03823 268 VPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGL-LF--PPGDAEDLAAALERLIDDPDLLERLRAGI 340 (359)
T ss_pred EcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEE-EE--CCCCHHHHHHHHHHHHhChHHHHHHHHhH
Confidence 53 3345899999999999986543 3556666655675 33 3456899999999999 787666666555
Q ss_pred HHhhcCCcHHHHHHHHHHh
Q 006412 589 KLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 589 ~~l~~~~G~~~Av~~ie~~ 607 (646)
...... +..++.+++.
T Consensus 341 ~~~~~~---~~~~~~~~~~ 356 (359)
T cd03823 341 EPPRSI---EDQAEEYLKL 356 (359)
T ss_pred HHhhhH---HHHHHHHHHH
Confidence 443332 4444555444
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.04 E-value=3.7e-08 Score=104.39 Aligned_cols=150 Identities=16% Similarity=0.096 Sum_probs=92.4
Q ss_pred CCCcEEEEcCCCCCCChHHHHHHHHHHHHh---c-CCeEEEEecCCCCCCC-----CCCCCcEEEeccCCcccc---ccc
Q 006412 442 GPEPIYIGFGSMPLEDPKKTTEIILEALRD---T-GQRGIIDRGWGDLGKI-----TEVPDNIFLLEDCPHDWL---FPQ 509 (646)
Q Consensus 442 ~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~---~-g~r~Iv~~G~~~~~~l-----~~~p~nV~i~~~vPq~~L---l~~ 509 (646)
..+.+++..|++... +-.+.++++++. . +.++++.........+ ....+|+.+.++++++++ +..
T Consensus 218 ~~~~~i~~~G~~~~~---k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 294 (394)
T cd03794 218 DDKFVVLYAGNIGRA---QGLDTLLEAAALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAA 294 (394)
T ss_pred CCcEEEEEecCcccc---cCHHHHHHHHHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHh
Confidence 345666777776421 122333444443 2 4555554322111111 123478999999998876 899
Q ss_pred ccEEEEcCc---------hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHH
Q 006412 510 CSAVVHHGG---------AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPE 579 (646)
Q Consensus 510 a~~vI~HGG---------~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~ 579 (646)
+|++|.... .+++.||+++|+|+|+.+..+.+... ...+.|. .++ .-+.++++++|..++ |++
T Consensus 295 ~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~~~g~-~~~--~~~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 295 ADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEAGAGL-VVP--PGDPEALAAAILELLDDPE 367 (394)
T ss_pred hCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccCCcce-EeC--CCCHHHHHHHHHHHHhChH
Confidence 999996433 34479999999999998877654433 2225664 333 347899999999999 888
Q ss_pred HHHHHHHHHHHhhc-CCcHHHHH
Q 006412 580 VKSRAMELAKLIEN-EDGVAAAV 601 (646)
Q Consensus 580 ~r~~A~~la~~l~~-~~G~~~Av 601 (646)
.++++.+-+..... .-..+..+
T Consensus 368 ~~~~~~~~~~~~~~~~~s~~~~~ 390 (394)
T cd03794 368 ERAEMGENGRRYVEEKFSREKLA 390 (394)
T ss_pred HHHHHHHHHHHHHHHhhcHHHHH
Confidence 77776665554433 33444433
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.01 E-value=9.2e-07 Score=92.51 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=91.8
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHh-----cCCeEEEEecCCCCCCC-------CCCCCcEEEeccCCc-cccccc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRD-----TGQRGIIDRGWGDLGKI-------TEVPDNIFLLEDCPH-DWLFPQ 509 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~-----~g~r~Iv~~G~~~~~~l-------~~~p~nV~i~~~vPq-~~Ll~~ 509 (646)
.+.+++..|++... +-.+.++++++. .+.++++..+....... ....++|.+.++..+ ..++.+
T Consensus 187 ~~~~i~~~G~~~~~---k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (359)
T cd03808 187 DDPVFLFVARLLKD---KGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAA 263 (359)
T ss_pred CCcEEEEEeccccc---cCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHh
Confidence 34677777876422 122334444443 23555555332211111 123468888887322 123899
Q ss_pred ccEEEEcCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHH
Q 006412 510 CSAVVHHGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRA 584 (646)
Q Consensus 510 a~~vI~HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A 584 (646)
+|++|.... .++++||+++|+|+|+-+..+ +...++..+.|. .+ ..-+.+++.++|..++ +++.++.+
T Consensus 264 adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~-~~--~~~~~~~~~~~i~~l~~~~~~~~~~ 336 (359)
T cd03808 264 ADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGF-LV--PPGDAEALADAIERLIEDPELRARM 336 (359)
T ss_pred ccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceE-EE--CCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 999997543 579999999999999865443 344555556675 33 3457899999999988 88766665
Q ss_pred HHHHHHh-hcCCcHHHHHHHH
Q 006412 585 MELAKLI-ENEDGVAAAVDAF 604 (646)
Q Consensus 585 ~~la~~l-~~~~G~~~Av~~i 604 (646)
.+-+... .+.-..+..++.+
T Consensus 337 ~~~~~~~~~~~~s~~~~~~~~ 357 (359)
T cd03808 337 GQAARKRAEEEFDEEIVVKKL 357 (359)
T ss_pred HHHHHHHHHHhcCHHHHHHHh
Confidence 5554444 4444555555444
No 55
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.01 E-value=9e-08 Score=103.48 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=96.0
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCC------------CCCCCCCcEEEeccCCccc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLG------------KITEVPDNIFLLEDCPHDW 505 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~------------~l~~~p~nV~i~~~vPq~~ 505 (646)
...+++..|++... +-.+.+++++... +.++++..+..... ....+.+++.+.+++|+.+
T Consensus 219 ~~~~i~~~gr~~~~---k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 295 (398)
T cd03800 219 DKPRILAVGRLDPR---KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSRED 295 (398)
T ss_pred CCcEEEEEcccccc---cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHH
Confidence 34666777876421 2223345555432 45666665432210 0112357899999999887
Q ss_pred c---cccccEEEEcC----chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-C
Q 006412 506 L---FPQCSAVVHHG----GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-Q 577 (646)
Q Consensus 506 L---l~~a~~vI~HG----G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-d 577 (646)
+ +..+|++++.. -..++.||+++|+|+|+-...+ ....++..+.|. .++ ..+.++++++|..++ +
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~-~~~--~~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGL-LVD--PRDPEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeE-EeC--CCCHHHHHHHHHHHHhC
Confidence 6 89999999653 2468999999999999876443 455666667786 333 446999999999999 7
Q ss_pred HHHHHHHHHHHHHhh-cCCcHHHHHHH
Q 006412 578 PEVKSRAMELAKLIE-NEDGVAAAVDA 603 (646)
Q Consensus 578 p~~r~~A~~la~~l~-~~~G~~~Av~~ 603 (646)
++.++.+.+-+.... +.-..+..++.
T Consensus 369 ~~~~~~~~~~a~~~~~~~~s~~~~~~~ 395 (398)
T cd03800 369 PALRRRLSRAGLRRARARYTWERVAAR 395 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 776666555544432 33344444443
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.00 E-value=1.2e-07 Score=103.73 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=67.3
Q ss_pred CCcEEEeccCCcccc---cccccEEEE---cCch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCC
Q 006412 492 PDNIFLLEDCPHDWL---FPQCSAVVH---HGGA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLT 564 (646)
Q Consensus 492 p~nV~i~~~vPq~~L---l~~a~~vI~---HGG~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt 564 (646)
.++|.+.+++|+.++ +..+|++|. +.|. .++.||+++|+|+|+-.. ......+.....|. .++ ..+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~~~G~-lv~--~~d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDGENGL-LVD--FFD 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccCCceE-EcC--CCC
Confidence 478999999998876 789999985 2232 489999999999998643 34455555545665 333 456
Q ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHH
Q 006412 565 VENLSNAVRFML-QPEVKSRAMELAKL 590 (646)
Q Consensus 565 ~e~L~~aI~~lL-dp~~r~~A~~la~~ 590 (646)
+++|+++|..++ |++.++++.+-+..
T Consensus 353 ~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 353 PDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999 88766665555443
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.98 E-value=7.2e-08 Score=106.32 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=67.6
Q ss_pred CcEEEe-ccCCcccc---cccccEEEEc-------CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCC
Q 006412 493 DNIFLL-EDCPHDWL---FPQCSAVVHH-------GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPIS 561 (646)
Q Consensus 493 ~nV~i~-~~vPq~~L---l~~a~~vI~H-------GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~ 561 (646)
+++.+. +|+|.+++ +..+|++|.. |--+++.|++++|+|+|+... ......++..+.|. .+ .
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~~~G~-lv--~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHGENGL-VF--G 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCCCCEE-EE--C
Confidence 456655 68998877 8999999841 124579999999999998653 24556777777886 44 2
Q ss_pred CCCHHHHHHHHHHhh-C---HHHHHHHHHHHHHhh
Q 006412 562 QLTVENLSNAVRFML-Q---PEVKSRAMELAKLIE 592 (646)
Q Consensus 562 ~lt~e~L~~aI~~lL-d---p~~r~~A~~la~~l~ 592 (646)
+.++|+++|..++ | ++.++.+.+-++...
T Consensus 367 --d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 --DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred --CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 7999999999999 7 777777666655554
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.96 E-value=1.6e-07 Score=97.84 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEcCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcC-CCCCCcCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHHGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKG-LGPAPIPISQ 562 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G-~G~~~i~~~~ 562 (646)
+.+++.+.++ ..++ +.++|++|.... .++++||+++|+|+|+.+..+.+.. +...| .|. .+ +.
T Consensus 233 ~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~~~~g~-~~--~~ 303 (348)
T cd03820 233 LEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIEDGVNGL-LV--PN 303 (348)
T ss_pred CCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhccCcceE-Ee--CC
Confidence 4578888887 3433 899999997753 4789999999999998765544332 22333 664 23 35
Q ss_pred CCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHH
Q 006412 563 LTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAF 604 (646)
Q Consensus 563 lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~i 604 (646)
.+.++++++|..++ |++.++++.+-+..+...-..++.++.+
T Consensus 304 ~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
T cd03820 304 GDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQW 346 (348)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHh
Confidence 67899999999999 8988887777766655555555555443
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.96 E-value=2.3e-07 Score=98.82 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCcEEEeccCC-cccc---cccccEEEEcC----chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCC
Q 006412 491 VPDNIFLLEDCP-HDWL---FPQCSAVVHHG----GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQ 562 (646)
Q Consensus 491 ~p~nV~i~~~vP-q~~L---l~~a~~vI~HG----G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~ 562 (646)
..+++.+.++++ +..+ +..+|++|... ..++++||+++|+|+|+....+ ....+...+.|. .+ ..
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~-~~--~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGY-LA--KP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceE-Ee--CC
Confidence 567899999998 4443 89999999853 3589999999999999865432 122333334554 22 34
Q ss_pred CCHHHHHHHHHHhh-CHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHh
Q 006412 563 LTVENLSNAVRFML-QPEVKSRAMELAKLIE-NEDGVAAAVDAFHRH 607 (646)
Q Consensus 563 lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~-~~~G~~~Av~~ie~~ 607 (646)
.+.+++++++..++ +++.++++.+-+.... ..-..+..++.+.+.
T Consensus 315 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 361 (365)
T cd03825 315 GDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSL 361 (365)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 57899999999999 7775555555444432 333455555555554
No 60
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.94 E-value=1.4e-07 Score=99.57 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=86.1
Q ss_pred CCcEEEEcCCCCC-CChHHHHHHHHHHHHh--cCCeEEEEecCCCCCCC------CCCCCcEEEeccCCcccc---cccc
Q 006412 443 PEPIYIGFGSMPL-EDPKKTTEIILEALRD--TGQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPHDWL---FPQC 510 (646)
Q Consensus 443 ~pvVyVsfGS~~~-~~p~~l~~~i~~Al~~--~g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq~~L---l~~a 510 (646)
.+.+++..|++.. .+.+.+++. +..+.+ .+.++++..+......+ ....++|.+.+++|+.++ +..+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRA-FARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAA 279 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHc
Confidence 3455666677642 233334433 222332 34555555432211111 234689999999998876 8899
Q ss_pred cEEEEcC----chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHH
Q 006412 511 SAVVHHG----GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAM 585 (646)
Q Consensus 511 ~~vI~HG----G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~ 585 (646)
|++|... ...++.||+++|+|+|+... ...+..++..+.|. .++..+ . ++.+++..++ +++.++.+.
T Consensus 280 d~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~-~~~~~~--~-~~~~~i~~l~~~~~~~~~~~ 351 (374)
T cd03817 280 DLFVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGF-LFPPGD--E-ALAEALLRLLQDPELRRRLS 351 (374)
T ss_pred CEEEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeE-EeCCCC--H-HHHHHHHHHHhChHHHHHHH
Confidence 9999554 34789999999999998654 33556666666775 343322 2 8999999999 776554444
Q ss_pred HHHHHh
Q 006412 586 ELAKLI 591 (646)
Q Consensus 586 ~la~~l 591 (646)
+-++..
T Consensus 352 ~~~~~~ 357 (374)
T cd03817 352 KNAEES 357 (374)
T ss_pred HHHHHH
Confidence 444333
No 61
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.94 E-value=4e-07 Score=97.64 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=94.3
Q ss_pred CcEEEEcCCCCC-CChHHHHHHHHHHHHhcCCeEEEEecCCCCCCC------CCCCCcEEEeccCCcc-cccccccEEEE
Q 006412 444 EPIYIGFGSMPL-EDPKKTTEIILEALRDTGQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPHD-WLFPQCSAVVH 515 (646)
Q Consensus 444 pvVyVsfGS~~~-~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq~-~Ll~~a~~vI~ 515 (646)
+.+++.+|.+.. .+.+.+++.+.....+.+.++++.....+...+ ..+.++|.+.++.++. .++..+|++|.
T Consensus 197 ~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ 276 (371)
T cd04962 197 EKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLL 276 (371)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEe
Confidence 355666676632 233333333222222235566555322221111 1245789999976542 23899999994
Q ss_pred c----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHH
Q 006412 516 H----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKL 590 (646)
Q Consensus 516 H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~ 590 (646)
- |...++.||+++|+|+|+.... ..+..++.-..|. .++ .-+.++++++|..++ +++.++.+++-+..
T Consensus 277 ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~-~~~--~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 349 (371)
T cd04962 277 PSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGF-LVD--VGDVEAMAEYALSLLEDDELWQEFSRAARN 349 (371)
T ss_pred CCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceE-EcC--CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3 3456999999999999986543 3455555555664 333 357899999999998 88776666665554
Q ss_pred h-hcCCcHHHHHHHHHHh
Q 006412 591 I-ENEDGVAAAVDAFHRH 607 (646)
Q Consensus 591 l-~~~~G~~~Av~~ie~~ 607 (646)
. .+.-..+..++.+.+.
T Consensus 350 ~~~~~fs~~~~~~~~~~~ 367 (371)
T cd04962 350 RAAERFDSERIVPQYEAL 367 (371)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 4 4445555655555554
No 62
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.90 E-value=1.7e-06 Score=95.05 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=91.3
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc----CCeEEEEecCCC-CCCCC-----CCCCcEEEeccCCcccc---cccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT----GQRGIIDRGWGD-LGKIT-----EVPDNIFLLEDCPHDWL---FPQC 510 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~----g~r~Iv~~G~~~-~~~l~-----~~p~nV~i~~~vPq~~L---l~~a 510 (646)
+.+++..|++.. .+-.+.+++|++.. +.++++. |.+. .+.+. ...+||.+.+++|+.++ +..+
T Consensus 229 ~~~i~~~G~l~~---~kg~~~li~a~~~l~~~~~~~l~iv-G~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~a 304 (412)
T PRK10307 229 KKIVLYSGNIGE---KQGLELVIDAARRLRDRPDLIFVIC-GQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMA 304 (412)
T ss_pred CEEEEEcCcccc---ccCHHHHHHHHHHhccCCCeEEEEE-CCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhc
Confidence 356666787742 22334455666543 3555554 3332 12111 11248999999998775 7889
Q ss_pred cEEEEc---Cc-----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHH
Q 006412 511 SAVVHH---GG-----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVK 581 (646)
Q Consensus 511 ~~vI~H---GG-----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r 581 (646)
|++|.. ++ -+.+.|++++|+|+|+....+.. .+..++ +.|. .++ .-+.++|+++|.+++ |++.+
T Consensus 305 Di~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~-~~~--~~d~~~la~~i~~l~~~~~~~ 377 (412)
T PRK10307 305 DCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGV-CVE--PESVEALVAAIAALARQALLR 377 (412)
T ss_pred CEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcE-EeC--CCCHHHHHHHHHHHHhCHHHH
Confidence 987642 22 13478999999999998654421 222344 6775 343 467899999999998 88766
Q ss_pred HHHHHHHHHhh-cCCcHHHHHHHHHHh
Q 006412 582 SRAMELAKLIE-NEDGVAAAVDAFHRH 607 (646)
Q Consensus 582 ~~A~~la~~l~-~~~G~~~Av~~ie~~ 607 (646)
+.+.+-+.... +.-..+..++.+++.
T Consensus 378 ~~~~~~a~~~~~~~fs~~~~~~~~~~~ 404 (412)
T PRK10307 378 PKLGTVAREYAERTLDKENVLRQFIAD 404 (412)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 66666555432 233444444444443
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.87 E-value=9.7e-07 Score=93.84 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=82.2
Q ss_pred CcEEEEcCCCCCC-ChHHHHHHHHHHHHh--cCCeEEEEecCCCCCCC----------CCCCCcEEEeccCCcc-ccccc
Q 006412 444 EPIYIGFGSMPLE-DPKKTTEIILEALRD--TGQRGIIDRGWGDLGKI----------TEVPDNIFLLEDCPHD-WLFPQ 509 (646)
Q Consensus 444 pvVyVsfGS~~~~-~p~~l~~~i~~Al~~--~g~r~Iv~~G~~~~~~l----------~~~p~nV~i~~~vPq~-~Ll~~ 509 (646)
..+++..|.+... ..+.+.+. +..+.+ .+.++++.......... ..+.++|.+.++.+.. .++..
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~-~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ 263 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEA-LARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL 263 (355)
T ss_pred ceEEEEeeccccccCHHHHHHH-HHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh
Confidence 4566666776422 33334333 333433 24555555432221111 1345789999983221 23899
Q ss_pred ccEEEEcC----c-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh--CHHHHH
Q 006412 510 CSAVVHHG----G-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML--QPEVKS 582 (646)
Q Consensus 510 a~~vI~HG----G-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL--dp~~r~ 582 (646)
+|++|+-. | .++++||+++|+|+|+....+ ....+...+.|. .+ ..-+.++++++|..++ +++.+.
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~-~~--~~~~~~~l~~~i~~~~~~~~~~~~ 336 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGL-LV--PPGDAEALAQALDQILSLLPEGRA 336 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceE-Ee--CCCCHHHHHHHHHHHHhhCHHHHH
Confidence 99999643 2 369999999999999865432 344555555675 33 3568999999996554 676666
Q ss_pred HHHHHHHH
Q 006412 583 RAMELAKL 590 (646)
Q Consensus 583 ~A~~la~~ 590 (646)
++.+-+..
T Consensus 337 ~~~~~a~~ 344 (355)
T cd03819 337 KMFAKARM 344 (355)
T ss_pred HHHHHHHH
Confidence 55554443
No 64
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.86 E-value=3.8e-08 Score=105.37 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=112.7
Q ss_pred CCcEEEeCceeccCCCCCCCchhHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcC---CeEEEEecCCCCCCC
Q 006412 412 GSLVAVVGYCLLNLGSKYQPQENFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTG---QRGIIDRGWGDLGKI 488 (646)
Q Consensus 412 ~p~v~~vG~~~~~~~~~~~~~~~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g---~r~Iv~~G~~~~~~l 488 (646)
+..+.++|..+.+.-... +.. ++ ..++|.+--||....- ..++..++++++... .++++. +....+.+
T Consensus 143 g~~~~~VGhPl~d~~~~~--~~~----~~-~~~~I~llPGSR~~Ei-~~llP~~~~aa~~L~~~~~~~~i~-~a~~~~~i 213 (347)
T PRK14089 143 QSKATYVGHPLLDEIKEF--KKD----LD-KEGTIAFMPGSRKSEI-KRLMPIFKELAKKLEGKEKILVVP-SFFKGKDL 213 (347)
T ss_pred CCCCEEECCcHHHhhhhh--hhh----cC-CCCEEEEECCCCHHHH-HHHHHHHHHHHHHHhhcCcEEEEe-CCCcHHHH
Confidence 445678998765421100 111 22 2368889999974322 244454456665433 334443 22221111
Q ss_pred CC-C--CCcEEEeccCCcccccccccEEEEcCchhHHHHHHHhCCCeeec-CCCCChHHHHHHHH---HcCCCCCCc---
Q 006412 489 TE-V--PDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVV-PFFGDQFFWGDRVQ---QKGLGPAPI--- 558 (646)
Q Consensus 489 ~~-~--p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~viv-P~~~DQ~~nA~~ve---~~G~G~~~i--- 558 (646)
.+ . ...+.+.+ ...+++..||++|+-.|..|+ |+..+|+|+|+. ....-|++||+++. ..|+.- .+
T Consensus 214 ~~~~~~~~~~~~~~--~~~~~m~~aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~N-ii~~~ 289 (347)
T PRK14089 214 KEIYGDISEFEISY--DTHKALLEAEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLAN-IFFDF 289 (347)
T ss_pred HHHHhcCCCcEEec--cHHHHHHhhhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHH-HhcCC
Confidence 11 1 02333333 223468999999999999888 999999999993 22356899999988 445442 22
Q ss_pred ----------CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 006412 559 ----------PISQLTVENLSNAVRFMLQPEVKSRAMELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 559 ----------~~~~lt~e~L~~aI~~lLdp~~r~~A~~la~~l~~~~G~~~Av~~ie~ 606 (646)
-.++.|++.|.+++.+.-....++...++.+.+. .++.+++++.+.+
T Consensus 290 ~~~~~vvPEllQ~~~t~~~la~~i~~~~~~~~~~~~~~l~~~l~-~~a~~~~A~~i~~ 346 (347)
T PRK14089 290 LGKEPLHPELLQEFVTVENLLKAYKEMDREKFFKKSKELREYLK-HGSAKNVAKILKE 346 (347)
T ss_pred CcccccCchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHhc
Confidence 3477999999999987324567777777777774 4788888887764
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.84 E-value=1.4e-06 Score=95.18 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=76.3
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQL 563 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~l 563 (646)
+.++|.+.+++|+.++ +..+|++|.- |...+++||+++|+|+|+....+ ....++..+.|. .+ ..-
T Consensus 281 l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~-~~--~~~ 353 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGL-LV--DGH 353 (405)
T ss_pred CCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceE-EC--CCC
Confidence 4578999999998765 8999999853 33358999999999999876543 334555556675 33 345
Q ss_pred CHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 564 TVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 564 t~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
+.++++++|.+++ +++.++.+.+-+....+.-..+..++.++++
T Consensus 354 d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~ 398 (405)
T TIGR03449 354 DPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLLSS 398 (405)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7899999999999 7776666655554443333444555444443
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.78 E-value=1.1e-06 Score=97.01 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=75.0
Q ss_pred ccccccEEEEc-----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHH
Q 006412 506 LFPQCSAVVHH-----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPE 579 (646)
Q Consensus 506 Ll~~a~~vI~H-----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~ 579 (646)
+++.+|+++.. +|..+++|++++|+|+|+-|..+++......+.+.|+++ . .-++++|+++|..++ |++
T Consensus 316 ~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~-~----~~d~~~La~~l~~ll~~~~ 390 (425)
T PRK05749 316 LYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAI-Q----VEDAEDLAKAVTYLLTDPD 390 (425)
T ss_pred HHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeE-E----ECCHHHHHHHHHHHhcCHH
Confidence 38999985442 344569999999999999999888888888887777775 2 246899999999999 888
Q ss_pred HHHHHHHHHHHhhc--CCcHHHHHHHHHHhcC
Q 006412 580 VKSRAMELAKLIEN--EDGVAAAVDAFHRHLP 609 (646)
Q Consensus 580 ~r~~A~~la~~l~~--~~G~~~Av~~ie~~L~ 609 (646)
.++++.+-+...-. .+..++.++.+.+.|+
T Consensus 391 ~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 391 ARQAYGEAGVAFLKQNQGALQRTLQLLEPYLP 422 (425)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHhcc
Confidence 87777766655432 3445778888877664
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.75 E-value=1.1e-06 Score=93.17 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=90.3
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhcC-CeEEEEecCCCCCCC------CCCCCcEEEeccCCcccc---cccccE
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDTG-QRGIIDRGWGDLGKI------TEVPDNIFLLEDCPHDWL---FPQCSA 512 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g-~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq~~L---l~~a~~ 512 (646)
.+.+++..|++. +.+-.+.+++++++.. .++++.........+ ....+||.+.+++|+.++ +..||+
T Consensus 190 ~~~~i~~~G~~~---~~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~ 266 (357)
T cd03795 190 GRPFFLFVGRLV---YYKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDV 266 (357)
T ss_pred CCcEEEEecccc---cccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCE
Confidence 345667777763 2233455678887776 666655432211111 234579999999998765 788999
Q ss_pred EEEc-----Cc-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHH
Q 006412 513 VVHH-----GG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAM 585 (646)
Q Consensus 513 vI~H-----GG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~ 585 (646)
+|.- .| ..+++||+++|+|+|+-...+....+.. ..+.|. .+ ..-+.++++++|..++ |++.+++++
T Consensus 267 ~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~-~~--~~~d~~~~~~~i~~l~~~~~~~~~~~ 340 (357)
T cd03795 267 FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGL-VV--PPGDPAALAEAIRRLLEDPELRERLG 340 (357)
T ss_pred EEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceE-Ee--CCCCHHHHHHHHHHHHHCHHHHHHHH
Confidence 9832 33 3479999999999999765555443332 245664 22 3457999999999999 887666555
Q ss_pred HHHH
Q 006412 586 ELAK 589 (646)
Q Consensus 586 ~la~ 589 (646)
+-+.
T Consensus 341 ~~~~ 344 (357)
T cd03795 341 EAAR 344 (357)
T ss_pred HHHH
Confidence 4443
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.75 E-value=9.3e-06 Score=85.61 Aligned_cols=149 Identities=18% Similarity=0.194 Sum_probs=95.0
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCC---------CCCCCCCcEEEeccCCcccc--
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLG---------KITEVPDNIFLLEDCPHDWL-- 506 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~---------~l~~~p~nV~i~~~vPq~~L-- 506 (646)
.+.+++..|++.. .+-.+.++++++.. +.++++. |.+... ....+.++|.+.++++++++
T Consensus 202 ~~~~i~~~G~~~~---~K~~~~li~a~~~l~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 277 (375)
T cd03821 202 DKRIILFLGRLHP---KKGLDLLIEAFAKLAERFPDWHLVIA-GPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAA 277 (375)
T ss_pred CCcEEEEEeCcch---hcCHHHHHHHHHHhhhhcCCeEEEEE-CCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHH
Confidence 3456667777632 22233445555432 3455544 332211 01234689999999997776
Q ss_pred -cccccEEEEcCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHH
Q 006412 507 -FPQCSAVVHHGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEV 580 (646)
Q Consensus 507 -l~~a~~vI~HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~ 580 (646)
+..+|++|.-.- ..++.||+++|+|+|+-+.. .....+.. +.|. ..+ .+.++++++|..++ +++.
T Consensus 278 ~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~-~~~~-~~~---~~~~~~~~~i~~l~~~~~~ 348 (375)
T cd03821 278 ALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY-GCGW-VVD---DDVDALAAALRRALELPQR 348 (375)
T ss_pred HHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc-CceE-EeC---CChHHHHHHHHHHHhCHHH
Confidence 899999986432 57899999999999987643 34445555 7775 332 34599999999999 8777
Q ss_pred HHHHHHHHHHh-hcCCcHHHHHHHH
Q 006412 581 KSRAMELAKLI-ENEDGVAAAVDAF 604 (646)
Q Consensus 581 r~~A~~la~~l-~~~~G~~~Av~~i 604 (646)
++.+.+.+... .+.-..+..++.+
T Consensus 349 ~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 349 LKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 77666666555 4555566655554
No 69
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.74 E-value=2.2e-06 Score=91.13 Aligned_cols=154 Identities=13% Similarity=0.058 Sum_probs=94.5
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCCCC------CCCCCcEEEeccCCc-ccccccc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPH-DWLFPQC 510 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq-~~Ll~~a 510 (646)
.+.+++..|++.. .+-.+.++++++.. +.++++..+......+ ....++|.+.++..+ ..++..+
T Consensus 187 ~~~~~l~~g~~~~---~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 263 (360)
T cd04951 187 DTFVILAVGRLVE---AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAA 263 (360)
T ss_pred CCEEEEEEeeCch---hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhh
Confidence 3467777787632 22233345554432 4666665322211111 124578999987643 2348999
Q ss_pred cEEEEcCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh--CHHHHHHH
Q 006412 511 SAVVHHGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML--QPEVKSRA 584 (646)
Q Consensus 511 ~~vI~HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL--dp~~r~~A 584 (646)
|++|.-.. .+++.||+++|+|+|+-. ...+...++..|... ..-+.++++++|.+++ +++.++.+
T Consensus 264 d~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~~g~~~-----~~~~~~~~~~~i~~ll~~~~~~~~~~ 334 (360)
T cd04951 264 DLFVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGDSGLIV-----PISDPEALANKIDEILKMSGEERDII 334 (360)
T ss_pred ceEEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecCCceEe-----CCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 99987533 578999999999999753 344555555544443 2467899999999997 56666655
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 585 MELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 585 ~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.+....+.+.-..+..++.+++.+
T Consensus 335 ~~~~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 335 GARRERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHh
Confidence 554455555556666666666654
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.74 E-value=5.6e-06 Score=87.63 Aligned_cols=110 Identities=22% Similarity=0.315 Sum_probs=79.9
Q ss_pred CCCcEEEec-cCCcccc---cccccEEEEc------CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCC
Q 006412 491 VPDNIFLLE-DCPHDWL---FPQCSAVVHH------GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPI 560 (646)
Q Consensus 491 ~p~nV~i~~-~vPq~~L---l~~a~~vI~H------GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~ 560 (646)
+.++|.+.+ |+|+.++ ++.+|++|.- |..++++||+++|+|+|+-+..+ ...+...+.|. .++
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~-~~~- 317 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGL-LVP- 317 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcE-EEc-
Confidence 467899886 4998765 8999999942 44568999999999999877554 23344456664 333
Q ss_pred CCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 561 SQLTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 561 ~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.-+.+++++++..++ +++.+.++.+-+.....+-..+..++.+.+++
T Consensus 318 -~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 318 -PGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred -CCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 346899999999999 77777666666666555567777777776654
No 71
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.74 E-value=1.3e-06 Score=91.75 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=82.1
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCCCC------CCCCCcEEEeccCCcccc---cc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPHDWL---FP 508 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq~~L---l~ 508 (646)
.+.+++..|++.. .+-.+.++++++.. +.++++.........+ ....++|.+.+++++.++ +.
T Consensus 201 ~~~~i~~~g~~~~---~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 277 (377)
T cd03798 201 DKKVILFVGRLVP---RKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYA 277 (377)
T ss_pred CceEEEEeccCcc---ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHH
Confidence 4466677777642 22223344444432 3444444322111111 134679999999998776 78
Q ss_pred cccEEEE----cCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHH
Q 006412 509 QCSAVVH----HGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEV 580 (646)
Q Consensus 509 ~a~~vI~----HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~ 580 (646)
+||++|. -|..+++.||+++|+|+|+-+..+ ....++..+.|. .+ ..-+.+++.++|..++ +++.
T Consensus 278 ~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~-~~--~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 278 AADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGL-LV--PPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred hcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCccee-EE--CCCCHHHHHHHHHHHhcCcHH
Confidence 9999984 355688999999999999865443 345566656664 23 4567999999999999 6663
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.70 E-value=2.1e-05 Score=85.17 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEcC----chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHHG----GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQL 563 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~HG----G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~l 563 (646)
+.++|.+.+++|...+ +..+|+++... -..+++||+++|+|+|+.-..+ ....+...+.|. .++ .
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~-~~~---~ 349 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGF-LCE---P 349 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceE-EeC---C
Confidence 4589999999998765 89999998532 1367899999999999875433 334455556675 332 3
Q ss_pred CHHHHHHHHHHhh-CHHHHHHHHHHHH
Q 006412 564 TVENLSNAVRFML-QPEVKSRAMELAK 589 (646)
Q Consensus 564 t~e~L~~aI~~lL-dp~~r~~A~~la~ 589 (646)
+.++++++|..++ +++.++++.+-+.
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~ 376 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGR 376 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 7899999999999 7766655554443
No 73
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.62 E-value=6e-06 Score=89.55 Aligned_cols=314 Identities=16% Similarity=0.140 Sum_probs=159.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCc--------hhhhhhCCceEEEcCCChHHHHHHHhhcCCCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEF-GHRVRLATHANF--------RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLI 261 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~r-GH~Vt~~t~~~~--------~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~ 261 (646)
|||++ ..|++-.+.-+-.+.++|+++ +.++.++.+..+ ...+...|+... .+.. ...+ ...+
T Consensus 1 ~ki~~-v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~---~~~~--~~~~-~~~~-- 71 (365)
T TIGR03568 1 KKICV-VTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDID---EKIE--ILLD-SDSN-- 71 (365)
T ss_pred CeEEE-EEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCC---Cccc--cccC-CCCC--
Confidence 46654 469999999999999999985 788888754433 233444454321 1100 0000 0000
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEEC---CCccchHHHHHHhCCCEEEEEccCCCCCCCCCC
Q 006412 262 PSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIAN---PPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPH 338 (646)
Q Consensus 262 ~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad---~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~ 338 (646)
.+....+......+.+++.. ++||+||.- ..++++..+|..+|||++-+.-.-.+.. .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~---------------~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~----~ 132 (365)
T TIGR03568 72 AGMAKSMGLTIIGFSDAFER---------------LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEG----A 132 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHH---------------hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCC----C
Confidence 00001122223344444433 589998764 2345678999999999986654433211 0
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEe
Q 006412 339 PLARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVV 418 (646)
Q Consensus 339 pl~~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~v 418 (646)
+.-..+.+.-.+.++.+ .......+.+.+ .|.+ +.++.++
T Consensus 133 -----~eE~~r~~i~~la~l~f-~~t~~~~~~L~~--eg~~--------------------------------~~~i~~t 172 (365)
T TIGR03568 133 -----IDESIRHAITKLSHLHF-VATEEYRQRVIQ--MGED--------------------------------PDRVFNV 172 (365)
T ss_pred -----chHHHHHHHHHHHhhcc-CCCHHHHHHHHH--cCCC--------------------------------CCcEEEE
Confidence 00000000000000000 000000011110 1111 2356667
Q ss_pred CceeccCCC--CCCCchhHHHhH--hcCCCcEEEEcCCCC--CCChHHHHHHHHHHHHhcCCeEEEE--ecCCCC----C
Q 006412 419 GYCLLNLGS--KYQPQENFVQWI--QRGPEPIYIGFGSMP--LEDPKKTTEIILEALRDTGQRGIID--RGWGDL----G 486 (646)
Q Consensus 419 G~~~~~~~~--~~~~~~~l~~wL--~~~~pvVyVsfGS~~--~~~p~~l~~~i~~Al~~~g~r~Iv~--~G~~~~----~ 486 (646)
|....+.-. ......++.+.+ +.+++.|+|.+=... ...+.+.+..+++++.+.+.++++. .+.... .
T Consensus 173 G~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~ 252 (365)
T TIGR03568 173 GSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINE 252 (365)
T ss_pred CCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHH
Confidence 765433110 011122333322 223467777775432 3343444566688888776444333 221110 0
Q ss_pred CCCC-C--CCcEEEeccCCcccc---cccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCC
Q 006412 487 KITE-V--PDNIFLLEDCPHDWL---FPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPI 560 (646)
Q Consensus 487 ~l~~-~--p~nV~i~~~vPq~~L---l~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~ 560 (646)
.+.+ . .+++.+.+.+++.++ +.+|+++|+-.+.|. .||.+.|+|+|.+- +-+ .-+ +.|..+ +..
T Consensus 253 ~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~g~nv--l~v 322 (365)
T TIGR03568 253 AIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LRADSV--IDV 322 (365)
T ss_pred HHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hhcCeE--EEe
Confidence 1111 1 468999988877765 899999999886655 99999999999773 211 111 223322 222
Q ss_pred CCCCHHHHHHHHHHhhCHHHHHH
Q 006412 561 SQLTVENLSNAVRFMLQPEVKSR 583 (646)
Q Consensus 561 ~~lt~e~L~~aI~~lLdp~~r~~ 583 (646)
..++++|.+++..+++++++++
T Consensus 323 -g~~~~~I~~a~~~~~~~~~~~~ 344 (365)
T TIGR03568 323 -DPDKEEIVKAIEKLLDPAFKKS 344 (365)
T ss_pred -CCCHHHHHHHHHHHhChHHHHH
Confidence 5678999999999767654444
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.60 E-value=2.6e-05 Score=85.29 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=69.6
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEcC---ch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHHG---GA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQL 563 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~HG---G~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~l 563 (646)
+.++|.+.+++|++++ ++.+|++|.-. |. .++.||+++|+|+|+-+..+- ...++. |.+. +. ..
T Consensus 248 l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~-~~~~--~~--~~ 318 (398)
T cd03796 248 LQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP-DMIL--LA--EP 318 (398)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC-Ccee--ec--CC
Confidence 4578999999998776 89999998632 33 499999999999998766432 233333 3332 22 23
Q ss_pred CHHHHHHHHHHhh-CHHHH----HHHH-HHHHHhhcCCcHHHHHHHHHHhcC
Q 006412 564 TVENLSNAVRFML-QPEVK----SRAM-ELAKLIENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 564 t~e~L~~aI~~lL-dp~~r----~~A~-~la~~l~~~~G~~~Av~~ie~~L~ 609 (646)
+.+++++++.+++ ++..+ ++++ .+.+.+.-+..+++..+..++++.
T Consensus 319 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 319 DVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRILQ 370 (398)
T ss_pred CHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 7899999999998 43212 2222 223333333445555555555553
No 75
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.59 E-value=4.9e-06 Score=88.50 Aligned_cols=134 Identities=11% Similarity=0.115 Sum_probs=82.0
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCC-CC------CCCCCcEEEeccCCc-cccccc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLG-KI------TEVPDNIFLLEDCPH-DWLFPQ 509 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~-~l------~~~p~nV~i~~~vPq-~~Ll~~ 509 (646)
.+.+.+..|++. +.+-.+.+++++... +.++++. |.+... .+ ..+.++|.+.++..+ ..++..
T Consensus 191 ~~~~i~~vGr~~---~~Kg~~~li~a~~~l~~~~~~~~l~iv-G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 266 (358)
T cd03812 191 DKFVIGHVGRFS---EQKNHEFLIEIFAELLKKNPNAKLLLV-GDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQA 266 (358)
T ss_pred CCEEEEEEeccc---cccChHHHHHHHHHHHHhCCCeEEEEE-eCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHh
Confidence 345666667763 222233444444432 4455554 333211 11 234688999998322 223899
Q ss_pred ccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHH
Q 006412 510 CSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRA 584 (646)
Q Consensus 510 a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A 584 (646)
||++|+- |-..+++||+++|+|+|+-...+ ....+.. +.|. +. ..-++++++++|.+++ |++.++++
T Consensus 267 adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~--~~-~~~~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 267 MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKF--LS-LDESPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccE--Ee-CCCCHHHHHHHHHHHHhCcchhhhh
Confidence 9999975 44689999999999999865544 2334444 5553 22 2345899999999999 88776665
Q ss_pred HHHH
Q 006412 585 MELA 588 (646)
Q Consensus 585 ~~la 588 (646)
...+
T Consensus 339 ~~~~ 342 (358)
T cd03812 339 ESIK 342 (358)
T ss_pred hhhh
Confidence 4443
No 76
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.59 E-value=6.4e-05 Score=83.57 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=78.4
Q ss_pred CCCcEEEeccCCcccc---cccc----cEEEEcC---c-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQC----SAVVHHG---G-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIP 559 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a----~~vI~HG---G-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~ 559 (646)
+.++|.+.++++++++ +..+ |+||... | -.+++||+++|+|+|+-...+ ....+.....|. .++
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~-lv~ 389 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGL-LVD 389 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEE-EeC
Confidence 4678999999988776 5655 8998643 3 469999999999999876543 444555545665 333
Q ss_pred CCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhc
Q 006412 560 ISQLTVENLSNAVRFML-QPEVKSRAMELAKL-IENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 560 ~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~-l~~~~G~~~Av~~ie~~L 608 (646)
.-++++|+++|.+++ |++.++.+.+-+.. +.+.-..+..++.++++|
T Consensus 390 --~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 --VLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 457899999999999 88776665555543 344456777777776654
No 77
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.56 E-value=4.9e-06 Score=88.08 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=92.7
Q ss_pred CCcEEEEcCCCCC-CChHHHHHHHHHHHHhc--CCeEEEEecCCCCCC-C------CCCCCcEEEeccCCcccc---ccc
Q 006412 443 PEPIYIGFGSMPL-EDPKKTTEIILEALRDT--GQRGIIDRGWGDLGK-I------TEVPDNIFLLEDCPHDWL---FPQ 509 (646)
Q Consensus 443 ~pvVyVsfGS~~~-~~p~~l~~~i~~Al~~~--g~r~Iv~~G~~~~~~-l------~~~p~nV~i~~~vPq~~L---l~~ 509 (646)
.+.+.+..|++.. .+.+.+++. +..+... +.++++..+...... . ....++|.+.+++|+.++ +..
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 272 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEA-FARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRG 272 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHH-HHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhh
Confidence 3455666677642 233334333 2222222 245555533222111 1 235789999999998876 789
Q ss_pred ccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHH
Q 006412 510 CSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRA 584 (646)
Q Consensus 510 a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A 584 (646)
+|++|.- |..+++.||+++|+|+|+-...+ ....+...|.. + ...+.+++.++|..++ |++.+..+
T Consensus 273 ~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~---~--~~~~~~~~~~~i~~l~~~~~~~~~~ 343 (365)
T cd03809 273 ARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDAALY---F--DPLDPEALAAAIERLLEDPALREEL 343 (365)
T ss_pred hhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCceee---e--CCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 9998854 33468999999999999865421 11122223333 2 2347999999999988 88888887
Q ss_pred HHHHHHhhcCCcHHHHHHHH
Q 006412 585 MELAKLIENEDGVAAAVDAF 604 (646)
Q Consensus 585 ~~la~~l~~~~G~~~Av~~i 604 (646)
.+.+......-..++.++.+
T Consensus 344 ~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 344 RERGLARAKRFSWEKTARRT 363 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 77766555555555555443
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.56 E-value=1.8e-05 Score=82.98 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=90.1
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHh-----cCCeEEEEecCCCCCC-------CCCCCCcEEEeccCCc-ccccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRD-----TGQRGIIDRGWGDLGK-------ITEVPDNIFLLEDCPH-DWLFPQC 510 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~-----~g~r~Iv~~G~~~~~~-------l~~~p~nV~i~~~vPq-~~Ll~~a 510 (646)
..+++.+|+... .+-.+.++++++. .+.++++......... ...+.+++.+.+.... ..++..+
T Consensus 193 ~~~i~~~G~~~~---~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~a 269 (365)
T cd03807 193 TFLIGIVARLHP---QKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNAL 269 (365)
T ss_pred CeEEEEecccch---hcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhC
Confidence 456667777632 2223344555443 2455555532221111 1124567888775432 2348999
Q ss_pred cEEEEcCch----hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHH
Q 006412 511 SAVVHHGGA----GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAM 585 (646)
Q Consensus 511 ~~vI~HGG~----gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~ 585 (646)
|++|..... +++.||+++|+|+|+.... .+...+.. .|. .++ .-+.+++.++|..++ +++.++...
T Consensus 270 di~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~-~~~--~~~~~~l~~~i~~l~~~~~~~~~~~ 340 (365)
T cd03807 270 DVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGF-LVP--PGDPEALAEAIEALLADPALRQALG 340 (365)
T ss_pred CEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCE-EeC--CCCHHHHHHHHHHHHhChHHHHHHH
Confidence 999976554 8999999999999985443 34444544 443 232 346899999999999 766555444
Q ss_pred HHH-HHhhcCCcHHHHHHHHHHh
Q 006412 586 ELA-KLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 586 ~la-~~l~~~~G~~~Av~~ie~~ 607 (646)
+.+ +.+++.-..+..++.+.+.
T Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~ 363 (365)
T cd03807 341 EAARERIEENFSIEAMVEAYEEL 363 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 443 3334445666777666654
No 79
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.55 E-value=2.9e-05 Score=82.32 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=66.9
Q ss_pred CCCcEEEeccCCcccc---cccccEEEE----------cCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVH----------HGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAP 557 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~----------HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~ 557 (646)
++++|.+.+++|++++ +.++|++|. -|.-++++|++++|+|+|+.+..+ ....++....|. .
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~-~ 308 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGL-L 308 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceE-E
Confidence 4689999999998776 789999998 344579999999999999876532 223444444675 2
Q ss_pred cCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHH
Q 006412 558 IPISQLTVENLSNAVRFML-QPEVKSRAMELA 588 (646)
Q Consensus 558 i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la 588 (646)
+ ..-+.++++++|..++ +++.+..+.+-+
T Consensus 309 ~--~~~~~~~l~~~i~~~~~~~~~~~~~~~~a 338 (355)
T cd03799 309 V--PPGDPEALADAIERLLDDPELRREMGEAG 338 (355)
T ss_pred e--CCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 3 3448999999999999 776555554444
No 80
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.52 E-value=1.7e-05 Score=84.37 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=90.6
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhcC--CeEEEEecCCCCCC-------CCCCCCcEEEeccCCcccc---cccccE
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDTG--QRGIIDRGWGDLGK-------ITEVPDNIFLLEDCPHDWL---FPQCSA 512 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~g--~r~Iv~~G~~~~~~-------l~~~p~nV~i~~~vPq~~L---l~~a~~ 512 (646)
..++..|++.. .+-.+.+++|+++.. .++++..+...... .....++|.+.+++|+.++ +..+|+
T Consensus 194 ~~i~~~G~~~~---~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 270 (363)
T cd04955 194 RYYLLVGRIVP---ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL 270 (363)
T ss_pred cEEEEEecccc---cCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE
Confidence 34455677642 222345677777654 56655543212111 1234689999999999865 778888
Q ss_pred EEEcCch-----hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHH
Q 006412 513 VVHHGGA-----GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAME 586 (646)
Q Consensus 513 vI~HGG~-----gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~ 586 (646)
++-+.-. +++.||+++|+|+|+....+. ...++..|.. .+. -+ .++++|..++ +++.+.++.+
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~~g~~---~~~--~~--~l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGDKAIY---FKV--GD--DLASLLEELEADPEEVSAMAK 339 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecCCeeE---ecC--ch--HHHHHHHHHHhCHHHHHHHHH
Confidence 8876543 579999999999998754421 1222222332 221 11 2999999999 7766666555
Q ss_pred HHHHh-hcCCcHHHHHHHHHHhc
Q 006412 587 LAKLI-ENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 587 la~~l-~~~~G~~~Av~~ie~~L 608 (646)
-+... .+.-..+..++.+++.+
T Consensus 340 ~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 340 AARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 55443 33346667766666553
No 81
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.52 E-value=0.0001 Score=79.58 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=89.0
Q ss_pred CcEEEEcCCCCC-CChHHHHHHHHHHHHhc-----CCeEEEEecCCCC-CCC------CCCCCcEEEeccCCc-cccccc
Q 006412 444 EPIYIGFGSMPL-EDPKKTTEIILEALRDT-----GQRGIIDRGWGDL-GKI------TEVPDNIFLLEDCPH-DWLFPQ 509 (646)
Q Consensus 444 pvVyVsfGS~~~-~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~-~~l------~~~p~nV~i~~~vPq-~~Ll~~ 509 (646)
+.+.+..|.+.. .+...+++.+.+.+++. +.++++. |.+.. +.+ ..+.+++++.++... ..+++.
T Consensus 194 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~-G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 272 (374)
T TIGR03088 194 SVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIV-GDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQA 272 (374)
T ss_pred CeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEe-cCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh
Confidence 467777777743 23333444332222222 3455554 33321 111 123567777775322 233899
Q ss_pred ccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHH
Q 006412 510 CSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRA 584 (646)
Q Consensus 510 a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A 584 (646)
+|++|.- |-..+++||+++|+|+|+-...+ +...++.-..|. .++ .-+.++++++|..++ +++.+...
T Consensus 273 adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~-~~~--~~d~~~la~~i~~l~~~~~~~~~~ 345 (374)
T TIGR03088 273 LDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGA-LVP--PGDAVALARALQPYVSDPAARRAH 345 (374)
T ss_pred cCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceE-EeC--CCCHHHHHHHHHHHHhCHHHHHHH
Confidence 9999942 44679999999999999976543 344555445564 333 467899999999998 77665544
Q ss_pred HHHHHH-hhcCCcHHHHHHHHHHh
Q 006412 585 MELAKL-IENEDGVAAAVDAFHRH 607 (646)
Q Consensus 585 ~~la~~-l~~~~G~~~Av~~ie~~ 607 (646)
.+-+.. +.+.-..+..++.+++.
T Consensus 346 ~~~a~~~~~~~fs~~~~~~~~~~~ 369 (374)
T TIGR03088 346 GAAGRARAEQQFSINAMVAAYAGL 369 (374)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444333 23334445555444443
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.51 E-value=1e-05 Score=87.19 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=95.3
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc--CCeEEEEecCCCCCCC------CCCCCcEEEeccCCc--ccc---cccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT--GQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPH--DWL---FPQC 510 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~--g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq--~~L---l~~a 510 (646)
+.+++..|.+.....+. ...+++++... +.++++.......+.+ ..++++|.+.++++. ..+ +..+
T Consensus 180 ~~~i~~~Grl~~~~~k~-~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKN-VKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred CcEEEEEEEEecccCcC-HHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 35556666653211122 23456666654 3455554322221111 135689999999854 343 5678
Q ss_pred cEEEEc----CchhHHHHHHHhCCCeeecC-CCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHH--HHH
Q 006412 511 SAVVHH----GGAGTTATGLKAGCPTTVVP-FFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPE--VKS 582 (646)
Q Consensus 511 ~~vI~H----GG~gTt~EaL~~GvP~vivP-~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~--~r~ 582 (646)
|++|.. |-..++.||+++|+|+|+.- ..+ ....++....|. .+ ..-+.++++++|..++ +++ ...
T Consensus 259 d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~-lv--~~~d~~~la~~i~~l~~~~~~~~~~ 331 (359)
T PRK09922 259 SALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGE-LY--TPGNIDEFVGKLNKVISGEVKYQHD 331 (359)
T ss_pred cEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceE-EE--CCCCHHHHHHHHHHHHhCcccCCHH
Confidence 999964 33589999999999999875 333 224555555674 33 3468999999999999 776 344
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 583 RAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 583 ~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
+.++....+..+.-.++.++.+++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 332 AIPNSIERFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 55555555555555555566665543
No 83
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.49 E-value=6e-05 Score=81.57 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=72.4
Q ss_pred CCCcEEEeccC--Ccccc---cccccEEEEcCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCC
Q 006412 491 VPDNIFLLEDC--PHDWL---FPQCSAVVHHGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPIS 561 (646)
Q Consensus 491 ~p~nV~i~~~v--Pq~~L---l~~a~~vI~HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~ 561 (646)
..+++.+.++. +...+ ++.+|+|+.-.- ..++.||+++|+|+|+-...+ ....+...+.|. .++
T Consensus 250 ~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~-~~~-- 322 (372)
T cd03792 250 GDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGF-LVD-- 322 (372)
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceE-EeC--
Confidence 45678888876 55444 799999996432 359999999999999876433 223455555565 332
Q ss_pred CCCHHHHHHHHHHhh-CHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHh
Q 006412 562 QLTVENLSNAVRFML-QPEVKSRAMELAKLI-ENEDGVAAAVDAFHRH 607 (646)
Q Consensus 562 ~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l-~~~~G~~~Av~~ie~~ 607 (646)
+.+.++++|..++ +++.++.+.+-+... .+.-..+..++.+.+.
T Consensus 323 --~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~ 368 (372)
T cd03792 323 --TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYL 368 (372)
T ss_pred --CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 4678888999998 888777766665553 3334555555555444
No 84
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.49 E-value=2.6e-05 Score=93.11 Aligned_cols=162 Identities=9% Similarity=0.099 Sum_probs=97.5
Q ss_pred hHHHhHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcC-----CeEEEEecCCC-CCC-----------C------CC
Q 006412 434 NFVQWIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTG-----QRGIIDRGWGD-LGK-----------I------TE 490 (646)
Q Consensus 434 ~l~~wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g-----~r~Iv~~G~~~-~~~-----------l------~~ 490 (646)
.+..|+.....++++..|.+ .+++-...+++|+.... ..+.+..|.++ ... + ..
T Consensus 469 ~l~r~~~~pdkpvIL~VGRL---~p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lg 545 (1050)
T TIGR02468 469 EIMRFFTNPRKPMILALARP---DPKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYD 545 (1050)
T ss_pred HHHhhcccCCCcEEEEEcCC---ccccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhC
Confidence 45667655444566666776 34444455677776532 12322233321 110 0 12
Q ss_pred CCCcEEEeccCCcccc---cccc----cEEEEcC---c-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQC----SAVVHHG---G-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIP 559 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a----~~vI~HG---G-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~ 559 (646)
+.++|.+.+++++.++ +..+ |+||.-. | ..+++||+++|+|+|+-...+ ....++....|. .++
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGl-LVd 620 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGL-LVD 620 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEE-EEC
Confidence 4578999999998876 5555 6888742 2 368999999999999986543 223344434565 333
Q ss_pred CCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHH
Q 006412 560 ISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAFH 605 (646)
Q Consensus 560 ~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie 605 (646)
..+++.|+++|..++ |++.++++.+-+......-..+..++.+.
T Consensus 621 --P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl 665 (1050)
T TIGR02468 621 --PHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYL 665 (1050)
T ss_pred --CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 467899999999999 88766666555443333334444444333
No 85
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.48 E-value=5.9e-06 Score=87.05 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=87.9
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCC----CC---CCCcEEEeccCCcccc---cccccEEE
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKI----TE---VPDNIFLLEDCPHDWL---FPQCSAVV 514 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l----~~---~p~nV~i~~~vPq~~L---l~~a~~vI 514 (646)
.+.+..|.+. +.+-.+.++++++..+.++++.......... .. +.++|.+.+++++.++ ++.+|++|
T Consensus 172 ~~i~~~Gr~~---~~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v 248 (335)
T cd03802 172 DYLLFLGRIS---PEKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALL 248 (335)
T ss_pred CEEEEEEeec---cccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEE
Confidence 3444556662 2222345678888888887766433221111 11 3589999999998765 88999998
Q ss_pred Ec----Cc-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHH
Q 006412 515 HH----GG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPEVKSRAMELAK 589 (646)
Q Consensus 515 ~H----GG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~~r~~A~~la~ 589 (646)
.- -| ..++.||+++|+|+|+-...+ ....++....|. .++. .++++++|..+++.. ++++++.+
T Consensus 249 ~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~-l~~~----~~~l~~~l~~l~~~~-~~~~~~~~- 317 (335)
T cd03802 249 FPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGF-LVDS----VEELAAAVARADRLD-RAACRRRA- 317 (335)
T ss_pred eCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEE-EeCC----HHHHHHHHHHHhccH-HHHHHHHH-
Confidence 52 23 358999999999999876532 233444434665 3332 999999999886321 23333322
Q ss_pred HhhcCCcHHHHHHHHHH
Q 006412 590 LIENEDGVAAAVDAFHR 606 (646)
Q Consensus 590 ~l~~~~G~~~Av~~ie~ 606 (646)
.+.-..+..++.+.+
T Consensus 318 --~~~~s~~~~~~~~~~ 332 (335)
T cd03802 318 --ERRFSAARMVDDYLA 332 (335)
T ss_pred --HHhCCHHHHHHHHHH
Confidence 233344555554444
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.45 E-value=1.7e-05 Score=87.97 Aligned_cols=148 Identities=16% Similarity=0.065 Sum_probs=88.7
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHh-----cCCeEEEEecCCC-CCCCC----CCCCcE-EEeccCCcccccccccEEE
Q 006412 446 IYIGFGSMPLEDPKKTTEIILEALRD-----TGQRGIIDRGWGD-LGKIT----EVPDNI-FLLEDCPHDWLFPQCSAVV 514 (646)
Q Consensus 446 VyVsfGS~~~~~p~~l~~~i~~Al~~-----~g~r~Iv~~G~~~-~~~l~----~~p~nV-~i~~~vPq~~Ll~~a~~vI 514 (646)
+.+..|-+. .++-++.+++|++. .+.++++. |.+. .+.++ +++-++ ++.++...+.++..+|+||
T Consensus 230 ~~l~vGRL~---~eK~~~~Li~a~~~l~~~~~~~~l~iv-GdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv 305 (462)
T PLN02846 230 GAYYIGKMV---WSKGYKELLKLLHKHQKELSGLEVDLY-GSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFL 305 (462)
T ss_pred EEEEEecCc---ccCCHHHHHHHHHHHHhhCCCeEEEEE-CCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEE
Confidence 344456653 34444555666653 23444444 4442 22221 122122 3556666666899999999
Q ss_pred Ec----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHH
Q 006412 515 HH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAK 589 (646)
Q Consensus 515 ~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~ 589 (646)
.- +=..+++||+++|+|+|+.-..+. ..+..-+.|. .. -+.+++.+++..+| ++.. .. +.
T Consensus 306 ~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~~ng~-~~----~~~~~~a~ai~~~l~~~~~-~~----~~ 370 (462)
T PLN02846 306 NPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQFPNCR-TY----DDGKGFVRATLKALAEEPA-PL----TD 370 (462)
T ss_pred ECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecCCceE-ec----CCHHHHHHHHHHHHccCch-hH----HH
Confidence 87 445899999999999999864432 3444444443 22 36889999999998 3321 11 11
Q ss_pred HhhcCCcHHHHHHHHHHhcCCCC
Q 006412 590 LIENEDGVAAAVDAFHRHLPDEI 612 (646)
Q Consensus 590 ~l~~~~G~~~Av~~ie~~L~~~~ 612 (646)
..+..-..+++++.+.+++....
T Consensus 371 ~a~~~~SWe~~~~~l~~~~~~~~ 393 (462)
T PLN02846 371 AQRHELSWEAATERFLRVADLDL 393 (462)
T ss_pred HHHHhCCHHHHHHHHHHHhccCC
Confidence 12236678899999999886665
No 87
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.45 E-value=2.6e-05 Score=83.42 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=75.9
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEcC----------chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHHG----------GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAP 557 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~HG----------G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~ 557 (646)
+.++|.+.+++|++++ +..+|++|... -.+++.||+++|+|+|+-+..+ ++..+...+.|. .
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~-~ 317 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGL-L 317 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeE-E
Confidence 4688999999998776 89999998532 3579999999999999877643 555666667775 3
Q ss_pred cCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHH-hhcCCcHHHHHHHH
Q 006412 558 IPISQLTVENLSNAVRFML-QPEVKSRAMELAKL-IENEDGVAAAVDAF 604 (646)
Q Consensus 558 i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~-l~~~~G~~~Av~~i 604 (646)
++ ..+.++++++|.+++ +++.++++.+-+.. +.+.-..+..++.+
T Consensus 318 ~~--~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l 364 (367)
T cd05844 318 VP--EGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKL 364 (367)
T ss_pred EC--CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 43 457899999999999 78766555544433 22333444444444
No 88
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.43 E-value=3.4e-05 Score=80.29 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=81.2
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCCCC------CCCCCcEEEeccCCcc-cccccc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLGKI------TEVPDNIFLLEDCPHD-WLFPQC 510 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~~l------~~~p~nV~i~~~vPq~-~Ll~~a 510 (646)
.+.+++..|++. +.+-.+.++++++.. +.++++..+....... ....++|.+.++.+.. .++..+
T Consensus 188 ~~~~i~~~g~~~---~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 264 (353)
T cd03811 188 DGPVILAVGRLS---PQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAA 264 (353)
T ss_pred CceEEEEEecch---hhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhC
Confidence 446677778764 222234445555543 3555554322211111 1246789999986542 348999
Q ss_pred cEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHH---HHHHHHhh-CHHHHH
Q 006412 511 SAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENL---SNAVRFML-QPEVKS 582 (646)
Q Consensus 511 ~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L---~~aI~~lL-dp~~r~ 582 (646)
|++|.- |..+++.||+++|+|+|+-... .....++..+.|. .+ ..-+.+.+ .+++..++ +++.+.
T Consensus 265 d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~-~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ 337 (353)
T cd03811 265 DLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGL-LV--PVGDEAALAAAALALLDLLLDPELRE 337 (353)
T ss_pred CEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceE-EE--CCCCHHHHHHHHHHHHhccCChHHHH
Confidence 999953 3357899999999999985443 5566677777785 33 34566777 55666666 666555
Q ss_pred HHHH
Q 006412 583 RAME 586 (646)
Q Consensus 583 ~A~~ 586 (646)
++++
T Consensus 338 ~~~~ 341 (353)
T cd03811 338 RLAA 341 (353)
T ss_pred HHHH
Confidence 5444
No 89
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.36 E-value=0.00035 Score=75.61 Aligned_cols=155 Identities=15% Similarity=0.159 Sum_probs=91.9
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc--CCeEEEEecCCCCCC----C----CCC---CCcEEEe-ccCCcccc---
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT--GQRGIIDRGWGDLGK----I----TEV---PDNIFLL-EDCPHDWL--- 506 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~--g~r~Iv~~G~~~~~~----l----~~~---p~nV~i~-~~vPq~~L--- 506 (646)
.++++..|.+. +.+-.+.+++|++.. +.++++..+..+... + ..+ .+++.+. +++++.++
T Consensus 201 ~~~i~~~Grl~---~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 277 (388)
T TIGR02149 201 RPYILFVGRIT---RQKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVEL 277 (388)
T ss_pred ceEEEEEcccc---cccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHH
Confidence 34566667763 233345556777654 455555543322111 1 111 2346654 57887766
Q ss_pred cccccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCC----HHHHHHHHHHhh-C
Q 006412 507 FPQCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLT----VENLSNAVRFML-Q 577 (646)
Q Consensus 507 l~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt----~e~L~~aI~~lL-d 577 (646)
+..+|++|+- |...+++||+++|+|+|+-... .....++..+.|. .++..+.+ .+.|.++|.+++ |
T Consensus 278 ~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~-~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 278 LSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGF-LVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred HHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceE-EcCCCCCcccchHHHHHHHHHHHHhC
Confidence 8999999974 2235779999999999987543 3555666666675 45443332 288999999998 8
Q ss_pred HHHHHHHHHHHHH-hhcCCcHHHHHHHHHH
Q 006412 578 PEVKSRAMELAKL-IENEDGVAAAVDAFHR 606 (646)
Q Consensus 578 p~~r~~A~~la~~-l~~~~G~~~Av~~ie~ 606 (646)
++.++.+.+-+.. ..+.-..+..++.+.+
T Consensus 353 ~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 382 (388)
T TIGR02149 353 PELAKKMGIAGRKRAEEEFSWGSIAKKTVE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8776665555443 2233344444444433
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.27 E-value=0.00017 Score=78.34 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=56.5
Q ss_pred CcEEEec-cCCcccc---cccccEEEE-c-----Cc-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCC
Q 006412 493 DNIFLLE-DCPHDWL---FPQCSAVVH-H-----GG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPIS 561 (646)
Q Consensus 493 ~nV~i~~-~vPq~~L---l~~a~~vI~-H-----GG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~ 561 (646)
+|+.+.+ |+|++++ +..+|++|. + -| -+++.||+++|+|+|+....+ ....++..+.|. .++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~eiv~~g~~G~-lv~-- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IGELVKDGKNGL-LFS-- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC----hHHHccCCCCeE-EEC--
Confidence 4577765 7998877 899999984 1 12 358999999999999875432 566777777886 443
Q ss_pred CCCHHHHHHHHHHhh
Q 006412 562 QLTVENLSNAVRFML 576 (646)
Q Consensus 562 ~lt~e~L~~aI~~lL 576 (646)
++++|+++|.++|
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 4899999998775
No 91
>PLN00142 sucrose synthase
Probab=98.23 E-value=0.0001 Score=86.24 Aligned_cols=158 Identities=12% Similarity=0.029 Sum_probs=93.5
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCC------CC------C------CCCCCcEEEecc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDL------GK------I------TEVPDNIFLLED 500 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~------~~------l------~~~p~nV~i~~~ 500 (646)
.+++++.|-+. +.+-...+++|+++. ..++++..|..+. +. + ..+.++|.+++.
T Consensus 573 kpvIl~VGRL~---~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~ 649 (815)
T PLN00142 573 KPIIFSMARLD---RVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAA 649 (815)
T ss_pred CcEEEEEecCc---ccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCC
Confidence 45667777763 333334456666532 3566666543110 00 1 124577887764
Q ss_pred CC----cccccc----cccEEEEc---Cch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Q 006412 501 CP----HDWLFP----QCSAVVHH---GGA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENL 568 (646)
Q Consensus 501 vP----q~~Ll~----~a~~vI~H---GG~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L 568 (646)
.. ..+++. .+|+||.- -|. .++.||+++|+|+|+-...+ ....|+.-..|. .++ .-+++++
T Consensus 650 ~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~-LV~--P~D~eaL 722 (815)
T PLN00142 650 QTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGF-HID--PYHGDEA 722 (815)
T ss_pred cCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEE-EeC--CCCHHHH
Confidence 33 234432 46888864 333 48999999999999865443 444555555675 444 3567888
Q ss_pred HHHHHH----hh-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhcCCC
Q 006412 569 SNAVRF----ML-QPEVKSRAMELAKL-IENEDGVAAAVDAFHRHLPDE 611 (646)
Q Consensus 569 ~~aI~~----lL-dp~~r~~A~~la~~-l~~~~G~~~Av~~ie~~L~~~ 611 (646)
+++|.. ++ |++.++++.+-+.. +.+.-..+..++.+.++...-
T Consensus 723 A~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~~~ 771 (815)
T PLN00142 723 ANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGGVY 771 (815)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhc
Confidence 888764 45 78887777666533 334446677777777765433
No 92
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.22 E-value=9.4e-05 Score=79.97 Aligned_cols=181 Identities=19% Similarity=0.178 Sum_probs=107.0
Q ss_pred CCCcEEEeCceeccCCCCCCCchhHHH-hHhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHh-----cCCeEEEEecCCC
Q 006412 411 WGSLVAVVGYCLLNLGSKYQPQENFVQ-WIQRGPEPIYIGFGSMPLEDPKKTTEIILEALRD-----TGQRGIIDRGWGD 484 (646)
Q Consensus 411 ~~p~v~~vG~~~~~~~~~~~~~~~l~~-wL~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~-----~g~r~Iv~~G~~~ 484 (646)
++-.+.+||..+.+.-..........+ +++.+.++|-+--||-.. .-..++..++++++. .+.++++......
T Consensus 151 ~g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~-EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~ 229 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKS-EIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV 229 (373)
T ss_pred cCCCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHH-HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH
Confidence 466789999887664333333333333 357778899999999732 334555556666543 2456676643322
Q ss_pred CCC-C----CCCCCcEEEec-cCCcccccccccEEEEcCchhHHHHHHHhCCCeeecCC-CCChHHHHHHHHHcC-C---
Q 006412 485 LGK-I----TEVPDNIFLLE-DCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPF-FGDQFFWGDRVQQKG-L--- 553 (646)
Q Consensus 485 ~~~-l----~~~p~nV~i~~-~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~-~~DQ~~nA~~ve~~G-~--- 553 (646)
... + .....++.+.- .-.-.+++..||+.+.-.|- .|+|+..+|+|||++=- ..=.++.|+++.+.. +
T Consensus 230 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~ 308 (373)
T PF02684_consen 230 HEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLP 308 (373)
T ss_pred HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeech
Confidence 111 0 11122222221 11223458899999998886 78999999999999722 223455666654321 1
Q ss_pred ----CCC---CcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhc
Q 006412 554 ----GPA---PIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIEN 593 (646)
Q Consensus 554 ----G~~---~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~ 593 (646)
|-. .+-.++.|++.|.+++..+| |++.++......+.+.+
T Consensus 309 Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 309 NIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQ 356 (373)
T ss_pred hhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 111 12246789999999999999 77665555544444433
No 93
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.20 E-value=6.4e-06 Score=75.74 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCh--HHHHHHHHHHHHhcCC-eEEEEecCCCCCCC---C--CCCCcEEE--eccCCc-ccccccccE
Q 006412 444 EPIYIGFGSMPLEDP--KKTTEIILEALRDTGQ-RGIIDRGWGDLGKI---T--EVPDNIFL--LEDCPH-DWLFPQCSA 512 (646)
Q Consensus 444 pvVyVsfGS~~~~~p--~~l~~~i~~Al~~~g~-r~Iv~~G~~~~~~l---~--~~p~nV~i--~~~vPq-~~Ll~~a~~ 512 (646)
..+||+-||...++- ..+.+...+.+.+.|. +.|+.-|.+..... . ...+...+ .+|-|. .+..+.+|+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 479999999742211 1122334566777775 45666665532111 1 11233333 446675 445788999
Q ss_pred EEEcCchhHHHHHHHhCCCeeecCC----CCChHHHHHHHHHcCCCC
Q 006412 513 VVHHGGAGTTATGLKAGCPTTVVPF----FGDQFFWGDRVQQKGLGP 555 (646)
Q Consensus 513 vI~HGG~gTt~EaL~~GvP~vivP~----~~DQ~~nA~~ve~~G~G~ 555 (646)
||.|+|+||++|.|..|+|.|+++- -..|...|..+++.|-=.
T Consensus 84 VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~ 130 (170)
T KOG3349|consen 84 VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLY 130 (170)
T ss_pred EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEE
Confidence 9999999999999999999999984 367999999999888654
No 94
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.17 E-value=0.00031 Score=82.23 Aligned_cols=156 Identities=14% Similarity=0.050 Sum_probs=93.2
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCC------CC------CC------CCCCCcEEEecc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGD------LG------KI------TEVPDNIFLLED 500 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~------~~------~l------~~~p~nV~i~~~ 500 (646)
.++.++.|-+. +.+-...+++|+.+. ..++++..|... .+ .+ ..+.++|.+.++
T Consensus 550 kpiIl~VGRL~---~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~ 626 (784)
T TIGR02470 550 KPIIFSMARLD---RVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGA 626 (784)
T ss_pred CcEEEEEeCCC---ccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccC
Confidence 35566667663 333345556766542 355665554321 01 00 124578999987
Q ss_pred C-Cccc---ccc----cccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Q 006412 501 C-PHDW---LFP----QCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENL 568 (646)
Q Consensus 501 v-Pq~~---Ll~----~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L 568 (646)
. +... ++. .+|+||.- +-..|++||+++|+|+|+--..+ ....|+.-.-|. .++ .-+++++
T Consensus 627 ~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGf-LVd--p~D~eaL 699 (784)
T TIGR02470 627 QLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGF-HID--PYHGEEA 699 (784)
T ss_pred cCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEE-EeC--CCCHHHH
Confidence 5 4433 332 34688853 22369999999999999865443 445565555575 343 4578889
Q ss_pred HHHHHHh----h-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhcC
Q 006412 569 SNAVRFM----L-QPEVKSRAMELAKL-IENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 569 ~~aI~~l----L-dp~~r~~A~~la~~-l~~~~G~~~Av~~ie~~L~ 609 (646)
+++|.++ + |++.++.+.+-+.. +.+.-..+..++.+.++..
T Consensus 700 A~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~ 746 (784)
T TIGR02470 700 AEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAG 746 (784)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9998765 3 78777776665543 3344466666666666653
No 95
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=0.0028 Score=68.33 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=75.1
Q ss_pred CcEEEeccCCcc-cccccccEE------EEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCH
Q 006412 493 DNIFLLEDCPHD-WLFPQCSAV------VHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTV 565 (646)
Q Consensus 493 ~nV~i~~~vPq~-~Ll~~a~~v------I~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~ 565 (646)
.+|.+.+-+--. .++.-+|+. +-+||+| .+|.+++|+|+|.=|+...|...++++.+.|+|+ .++ + +
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~-~v~--~--~ 373 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGL-QVE--D--A 373 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeE-EEC--C--H
Confidence 366666543222 225555554 3488987 7899999999999999999999999999999997 332 2 7
Q ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHhhcC-Cc-HHHHHHHHH
Q 006412 566 ENLSNAVRFML-QPEVKSRAMELAKLIENE-DG-VAAAVDAFH 605 (646)
Q Consensus 566 e~L~~aI~~lL-dp~~r~~A~~la~~l~~~-~G-~~~Av~~ie 605 (646)
+.|.+++..++ |++.++++.+-+..+-.+ .| .++..+.+.
T Consensus 374 ~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~~l~ 416 (419)
T COG1519 374 DLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLEALK 416 (419)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 78888888888 788777776665555333 23 344444443
No 96
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.13 E-value=0.00045 Score=78.16 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=107.9
Q ss_pred CCcEEEeCceeccCCCCCCCchhHHHhH--hcCCCcEEEEcCCCCCCChHHHHHHHHHHHH--h--cCCeEEEEecCCCC
Q 006412 412 GSLVAVVGYCLLNLGSKYQPQENFVQWI--QRGPEPIYIGFGSMPLEDPKKTTEIILEALR--D--TGQRGIIDRGWGDL 485 (646)
Q Consensus 412 ~p~v~~vG~~~~~~~~~~~~~~~l~~wL--~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~--~--~g~r~Iv~~G~~~~ 485 (646)
+-.+.+||..+.+.-+.....++..+-+ +++.++|-+--||-. ..-+.+...+++|++ . ...++++.......
T Consensus 380 gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~-~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~ 458 (608)
T PRK01021 380 PLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRR-GDILRNLTIQVQAFLASSLASTHQLLVSSANPKY 458 (608)
T ss_pred CCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHHHHHhccCeEEEEecCchhh
Confidence 5678899987766422222233333322 345578889999973 234556667777776 3 34567665332210
Q ss_pred -CCCC----CCC-CcEEEeccCCcccccccccEEEEcCchhHHHHHHHhCCCeeecC-CCCChHHHHHHHHH--------
Q 006412 486 -GKIT----EVP-DNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVP-FFGDQFFWGDRVQQ-------- 550 (646)
Q Consensus 486 -~~l~----~~p-~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP-~~~DQ~~nA~~ve~-------- 550 (646)
+... ..+ -.+.++.--...+++..||+.+.-.|. .|+|+..+|+|||++= ...=-+..|+++.+
T Consensus 459 ~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsL 537 (608)
T PRK01021 459 DHLILEVLQQEGCLHSHIVPSQFRYELMRECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSL 537 (608)
T ss_pred HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeeh
Confidence 1111 111 122333210113668999999999997 6899999999999962 22223455666555
Q ss_pred ------cCCCCCCcC-CCCCCHHHHHHHHHHhh-CHHHHH----HHHHHHHHhhcC-CcHHHHHHHHHH
Q 006412 551 ------KGLGPAPIP-ISQLTVENLSNAVRFML-QPEVKS----RAMELAKLIENE-DGVAAAVDAFHR 606 (646)
Q Consensus 551 ------~G~G~~~i~-~~~lt~e~L~~aI~~lL-dp~~r~----~A~~la~~l~~~-~G~~~Av~~ie~ 606 (646)
..+-++.+. .++.|+++|++++ ++| |++.++ ..+++.+.+.+. -..+.+...+.+
T Consensus 538 pNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~~~~~~~~~~~~~ 605 (608)
T PRK01021 538 PNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMNESASTMKECLSLIFE 605 (608)
T ss_pred hHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 222232232 3678999999997 666 765444 444444444211 123445444443
No 97
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.08 E-value=0.00061 Score=76.50 Aligned_cols=151 Identities=16% Similarity=0.208 Sum_probs=87.2
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCC--C-CCC----CCCCCcEEEeccCCccc---ccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGD--L-GKI----TEVPDNIFLLEDCPHDW---LFPQC 510 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~--~-~~l----~~~p~nV~i~~~vPq~~---Ll~~a 510 (646)
.++++..|.+.. .+-.+.+++|+.. .+.++++.. .++ . ..+ ...+.++.+....+... ++..+
T Consensus 291 ~~~i~~vGrl~~---~Kg~~~li~a~~~l~~~~~~lvi~G-~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 366 (473)
T TIGR02095 291 VPLFGVISRLTQ---QKGVDLLLAALPELLELGGQLVVLG-TGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGA 366 (473)
T ss_pred CCEEEEEecCcc---ccChHHHHHHHHHHHHcCcEEEEEC-CCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhC
Confidence 456666777743 2223444555543 456766653 332 1 111 22456787776666554 47999
Q ss_pred cEEEEcC---ch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHc------CCCCCCcCCCCCCHHHHHHHHHHhh----
Q 006412 511 SAVVHHG---GA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQK------GLGPAPIPISQLTVENLSNAVRFML---- 576 (646)
Q Consensus 511 ~~vI~HG---G~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~------G~G~~~i~~~~lt~e~L~~aI~~lL---- 576 (646)
|++|.-. |. .+.+||+++|+|.|+-...+ ....+... +.|. .+ ...++++|+++|.+++
T Consensus 367 Dv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~-l~--~~~d~~~la~~i~~~l~~~~ 439 (473)
T TIGR02095 367 DFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGF-LF--EEYDPGALLAALSRALRLYR 439 (473)
T ss_pred CEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceE-Ee--CCCCHHHHHHHHHHHHHHHh
Confidence 9999642 33 47899999999999865432 12222222 5664 33 4567899999998876
Q ss_pred -CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 577 -QPEVKSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 577 -dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
+++.++++.+-+ +.+.-..++.++..+++
T Consensus 440 ~~~~~~~~~~~~~--~~~~fsw~~~a~~~~~~ 469 (473)
T TIGR02095 440 QDPSLWEALQKNA--MSQDFSWDKSAKQYVEL 469 (473)
T ss_pred cCHHHHHHHHHHH--hccCCCcHHHHHHHHHH
Confidence 344444443322 23344566666665554
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.07 E-value=0.002 Score=75.30 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=72.8
Q ss_pred CCCcEEEeccCCccc-ccccccEEEE---cCc-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCH
Q 006412 491 VPDNIFLLEDCPHDW-LFPQCSAVVH---HGG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTV 565 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~-Ll~~a~~vI~---HGG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~ 565 (646)
+.++|++.+|.+... ++..+|+||. +.| .++++||+++|+|+|+....+ ....++.-..|. .++..+.+.
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~Gl-Lv~~~d~~~ 646 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGL-TLPADTVTA 646 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEE-EeCCCCCCh
Confidence 468899999976432 3899999986 444 589999999999999976532 445566555676 566667777
Q ss_pred HHHHHHHHHhh-----CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 566 ENLSNAVRFML-----QPEVKSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 566 e~L~~aI~~lL-----dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
+++++++..++ ++++++++++.+. +.-..+..++.++++
T Consensus 647 ~~La~aL~~ll~~l~~~~~l~~~ar~~a~---~~FS~~~~~~~~~~l 690 (694)
T PRK15179 647 PDVAEALARIHDMCAADPGIARKAADWAS---ARFSLNQMIASTVRC 690 (694)
T ss_pred HHHHHHHHHHHhChhccHHHHHHHHHHHH---HhCCHHHHHHHHHHH
Confidence 77777776554 4666666555442 233444555554443
No 99
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.03 E-value=0.0012 Score=72.10 Aligned_cols=109 Identities=9% Similarity=0.071 Sum_probs=77.9
Q ss_pred CCcEEEeccCCccc-ccccccEEEEc----Cch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCH
Q 006412 492 PDNIFLLEDCPHDW-LFPQCSAVVHH----GGA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTV 565 (646)
Q Consensus 492 p~nV~i~~~vPq~~-Ll~~a~~vI~H----GG~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~ 565 (646)
.++|.+.++++... ++..+|++|.- .|. +.+.||+++|+|+|+-+...+. ..+..|.|. .++ -++
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~~~g~-lv~---~~~ 349 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALPGAEL-LVA---ADP 349 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccccCCcce-EeC---CCH
Confidence 46899999998432 28999999842 344 4699999999999998753321 112345675 332 579
Q ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHhcC
Q 006412 566 ENLSNAVRFML-QPEVKSRAMELAKLI-ENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 566 e~L~~aI~~lL-dp~~r~~A~~la~~l-~~~~G~~~Av~~ie~~L~ 609 (646)
++++++|.+++ |++.++++.+-+... .+.-..++.++.+++++.
T Consensus 350 ~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 99999999999 888777766665544 345577888888888764
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.0017 Score=69.48 Aligned_cols=342 Identities=13% Similarity=0.106 Sum_probs=185.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCC-CEEEEEeCCCch--hh----hhhCCceEEEcCCChHHHHHHHhhcCCCCC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFG-HRVRLATHANFR--TF----VRSAGVDFFPLGGDPRVLAGYMARNKGLIP 262 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rG-H~Vt~~t~~~~~--~~----v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~ 262 (646)
++| +++.+|++-.+.-+-.+.++|.+.+ .+..++.+..++ ++ .+..++.. .+. ....+. ..+
T Consensus 3 ~~K-v~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~----pdy--~L~i~~-~~~--- 71 (383)
T COG0381 3 MLK-VLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRK----PDY--DLNIMK-PGQ--- 71 (383)
T ss_pred ceE-EEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCC----CCc--chhccc-cCC---
Confidence 344 4556799999999999999999997 777776555444 22 22333332 111 011110 000
Q ss_pred CCcch-HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEE--C-CCccchHHHHHHhCCCEEEEEccCCCCCCCCCC
Q 006412 263 SGPGE-ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIA--N-PPAYGHAHVAEALGVPIHIFFTMPWTPTYEFPH 338 (646)
Q Consensus 263 ~~~~~-i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIa--d-~~~~~~~~vA~~lGIP~v~~~t~p~~~~~~~P~ 338 (646)
..++ .+.....+.+++. ..+||+|+. | ..++++..+|-+++||+.-+-..--+....
T Consensus 72 -tl~~~t~~~i~~~~~vl~---------------~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~--- 132 (383)
T COG0381 72 -TLGEITGNIIEGLSKVLE---------------EEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLY--- 132 (383)
T ss_pred -CHHHHHHHHHHHHHHHHH---------------hhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCCC---
Confidence 0001 1112233333333 258999875 3 455666889999999996654332221111
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCCcccccccCcccCcccccccCCCCCCCCCCCCCcEEEe
Q 006412 339 PLARVPQSAGYWLSYIIVDLLIWWGIRSYINDFRKRKLKLPPIAYFSTYHGSISHLPTAYMWSPHLVPKPSDWGSLVAVV 418 (646)
Q Consensus 339 pl~~ip~~~~~~ls~~~~~~~~~~~~~~~in~~r~~~lgL~p~~~~~~~~~~~~~ip~~~~~sp~l~p~p~d~~p~v~~v 418 (646)
+|......+.-.+.++.+-. .....+.+.+ .|. | +.+|.++
T Consensus 133 ----~PEE~NR~l~~~~S~~hfap-te~ar~nLl~--EG~---------------------------~-----~~~Ifvt 173 (383)
T COG0381 133 ----FPEEINRRLTSHLSDLHFAP-TEIARKNLLR--EGV---------------------------P-----EKRIFVT 173 (383)
T ss_pred ----CcHHHHHHHHHHhhhhhcCC-hHHHHHHHHH--cCC---------------------------C-----ccceEEe
Confidence 22211111111111111100 0000011111 111 1 2357777
Q ss_pred CceeccCC----CCCCCchhHHH--hHhcCCCcEEEEcCCCCCCC--hHHHHHHHHHHHHhc-CCeEEEEecCCC-CCCC
Q 006412 419 GYCLLNLG----SKYQPQENFVQ--WIQRGPEPIYIGFGSMPLED--PKKTTEIILEALRDT-GQRGIIDRGWGD-LGKI 488 (646)
Q Consensus 419 G~~~~~~~----~~~~~~~~l~~--wL~~~~pvVyVsfGS~~~~~--p~~l~~~i~~Al~~~-g~r~Iv~~G~~~-~~~l 488 (646)
|....+.- .....+..... +.++++..|.|++=-....+ -+++.+.+.+.+++. ...+|...-... ...+
T Consensus 174 Gnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~ 253 (383)
T COG0381 174 GNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVREL 253 (383)
T ss_pred CChHHHHHHHHHhhhccchhhHHhhhccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHH
Confidence 76543210 00011111111 33445568888764433222 234444444555555 455665533221 1111
Q ss_pred --CCC--CCcEEEec---cCCcccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCC
Q 006412 489 --TEV--PDNIFLLE---DCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPIS 561 (646)
Q Consensus 489 --~~~--p~nV~i~~---~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~ 561 (646)
..+ .++|++.+ |.+..+++.+|-+++|-.|. -.-||...|+|.+++=...+++. .+ ++|.-+ .-
T Consensus 254 ~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~agt~~----lv 324 (383)
T COG0381 254 VLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-EAGTNI----LV 324 (383)
T ss_pred HHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-ecCceE----Ee
Confidence 111 35688875 55666779999999999985 68899999999999988888887 22 223222 12
Q ss_pred CCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhcC
Q 006412 562 QLTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 562 ~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~L~ 609 (646)
..+.+.+.+++..++ +++..++++....-..+....++.++.+.++..
T Consensus 325 g~~~~~i~~~~~~ll~~~~~~~~m~~~~npYgdg~as~rIv~~l~~~~~ 373 (383)
T COG0381 325 GTDEENILDAATELLEDEEFYERMSNAKNPYGDGNASERIVEILLNYFD 373 (383)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHhcccCCCcCcchHHHHHHHHHHHhh
Confidence 466799999999999 899999888877766666677888888887654
No 101
>PLN02949 transferase, transferring glycosyl groups
Probab=97.94 E-value=0.004 Score=69.79 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=87.3
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHh---------cCCeEEEEecCCCCC------CC------CCCCCcEEEeccCCc
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRD---------TGQRGIIDRGWGDLG------KI------TEVPDNIFLLEDCPH 503 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~---------~g~r~Iv~~G~~~~~------~l------~~~p~nV~i~~~vPq 503 (646)
.++++.|.+. +++-...+++|++. .+.++++..+....+ ++ ..+.++|.+.+++|+
T Consensus 269 ~~il~vGR~~---~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~ 345 (463)
T PLN02949 269 PYIISVAQFR---PEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSY 345 (463)
T ss_pred CEEEEEEeee---ccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCH
Confidence 4566667653 33334445555543 245666654432111 11 125689999999998
Q ss_pred ccc---cccccEEEE---cCch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHH--cC-CCCCCcCCCCCCHHHHHHHHH
Q 006412 504 DWL---FPQCSAVVH---HGGA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQ--KG-LGPAPIPISQLTVENLSNAVR 573 (646)
Q Consensus 504 ~~L---l~~a~~vI~---HGG~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~--~G-~G~~~i~~~~lt~e~L~~aI~ 573 (646)
.++ +.+++++|+ +-|. .++.||+++|+|.|+....+-- ...+.. .| .|. +. -++++++++|.
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~--l~---~~~~~la~ai~ 417 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGF--LA---TTVEEYADAIL 417 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccc--cC---CCHHHHHHHHH
Confidence 876 789999985 2233 3799999999999998654310 011111 12 353 21 27999999999
Q ss_pred Hhh-C-HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 574 FML-Q-PEVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 574 ~lL-d-p~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
+++ + ++.++.+.+-+.+..+.-..++.++.+++.+
T Consensus 418 ~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i 454 (463)
T PLN02949 418 EVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAI 454 (463)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 998 3 5544444333332222334444444444433
No 102
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.91 E-value=0.00015 Score=79.09 Aligned_cols=112 Identities=16% Similarity=0.228 Sum_probs=77.5
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEcC----ch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHHG----GA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQ 562 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~HG----G~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~ 562 (646)
+..++.+.+++|++++ ++.+|++|... |. .+++||+++|+|+|+....+ +...++....|. .+ ...
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~-~l-~~~ 328 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGY-HL-AEP 328 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceE-EE-eCC
Confidence 4578999999998776 89999999743 32 67899999999999876533 344555555664 12 234
Q ss_pred CCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 563 LTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 563 lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
.++++|+++|..++ |++.++.+++-.+...+.-..+..++.+++.+
T Consensus 329 ~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l 375 (380)
T PRK15484 329 MTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQI 375 (380)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 67999999999999 88754433333333444456666666666655
No 103
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.90 E-value=0.00033 Score=77.43 Aligned_cols=79 Identities=22% Similarity=0.163 Sum_probs=57.7
Q ss_pred CCCcEEEeccCCcccc---cccccEEEE-----cCchhHHHHHHHhCCCeeecCCCCChHHHHHHHH---HcCCCCCCcC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVH-----HGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQ---QKGLGPAPIP 559 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~-----HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve---~~G~G~~~i~ 559 (646)
+.++|.+.+++|+.++ +..++++|+ |-| .++.||+++|+|.|+.-..+. ....++ ....|. ..
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~-l~- 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGF-LA- 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceE-Ee-
Confidence 4689999999998876 899999886 333 488999999999998654331 112233 345675 22
Q ss_pred CCCCCHHHHHHHHHHhh-CH
Q 006412 560 ISQLTVENLSNAVRFML-QP 578 (646)
Q Consensus 560 ~~~lt~e~L~~aI~~lL-dp 578 (646)
-++++++++|.+++ ++
T Consensus 377 ---~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ---STAEEYAEAIEKILSLS 393 (419)
T ss_pred ---CCHHHHHHHHHHHHhCC
Confidence 28999999999998 44
No 104
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.90 E-value=0.00087 Score=72.81 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=85.7
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHh-cCCeEEEEecCCCCCCCCCC--CCcEEEeccCCcccc---cccccEEEEc
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRD-TGQRGIIDRGWGDLGKITEV--PDNIFLLEDCPHDWL---FPQCSAVVHH 516 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~-~g~r~Iv~~G~~~~~~l~~~--p~nV~i~~~vPq~~L---l~~a~~vI~H 516 (646)
++++++.+|++... .-.+.+.+..+. .+.++++............+ .+||++.+++|+.++ +..+|++|.-
T Consensus 204 ~~~~i~y~G~l~~~---~d~~ll~~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P 280 (373)
T cd04950 204 PRPVIGYYGAIAEW---LDLELLEALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILP 280 (373)
T ss_pred CCCEEEEEeccccc---cCHHHHHHHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecC
Confidence 34566666887532 122333333333 35666655332111111112 379999999999988 7889998752
Q ss_pred --------Cc-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CH-HHHHHHH
Q 006412 517 --------GG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QP-EVKSRAM 585 (646)
Q Consensus 517 --------GG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp-~~r~~A~ 585 (646)
++ -+.+.|++++|+|+|..++ ...++..+.+. +. .-+++++.++|..++ ++ ..+.+
T Consensus 281 ~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~~--~~--~~d~~~~~~ai~~~l~~~~~~~~~-- 347 (373)
T cd04950 281 FRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEVV--LI--ADDPEEFVAAIEKALLEDGPARER-- 347 (373)
T ss_pred CccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcEE--Ee--CCCHHHHHHHHHHHHhcCCchHHH--
Confidence 22 2469999999999998753 22333333232 22 237999999999976 32 22211
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhc
Q 006412 586 ELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 586 ~la~~l~~~~G~~~Av~~ie~~L 608 (646)
+..+ +.++...++.++.++..|
T Consensus 348 ~~~~-~~~~~sW~~~a~~~~~~l 369 (373)
T cd04950 348 RRLR-LAAQNSWDARAAEMLEAL 369 (373)
T ss_pred HHHH-HHHHCCHHHHHHHHHHHH
Confidence 1111 445566667666666544
No 105
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.90 E-value=9.7e-05 Score=79.55 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=85.1
Q ss_pred cCCCcEEEEcCCCCCCC-hH--HHHHHHHHHHHhc-CCeEEEEecCCCC------CCCCCCCCcEEEeccCCcccc---c
Q 006412 441 RGPEPIYIGFGSMPLED-PK--KTTEIILEALRDT-GQRGIIDRGWGDL------GKITEVPDNIFLLEDCPHDWL---F 507 (646)
Q Consensus 441 ~~~pvVyVsfGS~~~~~-p~--~l~~~i~~Al~~~-g~r~Iv~~G~~~~------~~l~~~p~nV~i~~~vPq~~L---l 507 (646)
..++.|+|++=.....+ ++ ..+..+++++.+. +.++|+.....+. +.+... +|+.+++.+++... +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHH
Confidence 44568888885544444 32 2222345666665 7778877542211 112334 59999988877654 8
Q ss_pred ccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHH
Q 006412 508 PQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAME 586 (646)
Q Consensus 508 ~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~ 586 (646)
.+|+++|+-.| |-..||.+.|+|+|.+=..++.+. ....|..+ + . ..+.++|.+++++++ +++...++..
T Consensus 257 ~~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe----~r~~~~nv--l-v-~~~~~~I~~ai~~~l~~~~~~~~~~~ 327 (346)
T PF02350_consen 257 KNADLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQE----GRERGSNV--L-V-GTDPEAIIQAIEKALSDKDFYRKLKN 327 (346)
T ss_dssp HHESEEEESSH-HHHHHGGGGT--EEECSSS-S-HH----HHHTTSEE--E-E-TSSHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred hcceEEEEcCc-cHHHHHHHhCCeEEEecCCCCCHH----HHhhcceE--E-e-CCCHHHHHHHHHHHHhChHHHHhhcc
Confidence 99999999999 555599999999999922222221 12234443 3 2 388999999999999 5455555544
Q ss_pred HHHHhhcCCcHHHHHHHH
Q 006412 587 LAKLIENEDGVAAAVDAF 604 (646)
Q Consensus 587 la~~l~~~~G~~~Av~~i 604 (646)
...-+.+.+..++.++.+
T Consensus 328 ~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 328 RPNPYGDGNASERIVEIL 345 (346)
T ss_dssp S--TT-SS-HHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHhh
Confidence 334444445556666654
No 106
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.87 E-value=0.0015 Score=69.74 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=116.5
Q ss_pred EEEeCceeccCCCCCCCchhHHHh--HhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhc-----CCeEEEEecCCCCCC
Q 006412 415 VAVVGYCLLNLGSKYQPQENFVQW--IQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDT-----GQRGIIDRGWGDLGK 487 (646)
Q Consensus 415 v~~vG~~~~~~~~~~~~~~~l~~w--L~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~~~ 487 (646)
..++|....+.-+.....+...+- ++.+++++.+--||-.. .-..+...+.+++.++ +.++++.+-......
T Consensus 158 ~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s-EI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~ 236 (381)
T COG0763 158 CTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRS-EIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRR 236 (381)
T ss_pred eEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHH-HHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHH
Confidence 678887765533333333444333 34567899999999743 3455666666666543 477887654332111
Q ss_pred C--CCC-----CCcEEEeccCCcccccccccEEEEcCchhHHHHHHHhCCCeeecCCC-CChHHHHHHHHHcC-------
Q 006412 488 I--TEV-----PDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFF-GDQFFWGDRVQQKG------- 552 (646)
Q Consensus 488 l--~~~-----p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~-~DQ~~nA~~ve~~G------- 552 (646)
. +.. ..+.++.+. --...|..||+.+.-+|- -++|+..+|+|||+.=-. .=-++.|++..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~-~~~~a~~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNI 314 (381)
T COG0763 237 IIEEALKWEVAGLSLILIDG-EKRKAFAAADAALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNI 314 (381)
T ss_pred HHHHHhhccccCceEEecCc-hHHHHHHHhhHHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHH
Confidence 1 000 112222221 111248899999999986 578999999999985211 11233444433221
Q ss_pred -----CCCCCcCCCCCCHHHHHHHHHHhh-CH----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhcC
Q 006412 553 -----LGPAPIPISQLTVENLSNAVRFML-QP----EVKSRAMELAKLIENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 553 -----~G~~~i~~~~lt~e~L~~aI~~lL-dp----~~r~~A~~la~~l~~~~G~~~Av~~ie~~L~ 609 (646)
+.++.+ .++.+++.|++++..++ |+ ++++.-+++...++.....+.|++.+.+.+.
T Consensus 315 i~~~~ivPEli-q~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 315 LAGREIVPELI-QEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred hcCCccchHHH-hhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 222112 26789999999999998 66 5777777788888666678888888877653
No 107
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.79 E-value=0.00089 Score=65.55 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCCcEEEeccCCcccc----cccccEEEEcCc----hhHHHHHHHhCCCeeecCCCC
Q 006412 491 VPDNIFLLEDCPHDWL----FPQCSAVVHHGG----AGTTATGLKAGCPTTVVPFFG 539 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L----l~~a~~vI~HGG----~gTt~EaL~~GvP~vivP~~~ 539 (646)
..+||.+.++++..+. +..+|++|+... .+++.||+++|+|+|+-+..+
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4578999998744332 455999999887 789999999999999987654
No 108
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.73 E-value=7e-05 Score=71.45 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=88.1
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHh------cCCeEEEEecCCCC-CCC------CCCCCcEEEeccCCcccc---
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRD------TGQRGIIDRGWGDL-GKI------TEVPDNIFLLEDCPHDWL--- 506 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~------~g~r~Iv~~G~~~~-~~l------~~~p~nV~i~~~vPq~~L--- 506 (646)
.+.+++..|.... .+-...+++++.. ..+.+++. |.... ..+ ..+.+++.+.++.++.++
T Consensus 14 ~~~~il~~g~~~~---~K~~~~li~a~~~l~~~~~~~~~l~i~-G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 89 (172)
T PF00534_consen 14 KKKIILFIGRLDP---EKGIDLLIEAFKKLKEKKNPNYKLVIV-GDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDEL 89 (172)
T ss_dssp TSEEEEEESESSG---GGTHHHHHHHHHHHHHHHHTTEEEEEE-SHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHH
T ss_pred CCeEEEEEecCcc---ccCHHHHHHHHHHHHhhcCCCeEEEEE-cccccccccccccccccccccccccccccccccccc
Confidence 4567777787632 2323334444442 33444444 42111 001 235689999999986655
Q ss_pred cccccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHH
Q 006412 507 FPQCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVK 581 (646)
Q Consensus 507 l~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r 581 (646)
+..++++|+. |...++.||+++|+|+|+- +...+...+...+.|. .++ ..+.++++++|.+++ +++.+
T Consensus 90 ~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~-~~~--~~~~~~l~~~i~~~l~~~~~~ 162 (172)
T PF00534_consen 90 YKSSDIFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGF-LFD--PNDIEELADAIEKLLNDPELR 162 (172)
T ss_dssp HHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEE-EES--TTSHHHHHHHHHHHHHHHHHH
T ss_pred cccceeccccccccccccccccccccccceeec----cccCCceeeccccceE-EeC--CCCHHHHHHHHHHHHCCHHHH
Confidence 8899999988 6678999999999999975 3555666666666775 444 339999999999999 77777
Q ss_pred HHHHHHHH
Q 006412 582 SRAMELAK 589 (646)
Q Consensus 582 ~~A~~la~ 589 (646)
+.+.+-++
T Consensus 163 ~~l~~~~~ 170 (172)
T PF00534_consen 163 QKLGKNAR 170 (172)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66665544
No 109
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.72 E-value=0.0015 Score=74.94 Aligned_cols=139 Identities=14% Similarity=0.043 Sum_probs=84.0
Q ss_pred ChHHHHHHHHHHHHhc-----CCeEEEEecCCCC-CCCC----CCCCcEEEeccCCccc-ccccccEEEEcC----chhH
Q 006412 457 DPKKTTEIILEALRDT-----GQRGIIDRGWGDL-GKIT----EVPDNIFLLEDCPHDW-LFPQCSAVVHHG----GAGT 521 (646)
Q Consensus 457 ~p~~l~~~i~~Al~~~-----g~r~Iv~~G~~~~-~~l~----~~p~nV~i~~~vPq~~-Ll~~a~~vI~HG----G~gT 521 (646)
.+++-+..+++|++.. +.++++. |.+.. +.+. .+.-+|.++++.++.. ++..+|+||.-. =..+
T Consensus 556 a~EKGld~LLeAla~L~~~~pnvrLvIV-GDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlV 634 (794)
T PLN02501 556 VWAKGYRELIDLLAKHKNELDGFNLDVF-GNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTA 634 (794)
T ss_pred cccCCHHHHHHHHHHHHhhCCCeEEEEE-cCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHH
Confidence 3444445566666532 4555554 44322 2221 1222477777776554 799999998742 2478
Q ss_pred HHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHH
Q 006412 522 TATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAA 600 (646)
Q Consensus 522 t~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~A 600 (646)
++||+++|+|+|+....+... +...+.|. + . -+.++++++|..+| ++..+..+.. ...-..+++
T Consensus 635 lLEAMA~GlPVVATd~pG~e~-----V~~g~nGl--l-~--~D~EafAeAI~~LLsd~~~rl~~~a-----~~~~SWeAa 699 (794)
T PLN02501 635 TAEALAMGKFVVCADHPSNEF-----FRSFPNCL--T-Y--KTSEDFVAKVKEALANEPQPLTPEQ-----RYNLSWEAA 699 (794)
T ss_pred HHHHHHcCCCEEEecCCCCce-----EeecCCeE--e-c--CCHHHHHHHHHHHHhCchhhhHHHH-----HhhCCHHHH
Confidence 999999999999987655322 22222232 1 2 46899999999999 6654433322 224567777
Q ss_pred HHHHHHhcCCC
Q 006412 601 VDAFHRHLPDE 611 (646)
Q Consensus 601 v~~ie~~L~~~ 611 (646)
++.++++-...
T Consensus 700 adrLle~~~~~ 710 (794)
T PLN02501 700 TQRFMEYSDLD 710 (794)
T ss_pred HHHHHHhhccc
Confidence 77777765443
No 110
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.69 E-value=0.0055 Score=68.75 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=83.5
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCCC---CCC----CCCCCcEEE-eccCCcc---ccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGDL---GKI----TEVPDNIFL-LEDCPHD---WLFPQ 509 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~~---~~l----~~~p~nV~i-~~~vPq~---~Ll~~ 509 (646)
.++++..|.+. +.+-.+.+++|+++ .+.++++.. .+.. ..+ .+.+.++.+ .++ +.. .++..
T Consensus 282 ~~~i~~vGRl~---~~KG~~~li~a~~~l~~~~~~lvivG-~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~ 356 (466)
T PRK00654 282 APLFAMVSRLT---EQKGLDLVLEALPELLEQGGQLVLLG-TGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAG 356 (466)
T ss_pred CcEEEEeeccc---cccChHHHHHHHHHHHhcCCEEEEEe-cCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhh
Confidence 45666667764 23333445555543 367777663 3221 111 234566654 455 433 34799
Q ss_pred ccEEEEc---Cch-hHHHHHHHhCCCeeecCCCC--ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh----CHH
Q 006412 510 CSAVVHH---GGA-GTTATGLKAGCPTTVVPFFG--DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML----QPE 579 (646)
Q Consensus 510 a~~vI~H---GG~-gTt~EaL~~GvP~vivP~~~--DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL----dp~ 579 (646)
+|++|.- -|. .+.+||+++|+|.|+-...+ |...++..-...+.|. .+ ..-++++|+++|.+++ +++
T Consensus 357 aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~-lv--~~~d~~~la~~i~~~l~~~~~~~ 433 (466)
T PRK00654 357 ADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGF-VF--DDFNAEDLLRALRRALELYRQPP 433 (466)
T ss_pred CCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceE-Ee--CCCCHHHHHHHHHHHHHHhcCHH
Confidence 9999964 343 48899999999999864432 2111110001225665 33 3567899999999876 344
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 580 VKSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 580 ~r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
.+.++.+-+ +...-..++.++..+++
T Consensus 434 ~~~~~~~~~--~~~~fsw~~~a~~~~~l 459 (466)
T PRK00654 434 LWRALQRQA--MAQDFSWDKSAEEYLEL 459 (466)
T ss_pred HHHHHHHHH--hccCCChHHHHHHHHHH
Confidence 333332222 22334555655555543
No 111
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00028 Score=63.96 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCChHHHHHH--HHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcc---cccccccEEEEcCchh
Q 006412 446 IYIGFGSMPLEDPKKTTEI--ILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHD---WLFPQCSAVVHHGGAG 520 (646)
Q Consensus 446 VyVsfGS~~~~~p~~l~~~--i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~---~Ll~~a~~vI~HGG~g 520 (646)
|||+-||... .-..++.. +.+-.+.-..++|+.-|.++... +.. ..+.+|.-.. .+...++++|+|+|.|
T Consensus 2 ifVTvGstf~-~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kp---vag-l~v~~F~~~~kiQsli~darIVISHaG~G 76 (161)
T COG5017 2 IFVTVGSTFY-PFNRLVLKIEVLELTELIQEELIVQYGNGDIKP---VAG-LRVYGFDKEEKIQSLIHDARIVISHAGEG 76 (161)
T ss_pred eEEEecCccc-hHHHHHhhHHHHHHHHHhhhheeeeecCCCccc---ccc-cEEEeechHHHHHHHhhcceEEEeccCcc
Confidence 7899999732 22222211 22222333457788877654322 222 4566654333 3467788999999999
Q ss_pred HHHHHHHhCCCeeecCCCC--------ChHHHHHHHHHcCCCC
Q 006412 521 TTATGLKAGCPTTVVPFFG--------DQFFWGDRVQQKGLGP 555 (646)
Q Consensus 521 Tt~EaL~~GvP~vivP~~~--------DQ~~nA~~ve~~G~G~ 555 (646)
|++.++..++|.|++|--. .|...|..+.+.+.=.
T Consensus 77 SIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv 119 (161)
T COG5017 77 SILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVV 119 (161)
T ss_pred hHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceE
Confidence 9999999999999999643 5888888888877654
No 112
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.60 E-value=0.00048 Score=75.89 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=77.0
Q ss_pred CCCcEEEeccCCcccc---cccccEEEEc---------Cch-hHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCC
Q 006412 491 VPDNIFLLEDCPHDWL---FPQCSAVVHH---------GGA-GTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAP 557 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~L---l~~a~~vI~H---------GG~-gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~ 557 (646)
+.++|.+.+|+|+.++ +..+|++|.- -|. .+++||+++|+|+|+-...+ ....++.-..|. .
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~-l 351 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGW-L 351 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceE-E
Confidence 4688999999999876 8999999963 243 67899999999999875433 334555555675 3
Q ss_pred cCCCCCCHHHHHHHHHHhh--CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhc
Q 006412 558 IPISQLTVENLSNAVRFML--QPEVKSRAMELAKL-IENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 558 i~~~~lt~e~L~~aI~~lL--dp~~r~~A~~la~~-l~~~~G~~~Av~~ie~~L 608 (646)
++ .-+.++|+++|..++ |++.++.+.+-++. ..+.-..+..++.+.+++
T Consensus 352 v~--~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 352 VP--ENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred eC--CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33 457999999999987 67655555554433 333445555555555544
No 113
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.58 E-value=0.00012 Score=78.20 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=89.5
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCC-CCCCCcEEEeccCCcccc---cccccEEEEc--Cc
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKI-TEVPDNIFLLEDCPHDWL---FPQCSAVVHH--GG 518 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l-~~~p~nV~i~~~vPq~~L---l~~a~~vI~H--GG 518 (646)
..++..|.+. +.+-.+.+++|++..+.++++..+....+.+ ....+||.+.+++|+.++ +..+|++|.- -|
T Consensus 196 ~~il~~G~~~---~~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~ 272 (351)
T cd03804 196 DYYLSVGRLV---PYKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEED 272 (351)
T ss_pred CEEEEEEcCc---cccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCC
Confidence 3445566663 2333566788888888777766432221111 135689999999998765 8899999953 22
Q ss_pred -hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CH-HHHHHHHHHHH
Q 006412 519 -AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QP-EVKSRAMELAK 589 (646)
Q Consensus 519 -~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp-~~r~~A~~la~ 589 (646)
..++.||+++|+|+|+....+ +...++..+.|. .++ .-+.++|+++|..++ ++ ..++++++.++
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~-~~~--~~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGI-LFE--EQTVESLAAAVERFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEE-EeC--CCCHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 246789999999999986543 334455556675 333 457889999999998 66 45555554443
No 114
>PLN02316 synthase/transferase
Probab=97.51 E-value=0.031 Score=67.58 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=86.8
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCCC---CC---C-C----CCCCcEEEeccCCcc---ccc
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGDL---GK---I-T----EVPDNIFLLEDCPHD---WLF 507 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~~---~~---l-~----~~p~nV~i~~~vPq~---~Ll 507 (646)
+|+...|.+. +.+-...+++|+.. .+.++++..+..+. .. + . ..+++|.+....+.. .++
T Consensus 841 plVg~VGRL~---~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iy 917 (1036)
T PLN02316 841 PLVGIITRLT---HQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIY 917 (1036)
T ss_pred eEEEEEeccc---cccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHH
Confidence 4555556664 33334445555544 36777765322121 11 1 1 235778877655543 468
Q ss_pred ccccEEEEcC----chhHHHHHHHhCCCeeecCCCC--ChHHHHH----HHHHc---CCCCCCcCCCCCCHHHHHHHHHH
Q 006412 508 PQCSAVVHHG----GAGTTATGLKAGCPTTVVPFFG--DQFFWGD----RVQQK---GLGPAPIPISQLTVENLSNAVRF 574 (646)
Q Consensus 508 ~~a~~vI~HG----G~gTt~EaL~~GvP~vivP~~~--DQ~~nA~----~ve~~---G~G~~~i~~~~lt~e~L~~aI~~ 574 (646)
+.+|+|+.-. =..+.+||+++|+|.|+-...| |....+. ..+.. +.|. -....+++.|..+|.+
T Consensus 918 aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGf---lf~~~d~~aLa~AL~r 994 (1036)
T PLN02316 918 AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGF---SFDGADAAGVDYALNR 994 (1036)
T ss_pred HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceE---EeCCCCHHHHHHHHHH
Confidence 9999999532 2358999999999998864432 2221110 01111 3453 2456789999999999
Q ss_pred hh-C-HHHHHHHHHHHHH-hhcCCcHHHHHHHHHHh
Q 006412 575 ML-Q-PEVKSRAMELAKL-IENEDGVAAAVDAFHRH 607 (646)
Q Consensus 575 lL-d-p~~r~~A~~la~~-l~~~~G~~~Av~~ie~~ 607 (646)
+| + .+.+....++++. +...-..++.++..+++
T Consensus 995 aL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~L 1030 (1036)
T PLN02316 995 AISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMEL 1030 (1036)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 88 3 3444443444433 33444555655555443
No 115
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.48 E-value=0.058 Score=59.47 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCeE-EEEecCCCCCCCCCCCCcEEEeccCC-cccc---cccccEEEEc----CchhHHHHHHHhCCCee
Q 006412 463 EIILEALRDTGQRG-IIDRGWGDLGKITEVPDNIFLLEDCP-HDWL---FPQCSAVVHH----GGAGTTATGLKAGCPTT 533 (646)
Q Consensus 463 ~~i~~Al~~~g~r~-Iv~~G~~~~~~l~~~p~nV~i~~~vP-q~~L---l~~a~~vI~H----GG~gTt~EaL~~GvP~v 533 (646)
..+++|+...+.++ ++..|.+.. ..++++...++.. +.++ +..+|+||.- |-..+++||+++|+|+|
T Consensus 259 ~~li~A~~~l~~~~~L~ivG~g~~----~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVV 334 (405)
T PRK10125 259 QQLVREMMALGDKIELHTFGKFSP----FTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI 334 (405)
T ss_pred HHHHHHHHhCCCCeEEEEEcCCCc----ccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEE
Confidence 45678887764332 333343321 1245777777764 3333 7889999974 33478999999999999
Q ss_pred ecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Q 006412 534 VVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAV 572 (646)
Q Consensus 534 ivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI 572 (646)
+-...+ ....+.. +.|. .++ .-+++.|++++
T Consensus 335 at~~gG----~~Eiv~~-~~G~-lv~--~~d~~~La~~~ 365 (405)
T PRK10125 335 ATHSDA----AREVLQK-SGGK-TVS--EEEVLQLAQLS 365 (405)
T ss_pred EeCCCC----hHHhEeC-CcEE-EEC--CCCHHHHHhcc
Confidence 987765 2233433 4675 444 34678888754
No 116
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.47 E-value=0.013 Score=65.52 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=83.7
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHH---hcCCeEEEEecCCCC---CCC----CCCCCcEEEeccCCccc---ccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALR---DTGQRGIIDRGWGDL---GKI----TEVPDNIFLLEDCPHDW---LFPQC 510 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~---~~g~r~Iv~~G~~~~---~~l----~~~p~nV~i~~~vPq~~---Ll~~a 510 (646)
.++++..|.+.. .+-.+.++++++ +.+.++++.. .++. ..+ ...++++.+....++.. ++..+
T Consensus 296 ~~~i~~vGrl~~---~Kg~~~li~a~~~l~~~~~~lvi~G-~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a 371 (476)
T cd03791 296 APLFGFVGRLTE---QKGIDLLLEALPELLELGGQLVILG-SGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGA 371 (476)
T ss_pred CCEEEEEeeccc---cccHHHHHHHHHHHHHcCcEEEEEe-cCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhC
Confidence 466666677642 222344455544 3456666553 2221 111 12367887665445443 37899
Q ss_pred cEEEEc----CchhHHHHHHHhCCCeeecCCCC--ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHH
Q 006412 511 SAVVHH----GGAGTTATGLKAGCPTTVVPFFG--DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSR 583 (646)
Q Consensus 511 ~~vI~H----GG~gTt~EaL~~GvP~vivP~~~--DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~ 583 (646)
|+++.- +-..+.+||+++|+|.|+-...+ |....+......|.|. .+ ...++++|.++|.+++ ...-++.
T Consensus 372 Dv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~-~~--~~~~~~~l~~~i~~~l~~~~~~~~ 448 (476)
T cd03791 372 DFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGF-VF--EGYNADALLAALRRALALYRDPEA 448 (476)
T ss_pred CEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeE-Ee--CCCCHHHHHHHHHHHHHHHcCHHH
Confidence 999954 22247899999999999865432 2111111111234675 33 3467899999999886 2111222
Q ss_pred HHHHHHHh-hcCCcHHHHHHHHHHh
Q 006412 584 AMELAKLI-ENEDGVAAAVDAFHRH 607 (646)
Q Consensus 584 A~~la~~l-~~~~G~~~Av~~ie~~ 607 (646)
..++++.. ...-..+..++..++.
T Consensus 449 ~~~~~~~~~~~~fsw~~~a~~~~~~ 473 (476)
T cd03791 449 WRKLQRNAMAQDFSWDRSAKEYLEL 473 (476)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHH
Confidence 23333322 2233556666555544
No 117
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.20 E-value=0.016 Score=60.03 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=72.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC--CchhhhhhCCceEEEcCCCh-HHHHHHHhhcCCCCCCCcch
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA--NFRTFVRSAGVDFFPLGGDP-RVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~--~~~~~v~~~Gl~f~~i~~~p-~~l~~~~~~~~~~~~~~~~~ 267 (646)
|||.|=. +..-|+--|-.|-.+|+++||+|.+.+-+ ...+.++..|+++.+++... ..+.+
T Consensus 1 mkVwiDI-~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~~tl~~--------------- 64 (346)
T COG1817 1 MKVWIDI-GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGGVTLKE--------------- 64 (346)
T ss_pred CeEEEEc-CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCCccHHH---------------
Confidence 4444433 45568889999999999999999997654 45688889999999997542 11110
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEccC
Q 006412 268 ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFTMP 329 (646)
Q Consensus 268 i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t~p 329 (646)
+.. ...+....+. +....|+||+.|. -.+.-..++|-.+|+|.+++.-.+
T Consensus 65 --Kl~-~~~eR~~~L~--------ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 65 --KLL-ESAERVYKLS--------KIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred --HHH-HHHHHHHHHH--------HHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 000 0111111111 1223579999998 456666789999999999976544
No 118
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.06 E-value=0.0059 Score=67.26 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=67.7
Q ss_pred CCcEEEeccCCcccc---cc--cccEEEEcCc----hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCC
Q 006412 492 PDNIFLLEDCPHDWL---FP--QCSAVVHHGG----AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQ 562 (646)
Q Consensus 492 p~nV~i~~~vPq~~L---l~--~a~~vI~HGG----~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~ 562 (646)
.++|.+.+++++.++ +. .+++||...- ..+++||+++|+|+|+-...+ ....+...+.|. .+ ...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~-l~-~~~ 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGL-LL-SKD 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEE-Ee-CCC
Confidence 467999999998765 43 4788886543 478999999999999865333 455666655775 33 234
Q ss_pred CCHHHHHHHHHHhh-CHHHHHHHHHHHHHh
Q 006412 563 LTVENLSNAVRFML-QPEVKSRAMELAKLI 591 (646)
Q Consensus 563 lt~e~L~~aI~~lL-dp~~r~~A~~la~~l 591 (646)
.+.++++++|.+++ |++.++.+++-+...
T Consensus 362 ~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 362 PTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 57899999999999 787776665544433
No 119
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.90 E-value=0.0068 Score=65.24 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=65.2
Q ss_pred CCCcEEEeccCCcc-cccccccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCH
Q 006412 491 VPDNIFLLEDCPHD-WLFPQCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTV 565 (646)
Q Consensus 491 ~p~nV~i~~~vPq~-~Ll~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~ 565 (646)
++++|.+.++.++. .++..++++|.- |...+++||+++|+|+|+..... .....++....|. .+ ..-+.
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~-lv--~~~d~ 332 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGY-LV--PKGDI 332 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCce-Ee--CCCcH
Confidence 46788888865433 238999999853 33468999999999999865431 1234455556675 34 34679
Q ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHh
Q 006412 566 ENLSNAVRFML-QPEVKSRAMELAKLI 591 (646)
Q Consensus 566 e~L~~aI~~lL-dp~~r~~A~~la~~l 591 (646)
++|+++|..++ +++.++.+.+-+...
T Consensus 333 ~~la~~i~~ll~~~~~~~~~~~~a~~~ 359 (372)
T cd04949 333 EALAEAIIELLNDPKLLQKFSEAAYEN 359 (372)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999999999 876555555544433
No 120
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.81 E-value=0.026 Score=63.48 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCCcEEEeccCCcccccccccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHc-----C-CCCCCcCC
Q 006412 491 VPDNIFLLEDCPHDWLFPQCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQK-----G-LGPAPIPI 560 (646)
Q Consensus 491 ~p~nV~i~~~vPq~~Ll~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~-----G-~G~~~i~~ 560 (646)
+.++|.+.+......+++.+|++|.- |-..+++||+++|+|+|+-. .......++.. | .|. .+
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~-lv-- 424 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGE-VV-- 424 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceE-EE--
Confidence 46899999844444558999999865 33478999999999999843 33344555542 2 554 33
Q ss_pred CCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHh-hcCCcHHHHHHHHHH
Q 006412 561 SQLTVENLSNAVRFML-QPEVKSRAMELAKLI-ENEDGVAAAVDAFHR 606 (646)
Q Consensus 561 ~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l-~~~~G~~~Av~~ie~ 606 (646)
...+.++++++|.+++ |++.++++.+-+... .+.-..+..++.+.+
T Consensus 425 ~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~ 472 (475)
T cd03813 425 PPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRR 472 (475)
T ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3567999999999999 888777766655433 333344555555544
No 121
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.69 E-value=0.011 Score=63.35 Aligned_cols=122 Identities=20% Similarity=0.167 Sum_probs=85.2
Q ss_pred CCeEEEEecCCCCCCCCCCCCcEEEeccCCcccc---cccccEEEEcC--------c------hhHHHHHHHhCCCeeec
Q 006412 473 GQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWL---FPQCSAVVHHG--------G------AGTTATGLKAGCPTTVV 535 (646)
Q Consensus 473 g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~L---l~~a~~vI~HG--------G------~gTt~EaL~~GvP~viv 535 (646)
+.++++. |.+.... ...+||.+.+|+|++++ +...-++|.-+ . -+-+.+.+++|+|+|+.
T Consensus 190 ~~~l~i~-G~g~~~~--~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~ 266 (333)
T PRK09814 190 GIKLTVF-GPNPEDL--ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW 266 (333)
T ss_pred CCeEEEE-CCCcccc--ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC
Confidence 4555544 3332211 35689999999999987 44422222221 1 13377889999999985
Q ss_pred CCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhC---HHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 006412 536 PFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQ---PEVKSRAMELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 536 P~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLd---p~~r~~A~~la~~l~~~~G~~~Av~~ie~ 606 (646)
++...+..|++.++|. .++ +.+++.+++..+.+ .+++++++++++++++..=.+.|++.++.
T Consensus 267 ----~~~~~~~~V~~~~~G~-~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 267 ----SKAAIADFIVENGLGF-VVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred ----CCccHHHHHHhCCceE-EeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 4567889999999997 444 67789999988653 35789999999999888777777766554
No 122
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.64 E-value=0.025 Score=64.10 Aligned_cols=157 Identities=13% Similarity=0.052 Sum_probs=92.9
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHh----c-CCeEEEEecCCCC-CCC------CCCCCcEEEeccCCccccccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRD----T-GQRGIIDRGWGDL-GKI------TEVPDNIFLLEDCPHDWLFPQCS 511 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~----~-g~r~Iv~~G~~~~-~~l------~~~p~nV~i~~~vPq~~Ll~~a~ 511 (646)
+.+.+..|.+. +++-...+++|+.. . +.++++. |.+.. +.+ ..+.++|.+.++.+...++..++
T Consensus 319 ~~~il~vGrl~---~~Kg~~~li~A~~~l~~~~p~~~l~i~-G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~ad 394 (500)
T TIGR02918 319 PFSIITASRLA---KEKHIDWLVKAVVKAKKSVPELTFDIY-GEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYE 394 (500)
T ss_pred CeEEEEEeccc---cccCHHHHHHHHHHHHhhCCCeEEEEE-ECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCC
Confidence 34556667763 22333444555543 2 3444444 33321 111 12457899999887777799999
Q ss_pred EEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCC--CCC----HHHHHHHHHHhhCHHHH
Q 006412 512 AVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPIS--QLT----VENLSNAVRFMLQPEVK 581 (646)
Q Consensus 512 ~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~--~lt----~e~L~~aI~~lLdp~~r 581 (646)
++|.- |-..+++||+++|+|+|+....+ .....++.-..|. .++.. .-+ .++|+++|..+++++.+
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~-lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~ 470 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGY-LIPIDEEEDDEDQIITALAEKIVEYFNSNDI 470 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEE-EEeCCccccchhHHHHHHHHHHHHHhChHHH
Confidence 99963 23479999999999999875431 1334455445565 45422 123 78899999999955445
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 582 SRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 582 ~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
+++.+-+......-..+..++.+++++
T Consensus 471 ~~~~~~a~~~a~~fs~~~v~~~w~~ll 497 (500)
T TIGR02918 471 DAFHEYSYQIAEGFLTANIIEKWKKLV 497 (500)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555444444444444555565555544
No 123
>PHA01630 putative group 1 glycosyl transferase
Probab=96.31 E-value=0.039 Score=59.16 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=70.5
Q ss_pred ccCCcccc---cccccEEEE---cCc-hhHHHHHHHhCCCeeecCCCC--ChHH---HHHHHHH-----------cCCCC
Q 006412 499 EDCPHDWL---FPQCSAVVH---HGG-AGTTATGLKAGCPTTVVPFFG--DQFF---WGDRVQQ-----------KGLGP 555 (646)
Q Consensus 499 ~~vPq~~L---l~~a~~vI~---HGG-~gTt~EaL~~GvP~vivP~~~--DQ~~---nA~~ve~-----------~G~G~ 555 (646)
+++|+.++ +..+|++|. ..| ..++.||+++|+|+|+.-..+ |... |+-.++. .++|.
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccc
Confidence 44787776 899999984 232 568999999999999976443 3221 2211111 24554
Q ss_pred CCcCCCCCCHHHHHHHHHHhh-C---HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhcC
Q 006412 556 APIPISQLTVENLSNAVRFML-Q---PEVKSRAMELAKLIENEDGVAAAVDAFHRHLP 609 (646)
Q Consensus 556 ~~i~~~~lt~e~L~~aI~~lL-d---p~~r~~A~~la~~l~~~~G~~~Av~~ie~~L~ 609 (646)
.+ +.+.+++.+++.++| | ++.++....-+....+.-..++.++.+++++.
T Consensus 276 -~v---~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 276 -FL---DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred -cc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 22 236788888888887 5 46666666666666666677888888877763
No 124
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.14 E-value=0.0043 Score=56.52 Aligned_cols=120 Identities=16% Similarity=0.106 Sum_probs=62.9
Q ss_pred EEEEcCCCCC-CChHHHHHHHHHHHHhc--CCeEEEEecCCCCCCCCCC-CCcEEEeccCCcc-cccccccEEEEcC---
Q 006412 446 IYIGFGSMPL-EDPKKTTEIILEALRDT--GQRGIIDRGWGDLGKITEV-PDNIFLLEDCPHD-WLFPQCSAVVHHG--- 517 (646)
Q Consensus 446 VyVsfGS~~~-~~p~~l~~~i~~Al~~~--g~r~Iv~~G~~~~~~l~~~-p~nV~i~~~vPq~-~Ll~~a~~vI~HG--- 517 (646)
+++.+|+... .+.+.+++.+++.+.+. +.++++.. ... ..+.+. .+||.+.++++.. .++.++|++|.-.
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G-~~~-~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~ 81 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIG-NGP-DELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFN 81 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEEC-ESS--HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-
T ss_pred cccccccccccccccchhhhHHHHHHHHCcCEEEEEEe-CCH-HHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCC
Confidence 3445555532 23344444223334332 35555543 321 124333 5699999998421 1278899888632
Q ss_pred --chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh
Q 006412 518 --GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML 576 (646)
Q Consensus 518 --G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL 576 (646)
--+++.|++++|+|+|+.+. .....++..+.|. .+ .-+++++.++|++++
T Consensus 82 ~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~-~~---~~~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 82 EGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGV-LV---ANDPEELAEAIERLL 133 (135)
T ss_dssp SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEE-E----TT-HHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeE-EE---CCCHHHHHHHHHHHh
Confidence 24899999999999999764 2333445567775 23 458999999999887
No 125
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.10 E-value=0.074 Score=59.13 Aligned_cols=160 Identities=14% Similarity=0.116 Sum_probs=86.4
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCC--CC-------CCCCCcEEEeccCCcccc---ccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLG--KI-------TEVPDNIFLLEDCPHDWL---FPQCS 511 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~--~l-------~~~p~nV~i~~~vPq~~L---l~~a~ 511 (646)
.++|.+|.+....+|+ ..+.-.+.|++.+.-.+|........ .+ .--++++.+.+..|..+. +..+|
T Consensus 285 ~vvF~~fn~~~KI~p~-~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~D 363 (468)
T PF13844_consen 285 AVVFGSFNNLFKISPE-TLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLAD 363 (468)
T ss_dssp SEEEEE-S-GGG--HH-HHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-S
T ss_pred ceEEEecCccccCCHH-HHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCC
Confidence 4899999998776765 44666777888776666554322111 00 112578998888775543 68899
Q ss_pred EEE---EcCchhHHHHHHHhCCCeeecCCCC-ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHH
Q 006412 512 AVV---HHGGAGTTATGLKAGCPTTVVPFFG-DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAME 586 (646)
Q Consensus 512 ~vI---~HGG~gTt~EaL~~GvP~vivP~~~-DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~ 586 (646)
++. ..+|..|++|||+.|||+|..|--. =...-+..+..+|+.- .+- -+.++-.+...++- |++++++.++
T Consensus 364 I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~E-lIA---~s~~eYv~~Av~La~D~~~l~~lR~ 439 (468)
T PF13844_consen 364 ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPE-LIA---DSEEEYVEIAVRLATDPERLRALRA 439 (468)
T ss_dssp EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GG-GB----SSHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCch-hcC---CCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 987 4678899999999999999998332 2344556778888884 332 34555555444454 8776665544
Q ss_pred H-HHHhhcC--CcHHHHHHHHHHhc
Q 006412 587 L-AKLIENE--DGVAAAVDAFHRHL 608 (646)
Q Consensus 587 l-a~~l~~~--~G~~~Av~~ie~~L 608 (646)
- .+.+.+. --.+..+..+|+.+
T Consensus 440 ~Lr~~~~~SpLfd~~~~ar~lE~a~ 464 (468)
T PF13844_consen 440 KLRDRRSKSPLFDPKRFARNLEAAY 464 (468)
T ss_dssp HHHHHHHHSGGG-HHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 3 3333222 23455666666654
No 126
>PHA01633 putative glycosyl transferase group 1
Probab=95.98 E-value=0.025 Score=60.53 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=56.5
Q ss_pred CCCCcEEEec---cCCcccc---cccccEEEEc----CchhHHHHHHHhCCCeeecCC------CCCh------HHHHHH
Q 006412 490 EVPDNIFLLE---DCPHDWL---FPQCSAVVHH----GGAGTTATGLKAGCPTTVVPF------FGDQ------FFWGDR 547 (646)
Q Consensus 490 ~~p~nV~i~~---~vPq~~L---l~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~------~~DQ------~~nA~~ 547 (646)
.++++|.+.+ ++++.++ +..+|+||.- |=..+++||+++|+|+|+--. .+|+ ..+..-
T Consensus 198 ~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 198 EVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3578899884 5566544 8999999974 324689999999999988532 2333 112222
Q ss_pred HH--HcCCCCCCcCCCCCCHHHHHHHHHHhh
Q 006412 548 VQ--QKGLGPAPIPISQLTVENLSNAVRFML 576 (646)
Q Consensus 548 ve--~~G~G~~~i~~~~lt~e~L~~aI~~lL 576 (646)
.. ..|.|. .....++++++++|..++
T Consensus 278 ~~~~~~g~g~---~~~~~d~~~la~ai~~~~ 305 (335)
T PHA01633 278 YYDKEHGQKW---KIHKFQIEDMANAIILAF 305 (335)
T ss_pred hcCcccCcee---eecCCCHHHHHHHHHHHH
Confidence 11 235553 234789999999999885
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.75 E-value=1.1 Score=49.84 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=64.3
Q ss_pred cccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-C-HHHHH
Q 006412 505 WLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-Q-PEVKS 582 (646)
Q Consensus 505 ~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-d-p~~r~ 582 (646)
.++.+|+++|..= .-++.-|+..|+|++.+++ | +-....++..|.....++.++++.++|.+.+.+++ + +++++
T Consensus 323 ~iIs~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 323 KILGACELTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred HHHhhCCEEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 3489999999643 3467778999999999987 3 44455568888876457888999999999999999 5 45666
Q ss_pred HHHHHHHHhhc
Q 006412 583 RAMELAKLIEN 593 (646)
Q Consensus 583 ~A~~la~~l~~ 593 (646)
..++..+.++.
T Consensus 399 ~l~~~v~~~r~ 409 (426)
T PRK10017 399 RLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 128
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.71 E-value=0.081 Score=48.40 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=62.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc-hhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHH
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF-RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISI 270 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~-~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~ 270 (646)
||++++.....| ...+++.|+++||+|++++..+. .......|+.++.+.... .. .+..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~----------k~-------~~~~ 60 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR----------KS-------PLNY 60 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC----------Cc-------cHHH
Confidence 577777666556 45779999999999999988655 344457788888884220 00 0110
Q ss_pred HHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCc---cchHHHHHHhC-CCEEEE
Q 006412 271 QRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPA---YGHAHVAEALG-VPIHIF 325 (646)
Q Consensus 271 ~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~---~~~~~vA~~lG-IP~v~~ 325 (646)
.. +. .+.+ .++..+||+|.+.... +.+..++...| +|++..
T Consensus 61 -~~-~~----~l~k--------~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 61 -IK-YF----RLRK--------IIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred -HH-HH----HHHH--------HhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 11 11 1111 1234689999876543 33556778889 888753
No 129
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.29 E-value=1.9 Score=46.27 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=68.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC-ce-EEEcCCChHHHHHHHhhcCCCCCCCcc
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG-VD-FFPLGGDPRVLAGYMARNKGLIPSGPG 266 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G-l~-f~~i~~~p~~l~~~~~~~~~~~~~~~~ 266 (646)
|||+|+-..+.||+.-...+.+.|+++ +.+|++++.+.++++++... ++ .+++... .+.
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~-----------~~~------ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG-----------HGA------ 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc-----------cch------
Confidence 789999999999999999999999985 89999999999988887654 22 2222211 000
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEE
Q 006412 267 EISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHI 324 (646)
Q Consensus 267 ~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~ 324 (646)
. ......+++..+ +..++|++|.-...+-...++...|+|.-+
T Consensus 64 --~-~~~~~~~l~~~l------------r~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 --L-EIGERRRLGHSL------------REKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --h-hhHHHHHHHHHH------------HhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 001112222221 224789887655555566788888999755
No 130
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.25 E-value=1.4 Score=45.61 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=41.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCchhhhhhCC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFG--HRVRLATHANFRTFVRSAG 237 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rG--H~Vt~~t~~~~~~~v~~~G 237 (646)
||+++-..+.||+.-+..+.++|+++. -+|++++.+...++++...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p 48 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP 48 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC
Confidence 689999999999999999999999974 8999999998888887653
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.01 E-value=4.8 Score=43.28 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=43.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG 237 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G 237 (646)
+++||+|+-....||+.-...+.+.|+++ +.+|++++.+.+..+++...
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P 54 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENP 54 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCC
Confidence 56899999999999999999999999987 89999999999888887643
No 132
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.87 E-value=0.016 Score=50.48 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCchhHHHhHhc--CCCcEEEEcCCCCCC--ChH--HHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEE
Q 006412 430 QPQENFVQWIQR--GPEPIYIGFGSMPLE--DPK--KTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIF 496 (646)
Q Consensus 430 ~~~~~l~~wL~~--~~pvVyVsfGS~~~~--~p~--~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~ 496 (646)
+-+..+..|+.. +.|.|+|++||.... ... .++..++++++..++.+|+..+....+.+.++|+||+
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 344556678865 457999999997543 122 4677789999999999999998888888889999985
No 133
>PRK14098 glycogen synthase; Provisional
Probab=94.44 E-value=0.25 Score=55.90 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=87.7
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCCC---CCC----CCCCCcEEEeccCCccc---ccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGDL---GKI----TEVPDNIFLLEDCPHDW---LFPQC 510 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~~---~~l----~~~p~nV~i~~~vPq~~---Ll~~a 510 (646)
.++++..|.+.. .+-.+.+++|+.. .+.++++.. .+.. ..+ ...+++|.+.+.++... +++.+
T Consensus 307 ~~~i~~vgRl~~---~KG~d~li~a~~~l~~~~~~lvivG-~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~a 382 (489)
T PRK14098 307 TPLVGVIINFDD---FQGAELLAESLEKLVELDIQLVICG-SGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGL 382 (489)
T ss_pred CCEEEEeccccc---cCcHHHHHHHHHHHHhcCcEEEEEe-CCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhC
Confidence 356666677643 2223344444443 466766653 2221 111 23467899999888764 48999
Q ss_pred cEEEEcC---c-hhHHHHHHHhCCCeeecCCCC--ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh----CHHH
Q 006412 511 SAVVHHG---G-AGTTATGLKAGCPTTVVPFFG--DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML----QPEV 580 (646)
Q Consensus 511 ~~vI~HG---G-~gTt~EaL~~GvP~vivP~~~--DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL----dp~~ 580 (646)
|+|+.-. | ..+.+||+++|+|.|+....+ |.... ..+..+.|. .+ ...+++.|+++|.+++ +++.
T Consensus 383 Di~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~-l~--~~~d~~~la~ai~~~l~~~~~~~~ 457 (489)
T PRK14098 383 DMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGF-IF--HDYTPEALVAKLGEALALYHDEER 457 (489)
T ss_pred CEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCcee-Ee--CCCCHHHHHHHHHHHHHHHcCHHH
Confidence 9999643 2 247889999999988875433 21110 011235564 33 3567999999998764 5544
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 581 KSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 581 r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
+.++.+ +.+...-..++.++..+++
T Consensus 458 ~~~~~~--~~~~~~fsw~~~a~~y~~l 482 (489)
T PRK14098 458 WEELVL--EAMERDFSWKNSAEEYAQL 482 (489)
T ss_pred HHHHHH--HHhcCCCChHHHHHHHHHH
Confidence 433332 2233444566666555554
No 134
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.68 E-value=0.55 Score=53.50 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=69.4
Q ss_pred CcEEEeccCCcccc---cccccEEEEcC---chhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHH
Q 006412 493 DNIFLLEDCPHDWL---FPQCSAVVHHG---GAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVE 566 (646)
Q Consensus 493 ~nV~i~~~vPq~~L---l~~a~~vI~HG---G~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e 566 (646)
..|.+.++....+| +..+.++|.-+ |.+|..||+.+|+|+| .......|+...=|. .+ -+.+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~-li----~d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGY-II----DDIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcE-Ee----CCHH
Confidence 67888888776555 89999999866 6789999999999999 333344455555564 34 5688
Q ss_pred HHHHHHHHhh-CHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 006412 567 NLSNAVRFML-QPEVKSRAMELAKLIENEDGVAAAVDA 603 (646)
Q Consensus 567 ~L~~aI~~lL-dp~~r~~A~~la~~l~~~~G~~~Av~~ 603 (646)
+|.++|..+| +++-...+..-+-+...+-..+..+..
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~k 514 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIER 514 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999 886666665555444343333344333
No 135
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.16 E-value=1.4 Score=44.85 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=65.2
Q ss_pred CCcEEEeccCCcccc---cccccEEEEc---Cchh-HHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCC
Q 006412 492 PDNIFLLEDCPHDWL---FPQCSAVVHH---GGAG-TTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLT 564 (646)
Q Consensus 492 p~nV~i~~~vPq~~L---l~~a~~vI~H---GG~g-Tt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt 564 (646)
.+++.+.++++...+ +..++++++- .|.| ++.|++++|+|++.-.. ..+...+...+.|. ..... +
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~~~~g~-~~~~~--~ 328 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVEDGETGL-LVPPG--D 328 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcCCCceE-ecCCC--C
Confidence 467888899884333 6778898887 3543 46999999999976543 22333333332343 22222 7
Q ss_pred HHHHHHHHHHhh-CHHHHHHHHH-HHHHhhcCCcHHHHHHHHHH
Q 006412 565 VENLSNAVRFML-QPEVKSRAME-LAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 565 ~e~L~~aI~~lL-dp~~r~~A~~-la~~l~~~~G~~~Av~~ie~ 606 (646)
.+.+.+++..++ +++.++...+ ....+...-..+..++.+.+
T Consensus 329 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (381)
T COG0438 329 VEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLE 372 (381)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 899999999998 6655555444 33333333344444444333
No 136
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.95 E-value=1.2 Score=50.80 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=70.2
Q ss_pred cEEEEcCCC-CCCChHHHHHHHHHHHHhc-CCeEEEEecCCCC-CCC------CCCCCcEEEeccCCcc-cccccccEEE
Q 006412 445 PIYIGFGSM-PLEDPKKTTEIILEALRDT-GQRGIIDRGWGDL-GKI------TEVPDNIFLLEDCPHD-WLFPQCSAVV 514 (646)
Q Consensus 445 vVyVsfGS~-~~~~p~~l~~~i~~Al~~~-g~r~Iv~~G~~~~-~~l------~~~p~nV~i~~~vPq~-~Ll~~a~~vI 514 (646)
++..+.|-+ ...++..+++.+...++.. +.++++.. .+.. +.+ ..+.++|++.++.... .++..+|+||
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVG-dG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfV 477 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVG-DGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFI 477 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEe-CchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEE
Confidence 344444543 2334455555544444443 45555543 3321 111 1245889999985322 2389999999
Q ss_pred Ec---Cc-hhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Q 006412 515 HH---GG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAV 572 (646)
Q Consensus 515 ~H---GG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI 572 (646)
.. -| .+++.||+++|+|+|+.... .+...+..-..|. .++. -+.+.+.+++
T Consensus 478 lPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~-LVp~--~D~~aLa~ai 532 (578)
T PRK15490 478 LFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGF-ILDD--AQTVNLDQAC 532 (578)
T ss_pred EcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEE-EECC--CChhhHHHHH
Confidence 63 34 57999999999999987653 3456666666675 4443 3455555554
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.83 E-value=15 Score=39.00 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=67.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC-ce-EEEcCCChHHHHHHHhhcCCCCCCCcch
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG-VD-FFPLGGDPRVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G-l~-f~~i~~~p~~l~~~~~~~~~~~~~~~~~ 267 (646)
||+|+-..+.||+.-...+.+.|++. +.+|++++.+.++.+++... ++ ++.++... + .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----------~-------~ 62 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLGH-----------G-------A 62 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCcc-----------c-------c
Confidence 68999999999999999999999986 89999999988888887643 22 23222110 0 0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 268 ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 268 i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.. .....+++..+ +..++|++|.-...+-...++...|+|.-+-
T Consensus 63 ~~--~~~~~~~~~~l------------r~~~yD~vi~l~~~~~s~ll~~~~~~~~riG 106 (334)
T TIGR02195 63 LE--LTERRRLGRSL------------REERYDQAIVLPNSLKSALIPFFAGIPHRTG 106 (334)
T ss_pred hh--hhHHHHHHHHH------------hhcCCCEEEECCCCHHHHHHHHHcCCCceee
Confidence 00 01111222221 2247898887655555667788889987543
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.79 E-value=15 Score=38.97 Aligned_cols=100 Identities=10% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCChH---HHHHHHHHHHHhcCCeEEEEecCCCCCC----C---CCCCCcEEEeccCCcc---cccccccEEEEcCc-hh
Q 006412 455 LEDPK---KTTEIILEALRDTGQRGIIDRGWGDLGK----I---TEVPDNIFLLEDCPHD---WLFPQCSAVVHHGG-AG 520 (646)
Q Consensus 455 ~~~p~---~l~~~i~~Al~~~g~r~Iv~~G~~~~~~----l---~~~p~nV~i~~~vPq~---~Ll~~a~~vI~HGG-~g 520 (646)
..+.+ ++.+.+.+.++..+..+.+++......+ + ....+.+.+.+--+.+ .++..||.||.-+. .+
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvS 240 (311)
T PF06258_consen 161 RWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVS 240 (311)
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHH
Confidence 34555 5666666666777777777754432211 1 1123556444544444 44888888876666 57
Q ss_pred HHHHHHHhCCCeeecCCCCChHHHHHH---HHHcCCC
Q 006412 521 TTATGLKAGCPTTVVPFFGDQFFWGDR---VQQKGLG 554 (646)
Q Consensus 521 Tt~EaL~~GvP~vivP~~~DQ~~nA~~---ve~~G~G 554 (646)
-+.||+..|+|+.++|..+-.....+. +++.|+-
T Consensus 241 MvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~ 277 (311)
T PF06258_consen 241 MVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAV 277 (311)
T ss_pred HHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCE
Confidence 789999999999999988622223333 4455654
No 139
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.76 E-value=6.9 Score=41.26 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=45.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC-ce-EEEcC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG-VD-FFPLG 244 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G-l~-f~~i~ 244 (646)
||+|+-....||+.-...+.++|+++ +.+|++++.+.++++++... +. ++++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec
Confidence 68899999999999999999999998 99999999999998888644 43 55554
No 140
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.64 E-value=1.1 Score=43.35 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=60.6
Q ss_pred EEecCCCCChHHHHHHHHHH--HhCCCEEEEEeCCCch--hhhh---h-CC--ceEEEcCCChHHHHHHHhhcCCCCCCC
Q 006412 195 ILVVGTRGDVQPFLAMAKRL--QEFGHRVRLATHANFR--TFVR---S-AG--VDFFPLGGDPRVLAGYMARNKGLIPSG 264 (646)
Q Consensus 195 i~~~gs~GHv~P~laLAk~L--~~rGH~Vt~~t~~~~~--~~v~---~-~G--l~f~~i~~~p~~l~~~~~~~~~~~~~~ 264 (646)
++..|++||..-++.|.+.+ ....++..++|..+.. ..++ + .+ .+++.++-.-. +.+
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~------v~q------- 68 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRARE------VGQ------- 68 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEE------ech-------
Confidence 45678999999999999999 3446777777765432 2222 1 11 12333321100 000
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccc--hHHHHHHh------CCCEEEEEcc
Q 006412 265 PGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYG--HAHVAEAL------GVPIHIFFTM 328 (646)
Q Consensus 265 ~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~--~~~vA~~l------GIP~v~~~t~ 328 (646)
.........+..++..++-. ...+||+||++-+..+ ...+|..+ |.+++.+-+.
T Consensus 69 -~~~~~~~~~l~~~~~~~~il---------~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 69 -SYLTSIFTTLRAFLQSLRIL---------RRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred -hhHhhHHHHHHHHHHHHHHH---------HHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 00111122233333222211 2248999999955544 56788999 9999887554
No 141
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=92.52 E-value=0.28 Score=44.93 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhh--hhhCCceEEEcC
Q 006412 206 PFLAMAKRLQEFGHRVRLATHANFRTF--VRSAGVDFFPLG 244 (646)
Q Consensus 206 P~laLAk~L~~rGH~Vt~~t~~~~~~~--v~~~Gl~f~~i~ 244 (646)
-+..|+++|.++||+|++++....... ....|++++.++
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 46 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLP 46 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEecc
Confidence 367899999999999999986544332 345677777665
No 142
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.24 E-value=17 Score=38.78 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=69.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC-ce-EEEcCCChHHHHHHHhhcCCCCCCCcch
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG-VD-FFPLGGDPRVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G-l~-f~~i~~~p~~l~~~~~~~~~~~~~~~~~ 267 (646)
||+|+-....||+.-...+.+.|+++ +.+|++++.+.+++.++... ++ ++++..... ..+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~--------~~~-------- 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA--------KAG-------- 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh--------cch--------
Confidence 68999999999999999999999986 89999999999988887653 43 444432100 000
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEE
Q 006412 268 ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFF 326 (646)
Q Consensus 268 i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~ 326 (646)
... .....+++..+ +..++|++|.-........++...|+|.-+-+
T Consensus 65 ~~~-~~~~~~l~~~l------------r~~~yD~vidl~~~~~s~ll~~l~~a~~riG~ 110 (344)
T TIGR02201 65 ERK-LANQFHLIKVL------------RANRYDLVVNLTDQWMVAILVKLLNARVKIGF 110 (344)
T ss_pred HHH-HHHHHHHHHHH------------HhCCCCEEEECCcchHHHHHHHhcCCCeEEee
Confidence 000 01111222221 22478988865445556688899999986543
No 143
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=92.00 E-value=8.2 Score=42.50 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=38.2
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~ 235 (646)
..+||++...|+. ...-...+.+.|+++|++|+++.++....++..
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 4578999988876 445778899999999999999988888887764
No 144
>PLN02939 transferase, transferring glycosyl groups
Probab=91.02 E-value=1.8 Score=52.08 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=86.5
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCCC----CCC------CCCCCcEEEeccCCcc---cccc
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGDL----GKI------TEVPDNIFLLEDCPHD---WLFP 508 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~~----~~l------~~~p~nV~i~~~vPq~---~Ll~ 508 (646)
+++...|.+. +.+-+..+++|+.. .+.++++.. .+.. ..+ ....++|.+.++.+.. .+++
T Consensus 780 pLIg~VGRL~---~QKGiDlLleA~~~Ll~~dvqLVIvG-dGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYA 855 (977)
T PLN02939 780 PLVGCITRLV---PQKGVHLIRHAIYKTAELGGQFVLLG-SSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYA 855 (977)
T ss_pred eEEEEeecCC---cccChHHHHHHHHHHhhcCCEEEEEe-CCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHH
Confidence 5555556664 23323444555543 466766653 2211 111 1235789998888765 3589
Q ss_pred cccEEEEcC----chhHHHHHHHhCCCeeecCCCC--ChHHH--HHHH-HHcCCCCCCcCCCCCCHHHHHHHHHHhh---
Q 006412 509 QCSAVVHHG----GAGTTATGLKAGCPTTVVPFFG--DQFFW--GDRV-QQKGLGPAPIPISQLTVENLSNAVRFML--- 576 (646)
Q Consensus 509 ~a~~vI~HG----G~gTt~EaL~~GvP~vivP~~~--DQ~~n--A~~v-e~~G~G~~~i~~~~lt~e~L~~aI~~lL--- 576 (646)
.+|+||.-. -..+.+||+++|+|.|+....| |-... ...+ +.-+-|. .+ ...+++.|.++|.+++
T Consensus 856 aADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGf-Lf--~~~D~eaLa~AL~rAL~~~ 932 (977)
T PLN02939 856 ASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGF-TF--LTPDEQGLNSALERAFNYY 932 (977)
T ss_pred hCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceE-Ee--cCCCHHHHHHHHHHHHHHh
Confidence 999999642 2358999999999999876543 22211 1111 1123453 22 3468889999888764
Q ss_pred --CHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 006412 577 --QPEVKSRAMELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 577 --dp~~r~~A~~la~~l~~~~G~~~Av~~ie~ 606 (646)
+++.+.++.+ +.+...-..+..++..++
T Consensus 933 ~~dpe~~~~L~~--~am~~dFSWe~~A~qYee 962 (977)
T PLN02939 933 KRKPEVWKQLVQ--KDMNIDFSWDSSASQYEE 962 (977)
T ss_pred ccCHHHHHHHHH--HHHHhcCCHHHHHHHHHH
Confidence 4666665544 223333355555554443
No 145
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=90.57 E-value=2.1 Score=42.38 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=29.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
|||++.---+. +-.-+.+|+++|++.||+|+++++..-+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 78888765444 44557889999988899999999876544
No 146
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=3.3 Score=46.82 Aligned_cols=128 Identities=17% Similarity=0.242 Sum_probs=79.6
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCC-----------CCCCCcEEEeccCCcccc---cccc
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKI-----------TEVPDNIFLLEDCPHDWL---FPQC 510 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l-----------~~~p~nV~i~~~vPq~~L---l~~a 510 (646)
+||++|+......|+-+ ..=.+-++..+--++|.++.++.+.. .=-+++..+.+-.|.... +..+
T Consensus 431 vVf~c~~n~~K~~pev~-~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iA 509 (620)
T COG3914 431 VVFCCFNNYFKITPEVF-ALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIA 509 (620)
T ss_pred EEEEecCCcccCCHHHH-HHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchh
Confidence 77777777766665533 33355566666666666554322111 001456777776665543 6779
Q ss_pred cEEEE---cCchhHHHHHHHhCCCeeecCCCCChHH---HHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCH
Q 006412 511 SAVVH---HGGAGTTATGLKAGCPTTVVPFFGDQFF---WGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQP 578 (646)
Q Consensus 511 ~~vI~---HGG~gTt~EaL~~GvP~vivP~~~DQ~~---nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp 578 (646)
|+|.- =||+.|+.|+|..|+|++..+ |+|+. -+.++..+|+-- .+ ..-..+=++.+++.-.|.
T Consensus 510 DlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e-~v--A~s~~dYV~~av~~g~dr 578 (620)
T COG3914 510 DLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPE-LV--ADSRADYVEKAVAFGSDR 578 (620)
T ss_pred heeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCch-hh--cCCHHHHHHHHHHhcccH
Confidence 99985 589999999999999999874 88875 234455566543 22 223344566666655454
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=88.65 E-value=12 Score=36.16 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=54.0
Q ss_pred hCCCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHH---HHHHHHHHHHHHhhhcCCCccc
Q 006412 216 EFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISI---QRKQIKAIIESLLPACTDPDIE 292 (646)
Q Consensus 216 ~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~---~~~~~~~ll~~l~~~~~~~d~~ 292 (646)
++||+|+++|.......- .|++.+.+...... ..+..+.. ..+.. .-..+.+.+..+..
T Consensus 1 q~gh~v~fl~~~~~~~~~--~GV~~~~y~~~~~~-------~~~~~~~~-~~~e~~~~rg~av~~a~~~L~~-------- 62 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--PGVRVVRYRPPRGP-------TPGTHPYV-RDFEAAVLRGQAVARAARQLRA-------- 62 (171)
T ss_pred CCCCEEEEEecCCCCCCC--CCcEEEEeCCCCCC-------CCCCCccc-ccHHHHHHHHHHHHHHHHHHHH--------
Confidence 479999999965544433 68887766432100 11111110 01111 11222222222221
Q ss_pred cCCCCcccEEEECCCccchHHHHHHh-CCCEEEEEccC
Q 006412 293 TGVPFRSQAIIANPPAYGHAHVAEAL-GVPIHIFFTMP 329 (646)
Q Consensus 293 ~~~~~~pD~IIad~~~~~~~~vA~~l-GIP~v~~~t~p 329 (646)
+-|.||+||+.+..-.+..+-+.+ ++|++.++-..
T Consensus 63 --~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~ 98 (171)
T PF12000_consen 63 --QGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFY 98 (171)
T ss_pred --cCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEE
Confidence 258999999998777778888988 99999987653
No 148
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=88.21 E-value=3.6 Score=34.73 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=50.7
Q ss_pred cCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHH-HHhhc
Q 006412 516 HGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELA-KLIEN 593 (646)
Q Consensus 516 HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la-~~l~~ 593 (646)
+|-...+.|++++|+|+|.-.- ......+ ..|... +... +.+++.++|..++ ||+.+++..+-+ +.+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~~~~~--~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-EDGEHI--ITYN--DPEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CCCCeE--EEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4556789999999999997643 2222222 223221 2233 8999999999999 887666665555 44444
Q ss_pred CCcHHHHHHHH
Q 006412 594 EDGVAAAVDAF 604 (646)
Q Consensus 594 ~~G~~~Av~~i 604 (646)
.-..+..++.|
T Consensus 80 ~~t~~~~~~~i 90 (92)
T PF13524_consen 80 RHTWEHRAEQI 90 (92)
T ss_pred hCCHHHHHHHH
Confidence 55555544443
No 149
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.19 E-value=27 Score=37.28 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=67.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCC--CEEEEEeCCCchhhhhhCC-ce-EEEcCCChHHHHHHHhhcCCCCCCCc
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFG--HRVRLATHANFRTFVRSAG-VD-FFPLGGDPRVLAGYMARNKGLIPSGP 265 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rG--H~Vt~~t~~~~~~~v~~~G-l~-f~~i~~~p~~l~~~~~~~~~~~~~~~ 265 (646)
+|+|+++-....||+.=...+-..|+++. .++++++...+.+.++..- +. ++.+.. +..+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~----------~~~~------ 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK----------KKKG------ 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccc----------cccc------
Confidence 58999999999999999999999999885 9999999998888776532 11 111110 0000
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEE
Q 006412 266 GEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHI 324 (646)
Q Consensus 266 ~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~ 324 (646)
........+...+ +..++|+||.=...+-...++..+++|.-+
T Consensus 65 ----~~~~~~~~l~~~l------------r~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ----LGLKERLALLRTL------------RKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ----cchHHHHHHHHHh------------hccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011222222221 234789988776666666778888998755
No 150
>PRK14099 glycogen synthase; Provisional
Probab=87.83 E-value=2.9 Score=47.32 Aligned_cols=152 Identities=17% Similarity=0.196 Sum_probs=80.2
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCC---CCCC----CCCCCcE-EEeccCCcccc---c-cc
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGD---LGKI----TEVPDNI-FLLEDCPHDWL---F-PQ 509 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~---~~~l----~~~p~nV-~i~~~vPq~~L---l-~~ 509 (646)
+++...|.+. +.+-++.+++|+.. .+.++++..+ ++ ...+ ...++++ .+.++ .+++ + ..
T Consensus 296 ~li~~VgRL~---~~KG~d~Li~A~~~l~~~~~~lvivG~-G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a~ 369 (485)
T PRK14099 296 LLLGVISRLS---WQKGLDLLLEALPTLLGEGAQLALLGS-GDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQAG 369 (485)
T ss_pred cEEEEEecCC---ccccHHHHHHHHHHHHhcCcEEEEEec-CCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHhc
Confidence 3444456653 33334445555543 3566665532 22 1111 1235565 56776 3333 3 56
Q ss_pred ccEEEE---cCc-hhHHHHHHHhCCCeeecCCCC--ChHHHHH-HHHHc--CCCCCCcCCCCCCHHHHHHHHHH---hh-
Q 006412 510 CSAVVH---HGG-AGTTATGLKAGCPTTVVPFFG--DQFFWGD-RVQQK--GLGPAPIPISQLTVENLSNAVRF---ML- 576 (646)
Q Consensus 510 a~~vI~---HGG-~gTt~EaL~~GvP~vivP~~~--DQ~~nA~-~ve~~--G~G~~~i~~~~lt~e~L~~aI~~---lL- 576 (646)
+|+||. +=| ..+.+||+++|+|.|+-...+ |-...+. ..+.. +.|. .+ ...++++|+++|.+ ++
T Consensus 370 aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~-l~--~~~d~~~La~ai~~a~~l~~ 446 (485)
T PRK14099 370 ADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGV-QF--SPVTADALAAALRKTAALFA 446 (485)
T ss_pred CCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceE-Ee--CCCCHHHHHHHHHHHHHHhc
Confidence 999996 233 347789999998777654322 3211111 01111 3564 33 34679999999986 55
Q ss_pred CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 006412 577 QPEVKSRAMELAKLIENEDGVAAAVDAFHRH 607 (646)
Q Consensus 577 dp~~r~~A~~la~~l~~~~G~~~Av~~ie~~ 607 (646)
|++.++++.+-+. ...-..++.++..+++
T Consensus 447 d~~~~~~l~~~~~--~~~fSw~~~a~~y~~l 475 (485)
T PRK14099 447 DPVAWRRLQRNGM--TTDVSWRNPAQHYAAL 475 (485)
T ss_pred CHHHHHHHHHHhh--hhcCChHHHHHHHHHH
Confidence 7776666555442 2333455555544443
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=86.05 E-value=2.9 Score=38.77 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCCCch
Q 006412 200 TRGDVQPFLAMAKRLQEFGHRVRLATHANFR 230 (646)
Q Consensus 200 s~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~ 230 (646)
.+|==.-...|+++|+++||+|++++.....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 4455566899999999999999999876443
No 152
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=85.09 E-value=7.9 Score=43.44 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=59.1
Q ss_pred EEeccCCcccc---cccccEEEE---cCch-hHHHHHHHhCCC----eeecCCCCChHHHHHHHHHcCCCCCCcCCCCCC
Q 006412 496 FLLEDCPHDWL---FPQCSAVVH---HGGA-GTTATGLKAGCP----TTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLT 564 (646)
Q Consensus 496 ~i~~~vPq~~L---l~~a~~vI~---HGG~-gTt~EaL~~GvP----~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt 564 (646)
++.+++++.++ +..+|+||. +-|. .++.||+++|+| +|+--+.+--.. ..-|. .+ ...+
T Consensus 344 ~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~-lv--~p~d 413 (460)
T cd03788 344 YLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGAL-LV--NPYD 413 (460)
T ss_pred EEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCE-EE--CCCC
Confidence 34568888877 899999995 3454 567899999999 444333221111 12243 23 3567
Q ss_pred HHHHHHHHHHhh-CH-HHH-HHHHHHHHHhhcCCcHHHHHHHHH
Q 006412 565 VENLSNAVRFML-QP-EVK-SRAMELAKLIENEDGVAAAVDAFH 605 (646)
Q Consensus 565 ~e~L~~aI~~lL-dp-~~r-~~A~~la~~l~~~~G~~~Av~~ie 605 (646)
.++++++|.++| ++ +.+ .+.++..+.+. ....+.-++.+.
T Consensus 414 ~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~-~~~~~~w~~~~l 456 (460)
T cd03788 414 IDEVADAIHRALTMPLEERRERHRKLREYVR-THDVQAWANSFL 456 (460)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence 999999999998 43 333 33344444443 344444444433
No 153
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.81 E-value=1.4 Score=40.38 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=38.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAG 237 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~G 237 (646)
|||++...|+.+=+. ...+.++|+++|++|+++.++...+++...+
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 689999999877666 9999999999999999998888888877655
No 154
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=82.27 E-value=3.4 Score=42.62 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEecCCC--------CCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHhC
Q 006412 459 KKTTEIILEALRDT-GQRGIIDRGWGD--------LGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKAG 529 (646)
Q Consensus 459 ~~l~~~i~~Al~~~-g~r~Iv~~G~~~--------~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~G 529 (646)
..+.+.+..+++.. +.++++..-... ..........+.+...++-.+|+.+|++|||-.+. +-.||+.+|
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~VvtinSt-vGlEAll~g 218 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDAVVTINST-VGLEALLHG 218 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCEEEEECCH-HHHHHHHcC
Confidence 44556655666655 566666532211 11111233445556678888889999999998875 889999999
Q ss_pred CCeeecC
Q 006412 530 CPTTVVP 536 (646)
Q Consensus 530 vP~vivP 536 (646)
+|++++.
T Consensus 219 kpVi~~G 225 (269)
T PF05159_consen 219 KPVIVFG 225 (269)
T ss_pred CceEEec
Confidence 9999974
No 155
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=81.69 E-value=14 Score=39.68 Aligned_cols=94 Identities=24% Similarity=0.259 Sum_probs=57.0
Q ss_pred eEEEEecCCCC-----ChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh----CCce----EEEcCCChHHHHHHHhhcC
Q 006412 192 NIAILVVGTRG-----DVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS----AGVD----FFPLGGDPRVLAGYMARNK 258 (646)
Q Consensus 192 rIvi~~~gs~G-----Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~----~Gl~----f~~i~~~p~~l~~~~~~~~ 258 (646)
-|+|.|..++| ...-|.+|++.|.++|++|.+..++.-++.+++ .+-. ...+.+
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g------------- 248 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAG------------- 248 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccC-------------
Confidence 47777754433 244689999999988999998876654433322 1100 011110
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 259 GLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
..+ ..++..++. +.|++|++ ..+.+|+|..+|+|++.+|.
T Consensus 249 --------~~s--L~el~ali~-----------------~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 249 --------ETQ--LEQAVILIA-----------------ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred --------CCC--HHHHHHHHH-----------------hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 000 223333443 35788886 45668999999999999875
No 156
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=81.30 E-value=14 Score=39.35 Aligned_cols=94 Identities=27% Similarity=0.291 Sum_probs=57.9
Q ss_pred eEEEEecCCCC-----ChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC----CceEEEcCCChHHHHHHHhhcCCCCC
Q 006412 192 NIAILVVGTRG-----DVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA----GVDFFPLGGDPRVLAGYMARNKGLIP 262 (646)
Q Consensus 192 rIvi~~~gs~G-----Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~----Gl~f~~i~~~p~~l~~~~~~~~~~~~ 262 (646)
-|+|.|.++.| ...-+.+|++.|.++|.+|.+.+++.-++.++.- +-....+. |
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~--------------g--- 238 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLA--------------G--- 238 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCC--------------C---
Confidence 57777755444 4557899999999999999888776544433221 00001110 0
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 263 SGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 263 ~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
..+ ..++..++. +.|++|++ ..+.+|+|..+|+|++.++.
T Consensus 239 ----~~s--L~el~ali~-----------------~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 ----ETS--LDEAVDLIA-----------------LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred ----CCC--HHHHHHHHH-----------------hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 000 223333443 45788886 45567999999999998875
No 157
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.27 E-value=12 Score=38.48 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc-hhhhhhCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF-RTFVRSAG 237 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~-~~~v~~~G 237 (646)
|+|+++.. .|. -..|++.|.++||+|...+.... ...+...|
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g 43 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ 43 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC
Confidence 56666543 333 67899999999999998765543 34444443
No 158
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.98 E-value=20 Score=38.28 Aligned_cols=96 Identities=24% Similarity=0.303 Sum_probs=61.1
Q ss_pred cceEEEEecCCCC-----ChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC--CceEEE-cCCChHHHHHHHhhcCCCC
Q 006412 190 RLNIAILVVGTRG-----DVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA--GVDFFP-LGGDPRVLAGYMARNKGLI 261 (646)
Q Consensus 190 ~mrIvi~~~gs~G-----Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~--Gl~f~~-i~~~p~~l~~~~~~~~~~~ 261 (646)
+..|+|.+..++| -.--+..|++.|.++|.+|.++.+..-.+.+++. ++.... +.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~----------------- 237 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILA----------------- 237 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccC-----------------
Confidence 5678888874554 5567999999999999999998777444433321 111110 11
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 262 PSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 262 ~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
+. .. ..++..++. .+|++|++ ..+..|+|..+|.|++.++.
T Consensus 238 ~k--~s----L~e~~~li~-----------------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 238 GK--TS----LEELAALIA-----------------GADLVIGN--DSGPMHLAAALGTPTIALYG 278 (334)
T ss_pred CC--CC----HHHHHHHHh-----------------cCCEEEcc--CChHHHHHHHcCCCEEEEEC
Confidence 00 00 223333332 46888886 45557999999999999874
No 159
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=78.62 E-value=10 Score=42.52 Aligned_cols=100 Identities=13% Similarity=0.163 Sum_probs=65.6
Q ss_pred EEeccCCcccc---cccccEEEE---cCch-hHHHHHHHhCCC----eeecCCCCChHHHHHHHHHcCCCCCCcCCCCCC
Q 006412 496 FLLEDCPHDWL---FPQCSAVVH---HGGA-GTTATGLKAGCP----TTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLT 564 (646)
Q Consensus 496 ~i~~~vPq~~L---l~~a~~vI~---HGG~-gTt~EaL~~GvP----~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt 564 (646)
++.+.+++.++ +..+|+++. +-|. .+..|++++|+| +|+--+.|--.. + +-|+ .+ ...+
T Consensus 339 ~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~----l---~~gl-lV--nP~d 408 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE----L---NGAL-LV--NPYD 408 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH----h---CCcE-EE--CCCC
Confidence 34457777776 899999996 3454 577899999999 666655543222 2 2343 33 4578
Q ss_pred HHHHHHHHHHhh-C--HHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 006412 565 VENLSNAVRFML-Q--PEVKSRAMELAKLIENEDGVAAAVDAFHR 606 (646)
Q Consensus 565 ~e~L~~aI~~lL-d--p~~r~~A~~la~~l~~~~G~~~Av~~ie~ 606 (646)
.++++++|.++| . .+.+++++++.+.+.. ..+..-++.+..
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~ 452 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLS 452 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHH
Confidence 999999999998 2 3566666667666654 444444444443
No 160
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.91 E-value=36 Score=36.50 Aligned_cols=119 Identities=17% Similarity=0.250 Sum_probs=77.9
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC---CchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCC
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA---NFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSG 264 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~---~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~ 264 (646)
..+-|+++++.|--|+--+|--=|..|++.|.+|.+++.- ...+......++++.++.-+ ++ ..+
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~-----~~-------~~~ 77 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP-----FL-------QGG 77 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCc-----cc-------CCC
Confidence 3567899999999999988999999999999999998643 35667777789999987543 11 111
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEE-EECCCccchHHHHHHh----CCCEEEEE
Q 006412 265 PGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAI-IANPPAYGHAHVAEAL----GVPIHIFF 326 (646)
Q Consensus 265 ~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~I-Iad~~~~~~~~vA~~l----GIP~v~~~ 326 (646)
+..+....+.+-..+.-+|.... ...+|.| +-||++.....+|..+ |..+++=+
T Consensus 78 p~~~~l~lKvf~Qfl~Ll~aL~~--------~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDW 136 (444)
T KOG2941|consen 78 PRVLFLPLKVFWQFLSLLWALFV--------LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDW 136 (444)
T ss_pred chhhhhHHHHHHHHHHHHHHHHh--------ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEe
Confidence 11122223444444444443332 2367776 5689998877777665 45555533
No 161
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=77.80 E-value=6.8 Score=38.33 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=32.3
Q ss_pred cceEEEEecCCCCChHH------------HHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 190 RLNIAILVVGTRGDVQP------------FLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P------------~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
..||+|...|++-.+.| -.+||+++..+||+|++++.+.... ...+++.+.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--~p~~~~~i~v~ 67 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--PPPGVKVIRVE 67 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS------TTEEEEE-S
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--ccccceEEEec
Confidence 35667776666655554 3899999999999999998774211 13466776664
No 162
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=77.64 E-value=3.4 Score=37.40 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=26.9
Q ss_pred ceEEEEecCCCC---ChHHHHHHHHHHHhCCCEEEEEeCCCc
Q 006412 191 LNIAILVVGTRG---DVQPFLAMAKRLQEFGHRVRLATHANF 229 (646)
Q Consensus 191 mrIvi~~~gs~G---Hv~P~laLAk~L~~rGH~Vt~~t~~~~ 229 (646)
|||+|+.-+-.+ .-.-.++|+.+.++|||+|.+++..++
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 788888876432 335578999999999999999987654
No 163
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=75.23 E-value=22 Score=31.59 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=40.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~ 244 (646)
||++.+.++-.|.....-++..|+++|++|.++... .+.+.+.+....++-+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS 57 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLS 57 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 588999999999999999999999999999887532 33444555555555554
No 164
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=74.86 E-value=16 Score=39.19 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=26.4
Q ss_pred eEEEEecCCCC----ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 006412 192 NIAILVVGTRG----DVQPFLAMAKRLQEFGHRVRLATHAN 228 (646)
Q Consensus 192 rIvi~~~gs~G----Hv~P~laLAk~L~~rGH~Vt~~t~~~ 228 (646)
-|+|.|.++.. -..-|.+|++.|.++|++|.++..+.
T Consensus 185 ~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~ 225 (352)
T PRK10422 185 YVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPD 225 (352)
T ss_pred eEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 46666654322 45568999999999999998886653
No 165
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=74.52 E-value=15 Score=37.06 Aligned_cols=97 Identities=27% Similarity=0.406 Sum_probs=51.8
Q ss_pred CcceEEEEecCCCC----ChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhh--CCce--EEEcCCChHHHHHHHhhcC
Q 006412 189 PRLNIAILVVGTRG----DVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRS--AGVD--FFPLGGDPRVLAGYMARNK 258 (646)
Q Consensus 189 ~~mrIvi~~~gs~G----Hv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~--~Gl~--f~~i~~~p~~l~~~~~~~~ 258 (646)
.+..|+|.+.++.. -..-+.+|++.|.++|.+|.++.++.- ++.+.. .++. +..+.+.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 171 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGK------------ 171 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTT------------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCC------------
Confidence 44567777765442 334479999999999988888877654 222211 1221 2222111
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 259 GLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
. -..++..++. ..|++|++ ..+.+|+|..+|+|++.++.
T Consensus 172 ---------~--~l~e~~ali~-----------------~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 172 ---------T--SLRELAALIS-----------------RADLVIGN--DTGPMHLAAALGTPTVALFG 210 (247)
T ss_dssp ---------S---HHHHHHHHH-----------------TSSEEEEE--SSHHHHHHHHTT--EEEEES
T ss_pred ---------C--CHHHHHHHHh-----------------cCCEEEec--CChHHHHHHHHhCCEEEEec
Confidence 0 0223333332 46888885 44557999999999999874
No 166
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=73.21 E-value=13 Score=40.13 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHhcCCeEEEEecCC---CCCCCCCCCCcEEEec-cCCcccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHH
Q 006412 468 ALRDTGQRGIIDRGWG---DLGKITEVPDNIFLLE-DCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFF 543 (646)
Q Consensus 468 Al~~~g~r~Iv~~G~~---~~~~l~~~p~nV~i~~-~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~ 543 (646)
.+.+.++.+++..-.. .........+++..+. ..+-.+++..+|++||--. +.+.|.+..++|++....-.|.+.
T Consensus 224 ~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~D~~~Y~ 302 (369)
T PF04464_consen 224 FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQPDLEEYE 302 (369)
T ss_dssp HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-TTTTTTT
T ss_pred HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEeccHHHHh
Confidence 5556666666543211 1111123457887765 3446677999999999885 589999999999998876666552
Q ss_pred HHHHHHHcCCCCCCcC-----CCCCCHHHHHHHHHHhh-CH-HHHHHHHHHHHHhhc-CC--cHHHHHHHHHH
Q 006412 544 WGDRVQQKGLGPAPIP-----ISQLTVENLSNAVRFML-QP-EVKSRAMELAKLIEN-ED--GVAAAVDAFHR 606 (646)
Q Consensus 544 nA~~ve~~G~G~~~i~-----~~~lt~e~L~~aI~~lL-dp-~~r~~A~~la~~l~~-~~--G~~~Av~~ie~ 606 (646)
.. .|.-. ... ..--+.++|.++|+.++ ++ .++++-++..+.+-. .+ ..+++++.|.+
T Consensus 303 ~~-----rg~~~-~~~~~~pg~~~~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~k 369 (369)
T PF04464_consen 303 KE-----RGFYF-DYEEDLPGPIVYNFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIFK 369 (369)
T ss_dssp TT-----SSBSS--TTTSSSS-EESSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHHH
T ss_pred hc-----cCCCC-chHhhCCCceeCCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 22 23322 110 01247899999999888 43 455556666666633 33 46777776653
No 167
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=73.18 E-value=26 Score=35.87 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=26.8
Q ss_pred ceEEEEecCCCC-ChHHHHHHHHHHHhCCCEEEEEeCCCchhh
Q 006412 191 LNIAILVVGTRG-DVQPFLAMAKRLQEFGHRVRLATHANFRTF 232 (646)
Q Consensus 191 mrIvi~~~gs~G-Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~ 232 (646)
|||++.= --| |---..+|+++|++.| +|+++++..-++-
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 6777543 334 3344678899999988 8999988765443
No 168
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.37 E-value=4 Score=42.63 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=63.8
Q ss_pred CcEEEe-ccCCcccccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHH---HHcCCCCCCcCCCCCCHHHH
Q 006412 493 DNIFLL-EDCPHDWLFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRV---QQKGLGPAPIPISQLTVENL 568 (646)
Q Consensus 493 ~nV~i~-~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~v---e~~G~G~~~i~~~~lt~e~L 568 (646)
+|..+. .+-...+++.++|++|-.+|- .+-.++-.|||+|.+|-.+-|+.-+-.. .-.|+.+..+. -.++.-
T Consensus 294 dnc~l~lsqqsfadiLH~adaalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~---~~aq~a 369 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADAALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR---PEAQAA 369 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHHHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC---CchhhH
Confidence 344432 344444556666666655443 2344667999999999999997654333 23577762221 122222
Q ss_pred HHHHHHhh-CHHHHHHHHH-HHHHhhcCCcHHHHHHHHH
Q 006412 569 SNAVRFML-QPEVKSRAME-LAKLIENEDGVAAAVDAFH 605 (646)
Q Consensus 569 ~~aI~~lL-dp~~r~~A~~-la~~l~~~~G~~~Av~~ie 605 (646)
..+.+++| |+++..+.+. =++++.+.+.+.+.++.+-
T Consensus 370 ~~~~q~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l~ 408 (412)
T COG4370 370 AQAVQELLGDPQRLTAIRHNGQRRIGQAGAARRIAEELG 408 (412)
T ss_pred HHHHHHHhcChHHHHHHHhcchhhccCcchHHHHHHHHH
Confidence 33334588 9998888873 4566666665566655543
No 169
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=71.19 E-value=27 Score=37.29 Aligned_cols=59 Identities=29% Similarity=0.375 Sum_probs=45.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhh--------hhhCCceEEE--cCCChH
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTF--------VRSAGVDFFP--LGGDPR 248 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~--------v~~~Gl~f~~--i~~~p~ 248 (646)
+--|+|+.+-+-|-..-.-.||+.|++.|++|.++..+.||.- .+..|.+++. .+.||.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA 207 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA 207 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH
Confidence 4446677778999999999999999999999999999988743 3456777765 445543
No 170
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=69.73 E-value=5.7 Score=40.18 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEec
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRG 481 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G 481 (646)
+..+.|+|.-......+.+.+...+.+++.+..+|+.-.
T Consensus 150 ~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~ 188 (229)
T PRK06732 150 PNITLVGFKLLVNVSKEELIKVARASLIKNQADYILAND 188 (229)
T ss_pred CCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 446889987664444567778777888889999888643
No 171
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.41 E-value=39 Score=34.74 Aligned_cols=96 Identities=25% Similarity=0.394 Sum_probs=57.1
Q ss_pred cceEEEEecCCCC----ChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC----C-ceEEEcCCChHHHHHHHhhcCCC
Q 006412 190 RLNIAILVVGTRG----DVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA----G-VDFFPLGGDPRVLAGYMARNKGL 260 (646)
Q Consensus 190 ~mrIvi~~~gs~G----Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~----G-l~f~~i~~~p~~l~~~~~~~~~~ 260 (646)
...|+|.+.++.. ...-+..|++.|.++|++|.++..++-++.++.. + -....+.+
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~--------------- 185 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAG--------------- 185 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcC---------------
Confidence 3346666654422 4567899999999999999988776544433321 0 00000000
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 261 IPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 261 ~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
.. -..++..++. +.|++|+. ..+..|+|..+|+|++.++.
T Consensus 186 ------~~--~l~e~~~li~-----------------~~~l~I~~--Dsg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 186 ------KT--SLRELAALLA-----------------RADLVVTN--DSGPMHLAAALGTPTVALFG 225 (279)
T ss_pred ------CC--CHHHHHHHHH-----------------hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 00 0123333333 35788875 24567899999999999875
No 172
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=69.15 E-value=50 Score=34.12 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=27.8
Q ss_pred CcceEEEEecCCCC-ChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 189 PRLNIAILVVGTRG-DVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 189 ~~mrIvi~~~gs~G-Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
.+|||++.-- -| |---..+|+++|++.| +|+++++..-++
T Consensus 4 ~~M~ILltND--DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCND--DGIEGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECC--CCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 4589887543 33 3344678899999888 799988765443
No 173
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=67.80 E-value=52 Score=35.06 Aligned_cols=99 Identities=23% Similarity=0.261 Sum_probs=56.0
Q ss_pred eEEEEecCCCC----ChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCc
Q 006412 192 NIAILVVGTRG----DVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGP 265 (646)
Q Consensus 192 rIvi~~~gs~G----Hv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~ 265 (646)
.|+|.+.++.. ...-+..|++.|.++|.+|.++..+.- ++.+++ +... .+.. .. ....
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~--i~~~-~~~~------------~~-~~l~ 246 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNE--IAQG-CQTP------------RV-TSLA 246 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHH--HHhh-CCCC------------cc-cccC
Confidence 46676654332 355688999999999999998876542 222221 0000 0000 00 0000
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 266 GEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 266 ~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
+..+ ..++..++. +.|++|++ ..+.+|+|..+|+|++.++.
T Consensus 247 g~~s--L~el~ali~-----------------~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 247 GKLT--LPQLAALID-----------------HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCCC--HHHHHHHHH-----------------hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 0000 223333443 45789986 56668999999999999875
No 174
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=67.37 E-value=32 Score=35.28 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=55.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCC-ChHHHHHHHhhcCCCCCCCcchH
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGG-DPRVLAGYMARNKGLIPSGPGEI 268 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~-~p~~l~~~~~~~~~~~~~~~~~i 268 (646)
+++|+++..-+-| ..||+.|.++|++|.+-+...+.. ....+.+...=+- +
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G~l~~---------------------- 53 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVGGFGG---------------------- 53 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEECCCCC----------------------
Confidence 4667776654444 478999999999988865444433 2223333321111 1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEE--ECCCccc----hHHHHHHhCCCEEEEEccCC
Q 006412 269 SIQRKQIKAIIESLLPACTDPDIETGVPFRSQAII--ANPPAYG----HAHVAEALGVPIHIFFTMPW 330 (646)
Q Consensus 269 ~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~II--ad~~~~~----~~~vA~~lGIP~v~~~t~p~ 330 (646)
...+.+++.. .+.++|| ++|+..- +..+|+.+|||++-+---.|
T Consensus 54 ---~~~l~~~l~~---------------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~ 103 (248)
T PRK08057 54 ---AEGLAAYLRE---------------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSW 103 (248)
T ss_pred ---HHHHHHHHHH---------------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCc
Confidence 2234444432 2567776 3444432 46789999999999865444
No 175
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=67.34 E-value=11 Score=39.98 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEc
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPL 243 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i 243 (646)
..+|||+|+-.|+.|- .+|..|++.||+|++++... .+.+...|+.....
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~ 52 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSV 52 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeC
Confidence 3568999998787764 56788999999999998766 45677778776543
No 176
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.21 E-value=39 Score=38.92 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=82.0
Q ss_pred CcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCC---------CCCCCCcEEEeccCCcccc---ccccc
Q 006412 444 EPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGK---------ITEVPDNIFLLEDCPHDWL---FPQCS 511 (646)
Q Consensus 444 pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~---------l~~~p~nV~i~~~vPq~~L---l~~a~ 511 (646)
.+||.+|.-....+|+.+ ++-++-|+..+--++|.......++ +.-.|+.|.+.+-++-.+- -+-+|
T Consensus 759 ~vvf~~FNqLyKidP~~l-~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaD 837 (966)
T KOG4626|consen 759 AVVFCNFNQLYKIDPSTL-QMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLAD 837 (966)
T ss_pred eEEEeechhhhcCCHHHH-HHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhh
Confidence 489999999888888754 5557778888878887754322111 1223677877776554332 22344
Q ss_pred EEEE---cCchhHHHHHHHhCCCeeecCCCCC-hHHHHHHHHHcCCCCCCcCCCCCCHHHHHH-HHHHhhCHHHHHHHH
Q 006412 512 AVVH---HGGAGTTATGLKAGCPTTVVPFFGD-QFFWGDRVQQKGLGPAPIPISQLTVENLSN-AVRFMLQPEVKSRAM 585 (646)
Q Consensus 512 ~vI~---HGG~gTt~EaL~~GvP~vivP~~~D-Q~~nA~~ve~~G~G~~~i~~~~lt~e~L~~-aI~~lLdp~~r~~A~ 585 (646)
+... -.|..|.++.|+.|+|||.+|.-.- -..-+..+...|+|- .|. -+.++-.+ +|+-..|.++..+.+
T Consensus 838 v~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-lia---k~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 838 VCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIA---KNREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHh---hhHHHHHHHHHHhhcCHHHHHHHH
Confidence 3331 2467899999999999999996432 223344456788884 332 23333333 333333655544443
No 177
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=65.01 E-value=12 Score=35.75 Aligned_cols=57 Identities=21% Similarity=0.178 Sum_probs=46.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGG 245 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~ 245 (646)
.+|||.+...|+-|--.-...|+..|++.|+.|-=+-.+..++-=...||+...+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccC
Confidence 579999999999999999999999999999998766555555544556788887763
No 178
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.92 E-value=67 Score=33.41 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
..+|.|+..|..| .++|..|+.+||+|+++..
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~ 34 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDI 34 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeC
Confidence 3578888777777 5688889999999999854
No 179
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=64.63 E-value=21 Score=41.04 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=46.8
Q ss_pred ccccccccEEEE---cCc-hhHHHHHHHhCCCeeecCCCCChHHHHHHH-HHc-CCCCCCcCCCC----CCHHHHHHHHH
Q 006412 504 DWLFPQCSAVVH---HGG-AGTTATGLKAGCPTTVVPFFGDQFFWGDRV-QQK-GLGPAPIPISQ----LTVENLSNAVR 573 (646)
Q Consensus 504 ~~Ll~~a~~vI~---HGG-~gTt~EaL~~GvP~vivP~~~DQ~~nA~~v-e~~-G~G~~~i~~~~----lt~e~L~~aI~ 573 (646)
.+++..||++|. +-| .-+.+||+++|+|+|.-...+= ..+..-+ ... ..|+..++... .+.++|++++.
T Consensus 469 ~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf-~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~ 547 (590)
T cd03793 469 EEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGF-GCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMY 547 (590)
T ss_pred HHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcch-hhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHH
Confidence 344788999997 334 4589999999999999765321 0122222 211 24653333221 35678888888
Q ss_pred HhhCHHHHHH
Q 006412 574 FMLQPEVKSR 583 (646)
Q Consensus 574 ~lLdp~~r~~ 583 (646)
.+++.+.+++
T Consensus 548 ~~~~~~~r~~ 557 (590)
T cd03793 548 EFCQLSRRQR 557 (590)
T ss_pred HHhCCcHHHH
Confidence 7774444443
No 180
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=64.46 E-value=7.8 Score=37.81 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=36.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVR 234 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~ 234 (646)
+||++...|+.|=+. ...+.+.|+++|++|+++.++..++++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 578998888877655 7999999999999999998888887775
No 181
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=64.37 E-value=8.9 Score=37.53 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=38.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHh-CCCEEEEEeCCCchhhhhh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQE-FGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~-rGH~Vt~~t~~~~~~~v~~ 235 (646)
++||++...|+-| ..=...+.++|.+ .||+|+++.+++...++..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 3689999999877 5668999999999 5999999999988888864
No 182
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=64.08 E-value=35 Score=35.07 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred ceEEEEecCCCC-ChHHHHHHHHHHHhCCCEEEEEeCCCchhhh
Q 006412 191 LNIAILVVGTRG-DVQPFLAMAKRLQEFGHRVRLATHANFRTFV 233 (646)
Q Consensus 191 mrIvi~~~gs~G-Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v 233 (646)
|||++.- --| |--=..+|++.|+ .+++|+++++..-++-+
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 5666643 334 4444677888998 99999999988765533
No 183
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=63.99 E-value=40 Score=35.47 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CCCee
Q 006412 458 PKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GCPTT 533 (646)
Q Consensus 458 p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP~v 533 (646)
..+.++.+++.+++.+..+++...... .... .+. ...+...+-..+|++|+-||=||+++++.. ++|++
T Consensus 19 ~~e~~~~i~~~L~~~g~~v~v~~~~~~--~~~~--~~~---~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~pil 91 (291)
T PRK02155 19 IAEPLESLAAFLAKRGFEVVFEADTAR--NIGL--TGY---PALTPEEIGARADLAVVLGGDGTMLGIGRQLAPYGVPLI 91 (291)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh--hcCc--ccc---cccChhHhccCCCEEEEECCcHHHHHHHHHhcCCCCCEE
Confidence 345567777788888888776432110 0000 000 001112233468999999999999999884 56777
Q ss_pred ecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHHH
Q 006412 534 VVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPEV 580 (646)
Q Consensus 534 ivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~~ 580 (646)
.+-.. .+|- ..+.+.+++.++|.++++.+|
T Consensus 92 GIn~G-------------~lGF----L~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 92 GINHG-------------RLGF----ITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred EEcCC-------------Cccc----cccCCHHHHHHHHHHHHcCCc
Confidence 66310 1232 235778888888888874443
No 184
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=63.42 E-value=9.5 Score=37.69 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~ 235 (646)
.+||++...|+.|=+.-...+.++|+++||+|+++.++...+++..
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~ 50 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTR 50 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhh
Confidence 4679988888766554478999999999999999988877666543
No 185
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=63.26 E-value=49 Score=34.93 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.9
Q ss_pred cccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 298 RSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 298 ~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
+.|++|++ ..+..|+|..+|+|++.+|.
T Consensus 253 ~a~l~I~n--DSGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 253 GAKAVVSV--DTGLSHLTAALDRPNITLYG 280 (322)
T ss_pred hCCEEEec--CCcHHHHHHHhCCCEEEEEC
Confidence 46889986 45567999999999999875
No 186
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=63.08 E-value=15 Score=34.01 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=45.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~ 244 (646)
.+.+|++.+.++-+|-.-..-++..|+.+|++|.++... .+.+.+.+.+.++.-+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 567899999999999999999999999999999998643 34555556666666554
No 187
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=62.28 E-value=39 Score=35.83 Aligned_cols=105 Identities=25% Similarity=0.371 Sum_probs=67.9
Q ss_pred HHHHHh---cCCeEEEEecCC--CCC---CC-----CCCC-CcEEEec-cCCccc---ccccccEEEEcC----chhHHH
Q 006412 466 LEALRD---TGQRGIIDRGWG--DLG---KI-----TEVP-DNIFLLE-DCPHDW---LFPQCSAVVHHG----GAGTTA 523 (646)
Q Consensus 466 ~~Al~~---~g~r~Iv~~G~~--~~~---~l-----~~~p-~nV~i~~-~vPq~~---Ll~~a~~vI~HG----G~gTt~ 523 (646)
++++.+ .+.++++-.|.+ +.+ .+ +-.+ +++.++. ++|.++ ++.+||+.|... |.||+.
T Consensus 165 L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~ 244 (322)
T PRK02797 165 LRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLC 244 (322)
T ss_pred HHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHH
Confidence 455533 456788877763 211 11 1123 7888764 888665 489999987654 889999
Q ss_pred HHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHh
Q 006412 524 TGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFM 575 (646)
Q Consensus 524 EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~l 575 (646)
-.+..|+|.++- .+-++|.. +.+.|+-+ ....+.++...+.++=+.+
T Consensus 245 lLi~~G~~v~l~---r~n~fwqd-l~e~gv~V-lf~~d~L~~~~v~e~~rql 291 (322)
T PRK02797 245 LLIQLGKPVVLS---RDNPFWQD-LTEQGLPV-LFTGDDLDEDIVREAQRQL 291 (322)
T ss_pred HHHHCCCcEEEe---cCCchHHH-HHhCCCeE-EecCCcccHHHHHHHHHHH
Confidence 999999999975 34445544 34445554 2466778887777764443
No 188
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=61.42 E-value=23 Score=33.68 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.7
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEE
Q 006412 203 DVQPFLAMAKRLQE-FGHRVRLA 224 (646)
Q Consensus 203 Hv~P~laLAk~L~~-rGH~Vt~~ 224 (646)
|.+..-||+++|++ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 78889999999988 55544444
No 189
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=61.20 E-value=66 Score=33.16 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=25.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
|||++.---+. |---..+|+++|++ +|+|+++++..-++
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 67776543322 33446788899975 68999998875443
No 190
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=61.17 E-value=26 Score=29.58 Aligned_cols=32 Identities=38% Similarity=0.646 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceE
Q 006412 207 FLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDF 240 (646)
Q Consensus 207 ~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f 240 (646)
++.+++.|.+.|+++ ++|.. -.+++++.|++.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLREAGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHHCCCcc
Confidence 468999999999988 46654 467788899876
No 191
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=60.71 E-value=65 Score=33.21 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=25.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
|||++.=--+. |---..+|+++|++ +|+|+++++..-++
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 67766543221 22237788999975 68999998876544
No 192
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.55 E-value=43 Score=37.44 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=31.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC--chhhhhhCCceEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN--FRTFVRSAGVDFF 241 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~--~~~~v~~~Gl~f~ 241 (646)
.++|+|+..|..| +-++|+.|+++|++|+..=... ..+.+++.|++++
T Consensus 7 ~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~ 56 (461)
T PRK00421 7 IKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIF 56 (461)
T ss_pred CCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEe
Confidence 4578888888766 3338999999999998752211 1122444566664
No 193
>PRK05920 aromatic acid decarboxylase; Validated
Probab=59.62 E-value=13 Score=37.03 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=38.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~ 235 (646)
.+||++...|+.+= .=.+.+.+.|.+.||+|+++.+.....++..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 47898888887655 5789999999999999999999888888863
No 194
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=59.51 E-value=1.1e+02 Score=32.21 Aligned_cols=98 Identities=17% Similarity=0.272 Sum_probs=55.4
Q ss_pred cceEEEEecCCCC----ChHHHHHHHHHHHhCCCEEEEE-eCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCC
Q 006412 190 RLNIAILVVGTRG----DVQPFLAMAKRLQEFGHRVRLA-THANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSG 264 (646)
Q Consensus 190 ~mrIvi~~~gs~G----Hv~P~laLAk~L~~rGH~Vt~~-t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~ 264 (646)
+..|++.+.++.. -..-+.+|++.|.++|.++.+. +.+.-++..+.. .+ .++.. .+.
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i-~~--~~~~~------------~l~--- 240 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERI-AE--ALPGA------------VVL--- 240 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHH-Hh--hCCCC------------eec---
Confidence 4467787765432 3456889999999889988876 333322222210 00 00000 000
Q ss_pred cchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccchHHHHHHhCCCEEEEEc
Q 006412 265 PGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 265 ~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~~~~vA~~lGIP~v~~~t 327 (646)
+..+ ..++..++. +.|++|++ ..+.+|+|..+|+|++.++.
T Consensus 241 -g~~s--L~el~ali~-----------------~a~l~I~~--DSgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 241 -PKMS--LAEVAALLA-----------------GADAVVGV--DTGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred -CCCC--HHHHHHHHH-----------------cCCEEEeC--CChHHHHHHHcCCCEEEEEC
Confidence 0000 223333333 45788886 45567999999999999874
No 195
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=59.45 E-value=63 Score=28.66 Aligned_cols=47 Identities=21% Similarity=0.463 Sum_probs=33.1
Q ss_pred EEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEc
Q 006412 194 AILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPL 243 (646)
Q Consensus 194 vi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i 243 (646)
+|++++.. +=.-++.+++.|.+.|++| ++| +...+++.+.|++...+
T Consensus 3 vlisv~~~-dk~~~~~~a~~l~~~G~~i-~aT-~gTa~~L~~~gi~~~~v 49 (116)
T cd01423 3 ILISIGSY-SKPELLPTAQKLSKLGYKL-YAT-EGTADFLLENGIPVTPV 49 (116)
T ss_pred EEEecCcc-cchhHHHHHHHHHHCCCEE-EEc-cHHHHHHHHcCCCceEe
Confidence 34444443 5567889999999999988 344 45666777889876655
No 196
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.03 E-value=45 Score=35.60 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=30.6
Q ss_pred cceEEEEec-CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 190 RLNIAILVV-GTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 190 ~mrIvi~~~-gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
++||+|++. |+-|--.-.-|+|-.|++.|.+|.+++.+
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD 39 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTD 39 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 368887775 57788888888999999999998888544
No 197
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=57.90 E-value=21 Score=43.03 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=62.1
Q ss_pred ccCCcccc---cccccEEEEc---Cchh-HHHHHHHhCCC---eeecCCCCChHHHHHHHHHcCC-CCCCcCCCCCCHHH
Q 006412 499 EDCPHDWL---FPQCSAVVHH---GGAG-TTATGLKAGCP---TTVVPFFGDQFFWGDRVQQKGL-GPAPIPISQLTVEN 567 (646)
Q Consensus 499 ~~vPq~~L---l~~a~~vI~H---GG~g-Tt~EaL~~GvP---~vivP~~~DQ~~nA~~ve~~G~-G~~~i~~~~lt~e~ 567 (646)
.++|..++ +..+|+||.- -|.| +..|++++|+| ++|+.-++- .+.. .|. |+ -....+.++
T Consensus 362 ~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~~---l~~~al---lVnP~D~~~ 432 (797)
T PLN03063 362 CSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQS---LGAGAL---LVNPWNITE 432 (797)
T ss_pred CCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chhh---hcCCeE---EECCCCHHH
Confidence 35666665 8999999964 4665 66799999999 555553321 1111 242 33 234678999
Q ss_pred HHHHHHHhh--CH-HHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 568 LSNAVRFML--QP-EVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 568 L~~aI~~lL--dp-~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
++++|.++| ++ +.+++.+++.+.+...+ +..-++.|.+.|
T Consensus 433 lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~-~~~Wa~~fl~~l 475 (797)
T PLN03063 433 VSSAIKEALNMSDEERETRHRHNFQYVKTHS-AQKWADDFMSEL 475 (797)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhCC-HHHHHHHHHHHH
Confidence 999999988 34 45555666666665555 334444443333
No 198
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=57.08 E-value=22 Score=40.00 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=43.8
Q ss_pred CCCcceEEEEecCCCCChHHH------------HHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 187 SIPRLNIAILVVGTRGDVQPF------------LAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 187 ~~~~mrIvi~~~gs~GHv~P~------------laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
....+||+|...|++-.+.|. .+||+++..+|++|++++.+.... ...|++++++.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~--~p~~v~~i~V~ 320 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA--DPQGVKVIHVE 320 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC--CCCCceEEEec
Confidence 356789999999999888886 899999999999999998664211 23567776664
No 199
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=56.73 E-value=17 Score=35.18 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=35.2
Q ss_pred eEEEEecCCCCChHH-HHHHHHHHH-hCCCEEEEEeCCCchhhhhhC
Q 006412 192 NIAILVVGTRGDVQP-FLAMAKRLQ-EFGHRVRLATHANFRTFVRSA 236 (646)
Q Consensus 192 rIvi~~~gs~GHv~P-~laLAk~L~-~rGH~Vt~~t~~~~~~~v~~~ 236 (646)
||++...|+ ||... .+.+.++|+ ++||+|+++.+++.+++++-.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~ 46 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWY 46 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHH
Confidence 577777787 77755 889999998 569999999998888776643
No 200
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=56.53 E-value=1.1e+02 Score=26.73 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEc
Q 006412 202 GDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPL 243 (646)
Q Consensus 202 GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i 243 (646)
.+=.-++.+++.|.+.|+++ ++|. ....++++.|+.+..+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~aT~-gT~~~l~~~gi~~~~v 49 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VATE-GTAKYLQEAGIPVEVV 49 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EEch-HHHHHHHHcCCeEEEE
Confidence 35667899999999999988 3444 4666788889886555
No 201
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.47 E-value=57 Score=34.58 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCCCCCC-CC---CcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CC
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWGDLGKITE-VP---DNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GC 530 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~-~p---~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----Gv 530 (646)
.++.+.+.+.+++.+..+++...... .+.. .+ ..+-+..+.+...+...+|++|+=||=||++.+... ++
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~aar~~~~~~~ 97 (306)
T PRK03372 20 TEAARRVAKQLGDAGIGVRVLDAEAV--DLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTILRAAELARAADV 97 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEEeechhh--hhcccccccccccccccccchhhcccCCCEEEEEcCCHHHHHHHHHhccCCC
Confidence 45566667778888888776532111 0100 00 000000011112334568999999999999999874 78
Q ss_pred CeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 531 PTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 531 P~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
|++.+... .+|- ..+..++++.+++.++++.+
T Consensus 98 PilGIN~G-------------~lGF----L~~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 98 PVLGVNLG-------------HVGF----LAEAEAEDLDEAVERVVDRD 129 (306)
T ss_pred cEEEEecC-------------CCce----eccCCHHHHHHHHHHHHcCC
Confidence 88887541 1342 23567888889998888443
No 202
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=56.21 E-value=14 Score=38.70 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=35.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFP 242 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~ 242 (646)
|||+|+..|+.| ..+|..|++.||+|++++.+...+.+.+.|+....
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~ 47 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRS 47 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEe
Confidence 788888777766 46788899999999999875445556677766543
No 203
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=56.04 E-value=1.2e+02 Score=31.97 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
-+...|.|.-+|+-|--.-.=+|+++|.++||+|-++.-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAV 87 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV 87 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEE
Confidence 455678899999999999999999999999999999853
No 204
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=55.90 E-value=1e+02 Score=31.93 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=26.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
|||++.---+. |---+.+|+++|++.| +|+++.+..-++
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 56666443222 4455788999999887 799988765443
No 205
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=55.88 E-value=16 Score=40.29 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=29.2
Q ss_pred eEEEEecC-CCCChHHHHHHHHHHHhCCCEEEEE-eCCCc
Q 006412 192 NIAILVVG-TRGDVQPFLAMAKRLQEFGHRVRLA-THANF 229 (646)
Q Consensus 192 rIvi~~~g-s~GHv~P~laLAk~L~~rGH~Vt~~-t~~~~ 229 (646)
+|+|.... +.|-..-.+.|.++|++||++|.=+ +.+++
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY 41 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY 41 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 45555444 5688999999999999999999876 55554
No 206
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=55.85 E-value=69 Score=32.97 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=26.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
|||++.---+. |---+.+|+++|++. |+|+++++..-++
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCc
Confidence 56666442221 334477899999988 7999998875543
No 207
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=54.90 E-value=13 Score=38.67 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=32.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC-CCchhhhhhCCceE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH-ANFRTFVRSAGVDF 240 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~-~~~~~~v~~~Gl~f 240 (646)
|||+|+..|+.| ..+|..|.+.||+|++++. ....+.+.+.|+..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~ 46 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNENGLRL 46 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcc
Confidence 688887777666 5678889999999999986 34444555556544
No 208
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=54.78 E-value=15 Score=35.76 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=35.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~ 235 (646)
||++...|+-|-+. ...+.+.|+++|++|+++.+++...++..
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 57777777766654 48899999999999999999998888753
No 209
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=54.15 E-value=19 Score=36.50 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=38.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG 237 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G 237 (646)
||++...|+.+=+.-.+.+.+.|+++ ||+|+++-+++..+++...+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~ 48 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYG 48 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhh
Confidence 57777777766667899999999999 99999999988888887654
No 210
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.12 E-value=89 Score=34.67 Aligned_cols=64 Identities=27% Similarity=0.411 Sum_probs=49.4
Q ss_pred CCCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh--------hhhhCCceEEEcCC--ChHHH
Q 006412 187 SIPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT--------FVRSAGVDFFPLGG--DPRVL 250 (646)
Q Consensus 187 ~~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~--------~v~~~Gl~f~~i~~--~p~~l 250 (646)
..++..|+++..-+.|-..-.-.||+.|+++|+.|-+++.+.++. ..+..|++||+.+. +|.++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEI 170 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHH
Confidence 345666777777788999999999999999999999998876653 33467899999842 45444
No 211
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=53.62 E-value=18 Score=35.46 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=35.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVR 234 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~ 234 (646)
||++...|+.|=+.-.+.+.++|++.|++|+++.++....+..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~~ 44 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDT 44 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHHH
Confidence 6888888888877777799999999999999998777665444
No 212
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=53.43 E-value=67 Score=33.01 Aligned_cols=28 Identities=36% Similarity=0.444 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
|||+++..-+-| ..|++.|.++|+ |.+-
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~s 28 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVS 28 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEE
Confidence 788887655544 479999999998 6654
No 213
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=52.84 E-value=58 Score=34.35 Aligned_cols=100 Identities=18% Similarity=0.177 Sum_probs=63.0
Q ss_pred CcccccccccChHHHHHHHHHhcccCCCccEEEEccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcceEEEEecCCCC
Q 006412 123 PRHDLKLDRLSDREKKKLIVELVRIQNDGTVEVDLDKSAPFLEFQPVEGPPIILDDTSFSDSKKSIPRLNIAILVVGTRG 202 (646)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mrIvi~~~gs~G 202 (646)
...+.+.+++ ++.++++....+..-.||.+-+....+....++-... ..+..||-++..-++-
T Consensus 93 ~~~~~~i~~~-~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A----------------~~~~k~~~V~VtESRP 155 (301)
T COG1184 93 KAAQEFIDRV-EKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTA----------------ADRGKRFKVIVTESRP 155 (301)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHh----------------hhcCCceEEEEEcCCC
Confidence 3445666666 7788888888888889999998876544332221100 1122234333333332
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceE
Q 006412 203 DVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDF 240 (646)
Q Consensus 203 Hv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f 240 (646)
-.+ ...+|++|++.|.+|++++.....-++...+.-+
T Consensus 156 ~~e-G~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~Vi 192 (301)
T COG1184 156 RGE-GRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVL 192 (301)
T ss_pred cch-HHHHHHHHHHcCCceEEEechHHHHHHHhCCEEE
Confidence 222 6678999999999999998887766666655333
No 214
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.78 E-value=1.6e+02 Score=30.18 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=25.5
Q ss_pred cccEE-EECCCccc-hHHHHHHhCCCEEEEEccCCCC
Q 006412 298 RSQAI-IANPPAYG-HAHVAEALGVPIHIFFTMPWTP 332 (646)
Q Consensus 298 ~pD~I-Iad~~~~~-~~~vA~~lGIP~v~~~t~p~~~ 332 (646)
.||++ |.||..=- ++.=|.++|||++.+.-..+.|
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 48985 57775533 5677899999999987665544
No 215
>PRK14099 glycogen synthase; Provisional
Probab=52.26 E-value=21 Score=40.45 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=29.3
Q ss_pred CcceEEEEec--------CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 189 PRLNIAILVV--------GTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 189 ~~mrIvi~~~--------gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
++|||++++. |+.||| .-+|.++|+++||+|+++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCC
Confidence 5699999884 344455 567889999999999999874
No 216
>PRK14098 glycogen synthase; Provisional
Probab=51.84 E-value=20 Score=40.57 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=29.2
Q ss_pred CcceEEEEec--------CCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 189 PRLNIAILVV--------GTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 189 ~~mrIvi~~~--------gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
|+|||++++. |+.||| .-+|.++|+++||+|+++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCC
Confidence 4599999884 344455 567889999999999999874
No 217
>PRK06849 hypothetical protein; Provisional
Probab=51.69 E-value=67 Score=34.99 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=27.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN 228 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~ 228 (646)
.+|+|+|+..++ ...+.+++.|.+.||+|.++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457888864332 368999999999999999986553
No 218
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=51.49 E-value=1.8e+02 Score=30.50 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=37.6
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHh--CCCEEEEE-e-CCCchhhhhhCCceEEEcC
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQE--FGHRVRLA-T-HANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~--rGH~Vt~~-t-~~~~~~~v~~~Gl~f~~i~ 244 (646)
.++|||+++..|+ |+- +-+|.++.+. .+++|.++ + +++....+++.|++++.+.
T Consensus 87 ~~~~ri~vl~Sg~-g~n--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 87 AARPKVLIMVSKF-DHC--LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccCceEEEEEcCC-ccc--HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeC
Confidence 3578999999986 432 3344444443 36898887 4 4567778888999988764
No 219
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=51.24 E-value=92 Score=33.95 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=26.6
Q ss_pred CcceEEEEe-cCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 189 PRLNIAILV-VGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 189 ~~mrIvi~~-~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
..++|+|+. .|..|. .+|+.|+++||+|++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 347888876 676665 5789999999999998643
No 220
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=51.03 E-value=2.4e+02 Score=32.07 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=65.5
Q ss_pred CcEEEeccCCcccc---cccccEEEE---cCchhHHH-HHHHhCC----CeeecCCCCChHHHHHHHHHcCCCCCCcCCC
Q 006412 493 DNIFLLEDCPHDWL---FPQCSAVVH---HGGAGTTA-TGLKAGC----PTTVVPFFGDQFFWGDRVQQKGLGPAPIPIS 561 (646)
Q Consensus 493 ~nV~i~~~vPq~~L---l~~a~~vI~---HGG~gTt~-EaL~~Gv----P~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~ 561 (646)
+-+++.+.+|+.++ +..+|+++. .-|.|.++ |.++++. |+|+=-+.|= | +...-++ -..
T Consensus 362 pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa----a---~~l~~Al---lVN 431 (487)
T TIGR02398 362 PLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA----A---VELKGAL---LTN 431 (487)
T ss_pred cEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccc----h---hhcCCCE---EEC
Confidence 33667788998886 789999985 56888665 9999877 4443332221 1 2332233 345
Q ss_pred CCCHHHHHHHHHHhh-C--HHHHHHHHHHHHHhhcCCcHH
Q 006412 562 QLTVENLSNAVRFML-Q--PEVKSRAMELAKLIENEDGVA 598 (646)
Q Consensus 562 ~lt~e~L~~aI~~lL-d--p~~r~~A~~la~~l~~~~G~~ 598 (646)
..+.++++++|..+| . .+-+++.+++.+.+...+-..
T Consensus 432 P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~ 471 (487)
T TIGR02398 432 PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQR 471 (487)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHH
Confidence 689999999999998 2 467778888888777765433
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.72 E-value=2e+02 Score=32.00 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=46.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch--------hhhhhCCceEEEcCCChHHHHHHH
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR--------TFVRSAGVDFFPLGGDPRVLAGYM 254 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~--------~~v~~~Gl~f~~i~~~p~~l~~~~ 254 (646)
-.|+|+..++-|=..-...||..|..+|.+|.+++.+.++ ...+..|++++... ++..+...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHH
Confidence 4567777778899999999999999999999999887664 23345678877654 555554433
No 222
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.55 E-value=80 Score=33.47 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccC---CcccccccccEEEEcCchhHHHHHHHh----CCC
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDC---PHDWLFPQCSAVVHHGGAGTTATGLKA----GCP 531 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~v---Pq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP 531 (646)
.++.+.+.+.+++.|..+++.......-.... +.+.....-. +...+-..+|++|+=||=||++.+... ++|
T Consensus 16 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~aar~~~~~~iP 94 (305)
T PRK02649 16 VRTAEELQDKLEAAGWEVVRASSSGGILGYAN-PDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTVLSAARQLAPCGIP 94 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcCccc-cccccccccccccChhhcccCcCEEEEEeCcHHHHHHHHHhcCCCCc
Confidence 34556667778888888776421110000000 0000000001 112233469999999999999999875 778
Q ss_pred eeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 532 TTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 532 ~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
++.+-.. .+|- ..+.+.+++.+++.++++.+
T Consensus 95 ilGIN~G-------------~lGF----Lt~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 95 LLTINTG-------------HLGF----LTEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred EEEEeCC-------------CCcc----cccCCHHHHHHHHHHHHcCC
Confidence 8877431 2332 23567888999998888433
No 223
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=50.24 E-value=47 Score=30.57 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC----CCchhhhhhCCceEEEcCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH----ANFRTFVRSAGVDFFPLGG 245 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~----~~~~~~v~~~Gl~f~~i~~ 245 (646)
++.||++...+.-+|-.----++..|+..|++|..... +.+.+.+.+.+..++-+.+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 36799999999999999988889999999999998754 3455555667878877754
No 224
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=49.67 E-value=14 Score=39.29 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=36.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFP 242 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~ 242 (646)
+|||+|+..|..|. .+|..|+++||+|+++......+.+++.|+.+..
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~ 49 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDELRAHGLTLTD 49 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHHHhcCceeec
Confidence 47899988877764 6788899999999999765444556666766543
No 225
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=49.53 E-value=57 Score=36.43 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcC-CeEEEEecCC---CCCCCCCCCCcEEEec-cCCc--ccccccccEEE--EcC--chhHHHHHHH
Q 006412 459 KKTTEIILEALRDTG-QRGIIDRGWG---DLGKITEVPDNIFLLE-DCPH--DWLFPQCSAVV--HHG--GAGTTATGLK 527 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g-~r~Iv~~G~~---~~~~l~~~p~nV~i~~-~vPq--~~Ll~~a~~vI--~HG--G~gTt~EaL~ 527 (646)
...++.+...+++.+ +.+=+..+.. .+..+... +|+.+.+ +.++ .+++..|++.+ +|| -..++.||+.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 445566555555554 4443321111 11122233 6777665 4552 34588888875 454 4689999999
Q ss_pred hCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhcC
Q 006412 528 AGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIENE 594 (646)
Q Consensus 528 ~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~~ 594 (646)
+|+|++..=..... ...+.. |- .++ .-+.+++.++|+.+| +++..+.+...++.....
T Consensus 370 ~G~pI~afd~t~~~---~~~i~~---g~-l~~--~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~ 428 (438)
T TIGR02919 370 YNLLILGFEETAHN---RDFIAS---EN-IFE--HNEVDQLISKLKDLLNDPNQFRELLEQQREHAND 428 (438)
T ss_pred cCCcEEEEecccCC---cccccC---Cc-eec--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc
Confidence 99999987433111 111221 42 233 456899999999999 886555555555444443
No 226
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.08 E-value=79 Score=33.20 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CCCe
Q 006412 457 DPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GCPT 532 (646)
Q Consensus 457 ~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP~ 532 (646)
...++.+.+.+.+++.+..+++..... ..+. .+. .+...+...+|++|+-||=||++.+... ++|+
T Consensus 22 ~~~~~~~~i~~~l~~~g~~~~~~~~~~--~~~~-~~~-------~~~~~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~Pi 91 (287)
T PRK14077 22 SLDKEILKLQKILSIYKVEILLEKESA--EILD-LPG-------YGLDELFKISDFLISLGGDGTLISLCRKAAEYDKFV 91 (287)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchh--hhhc-ccc-------cchhhcccCCCEEEEECCCHHHHHHHHHhcCCCCcE
Confidence 334556666777777888877642111 0010 000 0112334579999999999999988763 6787
Q ss_pred eecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhC
Q 006412 533 TVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQ 577 (646)
Q Consensus 533 vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLd 577 (646)
+.+-.. .+|- ..+.+.+++.+++.++++
T Consensus 92 lGIN~G-------------~lGF----Lt~~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 92 LGIHAG-------------HLGF----LTDITVDEAEKFFQAFFQ 119 (287)
T ss_pred EEEeCC-------------Cccc----CCcCCHHHHHHHHHHHHc
Confidence 776321 1332 235677888888888773
No 227
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=49.04 E-value=48 Score=29.08 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEF 217 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~r 217 (646)
|||+++-.|+|-| |||..|.+.
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s 22 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQS 22 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTC
T ss_pred CEEEEECCCHHHH-----HHHHHHhcC
Confidence 8999999999999 799999864
No 228
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.03 E-value=80 Score=33.32 Aligned_cols=101 Identities=19% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCC-CCcEEEeccCCcccccccccEEEEcCchhHHHHHHH----hCCCee
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWGDLGKITEV-PDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLK----AGCPTT 533 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~-p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~----~GvP~v 533 (646)
.+..+.+.+.|++.+..+++.......+..... ..+. ...+...+-..+|++|+=||=||++.+.. .++|++
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~Pil 96 (296)
T PRK04539 20 QDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGC---HIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPII 96 (296)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccchhccccccc---cccchhhcCcCCCEEEEECCcHHHHHHHHHhcccCCCEE
Confidence 445666677788888887764211000000000 0010 11122233346999999999999999975 367888
Q ss_pred ecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 534 VVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 534 ivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
.+-.. .+|- ..+++.+++.+++..+++.+
T Consensus 97 GIN~G-------------~lGF----L~~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 97 GINQG-------------HLGF----LTQIPREYMTDKLLPVLEGK 125 (296)
T ss_pred EEecC-------------CCeE----eeccCHHHHHHHHHHHHcCC
Confidence 77431 1342 23577888999998888443
No 229
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=48.80 E-value=72 Score=35.53 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=22.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
||-|+..|+-| |-+||+.|+++|+.|+..
T Consensus 1 ~~hfigigG~g----m~~la~~l~~~G~~V~~~ 29 (448)
T TIGR01081 1 HIHILGICGTF----MGGLAMIAKQLGHEVTGS 29 (448)
T ss_pred CEEEEEECHHh----HHHHHHHHHhCCCEEEEE
Confidence 35566666644 889999999999999875
No 230
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.75 E-value=99 Score=32.58 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CCCe
Q 006412 457 DPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GCPT 532 (646)
Q Consensus 457 ~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP~ 532 (646)
...+..+.+.+.+++.+..+.+..... ..+ +.+- ...++...+-..+|++|+=||=||+++++.. ++|+
T Consensus 17 ~a~e~~~~i~~~L~~~giev~v~~~~~--~~~---~~~~--~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~Pv 89 (295)
T PRK01231 17 SVVETLRRLKDFLLDRGLEVILDEETA--EVL---PGHG--LQTVSRKLLGEVCDLVIVVGGDGSLLGAARALARHNVPV 89 (295)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchh--hhc---Cccc--ccccchhhcccCCCEEEEEeCcHHHHHHHHHhcCCCCCE
Confidence 334566666777888888876643211 011 1110 0112222233468999999999999999863 6688
Q ss_pred eecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCH
Q 006412 533 TVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQP 578 (646)
Q Consensus 533 vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp 578 (646)
+.+... .+|- ..+.+++++.++|..+++.
T Consensus 90 lgin~G-------------~lGF----l~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 90 LGINRG-------------RLGF----LTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred EEEeCC-------------cccc----cccCCHHHHHHHHHHHHcC
Confidence 877541 2342 2467789999999988843
No 231
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.40 E-value=89 Score=34.95 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
..||+|+-.|..| +++|+.|+++|++|+..
T Consensus 14 ~~~i~v~G~G~sG-----~a~a~~L~~~G~~V~~~ 43 (458)
T PRK01710 14 NKKVAVVGIGVSN-----IPLIKFLVKLGAKVTAF 43 (458)
T ss_pred CCeEEEEcccHHH-----HHHHHHHHHCCCEEEEE
Confidence 3478887777655 49999999999999886
No 232
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=47.81 E-value=97 Score=37.00 Aligned_cols=103 Identities=12% Similarity=0.181 Sum_probs=63.7
Q ss_pred EEEeccCCcccc---cccccEEEEc---Cc-hhHHHHHHHhCCC---eeecCCC-CChHHHHHHHHHcCCCCCCcCCCCC
Q 006412 495 IFLLEDCPHDWL---FPQCSAVVHH---GG-AGTTATGLKAGCP---TTVVPFF-GDQFFWGDRVQQKGLGPAPIPISQL 563 (646)
Q Consensus 495 V~i~~~vPq~~L---l~~a~~vI~H---GG-~gTt~EaL~~GvP---~vivP~~-~DQ~~nA~~ve~~G~G~~~i~~~~l 563 (646)
+++.+++++.++ +..+|+|+.- -| -.+..|++++|+| .+++.-+ +.-. .+ .-|+ .+ ...
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l---~~~l-lv--~P~ 413 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----EL---AEAL-LV--NPN 413 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH----Hh---CcCe-EE--CCC
Confidence 455678898876 8999999974 24 3578899999876 3333322 2211 11 1254 33 356
Q ss_pred CHHHHHHHHHHhh-C--HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhc
Q 006412 564 TVENLSNAVRFML-Q--PEVKSRAMELAKLIENEDGVAAAVDAFHRHL 608 (646)
Q Consensus 564 t~e~L~~aI~~lL-d--p~~r~~A~~la~~l~~~~G~~~Av~~ie~~L 608 (646)
+.++++++|.++| . .+.+++.+++.+.+.. .-.+.-++.+.+.+
T Consensus 414 d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-~~~~~w~~~~l~~l 460 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEEEQRERMQAMQERLRR-YDVHKWASDFLDEL 460 (726)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH
Confidence 7999999999988 3 3555666666666543 33455555544444
No 233
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=47.56 E-value=51 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=26.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE-eCCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA-THAN 228 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~-t~~~ 228 (646)
++|||+++-.|++-| +|++.|++.++-+.++ .+.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 459999998888777 8999999988554444 4444
No 234
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=46.83 E-value=44 Score=27.71 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=30.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
+.-++++..|...|...+-.+|+.|.+.|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35577777788889999999999999999998865
No 235
>PRK09620 hypothetical protein; Provisional
Probab=46.77 E-value=24 Score=35.71 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=30.9
Q ss_pred hHHHhHhc-CCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEe
Q 006412 434 NFVQWIQR-GPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDR 480 (646)
Q Consensus 434 ~l~~wL~~-~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~ 480 (646)
++...+.+ .+..+.|+|--......+++++...+.+++.+..+|+.-
T Consensus 134 dIl~~l~~~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN 181 (229)
T PRK09620 134 KVLKQIKQWDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIAN 181 (229)
T ss_pred HHHHHHHhhCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 33344432 234688888766544456777777788888888888763
No 236
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=46.67 E-value=11 Score=35.67 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=26.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN 228 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~ 228 (646)
||.++..|.+|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577777777775 89999999999999998764
No 237
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=46.66 E-value=1.4e+02 Score=32.32 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=79.9
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHh---cCCeEEEEecCCCCC-C----C----CC-CC-CcEEEe-ccCCcccc---
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRD---TGQRGIIDRGWGDLG-K----I----TE-VP-DNIFLL-EDCPHDWL--- 506 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~---~g~r~Iv~~G~~~~~-~----l----~~-~p-~nV~i~-~~vPq~~L--- 506 (646)
.+.|-.|-.+....+.+ + +++++.+ .+.++++-.|.++.. . + .+ .+ +++.++ +++|.++-
T Consensus 185 ~ltILvGNSgd~sNnHi-e-aL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~l 262 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHI-E-ALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLAL 262 (360)
T ss_pred ceEEEEcCCCCCCccHH-H-HHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHH
Confidence 44455554433332322 2 2445543 357788877775321 1 1 11 23 578765 58987764
Q ss_pred cccccEEEEc----CchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh
Q 006412 507 FPQCSAVVHH----GGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML 576 (646)
Q Consensus 507 l~~a~~vI~H----GG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL 576 (646)
+.+||+.|.. =|.|++.-.|..|+|+++- .+-++|-.. .+.|+-+ ....++++...++++=+.+.
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l-~~~~ipV-lf~~d~L~~~~v~ea~rql~ 331 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDL-KEQGIPV-LFYGDELDEALVREAQRQLA 331 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHH-HhCCCeE-EeccccCCHHHHHHHHHHHh
Confidence 8999998865 4889999999999999964 444555444 4446654 34557899999999888775
No 238
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=46.40 E-value=42 Score=29.60 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
|+++...+..-|-.-...|+..|+++||+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 78889999999999999999999999999999833
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=45.04 E-value=27 Score=35.97 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=39.4
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~ 235 (646)
...+++|+..++.|=..=..|||++|.++|++|+|++.+.+...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 56689998888889777789999999999999999998877665554
No 240
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=44.98 E-value=30 Score=36.59 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=42.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSAG 237 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~G 237 (646)
|||+|+-.+..||+.-..++.+.|++. +.+|++++.+.++..++...
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p 49 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHP 49 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCC
Confidence 799999999999999999999999986 99999999998888776543
No 241
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=44.45 E-value=84 Score=30.66 Aligned_cols=96 Identities=22% Similarity=0.233 Sum_probs=46.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeC-CCchhhhhhC---CceEEEcCCChHHHHHHHhhcCCCCCCCc
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATH-ANFRTFVRSA---GVDFFPLGGDPRVLAGYMARNKGLIPSGP 265 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~-~~~~~~v~~~---Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~ 265 (646)
-|-|. ..+-|-+.-...|+++|+++ |++|.+-|. +...+.+++. .+...-++-|.
T Consensus 23 ~iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~------------------ 83 (186)
T PF04413_consen 23 LIWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF------------------ 83 (186)
T ss_dssp -EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS------------------
T ss_pred cEEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC------------------
Confidence 34444 56789999999999999987 898888754 4444444332 22222233220
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccc--hHHHHHHhCCCEEEEEc
Q 006412 266 GEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYG--HAHVAEALGVPIHIFFT 327 (646)
Q Consensus 266 ~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~--~~~vA~~lGIP~v~~~t 327 (646)
...++.+++. ++||++|.--.-+| -+..|++.|||++++..
T Consensus 84 ------~~~~~rfl~~---------------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ------PWAVRRFLDH---------------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------HHHHHHHHHH---------------H--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------HHHHHHHHHH---------------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 1123334443 37887665434444 45678889999988754
No 242
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=44.07 E-value=90 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=28.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC--chhhhhhCCceEE
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN--FRTFVRSAGVDFF 241 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~--~~~~v~~~Gl~f~ 241 (646)
+|.|+..|..| +-++|+.|+++|++|+..=... ..+.+++.|++++
T Consensus 1 ~~~~iGiggsG----m~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~ 48 (448)
T TIGR01082 1 KIHFVGIGGIG----MSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIY 48 (448)
T ss_pred CEEEEEECHHH----HHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEe
Confidence 46676666644 4459999999999998742111 1223444566554
No 243
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=43.95 E-value=23 Score=34.40 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=34.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVR 234 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~ 234 (646)
||++...|+.| ..-...+.+.|+++|++|+++.++....++.
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 68888877654 4466799999999999999998888777775
No 244
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=43.91 E-value=70 Score=28.71 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=43.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcCC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLGG 245 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~~ 245 (646)
||++.+.++-.|..-..-++..|+..|++|.+.... .+.+.+.+.+-.++-+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 688999999999999999999999999999998653 344555566777766654
No 245
>PLN02939 transferase, transferring glycosyl groups
Probab=43.73 E-value=40 Score=41.08 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.4
Q ss_pred CCCCcceEEEEecC------CCCChHHHHHHHHHHHhCCCEEEEEeCCC
Q 006412 186 KSIPRLNIAILVVG------TRGDVQPFLAMAKRLQEFGHRVRLATHAN 228 (646)
Q Consensus 186 ~~~~~mrIvi~~~g------s~GHv~P~laLAk~L~~rGH~Vt~~t~~~ 228 (646)
...++|||++++.- ++|=-.-.-+|.++|++.||+|+++++..
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 34688999998841 22322335678999999999999998753
No 246
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=43.09 E-value=32 Score=38.79 Aligned_cols=87 Identities=17% Similarity=0.083 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh-CHHHHHHHHHHHHHhhc-----C
Q 006412 521 TTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML-QPEVKSRAMELAKLIEN-----E 594 (646)
Q Consensus 521 Tt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL-dp~~r~~A~~la~~l~~-----~ 594 (646)
++.||+++|+|+++.=-.| =+..|...--|. .++...-....+++++.++. ||+++.++.+-+.+--. .
T Consensus 381 v~IEAMa~glPvvAt~~GG----P~EiV~~~~tG~-l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~ 455 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGG----PAEIVVHGVTGL-LIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQ 455 (495)
T ss_pred eeHHHHhcCCCEEEecCCC----ceEEEEcCCcce-eeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHH
Confidence 8999999999999874322 223333333454 44442223337999999999 99988877665433222 2
Q ss_pred CcHHHHHHHHHHhcCCCC
Q 006412 595 DGVAAAVDAFHRHLPDEI 612 (646)
Q Consensus 595 ~G~~~Av~~ie~~L~~~~ 612 (646)
.-.++.+..+-+++....
T Consensus 456 ~~~~ri~~~~~~~~~~~~ 473 (495)
T KOG0853|consen 456 HYSERIASVLGKYLQWEK 473 (495)
T ss_pred HHHHHHHHHhHhcCCccc
Confidence 334555555555554443
No 247
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=42.00 E-value=1.5e+02 Score=32.96 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.3
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHI 324 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~ 324 (646)
.+||+||.+... ..+|+++|||++-
T Consensus 372 ~~~dliig~s~~---k~~A~~l~ip~ir 396 (432)
T TIGR01285 372 AGADLLITNSHG---RALAQRLALPLVR 396 (432)
T ss_pred cCCCEEEECcch---HHHHHHcCCCEEE
Confidence 378999998533 6799999999975
No 248
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=41.93 E-value=1.8e+02 Score=32.23 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=21.1
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.++. +..+|+++|||++-+
T Consensus 349 ~~pDl~Ig~s~---~~~~a~~~giP~~r~ 374 (416)
T cd01980 349 YRPDLAIGTTP---LVQYAKEKGIPALYY 374 (416)
T ss_pred cCCCEEEeCCh---hhHHHHHhCCCEEEe
Confidence 48999999843 457999999999774
No 249
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=40.89 E-value=2.6e+02 Score=31.29 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.5
Q ss_pred eEEEEecC-CCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 192 NIAILVVG-TRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 192 rIvi~~~g-s~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
+|+|.... .-|=..-..+|++.|+++|++|..+-
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK 39 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFK 39 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceee
Confidence 45555444 45778888999999999999999883
No 250
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.44 E-value=1.3e+02 Score=31.47 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=38.3
Q ss_pred CCCcceEEEEecCCCCChHHHHHHHHHHHh--CCCEEEEE-eC-CCchhhhhhCCceEEEcCC
Q 006412 187 SIPRLNIAILVVGTRGDVQPFLAMAKRLQE--FGHRVRLA-TH-ANFRTFVRSAGVDFFPLGG 245 (646)
Q Consensus 187 ~~~~mrIvi~~~gs~GHv~P~laLAk~L~~--rGH~Vt~~-t~-~~~~~~v~~~Gl~f~~i~~ 245 (646)
..+++||+++..|....++- |.++.++ -+++|.++ |. +.....+++.|++++-++.
T Consensus 86 ~~~~~ri~vl~Sg~gsnl~a---l~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 86 SAERKRVVILVSKEDHCLGD---LLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPV 145 (286)
T ss_pred cccCcEEEEEEcCCCCCHHH---HHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEecc
Confidence 34778999999998555544 4444443 36888887 33 3466778889999887753
No 251
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=40.17 E-value=3.6e+02 Score=29.73 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=29.8
Q ss_pred CcceEEEEec--CCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 189 PRLNIAILVV--GTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 189 ~~mrIvi~~~--gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
.+|+|+.+.. |+-|=-.-.+.||..|+.+|++|.++
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 4567665554 67789999999999999999999998
No 252
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=39.64 E-value=1.6e+02 Score=32.87 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=40.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch--------hhhhhCCceEEEcC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR--------TFVRSAGVDFFPLG 244 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~--------~~v~~~Gl~f~~i~ 244 (646)
--|+|+..++-|=..-...||..|+++|++|.+++.+.++ ...+..+++|+...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSY 162 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeec
Confidence 3455655668899999999999999999999999887765 22344677777653
No 253
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.62 E-value=37 Score=35.18 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=38.4
Q ss_pred ccccEEEEcCchhHHHHHHH------hCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCH
Q 006412 508 PQCSAVVHHGGAGTTATGLK------AGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQP 578 (646)
Q Consensus 508 ~~a~~vI~HGG~gTt~EaL~------~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp 578 (646)
..+|++|+-||=||++.++. .++|++.+-. -.+|- ..+.+++++.+++.++++.
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G~lGF----L~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------GHLGF----YTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------CCcee----cccCCHHHHHHHHHHHHcC
Confidence 36799999999999999986 4778887742 11231 2356677788888777743
No 254
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=39.50 E-value=18 Score=34.62 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=36.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC--chhhhhhCCceEEEcC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN--FRTFVRSAGVDFFPLG 244 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~--~~~~v~~~Gl~f~~i~ 244 (646)
..+|.++-+|++|| +-|.-|++.|++|++.-.+. ..+..++.|++..++.
T Consensus 4 ~k~IAViGyGsQG~-----a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGH-----AHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHH-----HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCEEEEECCChHHH-----HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 35788999998887 56889999999999986554 5677788999877653
No 255
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.45 E-value=1.2e+02 Score=28.51 Aligned_cols=106 Identities=21% Similarity=0.334 Sum_probs=58.5
Q ss_pred eEEEEecCCCCChHH----HHHHHHHHHhC-CCEEEEEeCCC---chhh----hhhCCce-EEEcCCChHHHHHHHhhcC
Q 006412 192 NIAILVVGTRGDVQP----FLAMAKRLQEF-GHRVRLATHAN---FRTF----VRSAGVD-FFPLGGDPRVLAGYMARNK 258 (646)
Q Consensus 192 rIvi~~~gs~GHv~P----~laLAk~L~~r-GH~Vt~~t~~~---~~~~----v~~~Gl~-f~~i~~~p~~l~~~~~~~~ 258 (646)
+|+++.-...|.++| .+..|++|++. |.+|+.++-.+ ..+. +...|.+ .+-+..+.. ..+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~--~~~----- 73 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPAL--AEY----- 73 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGG--TTC-----
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccc--ccc-----
Confidence 456666555777777 48889999864 88888875332 3333 3447764 555542210 000
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEECCCccc---hHHHHHHhCCCEEEEEc
Q 006412 259 GLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIANPPAYG---HAHVAEALGVPIHIFFT 327 (646)
Q Consensus 259 ~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad~~~~~---~~~vA~~lGIP~v~~~t 327 (646)
.-......+.+++.. ..||+|+......+ +..+|.+||.|++.-.+
T Consensus 74 --------~~~~~a~~l~~~~~~---------------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 --------DPEAYADALAELIKE---------------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp ---------HHHHHHHHHHHHHH---------------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred --------CHHHHHHHHHHHHHh---------------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 001123344444443 26899887755554 45789999999987543
No 256
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=39.10 E-value=36 Score=36.10 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=42.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLGG 245 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~ 245 (646)
|||+|+-.|+-|-. +|-.|++.||+|+++..+...+.+++.|+......+
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~ 50 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGG 50 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCC
Confidence 78999999988854 678899999999999888778888888998877654
No 257
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.96 E-value=1.6e+02 Score=33.38 Aligned_cols=29 Identities=38% Similarity=0.574 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
.+|+|+-.|..| +++|+.|+++|++|+..
T Consensus 8 ~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~ 36 (498)
T PRK02006 8 PMVLVLGLGESG-----LAMARWCARHGARLRVA 36 (498)
T ss_pred CEEEEEeecHhH-----HHHHHHHHHCCCEEEEE
Confidence 468888888766 45999999999999875
No 258
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=38.49 E-value=63 Score=32.16 Aligned_cols=55 Identities=29% Similarity=0.327 Sum_probs=37.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE---eCCCchhhhhhCCceEEEc
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA---THANFRTFVRSAGVDFFPL 243 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~---t~~~~~~~v~~~Gl~f~~i 243 (646)
-+++|.+-..++-|-...|+.=|++|+++|.+|.+. ||..-.......|++.+|.
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~ 61 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPR 61 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCC
Confidence 468999999999999999999999999999999997 3444333344567776654
No 259
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=38.41 E-value=2.4e+02 Score=29.23 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=23.8
Q ss_pred ceEEEEecCCCC-ChHHHHHHHHHHHhC---CCEEEEEeCCCchh
Q 006412 191 LNIAILVVGTRG-DVQPFLAMAKRLQEF---GHRVRLATHANFRT 231 (646)
Q Consensus 191 mrIvi~~~gs~G-Hv~P~laLAk~L~~r---GH~Vt~~t~~~~~~ 231 (646)
|||++.= --| |---+.+|+++|++. |++|+++++..-++
T Consensus 1 M~ILlTN--DDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 1 MRILITN--DDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred CeEEEEc--CCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 5666543 233 333356677777763 47999998875443
No 260
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.31 E-value=1.7e+02 Score=30.84 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHH----hCCCeee
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLK----AGCPTTV 534 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~----~GvP~vi 534 (646)
.++.+.+.+.+++.+..+++..... ..+. . .+ ....+...+...+|++|+=||=||++.+.. .++|++.
T Consensus 20 ~~~~~~i~~~l~~~g~~v~~~~~~~--~~~~-~-~~---~~~~~~~~~~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilg 92 (292)
T PRK03378 20 LTTHEMLYHWLTSKGYEVIVEQQIA--HELQ-L-KN---VKTGTLAEIGQQADLAIVVGGDGNMLGAARVLARYDIKVIG 92 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchh--hhcC-c-cc---ccccchhhcCCCCCEEEEECCcHHHHHHHHHhcCCCCeEEE
Confidence 3455666667778888777642110 0000 0 00 011122333457999999999999999986 2677776
Q ss_pred cCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHHH
Q 006412 535 VPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPEV 580 (646)
Q Consensus 535 vP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~~ 580 (646)
+-... +|- ..+++++++.++++++++..|
T Consensus 93 in~G~-------------lGF----l~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 93 INRGN-------------LGF----LTDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred EECCC-------------CCc----ccccCHHHHHHHHHHHHcCCc
Confidence 64311 342 235678899999998885443
No 261
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.16 E-value=1.1e+02 Score=32.75 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=37.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC--chhhhhhCCceEEEc
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN--FRTFVRSAGVDFFPL 243 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~--~~~~v~~~Gl~f~~i 243 (646)
|.++|.|.-.|+.||+- +.+|++ -|++|+.+.+.+ -++.++..|.+.+-.
T Consensus 181 pG~~vgI~GlGGLGh~a--Vq~AKA---MG~rV~vis~~~~kkeea~~~LGAd~fv~ 232 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMA--VQYAKA---MGMRVTVISTSSKKKEEAIKSLGADVFVD 232 (360)
T ss_pred CCcEEEEecCcccchHH--HHHHHH---hCcEEEEEeCCchhHHHHHHhcCcceeEE
Confidence 78899999999999974 455554 499999997764 456777788875543
No 262
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=38.02 E-value=1.7e+02 Score=32.85 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
.+||+++..|-.| +++++.|.++|++|++.-
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSD 37 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEc
Confidence 7899999999878 899999999999999984
No 263
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=37.89 E-value=53 Score=34.74 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=31.8
Q ss_pred ceEEEEec-CCCCChHHHHHHHHHHHhCCCEEEEEeCCCch
Q 006412 191 LNIAILVV-GTRGDVQPFLAMAKRLQEFGHRVRLATHANFR 230 (646)
Q Consensus 191 mrIvi~~~-gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~ 230 (646)
|||+|+.. |+-|=-.-..++|..++++|++|.+++.+...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 68887775 67888888999999999999999999876543
No 264
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.85 E-value=58 Score=30.14 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=43.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~ 244 (646)
.+|++.+.++-+|-.=---++..|++.|++|..+... .+.+.+.+.+..++-+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4799999999999999988999999999999998543 45555566677776654
No 265
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.85 E-value=1.2e+02 Score=34.21 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=30.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFP 242 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~ 242 (646)
..+|+|+..|..| +++|+.|.++|++|++.-.... .+.....|++++.
T Consensus 15 ~~~v~v~G~G~sG-----~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~ 64 (473)
T PRK00141 15 SGRVLVAGAGVSG-----RGIAAMLSELGCDVVVADDNETARHKLIEVTGVADIS 64 (473)
T ss_pred CCeEEEEccCHHH-----HHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEe
Confidence 3468887777655 4999999999998888642211 1223344666643
No 266
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.81 E-value=2.1e+02 Score=31.48 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=41.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh--------hhhhCCceEEEc
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT--------FVRSAGVDFFPL 243 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~--------~v~~~Gl~f~~i 243 (646)
=|+|+..-+.|-..-+-.+|..++++|+.|-+++.+.|+. ...+.+++||.-
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs 162 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS 162 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec
Confidence 3455555688899999999999999999999999887752 234578999874
No 267
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=37.59 E-value=3.5e+02 Score=30.26 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=25.7
Q ss_pred EEEEecCC-CCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 193 IAILVVGT-RGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 193 Ivi~~~gs-~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
|+|...++ -|=..-..+|++.|+++|++|..+=
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 45554443 5678889999999999999999983
No 268
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=37.55 E-value=21 Score=35.83 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=50.2
Q ss_pred cCCCcEEEEcCCCC--CCChHHHHHHHHHHHHhcCCeEEEEecCCCC-CC----C-CCCCC-cEEEeccCCccc---ccc
Q 006412 441 RGPEPIYIGFGSMP--LEDPKKTTEIILEALRDTGQRGIIDRGWGDL-GK----I-TEVPD-NIFLLEDCPHDW---LFP 508 (646)
Q Consensus 441 ~~~pvVyVsfGS~~--~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~-~~----l-~~~p~-nV~i~~~vPq~~---Ll~ 508 (646)
.+++.|.|..|+.. ..-+.+....+++.+.+.++++++..+..+. .. + ...+. .+.+.+-..-.+ ++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 34566777777653 1122333445578888777777665443331 01 1 11121 344544444333 389
Q ss_pred cccEEEEcCchhHHHHHHHhCCCeeec
Q 006412 509 QCSAVVHHGGAGTTATGLKAGCPTTVV 535 (646)
Q Consensus 509 ~a~~vI~HGG~gTt~EaL~~GvP~viv 535 (646)
++++||+.-. |.+.=|.+.|+|+|++
T Consensus 183 ~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 RADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred cCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 9999999766 5889999999999998
No 269
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=37.47 E-value=2e+02 Score=29.55 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=53.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC-chhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchH
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN-FRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEI 268 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~-~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i 268 (646)
.|+|+++. +. .=..+|++.|...++.+++.+... -.+.....+- .-+++ .. .
T Consensus 2 ~~~ilvlG--GT---~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~--~~~~G--------------~l-----~- 54 (257)
T COG2099 2 MMRILLLG--GT---SDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP--VRVGG--------------FL-----G- 54 (257)
T ss_pred CceEEEEe--cc---HHHHHHHHHhhccCccEEEEEcccccccchhccCC--eeecC--------------cC-----C-
Confidence 45666543 22 335789999999997777765433 2333333222 11111 00 0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEE--CCCccc----hHHHHHHhCCCEEEEEccCCC
Q 006412 269 SIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIA--NPPAYG----HAHVAEALGVPIHIFFTMPWT 331 (646)
Q Consensus 269 ~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIa--d~~~~~----~~~vA~~lGIP~v~~~t~p~~ 331 (646)
...+.++++. .+.|++|= +|+..- ++.+|+..|||++.+---+|.
T Consensus 55 ---~e~l~~~l~e---------------~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~ 105 (257)
T COG2099 55 ---AEGLAAFLRE---------------EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWA 105 (257)
T ss_pred ---HHHHHHHHHH---------------cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccc
Confidence 2233444433 35677772 333322 567899999999997655554
No 270
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=37.44 E-value=1.3e+02 Score=34.20 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=25.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATH 226 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~ 226 (646)
|||+++..|++.| +|+++|++. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999988888777 688888877 999988843
No 271
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=37.40 E-value=3.2e+02 Score=29.72 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHHHHhc-CCeEEEEecCCC-CCCC------CCCCCcEEEeccCCcccc---cccccEEEEcCc----h
Q 006412 455 LEDPKKTTEIILEALRDT-GQRGIIDRGWGD-LGKI------TEVPDNIFLLEDCPHDWL---FPQCSAVVHHGG----A 519 (646)
Q Consensus 455 ~~~p~~l~~~i~~Al~~~-g~r~Iv~~G~~~-~~~l------~~~p~nV~i~~~vPq~~L---l~~a~~vI~HGG----~ 519 (646)
....+-+.+++-+.+.+. .+|+++.. .+. ...+ ..+-+.|.+++-+||+++ +.+=+.|++-.= .
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~G-DGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc 285 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIG-DGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFC 285 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEec-CCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHH
Confidence 334456667766667654 56776653 332 1112 125689999999999988 888899986542 2
Q ss_pred hHHHHHHHhCCCeeec
Q 006412 520 GTTATGLKAGCPTTVV 535 (646)
Q Consensus 520 gTt~EaL~~GvP~viv 535 (646)
-++.||..+|.|++.-
T Consensus 286 ~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 4678999999999864
No 272
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.23 E-value=2.3e+02 Score=32.45 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=21.4
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIFF 326 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~~ 326 (646)
.+||+||.+. ...++|+++|||++.+.
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 3799999875 33679999999997653
No 273
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=37.22 E-value=3e+02 Score=30.86 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.1
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.+.. ...+|.++|||++.+
T Consensus 394 ~~pDl~ig~~~---~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAGGK---ERYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEccc---hHHHHHhcCCCEEEc
Confidence 47999998732 256888999998764
No 274
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.96 E-value=2.4e+02 Score=27.68 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=39.0
Q ss_pred eEEEEe-cCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch--------hhhhhCCceEEEcC
Q 006412 192 NIAILV-VGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR--------TFVRSAGVDFFPLG 244 (646)
Q Consensus 192 rIvi~~-~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~--------~~v~~~Gl~f~~i~ 244 (646)
+|+++. ..+-|=..-...||..++.+|.+|.++|.+.++ .+.+..|++|+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 444444 447799999999999999999999999988763 44556788887764
No 275
>PRK04148 hypothetical protein; Provisional
Probab=36.77 E-value=82 Score=29.19 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=32.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE-eCCCchhhhhhCCceEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA-THANFRTFVRSAGVDFF 241 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~-t~~~~~~~v~~~Gl~f~ 241 (646)
.++|+.+..| .| .++|..|++.||+|+.+ .++...+.+++.+++++
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v 63 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAF 63 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEE
Confidence 4788888888 44 24678888999999988 45555566666666654
No 276
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=36.60 E-value=41 Score=36.96 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=38.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA 236 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~ 236 (646)
.+||++...|+.|= .-.+.+.+.|++.|++|+++.++....++...
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 46899888887655 55899999999999999999988888887653
No 277
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=36.50 E-value=26 Score=40.34 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=48.2
Q ss_pred CcccccccccEEEEcC-----chhHHHHHHHhCCCeeecCCCC-ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHh
Q 006412 502 PHDWLFPQCSAVVHHG-----GAGTTATGLKAGCPTTVVPFFG-DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFM 575 (646)
Q Consensus 502 Pq~~Ll~~a~~vI~HG-----G~gTt~EaL~~GvP~vivP~~~-DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~l 575 (646)
++.+++..|++-|--. |+ |-+||++.|+|+|.-=+.| -++.+-..-...--|+..++...-+.++..+.|...
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~ 540 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADF 540 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3344456788888766 55 8999999999999865432 122211111122235445888888887777777655
Q ss_pred h------CH----HHHHHHHHHHHHh
Q 006412 576 L------QP----EVKSRAMELAKLI 591 (646)
Q Consensus 576 L------dp----~~r~~A~~la~~l 591 (646)
| +. ..|.++.++++.+
T Consensus 541 l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 541 LYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4 22 3566666666554
No 278
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=36.17 E-value=1.5e+02 Score=30.19 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHhCC-CEEEEEeCC------CchhhhhhCCceEEEcC
Q 006412 203 DVQPFLAMAKRLQEFG-HRVRLATHA------NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 203 Hv~P~laLAk~L~~rG-H~Vt~~t~~------~~~~~v~~~Gl~f~~i~ 244 (646)
=++|..++..+|+..| .+|.++|+- ..+++.++.|++...+.
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 4678899999999998 788888864 34677888999987663
No 279
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.82 E-value=1.9e+02 Score=32.05 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 006412 208 LAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 208 laLAk~L~~rGH~Vt~~t~~ 227 (646)
+++|+.|.++|++|++....
T Consensus 18 ~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 18 LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 59999999999999987543
No 280
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=34.91 E-value=66 Score=31.69 Aligned_cols=56 Identities=18% Similarity=0.050 Sum_probs=44.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~ 244 (646)
++.+|++.+.++-.|-....-++..|+.+|++|.++... .+.+.+.+.+..++-+.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 356899999999999999999999999999999987533 34455556666666554
No 281
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=34.39 E-value=2.2e+02 Score=31.35 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.4
Q ss_pred cccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 298 RSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 298 ~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
+||+||.+... .++|+++|||++-+
T Consensus 358 ~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCcc---chhhhhcCCCEEec
Confidence 79999998544 36999999999775
No 282
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.34 E-value=51 Score=34.75 Aligned_cols=51 Identities=27% Similarity=0.337 Sum_probs=35.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC---chhhhhhCCceEEEcC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN---FRTFVRSAGVDFFPLG 244 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~---~~~~v~~~Gl~f~~i~ 244 (646)
.+|||.|+-.|..|. ++|+.|.+.||+|++..... ..+.++...+-+..++
T Consensus 3 ~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVS 56 (308)
T ss_pred CCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECC
Confidence 358999988777664 78999999999999886432 3344444455555554
No 283
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=34.32 E-value=44 Score=34.47 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEc
Q 006412 209 AMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPL 243 (646)
Q Consensus 209 aLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i 243 (646)
.+|..|++.||+|++++.....+.+++.|+.+...
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~ 39 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSL 39 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEec
Confidence 47888999999999998765556678889877644
No 284
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=33.98 E-value=1.6e+02 Score=33.37 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=39.2
Q ss_pred cccccEEEEcCchhHHHHHHHh----CCCeeecCCCCChHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHHHHhhCH
Q 006412 507 FPQCSAVVHHGGAGTTATGLKA----GCPTTVVPFFGDQFFWGDRVQQKG-LGPAPIPISQLTVENLSNAVRFMLQP 578 (646)
Q Consensus 507 l~~a~~vI~HGG~gTt~EaL~~----GvP~vivP~~~DQ~~nA~~ve~~G-~G~~~i~~~~lt~e~L~~aI~~lLdp 578 (646)
...+|++|+=||=||++.+... ++|++.|- .| +|- ..+++.+++.++|..+++.
T Consensus 260 ~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------------~G~LGF----Lt~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 260 HTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------------MGSLGF----MTPFHSEQYRDCLDAILKG 318 (508)
T ss_pred ccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------------CCCcce----ecccCHHHHHHHHHHHHcC
Confidence 3579999999999999999884 45666541 11 332 2456788999999988843
No 285
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=33.87 E-value=2.1e+02 Score=29.90 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=29.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT 231 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~ 231 (646)
.++|+|+..|..|. .+|+.|+++||.|.++.-+....
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~ 39 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAA 39 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHH
Confidence 57888888887776 47999999999999987665443
No 286
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.35 E-value=1.5e+02 Score=30.71 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=38.7
Q ss_pred ccccEEEEcCchhHHHHHHHh-----CCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCH
Q 006412 508 PQCSAVVHHGGAGTTATGLKA-----GCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQP 578 (646)
Q Consensus 508 ~~a~~vI~HGG~gTt~EaL~~-----GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp 578 (646)
..+|++|+=||=||++.++.. .+|++.+-..| .+|- ..+.+.+++.+++..+++.
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGF----L~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGF----YCDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeE----cccCCHHHHHHHHHHHHcC
Confidence 457999999999999999974 45666554311 3342 2456778888888888743
No 287
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=33.15 E-value=1.5e+02 Score=32.37 Aligned_cols=86 Identities=23% Similarity=0.247 Sum_probs=63.4
Q ss_pred CcEEEeccCCc-cc---ccccccEEEEcCchhHHHHHHHhCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Q 006412 493 DNIFLLEDCPH-DW---LFPQCSAVVHHGGAGTTATGLKAGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENL 568 (646)
Q Consensus 493 ~nV~i~~~vPq-~~---Ll~~a~~vI~HGG~gTt~EaL~~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L 568 (646)
+++.+... ++ .. ++.+|+++|. .=+-++..|++.|+|.+.+- -|+-....+++.|+--..++...++.+.+
T Consensus 266 ~~i~~~~d-~~~~~~~~~l~~~dl~Vg-~R~HsaI~al~~g~p~i~i~---Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l 340 (385)
T COG2327 266 AEILVSSD-EYAEELGGILAACDLIVG-MRLHSAIMALAFGVPAIAIA---YDPKVRGLMQDLGLPGFAIDIDPLDAEIL 340 (385)
T ss_pred cceEeecc-hHHHHHHHHhccCceEEe-ehhHHHHHHHhcCCCeEEEe---ecHHHHHHHHHcCCCcccccCCCCchHHH
Confidence 56665542 33 22 3789999884 23568999999999999984 45666678888888644678889999999
Q ss_pred HHHHHHhh--CHHHHHH
Q 006412 569 SNAVRFML--QPEVKSR 583 (646)
Q Consensus 569 ~~aI~~lL--dp~~r~~ 583 (646)
.+.+.+.+ .++.+++
T Consensus 341 ~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 341 SAVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHHhccHHHHhh
Confidence 99998776 5666665
No 288
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=32.91 E-value=1.8e+02 Score=35.25 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=31.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC--chhhhhhCCceEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN--FRTFVRSAGVDFF 241 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~--~~~~v~~~Gl~f~ 241 (646)
.+|+|+..|..| +-+||+.|+++|++|+..=... ....+++.|+.++
T Consensus 5 ~~i~viG~G~sG----~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~ 53 (809)
T PRK14573 5 LFYHFIGIGGIG----MSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFF 53 (809)
T ss_pred ceEEEEEecHHh----HHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEe
Confidence 358888887755 5667999999999998752111 1223556677764
No 289
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=32.86 E-value=1.8e+02 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCC-CEEEEEeCC-CchhhhhhC---CceEEEcC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFG-HRVRLATHA-NFRTFVRSA---GVDFFPLG 244 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rG-H~Vt~~t~~-~~~~~v~~~---Gl~f~~i~ 244 (646)
+|||+++-.|.-|+ .+|..|+++| ++|+++.-. .-...+... .+++..+.
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 57888876655554 5789999999 999999654 333344333 35666554
No 290
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.83 E-value=55 Score=34.56 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=40.8
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc--hhhhhhCCceEEEcC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF--RTFVRSAGVDFFPLG 244 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~--~~~v~~~Gl~f~~i~ 244 (646)
...+|+|+-+|++||.+ |.-|++.|.+|.+...... .+.+.+.|++.+++.
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVE 69 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHH
Confidence 44589999999999966 6679999999999865543 456778899988764
No 291
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=32.62 E-value=4.4e+02 Score=25.13 Aligned_cols=34 Identities=35% Similarity=0.471 Sum_probs=25.5
Q ss_pred EEecCCCCChHHHH-HHHHHHHhCCCEEEEEeCCC
Q 006412 195 ILVVGTRGDVQPFL-AMAKRLQEFGHRVRLATHAN 228 (646)
Q Consensus 195 i~~~gs~GHv~P~l-aLAk~L~~rGH~Vt~~t~~~ 228 (646)
.+.+...+.+..++ .+|.+|+++|++|.=+...+
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRN 37 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 34555667777765 67999999999998876554
No 292
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=32.58 E-value=2.2e+02 Score=31.30 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=25.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF 229 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~ 229 (646)
|||+|+-.|.+ -.+|++++++-|+.+++++.+..
T Consensus 1 ~kiliiG~G~~-----~~~l~~~~~~~~~~~~~~~~~~~ 34 (423)
T TIGR00877 1 MKVLVIGNGGR-----EHALAWKLAQSPLVKYVYVAPGN 34 (423)
T ss_pred CEEEEECCChH-----HHHHHHHHHhCCCccEEEEECCC
Confidence 68888777766 45788888888887777755543
No 293
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.49 E-value=1.3e+02 Score=26.63 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=37.4
Q ss_pred cCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEc
Q 006412 198 VGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPL 243 (646)
Q Consensus 198 ~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i 243 (646)
....|.-..++.+.+.++++|..|..+|........+.....+.--
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 3467888999999999999999999999887777777776666543
No 294
>PRK11519 tyrosine kinase; Provisional
Probab=32.43 E-value=4.3e+02 Score=31.53 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.9
Q ss_pred ceEEEEec--CCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 191 LNIAILVV--GTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 191 mrIvi~~~--gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
.|+++++. |+-|--.-...||..|+..|++|.++-
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID 562 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLID 562 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 35665554 466778888999999999999999983
No 295
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=32.39 E-value=2.3e+02 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
.|||+++..|++.| +|++.|++.|++|..+-
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~ 32 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVI 32 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEE
Confidence 58999988777776 78899999998888773
No 296
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.35 E-value=1.4e+02 Score=33.42 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
.||.|+-.|..| +++|+.|+++|++|+..
T Consensus 10 ~~i~viG~G~~G-----~~~a~~l~~~G~~v~~~ 38 (460)
T PRK01390 10 KTVAVFGLGGSG-----LATARALVAGGAEVIAW 38 (460)
T ss_pred CEEEEEeecHhH-----HHHHHHHHHCCCEEEEE
Confidence 478888777766 34599999999998875
No 297
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.95 E-value=3.7e+02 Score=30.35 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=20.1
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHI 324 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~ 324 (646)
.+||++|.+ .....+|+++|||++-
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 479999997 3335899999999974
No 298
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.88 E-value=2e+02 Score=30.55 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhh
Q 006412 208 LAMAKRLQEFGHRVRLATHANFRTFVR 234 (646)
Q Consensus 208 laLAk~L~~rGH~Vt~~t~~~~~~~v~ 234 (646)
..+|++|.+.|.+|++++.........
T Consensus 161 ~~~a~~L~~~GI~vtlI~Dsav~~~m~ 187 (310)
T PRK08535 161 HITAKELAEYGIPVTLIVDSAVRYFMK 187 (310)
T ss_pred HHHHHHHHHCCCCEEEEehhHHHHHHH
Confidence 568999999999999987765444443
No 299
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=31.79 E-value=78 Score=31.12 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=25.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR 230 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~ 230 (646)
|||.|+ |+.|++- -.|.++...|||+||-++....+
T Consensus 1 mKIaiI--gAsG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAII--GASGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEE--ecCchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 677664 3444432 36789999999999999875443
No 300
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=31.53 E-value=1.1e+02 Score=29.99 Aligned_cols=55 Identities=9% Similarity=-0.150 Sum_probs=44.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~ 244 (646)
.-+|++.+.++-.|-....-++..|+.+|++|+++... .+.+.+.+.+.+++-+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 35899999999999999999999999999999998543 45566667777776664
No 301
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=31.43 E-value=1.9e+02 Score=31.07 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=51.5
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCC---cEEEecc--CCc--cc------------
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPD---NIFLLED--CPH--DW------------ 505 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~---nV~i~~~--vPq--~~------------ 505 (646)
+++.+.||-+...|.- .+++.+++.++++++.....+.+.. -+|. ....+.. ++- .+
T Consensus 4 i~~~~GGTGGHi~Pal---a~a~~l~~~g~~v~~vg~~~~~e~~-l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (352)
T PRK12446 4 IVFTGGGSAGHVTPNL---AIIPYLKEDNWDISYIGSHQGIEKT-IIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKG 79 (352)
T ss_pred EEEEcCCcHHHHHHHH---HHHHHHHhCCCEEEEEECCCccccc-cCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHH
Confidence 5667777765444432 2467788788898877544332211 1111 1112211 110 00
Q ss_pred ------c--cccccEEEEcCchhH---HHHHHHhCCCeeec
Q 006412 506 ------L--FPQCSAVVHHGGAGT---TATGLKAGCPTTVV 535 (646)
Q Consensus 506 ------L--l~~a~~vI~HGG~gT---t~EaL~~GvP~viv 535 (646)
+ --+-|++|++||+-+ ...|...|+|+++.
T Consensus 80 ~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0 134789999999986 89999999999874
No 302
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=31.39 E-value=3e+02 Score=30.60 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=21.1
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.++. ...+|+++|||++-+
T Consensus 354 ~~pDllig~s~---~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 354 FEPDLAIGTTP---LVQFAKEHGIPALYF 379 (422)
T ss_pred CCCCEEEcCCc---chHHHHHcCCCEEEe
Confidence 48999999843 346899999999874
No 303
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.31 E-value=41 Score=30.96 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 208 LAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 208 laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
.-+|..|++.||+|++++.....+.+++.|+.+....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPD 47 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETT
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecc
Confidence 3478899999999999998875556778888776554
No 304
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.23 E-value=2.9e+02 Score=30.79 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=39.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCchhh--------hhhCCceEEEcC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQ-EFGHRVRLATHANFRTF--------VRSAGVDFFPLG 244 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~-~rGH~Vt~~t~~~~~~~--------v~~~Gl~f~~i~ 244 (646)
-|+++..++-|=..-...||..|. ++|.+|.+++.+.++.. .+..|++++..+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecC
Confidence 344555568889999999999997 68999999988876542 344577776654
No 305
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.22 E-value=1.1e+02 Score=28.71 Aligned_cols=47 Identities=34% Similarity=0.382 Sum_probs=32.7
Q ss_pred EEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 195 ILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 195 i~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
|+..|+.|++= ..|+++|.++||+|+.++....+..- ..+++.+...
T Consensus 1 I~V~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVG--RALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGD 47 (183)
T ss_dssp EEEETTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESC
T ss_pred eEEECCCChHH--HHHHHHHHHCCCEEEEEecCchhccc-ccccccceee
Confidence 34567777664 45899999999999999866442222 5677776554
No 306
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=30.99 E-value=47 Score=33.53 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=32.0
Q ss_pred hHHHhHhc-CCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEec
Q 006412 434 NFVQWIQR-GPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRG 481 (646)
Q Consensus 434 ~l~~wL~~-~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G 481 (646)
++.+.+.. .+..+.|+|.-....+.+++.+...+.+.+.+..+|+.-.
T Consensus 139 ~il~~~~~~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~ 187 (227)
T TIGR02114 139 KVISLVKEWNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILAND 187 (227)
T ss_pred HHHHHHHhhCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 44444443 3446889987654434567777777888888999888643
No 307
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=30.89 E-value=35 Score=31.59 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCC
Q 006412 204 VQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAG 237 (646)
Q Consensus 204 v~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~G 237 (646)
+.-++-++..|+++||+|++++++.....++-+.
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~vaD 46 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEVAD 46 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhcC
Confidence 3346788999999999999999998888887643
No 308
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.74 E-value=5e+02 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=24.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
.+|.++-.|..|. .+|..|..+||+|++.-.
T Consensus 8 ~~VaVIGaG~MG~-----giA~~~a~aG~~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGS-----GWVARALAHGLDVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHH-----HHHHHHHhCCCeEEEEeC
Confidence 4688887776664 688888999999999854
No 309
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=30.69 E-value=90 Score=29.23 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=35.4
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 188 IPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 188 ~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
..+.||++.+.|.-||=.-.--+++.|++.|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 478899999999999999999999999999999998743
No 310
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.58 E-value=6.1e+02 Score=28.95 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=21.3
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIFF 326 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~~ 326 (646)
.+||+||.+. ...++|+++|||++.+.
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 3799999986 33578999999996653
No 311
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=30.46 E-value=2.8e+02 Score=28.62 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=23.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
|+|.|+..|..| ..+|..|+++||+|++....
T Consensus 1 m~I~IIG~G~mG-----~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVGLGLIG-----GSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEeecHHH-----HHHHHHHHHCCCEEEEEECC
Confidence 578877655443 46788899999999888543
No 312
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.40 E-value=75 Score=33.47 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCC-CCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CCCee
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWG-DLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GCPTT 533 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~-~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP~v 533 (646)
.++.+.+.+.+++.+..+++..... .........++.. .+-+...+-..+|++|+=||=||++.+... ++|++
T Consensus 15 ~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~Pil 92 (292)
T PRK01911 15 SPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYD--TFSDNEELDGSADMVISIGGDGTFLRTATYVGNSNIPIL 92 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccc--cccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEE
Confidence 4456666777888888877642111 0000000000000 000112333468999999999999999883 67888
Q ss_pred ecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 534 VVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 534 ivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
.+-... +|- ..+.+++++.+++..+++..
T Consensus 93 GIN~G~-------------lGF----Lt~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 93 GINTGR-------------LGF----LATVSKEEIEETIDELLNGD 121 (292)
T ss_pred EEecCC-------------CCc----ccccCHHHHHHHHHHHHcCC
Confidence 774311 342 23567888888888888443
No 313
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.81 E-value=3.7e+02 Score=28.36 Aligned_cols=107 Identities=16% Similarity=0.058 Sum_probs=64.6
Q ss_pred CCcEEEeccCCcccc---cccccEEEEcCchhHHHHHHHhCCCee--ecCCCCChHHHHHH------HHHcCCCCCCcCC
Q 006412 492 PDNIFLLEDCPHDWL---FPQCSAVVHHGGAGTTATGLKAGCPTT--VVPFFGDQFFWGDR------VQQKGLGPAPIPI 560 (646)
Q Consensus 492 p~nV~i~~~vPq~~L---l~~a~~vI~HGG~gTt~EaL~~GvP~v--ivP~~~DQ~~nA~~------ve~~G~G~~~i~~ 560 (646)
+-.|..++|+||+.. +--||+-+-.|- .|..-|..+|+|.+ |.|. -.|+.. +++.--+. +.
T Consensus 237 ~lrvvklPFvpqddyd~LL~lcD~n~VRGE-DSFVRAq~agkPflWHIYpQ----dentHl~KLeaFldky~~~l---p~ 308 (370)
T COG4394 237 KLRVVKLPFVPQDDYDELLWLCDFNLVRGE-DSFVRAQLAGKPFLWHIYPQ----DENTHLAKLEAFLDKYCPFL---PP 308 (370)
T ss_pred ceEEEEecCCcHhHHHHHHHhcccceeecc-hHHHHHHHcCCCcEEEecCC----ccccHHHHHHHHHHHhCCCC---CH
Confidence 345777889998864 788888777765 69999999999987 3443 333221 22222221 11
Q ss_pred CCCCHHHHHHH------------HHHhh--CHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHhc
Q 006412 561 SQLTVENLSNA------------VRFML--QPEVKSRAMELAKLIEN-EDGVAAAVDAFHRHL 608 (646)
Q Consensus 561 ~~lt~e~L~~a------------I~~lL--dp~~r~~A~~la~~l~~-~~G~~~Av~~ie~~L 608 (646)
-+++.|+.- -..+- -++.|+.|++++..+-. .+-+++.|..++++.
T Consensus 309 --~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~~ 369 (370)
T COG4394 309 --NTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKIG 369 (370)
T ss_pred --HHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHhc
Confidence 112222211 11111 15789999999876644 566788888887754
No 314
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.76 E-value=62 Score=33.80 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccc-cccccEEEEcCchhHHHHHHHh---CCCee
Q 006412 458 PKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWL-FPQCSAVVHHGGAGTTATGLKA---GCPTT 533 (646)
Q Consensus 458 p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~L-l~~a~~vI~HGG~gTt~EaL~~---GvP~v 533 (646)
..+..+.+.+.+++.+..+.+...... ....... .+...+ -..+|++|.-||=||+++++.. ++|++
T Consensus 14 ~~~~~~~I~~~L~~~g~~v~v~~~~~~--~~~~~~~-------~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~~pi~ 84 (277)
T PRK03708 14 ALKLAYRVYDFLKVSGYEVVVDSETYE--HLPEFSE-------EDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIPIL 84 (277)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh--hcCcccc-------cccccccccCCCEEEEEeCcHHHHHHHHhcCCCCeEE
Confidence 345666777788888888776421100 0000000 000011 1368999999999999999853 46888
Q ss_pred ecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 534 VVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 534 ivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
.++... .|- + .+++++++.+++..+++..
T Consensus 85 gIn~G~-------------lGF--l--~~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 85 GINMGT-------------LGF--L--TEVEPEETFFALSRLLEGD 113 (277)
T ss_pred EEeCCC-------------CCc--c--ccCCHHHHHHHHHHHHcCC
Confidence 887522 232 1 2456788888888887443
No 315
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.46 E-value=3.6e+02 Score=27.89 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=22.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
+|.|+-.|..|. .+|..|.++||+|+++..
T Consensus 3 ~V~VIG~G~mG~-----~iA~~la~~G~~V~~~d~ 32 (288)
T PRK09260 3 KLVVVGAGVMGR-----GIAYVFAVSGFQTTLVDI 32 (288)
T ss_pred EEEEECccHHHH-----HHHHHHHhCCCcEEEEeC
Confidence 577766665553 478889999999999854
No 316
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=29.42 E-value=1.9e+02 Score=30.61 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 208 LAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 208 laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
..++++|.+.|..|++++........+...+.+.-+|
T Consensus 168 ~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvG 204 (303)
T TIGR00524 168 RLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVG 204 (303)
T ss_pred HHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEc
Confidence 4678999999999999877655444443334454444
No 317
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.40 E-value=3.9e+02 Score=27.47 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
.+|.|+..|..| ..+|..|+.+||+|+++-
T Consensus 4 ~kI~VIG~G~mG-----~~ia~~la~~g~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMG-----NGIAQVCAVAGYDVVMVD 33 (282)
T ss_pred cEEEEEccCHHH-----HHHHHHHHHCCCceEEEe
Confidence 367776555444 467778899999999974
No 318
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.30 E-value=4.6e+02 Score=29.14 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=20.9
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.+.. ...+|+++|||++.+
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 47999999864 368999999998753
No 319
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=29.25 E-value=4e+02 Score=29.75 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.0
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.+... ..+|+++|||++-+
T Consensus 386 ~~pdllig~s~~---~~~A~~lgip~~~~ 411 (443)
T TIGR01862 386 LKPDIIFSGIKE---KFVAQKLGVPYRQM 411 (443)
T ss_pred cCCCEEEEcCcc---hhhhhhcCCCeEec
Confidence 379999998633 57999999999764
No 320
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=29.05 E-value=57 Score=34.91 Aligned_cols=55 Identities=24% Similarity=0.342 Sum_probs=44.3
Q ss_pred CCCCCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 185 KKSIPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 185 ~~~~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
.+..+.++|.|+.+|-.|.+ +|+.|.++||.|.....+++.+..++.|..++...
T Consensus 47 ~~~k~tl~IaIIGfGnmGqf-----lAetli~aGh~li~hsRsdyssaa~~yg~~~ft~l 101 (480)
T KOG2380|consen 47 EQWKATLVIAIIGFGNMGQF-----LAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLL 101 (480)
T ss_pred hhcccceEEEEEecCcHHHH-----HHHHHHhcCceeEecCcchhHHHHHHhcccccccH
Confidence 34567889999988877754 68999999999998887788888888887776553
No 321
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=28.71 E-value=2.5e+02 Score=30.39 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=27.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 193 IAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 193 Ivi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
+-+++.-++-..+=.--.|++|.+.|..|++++............+...-+|
T Consensus 181 ~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~vd~VivG 232 (344)
T PRK05720 181 IHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDAVIVG 232 (344)
T ss_pred eEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCCCEEEEc
Confidence 3334444544433333357888888888888765543333332234444444
No 322
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=28.65 E-value=64 Score=34.49 Aligned_cols=33 Identities=39% Similarity=0.540 Sum_probs=29.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
+|+|.++-.|++| .+||+.|.+.||+|++-...
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 4789999999988 58999999999999998764
No 323
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.60 E-value=1.4e+02 Score=29.59 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=35.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCC--CEEEEE-eCCC---chhhhhhCCceEEEcC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFG--HRVRLA-THAN---FRTFVRSAGVDFFPLG 244 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rG--H~Vt~~-t~~~---~~~~v~~~Gl~f~~i~ 244 (646)
+|||+|+..|...=+ .++.+++++.+ ++|.++ +... ..+++++.|++++.+.
T Consensus 1 m~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 1 MKRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred CceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 489999998874333 36666677654 777775 4432 4567788899987764
No 324
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=28.37 E-value=7.6e+02 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=24.7
Q ss_pred cccEE-EECCCc-cchHHHHHHhCCCEEEEEccCCCC
Q 006412 298 RSQAI-IANPPA-YGHAHVAEALGVPIHIFFTMPWTP 332 (646)
Q Consensus 298 ~pD~I-Iad~~~-~~~~~vA~~lGIP~v~~~t~p~~~ 332 (646)
.||+| |.|+.- ..++.=|.++|||++.+.-....|
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp 188 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDP 188 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCc
Confidence 68886 567544 336677999999999987554443
No 325
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=28.30 E-value=2.9e+02 Score=30.05 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=15.8
Q ss_pred CccchHHHHHHhCCCEEEEEc
Q 006412 307 PAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 307 ~~~~~~~vA~~lGIP~v~~~t 327 (646)
.++....+|+..|||++....
T Consensus 268 GTy~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 268 GTFKEAVIAHELGIPFYALAP 288 (363)
T ss_pred hhHHHHHHHHHhCCCEEEEcc
Confidence 344456789999999988654
No 326
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=28.25 E-value=1.3e+02 Score=33.20 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhC-CCEEEEEeC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEF-GHRVRLATH 226 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~r-GH~Vt~~t~ 226 (646)
|||+|+..|++.| +|+++|++. |+.+.++.+
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~~ 32 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVAP 32 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEeC
Confidence 7899988886666 699999886 544444444
No 327
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.12 E-value=2.1e+02 Score=26.23 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=43.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCC-EEEEEeCC----CchhhhhhCCce-EEEcCCChHHHHHH
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGH-RVRLATHA----NFRTFVRSAGVD-FFPLGGDPRVLAGY 253 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH-~Vt~~t~~----~~~~~v~~~Gl~-f~~i~~~p~~l~~~ 253 (646)
...|+.++.-..+|..-+-.+.++|+++|. ++.++... .-....++.|+. |+..+.+..+...+
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~ 122 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIF 122 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHH
Confidence 456777766667899999999999999987 56555442 223446678885 66666655444443
No 328
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=28.10 E-value=4.2e+02 Score=29.10 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.5
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.+... ..+|+++|||++-.
T Consensus 355 ~~pDl~ig~s~~---~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGKE---RYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCcc---hhhHHhcCCCEEEc
Confidence 379999998544 47899999998743
No 329
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=27.78 E-value=1.8e+02 Score=30.02 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcccCCCccEEEEccCCCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCcceEEEEecCCCCChHHHHHHHH
Q 006412 134 DREKKKLIVELVRIQNDGTVEVDLDKSAPFLE-FQPVEGPPIILDDTSFSDSKKSIPRLNIAILVVGTRGDVQPFLAMAK 212 (646)
Q Consensus 134 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~mrIvi~~~gs~GHv~P~laLAk 212 (646)
.....++.......-.||.+-+...-+..... +... .+..+..+|. ++ -++=+..- ..+|+
T Consensus 91 ~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a---------------~~~~~~~~V~-v~-es~P~~eG-~~~a~ 152 (282)
T PF01008_consen 91 EQAREKIADHASELINDGDTILTHGYSSTVERFLLSA---------------KKKGKKFRVI-VL-ESRPYNEG-RLMAK 152 (282)
T ss_dssp HHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHH---------------HHTTEEEEEE-EE---TTTTHH-HTHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHH---------------HHcCCeEEEE-Ec-cCCcchhh-hhHHH
Confidence 44555666666666677777777664433211 1100 0111334442 22 22222222 67888
Q ss_pred HHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 213 RLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 213 ~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
.|.++|.+|++++........+. .+.++=+|
T Consensus 153 ~L~~~gi~v~~i~d~~~~~~m~~-~vd~VliG 183 (282)
T PF01008_consen 153 ELAEAGIPVTLIPDSAVGYVMPR-DVDKVLIG 183 (282)
T ss_dssp HHHHTT-EEEEE-GGGHHHHHHC-TESEEEEE
T ss_pred HhhhcceeEEEEechHHHHHHHH-hCCeeEEe
Confidence 88888888888877655555544 34444443
No 330
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=27.76 E-value=4.8e+02 Score=29.63 Aligned_cols=125 Identities=18% Similarity=0.268 Sum_probs=72.4
Q ss_pred cEEEEcCCCCCCC-hHHHHHHHHHHHHhcCCeEEEE-ecCCCCCC----C-CCCCCcEEEeccCCcc---cccccccEEE
Q 006412 445 PIYIGFGSMPLED-PKKTTEIILEALRDTGQRGIID-RGWGDLGK----I-TEVPDNIFLLEDCPHD---WLFPQCSAVV 514 (646)
Q Consensus 445 vVyVsfGS~~~~~-p~~l~~~i~~Al~~~g~r~Iv~-~G~~~~~~----l-~~~p~nV~i~~~vPq~---~Ll~~a~~vI 514 (646)
+++..-|.++... .+-+.+. ++-+-+.+.++++. +|....+. + ...+.++.+.-+.... .++..+|+++
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~-i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~l 373 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEA-IDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVIL 373 (487)
T ss_pred cEEEEeeccccccchhHHHHH-HHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEE
Confidence 5555555554322 2223333 33333445666544 34211111 1 2356677777665433 2378899988
Q ss_pred E-----cCchhHHHHHHHhCCCeeecCCCC------ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh
Q 006412 515 H-----HGGAGTTATGLKAGCPTTVVPFFG------DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML 576 (646)
Q Consensus 515 ~-----HGG~gTt~EaL~~GvP~vivP~~~------DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL 576 (646)
- -||. |-++|+++|.+-|+-+..| |-..|. ....|.|. -....+++.++.++++.+
T Consensus 374 mPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf---~f~~~~~~~l~~al~rA~ 440 (487)
T COG0297 374 MPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGF---LFLQTNPDHLANALRRAL 440 (487)
T ss_pred eCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEE---EEecCCHHHHHHHHHHHH
Confidence 5 5787 7899999999888777653 222233 44455664 233459999999998775
No 331
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=27.56 E-value=1.7e+02 Score=27.25 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=38.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhC-CceEEEc
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRSA-GVDFFPL 243 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~~-Gl~f~~i 243 (646)
++|+|++.. .-.+=.-++.+++.|++. ||++ ++ ++...+++++. |++...+
T Consensus 3 ~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l-~A-T~gTa~~L~~~~Gi~v~~v 56 (142)
T PRK05234 3 ARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL-YA-TGTTGGLIQEATGLDVTRL 56 (142)
T ss_pred cCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE-EE-eChHHHHHHhccCCeeEEE
Confidence 567887766 445667899999999999 9985 34 44566778888 9886554
No 332
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.49 E-value=3e+02 Score=29.93 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=28.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
++.+++.-++-..+=..-.|++|.+.|..|++++.........+..+..+-+|
T Consensus 193 ~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd~VivG 245 (356)
T PRK08334 193 LKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVG 245 (356)
T ss_pred eEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCCEEEEC
Confidence 44444445554443333336778888888888766544333333234444444
No 333
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=27.38 E-value=2.6e+02 Score=29.58 Aligned_cols=83 Identities=20% Similarity=0.249 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhcccCCCccEEEEccCCCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCcceEEEEecCCCCChHHHHHHHH
Q 006412 134 DREKKKLIVELVRIQNDGTVEVDLDKSAPFLE-FQPVEGPPIILDDTSFSDSKKSIPRLNIAILVVGTRGDVQPFLAMAK 212 (646)
Q Consensus 134 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~mrIvi~~~gs~GHv~P~laLAk 212 (646)
+....++-...+..-.||.+-+....+..... +.... +..++.+|. +.-++-..+= ..+|+
T Consensus 99 ~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~---------------~~~~~f~V~--v~EsrP~~~G-~~~a~ 160 (301)
T TIGR00511 99 DKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAF---------------EQGKDIEVI--ATETRPRKQG-HITAK 160 (301)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHH---------------HcCCcEEEE--EecCCCcchH-HHHHH
Confidence 34455665666666678887666553321110 00000 011233433 2333332222 56899
Q ss_pred HHHhCCCEEEEEeCCCchhhhh
Q 006412 213 RLQEFGHRVRLATHANFRTFVR 234 (646)
Q Consensus 213 ~L~~rGH~Vt~~t~~~~~~~v~ 234 (646)
+|.+.|.+|++++.........
T Consensus 161 ~L~~~gI~vtlI~Dsa~~~~m~ 182 (301)
T TIGR00511 161 ELRDYGIPVTLIVDSAVRYFMK 182 (301)
T ss_pred HHHHCCCCEEEEehhHHHHHHH
Confidence 9999999999987654443333
No 334
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.37 E-value=96 Score=32.30 Aligned_cols=54 Identities=22% Similarity=0.496 Sum_probs=40.0
Q ss_pred cccEEEEcCchhHHHHHHH-hCCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 509 QCSAVVHHGGAGTTATGLK-AGCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 509 ~a~~vI~HGG~gTt~EaL~-~GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
.+|++|+=||=||++.+.. +.+|++.+-. -.+|- ..+.+.+++.++++++++.+
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G~lGF----L~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM-------------GGLGF----LTEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------CCCcc----CcccCHHHHHHHHHHHHcCC
Confidence 6899999999999999988 4567766532 12342 23678899999999988433
No 335
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.96 E-value=3e+02 Score=29.55 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.1
Q ss_pred CccchHHHHHHhCCCEEEEEc
Q 006412 307 PAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 307 ~~~~~~~vA~~lGIP~v~~~t 327 (646)
.++....+|+..|||++....
T Consensus 237 GT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 237 GTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred hHHHHHHHHHHcCCCEEEecc
Confidence 344456789999999988764
No 336
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.95 E-value=3.9e+02 Score=27.79 Aligned_cols=90 Identities=12% Similarity=0.230 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CCCeeecCCCC
Q 006412 464 IILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GCPTTVVPFFG 539 (646)
Q Consensus 464 ~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP~vivP~~~ 539 (646)
.+.+.+++.+..+.+...... .+. .+. ..+.+...+-..+|++|+=||=||++.+... ++|++.+-..
T Consensus 4 ~l~~~l~~~g~~v~~~~~~~~--~~~-~~~----~~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G- 75 (272)
T PRK02231 4 NLFHWLKERGYQVLVEKEIAE--QLN-LPE----NHLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG- 75 (272)
T ss_pred HHHHHHHHCCCEEEEecchhh--hcC-ccc----cccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-
Confidence 345667778888776421110 000 000 0112333444578999999999999988663 6788776421
Q ss_pred ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhC
Q 006412 540 DQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQ 577 (646)
Q Consensus 540 DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLd 577 (646)
.+|- + .+.+++++.+++..+++
T Consensus 76 ------------~lGF--L--~~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 76 ------------NLGF--L--TDIDPKNAYEQLEACLE 97 (272)
T ss_pred ------------CCcc--c--ccCCHHHHHHHHHHHHh
Confidence 1442 1 25677788888877763
No 337
>PRK12743 oxidoreductase; Provisional
Probab=26.92 E-value=4.1e+02 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
++.++++.++ |.+ -.++++.|.++||+|.++..
T Consensus 2 ~k~vlItGas-~gi--G~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASD-SGI--GKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCC-chH--HHHHHHHHHHCCCEEEEEeC
Confidence 3455555544 333 36799999999999988754
No 338
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.90 E-value=4e+02 Score=29.51 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=21.2
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.++.. ..+|+++|||++-+
T Consensus 371 ~~~dliiG~s~~---~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSYG---RRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECchh---HHHHHHcCCCEEEe
Confidence 379999998753 58999999999753
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=26.84 E-value=2e+02 Score=32.04 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=42.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhC-CCEEEEEeCCCchhh--------hhhCCceEEEcC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEF-GHRVRLATHANFRTF--------VRSAGVDFFPLG 244 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~r-GH~Vt~~t~~~~~~~--------v~~~Gl~f~~i~ 244 (646)
+.-|+|+..++-|=..-...||..|+++ |++|.+++.+.++.. .+..|+++++.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC
Confidence 3445555556889999999999999998 999999988766543 355688887654
No 340
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=26.61 E-value=1.4e+02 Score=31.03 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=33.3
Q ss_pred cceEEEEecCCCC-C---hHHHHHHHHHHHhCCCEEEEEeC-CCchhhhhhCCce
Q 006412 190 RLNIAILVVGTRG-D---VQPFLAMAKRLQEFGHRVRLATH-ANFRTFVRSAGVD 239 (646)
Q Consensus 190 ~mrIvi~~~gs~G-H---v~P~laLAk~L~~rGH~Vt~~t~-~~~~~~v~~~Gl~ 239 (646)
+++|+++..|..- | +.-...+.++|+++||+|.++.. ....+.+...++.
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D 58 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFD 58 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCC
Confidence 4588877755322 3 33668999999999999999843 3444555444544
No 341
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=26.57 E-value=3e+02 Score=29.56 Aligned_cols=21 Identities=29% Similarity=0.350 Sum_probs=15.9
Q ss_pred CccchHHHHHHhCCCEEEEEc
Q 006412 307 PAYGHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 307 ~~~~~~~vA~~lGIP~v~~~t 327 (646)
.++....+|+..|||++....
T Consensus 247 GT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 247 GTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred hHHHHHHHHHHhCCCEEEecc
Confidence 344556899999999988654
No 342
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.43 E-value=2.4e+02 Score=29.82 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHHh----CCCeee
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLKA----GCPTTV 534 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~~----GvP~vi 534 (646)
.+..+.+.+.+++.|..+.+...... .. +.. .+ . ...-..++++|+-||=||+++++.. ++|++.
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~--~~---~~~----~~-~-~~~~~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~g 86 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPK--DN---PYP----VF-L-ASASELIDLAIVLGGDGTVLAAARHLAPHDIPILS 86 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchh--hc---ccc----ch-h-hccccCcCEEEEECCcHHHHHHHHHhccCCCCEEE
Confidence 34556667778888888766432111 00 000 01 1 2223468999999999999999874 789888
Q ss_pred cCC
Q 006412 535 VPF 537 (646)
Q Consensus 535 vP~ 537 (646)
+..
T Consensus 87 in~ 89 (305)
T PRK02645 87 VNV 89 (305)
T ss_pred Eec
Confidence 765
No 343
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=26.31 E-value=1.8e+02 Score=28.45 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=66.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHH-hCCCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHH---HhhcCCCCC----
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQ-EFGHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGY---MARNKGLIP---- 262 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~-~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~---~~~~~~~~~---- 262 (646)
..|+++=.- .-.+.-+-.+++.+. +.|.++.+-++.+.++.++.+.+-+..+.....+.... ....-|..-
T Consensus 29 ~ei~L~Did-~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~e 107 (183)
T PF02056_consen 29 SEIVLMDID-EERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQE 107 (183)
T ss_dssp EEEEEE-SC-HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTS
T ss_pred cEEEEEcCC-HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCcccccc
Confidence 344443322 245566677887776 56899999888888888887776665554332222211 222223322
Q ss_pred -CCcchHHHHHHH---HHHHHHHHhhhcCCCccccCCCCcccEEEEC---CCccchHHHHHHhC-CCEEEEEccC
Q 006412 263 -SGPGEISIQRKQ---IKAIIESLLPACTDPDIETGVPFRSQAIIAN---PPAYGHAHVAEALG-VPIHIFFTMP 329 (646)
Q Consensus 263 -~~~~~i~~~~~~---~~~ll~~l~~~~~~~d~~~~~~~~pD~IIad---~~~~~~~~vA~~lG-IP~v~~~t~p 329 (646)
-+++-+....+. +.++.+..-. .-||+.|.| |.......+.+..+ ++++.++.+|
T Consensus 108 T~G~GG~~~alRtipv~~~ia~~i~~------------~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~ 170 (183)
T PF02056_consen 108 TVGPGGFFRALRTIPVMLDIARDIEE------------LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGP 170 (183)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHH------------HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHH
T ss_pred ccCccHHHHHHhhHHHHHHHHHHHHH------------hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCH
Confidence 223333333333 3344443332 247776655 44444555666676 9999988775
No 344
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=26.20 E-value=5.1e+02 Score=31.93 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=21.4
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIFF 326 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~~ 326 (646)
.+||++|++... ..+|+++|||++-..
T Consensus 388 ~~pDLlig~~~~---~~~a~k~giP~~~~~ 414 (917)
T PRK14477 388 KMPDLIVAGGKT---KFLALKTRTPFLDIN 414 (917)
T ss_pred cCCCEEEecCch---hhHHHHcCCCeEEcc
Confidence 389999997544 468999999998654
No 345
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=26.05 E-value=53 Score=35.86 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=33.4
Q ss_pred ceEEEEecCCCC--ChHHHHHHHHHHHhCCCEEEEEeC-CCchhhhhhCCc
Q 006412 191 LNIAILVVGTRG--DVQPFLAMAKRLQEFGHRVRLATH-ANFRTFVRSAGV 238 (646)
Q Consensus 191 mrIvi~~~gs~G--Hv~P~laLAk~L~~rGH~Vt~~t~-~~~~~~v~~~Gl 238 (646)
|||+++..|+.| | ++..|.+.|++|+++.- +...+.+++.|+
T Consensus 1 mki~~~GaGa~gr~~------~~~~l~~~g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGF------IGKLLADNGFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHH------HHHHHHhCCCeEEEEECCHHHHHHHhcCCC
Confidence 789999888655 5 78888999999999974 446677777775
No 346
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=25.87 E-value=6.4e+02 Score=25.98 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCC
Q 006412 218 GHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPF 297 (646)
Q Consensus 218 GH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~ 297 (646)
..+..+++|+.|.-+.+..|++...+-+. ..+.-++ .+.+.+++..+. .-
T Consensus 170 ~~~~~v~~H~af~Y~~~~~gl~~~~~~~~----------~~~~eps--------~~~l~~l~~~ik------------~~ 219 (282)
T cd01017 170 KGKTFVTQHAAFGYLARRYGLKQIAIVGV----------SPEVEPS--------PKQLAELVEFVK------------KS 219 (282)
T ss_pred CCCeEEEecccHHHHHHHCCCeEEecccC----------CCCCCCC--------HHHHHHHHHHHH------------Hc
Confidence 34556778999999999999997754211 1111111 123333333221 12
Q ss_pred cccEEEECCCccc--hHHHHHHhCCCEEEEEcc
Q 006412 298 RSQAIIANPPAYG--HAHVAEALGVPIHIFFTM 328 (646)
Q Consensus 298 ~pD~IIad~~~~~--~~~vA~~lGIP~v~~~t~ 328 (646)
+..+|+.++.... .-.+|+..|+|++.+.++
T Consensus 220 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 220 DVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred CCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 4668998876654 346899999998765443
No 347
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=25.64 E-value=98 Score=32.75 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=30.1
Q ss_pred ceEEEEecC--CC-CChHHHHHHHHHHHhCCCEEEEEeCCCc
Q 006412 191 LNIAILVVG--TR-GDVQPFLAMAKRLQEFGHRVRLATHANF 229 (646)
Q Consensus 191 mrIvi~~~g--s~-GHv~P~laLAk~L~~rGH~Vt~~t~~~~ 229 (646)
|||+|+.-+ +. -+..-..+|.++.++|||+|.++.+.+.
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 678877754 22 2455678999999999999999988754
No 348
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.60 E-value=83 Score=35.51 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=38.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSA 236 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~ 236 (646)
...||++...|+-+ ..=...+.+.|+++||+|+++.++....|+...
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 35689888877654 346789999999999999999998888888743
No 349
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.52 E-value=3.5e+02 Score=29.98 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
-|+|+-.|..| +++|+.|.++||+|+..
T Consensus 8 ~~~v~G~G~sG-----~s~a~~L~~~G~~v~~~ 35 (448)
T PRK03803 8 LHIVVGLGKTG-----LSVVRFLARQGIPFAVM 35 (448)
T ss_pred eEEEEeecHhH-----HHHHHHHHhCCCeEEEE
Confidence 35666666544 45999999999999875
No 350
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=25.49 E-value=1.5e+02 Score=28.58 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCE--EEEE-eCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHR--VRLA-THA 227 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~--Vt~~-t~~ 227 (646)
|||+|+..|+. .-+.++.++|++++|. |.++ |++
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~ 37 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNP 37 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESS
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccc
Confidence 89999987765 5567778899999998 3333 544
No 351
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=25.31 E-value=2.1e+02 Score=29.74 Aligned_cols=74 Identities=11% Similarity=0.183 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCeEEEEecCCCCCC--------CCCCCCcEEE----eccCCcccccccccEEEEcCc-hhHHHHHHH
Q 006412 461 TTEIILEALRDTGQRGIIDRGWGDLGK--------ITEVPDNIFL----LEDCPHDWLFPQCSAVVHHGG-AGTTATGLK 527 (646)
Q Consensus 461 l~~~i~~Al~~~g~r~Iv~~G~~~~~~--------l~~~p~nV~i----~~~vPq~~Ll~~a~~vI~HGG-~gTt~EaL~ 527 (646)
+...+.+.+++.|..++++........ +...| .++. .++-|+-+++..+|++|.-.- .+-..||++
T Consensus 185 ~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~-~i~w~~~d~g~NPY~~~La~Adyii~TaDSinM~sEAas 263 (329)
T COG3660 185 FASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSP-GIVWNNEDTGYNPYIDMLAAADYIISTADSINMCSEAAS 263 (329)
T ss_pred HHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCc-eeEeCCCCCCCCchHHHHhhcceEEEecchhhhhHHHhc
Confidence 444455566677777777654322111 11111 1111 134588888999999986665 477789999
Q ss_pred hCCCeeec
Q 006412 528 AGCPTTVV 535 (646)
Q Consensus 528 ~GvP~viv 535 (646)
.|+|+.+.
T Consensus 264 TgkPv~~~ 271 (329)
T COG3660 264 TGKPVFIL 271 (329)
T ss_pred cCCCeEEE
Confidence 99999886
No 352
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.23 E-value=1.3e+02 Score=33.29 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=21.5
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|.+.. ...+|+++|||+.-+
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 48999999875 357999999999654
No 353
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.11 E-value=1.2e+02 Score=31.17 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCchhHHHHHHH-hCCCeeec
Q 006412 457 DPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGAGTTATGLK-AGCPTTVV 535 (646)
Q Consensus 457 ~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~gTt~EaL~-~GvP~viv 535 (646)
...+..+.+.+.+.+.+..+.+.... . + --..+|++|+=||=||++.++. +++|++.+
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~----------~--------~---~~~~~d~vi~iGGDGT~L~a~~~~~~Pilgi 68 (256)
T PRK14075 10 EKEKEAKFLKEKISKEHEVVEFCEAS----------A--------S---GKVTADLIIVVGGDGTVLKAAKKVGTPLVGF 68 (256)
T ss_pred cHHHHHHHHHHHHHHcCCeeEeeccc----------c--------c---ccCCCCEEEEECCcHHHHHHHHHcCCCEEEE
Confidence 44556666677777777655543110 0 0 0146799999999999999987 57787766
Q ss_pred CCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCH
Q 006412 536 PFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQP 578 (646)
Q Consensus 536 P~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp 578 (646)
-... +|- ..+.+.+++.+++.++++.
T Consensus 69 n~G~-------------lGf----l~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 69 KAGR-------------LGF----LSSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred eCCC-------------Ccc----ccccCHHHHHHHHHHHHcC
Confidence 4211 342 2356778888888887743
No 354
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=25.10 E-value=2e+02 Score=30.06 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhh
Q 006412 206 PFLAMAKRLQEFGHRVRLATHANFRTFV 233 (646)
Q Consensus 206 P~laLAk~L~~rGH~Vt~~t~~~~~~~v 233 (646)
.-..||++|.+.|..|++++......+.
T Consensus 148 qG~~la~eL~~~GI~vtlI~Dsa~~~~m 175 (275)
T PRK08335 148 EGLALANELEFLGIEFEVITDAQLGLFA 175 (275)
T ss_pred hHHHHHHHHHHCCCCEEEEeccHHHHHH
Confidence 3455699999999999998776544333
No 355
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.88 E-value=4.7e+02 Score=27.98 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=22.4
Q ss_pred CcccEEEECCCcc---chHHHHHHhCCCEEEEEccCC
Q 006412 297 FRSQAIIANPPAY---GHAHVAEALGVPIHIFFTMPW 330 (646)
Q Consensus 297 ~~pD~IIad~~~~---~~~~vA~~lGIP~v~~~t~p~ 330 (646)
+++|+||+=---. .+..+|..+++|++.+.|.+-
T Consensus 76 ~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTTag 112 (351)
T cd08170 76 NGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTIAS 112 (351)
T ss_pred cCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCccc
Confidence 5889998742111 134556667999999887753
No 356
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.73 E-value=8e+02 Score=25.46 Aligned_cols=140 Identities=13% Similarity=0.196 Sum_probs=76.4
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch--------hhhhhCCceEEEcCCChHHHHHHHh---hc
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR--------TFVRSAGVDFFPLGGDPRVLAGYMA---RN 257 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~--------~~v~~~Gl~f~~i~~~p~~l~~~~~---~~ 257 (646)
+.-+|+|+...+.|=-.-+..|+..+..+|++|.+++.+.++ ......|++++... ++..+...+. +.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEE 152 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC-CHHHHHHHHHHHHhc
Confidence 445777777777887777778888898899999999876653 34445677777653 4544443322 11
Q ss_pred C--C-CCCCCcchHH---HHHHHHHHHHHHHhhh----cC-----CCcc----ccCCCCcccEEEE---CCC-ccc-hHH
Q 006412 258 K--G-LIPSGPGEIS---IQRKQIKAIIESLLPA----CT-----DPDI----ETGVPFRSQAIIA---NPP-AYG-HAH 313 (646)
Q Consensus 258 ~--~-~~~~~~~~i~---~~~~~~~~ll~~l~~~----~~-----~~d~----~~~~~~~pD~IIa---d~~-~~~-~~~ 313 (646)
. . .+-..++... .....+.+++...-+. +. ..++ .......+|-+|. |-. .++ ...
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~TKlDet~~~G~~l~ 232 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLK 232 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEEeecCCCCccHHHH
Confidence 1 1 1111122221 1233333333322110 00 0011 1223467787775 322 233 456
Q ss_pred HHHHhCCCEEEEEccC
Q 006412 314 VAEALGVPIHIFFTMP 329 (646)
Q Consensus 314 vA~~lGIP~v~~~t~p 329 (646)
++...|+|+..+.+..
T Consensus 233 ~~~~~~~Pi~~it~Gq 248 (270)
T PRK06731 233 IPAVSSAPIVLMTDGQ 248 (270)
T ss_pred HHHHHCcCEEEEeCCC
Confidence 7888999998877653
No 357
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=24.73 E-value=1.1e+02 Score=32.49 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE-eCCC-------------chhhhhhCCceEEEc
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA-THAN-------------FRTFVRSAGVDFFPL 243 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~-t~~~-------------~~~~v~~~Gl~f~~i 243 (646)
|||+|+..+.. .+...++|.++||+|..+ |.++ .++++.+.|++++..
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~ 62 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQP 62 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEec
Confidence 78888754432 356668888899998765 5432 244555667766543
No 358
>PLN02712 arogenate dehydrogenase
Probab=24.65 E-value=1.3e+02 Score=35.54 Aligned_cols=51 Identities=33% Similarity=0.468 Sum_probs=34.3
Q ss_pred CCCCCcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceE
Q 006412 185 KKSIPRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDF 240 (646)
Q Consensus 185 ~~~~~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f 240 (646)
+...++|+|.|+..|..|- .+|+.|+++||+|+.+..........+.|+.+
T Consensus 47 ~~~~~~~kIgIIG~G~mG~-----slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~ 97 (667)
T PLN02712 47 PDNTTQLKIAIIGFGNYGQ-----FLAKTLISQGHTVLAHSRSDHSLAARSLGVSF 97 (667)
T ss_pred CccCCCCEEEEEccCHHHH-----HHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEE
Confidence 3445778999987654443 57888999999998876554444444555543
No 359
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.64 E-value=5.4e+02 Score=26.79 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
.+|.|+-.|..| .+||..|++.||+|+++..
T Consensus 5 ~~I~vIGaG~mG-----~~iA~~l~~~g~~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMG-----SGIAALFARKGLQVVLIDV 35 (311)
T ss_pred cEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578887665544 4677888999999999854
No 360
>CHL00194 ycf39 Ycf39; Provisional
Probab=24.29 E-value=2.6e+02 Score=29.23 Aligned_cols=49 Identities=14% Similarity=0.277 Sum_probs=31.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCc-hhhhhhCCceEEEc
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANF-RTFVRSAGVDFFPL 243 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~-~~~v~~~Gl~f~~i 243 (646)
|+|++ .|+.|.+ --.|+++|.++||+|+.++.... .......|++++..
T Consensus 1 MkIlV--tGatG~i--G~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~ 50 (317)
T CHL00194 1 MSLLV--IGATGTL--GRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYG 50 (317)
T ss_pred CEEEE--ECCCcHH--HHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEEC
Confidence 56655 4666654 34578889999999999875421 22233456776543
No 361
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=24.29 E-value=92 Score=34.69 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=28.5
Q ss_pred ceEEEEecCCCC----C-hHHHHHHHHHHHhCCCEEEEEeCCCc
Q 006412 191 LNIAILVVGTRG----D-VQPFLAMAKRLQEFGHRVRLATHANF 229 (646)
Q Consensus 191 mrIvi~~~gs~G----H-v~P~laLAk~L~~rGH~Vt~~t~~~~ 229 (646)
-||+|+|. +| + -...-.|++.|+++|.+|+|+.|+..
T Consensus 307 ~~ViIVPG--YGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVA 348 (462)
T PRK09444 307 HSVIITPG--YGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA 348 (462)
T ss_pred CcEEEECC--hHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 46888663 44 2 24567899999999999999999854
No 362
>PRK08265 short chain dehydrogenase; Provisional
Probab=24.12 E-value=3.3e+02 Score=27.33 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=23.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
+.++++.++.| --.+++++|.++|++|.++..
T Consensus 7 k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 45555555443 457888999999999988754
No 363
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.01 E-value=95 Score=32.62 Aligned_cols=46 Identities=26% Similarity=0.405 Sum_probs=33.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC--CchhhhhhCCceEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA--NFRTFVRSAGVDFF 241 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~--~~~~~v~~~Gl~f~ 241 (646)
++|.|+-.|..| ..+|+.|.++||+|++.... ...+.+...|....
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a 48 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVA 48 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCccc
Confidence 578888777766 47899999999999998443 33556666676554
No 364
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=23.89 E-value=61 Score=32.97 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 006412 207 FLAMAKRLQEFGHRVRLATHAN 228 (646)
Q Consensus 207 ~laLAk~L~~rGH~Vt~~t~~~ 228 (646)
.-+|+++|+++||+|+++++..
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 4678999999999999998764
No 365
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.83 E-value=2.2e+02 Score=26.85 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=65.0
Q ss_pred cEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEE--ecCCCCCCCCCCCCcEEEeccCCcccccccccEEEEcCch---
Q 006412 445 PIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIID--RGWGDLGKITEVPDNIFLLEDCPHDWLFPQCSAVVHHGGA--- 519 (646)
Q Consensus 445 vVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~--~G~~~~~~l~~~p~nV~i~~~vPq~~Ll~~a~~vI~HGG~--- 519 (646)
.|-|-+||.. | ....+.+...|++.|..+-+. .-+...+.+. .++.... ...+++||.=+|.
T Consensus 2 ~V~Ii~gs~S--D-~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~---------~~~~~~~-~~~~~viIa~AG~~a~ 68 (150)
T PF00731_consen 2 KVAIIMGSTS--D-LPIAEEAAKTLEEFGIPYEVRVASAHRTPERLL---------EFVKEYE-ARGADVIIAVAGMSAA 68 (150)
T ss_dssp EEEEEESSGG--G-HHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHH---------HHHHHTT-TTTESEEEEEEESS--
T ss_pred eEEEEeCCHH--H-HHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHH---------HHHHHhc-cCCCEEEEEECCCccc
Confidence 4556667752 3 345566688888888655322 1121111110 0000000 1346788877664
Q ss_pred -hHHHHHHHhCCCeeecCCCCChHH----HHHHHH-HcCCCCCCcCCC-CCCHHHHHHHHHHhhCHHHHHHHHHHHHHhh
Q 006412 520 -GTTATGLKAGCPTTVVPFFGDQFF----WGDRVQ-QKGLGPAPIPIS-QLTVENLSNAVRFMLQPEVKSRAMELAKLIE 592 (646)
Q Consensus 520 -gTt~EaL~~GvP~vivP~~~DQ~~----nA~~ve-~~G~G~~~i~~~-~lt~e~L~~aI~~lLdp~~r~~A~~la~~l~ 592 (646)
.++..++. -+|+|.+|....+.. ....++ =.|+++..+..+ -.++.-++-.|-.+-|++++++.+..+++++
T Consensus 69 Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 69 LPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREKMK 147 (150)
T ss_dssp HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred chhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33333333 799999998766442 222232 235554222222 2233334444443348999999999888775
Q ss_pred c
Q 006412 593 N 593 (646)
Q Consensus 593 ~ 593 (646)
+
T Consensus 148 ~ 148 (150)
T PF00731_consen 148 E 148 (150)
T ss_dssp H
T ss_pred c
Confidence 4
No 366
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=23.82 E-value=3.3e+02 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred cCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 198 VGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 198 ~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
.|+.|.+ -..+++.|.++||+|.++...
T Consensus 4 tG~~g~i--G~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 4 TGASRGI--GRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred ECCCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4555543 577889999999999888543
No 367
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.78 E-value=1.3e+02 Score=25.06 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=37.3
Q ss_pred ceEEEEecCCC--CChHHHHHHHHHHHhCCCEEEEEe-CCCchh---hhhhCCceEEEcC
Q 006412 191 LNIAILVVGTR--GDVQPFLAMAKRLQEFGHRVRLAT-HANFRT---FVRSAGVDFFPLG 244 (646)
Q Consensus 191 mrIvi~~~gs~--GHv~P~laLAk~L~~rGH~Vt~~t-~~~~~~---~v~~~Gl~f~~i~ 244 (646)
-+|+|+|.+.. .+..-...++..|++.|.+|.+-. ...+.. .....|+.|.-+-
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iii 61 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVV 61 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEE
Confidence 46888887653 456678999999999999998853 333333 3345688876543
No 368
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=23.78 E-value=1.1e+02 Score=31.98 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
|||+|.-=|+-|=-.-.+.||..|+++|++|.++=
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78888888888999999999999999999999883
No 369
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.69 E-value=1.6e+02 Score=30.38 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=22.2
Q ss_pred cccccEEEEc--CchhH----HHHHHHhCCCeeec
Q 006412 507 FPQCSAVVHH--GGAGT----TATGLKAGCPTTVV 535 (646)
Q Consensus 507 l~~a~~vI~H--GG~gT----t~EaL~~GvP~viv 535 (646)
--++|++||- ||.|. +..|...|+|+|++
T Consensus 194 q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 194 QYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 3679999985 55533 55688899999998
No 370
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=23.66 E-value=89 Score=32.90 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=34.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCC-chhhhh-hCCceEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHAN-FRTFVR-SAGVDFF 241 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~-~~~~v~-~~Gl~f~ 241 (646)
.|||+|+-.|+-|-+ +|-.|.+.||+|+++.... ..+.++ +.|+...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~ 50 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV 50 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe
Confidence 589999999988854 4566888999999998753 444454 3477554
No 371
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.45 E-value=7.7e+02 Score=25.18 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=47.2
Q ss_pred CEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCCc
Q 006412 219 HRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPFR 298 (646)
Q Consensus 219 H~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~ 298 (646)
-+..+++|+.|.-+.+..|++...+.. .+.-++ .+.+.++.+.+. .-+
T Consensus 170 ~~~~v~~H~af~Y~~~~ygl~~~~~~~------------~~~eps--------~~~l~~l~~~ik------------~~~ 217 (266)
T cd01018 170 QRAFMVYHPAWGYFARDYGLTQIPIEE------------EGKEPS--------PADLKRLIDLAK------------EKG 217 (266)
T ss_pred CCeEEEECchhHHHHHHcCCEEEecCC------------CCCCCC--------HHHHHHHHHHHH------------HcC
Confidence 355677899999999999999876521 111111 223333333221 125
Q ss_pred ccEEEECCCccc--hHHHHHHhCCCEEEEE
Q 006412 299 SQAIIANPPAYG--HAHVAEALGVPIHIFF 326 (646)
Q Consensus 299 pD~IIad~~~~~--~~~vA~~lGIP~v~~~ 326 (646)
..+|+.++.... .-.+|+..|+|++.+.
T Consensus 218 v~~if~e~~~~~~~~~~la~~~g~~v~~ld 247 (266)
T cd01018 218 VRVVFVQPQFSTKSAEAIAREIGAKVVTID 247 (266)
T ss_pred CCEEEEcCCCCcHHHHHHHHHcCCeEEEeC
Confidence 678998865544 4478999999987753
No 372
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=69 Score=36.12 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
|||+|+..|-- -++-|.+|+++||+||++
T Consensus 1 ~rVai~GaG~A-----gL~~a~~La~~g~~vt~~ 29 (485)
T COG3349 1 MRVAIAGAGLA-----GLAAAYELADAGYDVTLY 29 (485)
T ss_pred CeEEEEcccHH-----HHHHHHHHHhCCCceEEE
Confidence 67877766533 488899999999999998
No 373
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.03 E-value=3.4e+02 Score=30.63 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=21.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
..+|+|+-.|..| ++.++.|+.+|++|++.
T Consensus 12 ~~~v~V~G~G~sG-----~aa~~~L~~~G~~v~~~ 41 (488)
T PRK03369 12 GAPVLVAGAGVTG-----RAVLAALTRFGARPTVC 41 (488)
T ss_pred CCeEEEEcCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 3467777666544 56667899999999984
No 374
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.77 E-value=2.9e+02 Score=24.36 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=36.1
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC-CchhhhhhCCceEEEcCCC
Q 006412 193 IAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA-NFRTFVRSAGVDFFPLGGD 246 (646)
Q Consensus 193 Ivi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~-~~~~~v~~~Gl~f~~i~~~ 246 (646)
++|+ +.-.|--.-.+..++.++++|..|..+|.. ...+...+.|+..++++.+
T Consensus 46 l~I~-iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 46 LVIA-VSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred EEEE-EECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHcCCcEEECCCC
Confidence 4444 344466677888888889999999888843 3445555567777776543
No 375
>PHA02542 41 41 helicase; Provisional
Probab=22.68 E-value=8.4e+02 Score=27.55 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=31.3
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCch
Q 006412 193 IAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFR 230 (646)
Q Consensus 193 Ivi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~ 230 (646)
|++..-|+.|=-.-.+.+|....+.|+.|.|++-+--.
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~ 230 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAE 230 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCH
Confidence 55666779999999999999888889999999866443
No 376
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.64 E-value=6.1e+02 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=35.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhC--CCEEEEEe--CCCchhhhhhCCceEEEcCC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEF--GHRVRLAT--HANFRTFVRSAGVDFFPLGG 245 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~r--GH~Vt~~t--~~~~~~~v~~~Gl~f~~i~~ 245 (646)
.+|||+++..|. ||- +-+|.++.++. ..+|.++. +++..+.+++.|++++-++.
T Consensus 92 ~~~kiavl~Sg~-g~n--l~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 92 QRPKVVIMVSKF-DHC--LNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CCeEEEEEEeCC-Ccc--HHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCC
Confidence 467999998887 443 33445555443 35777663 33567888899999987753
No 377
>CHL00175 minD septum-site determining protein; Validated
Probab=22.60 E-value=1.6e+02 Score=30.40 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.3
Q ss_pred cceEEEEec--CCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 190 RLNIAILVV--GTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 190 ~mrIvi~~~--gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
+.+|+.+.. |+-|=-.-...||..|+++|++|.++
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 345555554 34556688899999999999999988
No 378
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=22.49 E-value=2.3e+02 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGH 219 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH 219 (646)
|||+++-.|+|-| +||..|++.+-
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~ 24 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPL 24 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCc
Confidence 8999999999999 78999987663
No 379
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.48 E-value=9.5e+02 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=21.2
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||+||.+. ...++|+++|||++.+
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 3799999986 3467899999999764
No 380
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.40 E-value=4.1e+02 Score=26.41 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=20.4
Q ss_pred cCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 198 VGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 198 ~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
.|+.|.+ -.++++.|.++|++|.+....
T Consensus 16 tGa~g~i--G~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 16 TGSSQGI--GYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred ECCcchH--HHHHHHHHHHcCCEEEEEeCC
Confidence 3444544 578899999999999877543
No 381
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.33 E-value=2e+02 Score=32.16 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=40.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchh--------hhhhCCceEEEc
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRT--------FVRSAGVDFFPL 243 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~--------~v~~~Gl~f~~i 243 (646)
++-.|+|+..++-|=..-...||..|++.|++|.+++.+.++. .....|++++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~ 156 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD 156 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEec
Confidence 3445666666788999999999999999999999998876643 223456666543
No 382
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=22.32 E-value=3.6e+02 Score=30.27 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=21.1
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~~ 325 (646)
.+||++|++... ..+|+++|||++-+
T Consensus 394 ~~pDllig~~~~---~~~a~k~gip~~~~ 419 (457)
T TIGR01284 394 YKPDIILTGIRE---GELAKKLGVPYINI 419 (457)
T ss_pred cCCCEEEecCCc---chhhhhcCCCEEEc
Confidence 379999998644 56999999999775
No 383
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=22.31 E-value=1.2e+02 Score=29.29 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRTFVRS 235 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~~~~~~v~~ 235 (646)
..+++|+..++.|=-.=..+||+++.++|+.|.|++..+..+.++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 4578888888889666689999999999999999987766555543
No 384
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=22.24 E-value=4.5e+02 Score=30.55 Aligned_cols=109 Identities=20% Similarity=0.244 Sum_probs=0.0
Q ss_pred HhcCCCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCcccc---cccccEEEE
Q 006412 439 IQRGPEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPHDWL---FPQCSAVVH 515 (646)
Q Consensus 439 L~~~~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq~~L---l~~a~~vI~ 515 (646)
+.+++.+..++||++ -.....+++.|.+.|..+-+. |.+++.-++..-+ ..+-+.+||
T Consensus 498 ~~~G~~vail~~G~~-----~~~al~vae~L~~~Gi~~TVv--------------d~rfvkPlD~~ll~~La~~h~~~vt 558 (627)
T COG1154 498 LKEGEKVAILAFGTM-----LPEALKVAEKLNAYGISVTVV--------------DPRFVKPLDEALLLELAKSHDLVVT 558 (627)
T ss_pred EecCCcEEEEecchh-----hHHHHHHHHHHHhcCCCcEEE--------------cCeecCCCCHHHHHHHHhhcCeEEE
Q ss_pred ------cCchhH-HHHHHH-hC--CCeeecCC---CCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhh
Q 006412 516 ------HGGAGT-TATGLK-AG--CPTTVVPF---FGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFML 576 (646)
Q Consensus 516 ------HGG~gT-t~EaL~-~G--vP~vivP~---~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lL 576 (646)
+||.|| ++|.|. +| +|++-+.+ |-||.--.....+.|+- ++.+.+.|...+
T Consensus 559 lEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd----------~~~i~~~i~~~l 622 (627)
T COG1154 559 LEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLD----------AEGIARRILEWL 622 (627)
T ss_pred EecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcCCC----------HHHHHHHHHHHH
No 385
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.19 E-value=1.6e+02 Score=29.48 Aligned_cols=56 Identities=13% Similarity=-0.033 Sum_probs=45.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC----CchhhhhhCCceEEEcC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA----NFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~----~~~~~v~~~Gl~f~~i~ 244 (646)
..-+|++.+.++-.|-....=++..|+.+|++|.++... .+.+.+.+.+..++-+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS 146 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLS 146 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 456899999999999999999999999999999998643 45566666676666654
No 386
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.92 E-value=4.7e+02 Score=28.89 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.6
Q ss_pred CcccEEEECCCccchHHHHHHhCCCEEE
Q 006412 297 FRSQAIIANPPAYGHAHVAEALGVPIHI 324 (646)
Q Consensus 297 ~~pD~IIad~~~~~~~~vA~~lGIP~v~ 324 (646)
.+||+||.+... ..+|+++|+|++.
T Consensus 370 ~~pdliig~~~~---~~~a~~~~ip~i~ 394 (428)
T cd01965 370 EPVDLLIGNSHG---RYLARDLGIPLVR 394 (428)
T ss_pred cCCCEEEECchh---HHHHHhcCCCEEE
Confidence 479999998644 5789999999965
No 387
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.76 E-value=7.1e+02 Score=27.49 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
.+|+|+..|. --+++|+.|+++|++|++.-
T Consensus 6 ~~~~v~G~g~-----~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 6 KKILVAGLGG-----TGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCEEEEEe
Confidence 4676665542 34556999999999999873
No 388
>PRK12342 hypothetical protein; Provisional
Probab=21.63 E-value=2.4e+02 Score=29.07 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=21.8
Q ss_pred cccEEEECCCcc------chHHHHHHhCCCEEEEEc
Q 006412 298 RSQAIIANPPAY------GHAHVAEALGVPIHIFFT 327 (646)
Q Consensus 298 ~pD~IIad~~~~------~~~~vA~~lGIP~v~~~t 327 (646)
.||+|++.-.+. -+..+|+.||+|++....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 489999753332 256899999999987653
No 389
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.58 E-value=6.3e+02 Score=24.64 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=33.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCC--EEEEE-eCC-Cc--hhhhhhCCceEEEcC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGH--RVRLA-THA-NF--RTFVRSAGVDFFPLG 244 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH--~Vt~~-t~~-~~--~~~v~~~Gl~f~~i~ 244 (646)
|||+|+..|...- +.++.+.+++.++ +|.++ +.. +. .+++++.|++++.+.
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 6899988876543 4466677776665 66664 332 23 366778899887653
No 390
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.53 E-value=82 Score=26.88 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhCCceEEEcC
Q 006412 207 FLAMAKRLQEFGHRVRLATHANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 207 ~laLAk~L~~rGH~Vt~~t~~~~~~~v~~~Gl~f~~i~ 244 (646)
++.+|+.|++.|++ +++++.-.++++++|++...+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~Gi~~~~v~ 37 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEHGIEVTEVV 37 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHTT--EEECC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHcCCCceeee
Confidence 57899999999975 4455556688889999965553
No 391
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.47 E-value=8.9e+02 Score=24.83 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEEEeccCCc-------c--cccccccEEEEcCchhHHHHHHHhC
Q 006412 459 KKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIFLLEDCPH-------D--WLFPQCSAVVHHGGAGTTATGLKAG 529 (646)
Q Consensus 459 ~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~i~~~vPq-------~--~Ll~~a~~vI~HGG~gTt~EaL~~G 529 (646)
.++.+.+.+-+++.+.+-|++.+..+....+ -.++|+.+.--+. . ..++.. .|.-=+..-+.||+..|
T Consensus 93 ~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~-e~~~v~~va~~~~~~~~l~~~~~~~~~~G--~I~G~~g~ll~e~~~r~ 169 (244)
T COG1938 93 YEISNAVVEWAEENGVEEVISLGGMPARLRE-EKPSVYGVATSEEKLEKLKDLGAEPLEEG--TIVGPSGALLNECLKRG 169 (244)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCccccc-CCCceEEEecchhhhhHHhhcCCCccccc--eeecccHHHHHHHHHcC
Confidence 3455666677777888877776533211111 1245655543222 1 112332 55555667899999999
Q ss_pred CCeeec
Q 006412 530 CPTTVV 535 (646)
Q Consensus 530 vP~viv 535 (646)
+|-+++
T Consensus 170 i~a~~l 175 (244)
T COG1938 170 IPALVL 175 (244)
T ss_pred CCeEEE
Confidence 999886
No 392
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.34 E-value=1.6e+02 Score=27.11 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=40.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC----CCchhhhhhCCceEEEcC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH----ANFRTFVRSAGVDFFPLG 244 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~----~~~~~~v~~~Gl~f~~i~ 244 (646)
+|++.++++-+|-.=---++..|+..|++|..+.. +.+.+.+.+.+..++-+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 57888899999988888888999999999999754 344555556666666554
No 393
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=21.18 E-value=5.9e+02 Score=22.60 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhh-CCceEEEc
Q 006412 201 RGDVQPFLAMAKRLQEF--GHRVRLATHANFRTFVRS-AGVDFFPL 243 (646)
Q Consensus 201 ~GHv~P~laLAk~L~~r--GH~Vt~~t~~~~~~~v~~-~Gl~f~~i 243 (646)
..+=.-++.+++.|.+- |+++. +| ....+++++ .|++...+
T Consensus 8 d~dK~~~~~~a~~~~~ll~Gf~i~-AT-~gTa~~L~~~~Gi~v~~v 51 (115)
T cd01422 8 DNKKEDLVEFVKQHQELLSRHRLV-AT-GTTGLLIQEATGLTVNRM 51 (115)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEE-Ee-chHHHHHHHhhCCcEEEE
Confidence 34556788999999999 99883 44 445566776 89876555
No 394
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=21.14 E-value=1.1e+03 Score=26.39 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=19.9
Q ss_pred cccEEEECCCccchHHHHHHhCCCEEE
Q 006412 298 RSQAIIANPPAYGHAHVAEALGVPIHI 324 (646)
Q Consensus 298 ~pD~IIad~~~~~~~~vA~~lGIP~v~ 324 (646)
+||++|++... ..+|+++|||++-
T Consensus 371 ~~dliig~s~~---~~~a~~~gip~~~ 394 (455)
T PRK14476 371 GADLLITNSHG---RQAAERLGIPLLR 394 (455)
T ss_pred CCCEEEECchh---HHHHHHcCCCEEE
Confidence 58999998644 5799999999975
No 395
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.10 E-value=1.7e+02 Score=32.33 Aligned_cols=94 Identities=21% Similarity=0.161 Sum_probs=0.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE-eCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcch
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA-THANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGE 267 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~-t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~ 267 (646)
+++||+|+.+|-.|.- +++.|.++||+|+++ ..+...+...+.+..+.-+.+++.....+..-...
T Consensus 230 ~~~~iiIiG~G~~g~~-----l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~-------- 296 (453)
T PRK09496 230 PVKRVMIVGGGNIGYY-----LAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGID-------- 296 (453)
T ss_pred CCCEEEEECCCHHHHH-----HHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCc--------
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccccCCCCcccEEEE----CCCccchHHHHHHhCCCEEEE
Q 006412 268 ISIQRKQIKAIIESLLPACTDPDIETGVPFRSQAIIA----NPPAYGHAHVAEALGVPIHIF 325 (646)
Q Consensus 268 i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~~pD~IIa----d~~~~~~~~vA~~lGIP~v~~ 325 (646)
++|+||+ +-........|+.++++.++.
T Consensus 297 ------------------------------~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 297 ------------------------------EADAFIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred ------------------------------cCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
No 396
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=20.80 E-value=5.5e+02 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=21.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHHhC
Q 006412 189 PRLNIAILVVGTRGDVQPFLAMAKRLQEF 217 (646)
Q Consensus 189 ~~mrIvi~~~gs~GHv~P~laLAk~L~~r 217 (646)
..+++++ ..|++||..=|+.|-+.|+++
T Consensus 37 ~s~~~lV-vlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 37 KSLSTLV-VLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred CcceEEE-EEcCCCcHHHHHHHHHHHHhh
Confidence 3345544 468999999999999999876
No 397
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=20.77 E-value=1.5e+02 Score=26.99 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=24.9
Q ss_pred ceEEEEecC-CCC--ChHHHHHHHHHHHhCCCEE-EEEeCC
Q 006412 191 LNIAILVVG-TRG--DVQPFLAMAKRLQEFGHRV-RLATHA 227 (646)
Q Consensus 191 mrIvi~~~g-s~G--Hv~P~laLAk~L~~rGH~V-t~~t~~ 227 (646)
|||+|+... -+| ...-.+.+|+.+.++||+| +++--.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 677665543 344 4455688899999999984 665433
No 398
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=20.76 E-value=7.7e+02 Score=25.44 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
.+|.|+-.|..| .+||..|..+||+|+++-.
T Consensus 5 ~~V~vIG~G~mG-----~~iA~~l~~~G~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMG-----SGIAQLAAAAGMDVWLLDS 35 (295)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeC
Confidence 467777766555 4788899999999998843
No 399
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.74 E-value=2.6e+02 Score=28.82 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCEEEEEeCCCch
Q 006412 208 LAMAKRLQEFGHRVRLATHANFR 230 (646)
Q Consensus 208 laLAk~L~~rGH~Vt~~t~~~~~ 230 (646)
..+|++|.+.|.+|++++.....
T Consensus 124 ~~~a~~L~~~GI~vtli~Dsa~~ 146 (253)
T PRK06372 124 IDMAKLLVKSGIDVVLLTDASMC 146 (253)
T ss_pred HHHHHHHHHCCCCEEEEehhHHH
Confidence 57999999999999988665433
No 400
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.73 E-value=1.3e+02 Score=34.93 Aligned_cols=54 Identities=20% Similarity=0.350 Sum_probs=40.4
Q ss_pred cccEEEEcCchhHHHHHHHh----CCCeeecCCCCChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHhhCHH
Q 006412 509 QCSAVVHHGGAGTTATGLKA----GCPTTVVPFFGDQFFWGDRVQQKGLGPAPIPISQLTVENLSNAVRFMLQPE 579 (646)
Q Consensus 509 ~a~~vI~HGG~gTt~EaL~~----GvP~vivP~~~DQ~~nA~~ve~~G~G~~~i~~~~lt~e~L~~aI~~lLdp~ 579 (646)
.+|++|+-||=||++.+... ++|++.|-... +|- ..+.+.+++.+++.++++.+
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGF----L~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGF----LTEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCc----CcccCHHHHHHHHHHHHcCC
Confidence 68999999999999999874 67888774321 342 23577888999998888443
No 401
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=20.60 E-value=3.3e+02 Score=27.56 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCEEEEEeCCCchhhhhhCCceEEEcCCChHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHhhhcCCCccccCCCC
Q 006412 218 GHRVRLATHANFRTFVRSAGVDFFPLGGDPRVLAGYMARNKGLIPSGPGEISIQRKQIKAIIESLLPACTDPDIETGVPF 297 (646)
Q Consensus 218 GH~Vt~~t~~~~~~~v~~~Gl~f~~i~~~p~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ll~~l~~~~~~~d~~~~~~~ 297 (646)
..+..+++|+.|.-+.+..|++...+-+. ..+.-++ ......+.+.++. -
T Consensus 149 ~~~~~v~~h~~~~Y~~~~~gl~~~~~~~~----------~~~~~ps-----~~~l~~l~~~ik~---------------~ 198 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAKRYGLKVIGVIEI----------SPGEEPS-----PKDLAELIKLIKE---------------N 198 (256)
T ss_dssp SGGEEEEEESTTHHHHHHTT-EEEEEESS----------SSSSSS------HHHHHHHHHHHHH---------------T
T ss_pred cCCeEEEEChHHHHHHHhcCCceeeeecc----------ccccCCC-----HHHHHHHHHHhhh---------------c
Confidence 34677789999999999999987664311 1111111 1112233333332 2
Q ss_pred cccEEEECCCccc--hHHHHHHhCCCEEEEEcc
Q 006412 298 RSQAIIANPPAYG--HAHVAEALGVPIHIFFTM 328 (646)
Q Consensus 298 ~pD~IIad~~~~~--~~~vA~~lGIP~v~~~t~ 328 (646)
+..+|+.++.... .-.+|+.+|+|++.+.++
T Consensus 199 ~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 199 KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 5678998865554 356799999999665443
No 402
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.60 E-value=7.8e+02 Score=25.07 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.8
Q ss_pred CCCChHHHHHHHHHHHhCCCEEEEEeCC-Cchhhhhh
Q 006412 200 TRGDVQPFLAMAKRLQEFGHRVRLATHA-NFRTFVRS 235 (646)
Q Consensus 200 s~GHv~P~laLAk~L~~rGH~Vt~~t~~-~~~~~v~~ 235 (646)
+..|+...+.+...++.+|-.+.|+++. .+.+.|+.
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~ 126 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVER 126 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHH
Confidence 6678999999999999999999999554 45666654
No 403
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=20.48 E-value=4.6e+02 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=23.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
|.++++.++ |.+ -.+++++|.++|++|.+++..
T Consensus 6 k~vlItGas-~gI--G~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 6 KVALVTGAN-TGL--GQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEcCc
Confidence 344444443 433 678899999999999988653
No 404
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.44 E-value=5.5e+02 Score=25.59 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=22.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeC
Q 006412 192 NIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATH 226 (646)
Q Consensus 192 rIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~ 226 (646)
|+++++.++ |. --.++|++|.++|++|.++..
T Consensus 9 k~~lItGas-~g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCN-TG--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEecC
Confidence 566665554 33 346788999999999988754
No 405
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.38 E-value=76 Score=33.62 Aligned_cols=40 Identities=25% Similarity=0.221 Sum_probs=29.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC-Cchhhhhh
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA-NFRTFVRS 235 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~-~~~~~v~~ 235 (646)
|||.|+..|+.| .++|..|++.||+|+++... ...+.+++
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~~~~~~~i~~ 41 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRNHTTFESINT 41 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecCHHHHHHHHH
Confidence 688888888776 47899999999999988763 23333443
No 406
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=20.32 E-value=7.1e+02 Score=26.83 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcccEEEECCC-cc--chHHHHHHhCCCEEEEEccC
Q 006412 297 FRSQAIIANPP-AY--GHAHVAEALGVPIHIFFTMP 329 (646)
Q Consensus 297 ~~pD~IIad~~-~~--~~~~vA~~lGIP~v~~~t~p 329 (646)
+++|+||+=-- +. .+..+|..+++|++.+.|.+
T Consensus 83 ~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 83 NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 47899986321 11 13456667799999988865
No 407
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.25 E-value=83 Score=33.39 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=27.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEeCC
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHA 227 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t~~ 227 (646)
.|||.|+-.|..| .++|..|.+.||+|++....
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5799999888777 47899999999999998763
No 408
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=20.23 E-value=3.4e+02 Score=28.78 Aligned_cols=70 Identities=9% Similarity=-0.025 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCCCCChHHHHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcEE-EeccCCcccccccccEEEEcCchhH
Q 006412 443 PEPIYIGFGSMPLEDPKKTTEIILEALRDTGQRGIIDRGWGDLGKITEVPDNIF-LLEDCPHDWLFPQCSAVVHHGGAGT 521 (646)
Q Consensus 443 ~pvVyVsfGS~~~~~p~~l~~~i~~Al~~~g~r~Iv~~G~~~~~~l~~~p~nV~-i~~~vPq~~Ll~~a~~vI~HGG~gT 521 (646)
+.+.+|++|+++ ..+++-++..|.+++....... . . +.+. +.....-+++++.+|+++.|.-.+.
T Consensus 137 ~tvgIvG~G~IG--------~~vA~~l~afG~~V~~~~~~~~--~---~-~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~ 202 (312)
T PRK15469 137 FTIGILGAGVLG--------SKVAQSLQTWGFPLRCWSRSRK--S---W-PGVQSFAGREELSAFLSQTRVLINLLPNTP 202 (312)
T ss_pred CEEEEECCCHHH--------HHHHHHHHHCCCEEEEEeCCCC--C---C-CCceeecccccHHHHHhcCCEEEECCCCCH
Confidence 457789999984 2345566678998876532111 0 0 1111 1122233455899999999998765
Q ss_pred HHHHH
Q 006412 522 TATGL 526 (646)
Q Consensus 522 t~EaL 526 (646)
-.+.+
T Consensus 203 ~T~~l 207 (312)
T PRK15469 203 ETVGI 207 (312)
T ss_pred HHHHH
Confidence 54443
No 409
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=20.15 E-value=1.4e+02 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=29.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEE
Q 006412 191 LNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLA 224 (646)
Q Consensus 191 mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~ 224 (646)
|.|.+..=|+-|--.-...||..|+++|++|.++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 6677775567889999999999999999999988
No 410
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.02 E-value=70 Score=30.20 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=23.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHHhCCCEEEEEe
Q 006412 190 RLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLAT 225 (646)
Q Consensus 190 ~mrIvi~~~gs~GHv~P~laLAk~L~~rGH~Vt~~t 225 (646)
+|+|.|+-.|..| .++|+.|.+.||+|++.-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 5788888887665 478999999999998863
Done!