Query 006413
Match_columns 646
No_of_seqs 328 out of 1341
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 00:24:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 6E-45 2.1E-49 375.3 16.6 258 338-639 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 4.2E-40 1.4E-44 343.4 16.3 250 339-632 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 2.4E-25 8.2E-30 235.4 14.8 227 337-634 3-255 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 5E-23 1.7E-27 211.4 12.7 208 341-619 8-224 (263)
5 3v1a_A Computational design, M 46.6 18 0.00063 27.8 3.6 37 195-231 6-42 (48)
6 1yzm_A FYVE-finger-containing 38.9 24 0.00083 27.4 3.2 37 194-230 6-42 (51)
7 1z0k_B FYVE-finger-containing 37.7 24 0.00083 29.1 3.2 38 194-231 24-61 (69)
8 1z0j_B FYVE-finger-containing 33.6 33 0.0011 27.5 3.3 38 194-231 13-50 (59)
9 3dfz_A SIRC, precorrin-2 dehyd 24.3 2E+02 0.0069 28.2 8.0 78 207-299 143-221 (223)
10 4e61_A Protein BIM1; EB1-like 20.9 75 0.0026 28.2 3.6 39 244-282 43-101 (106)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=6e-45 Score=375.29 Aligned_cols=258 Identities=18% Similarity=0.214 Sum_probs=185.2
Q ss_pred ceEEEEEcCc--chhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEEeccchhhcccccchhh
Q 006413 338 LFHYALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVL 415 (646)
Q Consensus 338 ~iHIa~~sDn--vlaasVvInSil~N~~~pe~ivFHIVtd~ln~~~mk~wf~~n~~~~atI~v~nie~F~~l~~~y~p~L 415 (646)
.+|||+++|+ +.+++|+|+|++.|+++ ++++|||++++++.+..+.....-...+..|+++.++. ++
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~--------- 73 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DL--------- 73 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HH---------
Confidence 5999999996 47899999999999986 58999999999987654333221112356677766532 00
Q ss_pred hhhccccceEEEecccccCCCCccccCCCCcchhhhhHHhhhhccccC-CCeEEEEecCeeeccCchhhhccCCCCCeee
Q 006413 416 KQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPR-LNKVLFLDDDVVVQKDLSGLWSIDLKGKVNG 494 (646)
Q Consensus 416 ~ql~s~~~~~~~F~~~~~~~~~~lk~r~~~yiS~~ty~Rf~IPeiLP~-ldKVLYLDsDvIV~~DLseLw~iDL~gkviA 494 (646)
|. . .+..+++|.++|+||++|+++|+ ++||||||+|+||++||++||++|++|+++|
T Consensus 74 ------------~~--------~--~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~a 131 (276)
T 3tzt_A 74 ------------FS--------F--AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILA 131 (276)
T ss_dssp --------------------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEE
T ss_pred ------------Hh--------c--CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEE
Confidence 00 0 01124678999999999999995 9999999999999999999999999999999
Q ss_pred eeccccccccccccccccCCcccccCCCCCCCccccceeecccHHHHHhhHHHHHHHHHHHcCCcccccCCCCchhhhhh
Q 006413 495 AVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITF 574 (646)
Q Consensus 495 AVeDc~~~~~r~~~yLnfs~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~k~n~~~~l~dqg~Ln~~ll~F 574 (646)
||+||+... ...+.+ ..+++...||||||||||||++||+.++++++++|++.+..... .++|+++|.+|
T Consensus 132 av~d~~~~~--~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~~--~~DQd~LN~~f 201 (276)
T 3tzt_A 132 AASHTGKTD--MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLL--LPDQDILNAMY 201 (276)
T ss_dssp EEEC----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHH
T ss_pred EEEecccch--HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccccc--CCChhHHHHHH
Confidence 999997431 111110 11344446999999999999999999999999999987764332 35666677899
Q ss_pred ccccccccC-cceeecCCCCC-----CCc----ccccCCCeEEEccCCCCCcccCCccchHHHHHHHhccCcchh
Q 006413 575 WKRTYPLDR-FWHVLGLGYNP-----SVN----QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYL 639 (646)
Q Consensus 575 ~g~i~~Ld~-~WN~~~lgy~~-----~i~----~~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kY~~~~~~fl 639 (646)
.|++++||. +||+++ |+.. ..+ ....++|+||||+|+.|||...+.++|+++||+|+++..++|
T Consensus 202 ~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 202 GDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp GGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred hCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 999999998 999996 3220 001 123457999999999999999999999999999999888776
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=4.2e-40 Score=343.38 Aligned_cols=250 Identities=19% Similarity=0.252 Sum_probs=185.3
Q ss_pred eEEEEEcCc--chhhhHHHHHH-HhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEEeccchhhcccccchhh
Q 006413 339 FHYALFSDN--VLAAAVVVNST-VTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVL 415 (646)
Q Consensus 339 iHIa~~sDn--vlaasVvInSi-l~N~~~pe~ivFHIVtd~ln~~~mk~wf~~n~~~~atI~v~nie~F~~l~~~y~p~L 415 (646)
||||+++|. +.+++|+++|+ +.|+. .+++|||++++++.+..+.....-...+.+|+++.++.- .+
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~---------~~ 69 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPE---------DF 69 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGG---------GG
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHH---------HH
Confidence 699999996 46899999999 99875 479999999999877644333221222445666554310 00
Q ss_pred hhhccccceEEEecccccCCCCccccCCCCcchhhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCeeee
Q 006413 416 KQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGA 495 (646)
Q Consensus 416 ~ql~s~~~~~~~F~~~~~~~~~~lk~r~~~yiS~~ty~Rf~IPeiLP~ldKVLYLDsDvIV~~DLseLw~iDL~gkviAA 495 (646)
+ .++ ....++|..+|+||++|++||+++||||||+|+||++||++||++||+|+++||
T Consensus 70 ~---------------------~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aa 127 (311)
T 1g9r_A 70 A---------------------GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA 127 (311)
T ss_dssp T---------------------TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEE
T ss_pred h---------------------cCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEE
Confidence 0 001 013578889999999999999999999999999999999999999999999999
Q ss_pred eccccccc-cccccccccCCcccccCCCCCCCccccceeecccHHHHHhhHHHHHHHHHHHcCCcccccCCCCchhhhhh
Q 006413 496 VETCGETF-HRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITF 574 (646)
Q Consensus 496 VeDc~~~~-~r~~~yLnfs~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~k~n~~~~l~dqg~Ln~~ll~F 574 (646)
|+||.... ..+...+ ++.+..|||||||||||+++||+.++++++++|++.+.....| ++|+.+|.+|
T Consensus 128 v~d~~~~~~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~~~--~DQd~lN~~f 196 (311)
T 1g9r_A 128 SIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQY--QDQDILNGLF 196 (311)
T ss_dssp EECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTCSS--HHHHHHHHHH
T ss_pred EeccchhhhHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcCcc--CCcCHHHHHH
Confidence 99986421 1111111 3444578999999999999999999999999999877654333 4445566789
Q ss_pred ccccccccCcceeecCCCCC-------C-C--c----ccccCCCeEEEccCCCCCcccCCccchHHHHHHHh
Q 006413 575 WKRTYPLDRFWHVLGLGYNP-------S-V--N----QRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHV 632 (646)
Q Consensus 575 ~g~i~~Ld~~WN~~~lgy~~-------~-i--~----~~~ie~~~IIHY~G~~KPW~~~~~~~y~~lW~kY~ 632 (646)
.|+++.||.+||++..++.. . . . ....++++||||+|+.|||...+.+++.++|..|.
T Consensus 197 ~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~ 268 (311)
T 1g9r_A 197 KGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELA 268 (311)
T ss_dssp TTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHH
T ss_pred cCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHH
Confidence 99999999999998632210 0 0 0 01224789999999999999988877777776655
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.92 E-value=2.4e-25 Score=235.37 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=150.1
Q ss_pred CceEEEEEcCc--chhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEEeccchhhcccccchh
Q 006413 337 RLFHYALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPV 414 (646)
Q Consensus 337 ~~iHIa~~sDn--vlaasVvInSil~N~~~pe~ivFHIVtd~ln~~~mk~wf~~n~~~~atI~v~nie~F~~l~~~y~p~ 414 (646)
+..+|++++|. +.++.|++.|+..|+++. .++| +++++++.+..+...... .. ++.++.. .......
T Consensus 3 ~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~~-~l~v-lv~~~is~~~~~~L~~~~----~~--v~~v~~l---~~~~~~~ 71 (333)
T 1ll2_A 3 DQAFVTLTTNDAYAKGALVLGSSLKQHRTSR-RLAV-LTTPQVSDTMRKALEIVF----DE--VITVDIL---DSGDSAH 71 (333)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCCS-EEEE-EECTTSCHHHHHHHHHHC----SE--EEECCTT---STTSTTH
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHhCCCC-CEEE-EEcCCCCHHHHHHHHHhC----CE--EEEEeec---CCcchhh
Confidence 35788888875 467999999999998753 5666 678888876554433221 12 2222211 0000000
Q ss_pred hhhhccccceEEEecccccCCCCccccCCCCcchhhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCeee
Q 006413 415 LKQLNSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNG 494 (646)
Q Consensus 415 L~ql~s~~~~~~~F~~~~~~~~~~lk~r~~~yiS~~ty~Rf~IPeiLP~ldKVLYLDsDvIV~~DLseLw~iDL~gkviA 494 (646)
+. .+..+ ....+|+||++|++ ++++||||||+|+||.+||++||+++ .+|
T Consensus 72 ~~-----------------------~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~a 121 (333)
T 1ll2_A 72 LT-----------------------LMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELS 121 (333)
T ss_dssp HH-----------------------HHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSE
T ss_pred cc-----------------------ccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----cee
Confidence 00 00011 23578999999996 78999999999999999999999986 578
Q ss_pred eeccccccccccccccccCCcccccCCCCCCCccccceeecccHHHHHhhHHHHHHHHHHHcCCcccccCCCCchhhhhh
Q 006413 495 AVETCGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITF 574 (646)
Q Consensus 495 AVeDc~~~~~r~~~yLnfs~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~k~n~~~~l~dqg~Ln~~ll~F 574 (646)
||+|++ | .+||||||||||++. .+.+++++++..+.. ++.++|+.+|.+|
T Consensus 122 Av~d~~-----------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~~---~~~~DQ~~LN~~f 171 (333)
T 1ll2_A 122 AAPDPG-----------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQGS---FDGGDQGLLNTFF 171 (333)
T ss_dssp EEECSS-----------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTCC---TTSSHHHHHHHHT
T ss_pred EEecCC-----------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcCC---CCCCCHHHHHHHH
Confidence 887742 1 369999999998863 344566666655432 3345556566778
Q ss_pred cccc-----ccccCcceeecCC-CCCCCc-ccccCCCeEEEccCCCCCcccCCcc-----------------chHHHHHH
Q 006413 575 WKRT-----YPLDRFWHVLGLG-YNPSVN-QRDIERAAVIHYNGNMKPWLEINIP-----------------KYRNYWTK 630 (646)
Q Consensus 575 ~g~i-----~~Ld~~WN~~~lg-y~~~i~-~~~ie~~~IIHY~G~~KPW~~~~~~-----------------~y~~lW~k 630 (646)
.+.+ ..||.+||++..+ |...-. .....+++||||+|..|||...+.+ .+.+.||.
T Consensus 172 ~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~ 251 (333)
T 1ll2_A 172 NSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWD 251 (333)
T ss_dssp TTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC--------CCHHHHHHHHH
T ss_pred HhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccccccccHHHHHHHHHH
Confidence 7643 7999999998642 221000 1124579999999999999876322 45678998
Q ss_pred Hhcc
Q 006413 631 HVDY 634 (646)
Q Consensus 631 Y~~~ 634 (646)
+++.
T Consensus 252 ~~~~ 255 (333)
T 1ll2_A 252 IFTT 255 (333)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8864
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.89 E-value=5e-23 Score=211.41 Aligned_cols=208 Identities=16% Similarity=0.166 Sum_probs=136.5
Q ss_pred EEEEcCc--chhhhHHHHHHHhhcCCCCcEEEEEEeCcccHHHHHHHHhhCCCCCceEEEEeccchhhcccccchhhhhh
Q 006413 341 YALFSDN--VLAAAVVVNSTVTHAKHPSNHVFHIVTDRLNYAAMRMWFLANPPGRATVQVQNIEEFTWLNSSYSPVLKQL 418 (646)
Q Consensus 341 Ia~~sDn--vlaasVvInSil~N~~~pe~ivFHIVtd~ln~~~mk~wf~~n~~~~atI~v~nie~F~~l~~~y~p~L~ql 418 (646)
+.+++|. +.++.|++.|+..+++. ..+++ +++++++.+..+..-.. +.. ++.++..+ ......++.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~~~L~~~----~~~--vi~V~~l~---~~~~~~~~~- 75 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMRKVLETV----FDE--VIMVDVLD---SGDSAHLTL- 75 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHHH----SSE--EEECCCCC---CCCHHHHHH-
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHHHHHHHc----CCe--EEEeeecC---Ccchhhhhh-
Confidence 3456664 46799999999999875 24444 66788887655443322 112 22222111 000000000
Q ss_pred ccccceEEEecccccCCCCccccCCCCcchhhhhHHhhhhccccCCCeEEEEecCeeeccCchhhhccCCCCCeeeeecc
Q 006413 419 NSQSMIDYYFRAHRANSDSNLKFRNPKYLSILNHLRFYLPEVFPRLNKVLFLDDDVVVQKDLSGLWSIDLKGKVNGAVET 498 (646)
Q Consensus 419 ~s~~~~~~~F~~~~~~~~~~lk~r~~~yiS~~ty~Rf~IPeiLP~ldKVLYLDsDvIV~~DLseLw~iDL~gkviAAVeD 498 (646)
+..+. + ..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||+|
T Consensus 76 ----------------------~~rp~-~-~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d 126 (263)
T 3u2u_A 76 ----------------------MKRPE-L-GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPD 126 (263)
T ss_dssp ----------------------TTCTT-G-GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEEC
T ss_pred ----------------------hcCcc-h-hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEecc
Confidence 01122 1 3588999999987 5999999999999999999999987 4788877
Q ss_pred ccccccccccccccCCcccccCCCCCCCccccceeecccHHHHHhhHHHHHHHHHHHcCCcccccCCCCchhhhhhcc--
Q 006413 499 CGETFHRFDRYLNFSNPLISKNFDPRACGWAYGMNIFDLDEWRRQNITDVYHTWQKMNHDRQLWKLGTLPPGLITFWK-- 576 (646)
Q Consensus 499 c~~~~~r~~~yLnfs~p~i~~~f~~~~~yFNSGVlLIDL~kWRk~nit~k~~~~~k~n~~~~l~dqg~Ln~~ll~F~g-- 576 (646)
.+ . ..||||||||||++. ++.+++++++...... +.++|..+|.+|.+
T Consensus 127 ~~--------------------~---~~~fNsGv~li~p~~----~~~~~l~~~~~~~~~~---~~~DQd~LN~~f~~w~ 176 (263)
T 3u2u_A 127 PG--------------------W---PDCFNSGVFVYQPSV----ETYNQLLHLASEQGSF---DGGDQGILNTFFSSWA 176 (263)
T ss_dssp TT--------------------S---TTSEEEEEEEECCCH----HHHHHHHHHHHHHCCT---TSSHHHHHHHHTTTTT
T ss_pred CC--------------------C---CccccCeEEEEcccH----HHHHHHHHHHHhcCCC---CcccHHHHHHHhcccc
Confidence 42 1 258999999999964 5667777777654432 33445555578877
Q ss_pred ---ccccccCcceeecC-CCCCCCc-ccccCCCeEEEccCCCCCcccC
Q 006413 577 ---RTYPLDRFWHVLGL-GYNPSVN-QRDIERAAVIHYNGNMKPWLEI 619 (646)
Q Consensus 577 ---~i~~Ld~~WN~~~l-gy~~~i~-~~~ie~~~IIHY~G~~KPW~~~ 619 (646)
.++.||.+||++.. .|...-. ....++++||||+|+.|||...
T Consensus 177 ~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 177 TTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp TSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred ccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCC
Confidence 78999999999853 2221000 1124579999999999999874
No 5
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=46.64 E-value=18 Score=27.75 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=33.6
Q ss_pred hhhhHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 006413 195 LKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (646)
Q Consensus 195 ~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 231 (646)
|+.|+++-+.|+.-|+..+.-.=+.=|.++++|+++-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988888899999999753
No 6
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=38.93 E-value=24 Score=27.42 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.9
Q ss_pred HhhhhHHHHHhhccccccCCchHHHHHHHHHHHHHHH
Q 006413 194 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQR 230 (646)
Q Consensus 194 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~ 230 (646)
=|.+|+++-+.|+.-|+..+.-.=+.=|..+++|+++
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ 42 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQD 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3789999999999999999998888888888888875
No 7
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=37.70 E-value=24 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=34.1
Q ss_pred HhhhhHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 006413 194 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (646)
Q Consensus 194 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 231 (646)
=|.+|+++-+.|+--|+..+...=+.=|..+++|+++-
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 48899999999999999999988888899999998853
No 8
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=33.64 E-value=33 Score=27.47 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.6
Q ss_pred HhhhhHHHHHhhccccccCCchHHHHHHHHHHHHHHHh
Q 006413 194 QLKDQLIKAKVYLSLPAMRNNANFVRELRLRIKEVQRA 231 (646)
Q Consensus 194 ~~~dq~~~a~~y~~~a~~~~~~~~~~el~~~~~e~~~~ 231 (646)
-|..|+++-|+|.--|+..+...=+.=|..+++|++.-
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~e 50 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHT 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 58899999999999999999988888888999888753
No 9
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=24.26 E-value=2e+02 Score=28.16 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=48.4
Q ss_pred cccccCCchHHHHHHHHHHHHHHHhhcccCCCCCCChhHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHH-
Q 006413 207 SLPAMRNNANFVRELRLRIKEVQRALGDATKDSDLPRIANDRLKAMEQSLAKGKQIQDDCAAVVKKLRAMLHSTEEQLR- 285 (646)
Q Consensus 207 ~~a~~~~~~~~~~el~~~~~e~~~~~~~~~~d~~l~~~~~~~~~~m~~~~~~~~~~~~d~~~~~~kl~~~l~~~e~~~~- 285 (646)
.|...+....|++.||++|.+. ||++..+.++.|..+=.+.|+...|-..=-+-++.+ .++...
T Consensus 143 aIST~G~sP~la~~iR~~ie~~------------lp~~~~~~~~~~~~~R~~vk~~~~~~~~Rr~~~~~~---~~~~~~~ 207 (223)
T 3dfz_A 143 AISTDGASPLLTKRIKEDLSSN------------YDESYTQYTQFLYECRVLIHRLNVSKSRKHELLTEI---IDDQYRL 207 (223)
T ss_dssp EEECTTSCHHHHHHHHHHHHHH------------SCTHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHT---CSHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---hcchhhc
Confidence 4555566788888888888776 566666666666666666666655544322223322 233333
Q ss_pred HHHHHHHHHHHHhh
Q 006413 286 VHKKQTLFLTQLTA 299 (646)
Q Consensus 286 ~~~~q~~~~~~la~ 299 (646)
...+|..|+..|..
T Consensus 208 ~~~~~~~~~~~l~~ 221 (223)
T 3dfz_A 208 SLVKQREFLQQIEK 221 (223)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHh
Confidence 66788888877754
No 10
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.89 E-value=75 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhhccC--------------------CccHHHHHHHHHHHHHHHHH
Q 006413 244 IANDRLKAMEQSLAKGKQI--------------------QDDCAAVVKKLRAMLHSTEE 282 (646)
Q Consensus 244 ~~~~~~~~m~~~~~~~~~~--------------------~~d~~~~~~kl~~~l~~~e~ 282 (646)
+--.|++..|.++-.+... .-+-..+.+|+.++|++|||
T Consensus 43 FYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 43 FYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHHhcccc
Confidence 5667888888888776552 11245678999999999997
Done!