BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006415
(646 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/638 (68%), Positives = 520/638 (81%), Gaps = 4/638 (0%)
Query: 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLL 71
+R+VGL+YDE MCKH+TPDG+ HPE P+RI+ IW KLQ AG+ QRCVVL + +A+DK+L
Sbjct: 24 QRKVGLIYDETMCKHDTPDGEDHPECPDRIRVIWEKLQLAGVSQRCVVLGSSKAEDKHLQ 83
Query: 72 SVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEG 131
VHT++HVNL+K+IS+KQ D RR+RIAS+LNSIYLN GSSEAAYLAAGSV+++AE+VAEG
Sbjct: 84 LVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKLAEKVAEG 143
Query: 132 ELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGN 191
EL+ FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+LG+ KILIVDWDVHHGN
Sbjct: 144 ELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGN 203
Query: 192 STQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDAD 251
TQKMFWKDPRVLFFSVHRHE+G FYPA DDG Y M+GEGPG G+NINVPW+ GRCGDAD
Sbjct: 204 GTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDAD 263
Query: 252 YLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKI 311
YLA WDHIL+PVA++F PD+I +SAGFDAA DPLGGC VTPYGYSVMLKKLM+FAQGKI
Sbjct: 264 YLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFAQGKI 323
Query: 312 VLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTL 371
VLALEGGYNL SI+ S LAC+ VLLEDK + G EAYPFESTWRVIQAVRK+L +WP+L
Sbjct: 324 VLALEGGYNLDSIAKSSLACVQVLLEDKQIQGPPEAYPFESTWRVIQAVRKRLCTYWPSL 383
Query: 372 ADELPTKLTSLKAP-PAHMISSSDSEDEDTKVETLEAVLQVALSKLK--VDDGHAELGMA 428
ADEL KL + K P P +ISSSDSE ED L+ + ++++ + + + H +
Sbjct: 384 ADELSWKLINQKTPTPIILISSSDSETEDNAQGLLDQMSKLSIENPQGTLLENHQVEPAS 443
Query: 429 TPWRSELSKVDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFP 488
T WR++L+KVDV+YASFGSNMWK RFLCYI+GGQV+G++K C GS D++PPKE +W+TFP
Sbjct: 444 TSWRADLAKVDVWYASFGSNMWKPRFLCYIQGGQVDGLKKVCVGSMDKSPPKETVWETFP 503
Query: 489 HHLFFGHDSSHTWGPGGVAFLNPECDCRHKAYLCLYRITLEQFNDVLLQENVYSDDVSSP 548
H LFFG +SS WG GGVAF NP + + ++CLYRITLEQFNDVL QEN + D SP
Sbjct: 504 HRLFFGRESSVGWGVGGVAFTNPLANLIDQTHMCLYRITLEQFNDVLSQENGLNVDSDSP 563
Query: 549 LFDTNDLNSVANKKAVSLEALKNGWYHNVVYLGKEHGIPILTMTCSLSAVGKFKSGEFPL 608
+FD L V NK ++ LEA N WY NVV LGKE IPILTMTC+LSAV KFKSGE P+
Sbjct: 564 VFDLAALQLVDNKGSI-LEAPLNSWYGNVVCLGKERDIPILTMTCTLSAVEKFKSGEIPI 622
Query: 609 RAPAPPYTNTLIKGLVEGKQLSEEEAKAYIHEASTKRL 646
R PA Y NTLI+GLVEG +LS+EEA+AYI +A +K L
Sbjct: 623 RPPAKAYANTLIRGLVEGGRLSKEEAEAYIDKAVSKPL 660
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1
Length = 682
Score = 580 bits (1495), Expect = e-164, Method: Compositional matrix adjust.
Identities = 268/381 (70%), Positives = 318/381 (83%), Gaps = 1/381 (0%)
Query: 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLL 71
+R+VGL+YDE MCKH+TP+G E P+RI+ IW KLQ AG+ QRCVVL +A+DK+L
Sbjct: 57 QRKVGLVYDETMCKHDTPNGKVDVECPDRIRVIWEKLQLAGVTQRCVVLGGSKAEDKHLK 116
Query: 72 SVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEG 131
VHT+ HVNL+K+IS+K+ DSRR++IAS+L+SIYLN GSSEAAYLAAGSV++VAE+VAEG
Sbjct: 117 LVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLNGGSSEAAYLAAGSVVKVAEKVAEG 176
Query: 132 ELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGN 191
EL+ FAIVRPPGHHAE DEAMGFCL+NNVAVAASFLLNERP+L + KILIVDWD+HHGN
Sbjct: 177 ELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGN 236
Query: 192 STQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDAD 251
TQKMFWKD RVL FSVHRH+ G+FYP DDG + M+GEGPG G+NINVPWE G CGDAD
Sbjct: 237 GTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDAD 296
Query: 252 YLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKI 311
YLAVW+HIL+PV K+F PDII++SAGFDAA GDPLGGC VTPYGYSVMLKKLM+FA GKI
Sbjct: 297 YLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLMEFAHGKI 356
Query: 312 VLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTL 371
VLALEGGYNL S+ S LAC+ VLLEDK + GSSE YP EST RVIQAVR++L +WP+L
Sbjct: 357 VLALEGGYNLESLGKSSLACVQVLLEDKQIHGSSETYPLESTRRVIQAVRERLCTYWPSL 416
Query: 372 ADELPTKLTSLKAPPAHMISS 392
+ + +LK P A S+
Sbjct: 417 DASMASN-ENLKNPSAERNSA 436
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 162/367 (44%), Positives = 226/367 (61%), Gaps = 15/367 (4%)
Query: 11 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNL 70
++ R GL+YDE+M H ++HPE P RI I L+ G+ RC++L A+ A D L
Sbjct: 476 LQNRTGLVYDEKMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALDSEL 535
Query: 71 LSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE 130
L+ H+ +V ++ + K R + +SIY+ + A LA G+ + E V
Sbjct: 536 LTCHSAEYVEHLRT-TEKMKTRDLHREGANFDSIYICPSTFACAKLATGAACRLVEAVLS 594
Query: 131 GELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASF--LLNERPELGINKILIVDWDVH 188
GE+ + A+VRPPGHHAEP+ A GFC +N+VAVAA ++ R +ILIVDWDVH
Sbjct: 595 GEVLNGIAVVRPPGHHAEPNAACGFCFFNSVAVAARHAQIIAGR----ALRILIVDWDVH 650
Query: 189 HGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCG 248
HGN TQ +F DP VL+ S+HR++ GTF+P D+G + +G G+G+ +NVPW R G
Sbjct: 651 HGNGTQHIFEDDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTVNVPWNGPRMG 710
Query: 249 DADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ 308
DADYLA W ++LP+A +F P++++ISAGFDAA GDPLGGC+VTP GY+ + LM A
Sbjct: 711 DADYLAAWHRLVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAG 770
Query: 309 GKIVLALEGGYNLGSISNSVLACMNVLLEDKP----VAGSSEAYPFESTWRVIQAVRKKL 364
G+I+L LEGGYNL SIS S+ AC + LL D P + ++ S VIQ RK
Sbjct: 771 GRIILILEGGYNLASISESMAACTHSLLGDPPPQLTLLRPPQSGALVSISEVIQVHRK-- 828
Query: 365 SAFWPTL 371
+W +L
Sbjct: 829 --YWRSL 833
Score = 268 bits (685), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 209/357 (58%), Gaps = 4/357 (1%)
Query: 15 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVH 74
GL++DE++ + D PE+P R+ AI +L G+ RCV A+ A+ + L+ VH
Sbjct: 85 TGLVFDEQLNDFHCLWDDSFPESPERLHAIREQLILEGLLGRCVSFQARFAEKEELMLVH 144
Query: 75 TENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELN 134
+ +++L++ R +A +S+YL+ S A LA GSV+ + + + E+
Sbjct: 145 SLEYIDLMETTQYMNEGELR-VLAETYDSVYLHPNSYSCACLATGSVLRLVDALMGAEIR 203
Query: 135 SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQ 194
+ A++RPPGHHA+ + G+C++N++AVAA + + I ++LIVDWDVHHG TQ
Sbjct: 204 NGMAVIRPPGHHAQHNLMDGYCMFNHLAVAARYAQKKH---RIQRVLIVDWDVHHGQGTQ 260
Query: 195 KMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLA 254
+F +DP VL+FS+HR+E G F+P ++ IG G G GY INVPW DADY+A
Sbjct: 261 FIFDQDPSVLYFSIHRYEHGRFWPHLKASNWSTIGFGQGQGYTINVPWNQTGMRDADYIA 320
Query: 255 VWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLA 314
+ HILLPVA +F P +++++AGFDA GDP G TP G++ + LM A GK++L+
Sbjct: 321 AFLHILLPVASEFQPQLVLVAAGFDALHGDPKGEMAATPAGFAHLTHLLMGLAGGKLILS 380
Query: 315 LEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTL 371
LEGGYNL +++ V A ++ LL D S P S I + L FW L
Sbjct: 381 LEGGYNLRALAKGVSASLHTLLGDPCPMLESCVVPCASAQTSIYCTLEALEPFWEVL 437
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 148/326 (45%), Positives = 207/326 (63%), Gaps = 13/326 (3%)
Query: 11 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNL 70
++ R GL+YD+ M H +HPE P RI I +L+ G+ RC+ L + A + L
Sbjct: 477 LQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAEL 536
Query: 71 LSVHTENHVNLIKNISSKQFDSRR-DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVA 129
L+ H+ +V ++ ++++ +R R +S +SIY+ + A LA G+ + E V
Sbjct: 537 LTCHSAEYVGHLR--ATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVL 594
Query: 130 EGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGIN----KILIVDW 185
GE+ + A+VRPPGHHAE D A GFC +N+VAVAA R I+ +ILIVDW
Sbjct: 595 SGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAA------RHAQTISGHALRILIVDW 648
Query: 186 DVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENG 245
DVHHGN TQ MF DP VL+ S+HR++ GTF+P D+G + IG G G+ +NV W
Sbjct: 649 DVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGP 708
Query: 246 RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMD 305
R GDADYLA W ++LP+A +F P+++++SAGFDAA GDPLGGC+V+P GY+ + LM
Sbjct: 709 RMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMG 768
Query: 306 FAQGKIVLALEGGYNLGSISNSVLAC 331
A G+I+L LEGGYNL SIS S+ AC
Sbjct: 769 LASGRIILILEGGYNLTSISESMAAC 794
Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 139/357 (38%), Positives = 206/357 (57%), Gaps = 4/357 (1%)
Query: 15 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVH 74
GL+ DE++ + + D PE P R+ AI +L G+ RCV A+ A+ + L+ VH
Sbjct: 86 TGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVH 145
Query: 75 TENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELN 134
+ +++L++ R +A +S+YL+ S A LA+GSV+ + + V E+
Sbjct: 146 SLEYIDLMETTQYMNEGELR-VLADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIR 204
Query: 135 SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQ 194
+ AI+RPPGHHA+ G+C++N+VAVAA + + I ++LIVDWDVHHG TQ
Sbjct: 205 NGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHR---IRRVLIVDWDVHHGQGTQ 261
Query: 195 KMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLA 254
F +DP VL+FS+HR+E G F+P ++ G G G GY INVPW DADY+A
Sbjct: 262 FTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIA 321
Query: 255 VWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLA 314
+ H+LLPVA +F P +++++AGFDA GDP G TP G++ + LM A GK++L+
Sbjct: 322 AFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILS 381
Query: 315 LEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTL 371
LEGGYNL +++ V A ++ LL D S P S + + L FW L
Sbjct: 382 LEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEALEPFWEVL 438
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 286 bits (731), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 165/425 (38%), Positives = 232/425 (54%), Gaps = 28/425 (6%)
Query: 4 KSGEGRTIKRRVGLLYDERMCKHNT-PDGDYHPENPNRIKAIWNKLQAAG----IPQRCV 58
+S E I ++ GL YD RM H T + D HPE+P R+ ++ ++ AG +P
Sbjct: 46 ESHEMSQILKKSGLCYDPRMRFHATLSEVDDHPEDPRRVLRVFEAIKKAGYVSNVPSPSD 105
Query: 59 V---LNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAY 115
V + A+EA + LL VH++ + + N + K + +S+Y N S+ A
Sbjct: 106 VFLRIPAREATLEELLQVHSQEMYDRVTN-TEKMSHEDLANLEKISDSLYYNNESAFCAR 164
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
LA GS IE V G++ +AFA+VRPPGHHAEP + GFCL+NNV+V A +L P+
Sbjct: 165 LACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPD- 223
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
I ++LIVDWD+HHGN TQ F+ DP VL+ S+HR+E G FYP + G GEGPGLG
Sbjct: 224 KIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGTNYGCAENCGEGPGLG 283
Query: 236 YNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYG 295
+N+PW GD DY+ + +++PVA +F PD++I+S GFDAAAGD +G +TP
Sbjct: 284 RTVNIPWSCAGMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAA 343
Query: 296 YSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
Y+ M + LM A GK+ ++LEGGYNL SIS S LA LL P Y
Sbjct: 344 YAHMTQMLMGLADGKVFISLEGGYNLDSISTSALAVAQSLLGIPP-GRLHTTYACPQAVA 402
Query: 356 VIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTKVETLEAVLQVALSK 415
I V K S +W + P H D+ +D V+ L V++ +K
Sbjct: 403 TINHVTKIQSQYWRCMR-------------PKHF----DANPKDAHVDRLHDVIRTYQAK 445
Query: 416 LKVDD 420
+D
Sbjct: 446 KLFED 450
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3
Length = 1084
Score = 278 bits (712), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 249/427 (58%), Gaps = 42/427 (9%)
Query: 15 VGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL+YD M KH G HPE+ RI++IW++LQ G+ +C + ++A + L +
Sbjct: 654 TGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQT 713
Query: 73 VHTENHVNL--IKNISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAA 114
VH+E H L ++ ++ DS++ + L S+++ NE S+ AA
Sbjct: 714 VHSEAHTLLYGTNPLNRQKLDSKK--LLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAA 771
Query: 115 YLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPE 174
LA G V+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVAA LL +R
Sbjct: 772 RLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAK-LLQQR-- 828
Query: 175 LGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGL 234
L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+
Sbjct: 829 LSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGV 886
Query: 235 GYNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGC 289
G+N+N+ + G GDA+YLA + +++P+A +F PD++++S+GFDA G PLGG
Sbjct: 887 GFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGY 946
Query: 290 RVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL--EDKPVAGSS-E 346
++ + + K+LM A G+IVLALEGG++L +I ++ AC++ LL E P+ +
Sbjct: 947 NLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQ 1006
Query: 347 AYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTKVETLE 406
P + R ++ V + S +W L T SL I + E+E+ + T
Sbjct: 1007 QRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSL-------IEAQTCENEEAETVTAM 1059
Query: 407 AVLQVAL 413
A L V +
Sbjct: 1060 ASLSVGV 1066
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2
Length = 952
Score = 278 bits (711), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 228/387 (58%), Gaps = 32/387 (8%)
Query: 9 RTIKRRVGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAK 66
RT+ GL+YD M KH GD HPE+ RI++IW++LQ G+ +C L ++A
Sbjct: 514 RTLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKAS 573
Query: 67 DKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKL-----------------NSIYLNEG 109
+ L SVH+E HV L + ++A L ++I+
Sbjct: 574 LEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELH 633
Query: 110 SSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLL 169
SS AA AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L
Sbjct: 634 SSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQ 693
Query: 170 NERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIG 229
+ +KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P + G +G
Sbjct: 694 QQS---KASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVG 748
Query: 230 EGPGLGYNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD-- 284
G G G+N+NV W G GD +YLA + +++P+A++F PD++++SAGFDAA G
Sbjct: 749 AGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPA 808
Query: 285 PLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGS 344
PLGG V+ + M ++LM+ A G +VLALEGG++L +I ++ AC+ LL ++ S
Sbjct: 809 PLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLS 868
Query: 345 SEAY---PFESTWRVIQAVRKKLSAFW 368
E + P + R ++AV + S +W
Sbjct: 869 EEGWKQKPNLNAIRSLEAVIRVHSKYW 895
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/420 (38%), Positives = 246/420 (58%), Gaps = 33/420 (7%)
Query: 15 VGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +
Sbjct: 652 TGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQT 711
Query: 73 VHTENHVNL--IKNISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSV 121
VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V
Sbjct: 712 VHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCV 771
Query: 122 IEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKIL 181
+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+AA LL +R L ++KIL
Sbjct: 772 VELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAK-LLQQR--LNVSKIL 828
Query: 182 IVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVP 241
IVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G+N+N+
Sbjct: 829 IVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMA 886
Query: 242 WENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCRVTPYGY 296
+ G GDA+YLA + +++P+A +F PD++++S+GFDA G PLGG ++ +
Sbjct: 887 FTGGLDPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCF 946
Query: 297 SVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL--EDKPVAGSS-EAYPFEST 353
+ K+LM A G+IVLALEGG++L +I ++ AC++ LL E +P+ P +
Sbjct: 947 GYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANA 1006
Query: 354 WRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTKVETLEAVLQVAL 413
++ V S +W L PT SL I + E+E+ + T A L V +
Sbjct: 1007 VHSMEKVMGIHSEYWRCLQRLSPTVGHSL-------IEAQKCENEEAETVTAMASLSVGV 1059
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/379 (40%), Positives = 216/379 (56%), Gaps = 25/379 (6%)
Query: 15 VGLLYDERMCKHNT--PDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL YD M +H + H EN RI+ IW+KL G +C + AK+A + L
Sbjct: 482 TGLGYDPLMARHECVCSNNSNHVENGERIQRIWSKLTEEGHVAKCERITAKKASLEQLQM 541
Query: 73 VHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAG 119
VH++ + + + + D+ + L + Y N+ S++ AA LAAG
Sbjct: 542 VHSQTYTTFFAVSPTACLKIDANALPLKRFLQLPCGGIGIDSDTYFNDASTQIAARLAAG 601
Query: 120 SVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINK 179
++IE++ +VAEG L + FA +RPPGHHAE ++A+GFC +NNVAV A L + P + K
Sbjct: 602 TLIELSSQVAEGRLKNGFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYP-VQCAK 660
Query: 180 ILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNIN 239
I I+DWDVHHGN TQ F DP VL+ S+HRH+ G F+P G T IG+G G G+++N
Sbjct: 661 IAIIDWDVHHGNGTQLSFDDDPNVLYMSLHRHDNGNFFPGT--GSVTEIGKGAGKGFSVN 718
Query: 240 VPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCRVTPYGYS 297
+P+ G DA+YLA W ++ PV F PD I++SAGFDA G + LGG +TP +
Sbjct: 719 IPFSGGVMKDAEYLAAWRTVVEPVLASFCPDFILVSAGFDACHGHVNALGGYEITPEMFG 778
Query: 298 VMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAG-----SSEAYPFES 352
M K L+ +A GK+VLALEGGYNL SIS + C+ L+ + AG S E P +S
Sbjct: 779 YMTKCLLSYANGKVVLALEGGYNLDSISAAAEQCVQALIGESDDAGRLCTDSLENLPNQS 838
Query: 353 TWRVIQAVRKKLSAFWPTL 371
+Q V FWP L
Sbjct: 839 ALETLQKVIAIHKGFWPAL 857
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 276 bits (705), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 217/340 (63%), Gaps = 23/340 (6%)
Query: 15 VGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +
Sbjct: 651 TGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQT 710
Query: 73 VHTENHVNL--IKNISSKQFDSRRDRIASKL---------NSIYLNEGSSEAAYLAAGSV 121
VH+E H L ++ ++ DS + +L ++I+ SS AA LA G V
Sbjct: 711 VHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCV 770
Query: 122 IEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKIL 181
+E+ +VA GEL + FA+VRPPGHHAE MGFC +N+VAVAA LL +R L ++KIL
Sbjct: 771 VELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAK-LLQQR--LNVSKIL 827
Query: 182 IVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVP 241
IVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G+N+N+
Sbjct: 828 IVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGS--GAPDEVGTGPGVGFNVNMA 885
Query: 242 WENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCRVTPYGY 296
+ G GDA+YLA + +++P+A +F PD++++S+GFDA G PLGG ++ +
Sbjct: 886 FTGGLEPPMGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCF 945
Query: 297 SVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
+ K+LM A G++VLALEGG++L +I ++ AC++ LL
Sbjct: 946 GYLTKQLMGLAGGRLVLALEGGHDLTAICDASEACVSALL 985
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1
Length = 1111
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 215/346 (62%), Gaps = 29/346 (8%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +
Sbjct: 672 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 731
Query: 73 VHTENHVNL--IKNISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAY 115
VH+E H L ++ ++ DS++ I+ K+ ++++ SS A
Sbjct: 732 VHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVR 791
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
+A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L
Sbjct: 792 MAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKL 848
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
+ K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G
Sbjct: 849 NVGKVLIVDWDIHHGNGTQQAFYDDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGMG 906
Query: 236 YNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCR 290
YN+NV W G GD +YL + +++P+A +F PD++++SAGFDA G PLGG
Sbjct: 907 YNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYS 966
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
VT + + ++LM A G++VLALEGG++L +I ++ AC++ LL
Sbjct: 967 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1012
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/379 (40%), Positives = 215/379 (56%), Gaps = 25/379 (6%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL YD+ M +H G+ H EN RI++IW+KL G Q+C + AK+A + L
Sbjct: 462 TGLGYDQAMVRHECCCGNNASHVENGGRIQSIWSKLIEHGHVQKCEKVTAKKASLEQLQL 521
Query: 73 VHTENHVNL--IKNISSKQFDSRRDRIASKL----------NSIYLNEGSSE-AAYLAAG 119
VH++ + + + + D+ + L + Y N+ S++ AA LAAG
Sbjct: 522 VHSQTYTTFFAVSPTACLKIDANSLPLKRFLQLPCGGIGVDSDTYFNDASTQTAARLAAG 581
Query: 120 SVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINK 179
++IE++ +VAEG L + FA +RPPGHHAE ++AMGFC +NNVAVA L + P K
Sbjct: 582 TLIELSSQVAEGRLKNGFACIRPPGHHAEHEQAMGFCFFNNVAVAVKVLQTKYPA-QCAK 640
Query: 180 ILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNIN 239
I I+DWDVHHGN TQ F DP VL+ S+HRH+ G F+P G T +G+ G +N
Sbjct: 641 IAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGT--GSVTEVGKNDAKGLTVN 698
Query: 240 VPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDP--LGGCRVTPYGYS 297
VP+ D +YLA W ++ PV F PD II+SAGFDA G P LGG VTP +
Sbjct: 699 VPFSGDVMRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFDACHGHPNALGGYEVTPEMFG 758
Query: 298 VMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAG-----SSEAYPFES 352
M K L+++A GK+VLALEGGY+L SIS + C+ L+ + AG + E+ P S
Sbjct: 759 YMTKSLLNYASGKVVLALEGGYDLKSISEAAQQCVQALIGESDDAGRLSSVALESLPNPS 818
Query: 353 TWRVIQAVRKKLSAFWPTL 371
+Q V ++WP L
Sbjct: 819 AVETLQKVIAIHKSYWPAL 837
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 274 bits (700), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/354 (42%), Positives = 217/354 (61%), Gaps = 31/354 (8%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
G+ YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +
Sbjct: 633 TGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQL 692
Query: 73 VHTENHVNL--IKNISSKQFDSR------RDRIASKL---------NSIYLNEGSSEAAY 115
VH+E+H L + ++ D R + S L ++I+ SS AA
Sbjct: 693 VHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAAR 752
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
+A G VIE+A +VA GEL + FA+VRPPGHHAE AMGFC +N+VA+ A +L R +L
Sbjct: 753 MAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYL---RDQL 809
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
I+KILIVD DVHHGN TQ+ F+ DP +L+ S+HR++ G F+P + G +G G G G
Sbjct: 810 NISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGS--GAPNEVGTGLGEG 867
Query: 236 YNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD--PLGGCR 290
YNIN+ W G GD +YL + I+ PVAK+F PD++++SAGFDA G PLGG +
Sbjct: 868 YNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHTPPLGGYK 927
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL--EDKPVA 342
VT + + K+LM A G++VLALEGG++L +I ++ AC+N LL E +P+A
Sbjct: 928 VTAKCFGHLTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALLGNELEPLA 981
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2
Length = 938
Score = 273 bits (698), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 226/381 (59%), Gaps = 32/381 (8%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL+YD M KH GD HPE+ RI++IW++LQ G+ +C L ++A + L S
Sbjct: 507 TGLVYDSVMLKHQCSCGDNSKHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQS 566
Query: 73 VHTENHVNL--IKNISSKQFDSRR---------------DRIASKLNSIYLNEGSSEAAY 115
VH+E HV L +S + D+ + + ++I+ SS AA
Sbjct: 567 VHSERHVLLYGTNPLSRLKLDNGKLTGLLAQRTFVMLPCGGVGVDTDTIWNELHSSNAAR 626
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
AAGSV ++A +VA EL + FA+VRPPGHHA+ AMGFC +N+VA+A L
Sbjct: 627 WAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQHG--- 683
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
+KILIVDWDVHHGN TQ+ F++DP VL+ S+HRH+ G F+P + G +G G G G
Sbjct: 684 KASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGS--GAVDEVGTGSGEG 741
Query: 236 YNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD--PLGGCR 290
+N+NV W G GD +YLA + +++P+A++F PD++++SAGFDAA G PLGG
Sbjct: 742 FNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYH 801
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAY-- 348
V+ + M ++LM+ A G +VLALEGG++L +I ++ AC+ LL +K S E++
Sbjct: 802 VSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQ 861
Query: 349 -PFESTWRVIQAVRKKLSAFW 368
P S R ++AV + +W
Sbjct: 862 KPNLSAIRSLEAVVRVHRKYW 882
>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
Length = 552
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/375 (44%), Positives = 218/375 (58%), Gaps = 27/375 (7%)
Query: 19 YDERMCKHNTPD--GDYHPENPNRIKAIWNKLQAAGI-PQRCVVLNAKEAKDKNLLSVHT 75
+DERM H+ + HPE P+R++AI L AG+ P RC+ +NA+E + L VHT
Sbjct: 154 FDERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPINAREITKQELQMVHT 213
Query: 76 ENHVNLIKNISSKQFDSRRDRIASKLNS-IYLNEGSSEAAYLAAGSVIEVAERVAEGELN 134
HV+ + D+ + S S Y NE S+ AA LAAG ++A + G +
Sbjct: 214 SEHVDAV--------DTTSQLLYSYFTSDTYANEYSARAARLAAGLCADLATDIFTGRVK 265
Query: 135 SAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQ 194
+ FA+VRPPGHHA AMGFCL+NN AVAA + K+LIVDWDVHHGN TQ
Sbjct: 266 NGFALVRPPGHHAGVRHAMGFCLHNNAAVAALVAQAAGAK----KVLIVDWDVHHGNGTQ 321
Query: 195 KMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLA 254
++F ++ VL+ S+HRHE G FYP G +G G GY +NVPW G GD DY+
Sbjct: 322 EIFEQNKSVLYISLHRHEGGNFYPGT--GAADEVGSNGGEGYCVNVPWSCGGVGDKDYIF 379
Query: 255 VWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLA 314
+ H++LP+A F PD +IISAGFDAA GDPLG C VTP GYS M + L D GK+++
Sbjct: 380 AFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVI 439
Query: 315 LEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRV--IQAVRKKLS---AFWP 369
LEGGYNL SIS S A + VLL + P P +T V +Q V L+ FWP
Sbjct: 440 LEGGYNLRSISASATAVIKVLLGENP----ENELPIATTPSVAGLQTVLDVLNIQLEFWP 495
Query: 370 TLADELPTKLTSLKA 384
+LA L+ L+A
Sbjct: 496 SLAISYSKLLSELEA 510
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1
Length = 1080
Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 142/347 (40%), Positives = 217/347 (62%), Gaps = 32/347 (9%)
Query: 15 VGLLYDERMCKHNTPDGDY--HPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
GL+YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + L +
Sbjct: 650 TGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQT 709
Query: 73 VHTENHVNL--IKNISSKQFDSRRDRIASKLNSIYL---------------NE-GSSEAA 114
VH+E H L ++ ++ DS++ + L S+++ NE SS AA
Sbjct: 710 VHSEAHTLLYGTNPLNRQKLDSKK--LLGSLTSMFVRLPCGGVGVDSDTIWNEVHSSGAA 767
Query: 115 YLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPE 174
LA G VIE+ +VA GEL + FA+VRPPGHHAE MGFC +N+VA+AA LL +R
Sbjct: 768 RLAVGCVIELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAIAAK-LLQQR-- 824
Query: 175 LGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGL 234
L ++KILIVDWDVHHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G G G+
Sbjct: 825 LNVSKILIVDWDVHHGNGTQQAFYNDPNVLYISLHRYDDGNFFPGS--GAPDEVGTGAGV 882
Query: 235 GYNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGC 289
G+N+N+ + G GD +YL + +++P+A +F PD++++S+GFDA G PLGG
Sbjct: 883 GFNVNMAFTGGLDPPMGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGY 942
Query: 290 RVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
++ + + K+LM A G++VLALEGG++L +I ++ AC++ LL
Sbjct: 943 NLSAKCFGYLTKQLMGLAGGRVVLALEGGHDLTAICDASEACVSALL 989
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/347 (40%), Positives = 201/347 (57%), Gaps = 24/347 (6%)
Query: 14 RVGLLYDERMCKHNTPDGDY------HPENPNRIKAIWNKLQAAGIPQRCVV-------- 59
+ GL YD RM H Y HPE+P RI I+ L G+ +
Sbjct: 57 KTGLCYDVRMRYHAKIFTSYFEYIDPHPEDPRRIYRIYKILAENGLINDPTLSGVDDLGD 116
Query: 60 ----LNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRI--ASKLNSIYLNEGSSEA 113
+ + A + +L VHT+ H+ I+ S + SR + + K +S+Y N S +
Sbjct: 117 LMLKIPVRAATSEEILEVHTKEHLEFIE---STEKMSREELLKETEKGDSVYFNNDSYAS 173
Query: 114 AYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERP 173
A L G IE + V EG + ++ A+VRPPGHHAEP A GFCL++NVAVAA +L P
Sbjct: 174 ARLPCGGAIEACKAVVEGRVKNSLAVVRPPGHHAEPQAAGGFCLFSNVAVAAKNILKNYP 233
Query: 174 ELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPG 233
E + +I+I+DWD+HHGN TQK F++D +VL+ S+HR E G +YP G Y GEG G
Sbjct: 234 E-SVRRIMILDWDIHHGNGTQKSFYQDDQVLYVSLHRFEMGKYYPGTIQGQYDQTGEGKG 292
Query: 234 LGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTP 293
G+N N+ W G GDA+Y+ ++ +++P+ ++F PD++IIS+GFDAA GD +G C VTP
Sbjct: 293 EGFNCNITWPVGGVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFDAADGDTIGQCHVTP 352
Query: 294 YGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKP 340
Y M L A+G + + LEGGYNL +I+ S L+ VL+ + P
Sbjct: 353 SCYGHMTHMLKSLARGNLCVVLEGGYNLDAIARSALSVAKVLIGEPP 399
>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2
Length = 1113
Score = 259 bits (662), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 216/346 (62%), Gaps = 29/346 (8%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +
Sbjct: 674 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQT 733
Query: 73 VHTENHVNL--IKNISSKQFDSRR--DRIASKL-------------NSIYLNEGSSEAAY 115
VH+E H L ++ ++ DS++ I+ K+ ++++ SS A
Sbjct: 734 VHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVR 793
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
+A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L
Sbjct: 794 MAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKL 850
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
+ K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G
Sbjct: 851 SVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVG 908
Query: 236 YNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCR 290
YN+NV W G GD +YL + +++P+A++F PD++++SAGFDA G PLGG
Sbjct: 909 YNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYS 968
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
VT + + ++LM A G++VLALEGG++L +I ++ AC++ LL
Sbjct: 969 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1014
>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=2
Length = 1122
Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/346 (39%), Positives = 214/346 (61%), Gaps = 29/346 (8%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
G++YD M KH G+ HPE+ RI++IW++LQ G+ +C + ++A + +
Sbjct: 683 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLSKCERIRGRKATLDEIQT 742
Query: 73 VHTENHVNL--IKNISSKQFDSRR--DRIASKLNSIYLNEG-------------SSEAAY 115
VH+E H L ++ ++ DS++ I+ K+ ++ G SS A
Sbjct: 743 VHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVR 802
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
+A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L
Sbjct: 803 MAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKL 859
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
+ K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G
Sbjct: 860 NVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVG 917
Query: 236 YNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCR 290
YN+NV W G GD +YL + +++P+A +F PD++++SAGFDA G PLGG
Sbjct: 918 YNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYS 977
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
VT + + ++LM A G++VLALEGG++L +I ++ AC++ LL
Sbjct: 978 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1023
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 212/362 (58%), Gaps = 6/362 (1%)
Query: 15 VGLLYDERMCKHNT--PDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
L+Y E M D + E P R+ A ++L+ G+ QRC+ L+A+EA ++ L
Sbjct: 3 TALVYHEDMTATRLLWDDPECEIERPERLTAALDRLRQRGLEQRCLRLSAREASEEELGL 62
Query: 73 VHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGE 132
VH+ +V+L++ + ++ + ++IY + + A LAAG+ +++ + V G
Sbjct: 63 VHSPEYVSLVRE-TQVLGKEELQALSGQFDAIYFHPSTFHCARLAAGAGLQLVDAVLTGA 121
Query: 133 LNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNS 192
+ + A+VRPPGHH + A GFC++NNVA+AA+ + + + G+++IL+VDWDVHHG
Sbjct: 122 VQNGLALVRPPGHHGQRAAANGFCVFNNVAIAAA---HAKQKHGLHRILVVDWDVHHGQG 178
Query: 193 TQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252
Q +F DP VL+FS HR+E G F+P + +G G GLG+ +N+PW G+ADY
Sbjct: 179 IQYLFEDDPSVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADY 238
Query: 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIV 312
+A + H+LLP+A +F P+++++SAGFD+A GDP G + TP ++ + + L A G++
Sbjct: 239 VAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRVC 298
Query: 313 LALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLA 372
LEGGY+L S++ SV + LL D S P +S IQ+ R + W +L
Sbjct: 299 AVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMAPCQSALESIQSARAAQAPHWKSLQ 358
Query: 373 DE 374
+
Sbjct: 359 QQ 360
>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1
Length = 1122
Score = 255 bits (651), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 213/346 (61%), Gaps = 29/346 (8%)
Query: 15 VGLLYDERMCKHNTPDGD--YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
G++YD M KH G+ HPE+ RI++ W++LQ G+ +C + ++A + +
Sbjct: 683 TGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSTWSRLQETGLLSKCERIRGRKATLDEIQT 742
Query: 73 VHTENHVNL--IKNISSKQFDSRR--DRIASKLNSIYLNEG-------------SSEAAY 115
VH+E H L ++ ++ DS++ I+ K+ ++ G SS A
Sbjct: 743 VHSEYHTLLYGTSPLNRQKVDSKKLLGPISQKMYAVLPCGGIGVDSDTVWNEMHSSSAVR 802
Query: 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPEL 175
+A G ++E+A +VA GEL + FAI+RPPGHHAE AMGFC +N+VA+ A L + +L
Sbjct: 803 MAVGCLLELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLL---QQKL 859
Query: 176 GINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235
+ K+LIVDWD+HHGN TQ+ F+ DP VL+ S+HR++ G F+P + G +G GPG+G
Sbjct: 860 NVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGS--GAPEEVGGGPGVG 917
Query: 236 YNINVPWENG---RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAG--DPLGGCR 290
YN+NV W G GD +YL + +++P+A +F PD++++SAGFDA G PLGG
Sbjct: 918 YNVNVAWIGGVDPPIGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYS 977
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
VT + + ++LM A G++VLALEGG++L +I ++ AC++ LL
Sbjct: 978 VTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALL 1023
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 255 bits (651), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 223/394 (56%), Gaps = 19/394 (4%)
Query: 15 VGLLYDERMCKHNT--PDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
L+Y E M D + E P R+ A + L+ G+ +RC+ L+A EA ++ L
Sbjct: 3 TALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEERCLCLSACEASEEELGL 62
Query: 73 VHTENHVNLIKNISSKQFDSRRDRIASK-LNSIYLNEGSSEAAYLAAGSVIEVAERVAEG 131
VH+ ++ L++ ++ D SK N++Y + + A LAAG+ +++ + V G
Sbjct: 63 VHSPEYIALVQK--TQTLDKEELHALSKQYNAVYFHPDTFHCARLAAGAALQLVDAVLTG 120
Query: 132 ELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGN 191
+++ A+VRPPGHH++ A GFC++NNVA+AA + + + G+ +ILIVDWDVHHG
Sbjct: 121 AVHNGLALVRPPGHHSQRAAANGFCVFNNVALAAK---HAKQKYGLQRILIVDWDVHHGQ 177
Query: 192 STQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDAD 251
Q +F DP VL+FS HR+E G+F+P + +G+G G G+ +N+PW G+AD
Sbjct: 178 GIQYIFNDDPSVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGFTVNLPWNQVGMGNAD 237
Query: 252 YLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKI 311
YLA + H+LLP+A +F P+++++SAGFD+A GDP G + TP ++ + + L A G+I
Sbjct: 238 YLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRI 297
Query: 312 VLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTL 371
LEGGY+L S++ SV + LL D P +S IQ+V+ + +W
Sbjct: 298 CAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSALESIQSVQTAQTPYW--- 354
Query: 372 ADELPTKLTSLKAPPAHMISSSDSEDEDTKVETL 405
TSL+ A ++SSS E+ + L
Sbjct: 355 --------TSLQQNVAPVLSSSTHSPEERSLRLL 380
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/383 (38%), Positives = 211/383 (55%), Gaps = 15/383 (3%)
Query: 7 EGRTIKRRVG---LLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVL-NA 62
E R R G + +++ +H HPE+ +RI I L I ++C VL N
Sbjct: 4 EDRQKNRSTGPTLIGFNQTQNEHENTVCPTHPESSDRILKIKEALTKTKILEKCTVLTNF 63
Query: 63 KEAKDKNLLSVHTENHVNLIKNISSKQFDSRRD--RIASKLNSIYLNEGSSEAAYLAAGS 120
E D +L H ++ ++K++ + ++ D K +S+++ E S + A
Sbjct: 64 LEIDDADLEVTHDKS---MVKDLMESEKKTQEDINSQCEKYDSVFMTENSMKVAKDGVAC 120
Query: 121 VIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKI 180
V ++ R+ E ++ FA+VRPPGHHA+ GFCL+NNVA AA E G +I
Sbjct: 121 VRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQAAE----EAFFSGAERI 176
Query: 181 LIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINV 240
LIVD DVHHG+ TQ++F+ D RVL+FS+HRHE G F+P + + IG G GLGYN N+
Sbjct: 177 LIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLFWPHLPESDFDHIGSGKGLGYNANL 236
Query: 241 PWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVML 300
C D+DYL++ H+LLP+A F P +IISAGFDA GDPLGG +TP GYS +L
Sbjct: 237 ALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISAGFDALLGDPLGGMCLTPDGYSHIL 296
Query: 301 KKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAV 360
L AQG++++ LEGGYN + +V C+ VLL P + P EST ++
Sbjct: 297 YHLKSLAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEAPKESTVDSCVSL 356
Query: 361 RKKLSAFWPTLADELPTKLTSLK 383
L W D P++ TSL+
Sbjct: 357 VSVLRHHWNCF-DYFPSR-TSLR 377
Score = 249 bits (636), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 208/356 (58%), Gaps = 23/356 (6%)
Query: 32 DYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKE-AKDKNLLSVHTENHVNLIKNISSKQF 90
D HPE P R + I L+ +G+ ++CV N + A ++ + VHT+ + ++ + +
Sbjct: 444 DNHPEKPARTRRILKTLRESGVLEKCVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKD 503
Query: 91 DSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE---GELNSAFAIVRPPGHHA 147
+ + + NSIYL + + A A G+V++ + + E G+ N A IVRPPGHHA
Sbjct: 504 EELMEEAEKEFNSIYLTRDTLKVARKAVGAVLQSVDEIFEKDAGQRN-ALVIVRPPGHHA 562
Query: 148 EPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFS 207
++ GFC++NNVAVAA + ++LI+DWDVHHGN TQ++F++D V++ S
Sbjct: 563 SASKSSGFCIFNNVAVAAKYAQRRHKA---KRVLILDWDVHHGNGTQEIFYEDSNVMYMS 619
Query: 208 VHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDF 267
+HRH+ G FYP + Y+ +GEG G G ++NVP+ + GD +Y + +++P+A F
Sbjct: 620 IHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIMPIAYQF 679
Query: 268 GPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327
PD+++ISAGFDAA DPLG +VTP +++M +L A G+I+ LEGGYNL SISNS
Sbjct: 680 NPDLVLISAGFDAAVDDPLGEYKVTPETFALMTYQLSSLAGGRIITVLEGGYNLTSISNS 739
Query: 328 VLACMNVL--------LEDKPVAGSSEAYPFES----TWRVIQAVRKKLSAFWPTL 371
A VL L ++ +++ ES T R + AV++K +W L
Sbjct: 740 AQAVCEVLQNRSMLRRLREEKEQFATKPQKIESSCIKTIREVCAVQQK---YWSIL 792
>sp|Q569C4|HDA10_RAT Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1
Length = 588
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 179/305 (58%), Gaps = 8/305 (2%)
Query: 15 VGLLYDERMCKHNT--PDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
L+Y E M D + E P R+ A + L+ G+ +RC L+ EA ++ L
Sbjct: 3 TALVYHEDMTATRLLWDDPECEIECPERLTAALDGLRQRGLEERCQCLSVCEASEEELGL 62
Query: 73 VHTENHVNLIKNISSKQFDSRRDRIASK-LNSIYLNEGSSEAAYLAAGSVIEVAERVAEG 131
VH+ ++ L++ ++ D SK +++Y + + A LAAG+ + + + V G
Sbjct: 63 VHSPEYIALVQK--TQTLDKEELHTLSKQYDAVYFHPDTFHCARLAAGAALRLVDAVLTG 120
Query: 132 ELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGN 191
+++ A+VRPPGHH++ A GFC++NNVA+AA + + + G+ +ILIVDWDVHHG
Sbjct: 121 AVHNGVALVRPPGHHSQRAAANGFCVFNNVAIAAR---HAKQKYGLQRILIVDWDVHHGQ 177
Query: 192 STQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDAD 251
Q +F DP VL+FS HR+E G F+P + +G G G G+ +N+PW G+AD
Sbjct: 178 GIQYIFEDDPSVLYFSWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLPWNQVGMGNAD 237
Query: 252 YLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKI 311
YLA + H+LLP+A +F P+++++SAGFD+A GDP G + TP ++ + + L A G+I
Sbjct: 238 YLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRI 297
Query: 312 VLALE 316
LE
Sbjct: 298 CAVLE 302
>sp|Q70I53|HDAH_ALCSD Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain
DSM 11172) GN=hdaH PE=1 SV=3
Length = 369
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 164/293 (55%), Gaps = 19/293 (6%)
Query: 33 YHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISS-KQFD 91
+H +P+ + + A+G + + A A D ++L H+ H+ +K +S+
Sbjct: 35 HHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGG 94
Query: 92 SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDE 151
D I + G E A L+AG +E+ RVA GEL++ +A+V PPGHHA +
Sbjct: 95 DTGDGIT------MMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNA 148
Query: 152 AMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRH 211
AMGFC++NN +VAA + R LG+ ++ I+DWDVHHGN TQ ++W DP VL S+H+H
Sbjct: 149 AMGFCIFNNTSVAAGY---ARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH 205
Query: 212 EFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDI 271
F P D G+ T G G G GYNINVP G G+A YL D ++L + + P +
Sbjct: 206 L--CFPP--DSGYSTERGAGNGHGYNINVPLPPG-SGNAAYLHAMDQVVLHALRAYRPQL 260
Query: 272 IIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA----QGKIVLALEGGYN 320
II+ +GFDA+ DPL VT G+ M ++ +D A G+IV EGGY+
Sbjct: 261 IIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYS 313
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 125/373 (33%), Positives = 190/373 (50%), Gaps = 39/373 (10%)
Query: 15 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGI--PQRCVVLNAKEAKDKNLLS 72
G+++ E KH HPE R+ ++L+ GI +R V+L +A +++L
Sbjct: 3 TGIVFHEEYLKHE--QSPTHPERRERLAYTMDQLREEGIFESERIVLLEPFKASLEDVLE 60
Query: 73 VHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGE 132
VHTE +V + + +S++ I +I + G + A LAAG I A+ V E
Sbjct: 61 VHTEEYVRFL------EMESKKGGIIDFDTNIPV--GVFDRALLAAGGAIRAAQAVLNKE 112
Query: 133 LNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNS 192
+AFA++RPPGHHA+P GFC NN+A+ +LL + G +I I+DWD HHG+
Sbjct: 113 CENAFAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLLKQ----GFERIAILDWDAHHGDG 168
Query: 193 TQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252
TQ++F+ D RVLF S H+ YP G+ G G G GY +N+P G GD Y
Sbjct: 169 TQEIFYNDDRVLFISTHQM---PLYPGT--GYPEECGTGKGEGYTVNIPLPPG-TGDEGY 222
Query: 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---- 308
+ V D I+ PV +F P I ISAG D DP+ +T GY+ M+++ + A+
Sbjct: 223 MMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARGYAEMMRRAVAMAEKHCD 282
Query: 309 GKIVLALEGGYNL-GSISNSVLACMNVLLE-DKPVAGSSEAYPFESTWRV---------- 356
G++V LEGGY++ G++ + L + + D E Y E WR
Sbjct: 283 GRLVAVLEGGYSVEGALPYTNLGIIAAMAGFDLSAIREPENYLPELLWRKRDSALVKLKH 342
Query: 357 -IQAVRKKLSAFW 368
I+ V++ S +W
Sbjct: 343 NIEDVKRVHSKYW 355
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
Length = 423
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 177/342 (51%), Gaps = 27/342 (7%)
Query: 34 HPENPNRIKAIWNKLQAAGI------PQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISS 87
HPE R+ AI N L+ + Q + N K A +++ +VH + +V ++
Sbjct: 80 HPECSARVPAIVNALEMNELTPKFRGSQILELANFKTATVEDIANVHDKAYVFGLEKAMD 139
Query: 88 KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNS-----AFAIVRP 142
+ DS I Y + + + +AAG+ + + + V NS FA++RP
Sbjct: 140 EASDSGLIFIEGS-GPTYATSTTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRP 198
Query: 143 PGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPR 202
PGHHA P MGFC++ NVA+AA + + G+ +I I+D+DVHHGN T F +DP
Sbjct: 199 PGHHAVPKGPMGFCVFGNVAIAAR---HAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPD 255
Query: 203 VLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLP 262
+ F S H+ G+ YP G + IG+G G G +N+P G GD V++ I++P
Sbjct: 256 IFFLSTHQD--GS-YPGT--GKISDIGKGKGEGTTLNLPLPGGS-GDIAMRTVFEEIIVP 309
Query: 263 VAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ----GKIVLALEGG 318
A+ F PDII++SAG+DA DPL + T Y + K + A+ G+ V LEGG
Sbjct: 310 CAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLEGG 369
Query: 319 YNLGSISNSVLACMNVLLEDKPVAGSSE--AYPFESTWRVIQ 358
YNL S+S+SV LL + +A + AY ++ R ++
Sbjct: 370 YNLESLSSSVADSFRALLGEDSLASEFDNPAYLYDEPMRKVR 411
>sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1
Length = 377
Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 175/347 (50%), Gaps = 36/347 (10%)
Query: 11 IKRRVGLLYDERMCKHNTPDGDY--------------HPENPNRIKAIWNKLQAAGIPQR 56
+ RV + + E M +H+ +G + HPEN +R++ + + L+ I
Sbjct: 2 VTNRVDVFWHEGMLRHDAVEGVFDTGYDPGFLDVLEKHPENADRVRNMLSILRRGPIAPH 61
Query: 57 CVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYL 116
A LL HT + I+ + R IA+ +++ GS EAA L
Sbjct: 62 VNWFTGLPAIVSELLMFHTSEY---IEKLVEADKSGERCEIAA---GTFMSPGSWEAALL 115
Query: 117 AAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELG 176
AAG+ + + + + A+A+VRPPGHH++P +A G+C NN A+A LN
Sbjct: 116 AAGTTLSAMQHILDCHGKIAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSG---S 172
Query: 177 INKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHE--FGTFYPANDDGFYTMIGEGPGL 234
+++ ++D DVH+GN T + F+ +VL S+H + +G+ +P G +GE GL
Sbjct: 173 CSRVAVIDIDVHYGNGTAEGFYTSDKVLTVSLHMNHGSWGSSHP--QKGSIDELGEDVGL 230
Query: 235 GYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPY 294
GYN+NVP NG GD Y + +++P + FGPD++++ G D++A DP G +T
Sbjct: 231 GYNLNVPLPNG-TGDRGYEYAMNELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMN 289
Query: 295 GY----SVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLLE 337
GY +M + + G++++ EGGY++ C++ +LE
Sbjct: 290 GYRRIGQIMRGVAEEHSHGRLLMVQEGGYHV----TYAAYCLHAMLE 332
>sp|Q57955|Y535_METJA Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0535 PE=3 SV=1
Length = 343
Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 113/345 (32%), Positives = 172/345 (49%), Gaps = 41/345 (11%)
Query: 17 LLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTE 76
+LY+ + H YH ENP R+ I N L++ G +VL ++ +L +H+
Sbjct: 8 ILYNPEVLGHKPKS--YHVENPERVLTILNSLKSNGFDD--IVLIEGKSTINEILEIHSR 63
Query: 77 NHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSA 136
++V I N+S K F+ YL + + +AA L A + + A ++A + +
Sbjct: 64 DYVYSIINLS-KSFNYYD-------GDTYLCDRTLDAA-LTAFKLAKEAVKLALKDRDLY 114
Query: 137 FAIVRPPGHHA----EPDEAM--GFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHG 190
FA+ RPPGHHA AM GFC++NN+A AA N + K++I+D+DVHHG
Sbjct: 115 FALTRPPGHHAGISGRALGAMSNGFCIFNNIAGAARLAKNY-----MKKVIIIDFDVHHG 169
Query: 191 NSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDA 250
N TQ++FW D RV+ H+ YP D IG G IN+P+ DA
Sbjct: 170 NGTQEIFWNDNRVIHIDFHQR---GIYPGTGD--ILDIGGEEAKGTKINLPFP-AHSTDA 223
Query: 251 DYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGK 310
DY+ W+ I+ P+ F PD +++SAGFDA D L +T Y + KL ++
Sbjct: 224 DYIFAWNEIVEPILNYFSPDTVLVSAGFDAFINDGLASMDLTETFYRFVGAKLSGYS--- 280
Query: 311 IVLALEGGYNLG------SISNSVLACMNVL--LEDKPVAGSSEA 347
+ LEGGY++G + + + +VL LED V S+E
Sbjct: 281 VTAVLEGGYSIGLKYAPPAFLDGYVDAKDVLDNLEDYTVINSNEV 325
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 158/307 (51%), Gaps = 29/307 (9%)
Query: 34 HPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSK----- 88
H EN R +AI ++++ + R V A ++L VH+ HV ++ + +
Sbjct: 17 HVENSGRTRAILRAIESSDLSPRFV--EPGMAGIDDILMVHSSTHVEYLEVFAGRGGGWL 74
Query: 89 QFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAE 148
+D+ Y+ S A L+AG + AE ++++ RPPGHHA
Sbjct: 75 DYDT------------YMTPESFSVARLSAGGAMLAAEEALRD--GWSYSLGRPPGHHAT 120
Query: 149 PDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSV 208
D +MGFC++NN+A+A + + R LG+++ L++D+DVHHGN T +F++D V++ S+
Sbjct: 121 YDRSMGFCIFNNIAIA---IEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISI 177
Query: 209 HRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFG 268
H+ + T +P GF G G G G+N+N+P G G+ +YL + IL V + F
Sbjct: 178 HQ-DPRTLFPGT--GFIDETGSGEGEGFNLNIPMPRG-SGNREYLWILGMILPAVLEGFR 233
Query: 269 PDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSV 328
PD+I +SAGFDA DPL V +S + + LEGGY+ ++ S
Sbjct: 234 PDMIFVSAGFDAHRRDPLAEIMVDEEFFS-WIGWFIHQTGLPCTAVLEGGYDPEALGRSN 292
Query: 329 LACMNVL 335
+A M L
Sbjct: 293 IAFMRGL 299
>sp|P72702|Y245_SYNY3 Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0245 PE=3 SV=1
Length = 304
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 103/331 (31%), Positives = 166/331 (50%), Gaps = 38/331 (11%)
Query: 15 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAK-----DKN 69
V ++Y +H T G HPE P R+ AI L+ +P + K + D
Sbjct: 2 VAIIYSAEFLRHET--GPTHPECPARLTAIATALRK--MPGANYLHWQKPSPVTWNLDPY 57
Query: 70 LLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVA 129
+L H++ ++N + ++ S ++ S + A LA + ++ + V
Sbjct: 58 ILRCHSQEYLNKLAKLAELGGGSLDADTP-------VSPQSYDVARLAVRAWLDGVDHVL 110
Query: 130 EGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHH 189
+ + F + RPPGHHA + MGFCL NNVA+AA + L RP G+ ++ I+DWDVHH
Sbjct: 111 N-QREAVFVLARPPGHHAIRNTGMGFCLLNNVAIAAHYALT-RP--GVERVAILDWDVHH 166
Query: 190 GNSTQKMFWKDPRVLFFSVHRHEFGTFYP----ANDDGFYTMIGEGPGLGYNINVPWENG 245
GN T+ + +PR+ + S+H+ YP A D G + + +N+P + G
Sbjct: 167 GNGTEALVDHNPRIFYCSLHQFP---CYPGTGAAGDRGQHDNV---------LNIPLKPG 214
Query: 246 RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMD 305
G Y ++H +LP + PD++++SAG+DA DPL + P Y +M LM+
Sbjct: 215 GDGKV-YREAFEHKVLPFLRQVKPDLLLVSAGYDANHSDPLAYMNLIPEDYGMMTHYLME 273
Query: 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLL 336
+ VL LEGGY+L S++ SV+ + LL
Sbjct: 274 ISPYP-VLGLEGGYHLPSLAKSVVETLKPLL 303
>sp|Q54VQ7|HDA22_DICDI Type-2 histone deacetylase 2 OS=Dictyostelium discoideum GN=hdaC PE=2
SV=1
Length = 1704
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 167/364 (45%), Gaps = 56/364 (15%)
Query: 18 LYDERMCKHNTPDGDYHPENPNRIK-AIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTE 76
+Y + +H P+ +H E P+RI+ A+ + A P + N E + +++VH
Sbjct: 1066 IYHKICMQHKVPN--FHLEKPDRIQVAVSCINEFASNPLVDIFDNPPEVDMRYVMAVHDA 1123
Query: 77 NHVN------------------------LIKNISSKQFDSRRDRIASKLNSIYLNEGSSE 112
N++ ++ S K F+ D I +++ S +
Sbjct: 1124 NYIKKLETSLPPENSEFETHLESDKSGAMVTVASHKDFEGDDDNIYD----TFVSHRSIK 1179
Query: 113 AAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHA------EPDEAMGFCLYNNVAVAAS 166
AA A+GSV + V+ AF +RPPGHHA + G+CL NNVA+ A
Sbjct: 1180 AALRASGSVCAAVDSVSRSGYTRAFCAIRPPGHHAGRYGRTSDAPSQGYCLINNVAIGAK 1239
Query: 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHR-HEFGTFYP--ANDDG 223
+ G ++I +VD+DVHHGN TQ++ D LF S+H E FYP D G
Sbjct: 1240 YA---SLTAGYSRIAVVDFDVHHGNGTQEILSGDDNFLFISIHVCDEKRYFYPGTGQDVG 1296
Query: 224 FYTMI-GEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAA 282
+ G+ G NI + G A +L W + ++P + + P +I +SAGFD
Sbjct: 1297 DIDEVSGQFDGNILNIGLKR---NTGSAVFLQQWMNKIIPRLEAYKPQLIFLSAGFDGHK 1353
Query: 283 GDPLGGCRVTPYGYSVMLKKL----MDFAQGKIVLALEGGYNLGSISNSVLACMN----V 334
DP G ++ Y V+ K + + +G+I+ LEGGY + +NS+ C+N
Sbjct: 1354 DDPTNGLKLNEEDYFVITKMIKTVAFKYCKGRIISVLEGGYGIEK-TNSLQRCVNSHLKA 1412
Query: 335 LLED 338
L+ED
Sbjct: 1413 LIED 1416
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 22/350 (6%)
Query: 14 RVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSV 73
+ +Y +++ ++ D HP N R+K L A + ++ + A D L+ +
Sbjct: 7 KTAYVYSDKLLQYRFHDQ--HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLI 64
Query: 74 HTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE 130
H ++V IK+ S + ++++ + + NS + + A G + +A+ +
Sbjct: 65 HKYDYVEAIKHASHGIISEDEAKKYGLNDEENSQFKHMHRHSAT--IVGGALTLADLIMS 122
Query: 131 GELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHG 190
G++ + + HHA+P A GFC+YN++A+ A +L E + ++LI+D D HHG
Sbjct: 123 GKVLNGCHL-GGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHG 177
Query: 191 NSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGD 249
+ TQ F+ D V +S+ HE G F +P + G YT GE G G+ +NVP E D
Sbjct: 178 DGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTED 232
Query: 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT---PYGYSVMLKKLMD- 305
A +L + + PV K F PDII+ G D DPL T Y +K L D
Sbjct: 233 ASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADS 292
Query: 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
+ GK+++ GGYN+ + + + + L D+P+ + + W+
Sbjct: 293 YTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWK 342
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 22/350 (6%)
Query: 14 RVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSV 73
+ +Y +++ ++ D HP N R+K L A + ++ + A D L+ +
Sbjct: 7 KTAYVYSDKLLQYRFHDQ--HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLI 64
Query: 74 HTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE 130
H ++V IK+ S + ++++ + + NS + + A G + +A+ +
Sbjct: 65 HKYDYVEAIKHASHGIISEDEAKKYGLNDEENSQFKHMHRHSAT--IVGGALTLADLIMS 122
Query: 131 GELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHG 190
G++ + + HHA+P A GFC+YN++A+ A +L E + ++LI+D D HHG
Sbjct: 123 GKVLNGCHL-GGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHG 177
Query: 191 NSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGD 249
+ TQ F+ D V +S+ HE G F +P + G YT GE G G+ +NVP E D
Sbjct: 178 DGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTED 232
Query: 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT---PYGYSVMLKKLMD- 305
A +L + + PV K F PDII+ G D DPL T Y +K L D
Sbjct: 233 ASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADS 292
Query: 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
+ GK+++ GGYN+ + + + + L D+P+ + + W+
Sbjct: 293 YTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWK 342
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 167/350 (47%), Gaps = 22/350 (6%)
Query: 14 RVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSV 73
+ +Y +++ ++ D HP N R+K L A + ++ + A D L+ +
Sbjct: 7 KTAYVYSDKLLQYRFHDQ--HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLI 64
Query: 74 HTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE 130
H ++V IK+ S + ++++ + + N + + A G + +A+ +
Sbjct: 65 HKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSAT--IVGGALTLADLIMS 122
Query: 131 GELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHG 190
G++ + + HHA+P A GFC+YN++A+ A +L E + ++LI+D D HHG
Sbjct: 123 GKVLNGCHL-GGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTDAHHG 177
Query: 191 NSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGD 249
+ TQ F+ D V +S+ HE G F +P + G YT GE G G+ +NVP E D
Sbjct: 178 DGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTED 232
Query: 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT---PYGYSVMLKKLMD- 305
A +L + + PV K F PDII+ G D DPL T Y +K L D
Sbjct: 233 ASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADS 292
Query: 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
+ GK+++ GGYN+ + + + + L D+P+ + + W+
Sbjct: 293 YTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWK 342
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/354 (28%), Positives = 168/354 (47%), Gaps = 30/354 (8%)
Query: 14 RVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSV 73
+ +Y +++ ++ D HP N R+K L A + ++ + A D L+ +
Sbjct: 7 KTAYVYSDKLLQYRFHDQ--HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATDDELMLI 64
Query: 74 HTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGSSEAAYL------AAGSVIEVAER 127
H ++V IK+ +S S + + LN +E + + ++ G + +A+
Sbjct: 65 HKYDYVEAIKH-ASHGIISEDEAMKYGLN----DEENGQFKHMHRHSATIVGGALTLADL 119
Query: 128 VAEGE-LNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWD 186
+ G+ LN + HHA+P A GFC+YN++A+ A +L E + ++LI+D D
Sbjct: 120 IMSGKALNGCH--LGGGLHHAQPGRASGFCIYNDIAITAQYLAKEYNQ----RVLIIDTD 173
Query: 187 VHHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENG 245
HHG+ TQ F+ D V +S+ HE G F +P + G YT GE G G+ +NVP E
Sbjct: 174 AHHGDGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-P 228
Query: 246 RCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT---PYGYSVMLKK 302
D+ +L + + PV K F PDII+ G D DPL T Y +K
Sbjct: 229 YTEDSSFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKY 288
Query: 303 LMD-FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
L D + GKI++ GGYN+ + + + + L D+P+ + + W+
Sbjct: 289 LADTYTNGKIIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWK 342
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 166/350 (47%), Gaps = 22/350 (6%)
Query: 14 RVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSV 73
+ +Y +++ ++ D HP N R+K L A + ++ + A L+ +
Sbjct: 7 KTAYVYSDKLLQYRFHDQ--HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLI 64
Query: 74 HTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE 130
H ++V IK+ S + ++++ + + N + + A G + +A+ +
Sbjct: 65 HKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSAT--IVGGALTLADLIMS 122
Query: 131 GELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHG 190
G++ + + HHA+P A GFC+YN++A+ A ++ E + ++LI+D D HHG
Sbjct: 123 GKVLNGCHL-GGGLHHAQPGRASGFCIYNDIAITAQYIAKEYNQ----RVLIIDTDAHHG 177
Query: 191 NSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGD 249
+ TQ F+ D V +S+ HE G F +P + G YT GE G G+ +NVP E D
Sbjct: 178 DGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTED 232
Query: 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT---PYGYSVMLKKLMD- 305
A +L + + PV K F PDII+ G D DPL T Y +K L D
Sbjct: 233 ASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADS 292
Query: 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
+ GK+++ GGYN+ + + + + L D+P+ + + W+
Sbjct: 293 YTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWK 342
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 166/350 (47%), Gaps = 22/350 (6%)
Query: 14 RVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSV 73
+ +Y +++ ++ D HP N R+K L A + ++ + A L+ +
Sbjct: 7 KTAYVYSDKLLQYRFHDQ--HPFNQMRLKLTTELLLNANLLSPEQIVQPRIATGDELMLI 64
Query: 74 HTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAE 130
H ++V IK+ S + ++++ + + N + + A G + +A+ +
Sbjct: 65 HKYDYVEAIKHASHGIISEDEAKKYGLNDEENGQFKHMHRHSAT--IVGGALTLADLIMS 122
Query: 131 GELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHG 190
G++ + + HHA+P A GFC+YN++A+ A ++ E + ++LI+D D HHG
Sbjct: 123 GKVLNGCHL-GGGLHHAQPGRASGFCIYNDIAITAQYIAKEYNQ----RVLIIDTDAHHG 177
Query: 191 NSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGRCGD 249
+ TQ F+ D V +S+ HE G F +P + G YT GE G G+ +NVP E D
Sbjct: 178 DGTQWSFYADNHVTTYSI--HETGKFLFPGS--GHYTERGEDIGYGHTVNVPLE-PYTED 232
Query: 250 ADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT---PYGYSVMLKKLMD- 305
A +L + + PV K F PDII+ G D DPL T Y +K L D
Sbjct: 233 ASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLADS 292
Query: 306 FAQGKIVLALEGGYNLGSISNSVLACMNVLLEDKPVAGSSEAYPFESTWR 355
+ GK+++ GGYN+ + + + + L D+P+ + + W+
Sbjct: 293 YTNGKVIMFGGGGYNIWRVVPRAWSHVFLSLIDQPIQSGYLPLEWINKWK 342
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 173/347 (49%), Gaps = 31/347 (8%)
Query: 11 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNL 70
+++ G +Y + ++ + HP N R+K L G ++ +++ + A D L
Sbjct: 4 MQQTTGYVYANELLQYRFSNK--HPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDEL 61
Query: 71 LSVHTENHVNLIKNISS---KQFDSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAER 127
+H +++ I++ S + ++++ + + +++ +A + G+ + +A++
Sbjct: 62 SLIHAYDYIQAIRHASHGILSENEAKKYGLDGE-DTLQFRMMHKHSARIVGGA-LNLADQ 119
Query: 128 VAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDV 187
+ G L + + HH+ P A GFC+YN+VA+ S+L+ + + ++L +D D
Sbjct: 120 IMSGTLTNGCHL-GGGLHHSLPGRANGFCIYNDVAITISYLMQKYNQ----RVLCIDTDA 174
Query: 188 HHGNSTQKMFWKDPRVLFFSVHRHEFGTF-YPANDDGFYTMIGEGPGLGYNINVPWENGR 246
HHG+ TQ F+ + + L +S+ HE G F +P + G YT G G GY +N+P E
Sbjct: 175 HHGDGTQWSFYTNDQALIYSI--HETGKFLFPGS--GHYTERGAEKGFGYTVNIPLEP-Y 229
Query: 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLG--GCRV-TPYGYSVMLKKL 303
D +L V+ + PV F PDII+ G D DPL C + T Y ++K L
Sbjct: 230 TEDQSFLDVFKQTIEPVVASFKPDIIVSVHGVDVHYLDPLTHMSCTLNTLYEIPYIVKSL 289
Query: 304 MD-FAQGKIVLALEGGYNLGSI-----SNSVLACMNVLLEDKPVAGS 344
D + QGK+++ GGYN+ + S+ LA L+ ++P GS
Sbjct: 290 ADTYTQGKVIMFGGGGYNIWKVVPRAWSHVFLA----LIGEQPPTGS 332
>sp|P32561|RPD3_YEAST Histone deacetylase RPD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPD3 PE=1 SV=1
Length = 433
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 158/321 (49%), Gaps = 22/321 (6%)
Query: 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLL 71
KRRV YD + + G HP P+RI+ + + G+ ++ + AK A + +
Sbjct: 18 KRRVAYFYDADVGNYAYGAG--HPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATKQEMC 75
Query: 72 SVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERV 128
HT+ +++ + ++ + + R + K N + +G E ++ G +E A R+
Sbjct: 76 QFHTDEYIDFLSRVTPDNLEMFK-RESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARL 134
Query: 129 AEGELNSAFAIVRPPG--HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWD 186
G+ + A V G HHA+ EA GFC N++ + LL P ++L +D D
Sbjct: 135 NRGKCDVA---VNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHP-----RVLYIDID 186
Query: 187 VHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246
VHHG+ ++ F+ RV+ S H+ +G F+P G IG G G Y +NVP +G
Sbjct: 187 VHHGDGVEEAFYTTDRVMTCSFHK--YGEFFPGT--GELRDIGVGAGKNYAVNVPLRDG- 241
Query: 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDF 306
DA Y +V++ ++ + + + P +++ G D+ +GD LG ++ G++ + + F
Sbjct: 242 IDDATYRSVFEPVIKKIMEWYQPSAVVLQCGGDSLSGDRLGCFNLSMEGHANCVNYVKSF 301
Query: 307 AQGKIVLALEGGYNLGSISNS 327
+V+ GGY + +++ +
Sbjct: 302 GIPMMVVG-GGGYTMRNVART 321
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 160/326 (49%), Gaps = 25/326 (7%)
Query: 9 RTIKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDK 68
R K+RV DE++ ++ GD HP P+RI + + G+ + V + + A
Sbjct: 22 RPQKKRVTYHLDEQVGNYHY--GDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATFG 79
Query: 69 NLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAAYLAAGSVI 122
+ H E++++ +K ++ ++ A K + + G+ E + +AG+ +
Sbjct: 80 EMSEFHREDYLDFLKRVTP----DNAEQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASL 135
Query: 123 EVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKIL 181
+ + ++ +G+ + AI G HHA+ EA GFC N++ +A +L P ++L
Sbjct: 136 DASRKLVQGQTD--IAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFP-----RVL 188
Query: 182 IVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVP 241
+D D+HHG+ Q+ F++ RVL S H++ G F+PA G + G G + +NVP
Sbjct: 189 YIDIDIHHGDGVQQAFYESDRVLTVSFHKYN-GDFFPAT--GNFDENGVKGGKYFALNVP 245
Query: 242 WENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLK 301
E+G GD Y +++ I+ P F P I++ G D+ D LG ++ + + ++
Sbjct: 246 LEDG-IGDEQYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRLGVFNLSIHAHGECVR 304
Query: 302 KLMDFAQGKIVLALEGGYNLGSISNS 327
F +V+ GGY L +++ +
Sbjct: 305 FTRSFNIPMLVVG-GGGYTLRNVARA 329
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 14/286 (4%)
Query: 38 PNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRI 97
P R + + ++A G+ + V+ K A + + + HT++++ + +S + + + +
Sbjct: 27 PRRASMVHSLIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETL 86
Query: 98 ASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGF 155
L + EG + A G+ + AE++ G+ + AI P G HHA+ DEA GF
Sbjct: 87 EYGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGK--TRIAINWPGGWHHAKKDEASGF 144
Query: 156 CLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGT 215
C Y N AV L E+ +++L VD D+HHG+ + F +V+ S+H+ G
Sbjct: 145 C-YLNDAVLGILKLREK----FDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPG- 198
Query: 216 FYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIIS 275
F+P D + IG G G Y++NVP ++G D Y + + +L V F P+ +++
Sbjct: 199 FFPGTGD--VSDIGLGKGRYYSVNVPLQDG-IQDEKYYQICEGVLKEVFTTFNPEAVVLQ 255
Query: 276 AGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNL 321
G D AGDP+ +TP G LK ++ + ++L GGY+L
Sbjct: 256 LGADTIAGDPMCSFNMTPQGIGKCLKYVLQWQLPTLILG-GGGYHL 300
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 155/318 (48%), Gaps = 20/318 (6%)
Query: 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLL 71
K++V YDE + ++ G HP P+R++ + N + + ++ V+ A ++
Sbjct: 5 KKKVSYFYDEDVGNYHY--GPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMT 62
Query: 72 SVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERV 128
HT+ ++ + ++ + + K N + +G E ++AG I A+ +
Sbjct: 63 RCHTDEYIEFLWRVTPDTMEKFQPH-QLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQEL 121
Query: 129 AEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDV 187
G N+ AI G HHA+ EA GFC N++A+AA LL ++L +D DV
Sbjct: 122 NSG--NAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYH-----QRVLYIDIDV 174
Query: 188 HHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRC 247
HHG+ ++ F+ RV+ S H+ FG ++P G G G G Y +NVP +G
Sbjct: 175 HHGDGVEEFFYTTDRVMTCSFHK--FGEYFPGT--GHIKDTGIGTGKNYAVNVPLRDG-I 229
Query: 248 GDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA 307
D Y +V+ ++ + + F P+ +I+ G D+ AGD LG ++ G+S+ + + F
Sbjct: 230 DDESYESVFKPVISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMKGHSMCVDFVKSFN 289
Query: 308 QGKIVLALEGGYNLGSIS 325
I + GGY + +++
Sbjct: 290 LPMICVG-GGGYTVRNVA 306
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 152/306 (49%), Gaps = 31/306 (10%)
Query: 11 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNL 70
+KR+V YD + + G HP P+RI+ L G+ Q VL A+D++L
Sbjct: 15 VKRKVCYFYDPEVGNYYYGQG--HPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDL 72
Query: 71 LSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNEGS-------SEAAYLAAGSV-- 121
H +++V+ +++I+ ++++D+I +L + E S A GSV
Sbjct: 73 CRFHADDYVSFLRSITP---ETQQDQI-RQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGG 128
Query: 122 -IEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKI 180
+++ + + +N A + HHA+ EA GFC N++ +A LL + ++
Sbjct: 129 SVKLNHGLCDIAINWAGGL-----HHAKKCEASGFCYVNDIVLAILELLKQH-----ERV 178
Query: 181 LIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINV 240
L VD D+HHG+ ++ F+ RV+ S H+ FG ++P G IG G G Y++NV
Sbjct: 179 LYVDIDIHHGDGVEEAFYATDRVMTVSFHK--FGDYFPGT--GHIQDIGYGSGKYYSLNV 234
Query: 241 PWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVML 300
P ++G D Y ++ I+ V + F P +++ G D+ +GD LG ++ G++ +
Sbjct: 235 PLDDG-IDDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECV 293
Query: 301 KKLMDF 306
K + F
Sbjct: 294 KFMRSF 299
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 14/301 (4%)
Query: 38 PNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRI 97
P R + + ++A + ++ ++ K A + + + HT+ ++ ++ +S + D D I
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 98 ASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGF 155
L EG + A G+ I A+ + +G AI G HHA+ DEA GF
Sbjct: 95 EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCK--VAINWSGGWHHAKKDEASGF 152
Query: 156 CLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGT 215
C Y N AV L + E +IL VD D+HHG+ + F +V+ S+H+ G
Sbjct: 153 C-YLNDAVLGILRLRRKFE----RILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG- 206
Query: 216 FYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIIS 275
F+P D + +G G G Y++NVP ++G D Y + + +L V + F P +++
Sbjct: 207 FFPGTGD--VSDVGLGKGRYYSVNVPIQDG-IQDEKYYQICESVLKEVYQAFNPKAVVLQ 263
Query: 276 AGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVL 335
G D AGDP+ +TP G LK ++ + ++L GGYNL + + V+
Sbjct: 264 LGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILG-GGGYNLANTARCWTYLTGVI 322
Query: 336 L 336
L
Sbjct: 323 L 323
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 14/301 (4%)
Query: 38 PNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRI 97
P R + + ++A + ++ ++ K A + + + HT+ ++ ++ +S + + D I
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSI 94
Query: 98 ASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGF 155
L EG + A G I A+ + +G+ AI G HHA+ DEA GF
Sbjct: 95 EYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCK--VAINWSGGWHHAKKDEASGF 152
Query: 156 CLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGT 215
C Y N AV L + ++IL VD D+HHG+ + F +V+ S+H+ G
Sbjct: 153 C-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG- 206
Query: 216 FYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIIS 275
F+P D + +G G G Y++NVP ++G D Y + + +L V + F P +++
Sbjct: 207 FFPGTGD--MSDVGLGKGRYYSVNVPIQDG-IQDEKYYHICESVLKEVYQAFNPKAVVLQ 263
Query: 276 AGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVL 335
G D AGDP+ +TP G LK ++ + ++L GGYNL + + V+
Sbjct: 264 LGADTIAGDPMCSFNMTPVGIGKCLKYVLQWQLATLILG-GGGYNLANTARCWTYLTGVI 322
Query: 336 L 336
L
Sbjct: 323 L 323
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 144/301 (47%), Gaps = 14/301 (4%)
Query: 38 PNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRI 97
P R + + ++A + ++ ++ K A + + + HT+ ++ ++ +S + + D I
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSI 94
Query: 98 ASKLN-SIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGF 155
L EG + A G I A+ + +G+ AI G HHA+ DEA GF
Sbjct: 95 EYGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCK--VAINWSGGWHHAKKDEASGF 152
Query: 156 CLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGT 215
C Y N AV L + ++IL VD D+HHG+ + F +V+ S+H+ G
Sbjct: 153 C-YLNDAVLGILRLRRK----FDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG- 206
Query: 216 FYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIIS 275
F+P D + +G G G Y++NVP ++G D Y + + +L V + F P +++
Sbjct: 207 FFPGTGD--MSDVGLGKGRYYSVNVPIQDG-IQDEKYYHICESVLKEVYQAFNPKAVVLQ 263
Query: 276 AGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVL 335
G D AGDP+ +TP G LK ++ + ++L GGYNL + + V+
Sbjct: 264 LGADTIAGDPMCSFNMTPVGIGKCLKYVLQWQLATLILG-GGGYNLANTARCWTYLTGVI 322
Query: 336 L 336
L
Sbjct: 323 L 323
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 161/335 (48%), Gaps = 32/335 (9%)
Query: 1 MEVKSGEGRTIKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVL 60
ME + T K RV +D+ + N G YHP P+R+ N + G+ ++ +
Sbjct: 1 MEYNTILNNTSKTRVCYFFDQDV--GNYFYGPYHPMKPHRLCLTNNLVLNYGLHKKMHLY 58
Query: 61 NAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRDRIASKLNSIYLNE------GSSEAA 114
A+ A +++L H+E++V+ ++ ++ + + +D + ++ E G +
Sbjct: 59 KARPADAEDMLKFHSEDYVDFLERVTPENINEWKD-----VKRFHIGEDCPVFPGLYDYC 113
Query: 115 YLAAGSVIEVA----ERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLN 170
+ +G IE A R+ + +N + + HHA DEA GFC N++ +A LL
Sbjct: 114 SIYSGGSIEGALKLNHRMYDIAINWSGGL-----HHARKDEASGFCYVNDIVLAILELLK 168
Query: 171 ERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGE 230
++L +D DVHHG+ Q+ F+ RV+ S H+ G F+P D IG
Sbjct: 169 FHA-----RVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFG-GDFFPGTGD--IDEIGA 220
Query: 231 GPGLGYNINVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCR 290
G Y++NVP +G D +YL ++ ++ V + P +I++ G D+ D LG
Sbjct: 221 KTGKLYSVNVPLADG-IDDKNYLNIFKPVIQGVMDYYRPSVIVLQCGADSLRFDRLGCFN 279
Query: 291 VTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSIS 325
+T G++ ++ + F +VL GGY + +++
Sbjct: 280 LTIKGHAECVRFVKSFNIPTLVLG-GGGYTVRNVA 313
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 20/317 (6%)
Query: 13 RRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLS 72
R+V YD + H G HP P+R++ + + GI ++ + ++A + L +
Sbjct: 4 RKVSYFYDNEVGNHYY--GPNHPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTN 61
Query: 73 VHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERVA 129
H+++++N +K ++ ++ K N + +G +++G I A +V
Sbjct: 62 FHSDDYINFLKLVTPDNMHDYSKQLV-KFNVREDCPVFDGMYNFCQISSGGSIGCAVKVN 120
Query: 130 EGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVH 188
E S AI G HHA+ EA GFC N++ ++ LL ++L +D D+H
Sbjct: 121 SKE--SDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHH-----ERVLYIDIDIH 173
Query: 189 HGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCG 248
HG+ ++ F+ RV+ S H+ +G ++P D IG G Y++N P ++G
Sbjct: 174 HGDGVEEAFYTTDRVMTVSFHK--YGDYFPGTGD--VKDIGADKGKYYSLNFPLKDG-ID 228
Query: 249 DADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ 308
D Y +++ I+ V + P ++I G D+ GD LG +T G++ ++ L F
Sbjct: 229 DESYQSIFRPIIRSVMDFYRPGAVVIQCGADSLTGDRLGCFNLTLRGHAQCIEFLKSFNV 288
Query: 309 GKIVLALEGGYNLGSIS 325
+VL GGY + +++
Sbjct: 289 PLVVLG-GGGYTIKNVA 304
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 151/318 (47%), Gaps = 20/318 (6%)
Query: 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLL 71
KR+V YD + + G HP P+RI+ N L G+ ++ + +A + +
Sbjct: 8 KRKVCYYYDGDVGNYYYGQG--HPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKANAEEMT 65
Query: 72 SVHTENHVNLIKNISSKQFDSRRDRIASKLN---SIYLNEGSSEAAYLAAGSVIEVAERV 128
H+++++ +++I S + + N + +G E L+AG VA V
Sbjct: 66 KYHSDDYIKFLRSIRPDNM-SEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGG--SVASAV 122
Query: 129 AEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDV 187
+ + A+ G HHA+ EA GFC N++ +A LL ++L +D D+
Sbjct: 123 KLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYH-----QRVLYIDIDI 177
Query: 188 HHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRC 247
HHG+ ++ F+ RV+ S H+ +G ++P D IG G G Y +N P +G
Sbjct: 178 HHGDGVEEAFYTTDRVMTVSFHK--YGEYFPGTGD--LRDIGAGKGKYYAVNYPLRDG-I 232
Query: 248 GDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA 307
D Y A++ ++ V + F P +++ G D+ +GD LG +T G++ ++ + F
Sbjct: 233 DDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFN 292
Query: 308 QGKIVLALEGGYNLGSIS 325
++L GGY + +++
Sbjct: 293 LPMLMLG-GGGYTIRNVA 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,467,470
Number of Sequences: 539616
Number of extensions: 11548734
Number of successful extensions: 24956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 24533
Number of HSP's gapped (non-prelim): 115
length of query: 646
length of database: 191,569,459
effective HSP length: 124
effective length of query: 522
effective length of database: 124,657,075
effective search space: 65070993150
effective search space used: 65070993150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)