Query 006415
Match_columns 646
No_of_seqs 270 out of 1612
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 22:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 1.7E-80 3.7E-85 673.4 39.1 369 12-424 3-380 (436)
2 COG0123 AcuC Deacetylases, inc 100.0 3.6E-79 7.7E-84 649.5 32.5 309 13-339 2-313 (340)
3 PTZ00346 histone deacetylase; 100.0 4.7E-78 1E-82 650.9 37.1 316 13-342 20-341 (429)
4 PF00850 Hist_deacetyl: Histon 100.0 2.3E-78 5E-83 639.0 25.9 301 20-336 1-311 (311)
5 KOG1342 Histone deacetylase co 100.0 2E-67 4.4E-72 548.4 31.5 369 11-425 5-381 (425)
6 KOG1343 Histone deacetylase co 100.0 4.6E-60 1E-64 541.6 25.1 345 15-372 446-795 (797)
7 KOG1343 Histone deacetylase co 100.0 4.7E-49 1E-53 451.2 12.8 357 13-373 29-390 (797)
8 KOG1344 Predicted histone deac 100.0 4.3E-36 9.3E-41 296.6 13.3 289 12-322 13-305 (324)
9 KOG4059 Uncharacterized conser 99.6 1.1E-16 2.3E-21 150.3 4.4 139 439-634 23-162 (193)
10 PHA03014 hypothetical protein; 99.6 1.8E-14 4E-19 139.3 12.2 138 439-632 2-149 (163)
11 PF13772 AIG2_2: AIG2-like fam 97.7 6.5E-05 1.4E-09 65.0 6.2 75 518-632 1-78 (83)
12 cd06661 GGCT_like GGCT-like do 96.9 0.0012 2.6E-08 57.5 4.4 72 442-539 1-72 (99)
13 COG3703 ChaC Uncharacterized p 95.1 0.062 1.4E-06 53.4 7.2 163 436-641 8-182 (190)
14 KOG3182 Predicted cation trans 94.2 0.048 1E-06 54.4 3.9 78 439-542 9-92 (212)
15 PF04752 ChaC: ChaC-like prote 80.8 1 2.2E-05 44.8 2.2 33 503-537 46-78 (178)
16 KOG0121 Nuclear cap-binding pr 68.4 4.2 9E-05 38.7 2.6 44 148-194 73-121 (153)
17 COG3106 Predicted ATPase [Gene 66.2 4.2 9.2E-05 44.7 2.5 95 500-626 171-276 (467)
18 PF06094 AIG2: AIG2-like famil 56.1 71 0.0015 27.8 8.2 74 442-539 1-74 (102)
19 PF11272 DUF3072: Protein of u 55.1 17 0.00037 29.7 3.6 41 599-639 7-49 (57)
20 TIGR03018 pepcterm_TyrKin exop 53.5 1.8E+02 0.0038 28.9 11.5 23 255-277 135-157 (207)
21 COG3914 Spy Predicted O-linked 41.0 5.1E+02 0.011 30.7 13.8 164 135-336 293-481 (620)
22 cd01835 SGNH_hydrolase_like_3 39.7 89 0.0019 30.1 6.8 63 239-304 42-105 (193)
23 cd04502 SGNH_hydrolase_like_7 38.4 55 0.0012 31.0 5.0 42 263-307 45-87 (171)
24 PHA03281 envelope glycoprotein 38.0 27 0.00059 40.3 3.1 80 443-538 427-521 (642)
25 PRK13236 nitrogenase reductase 38.0 35 0.00075 36.3 3.9 34 161-199 22-55 (296)
26 cd01841 NnaC_like NnaC (CMP-Ne 37.5 85 0.0019 29.6 6.2 61 238-307 27-88 (174)
27 cd01836 FeeA_FeeB_like SGNH_hy 37.1 83 0.0018 30.2 6.1 58 238-305 44-102 (191)
28 PF00148 Oxidored_nitro: Nitro 36.3 81 0.0018 34.6 6.5 73 255-337 61-137 (398)
29 cd01833 XynB_like SGNH_hydrola 34.6 83 0.0018 29.2 5.5 42 262-306 34-76 (157)
30 cd01822 Lysophospholipase_L1_l 34.3 87 0.0019 29.4 5.6 17 263-279 59-75 (177)
31 cd01972 Nitrogenase_VnfE_like 33.8 1.5E+02 0.0033 33.2 8.2 73 254-336 75-148 (426)
32 TIGR02855 spore_yabG sporulati 32.9 1.2E+02 0.0026 32.4 6.7 59 258-317 143-206 (283)
33 cd01967 Nitrogenase_MoFe_alpha 32.7 1.4E+02 0.0031 32.9 7.7 73 255-337 74-151 (406)
34 cd03466 Nitrogenase_NifN_2 Nit 32.4 2.2E+02 0.0047 32.0 9.2 71 255-336 71-145 (429)
35 cd01832 SGNH_hydrolase_like_1 32.2 1.2E+02 0.0026 28.7 6.3 15 266-280 65-80 (185)
36 PF13472 Lipase_GDSL_2: GDSL-l 31.7 31 0.00067 31.7 2.0 41 239-282 35-76 (179)
37 cd04237 AAK_NAGS-ABP AAK_NAGS- 30.8 3.4E+02 0.0075 28.7 9.9 61 251-322 1-63 (280)
38 TIGR01969 minD_arch cell divis 30.8 50 0.0011 33.2 3.5 14 178-191 30-43 (251)
39 cd01828 sialate_O-acetylestera 30.5 1E+02 0.0022 29.0 5.4 15 266-280 46-61 (169)
40 TIGR01279 DPOR_bchN light-inde 29.9 1.8E+02 0.0039 32.4 8.0 72 255-337 71-143 (407)
41 cd04501 SGNH_hydrolase_like_4 28.5 1.2E+02 0.0027 28.8 5.7 29 250-282 45-74 (183)
42 PF09757 Arb2: Arb2 domain; I 27.5 50 0.0011 32.5 2.8 26 348-373 9-34 (178)
43 TIGR01283 nifE nitrogenase mol 27.1 2.1E+02 0.0046 32.4 8.0 72 255-337 108-184 (456)
44 PRK14476 nitrogenase molybdenu 26.6 2.2E+02 0.0049 32.3 8.1 69 256-335 80-153 (455)
45 PF03266 NTPase_1: NTPase; In 26.0 45 0.00098 32.6 2.1 53 254-316 79-133 (168)
46 TIGR01285 nifN nitrogenase mol 25.3 3E+02 0.0064 31.1 8.7 70 255-335 78-152 (432)
47 TIGR02931 anfK_nitrog Fe-only 24.5 3.4E+02 0.0074 30.9 9.1 70 256-336 80-159 (461)
48 cd00316 Oxidoreductase_nitroge 23.2 3.1E+02 0.0068 29.8 8.3 69 256-335 68-137 (399)
49 PF05582 Peptidase_U57: YabG p 22.6 2.4E+02 0.0052 30.4 6.7 59 258-317 144-207 (287)
50 PF02480 Herpes_gE: Alphaherpe 22.6 23 0.00051 40.1 -0.7 77 443-535 222-312 (439)
51 TIGR01890 N-Ac-Glu-synth amino 22.4 2.4E+02 0.0052 31.6 7.3 92 252-360 1-92 (429)
52 cd01965 Nitrogenase_MoFe_beta_ 22.3 3.6E+02 0.0079 30.1 8.7 70 255-335 68-142 (428)
53 cd01968 Nitrogenase_NifE_I Nit 21.7 3.2E+02 0.007 30.3 8.1 73 255-337 73-149 (410)
54 PF09754 PAC2: PAC2 family; I 21.6 1.3E+02 0.0027 30.1 4.5 98 160-284 10-114 (219)
55 cd01979 Pchlide_reductase_N Pc 21.6 2.8E+02 0.0061 30.7 7.5 71 256-337 75-146 (396)
56 cd01974 Nitrogenase_MoFe_beta 21.5 3.3E+02 0.0071 30.7 8.1 71 255-336 72-147 (435)
57 PRK10818 cell division inhibit 21.5 95 0.0021 31.9 3.6 16 178-193 32-47 (270)
58 PRK14478 nitrogenase molybdenu 20.7 3E+02 0.0064 31.5 7.6 73 255-337 106-182 (475)
59 TIGR01287 nifH nitrogenase iro 20.7 1.2E+02 0.0026 31.4 4.2 17 178-195 29-45 (275)
60 PF08543 Phos_pyr_kin: Phospho 20.4 6.6E+02 0.014 25.7 9.5 120 37-212 71-192 (246)
61 PF02701 zf-Dof: Dof domain, z 20.1 44 0.00095 27.9 0.6 10 153-162 16-25 (63)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.7e-80 Score=673.38 Aligned_cols=369 Identities=22% Similarity=0.390 Sum_probs=318.8
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 006415 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (646)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (646)
+++|+++||+.+..|.++. .|||+|.|++.++++|++.|+...+.+++|++|+.++|++||+++||++|++.+.....
T Consensus 3 ~~~v~~~yd~~~~~h~~g~--~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 3 RKRVSYFYDPDIGSYYYGP--GHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CceEEEEECccccCcCCcC--cCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 4679999999999999864 59999999999999999999999899999999999999999999999999987654211
Q ss_pred h---hhhhhccc-cCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCC-CCCCCCCCcceeeeCcHHHHHH
Q 006415 92 S---RRDRIASK-LNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAAS 166 (646)
Q Consensus 92 ~---~~~~~~~~-~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnvAIAA~ 166 (646)
. ....+.-. ..|++++++++++|++++|+++.||+++++|+. .||++|||| |||++++|+|||+||||||||+
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~--~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~ 158 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQA--DICVNWSGGLHHAKRSEASGFCYINDIVLGIL 158 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCC--CEEeeCCCCCCCCccCCCCceeeecHHHHHHH
Confidence 0 00111111 147899999999999999999999999999976 489999999 9999999999999999999999
Q ss_pred HHHhhCCcCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCC
Q 006415 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246 (646)
Q Consensus 167 ~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~ 246 (646)
+|++. .+||||||||||||||||+|||+||+|||+|||++. .|||+| |..+++|.|.|+||++||||++|
T Consensus 159 ~L~~~-----~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~--~ffPgt--G~~~e~G~g~G~g~~vNvPL~~G- 228 (436)
T PTZ00063 159 ELLKY-----HARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFG--DFFPGT--GDVTDIGVAQGKYYSVNVPLNDG- 228 (436)
T ss_pred HHHHh-----CCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCC--CcCCCC--CCccccCCCCCCceEEEeeCCCC-
Confidence 99874 379999999999999999999999999999999984 599986 89999999999999999999998
Q ss_pred CCchhHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHH
Q 006415 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISN 326 (646)
Q Consensus 247 ~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~ 326 (646)
++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.+||.++++.++++ ++|+++++||||++.++++
T Consensus 229 ~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~-~~pil~l~gGGY~~~~lar 307 (436)
T PTZ00063 229 IDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSL-NIPLLVLGGGGYTIRNVAR 307 (436)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhc-CCCEEEEeCccCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 6799999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----H
Q 006415 327 SVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK----V 402 (646)
Q Consensus 327 ~~~~~~~~Llg~~~~~~~~~~~p~~~~~~~i~~~~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~----~ 402 (646)
||.+++..++|.... .+...|.. .||+.. .|...|+. ..++++|.| +
T Consensus 308 ~w~~~t~~~~~~~~~--~~~~iP~~--------------~~~~~~------------~~~~~l~~-~~~~~~n~n~~~~l 358 (436)
T PTZ00063 308 CWAYETGVILNKHDE--MSDQISLN--------------DYYDYY------------APDFQLHL-QPSNIPNYNSPEHL 358 (436)
T ss_pred HHHHHHHHHhCCccc--CCccCCCC--------------cchhhc------------CCCeEeec-CcccccCCCCHHHH
Confidence 999999999996311 11122322 244443 23333443 235566655 8
Q ss_pred HHHHHHHHHHhhcccCCCCCcc
Q 006415 403 ETLEAVLQVALSKLKVDDGHAE 424 (646)
Q Consensus 403 ~~~~~~~~~~l~~l~~~~~~~~ 424 (646)
+.++..|+|+|+.|+++|+-|.
T Consensus 359 ~~~~~~~~~~l~~~~~ap~v~~ 380 (436)
T PTZ00063 359 EKIKVKILENLRYLEHAPGVQF 380 (436)
T ss_pred HHHHHHHHHHHhcCCCCCeecc
Confidence 9999999999999999997764
No 2
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-79 Score=649.54 Aligned_cols=309 Identities=41% Similarity=0.740 Sum_probs=288.1
Q ss_pred CeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchhh
Q 006415 13 RRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDS 92 (646)
Q Consensus 13 ~~~~lvyd~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~~~~~ 92 (646)
|++.++|++.++.|..+. .|||+|.|++.+.++|++.++...+.+++|+++++++|++||+++||++|++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~--~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~-- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPPP--GHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG-- 77 (340)
T ss_pred CcceEeeCHHHhcCCCCC--CCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc--
Confidence 678999999999998764 6999999999999999999988888889999999999999999999999999876521
Q ss_pred hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCCCCCCCCCCcceeeeCcHHHHHHHHHhhC
Q 006415 93 RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNER 172 (646)
Q Consensus 93 ~~~~~~~~~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnvAIAA~~l~~~~ 172 (646)
......+++++++++++|++++|++++|++.+++|+ +++||++|||||||++++++|||+|||+||||++|+++
T Consensus 78 ----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~-~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~- 151 (340)
T COG0123 78 ----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGE-DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKK- 151 (340)
T ss_pred ----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCc-cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHc-
Confidence 112235789999999999999999999999999998 89999999999999999999999999999999999974
Q ss_pred CcCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCCCCchhH
Q 006415 173 PELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252 (646)
Q Consensus 173 ~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~~gD~~Y 252 (646)
|++||+|||||||||||||+|||+||+|+|+|+|+++. .|||+| |..+++|+|. +|++||||||+| ++|++|
T Consensus 152 ---~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~-~~yPgt--g~~~e~g~g~-~g~~vNiPLp~g-~~d~~y 223 (340)
T COG0123 152 ---GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGR-PFYPGT--GGADEIGEGK-EGNNVNIPLPPG-TGDDSY 223 (340)
T ss_pred ---CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCC-CCCCcC--CCccccccCc-ccceEeeecCCC-CCcHHH
Confidence 68999999999999999999999999999999999754 799997 5699999999 999999999998 999999
Q ss_pred HHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccC---CcEEEEeCCCCCcchHHHHHH
Q 006415 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---GKIVLALEGGYNLGSISNSVL 329 (646)
Q Consensus 253 l~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~---grvv~vleGGY~~~~la~~~~ 329 (646)
+.+|+.+|+|++++|+||+||||||||+|.+||||+|+||.++|.++++++++++. +|+++||||||+.+.+++++.
T Consensus 224 ~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~ 303 (340)
T COG0123 224 LEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLV 303 (340)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875 599999999999999999999
Q ss_pred HHHHHHcCCC
Q 006415 330 ACMNVLLEDK 339 (646)
Q Consensus 330 ~~~~~Llg~~ 339 (646)
+++..|.|..
T Consensus 304 ~~~~~l~~~~ 313 (340)
T COG0123 304 AFLAGLAGLV 313 (340)
T ss_pred HHHHHHcCCC
Confidence 9999999954
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=4.7e-78 Score=650.86 Aligned_cols=316 Identities=24% Similarity=0.381 Sum_probs=280.8
Q ss_pred CeEEEE----ecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhccc
Q 006415 13 RRVGLL----YDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSK 88 (646)
Q Consensus 13 ~~~~lv----yd~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~ 88 (646)
+++.+| |-+++..+.++ ..|||+|+|++++++.|++.|+...+.++.|++|+.++|++||+++||++|++.+..
T Consensus 20 ~~~~~~~~~~y~~~~~~~~~~--~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 20 GRVALIDTSGYASDMNISAFV--PQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ceeEEEecCccccccccccCC--CcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 467899 56666665554 569999999999999999999998898999999999999999999999999874321
Q ss_pred chh-hhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCC-CCCCCCCCcceeeeCcHHHHHH
Q 006415 89 QFD-SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAAS 166 (646)
Q Consensus 89 ~~~-~~~~~~~~~~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnvAIAA~ 166 (646)
... ...........|++++++++++|++++|+++.|+++|++|+.+ +|+++||| |||+++++||||+|||+||||+
T Consensus 98 ~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~--~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~ 175 (429)
T PTZ00346 98 SWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVD--VAVHWGGGMHHSKCGECSGFCYVNDIVLGIL 175 (429)
T ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCC--EEEeCCCCcCcCCCCCCCcchHHhHHHHHHH
Confidence 100 0000000112478999999999999999999999999999875 67788888 9999999999999999999999
Q ss_pred HHHhhCCcCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCC
Q 006415 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246 (646)
Q Consensus 167 ~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~ 246 (646)
+|++. .+||||||||||||||||+|||+||+|||+|||+++. .|||+| |..+++|.|.|+||++|||||+|
T Consensus 176 ~ll~~-----~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~-~fyPgt--G~~~e~G~g~G~g~~vNVPL~~G- 246 (429)
T PTZ00346 176 ELLKC-----HDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGE-SFFPGT--GHPRDVGYGRGRYYSMNLAVWDG- 246 (429)
T ss_pred HHHHc-----CCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCC-CCCCCC--CCccccCCCCCceeEEeeeCCCC-
Confidence 99874 4799999999999999999999999999999999853 599996 89999999999999999999998
Q ss_pred CCchhHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHH
Q 006415 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISN 326 (646)
Q Consensus 247 ~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~ 326 (646)
++|++|+.+|+++|.|++++|+||+||||||||+|.+||||+|+||.+||.+++++++++ ++|+++++||||++.++++
T Consensus 247 ~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~-~~plv~vleGGY~~~~lar 325 (429)
T PTZ00346 247 ITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDL-GIPMLALGGGGYTIRNVAK 325 (429)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhc-CCCEEEEeCCcCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 6799999999999999999
Q ss_pred HHHHHHHHHcCCCCCC
Q 006415 327 SVLACMNVLLEDKPVA 342 (646)
Q Consensus 327 ~~~~~~~~Llg~~~~~ 342 (646)
||.+++..|+|.+.+.
T Consensus 326 ~w~~~t~~l~g~~i~~ 341 (429)
T PTZ00346 326 LWAYETSILTGHPLPP 341 (429)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 9999999999986543
No 4
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=2.3e-78 Score=638.97 Aligned_cols=301 Identities=45% Similarity=0.819 Sum_probs=244.0
Q ss_pred cccccccCCCCCCCCCCChHHHHHHHHHHHHc-CCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchhhhhh---
Q 006415 20 DERMCKHNTPDGDYHPENPNRIKAIWNKLQAA-GIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRRD--- 95 (646)
Q Consensus 20 d~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~-gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~~~~~~~~--- 95 (646)
||.|. |..+ ..|||+|+|++.+++.|++. ++.+. ++|+.++|++|||++||+.|++.+.........
T Consensus 1 ~~~~~-~~~~--~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~ 71 (311)
T PF00850_consen 1 HPQYQ-HQLG--DGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSP 71 (311)
T ss_dssp ----T-T-CC--TTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHH
T ss_pred CCccc-CCCC--CCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccc
Confidence 35555 5544 56999999999999999986 76543 899999999999999999999877543221100
Q ss_pred hhc--cccCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCCCCCCCCCCcceeeeCcHHHHHHHHHhhCC
Q 006415 96 RIA--SKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERP 173 (646)
Q Consensus 96 ~~~--~~~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnvAIAA~~l~~~~~ 173 (646)
... ....++|++++++++|++++|++++|+++|++|+.+++||++|||||||.+++++|||+||||||||++|+++
T Consensus 72 ~~~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppgHHA~~~~a~GFC~~Nnvaiaa~~l~~~-- 149 (311)
T PF00850_consen 72 EFPNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPGHHAERDRAMGFCYFNNVAIAAKYLRKK-- 149 (311)
T ss_dssp HHCCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS--TT-BTTBBBTTBSS-HHHHHHHHHHHT--
T ss_pred ccccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccccccCcCcCcceeeeccHHHHHHHHhhc--
Confidence 000 1256899999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred cCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCC-CCCCCCCccccCCCCccceEeeeCCCCCCCchhH
Q 006415 174 ELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYP-ANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252 (646)
Q Consensus 174 ~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyP-gt~~G~~~eiG~g~G~G~~iNVPLp~g~~gD~~Y 252 (646)
+|++||+|||||||||||||+|||+||+|||+|||+++ +.||| +| |+.+++|+|+|+|+++|||||++ ++|++|
T Consensus 150 -~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~-~~~yP~~t--G~~~e~G~~~g~g~~~NipL~~g-~~d~~y 224 (311)
T PF00850_consen 150 -YGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYP-GNFYPFGT--GFPDEIGEGKGKGYNLNIPLPPG-TGDDEY 224 (311)
T ss_dssp -TTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-C-TTSTTTSS----TT--ESGGGTTSEEEEEE-TT-EBHHHH
T ss_pred -cccceEEEEEeCCCCcccchhheeCCCCEEecCccccc-cccCCCcC--CCccccCCCcccceeEecccccc-cchHHH
Confidence 47899999999999999999999999999999999985 56999 65 99999999999999999999998 999999
Q ss_pred HHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccC---CcEEEEeCCCCCcchHHHHHH
Q 006415 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---GKIVLALEGGYNLGSISNSVL 329 (646)
Q Consensus 253 l~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~---grvv~vleGGY~~~~la~~~~ 329 (646)
+.+|+++|.|++++|+||+||||||||+|.+||+|+++||+++|.+++++|++++. +|++++|||||++++++++|.
T Consensus 225 ~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~ 304 (311)
T PF00850_consen 225 LEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWA 304 (311)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHH
T ss_pred HHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975 499999999999999999999
Q ss_pred HHHHHHc
Q 006415 330 ACMNVLL 336 (646)
Q Consensus 330 ~~~~~Ll 336 (646)
+++++|.
T Consensus 305 ~~~~~L~ 311 (311)
T PF00850_consen 305 AVIAALA 311 (311)
T ss_dssp HHHHHH-
T ss_pred HHHHHhC
Confidence 9999883
No 5
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-67 Score=548.41 Aligned_cols=369 Identities=25% Similarity=0.446 Sum_probs=328.9
Q ss_pred CCCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccch
Q 006415 11 IKRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQF 90 (646)
Q Consensus 11 ~~~~~~lvyd~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~~~ 90 (646)
.++++.+.|+++....+. +..||+.|.|++++.+++...||...+.+.+|..|+.+|+.++||.+||+++++.++...
T Consensus 5 ~k~~V~y~yd~~vg~~~Y--g~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~ 82 (425)
T KOG1342|consen 5 IKRRVSYFYDPDVGNFHY--GQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENM 82 (425)
T ss_pred CCceEEEEecCccccccc--cCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccc
Confidence 457899999999986554 567999999999999999999999999999999999999999999999999999876543
Q ss_pred hh---hhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCC-CCCCCCCCcceeeeCcHHHHHH
Q 006415 91 DS---RRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAAS 166 (646)
Q Consensus 91 ~~---~~~~~~~~~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnvAIAA~ 166 (646)
.. ....+ ...+|.++..+.++.+++.+|++|.||.++..++++ +|+.+.+| |||++++|+|||++||++++|.
T Consensus 83 ~~~~~~~~~f-Nvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~d--IaINW~GGlHHAKK~eASGFCYvNDIVL~IL 159 (425)
T KOG1342|consen 83 ETFNKELKQF-NVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECD--IAINWAGGLHHAKKSEASGFCYVNDIVLGIL 159 (425)
T ss_pred cccchHHHhc-CCCCCCccccCHHHHHHHhcccchHHHHHhCCCCce--EEEecCcccccccccccCcceeehHHHHHHH
Confidence 21 11111 123577888999999999999999999999998865 67889999 9999999999999999999999
Q ss_pred HHHhhCCcCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCC
Q 006415 167 FLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGR 246 (646)
Q Consensus 167 ~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~ 246 (646)
.|++. .+||++||+|+|||||+|++||..+||+|+|+|.|.+ .||||| |+..++|.|+|+.|.|||||..|
T Consensus 160 eLlK~-----h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~-~fFPGT--G~l~d~G~~kGkyyavNVPL~dG- 230 (425)
T KOG1342|consen 160 ELLKY-----HKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGP-GFFPGT--GDLSDIGAGKGKYYAVNVPLKDG- 230 (425)
T ss_pred HHHHh-----CCceEEEEecccCCccHHHHHhccceeEEEEEEeccC-CCCCCC--CcceeccCCCCceEEEccchhcc-
Confidence 99975 3699999999999999999999999999999999854 499997 89999999999999999999998
Q ss_pred CCchhHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHH
Q 006415 247 CGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISN 326 (646)
Q Consensus 247 ~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~ 326 (646)
++|+.|..+|+.||-++++.|+|++||+|||.|++.+|+||.++||..|.+++.+.++++ +-+++++.+|||+++++|+
T Consensus 231 idD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksf-n~pllvlGGGGYT~rNVAR 309 (425)
T KOG1342|consen 231 IDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSF-NLPLLVLGGGGYTLRNVAR 309 (425)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHc-CCcEEEecCCccchhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999998 4689999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhccccccccccCCCCCccccCCCChhhhhh----H
Q 006415 327 SVLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLADELPTKLTSLKAPPAHMISSSDSEDEDTK----V 402 (646)
Q Consensus 327 ~~~~~~~~Llg~~~~~~~~~~~p~~~~~~~i~~~~~~~~~~w~~l~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~----~ 402 (646)
||+..+..+++...+...|. . .|...+ +|.+.|+.. .+++||.| |
T Consensus 310 cWtYeT~v~~~~~~~~elP~----n--------------~y~~yF------------~PDy~l~~~-~~~~~n~Nt~~~l 358 (425)
T KOG1342|consen 310 CWTYETGVLLDQELPNELPY----N--------------DYFEYF------------GPDYKLHID-PSNMENFNTPHYL 358 (425)
T ss_pred HHHHHhhhhcCccccccCCC----c--------------cchhhh------------CCCcccccC-ccchhcccCHHHH
Confidence 99999999999776554332 2 355555 466678885 49999988 9
Q ss_pred HHHHHHHHHHhhcccCCCCCccc
Q 006415 403 ETLEAVLQVALSKLKVDDGHAEL 425 (646)
Q Consensus 403 ~~~~~~~~~~l~~l~~~~~~~~~ 425 (646)
++++.++.|+|++|+++||.|..
T Consensus 359 ~~i~~~~~enL~~l~~apSVqm~ 381 (425)
T KOG1342|consen 359 ESIRNEILENLRMLQHAPSVQMQ 381 (425)
T ss_pred HHHHHHHHHHHHhccCCCccccc
Confidence 99999999999999999988753
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.6e-60 Score=541.59 Aligned_cols=345 Identities=38% Similarity=0.648 Sum_probs=291.8
Q ss_pred EEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchhhhh
Q 006415 15 VGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFDSRR 94 (646)
Q Consensus 15 ~~lvyd~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~~~~~~~ 94 (646)
+..+.+-.+..|..-....|++.|.|...-+ . .|+..+|..+ |+.++|+.||+..|+..+.+.-........
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~p~r~~t~~---~-~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~ 517 (797)
T KOG1343|consen 446 HALSADQAELELAGLDRSRSPESPARFTTGL---H-TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLK 517 (797)
T ss_pred hcccccccccccccccccCCcccchhhhccc---c-cccccccccc----cchhhhhhcccchhhcccchhhhcccccch
Confidence 3344444444444333346899999922222 1 7888888776 999999999999999986522111110000
Q ss_pred hhhccccCceecccChHHHHHHHHhHHHHHHHHH--HccccceeEEeeCCCCCCCCCCCCcceeeeCcHHHHHHHHHhhC
Q 006415 95 DRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERV--AEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNER 172 (646)
Q Consensus 95 ~~~~~~~~~~y~~~~s~eaA~lAaG~~l~aad~v--~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnvAIAA~~l~~~~ 172 (646)
.........+++.+.+|.++..++|++..+++.+ +.+++.+|||++|||||||.+..+||||+|||+|||++++++..
T Consensus 518 ~~~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppGHha~~~~a~gfc~fn~vaiaak~l~~~~ 597 (797)
T KOG1343|consen 518 FESRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQQRS 597 (797)
T ss_pred hhhhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCccccccCCcceeeeecchhhhhHHhhhhh
Confidence 0011223467888899999999999988888888 56667779999999999999999999999999999999998753
Q ss_pred CcCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCCCCchhH
Q 006415 173 PELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDADY 252 (646)
Q Consensus 173 ~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~~gD~~Y 252 (646)
.++||+|||||||||||||.+||.||+|||+|+|++++|.|||++ |..+++|.++|.|+|+||||+.+..+|.+|
T Consensus 598 ---~~~rilivdwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~--g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey 672 (797)
T KOG1343|consen 598 ---KASRILIVDWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGS--GAPDEVGKGEGVGFNVNVAWTGGLDPDAEY 672 (797)
T ss_pred ---hhcceEEEeecccCCcceeeeeccCccccccccchhccCCcCCCC--CCchhcccccccceeecccccCCCCCCHHH
Confidence 478999999999999999999999999999999999999999996 999999999999999999999886778999
Q ss_pred HHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHH
Q 006415 253 LAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACM 332 (646)
Q Consensus 253 l~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~~ 332 (646)
+.+|+.+++||+++|+||+|+||+|||++.+||||++.+|.++|+.+++.|+++|+||++++|||||+..+++++..+|+
T Consensus 673 ~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~ 752 (797)
T KOG1343|consen 673 LAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACV 752 (797)
T ss_pred HHHHHHhhHHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCC---CCCCChhHHHHHHHHHHHHhcccchhh
Q 006415 333 NVLLEDKPVAGSS---EAYPFESTWRVIQAVRKKLSAFWPTLA 372 (646)
Q Consensus 333 ~~Llg~~~~~~~~---~~~p~~~~~~~i~~~~~~~~~~w~~l~ 372 (646)
++|+|.+.+.+.+ ...|..++..+++++++++++||+|++
T Consensus 753 ~~llg~~~p~~~~~~~~~~~~~~a~~~l~~~~~~~~~~w~~~~ 795 (797)
T KOG1343|consen 753 RALLGDSLPPLSEAYLPQKPNSNAVATLEKVIEVQSKYWSCLQ 795 (797)
T ss_pred HhccCCCCCCccccccCCCcchHHHHHHHHHHHhhhccccccc
Confidence 9999988666322 234556788999999999999999985
No 7
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-49 Score=451.19 Aligned_cols=357 Identities=35% Similarity=0.540 Sum_probs=319.2
Q ss_pred CeEEEEecccccccCCCCCCCC-CCChHHHHHHHHHHHHcCCCCcceEecC-CCCCHHHHhccCCHHHHHHHHHhcccch
Q 006415 13 RRVGLLYDERMCKHNTPDGDYH-PENPNRIKAIWNKLQAAGIPQRCVVLNA-KEAKDKNLLSVHTENHVNLIKNISSKQF 90 (646)
Q Consensus 13 ~~~~lvyd~~~~~H~~~~~~~H-PE~P~Rl~~i~~~L~~~gl~~~~~~~~p-~~A~~~eL~~VHs~~YI~~l~~~~~~~~ 90 (646)
+++.++|++.+..|...-...| ++.|+|++.+.+.+...++.+.|.+..+ +.++.++++.||+++|++.+........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 4789999999999963211223 4889999999999999999998887777 8899999999999999999986552222
Q ss_pred hhhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCCCCCCCCCCcceeeeCcHHHHHHHHHh
Q 006415 91 DSRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLN 170 (646)
Q Consensus 91 ~~~~~~~~~~~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnvAIAA~~l~~ 170 (646)
....+.+.+.++.+|+++.++.+|.++.|+++..++.++.|++.|+++.+|||||||.++...|||+|||||++++..+.
T Consensus 109 e~~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~ 188 (797)
T KOG1343|consen 109 EEGLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLL 188 (797)
T ss_pred hhhhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhcccc
Confidence 22234455668899999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred hCCcCCcceEEEEEeecccCCcccccccc--CCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCCCC
Q 006415 171 ERPELGINKILIVDWDVHHGNSTQKMFWK--DPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCG 248 (646)
Q Consensus 171 ~~~~~g~~RVlIVD~DvHHGNGTq~iF~~--Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~~g 248 (646)
.+ ..+||+|+|||+|||+|||..|++ |++|+++|+|+++.|.|||....|..+.+|.|.|.|+++|+||...+++
T Consensus 189 ~~---~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~ 265 (797)
T KOG1343|consen 189 RR---KKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMT 265 (797)
T ss_pred cc---ccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCc
Confidence 43 378999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCC-CCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH
Q 006415 249 DADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDP-LGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS 327 (646)
Q Consensus 249 D~~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~Dp-LG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~ 327 (646)
|.+|.++|.++++|...+|+||++++|||||++.+|+ +|.|..|+.+|.+++.+.+-+.+++++++++|||+++.++++
T Consensus 266 ~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~ 345 (797)
T KOG1343|consen 266 DADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS 345 (797)
T ss_pred chhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh
Confidence 9999999999999999999999999999999999997 799999999999999995555458999999999999999988
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCChhHHHHHHHHHHHHhcccchhhc
Q 006415 328 VLACMNVLLEDKPVAGSSEAYPFESTWRVIQAVRKKLSAFWPTLAD 373 (646)
Q Consensus 328 ~~~~~~~Llg~~~~~~~~~~~p~~~~~~~i~~~~~~~~~~w~~l~~ 373 (646)
...+..|+|++.........|.+++...+..+.+.+..+|+|+..
T Consensus 346 -~~~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~~w~~~~~ 390 (797)
T KOG1343|consen 346 -QLVLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQEDRWPCEGG 390 (797)
T ss_pred -hhhHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhcccccccC
Confidence 888999999886665444458899999999999999999999865
No 8
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=4.3e-36 Score=296.64 Aligned_cols=289 Identities=24% Similarity=0.366 Sum_probs=231.5
Q ss_pred CCeEEEEecccccccCCCCCCCCCCChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHHhcccchh
Q 006415 12 KRRVGLLYDERMCKHNTPDGDYHPENPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKNISSKQFD 91 (646)
Q Consensus 12 ~~~~~lvyd~~~~~H~~~~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~~~~~~~~ 91 (646)
..++++||++.|..-..+-...||.+..+-..+.+.|.+.++++.-.+++|.+++.++|++|||++|++.++..-....-
T Consensus 13 ~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~I 92 (324)
T KOG1344|consen 13 AGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQI 92 (324)
T ss_pred cccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeEE
Confidence 35789999999988777766789999999999999999999998888899999999999999999999999864332100
Q ss_pred hhhhhhccccCceecccChHHHHHHHHhHHHHHHHHHHccccceeEEeeCCCC-CCCCCCCCcceeeeCcHHHHHHHHHh
Q 006415 92 SRRDRIASKLNSIYLNEGSSEAAYLAAGSVIEVAERVAEGELNSAFAIVRPPG-HHAEPDEAMGFCLYNNVAVAASFLLN 170 (646)
Q Consensus 92 ~~~~~~~~~~~~~y~~~~s~eaA~lAaG~~l~aad~v~~g~~~~afalvRPPG-HHA~~~~a~GFC~fNnvAIAA~~l~~ 170 (646)
..-.+....+..++......--++-+|+++.|+...+ +.++|+.-++| |||..+++.|||.+-|+.+|+..|-+
T Consensus 93 -~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAl----e~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFe 167 (324)
T KOG1344|consen 93 -TEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLAL----ERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFE 167 (324)
T ss_pred -EeccccccCchhhhhhhhccceeeccCceeehhhhhh----hcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHh
Confidence 0000000111222322333445667788888887664 46788887788 99999999999999999999999976
Q ss_pred hCCcCCcceEEEEEeecccCCccccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCccceEeeeCCCCCCCch
Q 006415 171 ERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLGYNINVPWENGRCGDA 250 (646)
Q Consensus 171 ~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G~~iNVPLp~g~~gD~ 250 (646)
+. -+.|+.|||+|+|+|||-+.-|.+| .|..+.+. +...||... .. -+...-.|.|..| +.|+
T Consensus 168 r~---~isr~mivDLDAHQGNghErdf~~~-~vyi~d~y---nr~iyp~D~--~A-------k~~Ir~kVEl~~g-Tedd 230 (324)
T KOG1344|consen 168 RK---AISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMY---NRFIYPRDH--VA-------KESIRCKVELRNG-TEDD 230 (324)
T ss_pred hh---hhhheEEEecccccCCccccccccc-eeehhhhh---hhhccchhH--HH-------HHHhhheeeeecC-CCch
Confidence 53 3899999999999999999999988 66666654 345799742 11 1122346777777 8999
Q ss_pred hHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccC---CcEEEEeCCCCCcc
Q 006415 251 DYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQ---GKIVLALEGGYNLG 322 (646)
Q Consensus 251 ~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~---grvv~vleGGY~~~ 322 (646)
+|+.-+++.++..+.+|+||+||+.||.|...|||||.+.+|++|.-...+++.+++. .|+|++..|||--.
T Consensus 231 eYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~ 305 (324)
T KOG1344|consen 231 EYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA 305 (324)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh
Confidence 9999999999999999999999999999999999999999999999999999988763 47999999999643
No 9
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.1e-16 Score=150.33 Aligned_cols=139 Identities=24% Similarity=0.400 Sum_probs=113.3
Q ss_pred eEEEEecCCccchhhHHHHhhCCccCCCCCccCCCCCCCCcccccceeccceeeeeccCCCCcCCceeeEecCCCCCCcc
Q 006415 439 DVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPECDCRHK 518 (646)
Q Consensus 439 ~vWYasyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~~~~~~~ 518 (646)
.|.|+.|||||+.+|++ .|+|+.-+.-..++=.+||.||++| ..|+ |++|.|.|.+.. .
T Consensus 23 ~FlYFafGSNlL~~RIh-----------------~rnpsA~~~c~a~L~dfrLdFan~S-~~W~-G~vATI~~t~Gd--e 81 (193)
T KOG4059|consen 23 LFLYFAFGSNLLIKRIH-----------------IRNPSAVRICPALLPDFRLDFANES-AGWS-GSVATIVPTQGD--E 81 (193)
T ss_pred hhhhhhcccchhhhhee-----------------ecCCCceeeccccCcceeeeccccc-cccc-cceeEEecCCCC--e
Confidence 39999999999999999 8999999999999999999999998 5899 999999999984 4
Q ss_pred eeeeehhhchhhHHHHHHhhcCCCCCCCCCCCCcchhhhhhccccccccccCCCcccceEEeee-eCCcceEEEecCCcc
Q 006415 519 AYLCLYRITLEQFNDVLLQENVYSDDVSSPLFDTNDLNSVANKKAVSLEALKNGWYHNVVYLGK-EHGIPILTMTCSLSA 597 (646)
Q Consensus 519 t~~r~y~it~~Qf~di~~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~lG~-~~g~pilT~T~~~~~ 597 (646)
+||+.|++.++..+++..||. ++-|-|+.+..-.+ ..|.- +||..=.
T Consensus 82 VWG~vWKm~~snl~slDeQEg-----------------------------v~~G~Y~~~~V~V~t~eg~~---itcR~Yl 129 (193)
T KOG4059|consen 82 VWGTVWKMDLSNLPSLDEQEG-----------------------------VSQGIYEPRTVYVKTHEGES---ITCRAYL 129 (193)
T ss_pred EEEEEEEcccccCccchhhhc-----------------------------ccccceEEEEEEEecCCCce---eehhHhh
Confidence 999999999999999999996 56788887765554 55543 4664322
Q ss_pred cccccCCCCCCCCCChhHHHHHHHhhhhcCCCCHHHH
Q 006415 598 VGKFKSGEFPLRAPAPPYTNTLIKGLVEGKQLSEEEA 634 (646)
Q Consensus 598 ~~~~~~~~~~~~~Ps~~Yl~~l~~Gl~e~~~~~~~~~ 634 (646)
+..+. +.|. +||+.|...|.+|.+|. +++++=+
T Consensus 130 ~snl~--~~P~-~PSp~Yk~~i~~GAkEn-~lP~dY~ 162 (193)
T KOG4059|consen 130 LSNLY--ELPK-QPSPTYKQCIVKGAKEN-SLPEDYV 162 (193)
T ss_pred hhhhh--hccC-CCCchHHhhhhhccccc-CCcHHHH
Confidence 21122 2222 69999999999999999 7887633
No 10
>PHA03014 hypothetical protein; Provisional
Probab=99.57 E-value=1.8e-14 Score=139.32 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=104.1
Q ss_pred eEEEEecCCccchhhHHHHhhCCccCCCCCccCCCCCCCCcccccceeccceeeeeccCCCCcCCceeeEecCCCCCCcc
Q 006415 439 DVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPECDCRHK 518 (646)
Q Consensus 439 ~vWYasyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~~~~~~~ 518 (646)
+-||++|||||+.+++. +.||=| |++......++..|+.-|.- | ..|+ ||+|.|.|+++..
T Consensus 2 ~~~YfAYGSNl~~~qm~------------~Rcp~~--~~a~~vg~a~L~~~~~~L~f-~-~~~~-Ga~ATIvp~~g~~-- 62 (163)
T PHA03014 2 YKYYFGYGANQNINYLI------------HMHKLK--IDFLNIKIGIILGHSFKLCY-S-KEID-SVIASIKKDDNGI-- 62 (163)
T ss_pred ceEEEEEccCcCHHHHH------------HhCCCC--CCCceEEEEEeeccceEEec-c-CCcC-CceEEEEECCCCE--
Confidence 56999999999999998 333322 37777778888877555552 3 4797 9999999998854
Q ss_pred eeeeehhhchhhHHHHHHhhcCCCCCCCCCCCCcchhhhhhccccccccccCCCcccceEEeeeeCC--cceEEEec--C
Q 006415 519 AYLCLYRITLEQFNDVLLQENVYSDDVSSPLFDTNDLNSVANKKAVSLEALKNGWYHNVVYLGKEHG--IPILTMTC--S 594 (646)
Q Consensus 519 t~~r~y~it~~Qf~di~~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~lG~~~g--~pilT~T~--~ 594 (646)
++|.+|+|+.++..++..||. +..+.|+.+....+..| .++..+|= -
T Consensus 63 V~Gvlw~i~~~dl~~LD~~EG-----------------------------vp~~~Y~~~~v~V~~~~~~~~~~a~~Y~~~ 113 (163)
T PHA03014 63 VFGILYEFNESIMKKFDKQEF-----------------------------IDKNIYKLAKMNVLDLEDEKIIEAQAYKAI 113 (163)
T ss_pred EEEEEEEeCHHHHHHHhhhcC-----------------------------CCcCceEEEEEEEEeCCCCcEEEEEEEehh
Confidence 999999999999999999996 33577999887777544 44544444 1
Q ss_pred CcccccccCCCCCC---CCCChhHHHHHHHhhhhcCCC---CHH
Q 006415 595 LSAVGKFKSGEFPL---RAPAPPYTNTLIKGLVEGKQL---SEE 632 (646)
Q Consensus 595 ~~~~~~~~~~~~~~---~~Ps~~Yl~~l~~Gl~e~~~~---~~~ 632 (646)
.. ...+. .+||+.|+++|++|.+|. |+ +..
T Consensus 114 ~~-------~~~~~~~~~~Ps~~Yl~~I~~Ga~e~-Gl~~~P~~ 149 (163)
T PHA03014 114 LD-------DDNNMFYDAPNFNIYKDIIIDALIEN-NILDYPLW 149 (163)
T ss_pred cC-------CCcccccCCCChHHHHHHHHHHHHHh-CCCCCcHH
Confidence 11 01122 599999999999999998 78 654
No 11
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=97.74 E-value=6.5e-05 Score=65.00 Aligned_cols=75 Identities=21% Similarity=0.363 Sum_probs=54.7
Q ss_pred ceeeeehhhchhhHHHHHHhhcCCCCCCCCCCCCcchhhhhhccccccccccCCCcccceEEeeee-CCcceE--EEecC
Q 006415 518 KAYLCLYRITLEQFNDVLLQENVYSDDVSSPLFDTNDLNSVANKKAVSLEALKNGWYHNVVYLGKE-HGIPIL--TMTCS 594 (646)
Q Consensus 518 ~t~~r~y~it~~Qf~di~~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~lG~~-~g~pil--T~T~~ 594 (646)
+++|.+|+|+.+++..+..||. ++.+.|+.+..-... +|.++. |+.+.
T Consensus 1 ~V~Gvly~l~~~d~~~LD~~Eg-----------------------------~~~g~Y~~~~v~V~~~~g~~~~a~tY~~~ 51 (83)
T PF13772_consen 1 RVWGVLYELSEEDLESLDRYEG-----------------------------VPIGAYRRIEVTVSTADGKPVEAFTYVAN 51 (83)
T ss_dssp EEEEEEEEEEGGGHHHHHHHTT-----------------------------TTTTSEEEEEEEEEETTCEEEEEEEEEES
T ss_pred CEEEEEEEECHHHHHHHHHhcC-----------------------------CCCCCEEEEEEEEEcCCCCEEEEEEEEcC
Confidence 3799999999999999999997 346679888777776 775554 55554
Q ss_pred CcccccccCCCCCCCCCChhHHHHHHHhhhhcCCCCHH
Q 006415 595 LSAVGKFKSGEFPLRAPAPPYTNTLIKGLVEGKQLSEE 632 (646)
Q Consensus 595 ~~~~~~~~~~~~~~~~Ps~~Yl~~l~~Gl~e~~~~~~~ 632 (646)
.. +..+||..|+++|++|.+|. ||+++
T Consensus 52 ~~----------~~~~Ps~~Yl~~i~~GA~e~-gLp~~ 78 (83)
T PF13772_consen 52 PK----------PEGPPSDRYLDLILRGAREH-GLPAE 78 (83)
T ss_dssp SE----------EE----HHHHHHHHHHHHHC-T--HH
T ss_pred CC----------CCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence 42 22689999999999999998 79875
No 12
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=96.88 E-value=0.0012 Score=57.51 Aligned_cols=72 Identities=18% Similarity=0.061 Sum_probs=54.3
Q ss_pred EEecCCccchhhHHHHhhCCccCCCCCccCCCCCCCCcccccceeccceeeeeccCCCCcCCceeeEecCCCCCCcceee
Q 006415 442 YASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPECDCRHKAYL 521 (646)
Q Consensus 442 YasyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~~~~~~~t~~ 521 (646)
|+.|||||+.+++... .+.++......+--++++|...| +.+.+-|..+. .+.|
T Consensus 1 ~F~YGsl~~~~~~~~~-----------------~~~~~~~~~a~l~g~~l~~~~~~-------~~p~~~~~~~~--~v~G 54 (99)
T cd06661 1 LFVYGTLMDGEVLHAR-----------------LGRALFLGPATLKGYRLVFGGGS-------GYPGLVPGPGA--RVWG 54 (99)
T ss_pred CEEeccCCChhHhHhh-----------------CCCCceEEEEEecCcEEEecCCC-------ccCEEEeCCCC--EEEE
Confidence 5789999999999843 22333444444447788887653 56777776663 5999
Q ss_pred eehhhchhhHHHHHHhhc
Q 006415 522 CLYRITLEQFNDVLLQEN 539 (646)
Q Consensus 522 r~y~it~~Qf~di~~QE~ 539 (646)
.+|+|+.+++.-+...|.
T Consensus 55 ~v~~i~~~~l~~LD~~E~ 72 (99)
T cd06661 55 ELYEVDPEDLARLDAFEG 72 (99)
T ss_pred EEEEECHHHHHhhhhhcC
Confidence 999999999999999996
No 13
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.062 Score=53.43 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=92.9
Q ss_pred ccceEEEEecCCccchhhHHHHhhCCccCCCCCccCCCCCCCCccc---ccceeccceeeeeccCCCCcCCceeeEecCC
Q 006415 436 SKVDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKE---ILWKTFPHHLFFGHDSSHTWGPGGVAFLNPE 512 (646)
Q Consensus 436 ~~~~vWYasyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~---~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~ 512 (646)
+++.+|++.|||=||.++|. -....+-.. -+.+-+-...++|+... .|=|+-++.
T Consensus 8 ~~~~~WVFgYGSLmW~P~f~-----------------~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~----PGlvl~L~~- 65 (190)
T COG3703 8 DPDELWVFGYGSLMWNPGFE-----------------FTEVRRATLHGYHRSFCLRSTDHRGTAEQ----PGLVLGLDR- 65 (190)
T ss_pred CCCCeEEEEecceeecCCcc-----------------ccceeEEEEecceeEEEEEEeeecCCcCC----CceEEEeeC-
Confidence 45669999999999999987 111111111 33445556667777653 488888883
Q ss_pred CCCCcceeeeehhhc----hhhHHHHHHhhcCCCCCCCCCCCCcchhhhhhccccccccccCCCccc-ceEEeeeeCCcc
Q 006415 513 CDCRHKAYLCLYRIT----LEQFNDVLLQENVYSDDVSSPLFDTNDLNSVANKKAVSLEALKNGWYH-NVVYLGKEHGIP 587 (646)
Q Consensus 513 ~~~~~~t~~r~y~it----~~Qf~di~~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~lG~~~g~p 587 (646)
. +.+.|-+|+|- .+++.=+..-|++. . + ...-+..+++ +..|.+. .++++|...---
T Consensus 66 -G--Gsc~GvafRip~~~~~~v~~yL~~RE~~~-t--------~-----~y~p~~l~v~-~~~g~~~~al~~v~~~~h~q 127 (190)
T COG3703 66 -G--GSCEGVAYRIPEAHAEEVLEYLREREMNY-T--------L-----VYVPRWLPVE-LEGGRRVNALVFVGDRKHPQ 127 (190)
T ss_pred -C--CcEEEEEEEcCchhhHHHHHHHHHhhccc-c--------c-----eeeeEEEEEe-cCCCcEEEEEEEEecCCccc
Confidence 3 45999999999 67777777788731 1 0 1111121122 2233333 344554421110
Q ss_pred eEEEecCCc--ccccccCCCCCCCCCChhHHHHHHHhhhhc--CCCCHHHHHHHHHHh
Q 006415 588 ILTMTCSLS--AVGKFKSGEFPLRAPAPPYTNTLIKGLVEG--KQLSEEEAKAYIHEA 641 (646)
Q Consensus 588 ilT~T~~~~--~~~~~~~~~~~~~~Ps~~Yl~~l~~Gl~e~--~~~~~~~~~~Yl~~~ 641 (646)
+--+.. .+.+-....+-...|...||.-+++.|.+. ..-.-+++..+++..
T Consensus 128 ---yag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~hL~~~gi~d~~l~~l~~~v~~~ 182 (190)
T COG3703 128 ---YAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQHLRKLGIRDHNLEDLLELVAAL 182 (190)
T ss_pred ---cCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 111111 112223345566789999999999999988 233345556665543
No 14
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.048 Score=54.40 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=63.7
Q ss_pred eEEEEecCCccchh------hHHHHhhCCccCCCCCccCCCCCCCCcccccceeccceeeeeccCCCCcCCceeeEecCC
Q 006415 439 DVFYASFGSNMWKS------RFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPE 512 (646)
Q Consensus 439 ~vWYasyGSNm~~~------Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~ 512 (646)
-+|-+.|||=+|.. |+.|||.| -..|-+.||.|.+ |+.- ..|=||.|-|.
T Consensus 9 ~lWVFGYGSLiW~Pgf~y~~~~~gfI~G----y~RrF~q~s~dHR----------------Gtp~----~PGRv~TLi~~ 64 (212)
T KOG3182|consen 9 ALWVFGYGSLIWKPGFHYDESIPGFIKG----YKRRFWQGSTDHR----------------GTPE----HPGRVATLIPY 64 (212)
T ss_pred eEEEEeecceeecCCCCccccchhhhee----hhhheeccccccC----------------CCCC----CCceeEEeecC
Confidence 59999999999986 88899998 4455678887754 3332 24899999999
Q ss_pred CCCCcceeeeehhhchhhHHHHHHhhcCCC
Q 006415 513 CDCRHKAYLCLYRITLEQFNDVLLQENVYS 542 (646)
Q Consensus 513 ~~~~~~t~~r~y~it~~Qf~di~~QE~~~~ 542 (646)
.+.. +||++|+|.-+|-..++.=++.++
T Consensus 65 ~e~~--~wGvay~V~g~~~~~~l~yl~~RE 92 (212)
T KOG3182|consen 65 EEAI--TWGVAYRVRGKQASEVLEYLNVRE 92 (212)
T ss_pred Ccce--EeeEEEEecchhHHHHHHHHHHHh
Confidence 8855 999999999999999998888775
No 15
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=80.85 E-value=1 Score=44.76 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=26.2
Q ss_pred CceeeEecCCCCCCcceeeeehhhchhhHHHHHHh
Q 006415 503 PGGVAFLNPECDCRHKAYLCLYRITLEQFNDVLLQ 537 (646)
Q Consensus 503 ~GGvaF~~p~~~~~~~t~~r~y~it~~Qf~di~~Q 537 (646)
.|=|.-|++.++ +.++|.+|+|..++-.++++-
T Consensus 46 PGrvltL~~~~~--~~c~Gvayrv~~~~~~~~l~~ 78 (178)
T PF04752_consen 46 PGRVLTLDPGEE--GSCWGVAYRVPEEDAEEVLEY 78 (178)
T ss_pred CcceeeeeeCCC--CEEEEEEEEecCcCHHHHHHH
Confidence 477899999877 449999999999876665543
No 16
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=68.36 E-value=4.2 Score=38.66 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCCCCcceeee-----CcHHHHHHHHHhhCCcCCcceEEEEEeecccCCccc
Q 006415 148 EPDEAMGFCLY-----NNVAVAASFLLNERPELGINKILIVDWDVHHGNSTQ 194 (646)
Q Consensus 148 ~~~~a~GFC~f-----NnvAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq 194 (646)
..-.++|||++ .++-.|.+|+...+. -+|++-||||.-.=+|-|
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcc---cccceeeeccccchhhhh
Confidence 45678999987 356678888876554 279999999987767766
No 17
>COG3106 Predicted ATPase [General function prediction only]
Probab=66.22 E-value=4.2 Score=44.68 Aligned_cols=95 Identities=18% Similarity=0.334 Sum_probs=67.4
Q ss_pred CcCCceeeEecCCCCCCcceeeeehhhchhhHHHHHHhhcCCCCCCCCCCCCcchhhhhhccccccccccCCCcccceEE
Q 006415 500 TWGPGGVAFLNPECDCRHKAYLCLYRITLEQFNDVLLQENVYSDDVSSPLFDTNDLNSVANKKAVSLEALKNGWYHNVVY 579 (646)
Q Consensus 500 ~W~~GGvaF~~p~~~~~~~t~~r~y~it~~Qf~di~~QE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~ 579 (646)
.|- .-++-+||..++.+.|+.|+ ++-|.|-+.|=- .+. +.++.||++ |.
T Consensus 171 ~Wl-a~~~~ld~~a~AdE~~la~i----A~s~tdYL~aCK---------------------~~g--L~~iqPGRF---vl 219 (467)
T COG3106 171 KWL-AMAEGLDPSAPADENTLARI----AASFTDYLHACK---------------------ERG--LHFIQPGRF---VL 219 (467)
T ss_pred HHH-HHHhccCCCCCcChHHHHHH----HHHHHHHHHHHH---------------------hcc--ccccCCCce---ec
Confidence 576 77888999888887777765 456777666642 122 445778765 78
Q ss_pred eeeeCCcceEEEecCCcccccccCCCCCCCCCC-----------hhHHHHHHHhhhhc
Q 006415 580 LGKEHGIPILTMTCSLSAVGKFKSGEFPLRAPA-----------PPYTNTLIKGLVEG 626 (646)
Q Consensus 580 lG~~~g~pilT~T~~~~~~~~~~~~~~~~~~Ps-----------~~Yl~~l~~Gl~e~ 626 (646)
.|+++|-|.||| .||-++..+..+.....+++ ..|-++++||.-+.
T Consensus 220 PGdLeGaPALqF-fP~~~~~~~~~~~~~~~~k~gS~~aml~~Ry~~Y~~~VVK~Fyre 276 (467)
T COG3106 220 PGDLEGAPALQF-FPWPDVDAWLESKLAQADKQGSYAAMLERRYNYYKTKVVKGFYRE 276 (467)
T ss_pred CcccCCCcccee-cccccccccccccccccCccccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999999 58888877776666666776 45666667765443
No 18
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=56.08 E-value=71 Score=27.77 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=46.4
Q ss_pred EEecCCccchhhHHHHhhCCccCCCCCccCCCCCCCCcccccceeccceeeeeccCCCCcCCceeeEecCCCCCCcceee
Q 006415 442 YASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPECDCRHKAYL 521 (646)
Q Consensus 442 YasyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~~~~~~~t~~ 521 (646)
++.|||+|..+...-.+.- . .......+.++. ..+. ...|+...+-|..+.. .+.|
T Consensus 1 lFvYGTL~~~~~~~~~~~~--------------~-~~~~~~~~~~~~-~~~~-------~~~~~yP~l~~~~~~~-~V~G 56 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGR--------------P-GAKFIGEPATLG-GRYL-------YGGGGYPALVPGEGSG-RVEG 56 (102)
T ss_dssp EEESSTTSTTSTTGHHGTS--------------G-SSEEEEEEEEEE-EEEE-------ETTSSCEEEESCTTSS-EEEE
T ss_pred CEEECCCCCCCcChhhhhc--------------c-ceEEEEeeEEEE-eEEE-------eCCCCCCEEEEcCCCC-EEEE
Confidence 5789999999877744431 1 222333333333 1111 1126777777766631 6999
Q ss_pred eehhhchhhHHHHHHhhc
Q 006415 522 CLYRITLEQFNDVLLQEN 539 (646)
Q Consensus 522 r~y~it~~Qf~di~~QE~ 539 (646)
.+|.|+.+++..+..=|.
T Consensus 57 ~l~~v~~~~l~~LD~~E~ 74 (102)
T PF06094_consen 57 ELYEVDDEELARLDEYEG 74 (102)
T ss_dssp EEEEE-HHHHHHHHHHTT
T ss_pred EEEEECHHHHHhhHhhcC
Confidence 999999999988888874
No 19
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=55.07 E-value=17 Score=29.70 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=34.6
Q ss_pred ccccCCCCCCCCCChhHHHHHHHhhhhc--CCCCHHHHHHHHH
Q 006415 599 GKFKSGEFPLRAPAPPYTNTLIKGLVEG--KQLSEEEAKAYIH 639 (646)
Q Consensus 599 ~~~~~~~~~~~~Ps~~Yl~~l~~Gl~e~--~~~~~~~~~~Yl~ 639 (646)
..|-+|+-|.+.+-+.||++|....-|. .+|+..||..-|.
T Consensus 7 ~dw~tGDePmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId 49 (57)
T PF11272_consen 7 DDWVTGDEPMTGAQASYLKTLSEEAGEPFPDDLTKAEASERID 49 (57)
T ss_pred hhccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Confidence 3477899999999999999999888777 6889888876654
No 20
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=53.48 E-value=1.8e+02 Score=28.95 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHHhCCCEEEEecC
Q 006415 255 VWDHILLPVAKDFGPDIIIISAG 277 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaG 277 (646)
.+.+++..+.++|++|+|||-++
T Consensus 135 ~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 135 RMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHhhCCCCEEEEECC
Confidence 45666667777888899999776
No 21
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=40.99 E-value=5.1e+02 Score=30.72 Aligned_cols=164 Identities=21% Similarity=0.281 Sum_probs=96.7
Q ss_pred eeEEeeCCCCCCCCCC----CCcceeeeC--cHHHHHHHHHhhCCcCCcceEEEEEeecccCCccccccccCCceEEEec
Q 006415 135 SAFAIVRPPGHHAEPD----EAMGFCLYN--NVAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWKDPRVLFFSV 208 (646)
Q Consensus 135 ~afalvRPPGHHA~~~----~a~GFC~fN--nvAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~Dp~VL~iSi 208 (646)
++|-+. ||+--|... ...++|-++ +-+=+|...... |+. ..||+|.|-=|++..+|...|-=+-||.
T Consensus 293 fay~~g-~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d----~Id--ILvDl~g~T~d~r~~v~A~RpAPiqvsw 365 (620)
T COG3914 293 FAYSLG-PPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTD----GID--ILVDLDGHTVDTRCQVFAHRPAPIQVSW 365 (620)
T ss_pred EEEecC-CCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhc----CCe--EEEeccCceeccchhhhhcCCCceEEee
Confidence 344444 666444433 356899999 333333333332 332 4679999999999999999998888887
Q ss_pred ccCCCCCCCCCCCCCCCcc-ccCCCCccceEeeeCCCCCCCchhHHHHHHHhHHHH----HHHh--------------CC
Q 006415 209 HRHEFGTFYPANDDGFYTM-IGEGPGLGYNINVPWENGRCGDADYLAVWDHILLPV----AKDF--------------GP 269 (646)
Q Consensus 209 H~~~~g~fyPgt~~G~~~e-iG~g~G~G~~iNVPLp~g~~gD~~Yl~af~~vv~Pi----~~~F--------------~P 269 (646)
-+ ||+| +|.+.. .=-+ - ..-|| +. -..-|...+-++ |. .+.| .+
T Consensus 366 lG------y~aT-~g~p~~DY~I~--D--~y~vP--p~--ae~yysEkl~RL--p~cy~p~d~~~~v~p~~sR~~lglp~ 428 (620)
T COG3914 366 LG------YPAT-TGSPNMDYFIS--D--PYTVP--PT--AEEYYSEKLWRL--PQCYQPVDGFEPVTPPPSRAQLGLPE 428 (620)
T ss_pred cc------cccc-cCCCcceEEee--C--ceecC--ch--HHHHHHHHHHhc--ccccCCCCCcccCCCCcchhhcCCCC
Confidence 65 5666 242211 0000 0 12233 32 233444444332 20 0112 23
Q ss_pred CEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHHHHc
Q 006415 270 DIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNVLL 336 (646)
Q Consensus 270 dlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~~~~Ll 336 (646)
|.+|..|| -+..+.+++-|....+.|+.. .+.+++++.||-+ ..+.+.++.+.
T Consensus 429 ~avVf~c~--------~n~~K~~pev~~~wmqIL~~v-P~Svl~L~~~~~~-----~~~~~~l~~la 481 (620)
T COG3914 429 DAVVFCCF--------NNYFKITPEVFALWMQILSAV-PNSVLLLKAGGDD-----AEINARLRDLA 481 (620)
T ss_pred CeEEEEec--------CCcccCCHHHHHHHHHHHHhC-CCcEEEEecCCCc-----HHHHHHHHHHH
Confidence 66666666 345778999999999988886 4578889999955 33455566554
No 22
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.67 E-value=89 Score=30.13 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=37.9
Q ss_pred eeeCCCCCCCchhHHHHHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHH
Q 006415 239 NVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLM 304 (646)
Q Consensus 239 NVPLp~g~~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~ 304 (646)
|.-.+- .+-.+++..|+..+.+.+..++||+|+|..|. |....+.. ....+.+.|....+.+.
T Consensus 42 N~gi~G--~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~~~~ii 105 (193)
T cd01835 42 NLGVRG--DGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFGLNQLL 105 (193)
T ss_pred eecCCC--CCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCc-ccccCHHHHHHHHHHHH
Confidence 555432 34456677777666655555899999999999 55544211 22355666665444443
No 23
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=38.40 E-value=55 Score=30.96 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhcc
Q 006415 263 VAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFA 307 (646)
Q Consensus 263 i~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a 307 (646)
.+..++||+|++..|. |...+-+ ..-..+.|..+.+.+++..
T Consensus 45 ~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~ 87 (171)
T cd04502 45 LVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred hhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHC
Confidence 3456899999999999 7654332 2223455666666666643
No 24
>PHA03281 envelope glycoprotein E; Provisional
Probab=37.99 E-value=27 Score=40.28 Aligned_cols=80 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred EecCCccchhhHHHHhhCCccCCCCCccCCCCCC-CCcccccceeccceeeeeccCCCCcCCceeeEecCCC--------
Q 006415 443 ASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDR-NPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPEC-------- 513 (646)
Q Consensus 443 asyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~-~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~~-------- 513 (646)
+||+||++..|+. .|.|.+|+.. +.|.+ ++.--++..-..-.|..+||+|+--+.
T Consensus 427 CsFASP~ra~~Va-----------~R~Y~nCs~~~~wp~~-----C~sis~m~p~~gL~~~~n~vdL~F~nApasaSGLY 490 (642)
T PHA03281 427 CTFASPHIAQRVA-----------NTVYQNCEHADNYTAD-----CLAISHMEPGFGLEIHDGGSALKFVDAAESLSGLY 490 (642)
T ss_pred cccccchhHHHHH-----------HHHhcCCCCCCCCCCC-----CCcccccCccccccccCCCcceEeccCCcccCceE
Confidence 4799999999998 5566666553 22222 111112222112257777776665444
Q ss_pred ------CCCcceeeeehhhchhhHHHHHHhh
Q 006415 514 ------DCRHKAYLCLYRITLEQFNDVLLQE 538 (646)
Q Consensus 514 ------~~~~~t~~r~y~it~~Qf~di~~QE 538 (646)
+++-.+|+-.+.=|.+||..++.-=
T Consensus 491 VfVl~yNGHVeAWtYtlvSTad~fvNvV~d~ 521 (642)
T PHA03281 491 VFIIHFNGHVEAVAYTVVSTIDHFVNAIEEH 521 (642)
T ss_pred EEEEEECCeeeeeEEEEEehHHhhhhhehhc
Confidence 2334588889999999999987533
No 25
>PRK13236 nitrogenase reductase; Reviewed
Probab=37.96 E-value=35 Score=36.27 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhCCcCCcceEEEEEeecccCCcccccccc
Q 006415 161 VAVAASFLLNERPELGINKILIVDWDVHHGNSTQKMFWK 199 (646)
Q Consensus 161 vAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGTq~iF~~ 199 (646)
+|+-..+++.+. | +||++||.|.+++| |.-+|..
T Consensus 22 ~a~NLA~~La~~---G-~rVLliD~D~q~~~-~~~l~~~ 55 (296)
T PRK13236 22 TSQNTLAAMAEM---G-QRILIVGCDPKADS-TRLMLHS 55 (296)
T ss_pred HHHHHHHHHHHC---C-CcEEEEEccCCCCc-cchhccC
Confidence 344444444432 2 69999999999887 6655543
No 26
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=37.51 E-value=85 Score=29.64 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=34.2
Q ss_pred EeeeCCCCCCCchhHHHHHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhcc
Q 006415 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFA 307 (646)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a 307 (646)
+|..++- .+-.+++..+ .+.+..++||+|+|..|. |...+.+ ..-..+.|..+.+.++...
T Consensus 27 ~n~g~~G--~t~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~~---~~~~~~~~~~l~~~~~~~~ 88 (174)
T cd01841 27 NNLGIAG--ISSRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEVS---SNQFIKWYRDIIEQIREEF 88 (174)
T ss_pred Eeccccc--ccHHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCCC---HHHHHHHHHHHHHHHHHHC
Confidence 5666542 2333444443 344557899999999999 5544321 1122445556666665543
No 27
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.15 E-value=83 Score=30.20 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=32.9
Q ss_pred EeeeCCCCCCCchhHHHHHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHh
Q 006415 238 INVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMD 305 (646)
Q Consensus 238 iNVPLp~g~~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~ 305 (646)
+|+..+ | ..-.+++..++. +..++||+|+|..|. |.....+ ..-..+.|..+.+.++.
T Consensus 44 ~n~g~~-G-~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~~---~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKT-G-ATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLTS---IARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecC-C-cCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCCC---HHHHHHHHHHHHHHHHh
Confidence 365543 2 334556655544 457899999999998 5543221 11123455555555555
No 28
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=36.31 E-value=81 Score=34.58 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=45.4
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcch---HHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGS---ISNSVLA 330 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~---la~~~~~ 330 (646)
-+.+.|..+.++++|++|+|.... ....|| ++..+.+.+.+-.+.+++.+--.||..+. ...++.+
T Consensus 61 kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGd----------D~~~v~~~~~~~~~~~vi~v~~~gf~~~~~~G~~~a~~~ 130 (398)
T PF00148_consen 61 KLREAIKEIAEKYKPKAIFVVTSCVPEIIGD----------DIEAVARELQEEYGIPVIPVHTPGFSGSYSQGYDAALRA 130 (398)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEE-HHHHHTTT----------THHHHHHHHHHHHSSEEEEEE--TTSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCcEEEEECCCCHHHhCC----------CHHHHHHHhhcccCCcEEEEECCCccCCccchHHHHHHH
Confidence 345666777889999999987664 444444 45567777776545689999999994332 2344555
Q ss_pred HHHHHcC
Q 006415 331 CMNVLLE 337 (646)
Q Consensus 331 ~~~~Llg 337 (646)
+++.++.
T Consensus 131 l~~~~~~ 137 (398)
T PF00148_consen 131 LAEQLVK 137 (398)
T ss_dssp HHHHHTT
T ss_pred HHhhccc
Confidence 5555544
No 29
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.60 E-value=83 Score=29.17 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=24.5
Q ss_pred HHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhc
Q 006415 262 PVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDF 306 (646)
Q Consensus 262 Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~ 306 (646)
..+..++||+|+|+.|. |...+- ...-..+.|..+.+.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLNR---DPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccCC---CHHHHHHHHHHHHHHHHHh
Confidence 34567899999999998 443321 1111234455555555554
No 30
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=34.30 E-value=87 Score=29.42 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.0
Q ss_pred HHHHhCCCEEEEecCCC
Q 006415 263 VAKDFGPDIIIISAGFD 279 (646)
Q Consensus 263 i~~~F~PdlIvvsaGfD 279 (646)
.+..++||+|+|..|..
T Consensus 59 ~~~~~~pd~v~i~~G~N 75 (177)
T cd01822 59 LLAQHKPDLVILELGGN 75 (177)
T ss_pred HHHhcCCCEEEEeccCc
Confidence 34568999999999973
No 31
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.83 E-value=1.5e+02 Score=33.20 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=46.3
Q ss_pred HHHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHH
Q 006415 254 AVWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACM 332 (646)
Q Consensus 254 ~af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~~ 332 (646)
.-+.+.|.-+.+.++|++|+|..+. ....||. +..+.+.+.+-.+-+++.+--.||...+...++...+
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 3455666777889999988887765 4445553 3445555554334578888888998744444444444
Q ss_pred HHHc
Q 006415 333 NVLL 336 (646)
Q Consensus 333 ~~Ll 336 (646)
++|+
T Consensus 145 ~al~ 148 (426)
T cd01972 145 HGIL 148 (426)
T ss_pred HHHH
Confidence 4443
No 32
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.86 E-value=1.2e+02 Score=32.41 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=35.9
Q ss_pred HhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccC----hhhHHHHHHHHHhccCCc-EEEEeCC
Q 006415 258 HILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVT----PYGYSVMLKKLMDFAQGK-IVLALEG 317 (646)
Q Consensus 258 ~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt----~~gy~~l~~~l~~~a~gr-vv~vleG 317 (646)
+.|.+++++++||++|+ +|-|+...+.-.-..|. +.-|-+..+..+..-..+ =+++..|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 45788899999998776 89999976533223332 344555555555553222 3445555
No 33
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=32.69 E-value=1.4e+02 Score=32.86 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=45.4
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH----HH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS----VL 329 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~----~~ 329 (646)
.+.+.|.-+.+.++|++|+|..+. ....||. +..+.+.+..-.+.+++.+--.||...+...+ +.
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~ 143 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIAND 143 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHH
Confidence 455666777899999988876665 5555664 34455555433345788888888876333344 44
Q ss_pred HHHHHHcC
Q 006415 330 ACMNVLLE 337 (646)
Q Consensus 330 ~~~~~Llg 337 (646)
++++.|..
T Consensus 144 al~~~l~~ 151 (406)
T cd01967 144 AILDHLVG 151 (406)
T ss_pred HHHHHhcC
Confidence 44554544
No 34
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=32.38 E-value=2.2e+02 Score=32.00 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=44.0
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhc---cCCcEEEEeCCCCCcchHHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDF---AQGKIVLALEGGYNLGSISNSVLA 330 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~---a~grvv~vleGGY~~~~la~~~~~ 330 (646)
-+.+.|..+.+.|+|++|+|..+. ....||. +..+.+.+..- .+-+++.+--.||.. +...++..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 455666777899999987765554 5566664 34455555542 234688887888874 44455555
Q ss_pred HHHHHc
Q 006415 331 CMNVLL 336 (646)
Q Consensus 331 ~~~~Ll 336 (646)
.+++|+
T Consensus 140 a~~al~ 145 (429)
T cd03466 140 AVRSIV 145 (429)
T ss_pred HHHHHH
Confidence 555544
No 35
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=32.18 E-value=1.2e+02 Score=28.75 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.9
Q ss_pred HhCCCEEEEecCC-CC
Q 006415 266 DFGPDIIIISAGF-DA 280 (646)
Q Consensus 266 ~F~PdlIvvsaGf-Da 280 (646)
.++||+|||..|. |+
T Consensus 65 ~~~~d~vii~~G~ND~ 80 (185)
T cd01832 65 ALRPDLVTLLAGGNDI 80 (185)
T ss_pred hcCCCEEEEecccccc
Confidence 4799999999998 44
No 36
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=31.74 E-value=31 Score=31.66 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=24.9
Q ss_pred eeeCCCCCCCchhHHHHHHHhHHHHHHHhCCCEEEEecCC-CCCC
Q 006415 239 NVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAA 282 (646)
Q Consensus 239 NVPLp~g~~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGf-Da~~ 282 (646)
|.-.+- .+-.+++..+...+.. +...+||+|||+.|. |...
T Consensus 35 n~~~~G--~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~ 76 (179)
T PF13472_consen 35 NLGVSG--ATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLN 76 (179)
T ss_dssp EEE-TT---BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCT
T ss_pred EEeecC--ccHhHHHHHHHHHHhh-hccCCCCEEEEEcccccccc
Confidence 666542 3344556666665555 589999999999997 5544
No 37
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=30.81 E-value=3.4e+02 Score=28.69 Aligned_cols=61 Identities=11% Similarity=0.205 Sum_probs=41.6
Q ss_pred hHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhcc--CCcEEEEeCCCCCcc
Q 006415 251 DYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFA--QGKIVLALEGGYNLG 322 (646)
Q Consensus 251 ~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a--~grvv~vleGGY~~~ 322 (646)
+|...|++. +|-+..|+-..+||-.|=.+..+| .+..+.+.|..+. +.++|+|.+||....
T Consensus 1 ~~~~~~~~~-~~yi~~~~~~~~VIKlGG~ai~~~----------~l~~~~~~ia~l~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 1 QFVDWFREA-APYINAHRGKTFVIAFGGEAVAHP----------NFDNIVHDIALLHSLGIRLVLVHGARPQID 63 (280)
T ss_pred ChHHHHHHH-hHHHHHhCCCEEEEEEChHHhcCc----------hHHHHHHHHHHHHHCCCcEEEEeCCCHHHH
Confidence 477788776 788899999999999886666543 2222333333321 348999999988754
No 38
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=30.77 E-value=50 Score=33.18 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.8
Q ss_pred ceEEEEEeecccCC
Q 006415 178 NKILIVDWDVHHGN 191 (646)
Q Consensus 178 ~RVlIVD~DvHHGN 191 (646)
+||++||+|.++||
T Consensus 30 ~~VlliD~D~~~~~ 43 (251)
T TIGR01969 30 KKVLALDADITMAN 43 (251)
T ss_pred CeEEEEeCCCCCcc
Confidence 69999999999887
No 39
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.50 E-value=1e+02 Score=28.99 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.1
Q ss_pred HhCCCEEEEecCC-CC
Q 006415 266 DFGPDIIIISAGF-DA 280 (646)
Q Consensus 266 ~F~PdlIvvsaGf-Da 280 (646)
.++||+||++.|. |.
T Consensus 46 ~~~pd~vvl~~G~ND~ 61 (169)
T cd01828 46 ALQPKAIFIMIGINDL 61 (169)
T ss_pred ccCCCEEEEEeeccCC
Confidence 6799999999997 44
No 40
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=29.92 E-value=1.8e+02 Score=32.43 Aligned_cols=72 Identities=11% Similarity=0.196 Sum_probs=45.7
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMN 333 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~~~ 333 (646)
.+++.|.-+.+.|+|++|+|.+.. -...||. ...+.+.+.+-.+-+++.+---||.. ....+..+.++
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDD----------i~~v~~~~~~~~~~pVi~v~tpgf~g-~~~~G~~~~~~ 139 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMD----------LEGLAERLSTNFGVPVLFAPASGLDY-TFTQGEDTVLA 139 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHHHHhh----------HHHHHHHHHHhhCCCEEEeeCCCccc-cHHHHHHHHHH
Confidence 456666777899999999997765 4444553 33344444432345788888888864 33355556666
Q ss_pred HHcC
Q 006415 334 VLLE 337 (646)
Q Consensus 334 ~Llg 337 (646)
++.+
T Consensus 140 alv~ 143 (407)
T TIGR01279 140 ALVP 143 (407)
T ss_pred HHHH
Confidence 6554
No 41
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=28.46 E-value=1.2e+02 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=19.6
Q ss_pred hhHHHHHHHhHHHHHHHhCCCEEEEecCC-CCCC
Q 006415 250 ADYLAVWDHILLPVAKDFGPDIIIISAGF-DAAA 282 (646)
Q Consensus 250 ~~Yl~af~~vv~Pi~~~F~PdlIvvsaGf-Da~~ 282 (646)
.+++..++.. +...+||+|+++.|. |...
T Consensus 45 ~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~ 74 (183)
T cd04501 45 SQMLVRFYED----VIALKPAVVIIMGGTNDIIV 74 (183)
T ss_pred HHHHHHHHHH----HHhcCCCEEEEEeccCcccc
Confidence 4555555443 356799999999998 5443
No 42
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=27.51 E-value=50 Score=32.51 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=20.1
Q ss_pred CCChhHHHHHHHHHHHHhcccchhhc
Q 006415 348 YPFESTWRVIQAVRKKLSAFWPTLAD 373 (646)
Q Consensus 348 ~p~~~~~~~i~~~~~~~~~~w~~l~~ 373 (646)
.++.++.++++++++.+++||+||.+
T Consensus 9 ~~~~~a~~~v~~v~~~qs~yw~~l~~ 34 (178)
T PF09757_consen 9 VASPSAFETVKNVRRIQSKYWKCLNP 34 (178)
T ss_dssp ---HHHHHHHHHHHHHHTTT-GGGTS
T ss_pred CCCHHHeeeHHHHHHHHHHHHHHhcC
Confidence 45778899999999999999999953
No 43
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=27.07 E-value=2.1e+02 Score=32.39 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHH----HH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNS----VL 329 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~----~~ 329 (646)
-+.+.|..+.++|+|++|+|.+.. ....||.+ ..+.+.+..-.+-+++.+--.||... ...+ +.
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~e~~~~~~~~vi~v~t~gf~g~-~~~G~~~a~~ 176 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCKAAAEKTGIPVIPVDSEGFYGS-KNLGNKLACD 176 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHHHHHHHhCCCEEEEECCCCccc-hhHHHHHHHH
Confidence 345556677889999988776654 55566644 33555554433457888878888653 3333 34
Q ss_pred HHHHHHcC
Q 006415 330 ACMNVLLE 337 (646)
Q Consensus 330 ~~~~~Llg 337 (646)
+++..+.+
T Consensus 177 al~~~~~~ 184 (456)
T TIGR01283 177 ALLKHVIG 184 (456)
T ss_pred HHHHHHhc
Confidence 44554544
No 44
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=26.58 E-value=2.2e+02 Score=32.33 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=43.0
Q ss_pred HHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhc----cCCcEEEEeCCCCCcchHHHHHHH
Q 006415 256 WDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDF----AQGKIVLALEGGYNLGSISNSVLA 330 (646)
Q Consensus 256 f~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~----a~grvv~vleGGY~~~~la~~~~~ 330 (646)
+.+.|..+.+.|+|++|+|.++. ....||.+ ..+.+.+..- .+.+++.+--.||.. +...++..
T Consensus 80 L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~~ 148 (455)
T PRK14476 80 VEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWAA 148 (455)
T ss_pred HHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHHH
Confidence 44555666788999999776665 66677743 3344444432 234788888899975 34445444
Q ss_pred HHHHH
Q 006415 331 CMNVL 335 (646)
Q Consensus 331 ~~~~L 335 (646)
.+.+|
T Consensus 149 a~~al 153 (455)
T PRK14476 149 AVEAI 153 (455)
T ss_pred HHHHH
Confidence 44443
No 45
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=25.96 E-value=45 Score=32.60 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=36.7
Q ss_pred HHHHHhHHHHHHH--hCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeC
Q 006415 254 AVWDHILLPVAKD--FGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALE 316 (646)
Q Consensus 254 ~af~~vv~Pi~~~--F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vle 316 (646)
..|+.+.+|+++. -++|+||+ |-+|.|.+...+|.+....+.+ .+-++++++-
T Consensus 79 e~fe~~~~~~L~~~~~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~-s~~~vi~vv~ 133 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSDLIVI---------DEIGKMELKSPGFREAVEKLLD-SNKPVIGVVH 133 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCHEEEE------------STTCCC-CHHHHHHHHHHC-TTSEEEEE--
T ss_pred HHHHHHHHHHHHhhcCCCCEEEE---------eccchhhhcCHHHHHHHHHHHc-CCCcEEEEEe
Confidence 4466665666665 58999999 9999999999999999988888 3445666653
No 46
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=25.32 E-value=3e+02 Score=31.10 Aligned_cols=70 Identities=7% Similarity=0.128 Sum_probs=43.4
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhc----cCCcEEEEeCCCCCcchHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDF----AQGKIVLALEGGYNLGSISNSVL 329 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~----a~grvv~vleGGY~~~~la~~~~ 329 (646)
-+.+.|..+.+.|+|++|+|.++. ....||.+. .+.+.+.+- .+-+++.+--.||... ...++.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~----------~v~~~~~~e~p~~~~~pvi~v~tpgf~g~-~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIA----------RVVRQFREKHPQHKGTAVVTVNTPDFKGS-LEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCHH----------HHHHHHHhhcccccCCeEEEecCCCcCCc-hHHHHH
Confidence 345556667889999988887665 556677443 344444432 2347888889999863 344444
Q ss_pred HHHHHH
Q 006415 330 ACMNVL 335 (646)
Q Consensus 330 ~~~~~L 335 (646)
..+++|
T Consensus 147 ~a~~al 152 (432)
T TIGR01285 147 AAVESI 152 (432)
T ss_pred HHHHHH
Confidence 444443
No 47
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=24.46 E-value=3.4e+02 Score=30.92 Aligned_cols=70 Identities=9% Similarity=0.129 Sum_probs=43.4
Q ss_pred HHHhHHHHHHHh-CCCEE-EEecCCCCCCCCCCCCcccChhhHHHHHHHHHhc--------cCCcEEEEeCCCCCcchHH
Q 006415 256 WDHILLPVAKDF-GPDII-IISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDF--------AQGKIVLALEGGYNLGSIS 325 (646)
Q Consensus 256 f~~vv~Pi~~~F-~PdlI-vvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~--------a~grvv~vleGGY~~~~la 325 (646)
+++.|..+.+.| +|++| |++++.....||.+ ..+.+.+.+- ...+++.+--+||... ..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi----------~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs-~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDV----------DGLISKLNEELLKEKFPDREVHLIPIHTPSFVGS-MI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCH----------HHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc-HH
Confidence 556667778899 59987 55555677777754 3344444321 1236888888999763 44
Q ss_pred HHHHHHHHHHc
Q 006415 326 NSVLACMNVLL 336 (646)
Q Consensus 326 ~~~~~~~~~Ll 336 (646)
.++...+.+|+
T Consensus 149 ~Gy~~a~~ali 159 (461)
T TIGR02931 149 TGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 48
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=23.21 E-value=3.1e+02 Score=29.78 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHHH
Q 006415 256 WDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNV 334 (646)
Q Consensus 256 f~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~~~~ 334 (646)
+.+.+..+++.++|++|+|..+. ....||. +..+.+.+....+.+++.+-..||. .....++...+++
T Consensus 68 l~~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~~~~~~~~~~vv~~~~~gf~-~~~~~G~~~a~~~ 136 (399)
T cd00316 68 LLEAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAKEASKEIGIPVVPASTPGFR-GSQSAGYDAAVKA 136 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHHHHHHhhCCceEEeeCCCCc-ccHHHHHHHHHHH
Confidence 34445666789999998887665 4445553 4445666654445688888889998 4444444444444
Q ss_pred H
Q 006415 335 L 335 (646)
Q Consensus 335 L 335 (646)
+
T Consensus 137 ~ 137 (399)
T cd00316 137 I 137 (399)
T ss_pred H
Confidence 3
No 49
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=22.59 E-value=2.4e+02 Score=30.41 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=35.0
Q ss_pred HhHHHHHHHhCCCEEEEecCCCCCCCCCCCCccc----ChhhHHHHHHHHHhccCCc-EEEEeCC
Q 006415 258 HILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRV----TPYGYSVMLKKLMDFAQGK-IVLALEG 317 (646)
Q Consensus 258 ~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~l----t~~gy~~l~~~l~~~a~gr-vv~vleG 317 (646)
+.|..++++++||++|+ +|-|+...+.-.-..| .+.-|-+..+.++..-..+ -+++..|
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 45778899999998776 8999987664222222 2234445555555543222 3444455
No 50
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.57 E-value=23 Score=40.11 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=46.7
Q ss_pred EecCCccchhhHHHHhhCCccCCCCCccCCCCCCCCcccccceeccceeeeeccCCCCcCCceeeEecCCC---------
Q 006415 443 ASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHHLFFGHDSSHTWGPGGVAFLNPEC--------- 513 (646)
Q Consensus 443 asyGSNm~~~Rf~cYi~GG~~~G~~~~~~G~~d~~~P~~~~~~~~p~~lyFa~~s~~~W~~GGvaF~~p~~--------- 513 (646)
.+||||++.+|+. .|.|.+|+....|. ..++..++.....-.|..++|.|.--+.
T Consensus 222 C~f~s~~~a~~~~-----------~~~y~~C~~~~~~~-----~C~~~~~~~~~~~~~~~~~~~~l~f~~a~~~~sGLYv 285 (439)
T PF02480_consen 222 CSFASPLRAERLA-----------SRRYANCSPSGWPR-----RCPSTSHIEPVPGLRWASNGVDLQFTNAPESASGLYV 285 (439)
T ss_dssp GEES----SS-SE-----------EEEEEEEBTTC-TT-----TTEEEEEE---TTEEE-TTSSSEEESS--GGG-EEEE
T ss_pred ceeecchhHHHHH-----------HHhhcCCCCCCCcC-----CCCchhccCcCccccccCCCcceEecCCCcccCceEE
Confidence 4799999999997 78999997765333 3578888887777778888887766554
Q ss_pred -----CCCcceeeeehhhchhhHHHHH
Q 006415 514 -----DCRHKAYLCLYRITLEQFNDVL 535 (646)
Q Consensus 514 -----~~~~~t~~r~y~it~~Qf~di~ 535 (646)
|++-.+|+-.++-|.+||-.++
T Consensus 286 ~V~~~nghv~aW~yt~vST~~~~~nvv 312 (439)
T PF02480_consen 286 FVVYYNGHVEAWTYTLVSTADQFVNVV 312 (439)
T ss_dssp EEEEETTEEEEEEEEEEE-TTT--EEE
T ss_pred EEEEECCeeeeeEEEEEEecccccceE
Confidence 3333488889999999987654
No 51
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=22.44 E-value=2.4e+02 Score=31.64 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=51.0
Q ss_pred HHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHH
Q 006415 252 YLAVWDHILLPVAKDFGPDIIIISAGFDAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLAC 331 (646)
Q Consensus 252 Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~ 331 (646)
|...|.+. +|-+..|+=+.+||=.|=.+..++.+ ..+..-...+... +.++|+|.+||+..+...
T Consensus 1 ~~~~~~~~-~~~i~~~~~~~~ViK~GG~~~~~~~~-------~~~~~~i~~l~~~-g~~~vlVHGgg~~i~~~~------ 65 (429)
T TIGR01890 1 FVAWFREA-APYINAHRGKTFVVGLGGELVEGGNL-------GNIVADIALLHSL-GVRLVLVHGARPQIERIL------ 65 (429)
T ss_pred ChhHHhhh-hHHHHHhCCCEEEEEEChhhccCccH-------HHHHHHHHHHHHC-CCcEEEEcCCCHHHHHHH------
Confidence 45566665 78889999999999877555433211 1222222233333 347999999996643221
Q ss_pred HHHHcCCCCCCCCCCCCCChhHHHHHHHH
Q 006415 332 MNVLLEDKPVAGSSEAYPFESTWRVIQAV 360 (646)
Q Consensus 332 ~~~Llg~~~~~~~~~~~p~~~~~~~i~~~ 360 (646)
. -+|-++......+...+++.+.++.+
T Consensus 66 -~-~~g~~~~~~~G~RvT~~~~l~~~~~~ 92 (429)
T TIGR01890 66 -A-ARGRTPHYHRGLRVTDEASLEQAQQA 92 (429)
T ss_pred -H-HcCCCceeeCCcccCCHHHHHHHHHH
Confidence 1 23433322223344555666655544
No 52
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.31 E-value=3.6e+02 Score=30.11 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=42.9
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHh----ccCCcEEEEeCCCCCcchHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMD----FAQGKIVLALEGGYNLGSISNSVL 329 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~----~a~grvv~vleGGY~~~~la~~~~ 329 (646)
-+.+.|..+.+.++|++|+|.... ....||. +..+.+.+.. ..+-+++.+--.||... ...++.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-~~~G~~ 136 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDD----------VAGFIKEFRAEGPEPADFPVVYASTPSFKGS-HETGYD 136 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCC----------HHHHHHHHHhhccCCCCCeEEEeeCCCCCCc-HHHHHH
Confidence 344556667788999987765554 5666664 3445555554 23457888888888853 334444
Q ss_pred HHHHHH
Q 006415 330 ACMNVL 335 (646)
Q Consensus 330 ~~~~~L 335 (646)
..+++|
T Consensus 137 ~a~~al 142 (428)
T cd01965 137 NAVKAI 142 (428)
T ss_pred HHHHHH
Confidence 444444
No 53
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.68 E-value=3.2e+02 Score=30.31 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcch---HHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGS---ISNSVLA 330 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~---la~~~~~ 330 (646)
.+.+.|..+.+.|+|++|+|.... ....||. +..+.+.+..-.+.+++.+--.||.... ...++.+
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~ 142 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDD----------IDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEA 142 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHHHH
Confidence 345556677888999988776554 5555653 4445555554335578888777776532 2233445
Q ss_pred HHHHHcC
Q 006415 331 CMNVLLE 337 (646)
Q Consensus 331 ~~~~Llg 337 (646)
+++.+..
T Consensus 143 l~~~l~~ 149 (410)
T cd01968 143 LLDHVIG 149 (410)
T ss_pred HHHHhcC
Confidence 5555544
No 54
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=21.64 E-value=1.3e+02 Score=30.13 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=55.0
Q ss_pred cHH-HHHHHHHhhCCcCCcceEEEEEeecccC-Ccc--ccccccCCceEEEecccCCCCCCCCCCCCCCCccccCCCCcc
Q 006415 160 NVA-VAASFLLNERPELGINKILIVDWDVHHG-NST--QKMFWKDPRVLFFSVHRHEFGTFYPANDDGFYTMIGEGPGLG 235 (646)
Q Consensus 160 nvA-IAA~~l~~~~~~~g~~RVlIVD~DvHHG-NGT--q~iF~~Dp~VL~iSiH~~~~g~fyPgt~~G~~~eiG~g~G~G 235 (646)
||. +|+.++.++ .++++|..||-|-++- .|. .-.+.++.+.+.-.+ .+|=. ++.+
T Consensus 10 ~Vg~la~d~Li~~---l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~------~iy~~------------~~~~ 68 (219)
T PF09754_consen 10 NVGQLAVDHLIES---LNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPL------EIYYS------------EDSK 68 (219)
T ss_dssp GHHHHHHHHHHHH---SCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SE------EEEEE------------ECTT
T ss_pred hHHHHHHHHHHHh---CCCEEEEEEeccccCCCccCCCeEEeccccceeccce------EEEEE------------CCCC
Confidence 555 788999885 5799999999955443 222 111111101111111 12211 1111
Q ss_pred ceE---eeeCCCCCCCchhHHHHHHHhHHHHHHHhCCCEEEEecCCCCCCCC
Q 006415 236 YNI---NVPWENGRCGDADYLAVWDHILLPVAKDFGPDIIIISAGFDAAAGD 284 (646)
Q Consensus 236 ~~i---NVPLp~g~~gD~~Yl~af~~vv~Pi~~~F~PdlIvvsaGfDa~~~D 284 (646)
..+ ++|.+++ +...|-+.|+..+++++..-||+-.|+++....
T Consensus 69 i~vl~~~~p~~~~------~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~ 114 (219)
T PF09754_consen 69 ILVLQGRSPIPPG------RWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPH 114 (219)
T ss_dssp EEEEEESSE--SC------GHHHHHHHHHHHHHHTTECEEEEEEEEEESS-T
T ss_pred EEEEEecCCCCch------HHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCc
Confidence 222 4476654 445566667899999999999999999998865
No 55
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=21.60 E-value=2.8e+02 Score=30.70 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=46.2
Q ss_pred HHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcchHHHHHHHHHHH
Q 006415 256 WDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLGSISNSVLACMNV 334 (646)
Q Consensus 256 f~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~~la~~~~~~~~~ 334 (646)
+++.|.-+.+.|+|++|+|.+.. -...||.+ ..+.+.+..-.+-+++.+--.||.. +...++...+++
T Consensus 75 L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi----------~~v~~~~~~~~~~pvi~v~t~gf~g-~~~~G~~~~~~a 143 (396)
T cd01979 75 LDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL----------EGAAPRLSAEIGVPILVASASGLDY-TFTQGEDTVLAA 143 (396)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH----------HHHHHHHhhcCCCcEEEeeCCCccc-cHHHHHHHHHHH
Confidence 44556777899999998886664 55555543 3455555433345788888888864 344666777776
Q ss_pred HcC
Q 006415 335 LLE 337 (646)
Q Consensus 335 Llg 337 (646)
|.+
T Consensus 144 lv~ 146 (396)
T cd01979 144 LVP 146 (396)
T ss_pred Hhh
Confidence 664
No 56
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.55 E-value=3.3e+02 Score=30.65 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhcc----CCcEEEEeCCCCCcchHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFA----QGKIVLALEGGYNLGSISNSVL 329 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a----~grvv~vleGGY~~~~la~~~~ 329 (646)
-+.+.|.-+.++|+|++|+|..+. ....||.+ ..+.+.+..-. +-+++.+--.||.. +...++.
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi----------~~v~~~~~~~~~~~~~~~vi~v~tpgf~g-s~~~G~~ 140 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDL----------NAFIKNAKNKGSIPADFPVPFANTPSFVG-SHITGYD 140 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhhhhccH----------HHHHHHHHHhccCCCCCeEEEecCCCCcc-CHHHHHH
Confidence 345566677899999987776554 55566643 33444444321 34677777778875 3445555
Q ss_pred HHHHHHc
Q 006415 330 ACMNVLL 336 (646)
Q Consensus 330 ~~~~~Ll 336 (646)
..+++|+
T Consensus 141 ~a~~al~ 147 (435)
T cd01974 141 NMVKGIL 147 (435)
T ss_pred HHHHHHH
Confidence 5555554
No 57
>PRK10818 cell division inhibitor MinD; Provisional
Probab=21.49 E-value=95 Score=31.95 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.6
Q ss_pred ceEEEEEeecccCCcc
Q 006415 178 NKILIVDWDVHHGNST 193 (646)
Q Consensus 178 ~RVlIVD~DvHHGNGT 193 (646)
+||++||+|.+.||-+
T Consensus 32 ~~vllvD~D~~~~~~~ 47 (270)
T PRK10818 32 KKTVVIDFDIGLRNLD 47 (270)
T ss_pred CeEEEEECCCCCCChh
Confidence 6999999999888743
No 58
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.74 E-value=3e+02 Score=31.53 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=44.3
Q ss_pred HHHHhHHHHHHHhCCCEEEEecCC-CCCCCCCCCCcccChhhHHHHHHHHHhccCCcEEEEeCCCCCcc---hHHHHHHH
Q 006415 255 VWDHILLPVAKDFGPDIIIISAGF-DAAAGDPLGGCRVTPYGYSVMLKKLMDFAQGKIVLALEGGYNLG---SISNSVLA 330 (646)
Q Consensus 255 af~~vv~Pi~~~F~PdlIvvsaGf-Da~~~DpLG~~~lt~~gy~~l~~~l~~~a~grvv~vleGGY~~~---~la~~~~~ 330 (646)
-+.+.|..+.+.|+|++|+|.... ....||. +..+.+.+..-.+-+++.+--.||... -...++.+
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdD----------i~~v~~~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a~~a 175 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDD----------IDAVCKRAAEKFGIPVIPVNSPGFVGNKNLGNKLAGEA 175 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccC----------HHHHHHHHHHhhCCCEEEEECCCcccchhhhHHHHHHH
Confidence 344556667788999998776654 5555553 344555554333457888877777652 12334555
Q ss_pred HHHHHcC
Q 006415 331 CMNVLLE 337 (646)
Q Consensus 331 ~~~~Llg 337 (646)
++..|.+
T Consensus 176 l~~~l~~ 182 (475)
T PRK14478 176 LLDHVIG 182 (475)
T ss_pred HHHHHhc
Confidence 6666654
No 59
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=20.73 E-value=1.2e+02 Score=31.43 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=13.1
Q ss_pred ceEEEEEeecccCCcccc
Q 006415 178 NKILIVDWDVHHGNSTQK 195 (646)
Q Consensus 178 ~RVlIVD~DvHHGNGTq~ 195 (646)
+||++||.|.+ ||.|..
T Consensus 29 ~~VlliD~D~q-~~~~~~ 45 (275)
T TIGR01287 29 KKVMIVGCDPK-ADSTRL 45 (275)
T ss_pred CeEEEEeCCCC-CCcccc
Confidence 69999999998 444543
No 60
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=20.36 E-value=6.6e+02 Score=25.71 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHHcCCCCcceEecCCCCCHHHHhccCCHHHHHHHHH-hcccchhhhhhhhccccCceecccChHHHHH
Q 006415 37 NPNRIKAIWNKLQAAGIPQRCVVLNAKEAKDKNLLSVHTENHVNLIKN-ISSKQFDSRRDRIASKLNSIYLNEGSSEAAY 115 (646)
Q Consensus 37 ~P~Rl~~i~~~L~~~gl~~~~~~~~p~~A~~~eL~~VHs~~YI~~l~~-~~~~~~~~~~~~~~~~~~~~y~~~~s~eaA~ 115 (646)
+++-++.+.+.|+..+. ..+++|-..+... .....+++++.+++ +.+. ...+.|+.+|+.+
T Consensus 71 ~~~~v~~i~~~l~~~~~---~vV~DPVm~~~~g-~~~~~~~~~~~~~~~Llp~--------------AdiitPN~~Ea~~ 132 (246)
T PF08543_consen 71 SAEQVEIIADFLKKPKI---PVVLDPVMGDSGG-YYYVDPDVVEAMREELLPL--------------ADIITPNLTEAEL 132 (246)
T ss_dssp SHHHHHHHHHHHHHTTT---EEEEE---EETTT-ECTSSHHHHHHHHHHCGGG---------------SEEE-BHHHHHH
T ss_pred CchhhhhHHHHHhccCC---CEEEecccccCCC-CcCCCHHHHHHHHhccCCc--------------CeEEeCCHHHHHH
Confidence 45556666666654332 3455666554333 34567777777765 3221 1245678888886
Q ss_pred HHHhHHHHHHHHHHccccceeEEeeCCCCCCCCCCCCcceeeeCcHHHHHHHHHhhCCcCCcceEEEEEeecccCCcc-c
Q 006415 116 LAAGSVIEVAERVAEGELNSAFAIVRPPGHHAEPDEAMGFCLYNNVAVAASFLLNERPELGINKILIVDWDVHHGNST-Q 194 (646)
Q Consensus 116 lAaG~~l~aad~v~~g~~~~afalvRPPGHHA~~~~a~GFC~fNnvAIAA~~l~~~~~~~g~~RVlIVD~DvHHGNGT-q 194 (646)
++- . ++. -.+++--+++.+.+ .|.+.|+|=-......++. .
T Consensus 133 L~g-~-----------~i~----------------------~~~~~~~~~~~l~~----~G~~~VvItg~~~~~~~~~~~ 174 (246)
T PF08543_consen 133 LTG-R-----------EIN----------------------SEEDIEEAAKALLA----LGPKNVVITGGHLDGDEGIIT 174 (246)
T ss_dssp HHT-S-------------S----------------------SHHHHHHHHHHHHH----TS-SEEEEEEEEGGSSCEEEE
T ss_pred HhC-C-----------CCC----------------------ChHhHHHHHHHHHH----hCCceEEEeeecccccccccc
Confidence 652 1 000 11244455666655 3788898865544234443 5
Q ss_pred cccccCCceEEEecccCC
Q 006415 195 KMFWKDPRVLFFSVHRHE 212 (646)
Q Consensus 195 ~iF~~Dp~VL~iSiH~~~ 212 (646)
..++++.++..++.++.+
T Consensus 175 ~~l~~~~~~~~~~~~~~~ 192 (246)
T PF08543_consen 175 DVLYDGGEFYWLSSPRIP 192 (246)
T ss_dssp EEEETTSEEEEEEEEEEC
T ss_pred ceeeeccceeecceeEEc
Confidence 777777777777766543
No 61
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.11 E-value=44 Score=27.89 Aligned_cols=10 Identities=50% Similarity=1.026 Sum_probs=7.7
Q ss_pred cceeeeCcHH
Q 006415 153 MGFCLYNNVA 162 (646)
Q Consensus 153 ~GFC~fNnvA 162 (646)
--||||||=-
T Consensus 16 TKFcYyNNy~ 25 (63)
T PF02701_consen 16 TKFCYYNNYN 25 (63)
T ss_pred CEEEeecCCC
Confidence 4699999953
Done!