Query 006419
Match_columns 646
No_of_seqs 375 out of 1198
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 22:59:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 1E-144 3E-149 1191.4 42.4 579 7-627 1-620 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 4.8E-89 1E-93 766.7 24.7 316 80-613 522-843 (1080)
3 smart00128 IPPc Inositol polyp 100.0 6.7E-76 1.4E-80 615.2 27.2 225 374-607 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 7.7E-64 1.7E-68 532.4 18.9 314 80-610 15-335 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 1.8E-30 3.9E-35 266.3 10.5 173 417-599 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 1.3E-28 2.8E-33 231.3 10.7 142 375-517 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.7 3.3E-18 7.1E-23 176.6 4.4 166 417-601 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.5 3.1E-06 6.6E-11 88.8 14.6 148 415-598 116-282 (283)
9 PRK05421 hypothetical protein; 98.3 6.4E-06 1.4E-10 85.0 13.6 126 420-601 135-261 (263)
10 PF03372 Exo_endo_phos: Endonu 98.1 5.8E-07 1.3E-11 86.0 -0.8 97 385-497 72-172 (249)
11 COG3568 ElsH Metal-dependent h 97.7 0.00021 4.5E-09 74.6 10.2 55 420-491 119-174 (259)
12 PRK11756 exonuclease III; Prov 97.5 0.00062 1.3E-08 69.9 10.1 63 420-492 89-154 (268)
13 TIGR00633 xth exodeoxyribonucl 97.4 0.0015 3.2E-08 65.6 11.3 34 103-140 2-36 (255)
14 PTZ00297 pantothenate kinase; 97.0 0.0038 8.2E-08 78.6 11.5 69 418-492 131-206 (1452)
15 COG3021 Uncharacterized protei 95.9 0.034 7.3E-07 59.6 9.2 132 418-601 173-307 (309)
16 PLN03144 Carbon catabolite rep 95.7 0.04 8.8E-07 64.0 9.2 62 433-509 418-480 (606)
17 TIGR00195 exoDNase_III exodeox 94.8 0.15 3.2E-06 52.0 9.3 34 103-140 2-35 (254)
18 PRK13911 exodeoxyribonuclease 94.7 0.28 6.1E-06 50.9 11.2 35 103-140 2-36 (250)
19 PF14529 Exo_endo_phos_2: Endo 93.7 0.075 1.6E-06 47.0 3.8 33 564-596 86-119 (119)
20 smart00476 DNaseIc deoxyribonu 93.6 0.14 3E-06 54.2 6.3 44 433-492 143-187 (276)
21 KOG3873 Sphingomyelinase famil 93.3 0.39 8.4E-06 52.7 9.1 197 380-603 74-294 (422)
22 PRK13911 exodeoxyribonuclease 92.8 0.047 1E-06 56.6 1.2 53 424-492 91-147 (250)
23 COG0708 XthA Exonuclease III [ 91.0 0.044 9.5E-07 57.6 -1.3 33 103-140 2-35 (261)
24 KOG2756 Predicted Mg2+-depende 90.2 0.63 1.4E-05 49.4 6.3 64 422-495 194-257 (349)
25 KOG2338 Transcriptional effect 83.5 1.7 3.8E-05 49.3 5.4 94 389-492 204-303 (495)
26 PRK11756 exonuclease III; Prov 78.4 0.58 1.3E-05 48.1 -0.4 34 103-140 2-35 (268)
27 TIGR00633 xth exodeoxyribonucl 72.7 1.5 3.2E-05 44.1 0.7 53 432-494 100-154 (255)
28 TIGR00195 exoDNase_III exodeox 68.6 1.8 3.8E-05 44.1 0.3 52 433-494 98-151 (254)
29 PRK15251 cytolethal distending 65.7 5.3 0.00012 42.5 3.1 55 419-492 141-195 (271)
30 PRK15251 cytolethal distending 65.0 12 0.00026 39.9 5.6 38 102-141 25-66 (271)
31 PF03372 Exo_endo_phos: Endonu 62.6 2.1 4.5E-05 40.9 -0.6 33 105-140 1-38 (249)
32 PRK05421 hypothetical protein; 57.7 5.9 0.00013 41.1 1.8 35 102-140 44-78 (263)
33 cd01251 PH_centaurin_alpha Cen 28.1 43 0.00093 30.1 2.2 34 136-170 69-102 (103)
34 TIGR02616 tnaC_leader tryptoph 25.3 15 0.00033 26.0 -0.9 16 23-38 6-21 (26)
35 PF08053 Tna_leader: Tryptopha 23.4 15 0.00033 24.9 -1.1 14 23-36 8-21 (24)
36 PF07494 Reg_prop: Two compone 23.1 36 0.00078 23.0 0.6 8 101-108 17-24 (24)
37 KOG3870 Uncharacterized conser 20.8 41 0.00089 37.9 0.7 50 479-546 350-399 (434)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.4e-144 Score=1191.39 Aligned_cols=579 Identities=46% Similarity=0.824 Sum_probs=475.8
Q ss_pred cccccCCCCCccchHHHHHhhhcccCCCCCCCCCCCCCCCCCCcchhhhhhcccc-----ccc--------ccccccCC-
Q 006419 7 TQRSKHHQPELFWPRVVMRKWLNISTKDSDFSADTDEDDIDGDSDTEEFAQSQFR-----VPK--------EEEAQYDP- 72 (646)
Q Consensus 7 m~~~~~~~~~~~Wp~~v~~Kwlni~~~~~df~aD~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~- 72 (646)
||.+++|++|+||||+||||||||++|++|||||+.+++.++|+|.+++...+.. ... ++.+.-.+
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 8889999999999999999999999999999999988755556665554433211 000 11111011
Q ss_pred CCCCCChhhHhhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeeCCCCcccccC
Q 006419 73 NGTSETFPRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEIVPLTAGNIFGAE 152 (646)
Q Consensus 73 ~~~~~~~~~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEiV~Lna~~vl~~~ 152 (646)
..++++.+++|||++|++|+|||+++++|||||||||||+.|+.+++|.+||..++|||||||||||||||||+|||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 23456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCc
Q 006419 153 DSRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKP 232 (646)
Q Consensus 153 d~~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (646)
++.|+++|+.+|+++||+..+..+++||||+||||++ .+++ +++|++.|+|+ ||+++.+..|....+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~-~~~~----~~~e~~~~~d~------~~~~~~~~~~~~~~~-- 227 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVL-RTSI----VADELAEEVDS------LPLEMMNNEFIDAAT-- 227 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCccc-CCcc----hhhhhhhhccc------Chhhhcccccccccc--
Confidence 9999999999999999999999999999999999998 5555 78999999876 666665543211111
Q ss_pred ccccccccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCC
Q 006419 233 VKMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPP 312 (646)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~ 312 (646)
.+.......+++|+++++ ++ .+..+...++++|+|+||+|+||||.|||+|
T Consensus 228 -----------------~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p 278 (621)
T PLN03191 228 -----------------GCPSLEPERNKNIGWPEH-----SL-------DATPQVVSSNSKLRRVFSSSARLGFKWPENP 278 (621)
T ss_pred -----------------cccccchhhccccCCccc-----cc-------ccCcccccccccceeeeccccccccCCCCCc
Confidence 011111345566666531 11 1122223467899999999999999999999
Q ss_pred ccccccccccCCCccccc-cccccc-ccc-------------ccccCCCCCccc-chhHHHHHHhhhH----HHH--Hhh
Q 006419 313 LNLLTQKVLERPNSLKTV-KSFKTS-NSF-------------RRYSSFKPAVDD-MSSELALLAEIDI----ETL--MKR 370 (646)
Q Consensus 313 ~~~~~~~~~~~~~s~~~~-~~~~~~-~~~-------------~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~~ 370 (646)
|+|++|+...+.++++.. .+|... .++ ....+++++.+. ..++..++++++. +.. ..+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (621)
T PLN03191 279 SLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCR 358 (621)
T ss_pred cccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhc
Confidence 999999886665544331 111110 000 001122223222 2233445555544 333 355
Q ss_pred cCCCCeEEEEeehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCH
Q 006419 371 KRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE 450 (646)
Q Consensus 371 ~~~~~Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~ 450 (646)
.....|++|.|+|||||+|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+||||||||+||++++++
T Consensus 359 ~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~ 438 (621)
T PLN03191 359 KVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAE 438 (621)
T ss_pred cCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCccc
Q 006419 451 LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFD 530 (646)
Q Consensus 451 ~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 530 (646)
++||+|+.+|++++.|........|..|.+||+|||||||||||++++++++++|.+++|+.||++|||+.|+++|++|.
T Consensus 439 ~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQL~~e~~~g~vF~ 518 (621)
T PLN03191 439 QRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQLIKELRSGHVFD 518 (621)
T ss_pred HHHHHHHHHHHhccccCcccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhHHHHHHHcCCccC
Confidence 99999999999999997654455688999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcccCCCcccccCCccccCCC--CCCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEEcCh
Q 006419 531 GWSEGTLIFAPTYKYELNSEKYYGED--PKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSP 608 (646)
Q Consensus 531 gf~Eg~I~FpPTYKy~~~Sd~Y~~~~--~~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~v~~~ 608 (646)
||+||+|+|||||||+.|++.|++.+ ++.++|+|||||||||+|++++++.|.+.++++||||||+|.|.++|+++++
T Consensus 519 GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~ 598 (621)
T PLN03191 519 GWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDH 598 (621)
T ss_pred CcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCH
Confidence 99999999999999999999998643 3568999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccchhh---hcchhh
Q 006419 609 RKLQRALTLTDAE---IENEDV 627 (646)
Q Consensus 609 ~klqr~l~~~~~~---~~~~~~ 627 (646)
+|+|+++++++++ |+||..
T Consensus 599 ~k~q~~~~~~~a~~~~~~~~~~ 620 (621)
T PLN03191 599 RKLQRALNVNSAAASAVHPEPS 620 (621)
T ss_pred HHHHhhhhcchhhhhccCCccC
Confidence 9999999999999 888754
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-89 Score=766.67 Aligned_cols=316 Identities=41% Similarity=0.725 Sum_probs=293.1
Q ss_pred hhHhhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeeCCCCcccccCC
Q 006419 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDMN------EPADIYVLGLQEIVPLTAGNIFGAED 153 (646)
Q Consensus 80 ~~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~~------~~~DIyVlGfQEiV~Lna~~vl~~~d 153 (646)
..|+.|.+| |+..++||||||||||||+.+...-||++||++. .++|||||||||||+||||||++++
T Consensus 522 ~~L~er~~e-----yt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~As- 595 (1080)
T KOG0566|consen 522 KELRERRSE-----YTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSAS- 595 (1080)
T ss_pred HHHHHhhhh-----hccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceeccC-
Confidence 455666665 9999999999999999997766656899999963 3799999999999999999999886
Q ss_pred CCchhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcc
Q 006419 154 SRPVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPV 233 (646)
Q Consensus 154 ~~~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (646)
+...+.|++.|+++||+.
T Consensus 596 ~tk~~~Wee~i~~~Ln~~-------------------------------------------------------------- 613 (1080)
T KOG0566|consen 596 TTKRRFWEEKILKTLNRY-------------------------------------------------------------- 613 (1080)
T ss_pred hHHHHHHHHHHHHHhcCC--------------------------------------------------------------
Confidence 455899999999999873
Q ss_pred cccccccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCc
Q 006419 234 KMFTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPL 313 (646)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~ 313 (646)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeehhhhheeeeee
Q 006419 314 NLLTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWV 393 (646)
Q Consensus 314 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~V~v 393 (646)
..+|+++.|.||||++|.+|+
T Consensus 614 -----------------------------------------------------------~~kYvlL~s~QlvGv~L~iF~ 634 (1080)
T KOG0566|consen 614 -----------------------------------------------------------KNKYVLLRSEQLVGVCLLLFI 634 (1080)
T ss_pred -----------------------------------------------------------CCceEEEehhhhheeeEEEEE
Confidence 126899999999999999999
Q ss_pred eccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCC
Q 006419 394 RRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIG 473 (646)
Q Consensus 394 r~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~ 473 (646)
|.+..++|++|..++++||++|..||||||+|||.++.|+|||||+|||||+.+. ..||.||.+|.++++|+
T Consensus 635 r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~snv--~ERn~DY~tI~r~l~Fp------ 706 (1080)
T KOG0566|consen 635 RPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSNV--EERNEDYKTIARKLRFP------ 706 (1080)
T ss_pred cccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccchH--hhhhhhHHHHHHhcccc------
Confidence 9999999999999999999999999999999999999999999999999999874 67999999999999995
Q ss_pred CCcccCCcceEEEeCccCccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCcccc
Q 006419 474 FPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYY 553 (646)
Q Consensus 474 ~P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~ 553 (646)
+.+.|.+||+|||||||||||+|++++|+.+|.+++|+.|+++|||.+|+.+|.+|.||.|++|+|+|||||+.||++||
T Consensus 707 ~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~ltF~PTYKyD~gTd~YD 786 (1080)
T KOG0566|consen 707 RGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQLTFPPTYKYDPGTDDYD 786 (1080)
T ss_pred CCccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccccccccCCcccccCCCCccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEEcChhhhhh
Q 006419 554 GEDPKVGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQR 613 (646)
Q Consensus 554 ~~~~~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~v~~~~klqr 613 (646)
+ ++|+|+|||||||||++..+.++.|.+.|+++||||||+|+|.++|..++.+|..+
T Consensus 787 T---SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~ 843 (1080)
T KOG0566|consen 787 T---SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLR 843 (1080)
T ss_pred c---chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHH
Confidence 6 46999999999999999999999999999999999999999999999999876554
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=6.7e-76 Score=615.21 Aligned_cols=225 Identities=38% Similarity=0.700 Sum_probs=206.0
Q ss_pred CCeEEEEeehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHH
Q 006419 374 SSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKR 453 (646)
Q Consensus 374 ~~Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rR 453 (646)
..|+++++.+|+||+|+||+|.++.++|+++.+++|++|++|.+||||||+|+|.+.+++||||||||++|+++ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999875 6799
Q ss_pred hhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCCh-HHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCc
Q 006419 454 NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY-EKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 532 (646)
Q Consensus 454 N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 532 (646)
|+|+.+|++.+.|+... ...+.+||++||||||||||++.+ ++++++|++++|..||++|||+.+++++++|.||
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f 233 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGF 233 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcC
Confidence 99999999998885321 112678999999999999999988 8999999999999999999999999999999999
Q ss_pred ccCCcccCCCcccc-cCCccccCCCCCCCCCCCccccceeec--CCCeEEEe-ecc-ccCCCCCCCCceeEEEEEEEEcC
Q 006419 533 SEGTLIFAPTYKYE-LNSEKYYGEDPKVGRRNPSWCDRILSY--GKGMRLLN-YRR-NEIKMSDHRPVTATYMAEVEVFS 607 (646)
Q Consensus 533 ~Eg~I~FpPTYKy~-~~Sd~Y~~~~~~~k~R~PAWCDRIL~~--g~~i~~l~-Y~s-~e~~~SDHRPV~A~F~v~V~v~~ 607 (646)
.|++|+|||||||+ .|++.|++ ++|+|+|||||||||+ +.++.++. |.+ .++.+||||||+|.|.+.|..++
T Consensus 234 ~E~~I~F~PTYK~~~~~t~~Yd~---~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 234 QEGPITFPPTYKYDSVGTETYDT---SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred ccCCcCCCCCeeecCCCCccccC---cccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 99999999999999 99999985 4688999999999999 45566665 987 47999999999999999998653
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-64 Score=532.38 Aligned_cols=314 Identities=36% Similarity=0.596 Sum_probs=281.5
Q ss_pred hhHhhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeeCCCCcccccCCCC
Q 006419 80 PRIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM----NEPADIYVLGLQEIVPLTAGNIFGAEDSR 155 (646)
Q Consensus 80 ~~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~----~~~~DIyVlGfQEiV~Lna~~vl~~~d~~ 155 (646)
..++.++++ |+-.+++.||++|+|++|+.|. .++..||++ .+.+|+||+||||+|+|+++.|++++...
T Consensus 15 ~~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~ 87 (460)
T COG5411 15 AVLRQRRSK-----YVIEKDVSIFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYD 87 (460)
T ss_pred HHHHHHhhh-----heeecceeeEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCccc
Confidence 355666666 9999999999999999998774 478999997 34689999999999999999999887544
Q ss_pred chhhHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccc
Q 006419 156 PVSKWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKM 235 (646)
Q Consensus 156 ~~~~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (646)
....|++.+-..||. ..
T Consensus 88 rl~~wes~~~~~Ln~-~~-------------------------------------------------------------- 104 (460)
T COG5411 88 RLRIWESKVLDCLNG-AQ-------------------------------------------------------------- 104 (460)
T ss_pred ccchhHHHHHHHhcc-cc--------------------------------------------------------------
Confidence 457888887777776 11
Q ss_pred cccccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccc
Q 006419 236 FTNYEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNL 315 (646)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~ 315 (646)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeehhhhheeeeeeec
Q 006419 316 LTQKVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRR 395 (646)
Q Consensus 316 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~V~vr~ 395 (646)
...+|.++.+.||.|++|.||.+.
T Consensus 105 --------------------------------------------------------~~eky~~l~s~q~~~~~~~vf~~~ 128 (460)
T COG5411 105 --------------------------------------------------------SDEKYSLLRSPQLGGILLRVFSLA 128 (460)
T ss_pred --------------------------------------------------------cCCceEEecchhccCcceEEeeec
Confidence 023677888889999999999999
Q ss_pred cccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCC
Q 006419 396 SLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFP 475 (646)
Q Consensus 396 ~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P 475 (646)
+-.+.+.+|....-+||++|..+|||+|+++|....++||||+|||+||..+ .++|+.||..|.+.++|.. .
T Consensus 129 ~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~------g 200 (460)
T COG5411 129 TNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR------G 200 (460)
T ss_pred cccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC------C
Confidence 9999999999999999999999999999999999999999999999999876 5789999999999999852 3
Q ss_pred cccCCcceEEEeCccCccccCChHHHHHHHhhhc--hhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCcccc
Q 006419 476 KSICDHERIIWLGDLNYRINLPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYY 553 (646)
Q Consensus 476 ~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~ 553 (646)
..|.+||+|||+|||||||++.+++++..+...+ ...|+++|||..|+..|.+|.||+|..|+|||||||+.|+++|+
T Consensus 201 ~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i~FpPTYKfd~gt~~yd 280 (460)
T COG5411 201 LRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVITFPPTYKFDYGTDEYD 280 (460)
T ss_pred ceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccccCCCceEeecCCcccc
Confidence 5789999999999999999999999999888776 78899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccceeecCCCeEEEeecccc-CCCCCCCCceeEEEEEEEEcChhh
Q 006419 554 GEDPKVGRRNPSWCDRILSYGKGMRLLNYRRNE-IKMSDHRPVTATYMAEVEVFSPRK 610 (646)
Q Consensus 554 ~~~~~~k~R~PAWCDRIL~~g~~i~~l~Y~s~e-~~~SDHRPV~A~F~v~V~v~~~~k 610 (646)
++ .|.|+||||||||+++..+..++|.+.. +.+||||||+|+|.+.+.++++.+
T Consensus 281 ts---dk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~ 335 (460)
T COG5411 281 TS---DKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSK 335 (460)
T ss_pred cc---ccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcch
Confidence 64 5799999999999999999999999987 999999999999999999998754
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.96 E-value=1.8e-30 Score=266.26 Aligned_cols=173 Identities=21% Similarity=0.307 Sum_probs=130.0
Q ss_pred cccceEEEEEEEEcCeEEEEEeecCCCCCCCcCH---------HHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006419 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDE---------LKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 487 (646)
Q Consensus 417 lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~---------~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~ 487 (646)
++.||.+.+|++|+++.|||||+||.++..+.+. ..|..++..|+.+ +. ..+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r--~~--------~~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAE--CS--------AFISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHH--Hh--------hccCCCCcEEEe
Confidence 7899999999999999999999999999987642 4688889999875 21 123457899999
Q ss_pred CccCccccCChH-H-HH------HHHh------hhchhhhhhhhHhHHHHhc-------------CCcccCcccCCcccC
Q 006419 488 GDLNYRINLPYE-K-TR------ELIS------KKQWSKLAESDQLLRELRK-------------GRAFDGWSEGTLIFA 540 (646)
Q Consensus 488 GDLNYRI~l~~~-~-v~------~lI~------~~~~~~LL~~DQL~~e~~~-------------g~vF~gf~Eg~I~Fp 540 (646)
||||||++...- + .+ ..++ ...|.+||++|||..|+++ .+.|.++.|.+|+||
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLaE~pI~Fp 214 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELAEFAIRFP 214 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchhcccccCC
Confidence 999999995321 1 11 1111 2458899999999999985 678889999999999
Q ss_pred CCcccccC-----C-----------cccc---------CC-------------C-----------------CCCCCCCCc
Q 006419 541 PTYKYELN-----S-----------EKYY---------GE-------------D-----------------PKVGRRNPS 565 (646)
Q Consensus 541 PTYKy~~~-----S-----------d~Y~---------~~-------------~-----------------~~~k~R~PA 565 (646)
||||-... . ..|. ++ + .+.+.|+||
T Consensus 215 PTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~~~~r~pa 294 (356)
T PTZ00312 215 PTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCRDRLPA 294 (356)
T ss_pred CcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcchhcccchh
Confidence 99993321 0 0111 00 0 123589999
Q ss_pred cccceeecCCC----------------------------eEEEeeccccCCCCCCCCceeEE
Q 006419 566 WCDRILSYGKG----------------------------MRLLNYRRNEIKMSDHRPVTATY 599 (646)
Q Consensus 566 WCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHRPV~A~F 599 (646)
|||||||...+ .....|.+.++..+||.+|...|
T Consensus 295 wcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 295 WCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 99999997321 23467899999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-28 Score=231.28 Aligned_cols=142 Identities=47% Similarity=0.720 Sum_probs=128.4
Q ss_pred CeEEEEeehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHh
Q 006419 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (646)
Q Consensus 375 ~Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN 454 (646)
.|++++++||+|+++.+|++.++..++.+++++++++|+||++||||+|++++.++++.+|||||||++|.++.+ +.||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998754 3399
Q ss_pred hcHHHHHHhcCCCCCCCCCCCcccCC-cceEEEeCccCccccCC-hHHHHHHHhhhchhhhhhhh
Q 006419 455 ADVHEIHRRTHFRSHSEIGFPKSICD-HERIIWLGDLNYRINLP-YEKTRELISKKQWSKLAESD 517 (646)
Q Consensus 455 ~D~~eIl~r~~F~~~~~~~~P~~I~d-hD~vfw~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 517 (646)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.++..++..+.|..|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999975544445555544 89999999999999988 88889999999998888765
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.71 E-value=3.3e-18 Score=176.59 Aligned_cols=166 Identities=26% Similarity=0.403 Sum_probs=108.8
Q ss_pred cccceEEEEEEEEcCeEEEEEeecCCCCCCCcC---------HHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEe
Q 006419 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---------ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWL 487 (646)
Q Consensus 417 lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d---------~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~ 487 (646)
++.||-.-.++.|++.-|.|||.||-+...+-. -.+|.+.+.-+|.++.= .=+..+.+|.|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~----------~~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE----------EGLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh----------hccCceEEEEe
Confidence 578999999999999999999999977654321 23566666666655321 11345689999
Q ss_pred CccCccccCCh-----------HHHH--------HH---------------Hhhhchh-------------hhhhhhHhH
Q 006419 488 GDLNYRINLPY-----------EKTR--------EL---------------ISKKQWS-------------KLAESDQLL 520 (646)
Q Consensus 488 GDLNYRI~l~~-----------~~v~--------~l---------------I~~~~~~-------------~LL~~DQL~ 520 (646)
|||||||+... +.+. ++ |+++.|+ .++.+|.-.
T Consensus 224 GdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~dkEl 303 (391)
T KOG1976|consen 224 GDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYDKEL 303 (391)
T ss_pred cccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcchHH
Confidence 99999998421 1111 11 1222222 222222111
Q ss_pred HHHhcCCcccC-cccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCC----------eEEEeecc--ccC
Q 006419 521 RELRKGRAFDG-WSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKG----------MRLLNYRR--NEI 587 (646)
Q Consensus 521 ~e~~~g~vF~g-f~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRIL~~g~~----------i~~l~Y~s--~e~ 587 (646)
..|.. ..|..|.|||||.|..+... .....+.|+||||||||+.... -+.+.|.. .+.
T Consensus 304 ------~nf~~kl~E~~i~FpPsypysed~~~---~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~ 374 (391)
T KOG1976|consen 304 ------ANFAFKLKEETIFFPPSYPYSEDDSG---KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEK 374 (391)
T ss_pred ------HHHHHHHhheeecCCCCCCCCcCccc---hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccccc
Confidence 12333 68899999999999965422 0112368999999999997431 23477887 478
Q ss_pred CCCCCCCceeEEEE
Q 006419 588 KMSDHRPVTATYMA 601 (646)
Q Consensus 588 ~~SDHRPV~A~F~v 601 (646)
++.|||||+..|.+
T Consensus 375 c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 375 CVGDHKPVFLHASI 388 (391)
T ss_pred ccCCCcceEEEEee
Confidence 99999999998865
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.45 E-value=3.1e-06 Score=88.77 Aligned_cols=148 Identities=18% Similarity=0.245 Sum_probs=86.6
Q ss_pred cccccceEEEEEEEEcCeEEEEEeecCCCCCC----CcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCcc
Q 006419 415 GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEK----DGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDL 490 (646)
Q Consensus 415 G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek----~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDL 490 (646)
....+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.- ...| ..+.+|++|||
T Consensus 116 d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~-----~~~~----~~~pvIl~GDf 186 (283)
T TIGR03395 116 DNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS-----KNIP----KDETVLIGGDL 186 (283)
T ss_pred ccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh-----ccCC----CCceEEEEeeC
Confidence 34578999999999999999999999998532 11246799999999875321 1112 23569999999
Q ss_pred CccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccce
Q 006419 491 NYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRI 570 (646)
Q Consensus 491 NYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRI 570 (646)
|-.=+ ..+...+ ...+.... .+|. .|.|-|+...+.|.... . .+-.|.+-|||
T Consensus 187 N~~~~--s~~~~~m---------------l~~l~~~~--p~~~------g~~~T~d~~~N~~a~~~-~-~~~~~~~lDyv 239 (283)
T TIGR03395 187 NVNKG--SNEYHDM---------------FKTLNVSE--PRYV------GVPATWDATTNSIAKYY-Y-PKEEPEYLDYI 239 (283)
T ss_pred CCCCC--CHHHHHH---------------HHHhcccC--CCcC------CCCCCcCCCcCchhhhh-c-CCCCcceEEEE
Confidence 97422 1111111 11111110 1121 23444566555554211 1 12236689999
Q ss_pred eecCCCeE----------EEee----cc-ccCCCCCCCCceeE
Q 006419 571 LSYGKGMR----------LLNY----RR-NEIKMSDHRPVTAT 598 (646)
Q Consensus 571 L~~g~~i~----------~l~Y----~s-~e~~~SDHRPV~A~ 598 (646)
|.++...+ ..+. .. .-..+|||-||+|.
T Consensus 240 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 240 FVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred EEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 99854321 1111 11 23578999999985
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.34 E-value=6.4e-06 Score=85.03 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=76.2
Q ss_pred ceEEEEEEEE-cCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCCh
Q 006419 420 KGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPY 498 (646)
Q Consensus 420 KGaVsVs~~l-~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~ 498 (646)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. ... ..+|++||||-.-....
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~-----~~~--------~p~Il~GDFN~~~~~~~ 199 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA-----HHS--------GPVILAGDFNTWSRKRM 199 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH-----hCC--------CCEEEEcccccCcccch
Confidence 7888888888 566799999999865332 2467888888876431 111 24999999994111000
Q ss_pred HHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecCCCeE
Q 006419 499 EKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYGKGMR 578 (646)
Q Consensus 499 ~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRIL~~g~~i~ 578 (646)
.....+. .+. |+.. .+|++.-.+ ..+ ..| -|+||.. ++.
T Consensus 200 ~~l~~~~---------------~~~-------~l~~--~~~~~~~~~----~~~-------~~~----ID~I~~~--~~~ 238 (263)
T PRK05421 200 NALKRFA---------------REL-------GLKE--VRFTDDQRR----RAF-------GRP----LDFVFYR--GLN 238 (263)
T ss_pred HHHHHHH---------------HHc-------CCCc--cCcCCcccc----ccc-------CCC----cceEEEC--CcE
Confidence 0111111 110 1111 234433211 011 134 5999974 677
Q ss_pred EEeeccccCCCCCCCCceeEEEE
Q 006419 579 LLNYRRNEIKMSDHRPVTATYMA 601 (646)
Q Consensus 579 ~l~Y~s~e~~~SDHRPV~A~F~v 601 (646)
..++...+...|||+||.|.|.+
T Consensus 239 v~~~~v~~~~~SDH~Pv~a~l~l 261 (263)
T PRK05421 239 VSKASVLVTRASDHNPLLVEFSL 261 (263)
T ss_pred EEEEEcCCCCCCCccCEEEEEEe
Confidence 77777777889999999999976
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.07 E-value=5.8e-07 Score=86.02 Aligned_cols=97 Identities=25% Similarity=0.285 Sum_probs=53.3
Q ss_pred hhheeeeeeeccccccccceeEeEEEeeec---cccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHH
Q 006419 385 VGIFLTIWVRRSLRRHIQNVRVSTVGVGVM---GFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIH 461 (646)
Q Consensus 385 vGi~L~V~vr~~l~~~I~~v~vs~VgtGi~---G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl 461 (646)
.+..++|+.|.++...+........+.+.. ....+++.+.+++. +..|+++|+||.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 466678888887654444333222222222 22455666677666 9999999999998542 2333333333
Q ss_pred HhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCC
Q 006419 462 RRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLP 497 (646)
Q Consensus 462 ~r~~-F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~ 497 (646)
..+. +.. ..+ ...+|++||||.+....
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~ 172 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSR 172 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccc
Confidence 3221 100 000 01599999999987653
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.69 E-value=0.00021 Score=74.57 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=42.3
Q ss_pred ceEEEEEEEEc-CeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccC
Q 006419 420 KGSVSVSMSIH-QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 491 (646)
Q Consensus 420 KGaVsVs~~l~-~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLN 491 (646)
.|++-+.+... +..|-+||+||.=.+ ..|.++...|++...+. . -..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~--------~----~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLP--------A----LNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCc--------c----cCceEEEccCC
Confidence 68888888885 669999999999554 46899999998743332 1 11599999999
No 12
>PRK11756 exonuclease III; Provisional
Probab=97.47 E-value=0.00062 Score=69.91 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=36.8
Q ss_pred ceEEEEEEEEcCeEEEEEeecCCCCCCCc---CHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 420 KGSVSVSMSIHQTLFCFVCAHLTSGEKDG---DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 420 KGaVsVs~~l~~ts~cFVn~HLaagek~~---d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
.+.+.+.+...+..|.|+|+|++.+.... ....|.+.+..|...+.-. ......+|++||||-
T Consensus 89 ~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~----------~~~~~pvIl~GDfN~ 154 (268)
T PRK11756 89 RRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETE----------LSPDNPLLIMGDMNI 154 (268)
T ss_pred CCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHH----------hccCCCEEEEeeccc
Confidence 46788888776556999999998875321 1123334444443321100 001235999999996
No 13
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.38 E-value=0.0015 Score=65.63 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGKLPPDDLDI-DDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~~p~~~~dL-~~WL~~~~~~DIyVlGfQEi 140 (646)
.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 57899999953222 244 7777554 4587 678998
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=96.98 E-value=0.0038 Score=78.59 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=41.7
Q ss_pred ccceEEEEEEEEc----C-eEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcC--CCCCCCCCCCcccCCcceEEEeCcc
Q 006419 418 GNKGSVSVSMSIH----Q-TLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH--FRSHSEIGFPKSICDHERIIWLGDL 490 (646)
Q Consensus 418 GNKGaVsVs~~l~----~-ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~--F~~~~~~~~P~~I~dhD~vfw~GDL 490 (646)
.+||.+.+.+.+. + ..+-|+|+||....... .|.+++.+|.+-.. ..... .-..+.....+|++|||
T Consensus 131 ~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~---~R~~Q~~ql~~~i~~~i~~~~---~~~~~~~~~PvILaGDF 204 (1452)
T PTZ00297 131 VRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLP---STSSQVQETRRFVESVIANVY---EQNNDGAEIPFVIAGDF 204 (1452)
T ss_pred cccceEEEEEEccccCCCCceEEEEEeCCCCCCCcc---hHHHHHHHHHHHHHHhhhhhc---ccccCCCCCCEEEEeeC
Confidence 5789988888884 2 57999999999875432 24555555554211 10000 00111233569999999
Q ss_pred Cc
Q 006419 491 NY 492 (646)
Q Consensus 491 NY 492 (646)
|=
T Consensus 205 N~ 206 (1452)
T PTZ00297 205 NI 206 (1452)
T ss_pred CC
Confidence 94
No 15
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.034 Score=59.61 Aligned_cols=132 Identities=23% Similarity=0.332 Sum_probs=71.8
Q ss_pred ccceEEEEEEEE-cCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccC
Q 006419 418 GNKGSVSVSMSI-HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINL 496 (646)
Q Consensus 418 GNKGaVsVs~~l-~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l 496 (646)
+-||++.+...+ +++.+..+|.|.....-..+ ..| ++..++.+... +..- -+|+.||||- .
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~-~~~-~ql~~l~~~i~-----~~~g--------pvIlaGDfNa---~ 234 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVGTD-PQR-AQLLELGDQIA-----GHSG--------PVILAGDFNA---P 234 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCCcc-HHH-HHHHHHHHHHH-----cCCC--------CeEEeecCCC---c
Confidence 457777766554 57899999999985443333 344 66666665421 1112 3999999995 2
Q ss_pred ChHHH-HHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcc-ccceeecC
Q 006419 497 PYEKT-RELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSW-CDRILSYG 574 (646)
Q Consensus 497 ~~~~v-~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAW-CDRIL~~g 574 (646)
+-..+ +.+ ..|...+.. .++| -.| ..|-|+ . ..|.+.| .|.|+++|
T Consensus 235 pWS~~~~R~------~~l~~~~~~---~~aG-----~~~--~~~~p~--------~--------~~r~~g~PIDhvf~rg 282 (309)
T COG3021 235 PWSRTAKRM------AALGGLRAA---PRAG-----LWE--VRFTPD--------E--------RRRAFGLPIDHVFYRG 282 (309)
T ss_pred chhHHHHHH------HHhcccccc---hhcc-----CCc--cccCHH--------H--------HhhccCCCcceeeecC
Confidence 22221 211 112111110 1112 011 112111 1 1222333 79999998
Q ss_pred CCeEEEeeccccCCCCCCCCceeEEEE
Q 006419 575 KGMRLLNYRRNEIKMSDHRPVTATYMA 601 (646)
Q Consensus 575 ~~i~~l~Y~s~e~~~SDHRPV~A~F~v 601 (646)
+....=.+.+.+-|||+||.+.|+.
T Consensus 283 --l~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 283 --LTVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred --cchhhhhhccccCCCCCceEEEEEe
Confidence 4444444556799999999999974
No 16
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=95.68 E-value=0.04 Score=63.99 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=43.2
Q ss_pred EEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhc
Q 006419 433 LFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQ 509 (646)
Q Consensus 433 s~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~ 509 (646)
.||++|+||..+.... .-|..+...|++.+. +.. ..+.| ||++||||- .+.+.+.++|.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~~~~--~~~~P--------vIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEKIAA--SADIP--------MLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHHHhh--cCCCc--------eEEeccCCC---CCCChhhhhhhcCC
Confidence 6999999997665433 356777777776532 110 11233 999999997 78888888887764
No 17
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=94.82 E-value=0.15 Score=52.00 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 57899999943221 2467888554 4687 558996
No 18
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=94.72 E-value=0.28 Score=50.92 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=25.5
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.+.||||||.--.....|.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5789999995333323588999654 4687 788999
No 19
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=93.67 E-value=0.075 Score=46.95 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=17.2
Q ss_pred CccccceeecCCCeEE-EeeccccCCCCCCCCce
Q 006419 564 PSWCDRILSYGKGMRL-LNYRRNEIKMSDHRPVT 596 (646)
Q Consensus 564 PAWCDRIL~~g~~i~~-l~Y~s~e~~~SDHRPV~ 596 (646)
.+--|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4448999987543222 11122467889999985
No 20
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=93.61 E-value=0.14 Score=54.23 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=25.5
Q ss_pred EEEEEeecCCCCCCCcCHHHHhhcHHH-HHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 433 LFCFVCAHLTSGEKDGDELKRNADVHE-IHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 433 s~cFVn~HLaagek~~d~~rRN~D~~e-Il~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
.|.+|++|+.+.. ..++...+.+ ++.... . ...+-||++||||-
T Consensus 143 ~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~--~----------~~~~~villGDFNa 187 (276)
T smart00476 143 EFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ--K----------WGTEDVIFMGDFNA 187 (276)
T ss_pred cEEEEEecCChHH----HHHHHHHHHHHHHHHHH--h----------hccCCEEEEccCCC
Confidence 6899999999853 2234433222 222110 0 01244999999997
No 21
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=93.31 E-value=0.39 Score=52.69 Aligned_cols=197 Identities=19% Similarity=0.222 Sum_probs=106.4
Q ss_pred Eeehhhhheeeeeeeccccccccce-----eEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCC---CCcCHH
Q 006419 380 VSKQMVGIFLTIWVRRSLRRHIQNV-----RVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGE---KDGDEL 451 (646)
Q Consensus 380 ~SkqMvGi~L~V~vr~~l~~~I~~v-----~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaage---k~~d~~ 451 (646)
-|.-| |--|+||.|--+..-..+. ....+=.| ...|-||--..++.+.+..+.+-|+||-|-- ++.-.-
T Consensus 74 HSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~ 150 (422)
T KOG3873|consen 74 HSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLC 150 (422)
T ss_pred hcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhhh
Confidence 45556 8888999887654322211 11122222 4577899888889999999999999998742 222245
Q ss_pred HHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc-CChHHHH--HHHhhhchhhhhhhhHhHHHHhcCCc
Q 006419 452 KRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN-LPYEKTR--ELISKKQWSKLAESDQLLRELRKGRA 528 (646)
Q Consensus 452 rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~-l~~~~v~--~lI~~~~~~~LL~~DQL~~e~~~g~v 528 (646)
.|-++.-++.+-.+- +-...|.||..||||-+=. ++..-.. .++ ..|..|.. ||.-..--++.-
T Consensus 151 HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h~-~q~e~~~~r~s~ 217 (422)
T KOG3873|consen 151 HRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLHL-DQCESDSFRLSE 217 (422)
T ss_pred HHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhch-hhhcCcccccch
Confidence 677666666542111 1123588999999996432 2322111 122 23443322 333221111222
Q ss_pred ccCcccCCcccCCCcccccCCccccCC--CCC--CCCCCCccccceeecCCC--eEEEeec----c---ccCCCCCCCCc
Q 006419 529 FDGWSEGTLIFAPTYKYELNSEKYYGE--DPK--VGRRNPSWCDRILSYGKG--MRLLNYR----R---NEIKMSDHRPV 595 (646)
Q Consensus 529 F~gf~Eg~I~FpPTYKy~~~Sd~Y~~~--~~~--~k~R~PAWCDRIL~~g~~--i~~l~Y~----s---~e~~~SDHRPV 595 (646)
|++..||.-+ +.--+.|... .+. -++| .|.||+++.. ++...|. + .+..+|||--+
T Consensus 218 ~~~l~~g~tc-------d~~~N~y~~aqk~~ddp~~~R----iDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SDH~Al 286 (422)
T KOG3873|consen 218 DKELVEGNTC-------DSPLNCYTSAQKREDDPLGKR----IDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSDHEAL 286 (422)
T ss_pred hhhhhcCCcc-------cCcchhhhHHHhCCCCcccee----eeEEEEcCcceEEEeeeEEecCCCCCCCCCCccchhhh
Confidence 3444455311 1111222210 000 1467 7999999653 2333332 2 25789999999
Q ss_pred eeEEEEEE
Q 006419 596 TATYMAEV 603 (646)
Q Consensus 596 ~A~F~v~V 603 (646)
.|++.+.-
T Consensus 287 ~a~L~I~~ 294 (422)
T KOG3873|consen 287 MATLKIFK 294 (422)
T ss_pred eeEEEeec
Confidence 99998753
No 22
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.75 E-value=0.047 Score=56.63 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.3
Q ss_pred EEEEEEcCeEEEEEeecCCCCCCCc-CHHHH---hhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 424 SVSMSIHQTLFCFVCAHLTSGEKDG-DELKR---NADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 424 sVs~~l~~ts~cFVn~HLaagek~~-d~~rR---N~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
.|...+. .|.++|+..+.+.... ....| ..++.+.++.+ . ....+||+||||=
T Consensus 91 ~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l--~------------~~~~~Ii~GD~Nv 147 (250)
T PRK13911 91 VITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKAL--E------------LKKPVIVCGDLNV 147 (250)
T ss_pred EEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhc--c------------cCCCEEEEccccC
Confidence 3444443 5899999999986432 11222 23344444331 0 1235999999994
No 23
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=91.04 E-value=0.044 Score=57.63 Aligned_cols=33 Identities=36% Similarity=0.769 Sum_probs=24.2
Q ss_pred EEeeeeCCCC-CCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGK-LPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~-~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.+-||||||. +... -+-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~--~~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLK--KLLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHH--HHHHHHHHhCC-CE--EEEEec
Confidence 4679999993 3222 28999976555 86 899999
No 24
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=90.20 E-value=0.63 Score=49.43 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=43.5
Q ss_pred EEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006419 422 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 495 (646)
Q Consensus 422 aVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~ 495 (646)
-..+...+.+..+||.++||.+-.. ...+|.+++.+-+.+++=- -..+| .-.||+.||+|.|=.
T Consensus 194 L~I~Ev~v~G~Kl~l~tsHLEStr~--h~P~r~~qF~~~~~k~~Ea---Ie~lP-----nA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 194 LLIVEVNVSGNKLCLMTSHLESTRG--HAPERMNQFKMVLKKMQEA---IESLP-----NATVIFGGDTNLRDR 257 (349)
T ss_pred eEEEEEeecCceEEEEeccccCCCC--CChHHHHHHHHHHHHHHHH---HHhCC-----CceEEEcCcccchhh
Confidence 3455667788889999999999764 3467888887766654210 00112 345999999998643
No 25
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=83.49 E-value=1.7 Score=49.35 Aligned_cols=94 Identities=18% Similarity=0.117 Sum_probs=58.8
Q ss_pred eeeeeecccccccccee--EeEEEeeeccccccceEEEEEEEEcCe---EEEEEeecCCCCCCCcCHHHHhhcHHHHHHh
Q 006419 389 LTIWVRRSLRRHIQNVR--VSTVGVGVMGFIGNKGSVSVSMSIHQT---LFCFVCAHLTSGEKDGDELKRNADVHEIHRR 463 (646)
Q Consensus 389 L~V~vr~~l~~~I~~v~--vs~VgtGi~G~lGNKGaVsVs~~l~~t---s~cFVn~HLaagek~~d~~rRN~D~~eIl~r 463 (646)
++|+-+.++-+.+.+-. ..-.+.|++..-.-++.|+..|++-+. -|+..|+||--+...++ .|.+++.-|++.
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~--vrL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSD--VRLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccc--hhhHHHHHHHHH
Confidence 34444555444443333 234566666543336677777766655 89999999999987765 478888888875
Q ss_pred cC-CCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 464 TH-FRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 464 ~~-F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
+. |.... + .|=.||++||||-
T Consensus 282 ~~~~~~~~----~----~~~pi~l~GDfNt 303 (495)
T KOG2338|consen 282 LEKMSKSS----K----SHWPIFLCGDFNT 303 (495)
T ss_pred HHHHHhhc----c----cCCCeEEecCCCC
Confidence 42 21100 0 3446999999994
No 26
>PRK11756 exonuclease III; Provisional
Probab=78.42 E-value=0.58 Score=48.14 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=22.8
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.|.||||+|..-.- ..|.+||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHhc-CCCE--EEEEec
Confidence 46799999942111 1367888554 4687 669998
No 27
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.74 E-value=1.5 Score=44.13 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=30.1
Q ss_pred eEEEEEeecCCCCCCCcC--HHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006419 432 TLFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (646)
Q Consensus 432 ts~cFVn~HLaagek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI 494 (646)
..+.++|+|++++...+. ...|.+.+..+.+.+. . .+.....+|++||||--.
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~--------~~~~~~~~Il~GDFN~~~ 154 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--K--------ELDAGKPVIICGDMNVAH 154 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--H--------HHhcCCcEEEEeecccCC
Confidence 368899999988763322 2345545554443210 0 000123599999999644
No 28
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=68.59 E-value=1.8 Score=44.15 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=28.2
Q ss_pred EEEEEeecCCCCCCCc--CHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006419 433 LFCFVCAHLTSGEKDG--DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (646)
Q Consensus 433 s~cFVn~HLaagek~~--d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI 494 (646)
.|.++|+|++++.... ....|.+-+..+.+.+. .... ....+|++||||-..
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~~--------~~~pvIi~GDfN~~~ 151 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLVD--------KDKPVLICGDMNIAP 151 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHHh--------cCCcEEEEeecccCC
Confidence 4789999999864322 12234444444443211 0000 113499999999544
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=65.72 E-value=5.3 Score=42.55 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=35.8
Q ss_pred cceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 419 NKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
....+++++ .+ +.|.+.||.+...+ .|.+.+..|..- |.+ ..| +.-++++||||=
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFNr 195 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFNR 195 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCCC
Confidence 455666665 22 78999999998422 377888888764 320 111 234899999993
No 30
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=65.04 E-value=12 Score=39.95 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=24.2
Q ss_pred EEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeeee
Q 006419 102 ICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEIV 141 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyVlGfQEiV 141 (646)
..|||||+.|-.-.++ .++..-|..++++|| |-|||+=
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DI--la~QEag 66 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADI--LMVQEAG 66 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCE--EEEEecC
Confidence 4589999999644432 123333334567887 6789983
No 31
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=62.59 E-value=2.1 Score=40.92 Aligned_cols=33 Identities=42% Similarity=0.678 Sum_probs=19.7
Q ss_pred eeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeee
Q 006419 105 GTWNVGGKLPPDD-----LDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 105 GTwNV~G~~p~~~-----~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+||||.+..+..+ ..|..||.... ||| |+|||+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~-~Di--i~LQEv 38 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELD-PDI--IALQEV 38 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT--SE--EEEEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcC-CCE--EEEecc
Confidence 5999999211110 01677775433 785 779999
No 32
>PRK05421 hypothetical protein; Provisional
Probab=57.68 E-value=5.9 Score=41.12 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|-||||.+..-......-.++ ...||| |+|||+
T Consensus 44 lri~t~NI~~~~~~~~~~~l~~l--~~~~Di--I~LQEv 78 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWLSVLKNL--GKDADL--VLLQEA 78 (263)
T ss_pred eeEEEEEccccccccHHHHHHHh--ccCCCE--EEEEec
Confidence 66779999986432211222333 444565 889999
No 33
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=28.11 E-value=43 Score=30.10 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=27.7
Q ss_pred eeeeeeeCCCCcccccCCCCchhhHHHHHHHHhcc
Q 006419 136 GLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNR 170 (646)
Q Consensus 136 GfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~ 170 (646)
+|+ |+--+..-+|.+++..-...|.++|+++|+.
T Consensus 69 ~F~-i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 69 GVT-LVTPERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred eEE-EEeCCeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 777 6665666677888888888999999999986
No 34
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=25.33 E-value=15 Score=26.00 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=12.7
Q ss_pred HHHhhhcccCCCCCCC
Q 006419 23 VMRKWLNISTKDSDFS 38 (646)
Q Consensus 23 v~~Kwlni~~~~~df~ 38 (646)
+..|||||-.+-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999998877663
No 35
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=23.42 E-value=15 Score=24.86 Aligned_cols=14 Identities=50% Similarity=0.807 Sum_probs=10.4
Q ss_pred HHHhhhcccCCCCC
Q 006419 23 VMRKWLNISTKDSD 36 (646)
Q Consensus 23 v~~Kwlni~~~~~d 36 (646)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999877654
No 36
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=23.06 E-value=36 Score=22.98 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=7.1
Q ss_pred EEEEeeee
Q 006419 101 RICVGTWN 108 (646)
Q Consensus 101 ri~vGTwN 108 (646)
+|||||+|
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 69999987
No 37
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.84 E-value=41 Score=37.92 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=28.9
Q ss_pred CCcceEEEeCccCccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccc
Q 006419 479 CDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYE 546 (646)
Q Consensus 479 ~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~ 546 (646)
...+.||+=|||||| +|+-.-.|+.--++- .++.||.-.+|.=.=|-|-+
T Consensus 350 ~~S~LvIFKGDLNYR---------KL~GD~~W~~Tt~F~---------t~Lrgf~p~n~caLRTiKad 399 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYR---------KLTGDRKWDPTTPFS---------TALRGFAPSNICALRTIKAD 399 (434)
T ss_pred hhCcEEEEeccccHH---------HHhccCCCCCCCcHH---------HHhCCCCCCccceeeeeeee
Confidence 346789999999995 455445565322221 14456664444445555554
Done!