Query 006419
Match_columns 646
No_of_seqs 375 out of 1198
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 00:30:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 2.6E-90 9.1E-95 723.0 32.2 304 94-608 2-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 8.5E-85 2.9E-89 682.4 30.4 227 375-604 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 6.3E-82 2.1E-86 668.3 34.2 316 81-614 11-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 3.1E-77 1.1E-81 634.7 31.4 228 375-607 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 1.9E-63 6.5E-68 510.3 25.5 205 375-603 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.8 7.1E-08 2.4E-12 92.0 14.6 66 414-492 96-161 (256)
7 3teb_A Endonuclease/exonucleas 98.7 1.3E-07 4.3E-12 91.9 14.3 62 417-494 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 98.7 7.5E-08 2.6E-12 92.1 11.6 67 417-493 103-169 (256)
9 1zwx_A SMCL, sphingomyelinase- 98.6 2E-07 6.9E-12 92.9 11.8 69 417-494 128-200 (301)
10 4f1h_A Tyrosyl-DNA phosphodies 98.5 5.8E-07 2E-11 84.0 10.8 61 419-492 95-155 (250)
11 3l1w_A Uncharacterized protein 98.5 5.5E-07 1.9E-11 87.8 11.0 137 417-602 107-252 (257)
12 3i41_A Beta-hemolysin; beta to 98.4 5.6E-07 1.9E-11 92.3 10.0 70 416-494 146-219 (317)
13 4gew_A 5'-tyrosyl-DNA phosphod 98.4 8.8E-07 3E-11 93.4 11.7 102 376-493 174-275 (362)
14 3g6s_A Putative endonuclease/e 98.4 1.7E-06 5.9E-11 84.8 12.0 137 418-601 114-260 (267)
15 1ako_A Exonuclease III; AP-end 98.4 2.6E-06 8.8E-11 82.7 12.2 67 418-494 87-156 (268)
16 2ddr_A Sphingomyelin phosphodi 98.3 2.9E-06 1E-10 84.5 11.5 69 417-494 128-200 (306)
17 3mpr_A Putative endonuclease/e 98.2 1.1E-05 3.6E-10 81.4 12.0 62 418-492 118-181 (298)
18 1vyb_A ORF2 contains A reverse 97.6 0.00044 1.5E-08 65.6 12.0 53 422-493 97-149 (238)
19 2jc4_A Exodeoxyribonuclease II 97.6 0.00026 8.9E-09 68.0 10.1 53 433-495 98-152 (256)
20 1wdu_A TRAS1 ORF2P; four-layer 97.5 0.00035 1.2E-08 67.9 9.5 57 419-493 102-158 (245)
21 2o3h_A DNA-(apurinic or apyrim 97.5 0.00019 6.4E-09 71.0 7.5 34 567-600 249-284 (285)
22 2j63_A AP-endonuclease; base e 97.2 0.0019 6.6E-08 70.8 11.9 35 567-601 430-466 (467)
23 1hd7_A DNA-(apurinic or apyrim 97.1 0.00051 1.8E-08 70.0 6.4 37 101-140 61-97 (318)
24 2jc5_A Exodeoxyribonuclease; h 97.0 0.00028 9.7E-09 67.9 2.9 35 567-602 220-257 (259)
25 4b8c_D Glucose-repressible alc 96.8 0.00041 1.4E-08 79.4 2.6 73 431-508 546-619 (727)
26 2a40_B Deoxyribonuclease-1; WA 96.8 0.00038 1.3E-08 68.7 1.8 59 420-493 111-172 (260)
27 2voa_A AF_EXO, XTHA, exodeoxyr 96.5 0.0043 1.5E-07 59.8 7.1 34 567-600 217-256 (257)
28 3g91_A MTH0212, exodeoxyribonu 96.4 0.0031 1.1E-07 61.8 5.5 36 102-140 4-39 (265)
29 1sr4_B CDT B, cytolethal diste 95.8 0.035 1.2E-06 56.9 10.3 60 419-492 121-180 (261)
30 3ngq_A CCR4-NOT transcription 95.6 0.036 1.2E-06 59.6 9.7 74 431-509 194-270 (398)
31 2ei9_A Non-LTR retrotransposon 95.4 0.054 1.9E-06 53.5 9.4 35 102-140 8-42 (240)
32 4fva_A 5'-tyrosyl-DNA phosphod 89.9 0.056 1.9E-06 51.1 -0.1 34 567-601 215-256 (256)
33 4f1h_A Tyrosyl-DNA phosphodies 87.3 0.11 3.6E-06 48.0 -0.1 37 101-140 3-43 (250)
34 4gew_A 5'-tyrosyl-DNA phosphod 83.8 0.28 9.5E-06 51.5 0.9 39 98-140 116-159 (362)
35 4gz1_A Tyrosyl-DNA phosphodies 83.4 0.26 8.9E-06 46.3 0.4 35 567-601 211-254 (256)
36 2ei9_A Non-LTR retrotransposon 81.1 0.17 6E-06 49.8 -1.8 56 418-493 76-131 (240)
37 2jc5_A Exodeoxyribonuclease; h 78.8 0.24 8.1E-06 47.3 -1.6 36 102-140 2-37 (259)
38 1ako_A Exonuclease III; AP-end 78.4 0.23 7.8E-06 47.7 -1.9 34 103-140 2-35 (268)
39 3g91_A MTH0212, exodeoxyribonu 77.3 0.19 6.5E-06 48.9 -2.8 35 567-601 221-257 (265)
40 1vyb_A ORF2 contains A reverse 72.3 0.43 1.5E-05 44.7 -1.7 33 567-599 204-237 (238)
41 2voa_A AF_EXO, XTHA, exodeoxyr 71.0 0.57 2E-05 44.8 -1.2 35 102-140 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 70.7 0.42 1.4E-05 46.8 -2.3 37 101-140 28-64 (285)
43 3g6s_A Putative endonuclease/e 68.9 1.9 6.5E-05 41.6 2.0 36 101-140 3-47 (267)
44 1hd7_A DNA-(apurinic or apyrim 68.5 0.5 1.7E-05 47.8 -2.3 51 432-493 163-214 (318)
45 1sr4_B CDT B, cytolethal diste 67.8 1.6 5.4E-05 44.6 1.2 40 102-143 5-48 (261)
46 2f1n_A CDT B, cytolethal diste 67.6 4.4 0.00015 41.5 4.4 59 419-492 130-188 (262)
47 3teb_A Endonuclease/exonucleas 66.8 1.1 3.7E-05 42.8 -0.2 34 566-600 227-265 (266)
48 3l1w_A Uncharacterized protein 65.9 1.1 3.6E-05 43.1 -0.5 36 102-140 1-44 (257)
49 2f1n_A CDT B, cytolethal diste 65.6 1.5 5.1E-05 45.0 0.5 38 101-140 15-56 (262)
50 2jc4_A Exodeoxyribonuclease II 65.3 0.59 2E-05 44.4 -2.4 34 103-140 2-35 (256)
51 2j63_A AP-endonuclease; base e 64.7 0.62 2.1E-05 51.0 -2.7 37 101-140 149-188 (467)
52 1wdu_A TRAS1 ORF2P; four-layer 61.2 0.71 2.4E-05 44.4 -2.7 35 102-140 20-54 (245)
53 3mpr_A Putative endonuclease/e 60.0 1.3 4.5E-05 44.1 -1.1 40 99-140 4-52 (298)
54 2ddr_A Sphingomyelin phosphodi 54.7 8.3 0.00028 37.7 3.7 15 587-601 291-305 (306)
55 1zwx_A SMCL, sphingomyelinase- 46.5 7.2 0.00025 38.1 1.7 15 587-601 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 33.6 5.7 0.00019 40.1 -1.4 37 101-140 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=2.6e-90 Score=722.96 Aligned_cols=304 Identities=34% Similarity=0.649 Sum_probs=279.4
Q ss_pred cceeeeEEEEEeeeeCCCCCCCCCCCcccccCC-CCCCCEEEEeeeeeeeCCCCcccccCCCCchhhHHHHHHHHhcccC
Q 006419 94 YINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM-NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVSKWENIIRDTLNRIR 172 (646)
Q Consensus 94 y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~-~~~~DIyVlGfQEiV~Lna~~vl~~~d~~~~~~W~~~i~~aLn~~~ 172 (646)
||..+++|||||||||||+.|+. +|.+||.. ..+||||||||||| +|++++++..+ +.....|+++|+++|+.
T Consensus 2 yt~~~~~~i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~~-~~~~~~W~~~i~~~L~~-- 75 (313)
T 3mtc_A 2 YTYIQNFRFFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFHD-TPKEEEWFKAVSEGLHP-- 75 (313)
T ss_dssp CEEEEEEEEEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTCC-CHHHHHHHHHHHHHSCT--
T ss_pred CceeeccEEEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhcccC-cchHHHHHHHHHHhcCC--
Confidence 89999999999999999998864 78999986 56899999999999 99999988654 55688999888877642
Q ss_pred CCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCcccccccccccccccccccCC
Q 006419 173 HTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTNYEVSACADSAKLDM 252 (646)
Q Consensus 173 ~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (646)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCccccccccccCCCccccccc
Q 006419 253 PAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQKVLERPNSLKTVKS 332 (646)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~~~~~~~~s~~~~~~ 332 (646)
T Consensus 76 -------------------------------------------------------------------------------- 75 (313)
T 3mtc_A 76 -------------------------------------------------------------------------------- 75 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeehhhhheeeeeeeccccccccceeEeEEEee
Q 006419 333 FKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVG 412 (646)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtG 412 (646)
...|++|+|+|||||+|+||||+++.++|++|++++||||
T Consensus 76 ----------------------------------------~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG 115 (313)
T 3mtc_A 76 ----------------------------------------DAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115 (313)
T ss_dssp ----------------------------------------TSCEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECS
T ss_pred ----------------------------------------CCCEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeeccc
Confidence 1268899999999999999999999999999999999999
Q ss_pred eccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 413 VMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 413 i~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
++|++||||||+|||.+++|+|||||||||||+++ .++||+|+.+|++++.|........|.+|.+||+|||||||||
T Consensus 116 ~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNy 193 (313)
T 3mtc_A 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNY 193 (313)
T ss_dssp GGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCC
T ss_pred ccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEeccccc
Confidence 99999999999999999999999999999999865 6899999999999999975433334678999999999999999
Q ss_pred ccc-CChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCcccccee
Q 006419 493 RIN-LPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 571 (646)
Q Consensus 493 RI~-l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRIL 571 (646)
||+ ++.++++++|++++|+.||++|||+.|+++|++|.||.||+|+|||||||+.|++.|++ ++|+|+||||||||
T Consensus 194 Ri~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydt---s~k~R~PsWcDRIL 270 (313)
T 3mtc_A 194 RIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDT---SEKCRAPAWCDRIL 270 (313)
T ss_dssp CBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEE
T ss_pred cccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCccccc---ccCEecccccceEE
Confidence 996 89999999999999999999999999999999999999999999999999999999985 46899999999999
Q ss_pred ecCCCeEEEeeccc-cCCCCCCCCceeEEEEEEEEcCh
Q 006419 572 SYGKGMRLLNYRRN-EIKMSDHRPVTATYMAEVEVFSP 608 (646)
Q Consensus 572 ~~g~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~V~v~~~ 608 (646)
|++++++++.|.+. ++++||||||+|.|.++++|+.+
T Consensus 271 ~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 271 WKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp EEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred EecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 99999999999985 79999999999999999999864
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=8.5e-85 Score=682.37 Aligned_cols=227 Identities=32% Similarity=0.513 Sum_probs=195.5
Q ss_pred CeEEEEeehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHh
Q 006419 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (646)
Q Consensus 375 ~Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN 454 (646)
.|++|+++|||||+|+||||+++.++|++|++++||||++|++||||||+|+|.+++|+||||||||+||+++ .++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999874 68999
Q ss_pred hcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCccc
Q 006419 455 ADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSE 534 (646)
Q Consensus 455 ~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~E 534 (646)
+|+.+|++++.|.... ......+.+||||||||||||||+++.++++++|++++|+.||++|||++|+++|++|.||.|
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E 236 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSE 236 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBC
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCccccccc
Confidence 9999999999985311 111223467999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcccccCCc-cccCCC---CCCCCCCCccccceeecCC---CeEEEeeccc-cCCCCCCCCceeEEEEEEE
Q 006419 535 GTLIFAPTYKYELNSE-KYYGED---PKVGRRNPSWCDRILSYGK---GMRLLNYRRN-EIKMSDHRPVTATYMAEVE 604 (646)
Q Consensus 535 g~I~FpPTYKy~~~Sd-~Y~~~~---~~~k~R~PAWCDRIL~~g~---~i~~l~Y~s~-e~~~SDHRPV~A~F~v~V~ 604 (646)
|+|+|||||||+.|++ .|+.+. .+.|+|+|||||||||++. .++++.|.+. ++++||||||+|.|.++|.
T Consensus 237 ~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V~ 314 (316)
T 4a9c_A 237 EEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVT 314 (316)
T ss_dssp CCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEECC
T ss_pred CCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEEE
Confidence 9999999999999995 565432 2346799999999999974 5889999974 8999999999999998874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=6.3e-82 Score=668.35 Aligned_cols=316 Identities=34% Similarity=0.590 Sum_probs=280.2
Q ss_pred hHhhhccchhhcccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC--CCCCCEEEEeeeeeeeCCCCcccccCCCCchh
Q 006419 81 RIRRRKSETFRAQYINTKEVRICVGTWNVGGKLPPDDLDIDDWIDM--NEPADIYVLGLQEIVPLTAGNIFGAEDSRPVS 158 (646)
Q Consensus 81 ~~~~~~~e~~r~~y~~~~~~ri~vGTwNV~G~~p~~~~dL~~WL~~--~~~~DIyVlGfQEiV~Lna~~vl~~~d~~~~~ 158 (646)
+|++|..| |+..+++|||||||||||+.|+ .||.+||.. ..+||||||||||||+|++++|++. |+.+..
T Consensus 11 ~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~ 82 (347)
T 1i9z_A 11 ELRKRENE-----FSEHKNVKIFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRR 82 (347)
T ss_dssp HHHHTGGG-----TEEEEEEEEEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHH
T ss_pred HHHHHHHh-----cCCCCCcEEEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHH
Confidence 56666665 9999999999999999998874 579999986 3789999999999999999999976 567788
Q ss_pred hHHHHHHHHhcccCCCCCcccccCCCCCCCCCCCCCCcchhhhhhcccCCCCCCCccccCCCCCCCCcccCCCccccccc
Q 006419 159 KWENIIRDTLNRIRHTTGRVKSLSDPPSPSKFKPSEDIPDIEEEITHESDSDVGEEVYPLDDENNGFDEVNDKPVKMFTN 238 (646)
Q Consensus 159 ~W~~~i~~aLn~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (646)
.|+++|+++|+...+
T Consensus 83 ~w~~~i~~~L~~~~~----------------------------------------------------------------- 97 (347)
T 1i9z_A 83 EWESCVKRLLNGKCT----------------------------------------------------------------- 97 (347)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccc-----------------------------------------------------------------
Confidence 999999999987310
Q ss_pred ccccccccccccCCccccccccccCCCccchhhhhhhcccccCCCCcchhccccccccccccccccCCCCCCCCcccccc
Q 006419 239 YEVSACADSAKLDMPAENNLQRHFSSPKRFDRLYCLRMEESKGNVEAPAVQYNGRLTKMLSGSERIGLSWPEPPLNLLTQ 318 (646)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~r~~~~~~e~~~~~~~~ 318 (646)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccccccccccccccccccCCCCCcccchhHHHHHHhhhHHHHHhhcCCCCeEEEEeehhhhheeeeeeecccc
Q 006419 319 KVLERPNSLKTVKSFKTSNSFRRYSSFKPAVDDMSSELALLAEIDIETLMKRKRRSSYVRMVSKQMVGIFLTIWVRRSLR 398 (646)
Q Consensus 319 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~v~SkqMvGi~L~V~vr~~l~ 398 (646)
.+..|+++.++||+|++|+||+|.++.
T Consensus 98 -----------------------------------------------------~~~~Y~~v~s~~l~g~~L~Vfvr~~~~ 124 (347)
T 1i9z_A 98 -----------------------------------------------------SGPGYVQLRSGQLVGTALMIFCKESCL 124 (347)
T ss_dssp -----------------------------------------------------SSCCEEEEEEEEETTEEEEEEEEGGGG
T ss_pred -----------------------------------------------------CCCceeEEEEeeccceEEEEEEehHhh
Confidence 023789999999999999999999999
Q ss_pred ccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCccc
Q 006419 399 RHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSI 478 (646)
Q Consensus 399 ~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I 478 (646)
++|++|++++|+||++|++||||+|+++|.+++++||||||||+||+.+ ..+||+|+.+|++++.|.. +..|
T Consensus 125 ~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~------~~~i 196 (347)
T 1i9z_A 125 PSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR------GRSI 196 (347)
T ss_dssp GGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG------GCCT
T ss_pred hhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc------cccc
Confidence 9999999999999999999999999999999999999999999999875 4689999999999998852 3468
Q ss_pred CCcceEEEeCccCccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCCcccCCCcccccCCccccCCCCC
Q 006419 479 CDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPK 558 (646)
Q Consensus 479 ~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~~ 558 (646)
.+||++||+|||||||+++.+.++++|++++|+.||++|||+.++++|++|.||.|++|+|+|||||+.+++.|++ +
T Consensus 197 ~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~---s 273 (347)
T 1i9z_A 197 FNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT---S 273 (347)
T ss_dssp TSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC---S
T ss_pred ccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccc---c
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred CCCCCCccccceeecCCCeEEEeeccccCCCCCCCCceeEEEEEEEEcChhhhhhh
Q 006419 559 VGRRNPSWCDRILSYGKGMRLLNYRRNEIKMSDHRPVTATYMAEVEVFSPRKLQRA 614 (646)
Q Consensus 559 ~k~R~PAWCDRIL~~g~~i~~l~Y~s~e~~~SDHRPV~A~F~v~V~v~~~~klqr~ 614 (646)
+++|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.++.
T Consensus 274 ~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 274 DKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp TTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred ccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 6899999999999998 899999999889999999999999999999998876553
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.1e-77 Score=634.70 Aligned_cols=228 Identities=27% Similarity=0.474 Sum_probs=206.6
Q ss_pred CeEEEEeehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHh
Q 006419 375 SYVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRN 454 (646)
Q Consensus 375 ~Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN 454 (646)
.|+++.+.||+|++|+||+|.++.++|+++++++|+||++|++||||+|+|+|.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999864 67999
Q ss_pred hcHHHHHHhcCCCCCCCCCC------CcccCCcceEEEeCccCccccCChHHHHHHHh---hhchhhhhhhhHhHHHHhc
Q 006419 455 ADVHEIHRRTHFRSHSEIGF------PKSICDHERIIWLGDLNYRINLPYEKTRELIS---KKQWSKLAESDQLLRELRK 525 (646)
Q Consensus 455 ~D~~eIl~r~~F~~~~~~~~------P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~---~~~~~~LL~~DQL~~e~~~ 525 (646)
+|+.+|++++.|+....... ...+.+||+|||+|||||||++++++++++|+ .++|+.||++|||+.|+++
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~ 243 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRK 243 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhc
Confidence 99999999999953211111 12345799999999999999999999999986 4789999999999999999
Q ss_pred CCcccCcccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecC---CCeEEEeeccc-cCCCCCCCCceeEEEE
Q 006419 526 GRAFDGWSEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMA 601 (646)
Q Consensus 526 g~vF~gf~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHRPV~A~F~v 601 (646)
|++|.||.|++|+|||||||+.|++.|++ ++|+|+|||||||||++ .+++++.|.+. ++++||||||+|.|.+
T Consensus 244 g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt---s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v 320 (357)
T 2xsw_A 244 GSIFKGFQEPDIHFLPSYKFDIGKDTYDS---TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRV 320 (357)
T ss_dssp TSSSTTCBCCCCCSCCCBCBCTTSSSBCC---STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEE
T ss_pred cccccCccccCCCCCCCccccCCCccccc---cCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEE
Confidence 99999999999999999999999999985 46899999999999995 46999999995 8999999999999999
Q ss_pred EEEEcC
Q 006419 602 EVEVFS 607 (646)
Q Consensus 602 ~V~v~~ 607 (646)
.|+...
T Consensus 321 ~v~~~~ 326 (357)
T 2xsw_A 321 KVRPGR 326 (357)
T ss_dssp ECCCCC
T ss_pred EEecCC
Confidence 997654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.9e-63 Score=510.28 Aligned_cols=205 Identities=22% Similarity=0.430 Sum_probs=184.9
Q ss_pred CeEEEEe--ehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHH
Q 006419 375 SYVRMVS--KQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELK 452 (646)
Q Consensus 375 ~Y~~v~S--kqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~r 452 (646)
.|+++.+ .+|+|++|+||+|.++.++|+++.+ +|++|.+||||+|.++|.+++++||||||||++++.+ ..+
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 4666666 7899999999999999988887765 5778999999999999999999999999999999643 457
Q ss_pred HhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCc
Q 006419 453 RNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGW 532 (646)
Q Consensus 453 RN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf 532 (646)
|++|+..|++++.+ +.++++|||+||||||++++.++++++|++++|..|+++|||..+++ |.+|.||
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f 213 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGW 213 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTC
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-ccccccc
Confidence 99999999876543 34678999999999999999999999999999999999999999999 9999999
Q ss_pred ccCCcccCCCcccccCCccccCCCCCCCCCCCccccceeecC---CCeEEEeeccc-cCCCCCCCCceeEEEEEE
Q 006419 533 SEGTLIFAPTYKYELNSEKYYGEDPKVGRRNPSWCDRILSYG---KGMRLLNYRRN-EIKMSDHRPVTATYMAEV 603 (646)
Q Consensus 533 ~Eg~I~FpPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHRPV~A~F~v~V 603 (646)
.|++|+|+|||||+.++++|+ .+|+|||||||||++ ..++++.|.+. ++.+|||+||+|.|.+++
T Consensus 214 ~e~~i~f~PTYk~~~~~~~y~------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 214 TEPQVTFKPTYKFKPNTDEYD------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp BCCCCCSCCCBCBCTTSSCBC------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred ccCCcCCCCCccccCCCcccc------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 999999999999999999997 369999999999996 47999999997 799999999999998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.79 E-value=7.1e-08 Score=92.05 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=48.9
Q ss_pred ccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 414 MGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 414 ~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
.+....++.+.+.+.+.+..|+++|+||.++... ...|.+++..|++.+.-. .....+|++||||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~~-----------~~~~pvIl~GDfN~ 161 (256)
T 4gz1_A 96 PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQEA-----------PDSTTVIFAGDTNL 161 (256)
T ss_dssp TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHHS-----------CTTSEEEEEEECCC
T ss_pred CcccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhhc-----------cCcceEEEeCccCC
Confidence 3445668889999999999999999999987643 346777888887654210 12245999999996
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.73 E-value=1.3e-07 Score=91.91 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=48.2
Q ss_pred cccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006419 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (646)
Q Consensus 417 lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI 494 (646)
+..+|++.+.+.+.+..|+++|+||.+..... ..|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~--~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCET--EDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCTT--CCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCCh--HHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 45689999999999999999999999875322 357888888876421 035699999999853
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.70 E-value=7.5e-08 Score=92.08 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=45.4
Q ss_pred cccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 417 lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
-+..+.+.+.+.+.+..|.++|+||.+.... ...|..++..++..+.... .......+|++||||.+
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~--------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII--------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH--------HHSTTCEEEEEEECCCC
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh--------hccCCCcEEEeccCCCC
Confidence 4567888899999999999999999987543 3456666666654321100 00123459999999964
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.60 E-value=2e-07 Score=92.95 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=49.3
Q ss_pred cccceEEEEEEEEcCeEEEEEeecCCCCCCC----cCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 417 lGNKGaVsVs~~l~~ts~cFVn~HLaagek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
..++|++.+.+.+.+..|+++|+||.+.... .....|..++..|.+.+.-. . +.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~----~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-----N----IPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----T----CCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-----C----CCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987532 13456888888877643210 0 012346999999997
Q ss_pred cc
Q 006419 493 RI 494 (646)
Q Consensus 493 RI 494 (646)
.-
T Consensus 199 ~~ 200 (301)
T 1zwx_A 199 NY 200 (301)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 10
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.49 E-value=5.8e-07 Score=83.99 Aligned_cols=61 Identities=13% Similarity=0.254 Sum_probs=44.6
Q ss_pred cceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 419 NKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
..+.+.+.+.+.+..|.++++||.+.... ...|..++.+|++.+.= ......+|++||||.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNL 155 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCC
T ss_pred cceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCC
Confidence 35667788888999999999999987543 45677888888775321 012245999999995
No 11
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.49 E-value=5.5e-07 Score=87.76 Aligned_cols=137 Identities=21% Similarity=0.139 Sum_probs=80.4
Q ss_pred cccceEEEEEEEEc--CeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006419 417 IGNKGSVSVSMSIH--QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (646)
Q Consensus 417 lGNKGaVsVs~~l~--~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI 494 (646)
...++++.+.+... +..|.++|+||.+.. ...|..++..|++.+.- .+.. +.+|++||||-
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~----------~~~~-~pvil~GDfN~-- 169 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD----------KIAQ-YPTLLMGDFNA-- 169 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH----------HHHH-SCEEEEEECCC--
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH----------HcCC-CCEEEEeeCCC--
Confidence 45788898999884 678999999999863 35788888888875420 0001 25999999996
Q ss_pred cCChHHHHHHHhhhchhhhhhhhHhHHHHhcCCcccCcccCC-cccCCCcccccCCccccCCCCC-CCCCCCccccceee
Q 006419 495 NLPYEKTRELISKKQWSKLAESDQLLRELRKGRAFDGWSEGT-LIFAPTYKYELNSEKYYGEDPK-VGRRNPSWCDRILS 572 (646)
Q Consensus 495 ~l~~~~v~~lI~~~~~~~LL~~DQL~~e~~~g~vF~gf~Eg~-I~FpPTYKy~~~Sd~Y~~~~~~-~k~R~PAWCDRIL~ 572 (646)
.+...+..++..+ |.. -|.... ....+||.-..+. .+. ...| .|+||.
T Consensus 170 -~~~~~~~~~l~~~-l~d------------------~~~~~~~~~~~~t~~~~~~~------~~~~~~~r----iD~i~~ 219 (257)
T 3l1w_A 170 -ESGEEVHQLVQKK-FQD------------------SKNLATHYGPRGTFQNFTYT------KPWAELEE----IDYIYV 219 (257)
T ss_dssp -CTTSHHHHHHTTT-CEE------------------GGGTSEEESCSCCBCTTCTT------CCGGGCBC----CEEEEE
T ss_pred -CCCcHHHHHhhhh-ccc------------------hhhhhcccCCCCcccCCccc------CCCCCCCc----eeEEEE
Confidence 3333444344321 110 111110 0112232111000 000 1134 799999
Q ss_pred cCCCeEEEeecccc-----CCCCCCCCceeEEEEE
Q 006419 573 YGKGMRLLNYRRNE-----IKMSDHRPVTATYMAE 602 (646)
Q Consensus 573 ~g~~i~~l~Y~s~e-----~~~SDHRPV~A~F~v~ 602 (646)
.+++...+.... ...|||.||.+.|.+.
T Consensus 220 --~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 220 --KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp --ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred --CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 677777776432 3689999999998653
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.43 E-value=5.6e-07 Score=92.32 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=51.0
Q ss_pred ccccceEEEEEEEEcCeEEEEEeecCCCCCCC----cCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccC
Q 006419 416 FIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLN 491 (646)
Q Consensus 416 ~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLN 491 (646)
...+||.+.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-----NIP----KDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-----ccC----CCCeEEEEeECC
Confidence 46789999999999999999999999986531 23568888888887643210 001 124599999999
Q ss_pred ccc
Q 006419 492 YRI 494 (646)
Q Consensus 492 YRI 494 (646)
-.-
T Consensus 217 ~~~ 219 (317)
T 3i41_A 217 VNK 219 (317)
T ss_dssp CCT
T ss_pred CCC
Confidence 743
No 13
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.43 E-value=8.8e-07 Score=93.45 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=60.6
Q ss_pred eEEEEeehhhhheeeeeeeccccccccceeEeEEEeeeccccccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhh
Q 006419 376 YVRMVSKQMVGIFLTIWVRRSLRRHIQNVRVSTVGVGVMGFIGNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNA 455 (646)
Q Consensus 376 Y~~v~SkqMvGi~L~V~vr~~l~~~I~~v~vs~VgtGi~G~lGNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~ 455 (646)
|......+-.+-.+.|++|+.+ ..+....+. ..+.....+++.+.+.+.+..|+++|+||.++... ...|..
T Consensus 174 y~~~~~~~~~~~G~aIlsk~~i----~~~~~~~~~--~~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~--~~~R~~ 245 (362)
T 4gew_A 174 YKIYYSNKGCQYYTAILVSKMF----DVEKHDVIH--FQNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCA 245 (362)
T ss_dssp EEEEESSTTSSSEEEEEEETTE----EEEEEEEEE--CTTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHH
T ss_pred ceEEeCCCCCCceEEEEEeccC----ccccccccC--CCCCcccceEEEEEEEECCEEEEEEEecCCccccc--hhHHHH
Confidence 4444444444555667777532 112222221 11222346788899999999999999999987542 456888
Q ss_pred cHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 456 DVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 456 D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
++..++..+.-.. .......||++||||-+
T Consensus 246 Q~~~l~~~~~~~~--------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 246 QFGFCMDKVREII--------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp HHHHHHHHHHHHH--------HHCTTCEEEEEEECCCC
T ss_pred HHHHHHHHhHhhh--------hcCCCCCeEEeecCCCC
Confidence 8877765432100 00112459999999964
No 14
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.39 E-value=1.7e-06 Score=84.84 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=79.4
Q ss_pred ccceEEEEEEEE--cCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006419 418 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 495 (646)
Q Consensus 418 GNKGaVsVs~~l--~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~ 495 (646)
.+++++.+.+.. .+..|+++|+||.+.. ...|..++..|++.+.= +.....+|++||||-
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~--- 175 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNV--- 175 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSS---
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCC---
Confidence 467888888885 5779999999998753 35677777777664321 001234999999996
Q ss_pred CChHHHHHHHhhhc--hhhhhhhhHhHHHHhcCCcccCcccCCccc--CCCcccccCCccccCCCCCCCCCCCcccccee
Q 006419 496 LPYEKTRELISKKQ--WSKLAESDQLLRELRKGRAFDGWSEGTLIF--APTYKYELNSEKYYGEDPKVGRRNPSWCDRIL 571 (646)
Q Consensus 496 l~~~~v~~lI~~~~--~~~LL~~DQL~~e~~~g~vF~gf~Eg~I~F--pPTYKy~~~Sd~Y~~~~~~~k~R~PAWCDRIL 571 (646)
.+.+.+...+.... |... |.+....+ .+||........ ....| .|+||
T Consensus 176 ~~~~~~~~~l~~~~~~l~d~------------------~~~~~~~~~~~~T~~~~~~~~~------~~~~r----iD~I~ 227 (267)
T 3g6s_A 176 TDASDAYETITTNEFVMKDA------------------YKTAARVTGVDYTFHDFARIPA------EDCEK----IDFIF 227 (267)
T ss_dssp CTTSHHHHHHHSSSSCCEEH------------------HHHCSEEEECSCSBCTTTTSCG------GGCCC----CEEEE
T ss_pred CCCCHHHHHhhcCCcchhhh------------------HhhhccccCCCCCEeCCCCCCC------CCCCc----EeEEE
Confidence 33334443333221 2111 12211111 234322211100 01234 89999
Q ss_pred ecCCCeEEEeeccccC----CCCCCCCceeEEEE
Q 006419 572 SYGKGMRLLNYRRNEI----KMSDHRPVTATYMA 601 (646)
Q Consensus 572 ~~g~~i~~l~Y~s~e~----~~SDHRPV~A~F~v 601 (646)
..+ +++...+..... ..|||.||.|....
T Consensus 228 ~s~-~~~~~~~~v~~~~~~~~~SDH~PV~a~~~~ 260 (267)
T 3g6s_A 228 VTP-QVLVKSCEIPAEVPEALLSDHNPQLADLEL 260 (267)
T ss_dssp ECT-TSEEEEEEECCCCSSSCCCSBCCEEEEEEE
T ss_pred eCC-CceEEEEEEecCCCCCCCCCcccEEEEEEe
Confidence 975 377777765432 46999999997654
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.36 E-value=2.6e-06 Score=82.74 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=45.6
Q ss_pred ccceEEEEEEEEcCeEEEEEeecCCCCCCCcC---HHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCccc
Q 006419 418 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGD---ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRI 494 (646)
Q Consensus 418 GNKGaVsVs~~l~~ts~cFVn~HLaagek~~d---~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI 494 (646)
.+++++.+.+.+.+..|+++|+||.++....+ ...|...+..|.+.+.-. ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~----------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE----------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH----------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh----------hhCCCCEEEEeECCCCC
Confidence 46789999999988999999999998764321 234666666665432100 01134599999999643
No 16
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.31 E-value=2.9e-06 Score=84.54 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=47.9
Q ss_pred cccceEEEEEEEEcCeEEEEEeecCCCCCCC----cCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 417 IGNKGSVSVSMSIHQTLFCFVCAHLTSGEKD----GDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 417 lGNKGaVsVs~~l~~ts~cFVn~HLaagek~----~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
..++|++.+.+.+.+..|.++|+||.+.... .....|..++..|.+.+.-. ..+ ....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-----~~~----~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK-----NIP----NNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH-----TCC----TTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh-----cCC----CCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13456888888876543210 001 1245999999997
Q ss_pred cc
Q 006419 493 RI 494 (646)
Q Consensus 493 RI 494 (646)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=1.1e-05 Score=81.45 Aligned_cols=62 Identities=13% Similarity=0.040 Sum_probs=43.0
Q ss_pred ccceEEEEEEEE--cCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 418 GNKGSVSVSMSI--HQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 418 GNKGaVsVs~~l--~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
-+++++.+.|.. .+..|+++|+||.+.. ...|.+++..|++.+.-. .. . ....+|++||||-
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~--~~---~----~~~pvIl~GDfN~ 181 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKEL--GR---G----KNLPAILTGDFNV 181 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHT--TT---T----SCCCEEEEEECSS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHH--hc---C----CCCcEEEEEeCCC
Confidence 367788888884 5789999999998642 357888888877653210 00 0 1235999999996
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.61 E-value=0.00044 Score=65.58 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=35.0
Q ss_pred EEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 422 SVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 422 aVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
.+.+.+.+.+..|.++|+|++++.. . | -+.++++.+.- . ....+|++||||-.
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~-~--~~~~l~~~l~~-------~-----~~~~~Il~GDFN~~ 149 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----P-R--FIKQVLSDLQR-------D-----LDSHTLIMGDFNTP 149 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----H-H--HHHHHHHHTTT-------T-----CCTTEEEEEECSSC
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----H-H--HHHHHHHHHHh-------c-----cCCCEEEEccCCCC
Confidence 5677788888999999999998643 1 2 13344443221 0 01359999999974
No 19
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.58 E-value=0.00026 Score=68.05 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=31.0
Q ss_pred EEEEEeecCCCCCCCcC--HHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcccc
Q 006419 433 LFCFVCAHLTSGEKDGD--ELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYRIN 495 (646)
Q Consensus 433 s~cFVn~HLaagek~~d--~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~ 495 (646)
.|.++|+||.++...+. ...|.+.+..|.+.+.- . +.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 69999999998765322 22354555555432210 0 001245999999997443
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.47 E-value=0.00035 Score=67.86 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=40.1
Q ss_pred cceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 419 NKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
..|.+.+.+.+.+..|.++|+|++.+.. ...+.+.+..+++.+ ....+|++||||-.
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~---------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM---------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT---------------CSSSEEEEEECCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh---------------CCCcEEEEeccccC
Confidence 4667888888888889999999998753 123455666666531 11349999999963
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=97.46 E-value=0.00019 Score=70.98 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=23.2
Q ss_pred ccceeecCCCe-EEEeeccc-cCCCCCCCCceeEEE
Q 006419 567 CDRILSYGKGM-RLLNYRRN-EIKMSDHRPVTATYM 600 (646)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~-e~~~SDHRPV~A~F~ 600 (646)
.|+||....-. +...+... +...|||.||.+.|.
T Consensus 249 ID~i~~s~~~~~~v~~~~v~~~~~~SDH~pv~~~l~ 284 (285)
T 2o3h_A 249 LDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA 284 (285)
T ss_dssp CEEEEECGGGGGGEEEEEECTTCCSSSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhhheEeeccCCCCCeecEEEEec
Confidence 89999875321 13444433 456899999999885
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=97.16 E-value=0.0019 Score=70.84 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=23.3
Q ss_pred ccceeecCCCe-EEEeecc-ccCCCCCCCCceeEEEE
Q 006419 567 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 601 (646)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~v 601 (646)
.|+||....-. ++..+.. .+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 89999864321 2333332 34679999999998853
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=97.12 E-value=0.00051 Score=69.97 Aligned_cols=37 Identities=35% Similarity=0.480 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 47788999998432111236677743 35686 889998
No 24
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=96.98 E-value=0.00028 Score=67.91 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=24.7
Q ss_pred ccceeecCCCeE--EEeeccc-cCCCCCCCCceeEEEEE
Q 006419 567 CDRILSYGKGMR--LLNYRRN-EIKMSDHRPVTATYMAE 602 (646)
Q Consensus 567 CDRIL~~g~~i~--~l~Y~s~-e~~~SDHRPV~A~F~v~ 602 (646)
.|+||.... +. ...+... +...|||.||.+.|.+.
T Consensus 220 ID~i~~s~~-~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 220 IDYQMVTPE-LAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CEEEEECHH-HHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEECHH-HHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 899998742 22 3444433 57899999999998653
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.79 E-value=0.00041 Score=79.38 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=0.0
Q ss_pred CeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcC-CCCCCCCCCCcccCCcceEEEeCccCccccCChHHHHHHHhhh
Q 006419 431 QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKSICDHERIIWLGDLNYRINLPYEKTRELISKK 508 (646)
Q Consensus 431 ~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~~ 508 (646)
+..|+++|+||.++...+ ..|......|++.+. +........+..-.....||++||||- .+.+.+..++..+
T Consensus 546 g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs---~P~s~~~~~l~~~ 619 (727)
T 4b8c_D 546 GDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS---YINSAVYELINTG 619 (727)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCC---CCCCcceEeeecC
Confidence 668999999999864322 246666666655432 100000000000011235999999996 4555555555443
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.77 E-value=0.00038 Score=68.66 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=34.6
Q ss_pred ceEEEEEEEEc---CeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 420 KGSVSVSMSIH---QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 420 KGaVsVs~~l~---~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
.+.+.+.|... +..|.+||+||.+... .++.+.+.+++..+. . ......+|++||||-.
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~-~----------~~~~~~vil~GDfN~~ 172 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ-Q----------KWHLNDVMLMGDFNAD 172 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH-H----------HHCCCCEEEEEECCCS
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH-H----------hCCCCCEEEEecCCCC
Confidence 55667777765 5689999999997532 112223333332210 0 0012359999999974
No 27
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.0043 Score=59.80 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred ccceeecCCCe-EEEeeccc-----cCCCCCCCCceeEEE
Q 006419 567 CDRILSYGKGM-RLLNYRRN-----EIKMSDHRPVTATYM 600 (646)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~-----e~~~SDHRPV~A~F~ 600 (646)
.|+||....-. +...+... ....|||.||.+.|.
T Consensus 217 ID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 217 GDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 89999864211 12233221 246899999999875
No 28
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=96.40 E-value=0.0031 Score=61.77 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=23.9
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999422111147788854 35686 788998
No 29
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=95.85 E-value=0.035 Score=56.85 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=37.4
Q ss_pred cceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 419 NKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
..|.+.|+ +.+ +.|++.||.+.... .|.+.+..|... |.... ..|. ..|...|++||||-
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN~ 180 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFNR 180 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECSS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCCC
Confidence 67887774 666 99999999998522 355666666653 21000 0010 02346999999994
No 30
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.60 E-value=0.036 Score=59.64 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=45.1
Q ss_pred CeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcC-CCCCCCCCCCcc--cCCcceEEEeCccCccccCChHHHHHHHhh
Q 006419 431 QTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTH-FRSHSEIGFPKS--ICDHERIIWLGDLNYRINLPYEKTRELISK 507 (646)
Q Consensus 431 ~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~-F~~~~~~~~P~~--I~dhD~vfw~GDLNYRI~l~~~~v~~lI~~ 507 (646)
+..|+++|+||..+... ...|..++..|++.+. |........+.. -...-.||++||||- .+...+.+++..
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs---~P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNS---LPDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSC---CTTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCC---CCCCHHHHHHhc
Confidence 45799999999997543 3468888887776532 210000000000 001224999999997 778888888876
Q ss_pred hc
Q 006419 508 KQ 509 (646)
Q Consensus 508 ~~ 509 (646)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 64
No 31
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=95.36 E-value=0.054 Score=53.49 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|.||||||.-...+. |.+||.. ..||| |++||+
T Consensus 8 mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred ceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 67899999995322222 7889854 34587 778997
No 32
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=89.94 E-value=0.056 Score=51.11 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=23.3
Q ss_pred ccceeecCCCeEEEeecc--------ccCCCCCCCCceeEEEE
Q 006419 567 CDRILSYGKGMRLLNYRR--------NEIKMSDHRPVTATYMA 601 (646)
Q Consensus 567 CDRIL~~g~~i~~l~Y~s--------~e~~~SDHRPV~A~F~v 601 (646)
.|+||+.+. ++...+.. .....|||.||.|.|++
T Consensus 215 iD~I~~~~~-~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fsa 256 (256)
T 4fva_A 215 FDRLYWSGP-LDKVKFTLEGRQRIRSCLCFPSDHWAINATFFA 256 (256)
T ss_dssp CEEEEEESS-CCEEEEEEECCSCCTTTCSCSCSSCEEEEEEEC
T ss_pred eEEEEEcCC-ceeeEEEEEeeEecCCCCCCcCcccCEEEEEcC
Confidence 799999863 44444432 12235999999999974
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=87.34 E-value=0.11 Score=48.02 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=23.0
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 46678999998532210 124455533 35795 889998
No 34
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=83.81 E-value=0.28 Score=51.48 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=25.8
Q ss_pred eeEEEEEeeeeCCCCCCCCCC-----CcccccCCCCCCCEEEEeeeee
Q 006419 98 KEVRICVGTWNVGGKLPPDDL-----DIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 98 ~~~ri~vGTwNV~G~~p~~~~-----dL~~WL~~~~~~DIyVlGfQEi 140 (646)
...++.|-||||+|.. .... -|.+||.. ..||| |+|||+
T Consensus 116 ~~~~lkVlSWNI~Gl~-~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLD-GRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTCEEEEEEEECCTTC-CTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCeEEEEEEEeCCCC-CcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 3456788899999952 2211 25567743 45696 899998
No 35
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=83.37 E-value=0.26 Score=46.34 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=23.7
Q ss_pred ccceeecCCC--eEEEeec-----c--ccCCCCCCCCceeEEEE
Q 006419 567 CDRILSYGKG--MRLLNYR-----R--NEIKMSDHRPVTATYMA 601 (646)
Q Consensus 567 CDRIL~~g~~--i~~l~Y~-----s--~e~~~SDHRPV~A~F~v 601 (646)
.|+||+++.. +....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 7999998642 4443432 1 12346999999999975
No 36
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=81.09 E-value=0.17 Score=49.83 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=35.0
Q ss_pred ccceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 418 GNKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 418 GNKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
...|++.|.+.+ ..|.++|+|++.+... ..+.+.+..++..+. ...+|++||||--
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~---------------~~~~Ii~GDfN~~ 131 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR---------------GARVVICADTNAH 131 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT---------------TSCEEEEEECCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC---------------CCcEEEEEecccc
Confidence 346776666543 5688999999998642 233344444443210 1249999999964
No 37
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=78.77 E-value=0.24 Score=47.30 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.1
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5688999998422111146777753 45797 788999
No 38
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=78.43 E-value=0.23 Score=47.68 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=22.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.|.||||+|... .-..|.+||.. ..||| |||||+
T Consensus 2 rv~t~Nv~~~~~-~~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 2 KFVSFNINGLRA-RPHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp EEEEEECSCGGG-CHHHHHHHHHH-HCCSE--EEEECC
T ss_pred EEEEEehhHHHH-HHHHHHHHHHH-cCCCE--EEEEec
Confidence 588999998522 11135556533 45685 899998
No 39
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=77.29 E-value=0.19 Score=48.93 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=22.9
Q ss_pred ccceeecCCCe-EEEeecc-ccCCCCCCCCceeEEEE
Q 006419 567 CDRILSYGKGM-RLLNYRR-NEIKMSDHRPVTATYMA 601 (646)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHRPV~A~F~v 601 (646)
.|+||....-. +...... .+...|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 89999865322 2222222 24578999999998853
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=72.31 E-value=0.43 Score=44.72 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=22.2
Q ss_pred ccceeecCCCe-EEEeeccccCCCCCCCCceeEE
Q 006419 567 CDRILSYGKGM-RLLNYRRNEIKMSDHRPVTATY 599 (646)
Q Consensus 567 CDRIL~~g~~i-~~l~Y~s~e~~~SDHRPV~A~F 599 (646)
.|+||....-. +...+.......|||.||.+.|
T Consensus 204 ID~i~~s~~~~~~~~~~~v~~~~~SDH~pv~~~l 237 (238)
T 1vyb_A 204 IDHIVGSKALLSKCKRTEIITNYLSDHSAIKLEL 237 (238)
T ss_dssp CEEEEEEGGGGGGEEEEEEECCSSSSSCEEEEEE
T ss_pred eEEEEeCHHHHhhhhhceeecCCCCCcccEEEEe
Confidence 89999875321 1333333345789999999876
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=71.04 E-value=0.57 Score=44.78 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=22.4
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|.||||+|..... ..|.+|+.. ..||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~~-~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLKE-NKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHHH-HCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHhh-cCCCE--EEEEEe
Confidence 568899999853221 134555532 35686 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=70.67 E-value=0.42 Score=46.83 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=24.2
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 47789999998422111136667643 35685 889999
No 43
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=68.86 E-value=1.9 Score=41.62 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=22.9
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~~~dL~~WL~---------~~~~~DIyVlGfQEi 140 (646)
.+.|.||||.+..+..+ -..|-. ....||| |||||+
T Consensus 3 ~l~v~t~Ni~~~~~~~~--~~~~~~r~~~i~~~i~~~~~DI--v~LQEv 47 (267)
T 3g6s_A 3 DVRWATFNIRYDNPQDS--LNNWQYRKDRVCQFIKDHELDI--VGMQEV 47 (267)
T ss_dssp EEEEEEEECCCCCGGGG--GGSGGGTHHHHHHHHHHTTCSE--EEEESB
T ss_pred cEEEEEEEeccCCCCcc--ccCHHHHHHHHHHHHHHcCCCE--EEEecC
Confidence 47789999998654322 123322 1245786 889999
No 44
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=68.52 E-value=0.5 Score=47.77 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=30.6
Q ss_pred eEEEEEeecCCCCCCCc-CHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCcc
Q 006419 432 TLFCFVCAHLTSGEKDG-DELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNYR 493 (646)
Q Consensus 432 ts~cFVn~HLaagek~~-d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNYR 493 (646)
..|.++|+||.++.... ....|.+.+..|...+.- +.....+|++||||-.
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~ 214 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVA 214 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCC
Confidence 46899999998765321 123465665665543210 0011459999999964
No 45
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=67.77 E-value=1.6 Score=44.65 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=27.8
Q ss_pred EEEeeeeCCCCCCCC----CCCcccccCCCCCCCEEEEeeeeeeeC
Q 006419 102 ICVGTWNVGGKLPPD----DLDIDDWIDMNEPADIYVLGLQEIVPL 143 (646)
Q Consensus 102 i~vGTwNV~G~~p~~----~~dL~~WL~~~~~~DIyVlGfQEiV~L 143 (646)
+.|+|||+-|....+ +..+..||..+..||| |.+||+--+
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 348999999954333 1146778877678898 667999443
No 46
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=67.62 E-value=4.4 Score=41.51 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=38.5
Q ss_pred cceEEEEEEEEcCeEEEEEeecCCCCCCCcCHHHHhhcHHHHHHhcCCCCCCCCCCCcccCCcceEEEeCccCc
Q 006419 419 NKGSVSVSMSIHQTLFCFVCAHLTSGEKDGDELKRNADVHEIHRRTHFRSHSEIGFPKSICDHERIIWLGDLNY 492 (646)
Q Consensus 419 NKGaVsVs~~l~~ts~cFVn~HLaagek~~d~~rRN~D~~eIl~r~~F~~~~~~~~P~~I~dhD~vfw~GDLNY 492 (646)
....++|++ . .+.|.+.||.++..+ .|.+.+..|... |.. .|..+-..--.+++||||-
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr 188 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNR 188 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSS
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCC
Confidence 677777776 2 488999999998433 378888888875 321 1110000024899999996
No 47
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=66.82 E-value=1.1 Score=42.82 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=24.1
Q ss_pred cccceeecCCCeEEEeeccc-----cCCCCCCCCceeEEE
Q 006419 566 WCDRILSYGKGMRLLNYRRN-----EIKMSDHRPVTATYM 600 (646)
Q Consensus 566 WCDRIL~~g~~i~~l~Y~s~-----e~~~SDHRPV~A~F~ 600 (646)
-.|+||..+ ++....+... ....|||.||.+.|.
T Consensus 227 riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 227 RLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp CCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred eeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 389999864 4555555432 256799999999885
No 48
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=65.87 E-value=1.1 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=21.8
Q ss_pred EEEeeeeCCCCCCCCCC--------CcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDL--------DIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~--------dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|.||||.+..+.... -|.++|. ...||| |||||+
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 44 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLIN-FHDWSL--CCIQEV 44 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHH-HHCCSE--EEEEEE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 35889999986443211 0223332 235687 889999
No 49
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=65.57 E-value=1.5 Score=44.96 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=25.7
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPDD----LDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~~----~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.+.|+|||+-|..++.+ .+|..-+....++|| |++||+
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 46789999999655332 245553333456898 788999
No 50
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=65.31 E-value=0.59 Score=44.44 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 103 CVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 103 ~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.|.||||+|-.... ..|.+|+.. ..||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~~-~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLAD-NPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHHS-SCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHHh-cCCCE--EEEEee
Confidence 57899999832111 135556643 45787 788998
No 51
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=64.65 E-value=0.62 Score=51.03 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=24.3
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPD--D-LDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~--~-~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778899999932110 0 136777744 34686 889998
No 52
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=61.19 E-value=0.71 Score=44.38 Aligned_cols=35 Identities=20% Similarity=-0.033 Sum_probs=24.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006419 102 ICVGTWNVGGKLPPDDLDIDDWIDMNEPADIYVLGLQEI 140 (646)
Q Consensus 102 i~vGTwNV~G~~p~~~~dL~~WL~~~~~~DIyVlGfQEi 140 (646)
+.|.||||+|..... ..|.+|+.. ..||| |++||+
T Consensus 20 lri~s~Nv~~~~~~~-~~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 20 YRVLQANLQRKKLAT-AELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp EEEEEEECTTCHHHH-HHHHHHHHH-HTCSE--EEEESC
T ss_pred eeeeeeeccccHHHH-HHHHHHHhh-cCCCE--EEEEcc
Confidence 778899999842211 146677744 45686 899998
No 53
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=59.98 E-value=1.3 Score=44.10 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=23.3
Q ss_pred eEEEEEeeeeCCCCCCCCCCCcccccC---------CCCCCCEEEEeeeee
Q 006419 99 EVRICVGTWNVGGKLPPDDLDIDDWID---------MNEPADIYVLGLQEI 140 (646)
Q Consensus 99 ~~ri~vGTwNV~G~~p~~~~dL~~WL~---------~~~~~DIyVlGfQEi 140 (646)
.-.|.|.||||....+........|-. ....||| |||||+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DI--v~LQEv 52 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDI--FGTQEC 52 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSE--EEEESB
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCE--EEEeCC
Confidence 346889999997644322100123411 1346785 899999
No 54
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=54.71 E-value=8.3 Score=37.68 Aligned_cols=15 Identities=47% Similarity=0.481 Sum_probs=13.2
Q ss_pred CCCCCCCCceeEEEE
Q 006419 587 IKMSDHRPVTATYMA 601 (646)
Q Consensus 587 ~~~SDHRPV~A~F~v 601 (646)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999865
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=46.51 E-value=7.2 Score=38.13 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.5
Q ss_pred CCCCCCCCceeEEEE
Q 006419 587 IKMSDHRPVTATYMA 601 (646)
Q Consensus 587 ~~~SDHRPV~A~F~v 601 (646)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 578999999999864
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=33.63 E-value=5.7 Score=40.14 Aligned_cols=37 Identities=11% Similarity=-0.128 Sum_probs=21.8
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc---------CCCCCCCEEEEeeeee
Q 006419 101 RICVGTWNVGGKLPPDDLDIDDWI---------DMNEPADIYVLGLQEI 140 (646)
Q Consensus 101 ri~vGTwNV~G~~p~~~~dL~~WL---------~~~~~~DIyVlGfQEi 140 (646)
.|.|.||||.+-....+.+ ..|- .....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 4778899999842211101 0221 12356786 899999
Done!