BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006420
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
+QD+Y +LG+S A E +IRK+Y+ A+KYHPD+ E
Sbjct: 2 KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQGDKEA--------------EA 44
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
FK ++EAYEVL D KR YD
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYD 66
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%)
Query: 590 WSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFRSKKSA 645
W+ +++ L QALKT+P T +RW+++A AVPG+T C K++ L E ++KK+A
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAA 61
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509
PW+ EE +LL + ++ YP T RW+ I+E + GR+ ++ +K K ++
Sbjct: 5 PWTTEEQKLLEQALKTYPVNTPERWKKIAEAV-PGRTKKDCMKRYKELV 52
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
+QD+Y +LG+S A E +IRK+Y+ A+KYHPD+ E
Sbjct: 2 KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQGDKEA--------------EA 44
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
FK ++EAYEVL D KR YD
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYD 66
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
+QD+Y +LG+S A E +IRK+Y+ A+KYHPD+ E
Sbjct: 2 KQDYYEILGVSKT---AEEREIRKAYKRLAMKYHPDRNQGDKEA--------------EA 44
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
FK ++EAYEVL D KR YD
Sbjct: 45 KFKEIKEAYEVLTDSQKRAAYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
+D+Y LGL+ A++++I+++YR AL+YHPDK E
Sbjct: 3 KDYYQTLGLARG---ASDEEIKRAYRRQALRYHPDKNKEPGA---------------EEK 44
Query: 154 FKAVQEAYEVLIDPVKRRIYDSTDE 178
FK + EAY+VL DP KR I+D E
Sbjct: 45 FKEIAEAYDVLSDPRKREIFDRYGE 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 39/78 (50%), Gaps = 20/78 (25%)
Query: 97 YALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKA 156
Y LLG+S A E +++K YR+ ALKYHPDK FK
Sbjct: 11 YDLLGVSPS---ANEQELKKGYRKAALKYHPDKPTGDTEK-----------------FKE 50
Query: 157 VQEAYEVLIDPVKRRIYD 174
+ EA+E+L DP KR IYD
Sbjct: 51 ISEAFEILNDPQKREIYD 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 18/80 (22%)
Query: 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
D+Y +LG+S A+++ ++K+YR ALK+HPDK F
Sbjct: 8 DYYEILGVSRG---ASDEDLKKAYRRLALKFHPDKNHAPGATEA---------------F 49
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
KA+ AY VL +P KR+ YD
Sbjct: 50 KAIGTAYAVLSNPEKRKQYD 69
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 17/78 (21%)
Query: 97 YALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKA 156
Y +LGL AT D I+KSYR+ ALKYHPDK FK
Sbjct: 20 YHVLGLDKN---ATSDDIKKSYRKLALKYHPDKNPDNPEAADK--------------FKE 62
Query: 157 VQEAYEVLIDPVKRRIYD 174
+ A+ +L D KR IYD
Sbjct: 63 INNAHAILTDATKRNIYD 80
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 16/80 (20%)
Query: 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
D+Y +L + A+ + I+K+YR+ ALK+HPDK E F
Sbjct: 10 DYYEVLDVPRQ---ASSEAIKKAYRKLALKWHPDKNPENKEEA-------------ERRF 53
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
K V EAYEVL D KR IYD
Sbjct: 54 KQVAEAYEVLSDAKKRDIYD 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 16/80 (20%)
Query: 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
++Y +LG+ + A+ + I+K+YR+ AL++HPDK E F
Sbjct: 10 NYYEVLGV---QASASPEDIKKAYRKLALRWHPDKNPDNKEEA-------------EKKF 53
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
K V EAYEVL D KR +YD
Sbjct: 54 KLVSEAYEVLSDSKKRSLYD 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 20/83 (24%)
Query: 96 HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFK 155
+Y +LG+ + AT+++++K+YR+ ALKYHPDK FK
Sbjct: 8 YYDVLGV---KPNATQEELKKAYRKLALKYHPDKNPNEGEK-----------------FK 47
Query: 156 AVQEAYEVLIDPVKRRIYDSTDE 178
+ +AYEVL D KR +YD E
Sbjct: 48 QISQAYEVLSDAKKRELYDKGGE 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 96 HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFK 155
+Y +LG+ + A++++++K+YR+ ALK+HPDK FK
Sbjct: 10 YYDVLGV---KPDASDNELKKAYRKMALKFHPDKNPDGAE-----------------QFK 49
Query: 156 AVQEAYEVLIDPVKRRIYDSTDE 178
+ +AYEVL D KR+IYD E
Sbjct: 50 QISQAYEVLSDEKKRQIYDQGGE 72
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 109 ATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFKAVQEAYEVLIDPV 168
A+ D I+K+YR AL++HPDK E FK V EAYEVL D
Sbjct: 14 ASADDIKKAYRRKALQWHPDKNPDNKEFA-------------EKKFKEVAEAYEVLSDKH 60
Query: 169 KRRIYD 174
KR IYD
Sbjct: 61 KREIYD 66
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 18/80 (22%)
Query: 96 HYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHFK 155
+Y +LG+ A+E QI+K++ + A+KYHPDK E F+
Sbjct: 9 YYDILGVPKS---ASERQIKKAFHKLAMKYHPDKNKSPDA---------------EAKFR 50
Query: 156 AVQEAYEVLIDPVKRRIYDS 175
+ EAYE L D +R+ YD+
Sbjct: 51 EIAEAYETLSDANRRKEYDT 70
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
D+Y +LG+ A++ +I+K+Y + A KYHPD + F
Sbjct: 8 DYYQILGVPRN---ASQKEIKKAYYQLAKKYHPD--------------TNKDDPKAKEKF 50
Query: 155 KAVQEAYEVLIDPVKRRIYDS 175
+ EAYEVL D VKR+ YD+
Sbjct: 51 SQLAEAYEVLSDEVKRKQYDA 71
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 582 SSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFR 640
S+ WSA + +A +AL + K+T RW VA AV G+T + KK + L E+ +
Sbjct: 3 STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
+D+YA++G+ L T I+ +YR A KYHPD E
Sbjct: 5 KDYYAIMGVKPTDDLKT---IKTAYRRLARKYHPD---------------VSKEPDAEAR 46
Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
FK V EA+EVL D +R YD
Sbjct: 47 FKEVAEAWEVLSDEQRRAEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
+D+YA+LG+ L T I+ +YR A KYHPD E
Sbjct: 28 KDYYAILGVQPTDDLKT---IKTAYRRLARKYHPD---------------VSKENDAEAK 69
Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
FK + EA+EVL D +R YD
Sbjct: 70 FKDLAEAWEVLKDEQRRAEYD 90
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
Q+ Y+LLG+S A+ +IR+++++ ALK HPDK
Sbjct: 2 QNFYSLLGVSKT---ASSREIRQAFKKLALKLHPDKNPNNPNA--------------HGD 44
Query: 154 FKAVQEAYEVLIDPVKRRIYDSTDE 178
F + AYEVL D R+ YD E
Sbjct: 45 FLKINRAYEVLKDEDLRKKYDKYGE 69
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
Q+ Y+LLG+S A+ +IR+++++ ALK HPDK
Sbjct: 21 QNFYSLLGVSKT---ASSREIRQAFKKLALKLHPDKNPNNPNA--------------HGD 63
Query: 154 FKAVQEAYEVLIDPVKRRIYDSTDE 178
F + AYEVL D R+ YD E
Sbjct: 64 FLKINRAYEVLKDEDLRKKYDKYGE 88
>pdb|2CQQ|A Chain A, Solution Structure Of Rsgi Ruh-037, A Myb Dna-Binding
Domain In Human Cdna
Length = 72
Score = 35.8 bits (81), Expect = 0.067, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 462 WSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508
W++E++ L + M K+P GT RWE I+ + GRSV ++ K +
Sbjct: 11 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQL 55
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 580 GVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKEN 638
G S SS W+ L +++ FP T RWE++A + G++V K LK++
Sbjct: 1 GSSGSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58
>pdb|2CQR|A Chain A, Solution Structure Of Rsgi Ruh-043, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 585 SDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635
S ++ W+ Q++ L AL+ +P+ +S W+++A VP K+ C ++ L
Sbjct: 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYI 492
E+PW++ + +LL +Q+YP+G+S W+ I+ +
Sbjct: 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV 51
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETHF 154
D Y +LG+S A++ I+K+Y++ A ++HPDK E F
Sbjct: 18 DPYRVLGVSRT---ASQADIKKAYKKLAREWHPDKNKDPGA---------------EDRF 59
Query: 155 KAVQEAYEVLIDPVKRRIYD 174
+ +AYE+L + KR YD
Sbjct: 60 IQISKAYEILSNEEKRTNYD 79
>pdb|1WGX|A Chain A, Solution Structure Of Rsgi Ruh-022, A Myb Dna-Binding
Domain In Human Cdna
Length = 73
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 580 GVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF 639
G S SS W+ + + L A + PK W VA AV ++ +C++K+ EN
Sbjct: 1 GSSGSSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYM---ENP 57
Query: 640 RSKKS 644
R K S
Sbjct: 58 RGKGS 62
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDK 129
N +D + +LG+ + A+ D++ K+YR+ A+ HPDK
Sbjct: 25 NSKDSWDMLGV---KPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIETH 153
+D+Y LLG L ++ +QI ++ AL+ HPDK +ET
Sbjct: 20 EDYYTLLGCDEL---SSVEQILAEFKVRALECHPDKH-------------PENPKAVET- 62
Query: 154 FKAVQEAYEVLIDPVKRRIYD 174
F+ +Q+A E+L + R YD
Sbjct: 63 FQKLQKAKEILTNEESRARYD 83
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 196 FGPAFTRNGRWSANQLVPSLGDENTPLKEVDNF 228
+G +F +NG +AN L PS+G+ NT + E F
Sbjct: 938 YGWSFPKNGGDAANILTPSVGNPNTGIPETKAF 970
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
++D+Y +LG+ + A + +I K+YR+ AL++HPD E
Sbjct: 381 KRDYYKILGV---KRNAKKQEIIKAYRKLALQWHPDN-----------FQNEEEKKKAEK 426
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
F + A EVL DP R+ +D
Sbjct: 427 KFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQXXXXXXXXXXXXXXXXXXXIET 152
++D+Y +LG+ + A + +I K+YR+ AL++HPD E
Sbjct: 381 KRDYYKILGV---KRNAKKQEIIKAYRKLALQWHPDN-----------FQNEEEKKKAEK 426
Query: 153 HFKAVQEAYEVLIDPVKRRIYD 174
F + A EVL DP R+ +D
Sbjct: 427 KFIDIAAAKEVLSDPEMRKKFD 448
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 448 GSTLLKSFEKKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISE 490
GS + + KK+K W+ EE E ++ G+QKY +G W IS+
Sbjct: 1 GSHMTTNITKKQK-WTVEESEWVKAGVQKYGEGN---WAAISK 39
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 579 NGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635
N ++ S W+A ++ LVQ ++ E ++W +A PG+T I K ++ ++
Sbjct: 54 NYLAPSISHTPWTAEEDALLVQKIQ----EYGRQWAIIAKFFPGRTDIHIKNRWVTI 106
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 580 GVSSSSDQDAWSAVQERALVQALKTFPKE--TSQRWERVATAVPGKTVIQC 628
G S SS W+ +++ L Q L +P E S+RW+++A + +T Q
Sbjct: 1 GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQV 51
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYI 492
PW+KEE + L K +QKY +RW VI++++
Sbjct: 5 PWTKEEDQRLIKLVQKY---GPKRWSVIAKHL 33
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 108 LATEDQIRKSYRETALKYHPDK 129
L T +Q++K YR+ L HPDK
Sbjct: 128 LVTPEQVKKVYRKAVLVVHPDK 149
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 108 LATEDQIRKSYRETALKYHPDK 129
L T +Q++K YR+ L HPDK
Sbjct: 60 LVTPEQVKKVYRKAVLVVHPDK 81
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 108 LATEDQIRKSYRETALKYHPDK 129
L T +Q++K YR+ L HPDK
Sbjct: 47 LVTPEQVKKVYRKAVLVVHPDK 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,410,752
Number of Sequences: 62578
Number of extensions: 585224
Number of successful extensions: 1201
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 62
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)