Query 006420
Match_columns 646
No_of_seqs 481 out of 2584
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 23:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5269 ZUO1 Ribosome-associat 100.0 1.7E-57 3.6E-62 451.6 24.4 304 90-408 39-349 (379)
2 KOG0717 Molecular chaperone (D 100.0 1.5E-36 3.3E-41 321.9 20.8 202 90-307 4-233 (508)
3 COG0484 DnaJ DnaJ-class molecu 99.9 2.9E-22 6.2E-27 213.2 10.0 96 91-203 1-102 (371)
4 KOG0713 Molecular chaperone (D 99.8 3.9E-20 8.4E-25 192.4 6.2 70 92-178 14-83 (336)
5 PLN03212 Transcription repress 99.7 1.2E-17 2.5E-22 167.6 12.5 101 458-637 24-124 (249)
6 PRK14288 chaperone protein Dna 99.7 3.7E-18 8.1E-23 185.1 7.4 69 93-178 2-70 (369)
7 KOG0712 Molecular chaperone (D 99.7 6.4E-18 1.4E-22 177.8 6.3 68 92-179 2-69 (337)
8 PLN03091 hypothetical protein; 99.7 2E-16 4.4E-21 169.3 12.8 101 458-637 13-113 (459)
9 PTZ00037 DnaJ_C chaperone prot 99.7 4.7E-17 1E-21 178.8 7.2 89 90-201 24-112 (421)
10 PRK14286 chaperone protein Dna 99.7 7.2E-17 1.6E-21 175.3 7.7 69 93-178 3-71 (372)
11 KOG0048 Transcription factor, 99.7 2.5E-16 5.4E-21 161.3 10.3 96 459-633 9-104 (238)
12 PRK14287 chaperone protein Dna 99.6 1.8E-16 4E-21 172.1 8.0 68 94-179 4-71 (371)
13 PRK14276 chaperone protein Dna 99.6 1.6E-16 3.4E-21 173.2 7.3 68 93-178 3-70 (380)
14 PRK14296 chaperone protein Dna 99.6 1.5E-16 3.2E-21 172.8 6.0 68 93-178 3-70 (372)
15 PRK14285 chaperone protein Dna 99.6 2.7E-16 5.8E-21 170.5 7.7 68 94-178 3-70 (365)
16 PRK14282 chaperone protein Dna 99.6 3.9E-16 8.5E-21 169.5 8.0 71 93-179 3-73 (369)
17 PRK14279 chaperone protein Dna 99.6 2.1E-16 4.6E-21 172.7 5.7 71 91-178 6-76 (392)
18 PRK14298 chaperone protein Dna 99.6 3.7E-16 8E-21 170.0 7.4 67 94-178 5-71 (377)
19 PRK14278 chaperone protein Dna 99.6 5.5E-16 1.2E-20 168.8 8.4 67 94-178 3-69 (378)
20 PRK14294 chaperone protein Dna 99.6 5.1E-16 1.1E-20 168.4 7.8 69 93-178 3-71 (366)
21 PRK14297 chaperone protein Dna 99.6 6E-16 1.3E-20 168.7 8.0 69 93-178 3-71 (380)
22 PRK14299 chaperone protein Dna 99.6 7.9E-16 1.7E-20 162.1 8.3 69 93-179 3-71 (291)
23 PRK14301 chaperone protein Dna 99.6 5.5E-16 1.2E-20 168.5 7.2 69 93-178 3-71 (373)
24 PRK14277 chaperone protein Dna 99.6 8E-16 1.7E-20 168.0 8.1 69 93-178 4-72 (386)
25 KOG0724 Zuotin and related mol 99.6 1E-15 2.2E-20 164.1 8.2 245 107-361 2-256 (335)
26 PTZ00341 Ring-infected erythro 99.6 3E-15 6.6E-20 172.5 12.1 72 90-179 569-640 (1136)
27 PRK14280 chaperone protein Dna 99.6 9.2E-16 2E-20 167.0 7.4 67 94-178 4-70 (376)
28 PRK10266 curved DNA-binding pr 99.6 1.2E-15 2.6E-20 161.8 7.8 93 94-204 4-106 (306)
29 PRK14281 chaperone protein Dna 99.6 1E-15 2.2E-20 167.7 7.3 68 94-178 3-70 (397)
30 PRK14291 chaperone protein Dna 99.6 1.5E-15 3.3E-20 165.5 7.4 67 94-178 3-69 (382)
31 PRK10767 chaperone protein Dna 99.6 2.1E-15 4.5E-20 164.0 8.1 69 93-178 3-71 (371)
32 KOG0716 Molecular chaperone (D 99.6 1.1E-15 2.4E-20 154.7 5.2 72 90-178 27-98 (279)
33 KOG0719 Molecular chaperone (D 99.6 1.5E-15 3.2E-20 150.4 5.7 92 93-201 13-104 (264)
34 KOG0691 Molecular chaperone (D 99.6 1.8E-15 3.9E-20 157.9 6.0 89 93-201 4-92 (296)
35 PF00226 DnaJ: DnaJ domain; I 99.6 2.6E-15 5.6E-20 122.5 5.5 64 95-174 1-64 (64)
36 KOG0715 Molecular chaperone (D 99.6 2.6E-15 5.5E-20 157.5 6.4 86 95-202 44-129 (288)
37 PRK14283 chaperone protein Dna 99.6 2E-15 4.4E-20 164.4 5.8 68 93-178 4-71 (378)
38 TIGR02349 DnaJ_bact chaperone 99.6 3.9E-15 8.4E-20 161.0 7.2 66 95-178 1-66 (354)
39 KOG0718 Molecular chaperone (D 99.6 2.6E-15 5.6E-20 160.8 5.7 75 90-178 5-79 (546)
40 PRK14289 chaperone protein Dna 99.6 4.9E-15 1.1E-19 161.9 7.5 69 93-178 4-72 (386)
41 PRK14290 chaperone protein Dna 99.6 6E-15 1.3E-19 160.0 8.1 69 94-178 3-71 (365)
42 PRK14284 chaperone protein Dna 99.5 3.7E-15 8E-20 163.0 6.1 68 94-178 1-68 (391)
43 PRK14295 chaperone protein Dna 99.5 4.6E-15 1E-19 162.1 6.2 67 92-175 7-73 (389)
44 PRK14292 chaperone protein Dna 99.5 1.1E-14 2.3E-19 158.5 7.9 67 94-178 2-68 (371)
45 PRK14293 chaperone protein Dna 99.5 1.4E-14 3.1E-19 157.6 7.4 68 93-178 2-69 (374)
46 PRK14300 chaperone protein Dna 99.5 2.7E-14 5.8E-19 155.4 5.3 67 94-178 3-69 (372)
47 PHA03102 Small T antigen; Revi 99.4 8.7E-14 1.9E-18 132.5 6.3 66 94-180 5-72 (153)
48 smart00271 DnaJ DnaJ molecular 99.4 2.5E-13 5.4E-18 109.0 5.6 59 94-168 1-59 (60)
49 KOG0550 Molecular chaperone (D 99.4 3.9E-13 8.6E-18 143.0 6.3 93 90-199 369-461 (486)
50 cd06257 DnaJ DnaJ domain or J- 99.4 5.3E-13 1.1E-17 105.1 5.5 55 95-166 1-55 (55)
51 KOG0624 dsRNA-activated protei 99.4 4.9E-13 1.1E-17 139.3 6.6 78 90-181 390-468 (504)
52 TIGR03835 termin_org_DnaJ term 99.4 6.3E-13 1.4E-17 150.7 7.5 67 94-178 2-68 (871)
53 KOG0721 Molecular chaperone (D 99.3 7.8E-13 1.7E-17 130.2 5.7 74 91-181 96-169 (230)
54 PRK05014 hscB co-chaperone Hsc 99.3 2.8E-12 6.1E-17 125.0 6.4 73 94-176 1-73 (171)
55 COG2214 CbpA DnaJ-class molecu 99.3 2.2E-12 4.8E-17 127.3 5.5 70 91-176 3-72 (237)
56 PRK01356 hscB co-chaperone Hsc 99.3 3.3E-12 7.3E-17 123.9 6.0 72 94-177 2-73 (166)
57 PRK00294 hscB co-chaperone Hsc 99.3 7.4E-12 1.6E-16 122.1 6.8 75 92-176 2-76 (173)
58 PRK03578 hscB co-chaperone Hsc 99.2 1.3E-11 2.8E-16 120.9 6.8 74 93-176 5-78 (176)
59 KOG0720 Molecular chaperone (D 99.2 2.4E-11 5.3E-16 130.8 5.5 68 91-176 232-299 (490)
60 KOG0049 Transcription factor, 99.1 1.2E-10 2.5E-15 128.7 7.7 101 458-634 304-404 (939)
61 KOG0722 Molecular chaperone (D 99.1 5.8E-11 1.3E-15 119.1 2.3 70 91-178 30-99 (329)
62 PHA02624 large T antigen; Prov 99.0 4.4E-10 9.5E-15 126.7 6.9 61 93-174 10-72 (647)
63 PF00249 Myb_DNA-binding: Myb- 99.0 8.3E-10 1.8E-14 85.2 5.8 45 588-635 2-47 (48)
64 PRK09430 djlA Dna-J like membr 99.0 4.9E-10 1.1E-14 116.8 5.3 66 91-166 197-262 (267)
65 KOG0714 Molecular chaperone (D 99.0 3.8E-10 8.3E-15 116.7 4.0 70 93-178 2-71 (306)
66 PTZ00100 DnaJ chaperone protei 98.9 6.4E-10 1.4E-14 101.1 4.6 52 93-165 64-115 (116)
67 COG5407 SEC63 Preprotein trans 98.9 1.7E-09 3.7E-14 116.0 5.9 77 93-181 97-173 (610)
68 KOG1150 Predicted molecular ch 98.9 8.7E-08 1.9E-12 93.5 16.2 72 88-175 47-118 (250)
69 PRK01773 hscB co-chaperone Hsc 98.8 4.3E-09 9.3E-14 102.8 6.5 72 94-175 2-73 (173)
70 PF00249 Myb_DNA-binding: Myb- 98.8 8.8E-09 1.9E-13 79.5 6.4 46 460-508 2-47 (48)
71 PF13921 Myb_DNA-bind_6: Myb-l 98.7 3.6E-08 7.9E-13 79.3 7.1 43 462-509 1-43 (60)
72 TIGR00714 hscB Fe-S protein as 98.7 2.9E-08 6.3E-13 95.7 5.9 62 107-177 1-62 (157)
73 smart00717 SANT SANT SWI3, AD 98.7 5E-08 1.1E-12 73.8 6.1 46 588-636 2-47 (49)
74 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 1.1E-07 2.4E-12 70.8 5.8 44 589-635 1-44 (45)
75 KOG0050 mRNA splicing protein 98.6 1.1E-07 2.5E-12 103.5 8.0 103 458-641 6-108 (617)
76 KOG0049 Transcription factor, 98.5 4.1E-07 8.9E-12 101.3 9.2 98 458-634 359-459 (939)
77 PF13921 Myb_DNA-bind_6: Myb-l 98.3 5.6E-07 1.2E-11 72.4 4.7 43 590-636 1-44 (60)
78 COG5147 REB1 Myb superfamily p 98.3 1E-06 2.2E-11 98.4 7.2 104 458-641 19-122 (512)
79 smart00717 SANT SANT SWI3, AD 98.2 3.1E-06 6.8E-11 63.8 6.0 45 460-508 2-46 (49)
80 cd00167 SANT 'SWI3, ADA2, N-Co 98.1 5E-06 1.1E-10 61.7 5.7 44 461-508 1-44 (45)
81 PLN03212 Transcription repress 98.0 8.2E-06 1.8E-10 82.9 5.4 54 583-639 21-76 (249)
82 KOG1789 Endocytosis protein RM 97.9 1E-05 2.2E-10 94.3 5.1 64 86-166 1273-1337(2235)
83 KOG0051 RNA polymerase I termi 97.9 5.5E-05 1.2E-09 85.6 9.7 103 458-636 383-507 (607)
84 PLN03091 hypothetical protein; 97.5 8.3E-05 1.8E-09 81.1 5.0 45 586-633 13-58 (459)
85 COG5259 RSC8 RSC chromatin rem 97.4 0.00018 4E-09 78.4 4.6 46 586-635 278-323 (531)
86 KOG0568 Molecular chaperone (D 97.3 0.00017 3.8E-09 72.1 4.0 58 91-166 44-102 (342)
87 KOG0048 Transcription factor, 97.0 0.00066 1.4E-08 69.9 4.1 51 587-640 9-61 (238)
88 KOG0457 Histone acetyltransfer 96.8 0.0012 2.7E-08 71.8 5.0 43 588-633 73-115 (438)
89 COG5259 RSC8 RSC chromatin rem 96.8 0.0011 2.3E-08 72.6 4.2 44 459-507 279-322 (531)
90 KOG0723 Molecular chaperone (D 96.7 0.0021 4.6E-08 57.4 4.8 53 94-167 56-108 (112)
91 KOG1279 Chromatin remodeling f 96.6 0.0025 5.5E-08 71.8 5.4 46 586-635 252-297 (506)
92 TIGR01557 myb_SHAQKYF myb-like 96.6 0.0072 1.6E-07 48.6 6.4 47 459-508 3-53 (57)
93 TIGR01557 myb_SHAQKYF myb-like 96.4 0.0069 1.5E-07 48.7 5.5 44 588-634 4-52 (57)
94 KOG0051 RNA polymerase I termi 96.2 0.018 4E-07 65.7 9.5 113 458-640 435-571 (607)
95 KOG0457 Histone acetyltransfer 96.2 0.0078 1.7E-07 65.7 5.8 51 458-512 71-121 (438)
96 KOG3192 Mitochondrial J-type c 95.8 0.0084 1.8E-07 57.2 3.6 74 92-175 6-79 (168)
97 KOG4167 Predicted DNA-binding 95.3 0.025 5.5E-07 65.0 5.9 50 586-639 618-667 (907)
98 KOG0431 Auxilin-like protein a 95.2 0.018 3.8E-07 64.8 4.3 51 108-165 399-449 (453)
99 PF13837 Myb_DNA-bind_4: Myb/S 95.2 0.03 6.5E-07 48.2 4.6 50 460-509 2-64 (90)
100 KOG1279 Chromatin remodeling f 95.1 0.025 5.4E-07 64.0 5.1 46 458-508 252-297 (506)
101 KOG1029 Endocytic adaptor prot 95.1 0.29 6.2E-06 57.1 13.3 11 596-606 811-821 (1118)
102 COG1076 DjlA DnaJ-domain-conta 95.1 0.022 4.7E-07 56.0 4.0 61 94-164 113-173 (174)
103 PF13837 Myb_DNA-bind_4: Myb/S 95.1 0.037 8E-07 47.7 4.9 55 589-643 3-71 (90)
104 KOG0050 mRNA splicing protein 94.6 0.03 6.6E-07 62.2 3.9 48 586-636 6-53 (617)
105 COG5114 Histone acetyltransfer 94.5 0.041 8.8E-07 57.9 4.4 45 586-633 62-106 (432)
106 KOG4364 Chromatin assembly fac 94.5 0.72 1.6E-05 53.1 14.3 18 591-608 716-733 (811)
107 PTZ00266 NIMA-related protein 93.2 1.2 2.7E-05 54.8 14.2 9 463-471 695-703 (1021)
108 COG1076 DjlA DnaJ-domain-conta 93.1 0.055 1.2E-06 53.1 2.2 72 95-176 2-73 (174)
109 PTZ00121 MAEBL; Provisional 93.0 2.7 5.9E-05 52.5 16.3 17 228-244 1066-1082(2084)
110 PLN03142 Probable chromatin-re 93.0 0.56 1.2E-05 57.9 11.0 148 458-641 823-989 (1033)
111 KOG1029 Endocytic adaptor prot 92.9 1.7 3.6E-05 51.0 13.8 18 108-125 187-204 (1118)
112 KOG2891 Surface glycoprotein [ 92.1 7.1 0.00015 40.9 15.8 23 316-338 344-366 (445)
113 PF13873 Myb_DNA-bind_5: Myb/S 91.6 0.39 8.5E-06 40.4 5.3 55 589-643 4-76 (78)
114 COG5114 Histone acetyltransfer 91.4 0.21 4.6E-06 52.6 4.2 47 458-508 62-108 (432)
115 COG5269 ZUO1 Ribosome-associat 91.2 11 0.00024 39.5 16.1 19 344-362 289-307 (379)
116 KOG1144 Translation initiation 91.1 0.96 2.1E-05 53.1 9.2 17 623-639 626-642 (1064)
117 KOG4364 Chromatin assembly fac 91.0 5.3 0.00012 46.3 14.9 24 258-281 245-268 (811)
118 PF13873 Myb_DNA-bind_5: Myb/S 90.8 0.42 9E-06 40.3 4.7 50 460-509 3-69 (78)
119 PF09111 SLIDE: SLIDE; InterP 88.7 1.1 2.3E-05 41.5 6.0 55 587-641 49-115 (118)
120 PRK00247 putative inner membra 88.5 3.1 6.8E-05 46.6 10.6 10 239-248 275-284 (429)
121 PF13325 MCRS_N: N-terminal re 88.4 3.8 8.3E-05 41.2 10.1 119 462-637 2-127 (199)
122 KOG0724 Zuotin and related mol 87.9 0.62 1.3E-05 50.3 4.6 54 589-642 33-91 (335)
123 PTZ00121 MAEBL; Provisional 87.6 14 0.00031 46.6 15.8 9 153-161 946-954 (2084)
124 KOG4329 DNA-binding protein [G 85.8 1 2.2E-05 48.6 4.6 43 588-634 278-321 (445)
125 KOG0163 Myosin class VI heavy 85.7 12 0.00026 44.2 13.3 12 92-104 551-562 (1259)
126 COG3064 TolA Membrane protein 85.0 38 0.00081 36.4 15.5 7 277-283 100-106 (387)
127 PRK09510 tolA cell envelope in 84.8 42 0.0009 37.3 16.6 12 273-284 96-107 (387)
128 PF12776 Myb_DNA-bind_3: Myb/S 84.4 2.4 5.2E-05 36.8 5.7 52 590-641 2-67 (96)
129 KOG0163 Myosin class VI heavy 83.8 21 0.00045 42.4 14.0 6 460-465 1068-1073(1259)
130 KOG2412 Nuclear-export-signal 83.7 15 0.00033 41.9 12.7 7 398-404 331-337 (591)
131 PRK09510 tolA cell envelope in 82.7 56 0.0012 36.3 16.5 7 225-231 60-66 (387)
132 PF09111 SLIDE: SLIDE; InterP 80.4 3.1 6.8E-05 38.5 5.0 52 458-509 48-110 (118)
133 COG5118 BDP1 Transcription ini 80.2 3.1 6.7E-05 45.2 5.5 44 586-633 364-407 (507)
134 COG3064 TolA Membrane protein 79.4 74 0.0016 34.3 15.2 7 225-231 60-66 (387)
135 COG5147 REB1 Myb superfamily p 78.9 2.3 4.9E-05 48.5 4.4 47 458-509 71-117 (512)
136 PF07946 DUF1682: Protein of u 76.2 15 0.00032 39.7 9.5 12 277-288 237-248 (321)
137 smart00595 MADF subfamily of S 75.1 3.8 8.3E-05 35.1 3.9 30 611-641 28-57 (89)
138 PF06936 Selenoprotein_S: Sele 72.3 37 0.0008 34.1 10.5 18 286-303 69-86 (190)
139 KOG2891 Surface glycoprotein [ 72.2 1.4E+02 0.003 31.7 15.0 8 189-196 219-226 (445)
140 KOG2072 Translation initiation 72.0 1.1E+02 0.0023 37.2 15.3 74 91-167 352-451 (988)
141 KOG1194 Predicted DNA-binding 71.7 8.5 0.00018 42.9 6.2 49 587-639 187-235 (534)
142 PF03656 Pam16: Pam16; InterP 70.1 7.4 0.00016 36.5 4.7 36 94-132 58-93 (127)
143 TIGR02894 DNA_bind_RsfA transc 68.7 6.6 0.00014 38.1 4.1 50 586-636 3-55 (161)
144 KOG3054 Uncharacterized conser 68.2 34 0.00074 35.4 9.2 10 323-332 140-149 (299)
145 TIGR02794 tolA_full TolA prote 67.8 1.2E+02 0.0027 33.2 14.2 13 271-283 82-94 (346)
146 KOG1194 Predicted DNA-binding 66.4 33 0.00071 38.5 9.3 44 587-635 470-513 (534)
147 TIGR02894 DNA_bind_RsfA transc 65.7 5.7 0.00012 38.6 3.0 48 460-509 5-55 (161)
148 PF07946 DUF1682: Protein of u 63.9 33 0.00072 37.0 8.9 22 99-123 128-149 (321)
149 KOG0717 Molecular chaperone (D 63.8 65 0.0014 36.5 11.0 67 225-292 133-199 (508)
150 KOG4167 Predicted DNA-binding 62.5 11 0.00024 44.3 5.1 44 457-505 617-660 (907)
151 KOG4282 Transcription factor G 61.3 20 0.00044 38.8 6.8 58 587-644 54-121 (345)
152 KOG2002 TPR-containing nuclear 61.0 47 0.001 40.7 10.0 14 149-162 664-677 (1018)
153 PF10545 MADF_DNA_bdg: Alcohol 60.9 11 0.00024 31.4 3.7 33 611-643 27-60 (85)
154 PF05262 Borrelia_P83: Borreli 59.4 1.3E+02 0.0028 34.6 12.7 26 98-126 68-99 (489)
155 PF05262 Borrelia_P83: Borreli 58.5 1.7E+02 0.0037 33.7 13.5 6 43-48 35-40 (489)
156 PRK14474 F0F1 ATP synthase sub 56.1 2.6E+02 0.0056 29.2 15.7 36 458-493 182-219 (250)
157 COG5118 BDP1 Transcription ini 55.7 19 0.00041 39.4 5.1 46 458-508 364-409 (507)
158 TIGR02794 tolA_full TolA prote 54.9 3.2E+02 0.007 30.0 15.9 9 595-603 312-320 (346)
159 PRK13923 putative spore coat p 54.5 18 0.00039 35.6 4.4 47 586-632 4-52 (170)
160 KOG4468 Polycomb-group transcr 54.1 18 0.00039 41.7 4.9 48 587-638 88-145 (782)
161 PF13404 HTH_AsnC-type: AsnC-t 53.4 35 0.00076 25.6 4.9 38 595-636 5-42 (42)
162 KOG4282 Transcription factor G 52.4 24 0.00051 38.3 5.5 51 459-509 54-113 (345)
163 KOG2656 DNA methyltransferase 51.3 11 0.00024 41.3 2.6 45 460-508 131-180 (445)
164 PF08914 Myb_DNA-bind_2: Rap1 50.3 34 0.00073 28.3 4.7 51 460-510 3-58 (65)
165 PF12776 Myb_DNA-bind_3: Myb/S 50.0 41 0.00089 28.9 5.6 48 461-508 1-61 (96)
166 KOG3634 Troponin [Cytoskeleton 48.6 1E+02 0.0023 33.3 9.2 8 485-492 300-307 (361)
167 PF11035 SnAPC_2_like: Small n 47.8 71 0.0015 34.4 7.8 57 584-640 18-74 (344)
168 smart00595 MADF subfamily of S 47.7 19 0.00041 30.7 3.1 23 484-508 29-51 (89)
169 PLN03086 PRLI-interacting fact 47.5 1.2E+02 0.0025 35.6 10.1 8 589-596 414-421 (567)
170 smart00426 TEA TEA domain. 46.0 50 0.0011 27.7 5.0 46 459-504 3-64 (68)
171 PF04747 DUF612: Protein of un 45.3 2.7E+02 0.0059 30.8 11.7 32 323-354 120-151 (510)
172 PLN03142 Probable chromatin-re 45.0 28 0.0006 43.5 5.0 41 587-630 824-864 (1033)
173 PF00674 DUP: DUP family; Int 43.9 48 0.001 29.9 5.2 43 467-509 44-99 (108)
174 PF06098 Radial_spoke_3: Radia 43.7 4.4E+02 0.0096 28.3 13.6 27 330-356 183-209 (291)
175 PF09726 Macoilin: Transmembra 42.7 3.6E+02 0.0078 32.5 13.5 9 38-46 165-173 (697)
176 KOG3654 Uncharacterized CH dom 42.7 1.2E+02 0.0026 34.7 8.8 21 151-171 203-223 (708)
177 KOG2357 Uncharacterized conser 39.4 2.6E+02 0.0055 31.4 10.6 11 227-237 284-294 (440)
178 PF10545 MADF_DNA_bdg: Alcohol 37.9 32 0.00069 28.5 2.9 25 484-508 28-52 (85)
179 KOG4661 Hsp27-ERE-TATA-binding 35.9 6.3E+02 0.014 29.6 13.1 23 99-124 410-432 (940)
180 KOG3554 Histone deacetylase co 35.7 45 0.00097 37.5 4.2 45 588-636 286-331 (693)
181 PF15236 CCDC66: Coiled-coil d 35.5 4.3E+02 0.0094 25.8 11.8 75 290-368 41-121 (157)
182 PF07960 CBP4: CBP4; InterPro 34.8 2.7E+02 0.0059 26.3 8.6 31 268-298 51-81 (128)
183 PRK13923 putative spore coat p 34.2 48 0.001 32.7 3.8 48 460-509 6-56 (170)
184 PF10147 CR6_interact: Growth 33.5 5.5E+02 0.012 26.4 15.2 43 261-303 104-146 (217)
185 PF04504 DUF573: Protein of un 33.5 82 0.0018 28.1 4.9 53 588-640 5-66 (98)
186 KOG2357 Uncharacterized conser 32.9 1E+02 0.0022 34.4 6.4 10 276-285 337-346 (440)
187 PF13446 RPT: A repeated domai 32.8 76 0.0017 25.4 4.2 27 94-123 5-31 (62)
188 KOG3841 TEF-1 and related tran 31.8 65 0.0014 35.4 4.6 48 458-505 75-138 (455)
189 PF09726 Macoilin: Transmembra 31.1 7.9E+02 0.017 29.7 13.9 11 260-270 422-432 (697)
190 KOG4848 Extracellular matrix-a 30.3 3.4E+02 0.0073 27.4 8.8 14 286-299 180-193 (225)
191 smart00426 TEA TEA domain. 28.3 81 0.0018 26.5 3.6 21 588-608 4-24 (68)
192 PF14687 DUF4460: Domain of un 27.8 98 0.0021 28.4 4.5 51 108-168 5-55 (112)
193 KOG2002 TPR-containing nuclear 26.4 6.4E+02 0.014 31.5 11.9 10 94-103 598-607 (1018)
194 PF08914 Myb_DNA-bind_2: Rap1 25.4 1.5E+02 0.0032 24.6 4.7 48 588-635 3-57 (65)
195 PRK13428 F0F1 ATP synthase sub 25.2 1E+03 0.022 26.9 13.9 20 588-607 383-403 (445)
196 KOG2656 DNA methyltransferase 25.0 50 0.0011 36.5 2.3 49 588-640 131-185 (445)
197 TIGR03321 alt_F1F0_F0_B altern 25.0 7.7E+02 0.017 25.4 13.9 35 459-493 184-219 (246)
198 KOG3841 TEF-1 and related tran 24.8 96 0.0021 34.2 4.4 53 585-637 74-143 (455)
199 PF12451 VPS11_C: Vacuolar pro 21.9 73 0.0016 24.8 2.1 26 465-494 19-44 (49)
200 PRK11179 DNA-binding transcrip 21.8 2.1E+02 0.0046 27.1 5.8 41 593-637 9-49 (153)
201 smart00501 BRIGHT BRIGHT, ARID 21.0 3E+02 0.0065 23.8 6.2 45 465-509 32-84 (93)
202 PRK11169 leucine-responsive tr 21.0 1.7E+02 0.0036 28.2 5.0 42 593-638 14-55 (164)
No 1
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-57 Score=451.62 Aligned_cols=304 Identities=36% Similarity=0.515 Sum_probs=271.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
+|+.+|+|.+|||+.+|+.+++.+|.+++++.+++||||+..+.| ...++..|++||+||+||+|+.+
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g------------~~~~d~fFk~iqkA~evL~D~~~ 106 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG------------NKGCDEFFKLIQKAREVLGDRKL 106 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC------------CCCcHHHHHHHHHHHHHhccHHH
Confidence 899999999999999999999999999999999999999996533 34568999999999999999999
Q ss_pred hhhhcccCCCCCCCCC-CCCCCchHHhhhhhhccCCCCccCccCCCCCCCCCChHHHHhhhhHHhcccccccCCCccccc
Q 006420 170 RRIYDSTDEFDDAIPA-DCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFD 248 (646)
Q Consensus 170 R~~YDs~~~~~~~~p~-~~~~~~Ff~~f~~~F~~~~r~s~~~~~P~lG~~~s~~e~v~~FY~fw~~F~SwR~f~~~de~~ 248 (646)
|.+|||++...+-.|. ...+.+||++|+|+|.+++|||..+|||+||..+++..+|+.||.||+||+|||+|.++|+.-
T Consensus 107 R~qyDS~df~advppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdSWRtFE~lded~ 186 (379)
T COG5269 107 RLQYDSNDFDADVPPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDY 186 (379)
T ss_pred HhhccccccccCCCCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccccccccchhhhc
Confidence 9999998654443333 346899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006420 249 LEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAE 328 (646)
Q Consensus 249 ~e~~e~R~~rR~~Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keeek~~k~~~k~~k~~~~r~~~ee~~~~~e 328 (646)
.++.++|+++|+.|+.|+..|.+.+..++.||+.||+.|.++||||+-|+++++..+...++++++..+.+...+....+
T Consensus 187 pdd~e~rD~kry~e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fkEqeK~~k~~rkWereagar~~a~aa~k~ka 266 (379)
T COG5269 187 PDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKA 266 (379)
T ss_pred CcchhhhhhHHHHHhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHhccchhhhhhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCC------ChhhHHHhhcCCCHHHHHHHH
Q 006420 329 EERRRKVEEEKRVAEVALQQKKVKEKEKKLLRKERTRLRTLSASVTSQHLLDV------STEDVESLCMSFDMEQLRNLC 402 (646)
Q Consensus 329 eer~~ke~ee~~~~e~~~~~KK~ke~~Kk~lkKekk~lR~~~~~~~~~~~~~~------~~~dve~lc~~l~~e~L~~l~ 402 (646)
+++.+.+.+.++.+-.....|++||..+++++.+++.+|+..++ .+||+. .++||++|+.+|..++|..|.
T Consensus 267 e~k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~kd---~~yf~d~~~a~~id~~v~li~~~l~d~el~~~a 343 (379)
T COG5269 267 EAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKD---ADYFGDADKAEHIDEDVDLIMDKLGDEELGQLA 343 (379)
T ss_pred HHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhhh---hccccCCchhhhcchhhhHHHHhcCcHHHHHHH
Confidence 66666666666655566677899999999999999999998884 455552 248999999999999999999
Q ss_pred HHhhcc
Q 006420 403 DKMEKS 408 (646)
Q Consensus 403 ~~l~~~ 408 (646)
..+.+.
T Consensus 344 ~~i~a~ 349 (379)
T COG5269 344 ADIKAE 349 (379)
T ss_pred HHhhhh
Confidence 888654
No 2
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=321.85 Aligned_cols=202 Identities=36% Similarity=0.588 Sum_probs=172.0
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
..+.++||+||||.+ +|+..+||++||+|||+|||||++.. ..++++.|+.|+.||+|||||..
T Consensus 4 ~~~~~c~YE~L~v~~---~a~d~eik~~YRklALq~HPDknpd~-------------ieeat~~F~~i~aAYeVLSdp~e 67 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVER---DADDDEIKKNYRKLALQYHPDKNPDR-------------IEEATQQFQLIQAAYEVLSDPQE 67 (508)
T ss_pred chhhhHHHHHhcccc---cCCHHHHHHHHHHHHHhhCCCCCCcc-------------HHHHHHHHHHHHHHHHHhcChHh
Confidence 356689999999999 99999999999999999999998853 45789999999999999999999
Q ss_pred hhhhcccCC---CCC------C-------------CCCCCCCCchHHhhhhhhccCCC----C--ccCccCCCCCCCCCC
Q 006420 170 RRIYDSTDE---FDD------A-------------IPADCAPQDFYKVFGPAFTRNGR----W--SANQLVPSLGDENTP 221 (646)
Q Consensus 170 R~~YDs~~~---~~~------~-------------~p~~~~~~~Ff~~f~~~F~~~~r----~--s~~~~~P~lG~~~s~ 221 (646)
|.|||++.. ++. . ++......+||.||+.+|...+. + ....-.|.||+..++
T Consensus 68 R~wyd~hreqil~~~~s~~~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ 147 (508)
T KOG0717|consen 68 RAWYDSHREQILRGKNSDTGVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTD 147 (508)
T ss_pred hhhHHHHHHHHhcCCCCccccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCc
Confidence 999999864 221 1 11223467899999999975332 1 123457999999999
Q ss_pred hHHHHhhhhHHhcccccccCCCccccchhhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHH
Q 006420 222 LKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAE 301 (646)
Q Consensus 222 ~e~v~~FY~fw~~F~SwR~f~~~de~~~e~~e~R~~rR~~Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keee 301 (646)
++.|..||.||..|.+-++|.|.|+|+..+..+|..+|.|+++|++.|...+.+++.+||.||.++.++|||++.-.+..
T Consensus 148 ye~~~~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k 227 (508)
T KOG0717|consen 148 YEQVVPFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELK 227 (508)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999833333
Q ss_pred HHHHHH
Q 006420 302 KAEKQK 307 (646)
Q Consensus 302 k~~k~~ 307 (646)
..+..+
T Consensus 228 ~~E~~r 233 (508)
T KOG0717|consen 228 DAEAYR 233 (508)
T ss_pred HHHHHH
Confidence 333333
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-22 Score=213.15 Aligned_cols=96 Identities=39% Similarity=0.582 Sum_probs=79.3
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
|...|||+||||++ +||+++||+|||+||++||||+|++ .++++++|+.|++||+|||||++|
T Consensus 1 ~~~~dyYeiLGV~k---~As~~EIKkAYRkLA~kyHPD~n~g--------------~~~AeeKFKEI~eAYEVLsD~eKR 63 (371)
T COG0484 1 MAKRDYYEILGVSK---DASEEEIKKAYRKLAKKYHPDRNPG--------------DKEAEEKFKEINEAYEVLSDPEKR 63 (371)
T ss_pred CCccchhhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--------------CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 35689999999999 9999999999999999999999995 457899999999999999999999
Q ss_pred hhhcccCCCCCC--CCC--CCC-CC-chHHhhhhhhccC
Q 006420 171 RIYDSTDEFDDA--IPA--DCA-PQ-DFYKVFGPAFTRN 203 (646)
Q Consensus 171 ~~YDs~~~~~~~--~p~--~~~-~~-~Ff~~f~~~F~~~ 203 (646)
++||.+++.... ... ... .+ +|.++|+.+|+..
T Consensus 64 a~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF~~~FgGg 102 (371)
T COG0484 64 AAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGG 102 (371)
T ss_pred HHhhccCccccccCCcCCCCcCCCCCCHHHHHHHhhcCC
Confidence 999999875432 100 111 11 6889999999633
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=3.9e-20 Score=192.36 Aligned_cols=70 Identities=46% Similarity=0.802 Sum_probs=66.3
Q ss_pred ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
-.+|||+||||++ +|+..+||+|||||||+||||||++ ++.+.+.|+.|+.||+|||||.+|+
T Consensus 14 ~~rDfYelLgV~k---~Asd~eIKkAYRKLALk~HPDkNpd--------------dp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 14 AGRDFYELLGVPK---NASDQEIKKAYRKLALKYHPDKNPD--------------DPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred cCCCHHHHhCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--------------CHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3589999999999 9999999999999999999999997 5678999999999999999999999
Q ss_pred hhcccCC
Q 006420 172 IYDSTDE 178 (646)
Q Consensus 172 ~YDs~~~ 178 (646)
.||.+|+
T Consensus 77 ~YD~~GE 83 (336)
T KOG0713|consen 77 HYDTYGE 83 (336)
T ss_pred HHHhhhH
Confidence 9999985
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.74 E-value=1.2e-17 Score=167.64 Aligned_cols=101 Identities=22% Similarity=0.340 Sum_probs=88.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
+.++||+||+++|..+|++|+. .+|..||..||.+||++||+.||.++|
T Consensus 24 KRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~gRT~KQCReRW~N~L---------------------------- 72 (249)
T PLN03212 24 KRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLLRCGKSCRLRWMNYL---------------------------- 72 (249)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcCCCcchHHHHHHHhh----------------------------
Confidence 5678999999999999999943 479999999977899999999999986
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||.+|+.+|..++..|+ .+|..||
T Consensus 73 --------------------------------------------~P~I~kgpWT~EED~lLlel~~~~G----nKWs~IA 104 (249)
T PLN03212 73 --------------------------------------------RPSVKRGGITSDEEDLILRLHRLLG----NRWSLIA 104 (249)
T ss_pred --------------------------------------------chhcccCCCChHHHHHHHHHHHhcc----ccHHHHH
Confidence 2233445899999999999999996 6899999
Q ss_pred hhCCCCCHHHHHHHHHHHHH
Q 006420 618 TAVPGKTVIQCKKKFASLKE 637 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~~ 637 (646)
..|||||.++|++||..+..
T Consensus 105 k~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 105 GRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred hhcCCCCHHHHHHHHHHHHh
Confidence 99999999999999976543
No 6
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.7e-18 Score=185.14 Aligned_cols=69 Identities=42% Similarity=0.720 Sum_probs=63.4
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+||++||||+++. ...+.++|+.|++||+|||||.+|+.
T Consensus 2 ~~dyY~vLgv~~---~As~~eIkkayrkla~k~HPD~~~~--------------~~~a~~~f~~i~~AYevLsd~~kR~~ 64 (369)
T PRK14288 2 ELSYYEILEVEK---HSNQETIKKSYRKLALKYHPDRNAG--------------DKEAEEKFKLINEAYGVLSDEKKRAL 64 (369)
T ss_pred CCChHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------ccHHHHHHHHHHHHHHHhccHHHHHH
Confidence 469999999999 9999999999999999999999974 23468899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.+++
T Consensus 65 YD~~G~ 70 (369)
T PRK14288 65 YDRYGK 70 (369)
T ss_pred HHHhcc
Confidence 999875
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=6.4e-18 Score=177.85 Aligned_cols=68 Identities=49% Similarity=0.792 Sum_probs=63.5
Q ss_pred ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
+++.||+||||++ +||+.+||+|||+|+++||||||++ +.++|+.|+.||+|||||.+|.
T Consensus 2 ~~~~~y~il~v~~---~As~~eikkayrkla~k~HpDkn~~-----------------~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 2 KNTKLYDILGVSP---DASEEEIKKAYRKLALKYHPDKNPD-----------------AGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred cccccceeeccCC---CcCHHHHHHHHHHHHHHhCCCCCcc-----------------HHHHHHHHHHHHHHhcCHHHHH
Confidence 4678999999999 9999999999999999999999995 4689999999999999999999
Q ss_pred hhcccCCC
Q 006420 172 IYDSTDEF 179 (646)
Q Consensus 172 ~YDs~~~~ 179 (646)
.||.+++.
T Consensus 62 ~yD~~g~~ 69 (337)
T KOG0712|consen 62 IYDQYGEE 69 (337)
T ss_pred HHHhhhhh
Confidence 99999864
No 8
>PLN03091 hypothetical protein; Provisional
Probab=99.68 E-value=2e-16 Score=169.31 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=88.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..++||.|||++|.++|.+|+. ..|..||..+|.+||++||+.||.++|
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~gRT~KQCRERW~NyL---------------------------- 61 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWINYL---------------------------- 61 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccCcCcchHhHHHHhcc----------------------------
Confidence 4578999999999999999943 369999999987899999999999986
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|.....+||.+|+.+|...++.|| .+|..||
T Consensus 62 --------------------------------------------dP~IkKgpWT~EED~lLLeL~k~~G----nKWskIA 93 (459)
T PLN03091 62 --------------------------------------------RPDLKRGTFSQQEENLIIELHAVLG----NRWSQIA 93 (459)
T ss_pred --------------------------------------------CCcccCCCCCHHHHHHHHHHHHHhC----cchHHHH
Confidence 2233445899999999999999996 5899999
Q ss_pred hhCCCCCHHHHHHHHHHHHH
Q 006420 618 TAVPGKTVIQCKKKFASLKE 637 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~~ 637 (646)
..|||||.++|++||..+..
T Consensus 94 k~LPGRTDnqIKNRWnslLK 113 (459)
T PLN03091 94 AQLPGRTDNEIKNLWNSCLK 113 (459)
T ss_pred HhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999986544
No 9
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.67 E-value=4.7e-17 Score=178.79 Aligned_cols=89 Identities=38% Similarity=0.585 Sum_probs=70.6
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....|||+||||++ +||.++||+|||+||++||||++++ .++|+.|++||+|||||.+
T Consensus 24 ~~~~~d~Y~vLGV~~---~As~~eIKkAYrkla~k~HPDk~~~------------------~e~F~~i~~AYevLsD~~k 82 (421)
T PTZ00037 24 EVDNEKLYEVLNLSK---DCTTSEIKKAYRKLAIKHHPDKGGD------------------PEKFKEISRAYEVLSDPEK 82 (421)
T ss_pred cccchhHHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCch------------------HHHHHHHHHHHHHhccHHH
Confidence 344679999999999 9999999999999999999999862 3689999999999999999
Q ss_pred hhhhcccCCCCCCCCCCCCCCchHHhhhhhhc
Q 006420 170 RRIYDSTDEFDDAIPADCAPQDFYKVFGPAFT 201 (646)
Q Consensus 170 R~~YDs~~~~~~~~p~~~~~~~Ff~~f~~~F~ 201 (646)
|+.||.++..... ......+|+++|+.+|+
T Consensus 83 R~~YD~~G~~~~~--~~~~~~d~~d~f~~~Fg 112 (421)
T PTZ00037 83 RKIYDEYGEEGLE--GGEQPADASDLFDLIFG 112 (421)
T ss_pred HHHHhhhcchhcc--cCCCCcchhhhHHHhhc
Confidence 9999998753211 01112345566666665
No 10
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=7.2e-17 Score=175.32 Aligned_cols=69 Identities=43% Similarity=0.794 Sum_probs=63.4
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+||++||||++++ ...+.++|+.|++||+||+||.+|+.
T Consensus 3 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kR~~ 65 (372)
T PRK14286 3 ERSYYDILGVSK---SANDEEIKSAYRKLAIKYHPDKNKG--------------NKESEEKFKEATEAYEILRDPKKRQA 65 (372)
T ss_pred CCCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------chHHHHHHHHHHHHHHHhccHHHHHH
Confidence 369999999999 9999999999999999999999874 23467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 66 YD~~G~ 71 (372)
T PRK14286 66 YDQFGK 71 (372)
T ss_pred HHHhCc
Confidence 999875
No 11
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.66 E-value=2.5e-16 Score=161.31 Aligned_cols=96 Identities=18% Similarity=0.325 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcc
Q 006420 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTT 538 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~ 538 (646)
.+|||.|||.+|+..|.+|.+| +|..||..+|.+|++|.|+.||.++|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyL----------------------------- 56 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYL----------------------------- 56 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhccc-----------------------------
Confidence 5899999999999999999555 79999999998899999999999986
Q ss_pred hhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh
Q 006420 539 REEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT 618 (646)
Q Consensus 539 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~ 618 (646)
.|.++..+||.+|+.+|.+++..| ++||..||.
T Consensus 57 -------------------------------------------rP~ikrg~fT~eEe~~Ii~lH~~~----GNrWs~IA~ 89 (238)
T KOG0048|consen 57 -------------------------------------------RPDLKRGNFSDEEEDLIIKLHALL----GNRWSLIAG 89 (238)
T ss_pred -------------------------------------------CCCccCCCCCHHHHHHHHHHHHHH----CcHHHHHHh
Confidence 334456689999999999999999 489999999
Q ss_pred hCCCCCHHHHHHHHH
Q 006420 619 AVPGKTVIQCKKKFA 633 (646)
Q Consensus 619 ~Vpgrt~~~c~~Ryk 633 (646)
.|||||+++++++|-
T Consensus 90 ~LPGRTDNeIKN~Wn 104 (238)
T KOG0048|consen 90 RLPGRTDNEVKNHWN 104 (238)
T ss_pred hCCCcCHHHHHHHHH
Confidence 999999999999993
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.8e-16 Score=172.09 Aligned_cols=68 Identities=43% Similarity=0.723 Sum_probs=62.4
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+|+++||||+++. ..+.+.|+.|++||+||+||.+|+.|
T Consensus 4 ~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HpD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~kR~~Y 65 (371)
T PRK14287 4 RDYYEVLGVDR---NASVDEVKKAYRKLARKYHPDVNKA---------------PDAEDKFKEVKEAYDTLSDPQKKAHY 65 (371)
T ss_pred CCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHhCcHhHHHHH
Confidence 69999999999 9999999999999999999999863 23578999999999999999999999
Q ss_pred cccCCC
Q 006420 174 DSTDEF 179 (646)
Q Consensus 174 Ds~~~~ 179 (646)
|.+++.
T Consensus 66 D~~G~~ 71 (371)
T PRK14287 66 DQFGHT 71 (371)
T ss_pred HhhCCc
Confidence 998753
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.6e-16 Score=173.20 Aligned_cols=68 Identities=44% Similarity=0.704 Sum_probs=62.5
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ .||.++||+|||+|+++||||++++ ..+.++|+.|++||+||+||.+|..
T Consensus 3 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HpD~~~~---------------~~a~~~f~~i~~Ay~vL~d~~kR~~ 64 (380)
T PRK14276 3 NTEYYDRLGVSK---DASQDEIKKAYRKLSKKYHPDINKE---------------PGAEEKYKEVQEAYETLSDPQKRAA 64 (380)
T ss_pred CCCHHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------cCHHHHHHHHHHHHHHhcCHhhhhh
Confidence 469999999999 9999999999999999999999873 2357899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.+++
T Consensus 65 YD~~G~ 70 (380)
T PRK14276 65 YDQYGA 70 (380)
T ss_pred HhhcCC
Confidence 999875
No 14
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.5e-16 Score=172.82 Aligned_cols=68 Identities=37% Similarity=0.655 Sum_probs=62.6
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+||++||||++++ ..+.++|+.|++||+|||||.+|+.
T Consensus 3 ~~dyY~~Lgv~~---~a~~~eik~ayrkla~~~HPD~n~~---------------~~a~~~F~~i~~AyevLsD~~KR~~ 64 (372)
T PRK14296 3 KKDYYEVLGVSK---TASEQEIRQAYRKLAKQYHPDLNKS---------------PDAHDKMVEINEAADVLLDKDKRKQ 64 (372)
T ss_pred CCCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------chHHHHHHHHHHHHHHhcCHHHhhh
Confidence 469999999999 9999999999999999999999873 2467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 65 YD~~G~ 70 (372)
T PRK14296 65 YDQFGH 70 (372)
T ss_pred hhhccc
Confidence 999875
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.7e-16 Score=170.47 Aligned_cols=68 Identities=51% Similarity=0.812 Sum_probs=62.9
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+|+++||||++++ ...+.++|+.|++||+||+||.+|..|
T Consensus 3 ~d~y~iLgv~~---~a~~~eIk~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kr~~y 65 (365)
T PRK14285 3 RDYYEILGLSK---GASKDEIKKAYRKIAIKYHPDKNKG--------------NKEAESIFKEATEAYEVLIDDNKRAQY 65 (365)
T ss_pred CCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------CHHHHHHHHHHHHHHHHHcCcchhHHH
Confidence 69999999999 9999999999999999999999874 234678999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 66 d~~g~ 70 (365)
T PRK14285 66 DRFGH 70 (365)
T ss_pred HhcCc
Confidence 99875
No 16
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.9e-16 Score=169.47 Aligned_cols=71 Identities=41% Similarity=0.749 Sum_probs=63.7
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+|+++||||+++.. ...+.++|+.|++||+||+||.+|+.
T Consensus 3 ~~d~y~~lgv~~---~a~~~eik~ayr~la~~~HPD~~~~~-------------~~~a~~~f~~i~~Ay~vL~d~~kR~~ 66 (369)
T PRK14282 3 KKDYYEILGVSR---NATQEEIKRAYKRLVKEWHPDRHPEN-------------RKEAEQKFKEIQEAYEVLSDPQKRAM 66 (369)
T ss_pred CCChHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCccc-------------hhHHHHHHHHHHHHHHHhcChhhHHH
Confidence 369999999999 99999999999999999999998741 23468899999999999999999999
Q ss_pred hcccCCC
Q 006420 173 YDSTDEF 179 (646)
Q Consensus 173 YDs~~~~ 179 (646)
||.++..
T Consensus 67 YD~~g~~ 73 (369)
T PRK14282 67 YDRFGYV 73 (369)
T ss_pred HhhcCcc
Confidence 9998753
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.1e-16 Score=172.70 Aligned_cols=71 Identities=42% Similarity=0.643 Sum_probs=64.6
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
|...|||+||||++ +||.++||+|||+||++||||++++ ...+.++|+.|++||+|||||.+|
T Consensus 6 ~~~~Dyy~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vLsD~~KR 68 (392)
T PRK14279 6 WVEKDFYKELGVSS---DASAEEIKKAYRKLARELHPDANPG--------------DPAAEERFKAVSEAHDVLSDPAKR 68 (392)
T ss_pred hcccCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------ChHHHHHHHHHHHHHHHhcchhhh
Confidence 44579999999999 9999999999999999999999974 235688999999999999999999
Q ss_pred hhhcccCC
Q 006420 171 RIYDSTDE 178 (646)
Q Consensus 171 ~~YDs~~~ 178 (646)
+.||.++.
T Consensus 69 ~~YD~~G~ 76 (392)
T PRK14279 69 KEYDETRR 76 (392)
T ss_pred hHHHHhhh
Confidence 99999864
No 18
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.7e-16 Score=170.00 Aligned_cols=67 Identities=46% Similarity=0.758 Sum_probs=61.9
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+||++||||+++. ..+.++|+.|++||+||+||.+|+.|
T Consensus 5 ~d~y~iLgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~vL~d~~kR~~Y 66 (377)
T PRK14298 5 RDYYEILGLSK---DASVEDIKKAYRKLAMKYHPDKNKE---------------PDAEEKFKEISEAYAVLSDAEKRAQY 66 (377)
T ss_pred CCHHHhhCCCC---CCCHHHHHHHHHHHHHHhCccccCC---------------hhHHHHHHHHHHHHHHhcchHhhhhh
Confidence 59999999999 9999999999999999999999873 23578999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 67 D~~G~ 71 (377)
T PRK14298 67 DRFGH 71 (377)
T ss_pred hhcCc
Confidence 99875
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=5.5e-16 Score=168.76 Aligned_cols=67 Identities=43% Similarity=0.731 Sum_probs=62.1
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+||++||||+++. ..+.++|+.|++||+||+||.+|+.|
T Consensus 3 ~d~y~iLgv~~---~a~~~eik~ayr~la~~~hpD~~~~---------------~~a~~~f~~i~~Ay~vL~d~~~r~~Y 64 (378)
T PRK14278 3 RDYYGLLGVSR---NASDAEIKRAYRKLARELHPDVNPD---------------EEAQEKFKEISVAYEVLSDPEKRRIV 64 (378)
T ss_pred CCcceecCCCC---CCCHHHHHHHHHHHHHHHCCCCCCc---------------HHHHHHHHHHHHHHHHhchhhhhhhh
Confidence 68999999999 9999999999999999999999973 34678999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 65 D~~G~ 69 (378)
T PRK14278 65 DLGGD 69 (378)
T ss_pred hccCC
Confidence 99864
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=5.1e-16 Score=168.42 Aligned_cols=69 Identities=49% Similarity=0.835 Sum_probs=63.2
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+||++||||++++ ...+.+.|+.|++||+||+||.+|..
T Consensus 3 ~~d~y~~lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~~~~~f~~~~~Ay~vL~d~~~r~~ 65 (366)
T PRK14294 3 KRDYYEILGVTR---DASEEEIKKSYRKLAMKYHPDRNPG--------------DKEAEELFKEAAEAYEVLSDPKKRGI 65 (366)
T ss_pred CCChHHHhCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------chHHHHHHHHHHHHHHHhccHHHHHH
Confidence 469999999999 9999999999999999999999974 23467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.+++
T Consensus 66 yD~~G~ 71 (366)
T PRK14294 66 YDQYGH 71 (366)
T ss_pred HHhhcc
Confidence 999875
No 21
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=6e-16 Score=168.69 Aligned_cols=69 Identities=45% Similarity=0.797 Sum_probs=63.3
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+|+++||||++++ ...+.+.|+.|++||+||+||.+|..
T Consensus 3 ~~d~y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~r~~ 65 (380)
T PRK14297 3 SKDYYEVLGLEK---GASDDEIKKAFRKLAIKYHPDKNKG--------------NKEAEEKFKEINEAYQVLSDPQKKAQ 65 (380)
T ss_pred CCChHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHhcCHhhhCc
Confidence 369999999999 9999999999999999999999974 23467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 66 yD~~G~ 71 (380)
T PRK14297 66 YDQFGT 71 (380)
T ss_pred hhhcCc
Confidence 999875
No 22
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=7.9e-16 Score=162.05 Aligned_cols=69 Identities=45% Similarity=0.761 Sum_probs=62.8
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+|+++||||+++. ..+.+.|+.|++||+||+||.+|+.
T Consensus 3 ~~d~y~vLgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~kr~~ 64 (291)
T PRK14299 3 YKDYYAILGVPK---NASQDEIKKAFKKLARKYHPDVNKS---------------PGAEEKFKEINEAYTVLSDPEKRRI 64 (291)
T ss_pred CCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 469999999999 9999999999999999999999873 2357899999999999999999999
Q ss_pred hcccCCC
Q 006420 173 YDSTDEF 179 (646)
Q Consensus 173 YDs~~~~ 179 (646)
||.++..
T Consensus 65 yD~~g~~ 71 (291)
T PRK14299 65 YDTYGTT 71 (291)
T ss_pred HHhcCCc
Confidence 9998753
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5.5e-16 Score=168.49 Aligned_cols=69 Identities=49% Similarity=0.775 Sum_probs=63.2
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+|+++||||++++ ...+.++|+.|++||+||+||.+|..
T Consensus 3 ~~~~y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kr~~ 65 (373)
T PRK14301 3 QRDYYEVLGVSR---DASEDEIKKAYRKLALQYHPDRNPD--------------NPEAEQKFKEAAEAYEVLRDAEKRAR 65 (373)
T ss_pred CCChHHhcCCCC---CCCHHHHHHHHHHHHHHhCCCcCCC--------------ChHHHHHHHHHHHHHHHhcchhhhhh
Confidence 369999999999 9999999999999999999999974 23467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 66 yD~~g~ 71 (373)
T PRK14301 66 YDRFGH 71 (373)
T ss_pred hhhccc
Confidence 999875
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=8e-16 Score=167.97 Aligned_cols=69 Identities=46% Similarity=0.787 Sum_probs=63.2
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+||++||||++++ ...++++|+.|++||+||+||.+|..
T Consensus 4 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kr~~ 66 (386)
T PRK14277 4 KKDYYEILGVDR---NATEEEIKKAYRRLAKKYHPDLNPG--------------DKEAEQKFKEINEAYEILSDPQKRAQ 66 (386)
T ss_pred CCCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCcCCC--------------chHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 369999999999 9999999999999999999999974 23467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 67 yD~~G~ 72 (386)
T PRK14277 67 YDQFGH 72 (386)
T ss_pred HHhhcc
Confidence 999875
No 25
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1e-15 Score=164.14 Aligned_cols=245 Identities=36% Similarity=0.487 Sum_probs=190.2
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhcccCCCCCCCCC-
Q 006420 107 YLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTDEFDDAIPA- 185 (646)
Q Consensus 107 ~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YDs~~~~~~~~p~- 185 (646)
+.++..+|..+|+..++.+||++.... + .......+.|++|.+||.||++...|..+|+.+.|.+.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~ 71 (335)
T KOG0724|consen 2 GLASEDELRLAYREMALKSHPEKKSFY---E-------KLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLE 71 (335)
T ss_pred CcccHHHHHHHHHHHhhhcCcHHHHHH---H-------HhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccc
Confidence 457889999999999999999998520 0 00223578899999999999998888999999989998988
Q ss_pred CCCCCchHHhhhhhhccCCCCccCccCCCCCCCCCChHHHHhhhhHHhcccccccCCCccccchhhhccHHHHHHH----
Q 006420 186 DCAPQDFYKVFGPAFTRNGRWSANQLVPSLGDENTPLKEVDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWM---- 261 (646)
Q Consensus 186 ~~~~~~Ff~~f~~~F~~~~r~s~~~~~P~lG~~~s~~e~v~~FY~fw~~F~SwR~f~~~de~~~e~~e~R~~rR~~---- 261 (646)
......|+.++++.|..+++|+..+++|.|+..+.+...|..||.||+.|.+|+.|...++.+.....++...+++
T Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 151 (335)
T KOG0724|consen 72 KRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQ 151 (335)
T ss_pred cccchhHHhhhhhHHHHhhhhccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhccccc
Confidence 6778899999999999999999999999999998888899999999999999999999987765555888899988
Q ss_pred -HHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 006420 262 -ERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKAEKQKKKEAKYLAKK----LQEEEAARAAEEERRRKVE 336 (646)
Q Consensus 262 -Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keeek~~k~~~k~~k~~~~r----~~~ee~~~~~eeer~~ke~ 336 (646)
.+.|...+.+.+.....+++.||.+++..|+++..+...+.....+.........+ ...........+++.++..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~ 231 (335)
T KOG0724|consen 152 RGKSNAEELRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSI 231 (335)
T ss_pred ccccchhhhhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchh
Confidence 48889999999999999999999999999999999998888877777665543332 1222222222233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006420 337 EEKRVAEVALQQKKVKEKEKKLLRK 361 (646)
Q Consensus 337 ee~~~~e~~~~~KK~ke~~Kk~lkK 361 (646)
+...........+......+...++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (335)
T KOG0724|consen 232 EDITTASEAEDRKKEDEAAKEAKKK 256 (335)
T ss_pred hhhhccchhhhhhcchhhhhhhhcc
Confidence 4333333333444444444444444
No 26
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.60 E-value=3e-15 Score=172.48 Aligned_cols=72 Identities=28% Similarity=0.379 Sum_probs=65.1
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
.....+||+||||++ +||..+||+|||+||++||||++++ . .+...|+.|++||+|||||.+
T Consensus 569 ~~~d~dYYdILGVs~---dAS~~EIKKAYRKLAlkyHPDKN~~--------------~-~A~ekFq~I~EAYeVLSDp~k 630 (1136)
T PTZ00341 569 EIPDTLFYDILGVGV---NADMKEISERYFKLAENYYPPKRSG--------------N-EGFHKFKKINEAYQILGDIDK 630 (1136)
T ss_pred cCCCCChHHHcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC--------------c-hHHHHHHHHHHHHHHhCCHHH
Confidence 345689999999999 9999999999999999999999984 1 356799999999999999999
Q ss_pred hhhhcccCCC
Q 006420 170 RRIYDSTDEF 179 (646)
Q Consensus 170 R~~YDs~~~~ 179 (646)
|+.||.+|..
T Consensus 631 Rk~YD~~G~~ 640 (1136)
T PTZ00341 631 KKMYNKFGYD 640 (1136)
T ss_pred HHHHhhcccc
Confidence 9999998764
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=9.2e-16 Score=166.95 Aligned_cols=67 Identities=43% Similarity=0.735 Sum_probs=62.0
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+|+++||||++++ ..+.++|+.|++||+|||||.+|..|
T Consensus 4 ~~~y~iLgv~~---~a~~~eik~ayr~la~~~HpD~~~~---------------~~a~~~f~~i~~Ay~vL~d~~kr~~y 65 (376)
T PRK14280 4 RDYYEVLGVSK---SASKDEIKKAYRKLSKKYHPDINKE---------------EGADEKFKEISEAYEVLSDDQKRAQY 65 (376)
T ss_pred CChHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHhccHhHHHHH
Confidence 69999999999 9999999999999999999999873 23578999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 66 D~~G~ 70 (376)
T PRK14280 66 DQFGH 70 (376)
T ss_pred HhcCc
Confidence 99875
No 28
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.60 E-value=1.2e-15 Score=161.80 Aligned_cols=93 Identities=32% Similarity=0.558 Sum_probs=73.1
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ .||.++||+|||+|+++||||+++. ..+.+.|+.|++||+||+||.+|..|
T Consensus 4 ~d~y~~Lgv~~---~a~~~eik~ayr~la~k~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~~~~kr~~y 65 (306)
T PRK10266 4 KDYYAIMGVKP---TDDLKTIKTAYRRLARKYHPDVSKE---------------PDAEARFKEVAEAWEVLSDEQRRAEY 65 (306)
T ss_pred CChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 69999999999 9999999999999999999999763 24678999999999999999999999
Q ss_pred cccCCC------CCCCCC----CCCCCchHHhhhhhhccCC
Q 006420 174 DSTDEF------DDAIPA----DCAPQDFYKVFGPAFTRNG 204 (646)
Q Consensus 174 Ds~~~~------~~~~p~----~~~~~~Ff~~f~~~F~~~~ 204 (646)
|.++.. ....+. .....+|.++|+.+|+..+
T Consensus 66 D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~ 106 (306)
T PRK10266 66 DQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHA 106 (306)
T ss_pred HHhhccccCcccccccccCCCCCCCCCCHHHHHHHHhCCCC
Confidence 987532 111111 1123457778888776533
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1e-15 Score=167.69 Aligned_cols=68 Identities=53% Similarity=0.835 Sum_probs=62.6
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ .||.++||+|||+|+++||||++++ ...+.+.|+.|++||+||+||.+|+.|
T Consensus 3 ~d~y~iLgv~~---~a~~~eikkayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~r~~y 65 (397)
T PRK14281 3 RDYYEVLGVSR---SADKDEIKKAYRKLALKYHPDKNPD--------------NKEAEEHFKEVNEAYEVLSNDDKRRRY 65 (397)
T ss_pred CChhhhcCCCC---CCCHHHHHHHHHHHHHHHCCCcCCC--------------chHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 59999999999 9999999999999999999999974 234678999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 66 D~~g~ 70 (397)
T PRK14281 66 DQFGH 70 (397)
T ss_pred hhccc
Confidence 99875
No 30
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.5e-15 Score=165.54 Aligned_cols=67 Identities=48% Similarity=0.809 Sum_probs=61.9
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ .||.++||+|||+|+++||||++++ ..+.++|+.|++||+|||||.+|+.|
T Consensus 3 ~d~Y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~vLsd~~kR~~Y 64 (382)
T PRK14291 3 KDYYEILGVSR---NATQEEIKKAYRRLARKYHPDFNKN---------------PEAEEKFKEINEAYQVLSDPEKRKLY 64 (382)
T ss_pred CCHHHhhCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------ccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 69999999999 9999999999999999999999973 23578999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 65 D~~g~ 69 (382)
T PRK14291 65 DQFGH 69 (382)
T ss_pred hhhcc
Confidence 99865
No 31
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.1e-15 Score=164.00 Aligned_cols=69 Identities=49% Similarity=0.858 Sum_probs=62.9
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+|+++||||++++ ...+.+.|+.|++||+||+||.+|..
T Consensus 3 ~~d~y~iLgv~~---~as~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~r~~ 65 (371)
T PRK10767 3 KRDYYEVLGVSR---NASEDEIKKAYRKLAMKYHPDRNPG--------------DKEAEEKFKEIKEAYEVLSDPQKRAA 65 (371)
T ss_pred CCChHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------cHHHHHHHHHHHHHHHHhcchhhhhH
Confidence 369999999999 9999999999999999999999874 23467899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 66 yd~~g~ 71 (371)
T PRK10767 66 YDQYGH 71 (371)
T ss_pred hhhccc
Confidence 999865
No 32
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=154.72 Aligned_cols=72 Identities=46% Similarity=0.783 Sum_probs=65.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
+-...|+|+||||++ +||.++||++||+|+++||||++++ .+++.++|+.|+.||+||+||.+
T Consensus 27 ~~~~~~LYdVLgl~k---~at~d~IKKaYR~L~~k~HPD~~gd--------------~P~~~dkf~eIN~Ay~ILsD~~k 89 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPK---TATKDEIKKAYRKLALKYHPDKNGD--------------NPEATDKFKEINTAYAILSDPTK 89 (279)
T ss_pred ccchhHHHHHhCCCc---ccchHHHHHHHHHHHHHhCCCcCCC--------------CchhHHHHHHHHHHHHHhcChhh
Confidence 344789999999999 9999999999999999999999996 35678999999999999999999
Q ss_pred hhhhcccCC
Q 006420 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|..||.++.
T Consensus 90 R~~YD~~g~ 98 (279)
T KOG0716|consen 90 RNVYDEYGE 98 (279)
T ss_pred hhhHHHhhh
Confidence 999999864
No 33
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.5e-15 Score=150.36 Aligned_cols=92 Identities=36% Similarity=0.654 Sum_probs=74.7
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|+|.||||.. +||+.+|++||++|+|+||||+++- ..+.++...|+.|+.||.||||..+|+.
T Consensus 13 ~~d~YevLGVer---~a~~~eIrkAY~klal~~HPDk~~e------------ed~~ea~~kFq~l~k~y~iLsDeekR~~ 77 (264)
T KOG0719|consen 13 KKDLYEVLGVER---DATDKEIRKAYHKLALRLHPDKNHE------------EDKVEATEKFQQLQKAYQILSDEEKRAV 77 (264)
T ss_pred ccCHHHHhhhcc---cCCHHHHHHHHHHHHHHhCCCcchh------------hhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 349999999999 9999999999999999999999972 2366789999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCchHHhhhhhhc
Q 006420 173 YDSTDEFDDAIPADCAPQDFYKVFGPAFT 201 (646)
Q Consensus 173 YDs~~~~~~~~p~~~~~~~Ff~~f~~~F~ 201 (646)
||..|..++.. .+ -..++-++|..+|.
T Consensus 78 YDetG~idd~~-~d-~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 78 YDETGSIDDES-GD-IDEDWLEFWRAIYK 104 (264)
T ss_pred HhccCCCCCcc-ch-hhhHHHHHHHHHHh
Confidence 99998776321 11 12344455666554
No 34
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-15 Score=157.88 Aligned_cols=89 Identities=37% Similarity=0.597 Sum_probs=73.8
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
+.|||.||||+. ++|..+|++|||.++|+||||||++ ++.+.+.|+.|.+||+||+|+..|..
T Consensus 4 ~~dyY~lLgi~~---~at~~eIkKaYr~kaL~~HPDKNp~--------------dP~A~ekFq~L~eAy~VL~D~~~R~~ 66 (296)
T KOG0691|consen 4 DTDYYDLLGISE---DATDAEIKKAYRKKALQYHPDKNPG--------------DPQAAEKFQELSEAYEVLSDEESRAA 66 (296)
T ss_pred cchHHHHhCCCC---CCCHHHHHHHHHHHHHhcCCCCCCC--------------ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 689999999999 9999999999999999999999997 45589999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCchHHhhhhhhc
Q 006420 173 YDSTDEFDDAIPADCAPQDFYKVFGPAFT 201 (646)
Q Consensus 173 YDs~~~~~~~~p~~~~~~~Ff~~f~~~F~ 201 (646)
||..+...-... ...+-+++|+..|+
T Consensus 67 YDk~~k~~~~~~---~~~d~~~~~r~~f~ 92 (296)
T KOG0691|consen 67 YDKLRKSGSSAQ---GREDQADGFRKKFG 92 (296)
T ss_pred HHHHhhhcccch---hhhhHHHHHHHHhh
Confidence 999865332211 23344556666555
No 35
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.57 E-value=2.6e-15 Score=122.46 Aligned_cols=64 Identities=44% Similarity=0.793 Sum_probs=59.0
Q ss_pred cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD 174 (646)
Q Consensus 95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD 174 (646)
|||+||||+. +++.++|+++|+++++.+|||++++.. ..+...|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~---~~~~~eik~~y~~l~~~~HPD~~~~~~-------------~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP---DASDEEIKKAYRRLSKQYHPDKNSGDE-------------AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT---TSSHHHHHHHHHHHHHHTSTTTGTSTH-------------HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC---CCCHHHHHHHHHhhhhccccccchhhh-------------hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6999999999 999999999999999999999998521 346889999999999999999999998
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.6e-15 Score=157.52 Aligned_cols=86 Identities=36% Similarity=0.507 Sum_probs=72.1
Q ss_pred cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD 174 (646)
Q Consensus 95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD 174 (646)
|||+||||+. .||..|||.||++|+++||||.+.+ ..+.++|+.|.+|||||+|+.+|..||
T Consensus 44 d~Y~vLgv~~---~At~~EIK~Af~~LaKkyHPD~n~~---------------~~a~~kF~eI~~AYEiLsd~eKR~~YD 105 (288)
T KOG0715|consen 44 DYYKVLGVSR---NATLSEIKSAFRKLAKKYHPDVNKD---------------KEASKKFKEISEAYEILSDEEKRQEYD 105 (288)
T ss_pred chhhhhCcCC---CCCHHHHHHHHHHHHHhhCCCCCCC---------------cchhhHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999 9999999999999999999999994 367899999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCchHHhhhhhhcc
Q 006420 175 STDEFDDAIPADCAPQDFYKVFGPAFTR 202 (646)
Q Consensus 175 s~~~~~~~~p~~~~~~~Ff~~f~~~F~~ 202 (646)
..+... .....++++++|..+|+.
T Consensus 106 ~~~~~~----~~~~~g~~~~~~~~~~~~ 129 (288)
T KOG0715|consen 106 VYGLEQ----HGEFGGNPFDVFLEFFGG 129 (288)
T ss_pred Hhhhhc----cccccCCccchHHHhhcc
Confidence 986543 111223556666666665
No 37
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2e-15 Score=164.40 Aligned_cols=68 Identities=41% Similarity=0.691 Sum_probs=62.6
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+||++||||++++ ..+.+.|+.|++||+|||||.+|+.
T Consensus 4 ~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~a~~~f~~i~~Ay~~Lsd~~kR~~ 65 (378)
T PRK14283 4 KRDYYEVLGVDR---NADKKEIKKAYRKLARKYHPDVSEE---------------EGAEEKFKEISEAYAVLSDDEKRQR 65 (378)
T ss_pred cCChHHhhCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------ccHHHHHHHHHHHHHHhchhHHHHH
Confidence 579999999999 9999999999999999999999873 2367899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 66 YD~~G~ 71 (378)
T PRK14283 66 YDQFGH 71 (378)
T ss_pred Hhhhcc
Confidence 999875
No 38
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.56 E-value=3.9e-15 Score=160.95 Aligned_cols=66 Identities=50% Similarity=0.823 Sum_probs=60.8
Q ss_pred cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD 174 (646)
Q Consensus 95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD 174 (646)
|||+||||++ .||.++||+|||+|+++||||+++. ..+.+.|+.|++||+||+||.+|..||
T Consensus 1 d~y~~Lgv~~---~a~~~~ik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~vL~d~~~R~~yd 62 (354)
T TIGR02349 1 DYYEILGVSK---DASEEEIKKAYRKLAKKYHPDRNKD---------------KEAEEKFKEINEAYEVLSDPEKRAQYD 62 (354)
T ss_pred ChHHhCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------ccHHHHHHHHHHHHHHhhChHHHHhhh
Confidence 7999999999 9999999999999999999999862 235789999999999999999999999
Q ss_pred ccCC
Q 006420 175 STDE 178 (646)
Q Consensus 175 s~~~ 178 (646)
.++.
T Consensus 63 ~~g~ 66 (354)
T TIGR02349 63 QFGH 66 (354)
T ss_pred hccc
Confidence 9865
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.6e-15 Score=160.82 Aligned_cols=75 Identities=43% Similarity=0.692 Sum_probs=67.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
+..+.|||.+|||++ +||.+||++|||++++.|||||..++ ..+..+++.|..|+.||||||||.+
T Consensus 5 e~~e~e~Ya~LNlpk---dAt~eeI~~AYrr~~~lfHPDkh~dp-----------d~K~~AE~~F~~i~~AyEVLsDp~k 70 (546)
T KOG0718|consen 5 ELDEIELYALLNLPK---DATDEEIKKAYRRLSRLFHPDKHTDP-----------DQKKAAEEKFQRIQRAYEVLSDPQK 70 (546)
T ss_pred ccchhhHHHHhCCCc---ccCHHHHHHHHHHHHHhcCCcccCCh-----------hHHHHHHHHHHHHHHHHHHhcChHH
Confidence 456679999999999 99999999999999999999999852 2366789999999999999999999
Q ss_pred hhhhcccCC
Q 006420 170 RRIYDSTDE 178 (646)
Q Consensus 170 R~~YDs~~~ 178 (646)
|.+||.+|.
T Consensus 71 RaIYD~~G~ 79 (546)
T KOG0718|consen 71 RAIYDNYGE 79 (546)
T ss_pred HHHHHHhhh
Confidence 999999875
No 40
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=4.9e-15 Score=161.91 Aligned_cols=69 Identities=48% Similarity=0.804 Sum_probs=63.4
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ .||.++|++|||+|+++||||++++ ...+.++|+.|++||+||+||.+|+.
T Consensus 4 ~~~~y~~Lgv~~---~a~~~eik~ayr~la~~~HpD~~~~--------------~~~a~~~f~~i~~Ay~~L~d~~~R~~ 66 (386)
T PRK14289 4 KRDYYEVLGVSK---TATVDEIKKAYRKKAIQYHPDKNPG--------------DKEAEEKFKEAAEAYDVLSDPDKRSR 66 (386)
T ss_pred cCCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC--------------ChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 469999999999 9999999999999999999999974 33568899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 67 yD~~G~ 72 (386)
T PRK14289 67 YDQFGH 72 (386)
T ss_pred HHHhcc
Confidence 999865
No 41
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=6e-15 Score=160.04 Aligned_cols=69 Identities=48% Similarity=0.786 Sum_probs=62.9
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||..+||+|||+|+++||||+++.. ...+.+.|+.|++||+||+||.+|+.|
T Consensus 3 ~d~y~vLgv~~---~a~~~eik~ayr~la~~~HPD~~~~~-------------~~~a~~~f~~i~~Ay~~L~d~~~r~~y 66 (365)
T PRK14290 3 KDYYKILGVDR---NASQEDIKKAFRELAKKWHPDLHPGN-------------KAEAEEKFKEISEAYEVLSDPQKRRQY 66 (365)
T ss_pred CChhhhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCc-------------hhHHHHHHHHHHHHHHHhcChhhhhhh
Confidence 69999999999 99999999999999999999998741 224688999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 67 d~~G~ 71 (365)
T PRK14290 67 DQTGT 71 (365)
T ss_pred cccCC
Confidence 99875
No 42
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.7e-15 Score=163.05 Aligned_cols=68 Identities=49% Similarity=0.793 Sum_probs=62.7
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+||++||||++++ ...+.+.|+.|++||+||+||.+|+.|
T Consensus 1 ~d~y~iLgv~~---~a~~~eikkayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~kR~~Y 63 (391)
T PRK14284 1 MDYYTILGVSK---TASPEEIKKAYRKLAVKYHPDKNPG--------------DAEAEKRFKEVSEAYEVLSDAQKRESY 63 (391)
T ss_pred CCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------chHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 48999999999 9999999999999999999999984 234678999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 64 D~~G~ 68 (391)
T PRK14284 64 DRYGK 68 (391)
T ss_pred Hhccc
Confidence 99875
No 43
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=4.6e-15 Score=162.09 Aligned_cols=67 Identities=43% Similarity=0.727 Sum_probs=61.6
Q ss_pred ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
...|||+||||++ +||.++||+|||+|+++||||++++ ...+.+.|+.|++||+||+||.+|+
T Consensus 7 ~~~d~y~~Lgv~~---~a~~~eik~ayr~la~~~HPD~~~~--------------~~~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 7 IEKDYYKVLGVPK---DATEAEIKKAYRKLAREYHPDANKG--------------DAKAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cccCHHHhcCCCC---CCCHHHHHHHHHHHHHHHCCCcCCC--------------chhHHHHHHHHHHHHHHHCchhhHH
Confidence 4579999999999 9999999999999999999999874 2346889999999999999999999
Q ss_pred hhcc
Q 006420 172 IYDS 175 (646)
Q Consensus 172 ~YDs 175 (646)
.||.
T Consensus 70 ~yD~ 73 (389)
T PRK14295 70 EYDE 73 (389)
T ss_pred HHHH
Confidence 9998
No 44
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.1e-14 Score=158.47 Aligned_cols=67 Identities=43% Similarity=0.716 Sum_probs=62.0
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ .||.++||+|||+|+++||||+++. ..+.++|+.|++||+||+||.+|+.|
T Consensus 2 ~d~y~~Lgv~~---~a~~~~ik~ayr~l~~~~hpD~~~~---------------~~a~~~~~~i~~Ay~vL~d~~~r~~y 63 (371)
T PRK14292 2 MDYYELLGVSR---TASADEIKSAYRKLALKYHPDRNKE---------------KGAAEKFAQINEAYAVLSDAEKRAHY 63 (371)
T ss_pred CChHHHcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------hhHHHHHHHHHHHHHHhcchhhhhhH
Confidence 58999999999 9999999999999999999999973 23578999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 64 d~~G~ 68 (371)
T PRK14292 64 DRFGT 68 (371)
T ss_pred hhcCC
Confidence 99875
No 45
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.4e-14 Score=157.58 Aligned_cols=68 Identities=43% Similarity=0.711 Sum_probs=61.9
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ +||.++||+|||+|+++||||+++. ..++++|+.|++||+||+||.+|+.
T Consensus 2 ~~d~y~vLgv~~---~a~~~eik~ayr~la~~~HPD~~~~---------------~~a~~~f~~i~~Ay~vL~~~~~R~~ 63 (374)
T PRK14293 2 AADYYEILGVSR---DADKDELKRAYRRLARKYHPDVNKE---------------PGAEDRFKEINRAYEVLSDPETRAR 63 (374)
T ss_pred CCChhhhcCCCC---CCCHHHHHHHHHHHHHHHCCCCCCC---------------cCHHHHHHHHHHHHHHHhchHHHHH
Confidence 369999999999 9999999999999999999999873 2357899999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.++.
T Consensus 64 yd~~g~ 69 (374)
T PRK14293 64 YDQFGE 69 (374)
T ss_pred Hhhccc
Confidence 999865
No 46
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=2.7e-14 Score=155.35 Aligned_cols=67 Identities=40% Similarity=0.696 Sum_probs=61.4
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +||.++||+|||+++++||||+++. ..+.+.|+.|++||+||+||.+|..|
T Consensus 3 ~~~y~iLgv~~---~as~~eik~ayr~la~~~HPD~~~~---------------~~~~~~f~~i~~Ay~~L~d~~~r~~y 64 (372)
T PRK14300 3 QDYYQILGVSK---TASQADLKKAYLKLAKQYHPDTTDA---------------KDAEKKFKEINAAYDVLKDEQKRAAY 64 (372)
T ss_pred CChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------cCHHHHHHHHHHHHHHhhhHhHhhHH
Confidence 69999999999 9999999999999999999999863 12567999999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 65 D~~G~ 69 (372)
T PRK14300 65 DRFGH 69 (372)
T ss_pred Hhccc
Confidence 99865
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.45 E-value=8.7e-14 Score=132.46 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=60.0
Q ss_pred ccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420 94 QDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
..+|+||||++ +| |..+||+|||+++++||||++++ ++.|+.|++||++|+|+.+|.
T Consensus 5 ~~l~~vLGl~~---~A~~s~~eIKkAYr~la~~~HPDkgg~------------------~e~~k~in~Ay~~L~d~~~r~ 63 (153)
T PHA03102 5 KELMDLLGLPR---SAWGNLPLMRKAYLRKCLEFHPDKGGD------------------EEKMKELNTLYKKFRESVKSL 63 (153)
T ss_pred HHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHHCcCCCch------------------hHHHHHHHHHHHHHhhHHHhc
Confidence 46899999999 99 99999999999999999999752 468999999999999999999
Q ss_pred hhcccCCCC
Q 006420 172 IYDSTDEFD 180 (646)
Q Consensus 172 ~YDs~~~~~ 180 (646)
.||.++...
T Consensus 64 ~yd~~g~~~ 72 (153)
T PHA03102 64 RDLDGEEDS 72 (153)
T ss_pred cccccCCcc
Confidence 999987644
No 48
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.41 E-value=2.5e-13 Score=109.04 Aligned_cols=59 Identities=53% Similarity=0.847 Sum_probs=52.9
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~ 168 (646)
+|||+||||++ .++.++|+++|+++++.+|||++++. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~---~~~~~~ik~ay~~l~~~~HPD~~~~~-------------~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPR---DASLDEIKKAYRKLALKYHPDKNPGD-------------KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCCc-------------hHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999 89999999999999999999999841 2346889999999999999985
No 49
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.9e-13 Score=142.99 Aligned_cols=93 Identities=40% Similarity=0.648 Sum_probs=76.8
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
..+..|||.||||+. .++..+|++|||+++|.||||++.+. ..+++..|+.|.+||.||+||.+
T Consensus 369 kSkRkd~ykilGi~~---~as~~eikkayrk~AL~~Hpd~~ags-------------q~eaE~kFkevgeAy~il~d~~k 432 (486)
T KOG0550|consen 369 KSKRKDWYKILGISR---NASDDEIKKAYRKLALVHHPDKNAGS-------------QKEAEAKFKEVGEAYTILSDPMK 432 (486)
T ss_pred HhhhhhHHHHhhhhh---hcccchhhhHHHHHHHHhCCCcCcch-------------hHHHHHHHHHHHHHHHHhcCHHH
Confidence 456789999999999 99999999999999999999999863 35678999999999999999999
Q ss_pred hhhhcccCCCCCCCCCCCCCCchHHhhhhh
Q 006420 170 RRIYDSTDEFDDAIPADCAPQDFYKVFGPA 199 (646)
Q Consensus 170 R~~YDs~~~~~~~~p~~~~~~~Ff~~f~~~ 199 (646)
|..||+.-...+... ..+.-+||.+|+.+
T Consensus 433 r~r~dsg~dle~~~~-~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 433 RVRFDSGQDLEEVGS-GGAGFDPFNIFRAF 461 (486)
T ss_pred HhhcccccchhhhcC-CCcCcChhhhhhhc
Confidence 999999754433222 22455677777665
No 50
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.38 E-value=5.3e-13 Score=105.13 Aligned_cols=55 Identities=51% Similarity=0.866 Sum_probs=50.3
Q ss_pred cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 006420 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID 166 (646)
Q Consensus 95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsD 166 (646)
|||+||||+. .+|.++|+++|+++++.+|||++++ ...+...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~---~~~~~~ik~~y~~l~~~~HPD~~~~--------------~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP---DASDEEIKKAYRKLALKYHPDKNPD--------------DPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC--------------cHHHHHHHHHHHHHHHHhcC
Confidence 6999999998 9999999999999999999999984 13468899999999999997
No 51
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.38 E-value=4.9e-13 Score=139.34 Aligned_cols=78 Identities=38% Similarity=0.637 Sum_probs=67.9
Q ss_pred CCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhh
Q 006420 90 GSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVK 169 (646)
Q Consensus 90 ~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~k 169 (646)
....+|||.||||.+ +|+..+|.+|||+++++||||-..+ +.++..++.+|..|.-|-+||+||.+
T Consensus 390 qs~kRDYYKILGVkR---nAsKqEI~KAYRKlAqkWHPDNFqd-----------EeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKR---NASKQEITKAYRKLAQKWHPDNFQD-----------EEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred HhccchHHHHhhhcc---cccHHHHHHHHHHHHHhcCCccccC-----------HHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 455689999999999 9999999999999999999999885 22356689999999999999999999
Q ss_pred hhhhccc-CCCCC
Q 006420 170 RRIYDST-DEFDD 181 (646)
Q Consensus 170 R~~YDs~-~~~~~ 181 (646)
|+.||.. ||.|.
T Consensus 456 RrqFDnGeDPLD~ 468 (504)
T KOG0624|consen 456 RRQFDNGEDPLDP 468 (504)
T ss_pred HhhccCCCCCCCh
Confidence 9999986 34443
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.37 E-value=6.3e-13 Score=150.70 Aligned_cols=67 Identities=39% Similarity=0.677 Sum_probs=61.4
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ +|+..+||++||+|+++||||++++ ..+...|+.|++||++|+||.+|..|
T Consensus 2 ~DYYeVLGVs~---dAS~eEIKKAYRKLAKKyHPDKn~~---------------~eAeekFqeINEAYEVLSDP~KRa~Y 63 (871)
T TIGR03835 2 RDYYEVLGIDR---DADEQEIKKAFRKLAKKYHPDRNKA---------------PDAASIFAEINEANDVLSNPKKRANY 63 (871)
T ss_pred CChhHhcCCCC---CCCHHHHHHHHHHHHHHHCcCCCCC---------------hhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58999999999 9999999999999999999999873 23567899999999999999999999
Q ss_pred cccCC
Q 006420 174 DSTDE 178 (646)
Q Consensus 174 Ds~~~ 178 (646)
|.++.
T Consensus 64 D~fG~ 68 (871)
T TIGR03835 64 DKYGH 68 (871)
T ss_pred hhhcc
Confidence 99765
No 53
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.8e-13 Score=130.24 Aligned_cols=74 Identities=36% Similarity=0.630 Sum_probs=65.5
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
.+.-|+|+||||++ .+|+.+||+|||+|+++|||||++. ....++.|..|.+||..|+|+..|
T Consensus 96 ~~~fDPyEILGl~p---gas~~eIKkaYR~LSik~HPDK~~~--------------~~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 96 RQKFDPYEILGLDP---GASEKEIKKAYRRLSIKYHPDKQPP--------------EEGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred hhcCCcHHhhCCCC---CCCHHHHHHHHHHhhhhhCCCcCCC--------------cchhHHHHHHHHHHHHHhcchhhH
Confidence 34569999999999 9999999999999999999999984 134578999999999999999999
Q ss_pred hhhcccCCCCC
Q 006420 171 RIYDSTDEFDD 181 (646)
Q Consensus 171 ~~YDs~~~~~~ 181 (646)
..|..++..|.
T Consensus 159 eN~ekYG~PDG 169 (230)
T KOG0721|consen 159 ENWEKYGNPDG 169 (230)
T ss_pred HHHHHhCCCCC
Confidence 99999887543
No 54
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=2.8e-12 Score=125.05 Aligned_cols=73 Identities=27% Similarity=0.425 Sum_probs=61.4
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
+|||+||||++ .|.++..+|+++||+++++||||+..+... .....+...|..|++||+||+||.+|..|
T Consensus 1 ~~yf~llgl~~-~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~---------~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Y 70 (171)
T PRK05014 1 MDYFTLFGLPA-RYDIDTQLLASRYQELQRQFHPDKFANASE---------RERLLAVQQAATINDAYQTLKHPLKRAEY 70 (171)
T ss_pred CCHHHHCCCCC-CCCCCHHHHHHHHHHHHHHhCcCCCCCCcH---------HHHHHHHHHHHHHHHHHHHHCChhHHHHH
Confidence 48999999987 567899999999999999999999874211 11334678999999999999999999999
Q ss_pred ccc
Q 006420 174 DST 176 (646)
Q Consensus 174 Ds~ 176 (646)
+..
T Consensus 71 ll~ 73 (171)
T PRK05014 71 LLS 73 (171)
T ss_pred HHH
Confidence 864
No 55
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.2e-12 Score=127.32 Aligned_cols=70 Identities=43% Similarity=0.717 Sum_probs=62.9
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
....|||+||||++ +|+..+|+++||+++++||||++++.. ..+.+.|..|++||+||+|+.+|
T Consensus 3 ~~~~~~y~iLgv~~---~as~~eik~ayrkla~~~HPD~~~~~~-------------~~a~~~f~~i~~Ay~vLsd~~~r 66 (237)
T COG2214 3 SDLLDYYEILGVPP---NASLEEIKKAYRKLALKYHPDRNPGDP-------------KVAEEKFKEINEAYEILSDPERR 66 (237)
T ss_pred hhhhhHHHHhCCCC---CCCHHHHHHHHHHHHHHhCCCCCCCch-------------hHHHHHHHHHHHHHHHhhCHHHH
Confidence 35679999999998 999999999999999999999999521 13689999999999999999999
Q ss_pred hhhccc
Q 006420 171 RIYDST 176 (646)
Q Consensus 171 ~~YDs~ 176 (646)
..||..
T Consensus 67 ~~yd~~ 72 (237)
T COG2214 67 AEYDKI 72 (237)
T ss_pred HHhhhh
Confidence 999985
No 56
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=3.3e-12 Score=123.89 Aligned_cols=72 Identities=32% Similarity=0.460 Sum_probs=60.7
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||+||||++ .|.++..+|+++||+++++||||+..+. . ....+...|..|++||+||+||.+|..|
T Consensus 2 ~~yf~llgl~~-~f~id~~~L~~aYr~lq~~~HPDk~~~~--~---------~k~~~~~~s~~in~AY~~L~dp~~Ra~Y 69 (166)
T PRK01356 2 QNYFQLLGLPQ-EYNIDLKILEKQYFAMQVKYHPDKAKTL--Q---------EKEQNLIIASELNNAYSTLKDALKRAEY 69 (166)
T ss_pred CCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCH--H---------HHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58999999998 4668999999999999999999998631 0 1233456799999999999999999999
Q ss_pred cccC
Q 006420 174 DSTD 177 (646)
Q Consensus 174 Ds~~ 177 (646)
+...
T Consensus 70 lL~l 73 (166)
T PRK01356 70 MLLL 73 (166)
T ss_pred HHHc
Confidence 8753
No 57
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.26 E-value=7.4e-12 Score=122.13 Aligned_cols=75 Identities=28% Similarity=0.369 Sum_probs=64.2
Q ss_pred ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
..+|||++|||++ .|..+..+|+++||+++++||||+..+... .....+...|..|++||.||+||.+|.
T Consensus 2 ~~~~~F~l~~l~~-~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~---------~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 2 GTPCHFALFDLQP-SFRLDLDQLATRYRELAREVHPDRFADAPE---------REQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCChhhhcCcCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCcH---------HHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 4689999999997 788999999999999999999999875311 113456788999999999999999999
Q ss_pred hhccc
Q 006420 172 IYDST 176 (646)
Q Consensus 172 ~YDs~ 176 (646)
.|+..
T Consensus 72 ~YlL~ 76 (173)
T PRK00294 72 RYLLA 76 (173)
T ss_pred HHHHH
Confidence 99974
No 58
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=1.3e-11 Score=120.87 Aligned_cols=74 Identities=34% Similarity=0.497 Sum_probs=62.2
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||+||||++ .|.++..+|+++||+++++||||+.++... .....+.+.+..|++||.+|+||.+|..
T Consensus 5 ~~dyf~llglp~-~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~---------~e~~~a~~~s~~iN~AY~tL~~p~~Ra~ 74 (176)
T PRK03578 5 KDDHFSLFGLPA-RFALDEAALDAAYRTVQAQVHPDRFAAAGD---------AEKRVAMQWATRANEAYQTLRDPLKRAR 74 (176)
T ss_pred CCCHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHCcCCCCCCCH---------HHHHHHHHHHHHHHHHHHHhCChhhHHH
Confidence 379999999998 577899999999999999999999874211 1133456778999999999999999999
Q ss_pred hccc
Q 006420 173 YDST 176 (646)
Q Consensus 173 YDs~ 176 (646)
|+..
T Consensus 75 Yll~ 78 (176)
T PRK03578 75 YLLH 78 (176)
T ss_pred HHHH
Confidence 9864
No 59
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.4e-11 Score=130.81 Aligned_cols=68 Identities=40% Similarity=0.609 Sum_probs=63.1
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
.+..|+|.+|||+. ++++++||+.||++|...|||||. .+.+++.|+.++.||++|+|+.+|
T Consensus 232 ~~~~daYsvlGl~~---d~sd~~lKk~Yrk~A~LVhPDKn~---------------~~~A~Eafk~Lq~Afevig~~~kR 293 (490)
T KOG0720|consen 232 LNILDAYSALGLPS---DCSDADLKKNYRKKAMLVHPDKNM---------------IPRAEEAFKKLQVAFEVIGDSVKR 293 (490)
T ss_pred hcCCCchhhcCCCC---CCCHHHHHHHHHhhceEeCCCccC---------------ChhHHHHHHHHHHHHHHhcchhhh
Confidence 34789999999998 999999999999999999999998 356789999999999999999999
Q ss_pred hhhccc
Q 006420 171 RIYDST 176 (646)
Q Consensus 171 ~~YDs~ 176 (646)
..||..
T Consensus 294 ~eYd~e 299 (490)
T KOG0720|consen 294 KEYDLE 299 (490)
T ss_pred hHHHHH
Confidence 999974
No 60
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.10 E-value=1.2e-10 Score=128.66 Aligned_cols=101 Identities=24% Similarity=0.537 Sum_probs=90.7
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..+.||.||+..|+..|...-.|..-.|.+|-.||+ ||+..+.|.||-..|
T Consensus 304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~L---------------------------- 354 (939)
T KOG0049|consen 304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTL---------------------------- 354 (939)
T ss_pred HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-Ccchhhhhhhheecc----------------------------
Confidence 357899999999999999999999889999999998 799999999997543
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|+.+.++||.+||.+|..|+..|+ +..|-+|-
T Consensus 355 --------------------------------------------dPsikhg~wt~~ED~~L~~AV~~Yg---~kdw~k~R 387 (939)
T KOG0049|consen 355 --------------------------------------------DPSVKHGRWTDQEDVLLVCAVSRYG---AKDWAKVR 387 (939)
T ss_pred --------------------------------------------CccccCCCCCCHHHHHHHHHHHHhC---ccchhhHH
Confidence 3445667899999999999999998 56899999
Q ss_pred hhCCCCCHHHHHHHHHH
Q 006420 618 TAVPGKTVIQCKKKFAS 634 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~ 634 (646)
..|||||..||+.||--
T Consensus 388 ~~vPnRSdsQcR~RY~n 404 (939)
T KOG0049|consen 388 QAVPNRSDSQCRERYTN 404 (939)
T ss_pred HhcCCccHHHHHHHHHH
Confidence 99999999999999954
No 61
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.8e-11 Score=119.13 Aligned_cols=70 Identities=31% Similarity=0.541 Sum_probs=62.6
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
+-..|+|+||||++ .++..+|.+|||+|+++||||++++ .+....|..|..||++|.|...|
T Consensus 30 CG~enCYdVLgV~R---ea~KseIakAYRqLARrhHPDr~r~---------------~e~k~~F~~iAtayeilkd~e~r 91 (329)
T KOG0722|consen 30 CGAENCYDVLGVAR---EANKSEIAKAYRQLARRHHPDRNRD---------------PESKKLFVKIATAYEILKDNETR 91 (329)
T ss_pred ccchhHHHHhhhhh---hccHHHHHHHHHHHHHHhCCcccCC---------------chhhhhhhhhhcccccccchhhH
Confidence 34578999999999 9999999999999999999999995 23458999999999999999999
Q ss_pred hhhcccCC
Q 006420 171 RIYDSTDE 178 (646)
Q Consensus 171 ~~YDs~~~ 178 (646)
..||-...
T Consensus 92 t~ydyald 99 (329)
T KOG0722|consen 92 TQYDYALD 99 (329)
T ss_pred HhHHHHhc
Confidence 99998643
No 62
>PHA02624 large T antigen; Provisional
Probab=99.00 E-value=4.4e-10 Score=126.75 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=55.8
Q ss_pred cccccccccccccCCCC--CHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhh
Q 006420 93 QQDHYALLGLSHLRYLA--TEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKR 170 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~A--t~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR 170 (646)
-.++|+||||++ +| +..+||+|||+++++||||+.++ .+.|+.|+.||++|+|+.+|
T Consensus 10 ~~elyelLGL~~---~A~gs~~eIKkAYRkLAkkyHPDKgGd------------------eekfk~Ln~AYevL~d~~k~ 68 (647)
T PHA02624 10 SKELMDLLGLPM---AAWGNLPLMRKAYLRKCKEYHPDKGGD------------------EEKMKRLNSLYKKLQEGVKS 68 (647)
T ss_pred HHHHHHHcCCCC---CCCCCHHHHHHHHHHHHHHHCcCCCCc------------------HHHHHHHHHHHHHHhcHHHh
Confidence 358999999999 89 99999999999999999999642 46899999999999999999
Q ss_pred hhhc
Q 006420 171 RIYD 174 (646)
Q Consensus 171 ~~YD 174 (646)
..|.
T Consensus 69 ~r~~ 72 (647)
T PHA02624 69 ARQS 72 (647)
T ss_pred hhcc
Confidence 9993
No 63
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.98 E-value=8.3e-10 Score=85.20 Aligned_cols=45 Identities=29% Similarity=0.851 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHHHHH
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKFASL 635 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ryk~l 635 (646)
.+||.+|+.+|.+|+..||.+ +|..||..|| |||..||+.||..|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 379999999999999999854 7999999999 99999999999876
No 64
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.97 E-value=4.9e-10 Score=116.81 Aligned_cols=66 Identities=26% Similarity=0.453 Sum_probs=55.2
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcc
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLID 166 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsD 166 (646)
..-.|+|+||||++ ++|.++||++||+|+++||||+..+.+.++ ...+.++++|+.|+.||++|+.
T Consensus 197 ~~~~~ay~vLgv~~---~as~~eIk~aYr~L~~~~HPDk~~~~g~~~-------~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSE---SDDDQEIKRAYRKLMSEHHPDKLVAKGLPP-------EMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCC---CCCHHHHHHHHHHHHHHhCcCCCCCCCCCh-------hhHHHHHHHHHHHHHHHHHHHH
Confidence 45579999999999 999999999999999999999986543332 1134578999999999999985
No 65
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.8e-10 Score=116.73 Aligned_cols=70 Identities=51% Similarity=0.872 Sum_probs=61.6
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
..|||.||||.. .|+..+|++||+++++++|||+++.. ...+...|+.|.+||++|+||.+|..
T Consensus 2 ~~d~~~~l~i~~---~as~~~i~ka~~~~a~~~hpdk~~~~-------------~~~~~~~~~~~~ea~~~ls~~~kr~~ 65 (306)
T KOG0714|consen 2 GKDYYKILGIAR---SASEEDIKKAYRKLALKYHPDKNPSP-------------KEVAEAKFKEIAEAYEVLSDPKKRKI 65 (306)
T ss_pred cccHHHHhCccc---cccHHHHHHHHHHHHHhhCCCCCCCc-------------hhhHHHHHhhhhccccccCCHHHhhh
Confidence 468999999997 89999999999999999999997742 12344589999999999999999999
Q ss_pred hcccCC
Q 006420 173 YDSTDE 178 (646)
Q Consensus 173 YDs~~~ 178 (646)
||.+++
T Consensus 66 ~d~~~~ 71 (306)
T KOG0714|consen 66 YDQYGE 71 (306)
T ss_pred ccccCc
Confidence 999876
No 66
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.95 E-value=6.4e-10 Score=101.10 Aligned_cols=52 Identities=27% Similarity=0.506 Sum_probs=46.7
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhc
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLI 165 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLs 165 (646)
..++|+||||++ ++|.++|+++||+++++||||+..+ ...|..|++||++|.
T Consensus 64 ~~eAy~ILGv~~---~As~~eIkkaYRrLa~~~HPDkgGs------------------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISP---TASKERIREAHKQLMLRNHPDNGGS------------------TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC------------------HHHHHHHHHHHHHHh
Confidence 479999999999 9999999999999999999998532 457899999999995
No 67
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.7e-09 Score=116.02 Aligned_cols=77 Identities=32% Similarity=0.584 Sum_probs=67.2
Q ss_pred cccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhh
Q 006420 93 QQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRI 172 (646)
Q Consensus 93 ~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~ 172 (646)
--|+|+||||+. +++..+||++||+|+.++||||.+. .+.+ ...+-+++++.|++||+.|+|...|..
T Consensus 97 ~fDPyEILGI~~---~ts~rdik~~yr~Ls~KfhpdK~~~-mvn~--------~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 97 GFDPYEILGIDQ---DTSERDIKKRYRMLSMKFHPDKAPP-MVNE--------LRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred CCChHHhhcccC---CCcHHHHHHHHHhheeecChhhcCC-CChh--------HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 358999999999 9999999999999999999999986 2222 255678999999999999999999999
Q ss_pred hcccCCCCC
Q 006420 173 YDSTDEFDD 181 (646)
Q Consensus 173 YDs~~~~~~ 181 (646)
|=.+|..|.
T Consensus 165 yl~yGtPd~ 173 (610)
T COG5407 165 YLNYGTPDS 173 (610)
T ss_pred HHhcCCCCC
Confidence 999887554
No 68
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.7e-08 Score=93.52 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=64.6
Q ss_pred CCCCccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcch
Q 006420 88 GEGSNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP 167 (646)
Q Consensus 88 ~~~~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp 167 (646)
|+.+.+.|+|+||.|.+ ..+.++||+.||+|++..|||||++. .+.+...|-.|.+||.+|-|+
T Consensus 47 gstyfnLNpfeVLqIdp---ev~~edikkryRklSilVHPDKN~Dd-------------~~rAqkAFdivkKA~k~l~n~ 110 (250)
T KOG1150|consen 47 GSTYFNLNPFEVLQIDP---EVTDEDIKKRYRKLSILVHPDKNPDD-------------AERAQKAFDIVKKAYKLLEND 110 (250)
T ss_pred CccccccChHHHHhcCC---CCCHHHHHHHHHhhheeecCCCCccc-------------HHHHHHHHHHHHHHHHHHhCH
Confidence 56789999999999999 99999999999999999999999963 456789999999999999999
Q ss_pred hhhhhhcc
Q 006420 168 VKRRIYDS 175 (646)
Q Consensus 168 ~kR~~YDs 175 (646)
.-|...+.
T Consensus 111 ~~rkr~~~ 118 (250)
T KOG1150|consen 111 KIRKRCLD 118 (250)
T ss_pred HHHHHHHH
Confidence 87776554
No 69
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.84 E-value=4.3e-09 Score=102.84 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=62.0
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIY 173 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~Y 173 (646)
.|||++|||++ +|..+...|++.|+.+...+|||+..+.+. ..+..+.+.-..|++||.||+||.+|..|
T Consensus 2 ~nyF~lf~lp~-~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~---------~eq~~a~~~ss~iN~AY~tLkdPl~RA~Y 71 (173)
T PRK01773 2 NNPFALFDLPV-DFQLDNALLSERYLALQKSLHPDNFANSSA---------QEQRLAMQKSAEVNDALQILKDPILRAEA 71 (173)
T ss_pred CChHHhcCCCC-CCCCCHHHHHHHHHHHHHHhCcCcccCCCH---------HHHHHHHHHHHHHHHHHHHHCChHHHHHH
Confidence 68999999998 788999999999999999999999875321 12445677889999999999999999999
Q ss_pred cc
Q 006420 174 DS 175 (646)
Q Consensus 174 Ds 175 (646)
=.
T Consensus 72 LL 73 (173)
T PRK01773 72 II 73 (173)
T ss_pred HH
Confidence 54
No 70
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.82 E-value=8.8e-09 Score=79.48 Aligned_cols=46 Identities=28% Similarity=0.579 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
++||.+|+.+|..+|..||.+ +|..||..||++||..||..+|..+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 589999999999999999665 7999999999779999999999875
No 71
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.72 E-value=3.6e-08 Score=79.34 Aligned_cols=43 Identities=37% Similarity=0.662 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420 462 WSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 462 Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
||.+|+.+|..+|..| |. .|..||.+|| .||..+|..||..+|
T Consensus 1 WT~eEd~~L~~~~~~~--g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY--GN--DWKKIAEHLG-NRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHH--TS---HHHHHHHST-TS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHH--Cc--CHHHHHHHHC-cCCHHHHHHHHHHHC
Confidence 9999999999999999 42 6999999996 699999999999854
No 72
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.66 E-value=2.9e-08 Score=95.70 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhcccC
Q 006420 107 YLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYDSTD 177 (646)
Q Consensus 107 ~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YDs~~ 177 (646)
|..+..+|+++||+++++||||+.++.+. ..+..+...|..|++||+||+||.+|..|+...
T Consensus 1 f~iD~~~L~~~yr~lq~~~HPD~~~~~~~---------~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 1 YQLDTQALSLRYQDLQRQYHPDKFASGSA---------QEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCh---------hhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 45677999999999999999999764221 113446789999999999999999999999864
No 73
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.66 E-value=5e-08 Score=73.77 Aligned_cols=46 Identities=28% Similarity=0.793 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
.+||++|+.+|..++..||. .+|..||..+|+||..+|+.||..|.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47999999999999999973 47999999999999999999998764
No 74
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.58 E-value=1.1e-07 Score=70.79 Aligned_cols=44 Identities=32% Similarity=0.852 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420 589 AWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 589 ~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
+||.+|+..|..++..||. ..|..||..||+||..+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 5999999999999999983 4699999999999999999999875
No 75
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=1.1e-07 Score=103.53 Aligned_cols=103 Identities=23% Similarity=0.516 Sum_probs=88.4
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
+.+.|+.-|++.|.-+|.+| |++ .|..|+..++ ..|+++|..+|-+++
T Consensus 6 kggvwrntEdeilkaav~ky--g~n-qws~i~sll~-~kt~rqC~~rw~e~l---------------------------- 53 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKY--GKN-QWSRIASLLN-RKTARQCKARWEEWL---------------------------- 53 (617)
T ss_pred ecceecccHHHHHHHHHHHc--chH-HHHHHHHHHh-hcchhHHHHHHHHHh----------------------------
Confidence 56789999999999999999 665 5999999997 589999999999875
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
+|.+....||.+|+..|..+-+.+|. -|.-||
T Consensus 54 --------------------------------------------dp~i~~tews~eederlLhlakl~p~----qwrtIa 85 (617)
T KOG0050|consen 54 --------------------------------------------DPAIKKTEWSREEDERLLHLAKLEPT----QWRTIA 85 (617)
T ss_pred --------------------------------------------CHHHhhhhhhhhHHHHHHHHHHhcCC----ccchHH
Confidence 22334457999999999999999974 699999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHhh
Q 006420 618 TAVPGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~~~vk~ 641 (646)
..| |||..||..||..|+...-+
T Consensus 86 ~i~-gr~~~qc~eRy~~ll~~~~s 108 (617)
T KOG0050|consen 86 DIM-GRTSQQCLERYNNLLDVYVS 108 (617)
T ss_pred HHh-hhhHHHHHHHHHHHHHHHHh
Confidence 776 79999999999999986544
No 76
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.48 E-value=4.1e-07 Score=101.25 Aligned_cols=98 Identities=24% Similarity=0.492 Sum_probs=83.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
+.++||++|+.+|..||.+| |. ..|-.|-+.|+ ||+.-||+.||.++|-+.
T Consensus 359 khg~wt~~ED~~L~~AV~~Y--g~-kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s------------------------- 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRY--GA-KDWAKVRQAVP-NRSDSQCRERYTNVLNRS------------------------- 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHh--Cc-cchhhHHHhcC-CccHHHHHHHHHHHHHHh-------------------------
Confidence 57899999999999999999 33 46999999999 699999999999987221
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.+.+-||-.|+..|..++.+||+| .|-+||
T Consensus 410 -----------------------------------------------~K~~rW~l~edeqL~~~V~~YG~g---~WakcA 439 (939)
T KOG0049|consen 410 -----------------------------------------------AKVERWTLVEDEQLLYAVKVYGKG---NWAKCA 439 (939)
T ss_pred -----------------------------------------------hccCceeecchHHHHHHHHHHccc---hHHHHH
Confidence 012369999999999999999987 799999
Q ss_pred hhCCCCCHHH---HHHHHHH
Q 006420 618 TAVPGKTVIQ---CKKKFAS 634 (646)
Q Consensus 618 ~~Vpgrt~~~---c~~Ryk~ 634 (646)
..+|.+|-+| |+.|+..
T Consensus 440 ~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 440 MLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HHccccchhHHHHHHHHHHH
Confidence 9999999965 6666543
No 77
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.34 E-value=5.6e-07 Score=72.41 Aligned_cols=43 Identities=21% Similarity=0.682 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHH-HH
Q 006420 590 WSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFAS-LK 636 (646)
Q Consensus 590 WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~-l~ 636 (646)
||.+|+.+|..++..|+ ..|..||..+|.||..+|+.||.. |.
T Consensus 1 WT~eEd~~L~~~~~~~g----~~W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG----NDWKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHT----S-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHC----cCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 99999999999999996 369999999977999999999998 64
No 78
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.31 E-value=1e-06 Score=98.38 Aligned_cols=104 Identities=19% Similarity=0.392 Sum_probs=88.1
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
+.+.|+..|+..|..+|..| |+.+ |.+||..++ .+++++|..+|.+++
T Consensus 19 k~gsw~~~EDe~l~~~vk~l--~~nn-ws~vas~~~-~~~~kq~~~rw~~~l---------------------------- 66 (512)
T COG5147 19 KGGSWKRTEDEDLKALVKKL--GPNN-WSKVASLLI-SSTGKQSSNRWNNHL---------------------------- 66 (512)
T ss_pred cCCCCCCcchhHHHHHHhhc--cccc-HHHHHHHhc-ccccccccchhhhhh----------------------------
Confidence 45689999999999999999 5544 999999997 589999999997764
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVA 617 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA 617 (646)
.|......||.+|+..|..+-..+| .+|.-||
T Consensus 67 --------------------------------------------np~lk~~~~~~eed~~li~l~~~~~----~~wstia 98 (512)
T COG5147 67 --------------------------------------------NPQLKKKNWSEEEDEQLIDLDKELG----TQWSTIA 98 (512)
T ss_pred --------------------------------------------chhcccccccHHHHHHHHHHHHhcC----chhhhhc
Confidence 1222335799999999999999996 5799999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHhh
Q 006420 618 TAVPGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 618 ~~Vpgrt~~~c~~Ryk~l~~~vk~ 641 (646)
..|||+|..+|.+||-.+.+..-+
T Consensus 99 ~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 99 DYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred cccCccchHHHHHHHHHHhhhhhc
Confidence 999999999999999887766543
No 79
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.21 E-value=3.1e-06 Score=63.81 Aligned_cols=45 Identities=33% Similarity=0.571 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
.+||.+|+.+|..++..|+. .+|..||..|+ +||..+|..+|..+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---~~w~~Ia~~~~-~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---NNWEKIAKELP-GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 57999999999999999953 36999999998 69999999999875
No 80
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.14 E-value=5e-06 Score=61.74 Aligned_cols=44 Identities=34% Similarity=0.674 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 461 PWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 461 ~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
+||.+|+.+|.+++..|+. .+|..||..|+ +||..+|..+|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~-~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP-GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC-CCCHHHHHHHHHHh
Confidence 5999999999999999954 36999999998 49999999999764
No 81
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.98 E-value=8.2e-06 Score=82.95 Aligned_cols=54 Identities=15% Similarity=0.360 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-CCCCHHHHHHHHH-HHHHHH
Q 006420 583 SSSDQDAWSAVQERALVQALKTFPKETSQRWERVATAV-PGKTVIQCKKKFA-SLKENF 639 (646)
Q Consensus 583 ~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-pgrt~~~c~~Ryk-~l~~~v 639 (646)
+.....+||++||.+|..+++.|+. .+|..||..+ ||||.+||+.||. +|.-.|
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I 76 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV 76 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhhcCCCcchHHHHHHHhhchhc
Confidence 3445678999999999999999984 5899999987 6999999999995 443333
No 82
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=1e-05 Score=94.26 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=51.0
Q ss_pred CCCCCCccccccccccccccCCCCC-HHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHh
Q 006420 86 KSGEGSNQQDHYALLGLSHLRYLAT-EDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL 164 (646)
Q Consensus 86 ~~~~~~k~~d~Y~vLGl~~~r~~At-~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiL 164 (646)
++|.....-+-|+||.|+..--..+ .+.||++|++|+.+||||||+. ..++|..+++|||.|
T Consensus 1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----------------GRemFe~VnKAYE~L 1335 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----------------GREMFERVNKAYELL 1335 (2235)
T ss_pred cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----------------HHHHHHHHHHHHHHH
Confidence 3455666678999999975322233 3789999999999999999983 367999999999999
Q ss_pred cc
Q 006420 165 ID 166 (646)
Q Consensus 165 sD 166 (646)
+.
T Consensus 1336 ~~ 1337 (2235)
T KOG1789|consen 1336 SS 1337 (2235)
T ss_pred HH
Confidence 93
No 83
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=97.86 E-value=5.5e-05 Score=85.55 Aligned_cols=103 Identities=25% Similarity=0.457 Sum_probs=82.1
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLT 537 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~ 537 (646)
..+-||++|++.|.+.|..+ |+ .|..|+..|| |.+..|+.+|..+..+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~--g~--~W~~Ig~~lg--r~P~~crd~wr~~~~~-------------------------- 430 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEH--GN--DWKEIGKALG--RMPMDCRDRWRQYVKC-------------------------- 430 (607)
T ss_pred ccCCCCcchHHHHHHHHHHh--cc--cHHHHHHHHc--cCcHHHHHHHHHhhcc--------------------------
Confidence 56789999999999999999 54 6999999994 9999999999985310
Q ss_pred chhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHH-------hC-----
Q 006420 538 TREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALK-------TF----- 605 (646)
Q Consensus 538 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~-------~~----- 605 (646)
+......+||-+|...|.+++. .|
T Consensus 431 --------------------------------------------g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~ 466 (607)
T KOG0051|consen 431 --------------------------------------------GSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNT 466 (607)
T ss_pred --------------------------------------------ccccccCcchHHHHHHHHHHHHHHHHHhhccccccc
Confidence 1112345799999999999984 22
Q ss_pred -------CCC---CChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420 606 -------PKE---TSQRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 606 -------p~~---~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
|.+ .+=-|.-|++.+.+|+.-||+.+|..|+
T Consensus 467 ~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~ 507 (607)
T KOG0051|consen 467 DTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLT 507 (607)
T ss_pred chhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHH
Confidence 221 2347999999999999999999987765
No 84
>PLN03091 hypothetical protein; Provisional
Probab=97.54 E-value=8.3e-05 Score=81.05 Aligned_cols=45 Identities=13% Similarity=0.437 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC-CCCCHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAV-PGKTVIQCKKKFA 633 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V-pgrt~~~c~~Ryk 633 (646)
....||++||.+|..++.+||. ..|..||..+ ||||.+||+.||.
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g~gRT~KQCRERW~ 58 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAGLQRCGKSCRLRWI 58 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhccCcCcchHhHHHH
Confidence 4468999999999999999985 4799999877 5999999999996
No 85
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.35 E-value=0.00018 Score=78.38 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
...+||..|--+|..||.+|+ +.|++||..|..||++||+-||-.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg----DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG----DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh----hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 446899999999999999995 7899999999999999999999654
No 86
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00017 Score=72.14 Aligned_cols=58 Identities=24% Similarity=0.513 Sum_probs=50.6
Q ss_pred CccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHH-Hhcc
Q 006420 91 SNQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYE-VLID 166 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYe-iLsD 166 (646)
.+-+.||.||||.. .|+.++++.+|..|++.+|||.... +.+...|..|.+||. ||+.
T Consensus 44 e~~~e~fril~v~e---~~~adevr~af~~lakq~hpdsgs~---------------~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEE---GADADEVREAFHDLAKQVHPDSGSE---------------EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccc---cCchhHHHHHHHHHHHHcCCCCCCc---------------cccHHHHHHHHHHHHHHHHH
Confidence 35578999999999 9999999999999999999999873 334679999999998 7774
No 87
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.97 E-value=0.00066 Score=69.90 Aligned_cols=51 Identities=12% Similarity=0.389 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCC-CCCHHHHHHHH-HHHHHHHh
Q 006420 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVP-GKTVIQCKKKF-ASLKENFR 640 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vp-grt~~~c~~Ry-k~l~~~vk 640 (646)
..|||+|||..|..-++.|+.+ .|..|+...| ||+-++|+-|| .+|.=+|+
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~---~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKH---NGTALPKLAGLRRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCC---CcchhhhhcCCCccchHHHHHhhcccCCCcc
Confidence 3689999999999999999965 8999999999 99999999998 56665555
No 88
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.84 E-value=0.0012 Score=71.75 Aligned_cols=43 Identities=28% Similarity=0.570 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA 633 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk 633 (646)
..||.+|.-+|..|+.+|+-| .|.-||..|+.||+.+|+.||-
T Consensus 73 ~~WtadEEilLLea~~t~G~G---NW~dIA~hIGtKtkeeck~hy~ 115 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFG---NWQDIADHIGTKTKEECKEHYL 115 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCC---cHHHHHHHHcccchHHHHHHHH
Confidence 479999999999999999987 7999999999999999999993
No 89
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.81 E-value=0.0011 Score=72.56 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHH
Q 006420 459 EKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKT 507 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~ 507 (646)
.++||..|+.+|..+|+.| | +.|++||.+|| .+|++|||-++=.
T Consensus 279 dk~WS~qE~~LLLEGIe~y--g--DdW~kVA~HVg-tKt~EqCIl~FL~ 322 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMY--G--DDWDKVARHVG-TKTKEQCILHFLQ 322 (531)
T ss_pred cccccHHHHHHHHHHHHHh--h--hhHHHHHHHhC-CCCHHHHHHHHHc
Confidence 4689999999999999999 4 35999999999 5999999999854
No 90
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0021 Score=57.37 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=44.0
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcch
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDP 167 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp 167 (646)
..--.||||++ .++.+.||.|||++-+..|||+....- .-..|++|+++|...
T Consensus 56 ~EA~lIL~v~~---s~~k~KikeaHrriM~~NHPD~GGSPY------------------lAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTP---SLDKDKIKEAHRRIMLANHPDRGGSPY------------------LASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCc---cccHHHHHHHHHHHHHcCCCcCCCCHH------------------HHHHHHHHHHHHhcc
Confidence 34567999998 999999999999999999999988532 224689999999754
No 91
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.61 E-value=0.0025 Score=71.80 Aligned_cols=46 Identities=28% Similarity=0.557 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
....||..|.-+|..||.+|+ +.|.+||..|.+||..||+-||-.|
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~----ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYG----DDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhc----ccHHHHHhccCCCCHHHHHHHHHhc
Confidence 446899999999999999995 7799999999999999999999765
No 92
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.57 E-value=0.0072 Score=48.58 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCcch---hHHHhHhcCCC-CHHHHHHHHHHH
Q 006420 459 EKPWSKEEIELLRKGMQKYPKGTSRRW---EVISEYIGTGR-SVEEILKATKTV 508 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~gt~~RW---~~IA~~~~~~R-t~ke~~~~~k~~ 508 (646)
.-.||+||..+|..||+.|+.| .| ..|++.|+..+ |..+|..++..+
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g---~~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGP---DWATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3579999999999999999554 49 99999997656 999999887654
No 93
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.43 E-value=0.0069 Score=48.68 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhH---HHHHhhC-CCC-CHHHHHHHHHH
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRW---ERVATAV-PGK-TVIQCKKKFAS 634 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW---~~IA~~V-pgr-t~~~c~~Ryk~ 634 (646)
-.||++|+..|..||..||.+ .| ..|+.++ +.+ |..||+.|++.
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g---~~a~pk~I~~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGP---DWATPKRILELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---cccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence 469999999999999999864 49 9998754 344 99999999864
No 94
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.24 E-value=0.018 Score=65.67 Aligned_cols=113 Identities=25% Similarity=0.395 Sum_probs=79.1
Q ss_pred cCCCCCHHHHHHHHHHHH------hC-------------CCC---CCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCc
Q 006420 458 KEKPWSKEEIELLRKGMQ------KY-------------PKG---TSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDG 515 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~------~~-------------p~g---t~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~ 515 (646)
..+.||.+|-+.|.++|+ .. |.+ .+-.|..|++.+|| |+--+|+.+|..++. .+
T Consensus 435 ~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~T-R~~~qCr~Kw~kl~~-~~-- 510 (607)
T KOG0051|consen 435 NRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGT-RSRIQCRYKWYKLTT-SP-- 510 (607)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcC-CCcchHHHHHHHHHh-hH--
Confidence 567899999999999996 11 333 33479999998886 999999999987641 10
Q ss_pred hhhhHHHHhhcCCcCccCCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCC-CCCCCCCCCHHH
Q 006420 516 AKAFDSFLEKRKPAQSIASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVS-SSSDQDAWSAVQ 594 (646)
Q Consensus 516 ~ka~~~f~~~~k~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~WT~eE 594 (646)
+|. +.. .......|..|+
T Consensus 511 --s~n-----------------------------------------------------------~~~~~~~~~~v~l~Er 529 (607)
T KOG0051|consen 511 --SFN-----------------------------------------------------------KRQESKGSDMVWLLER 529 (607)
T ss_pred --Hhh-----------------------------------------------------------cccccccchhHHHHHH
Confidence 000 000 000123577776
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHhhCCCCC-HHHHHHHHHHHHHHHh
Q 006420 595 ERALVQALKTFPKETSQRWERVATAVPGKT-VIQCKKKFASLKENFR 640 (646)
Q Consensus 595 ~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt-~~~c~~Ryk~l~~~vk 640 (646)
...|... ...+-.|+.|+...||.+ ..+|+.+|-.|+..|.
T Consensus 530 L~dl~~~-----e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~I~ 571 (607)
T KOG0051|consen 530 LSDLDLT-----EESPIDWKSLAEYAPGESTGEELRLQFERLKKKIP 571 (607)
T ss_pred HHhcccc-----cCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhccC
Confidence 5554433 123568999999999998 9999999999988765
No 95
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.16 E-value=0.0078 Score=65.73 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=44.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcC
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQK 512 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk 512 (646)
....||.+|-=+|.+|+.+|.-| +|.-||.+|| .||..+|..+|-.+.+..
T Consensus 71 ~~~~WtadEEilLLea~~t~G~G---NW~dIA~hIG-tKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFG---NWQDIADHIG-TKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCC---cHHHHHHHHc-ccchHHHHHHHHHHHhcC
Confidence 45679999999999999999666 6999999999 499999999998875544
No 96
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.0084 Score=57.18 Aligned_cols=74 Identities=20% Similarity=0.462 Sum_probs=56.2
Q ss_pred ccccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhh
Q 006420 92 NQQDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 92 k~~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~ 171 (646)
...+||.++|... .+...++-+.--|--...++|||+....... ..+.+.+.-..|++||.+|.||-.|.
T Consensus 6 ~~~~ff~~Fg~e~-~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~---------~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 6 SPSRFFDIFGMEL-SFKIDPDKLKEKYTDISKKLHPDRPGLSFAG---------DTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred hHHHHHHHhcccc-CCCCCcchhhHHHHHHHHhhCcccccccccc---------cchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3468999998864 3455666666679999999999996642211 12356778889999999999999999
Q ss_pred hhcc
Q 006420 172 IYDS 175 (646)
Q Consensus 172 ~YDs 175 (646)
.|=.
T Consensus 76 ~Yil 79 (168)
T KOG3192|consen 76 RYLL 79 (168)
T ss_pred HHHH
Confidence 9955
No 97
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=95.35 E-value=0.025 Score=65.05 Aligned_cols=50 Identities=28% Similarity=0.486 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF 639 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~v 639 (646)
+.+.||+.|.++|..||-+|-+ .+..|+.+|+|||++||..=|..-+.++
T Consensus 618 gSd~WTp~E~~lF~kA~y~~~K----DF~~v~km~~~KtVaqCVeyYYtWKK~~ 667 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTYSK----DFIFVQKMVKSKTVAQCVEYYYTWKKIM 667 (907)
T ss_pred CcccccHHHHHHHHHHHHHhcc----cHHHHHHHhccccHHHHHHHHHHHHHhc
Confidence 3467999999999999999965 4999999999999999998776555444
No 98
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.24 E-value=0.018 Score=64.77 Aligned_cols=51 Identities=33% Similarity=0.418 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhc
Q 006420 108 LATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLI 165 (646)
Q Consensus 108 ~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLs 165 (646)
..|..+||++|||.+|..||||.+..+.. ...+-.+.+.|-.+++|+....
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas-------~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGAS-------LEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCccc-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999999999998864321 1224567888888888887543
No 99
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.16 E-value=0.03 Score=48.22 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHh------CC--CCCC--cchhHHHhHh---cCCCCHHHHHHHHHHHh
Q 006420 460 KPWSKEEIELLRKGMQK------YP--KGTS--RRWEVISEYI---GTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~------~p--~gt~--~RW~~IA~~~---~~~Rt~ke~~~~~k~~l 509 (646)
..||.+|..+|+.++.. |. .... .-|..||..| |-.||+.||..+|+++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 36999999999998866 32 1222 2699999998 66799999999999963
No 100
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.15 E-value=0.025 Score=63.98 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=40.6
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
....||..|+-+|..+|++| | +.|.+||..|| +||..||+.++-.+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y--~--ddW~kVa~hVg-~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMY--G--DDWNKVADHVG-TKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHh--c--ccHHHHHhccC-CCCHHHHHHHHHhc
Confidence 46789999999999999999 4 35999999999 59999999988553
No 101
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.29 Score=57.07 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=7.5
Q ss_pred HHHHHHHHhCC
Q 006420 596 RALVQALKTFP 606 (646)
Q Consensus 596 ~~Le~al~~~p 606 (646)
-...++++.||
T Consensus 811 ve~lq~iA~y~ 821 (1118)
T KOG1029|consen 811 VEILQAIALYP 821 (1118)
T ss_pred hhhhhHHhhcc
Confidence 45567777777
No 102
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.022 Score=56.01 Aligned_cols=61 Identities=34% Similarity=0.520 Sum_probs=50.8
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVL 164 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiL 164 (646)
.+.|.+||+.. .+....|+++|+++...+|||+..+.+++.. --..+.+.++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~---~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e-------~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEI---KADQDAIKKAYRKLLSEQHPDKAAAKGLKLE-------FIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCch---hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHH-------HHHHHHHHHHHHHHHHHhc
Confidence 78999999999 9999999999999999999999887654421 1345688899999999753
No 103
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.06 E-value=0.037 Score=47.67 Aligned_cols=55 Identities=24% Similarity=0.589 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHh------CC--CC-CC-hhHHHHHhhC----CCCCHHHHHHHHHHHHHHHhhhh
Q 006420 589 AWSAVQERALVQALKT------FP--KE-TS-QRWERVATAV----PGKTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 589 ~WT~eE~~~Le~al~~------~p--~~-~~-~rW~~IA~~V----pgrt~~~c~~Ryk~l~~~vk~kK 643 (646)
.||.+|..+|..++.. |. .. .. .-|..||..+ ..||..||..+|+.|....+.-+
T Consensus 3 ~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k 71 (90)
T PF13837_consen 3 NWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK 71 (90)
T ss_dssp SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999888 21 12 22 3799999765 26999999999999999988654
No 104
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=0.03 Score=62.21 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
....|+..|+..|-.|+.+|++ +-|.+|+..++-+|+.||..||.+..
T Consensus 6 kggvwrntEdeilkaav~kyg~---nqws~i~sll~~kt~rqC~~rw~e~l 53 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGK---NQWSRIASLLNRKTARQCKARWEEWL 53 (617)
T ss_pred ecceecccHHHHHHHHHHHcch---HHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 3468999999999999999985 58999999999999999999996543
No 105
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.53 E-value=0.041 Score=57.87 Aligned_cols=45 Identities=22% Similarity=0.483 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA 633 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk 633 (646)
-...|+.+|.-+|..++.+.+-| .|+-||..|+.|++.+|+.||-
T Consensus 62 ~~e~WgadEEllli~~~~TlGlG---NW~dIadyiGsr~kee~k~Hyl 106 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLG---NWEDIADYIGSRAKEEIKSHYL 106 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCC---cHHHHHHHHhhhhhHHHHHHHH
Confidence 44579999999999999999977 7999999999999999999983
No 106
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=94.50 E-value=0.72 Score=53.12 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 006420 591 SAVQERALVQALKTFPKE 608 (646)
Q Consensus 591 T~eE~~~Le~al~~~p~~ 608 (646)
|.-..+.++..-++||.-
T Consensus 716 S~~~~~~~~t~~~k~~~~ 733 (811)
T KOG4364|consen 716 SQGINRVVETLQQKFPDV 733 (811)
T ss_pred ccHHHHHHHhhhhhcCCC
Confidence 445667777777777753
No 107
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=93.20 E-value=1.2 Score=54.77 Aligned_cols=9 Identities=0% Similarity=0.135 Sum_probs=3.6
Q ss_pred CHHHHHHHH
Q 006420 463 SKEEIELLR 471 (646)
Q Consensus 463 t~eE~~~L~ 471 (646)
...++.-|.
T Consensus 695 ~~~~~~~~~ 703 (1021)
T PTZ00266 695 DRNDMHGYM 703 (1021)
T ss_pred chhhhhHHh
Confidence 334444333
No 108
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.055 Score=53.13 Aligned_cols=72 Identities=29% Similarity=0.455 Sum_probs=54.1
Q ss_pred cccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchhhhhhhc
Q 006420 95 DHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPVKRRIYD 174 (646)
Q Consensus 95 d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~kR~~YD 174 (646)
||+..+|+.. .|....+.+...|+.+...+|||.....+-. .....-..+..++.||.+|.||.+|..|=
T Consensus 2 ~~~~~~~~~~-~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~---------~~~~~l~~~~~~~~a~~tLk~~l~ra~~~ 71 (174)
T COG1076 2 DGFVLFGLPR-AFQIDLDALKLQYRELQRAYHPDRFGKASEA---------EQRKALQQSAEVNPAYQTLKDPLLRAEYL 71 (174)
T ss_pred CcccccccHH-HHHHHHhHhhhhHHHHHHhhCcccccccchH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4566667765 2344556788999999999999998753211 13335678999999999999999999996
Q ss_pred cc
Q 006420 175 ST 176 (646)
Q Consensus 175 s~ 176 (646)
..
T Consensus 72 la 73 (174)
T COG1076 72 LA 73 (174)
T ss_pred HH
Confidence 54
No 109
>PTZ00121 MAEBL; Provisional
Probab=93.04 E-value=2.7 Score=52.46 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=10.3
Q ss_pred hhhHHhcccccccCCCc
Q 006420 228 FYNFWYSFKSWREFPHA 244 (646)
Q Consensus 228 FY~fw~~F~SwR~f~~~ 244 (646)
|-+.=.++.|...|+|.
T Consensus 1066 ~~~~~~~~~s~~~~~~~ 1082 (2084)
T PTZ00121 1066 VGQDEGLKPSYKDFDFD 1082 (2084)
T ss_pred cCcccccccccccccch
Confidence 34444566677777775
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.02 E-value=0.56 Score=57.86 Aligned_cols=148 Identities=12% Similarity=0.243 Sum_probs=87.9
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcC-CcCcc----
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRK-PAQSI---- 532 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k-~~~~i---- 532 (646)
+-..||.-|-..+++|+.+| | -+.-+.||..|+ |+|..+|..-++-. .+.-.....|+..+..-- +...|
T Consensus 823 gf~~w~~~~f~~f~~~~~~~--g-r~~~~~i~~~~~-~k~~~ev~~y~~~f-~~~~~~~~~~~~~~~~ie~~e~~~~~~~ 897 (1033)
T PLN03142 823 GFSTWSRRDFNAFIRACEKY--G-RNDIKSIASEME-GKTEEEVERYAKVF-WERYKELNDYDRIIKNIERGEARISRKD 897 (1033)
T ss_pred CcCcccHHHHHHHHHHHHHh--C-HhHHHHHHHHhc-CCCHHHHHHHHHHH-HHhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999 4 346999999997 69999997433321 111111112222222100 00000
Q ss_pred --CCCCcchhhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC
Q 006420 533 --ASPLTTREEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETS 610 (646)
Q Consensus 533 --~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~ 610 (646)
...+....+....+-. .. ..+. +......+|.+||..|.-++-+||-+
T Consensus 898 ~~~~~~~~k~~~~~~p~~--------------~l------------~~~~--~~~~~~~~~~~~d~~~~~~~~~~g~~-- 947 (1033)
T PLN03142 898 EIMKAIGKKLDRYKNPWL--------------EL------------KIQY--GQNKGKLYNEECDRFMLCMVHKLGYG-- 947 (1033)
T ss_pred HHHHHHHHHHHHccCcHH--------------Hc------------eeec--CCCCCCcCCHHHHHHHHHHHHHhccc--
Confidence 0000000000000000 00 0000 01233579999999999999999854
Q ss_pred hhHHHHHhhC------------CCCCHHHHHHHHHHHHHHHhh
Q 006420 611 QRWERVATAV------------PGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 611 ~rW~~IA~~V------------pgrt~~~c~~Ryk~l~~~vk~ 641 (646)
+|+.|-.+| -.||+.++.+|...|..+|..
T Consensus 948 -~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~~ 989 (1033)
T PLN03142 948 -NWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIEK 989 (1033)
T ss_pred -hHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHHH
Confidence 599996554 289999999999999998864
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.90 E-value=1.7 Score=51.04 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHhhhhc
Q 006420 108 LATEDQIRKSYRETALKY 125 (646)
Q Consensus 108 ~At~~eIKkAYrklalk~ 125 (646)
.|-+.--|.-|+++--.+
T Consensus 187 WAVp~~~klKY~QlFNa~ 204 (1118)
T KOG1029|consen 187 WAVPQHNKLKYRQLFNAL 204 (1118)
T ss_pred ccccchhhhHHHHHhhhc
Confidence 344444455577765444
No 112
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.07 E-value=7.1 Score=40.89 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006420 316 KKLQEEEAARAAEEERRRKVEEE 338 (646)
Q Consensus 316 ~r~~~ee~~~~~eeer~~ke~ee 338 (646)
+++.++..+++..+++.+++.|+
T Consensus 344 kkr~eeaeerqraeekeq~eaee 366 (445)
T KOG2891|consen 344 KKREEEAEERQRAEEKEQKEAEE 366 (445)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333333344444444444444
No 113
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=91.58 E-value=0.39 Score=40.42 Aligned_cols=55 Identities=24% Similarity=0.398 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhCCC---C----------CChhHHHHHhhC---C--CCCHHHHHHHHHHHHHHHhhhh
Q 006420 589 AWSAVQERALVQALKTFPK---E----------TSQRWERVATAV---P--GKTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 589 ~WT~eE~~~Le~al~~~p~---~----------~~~rW~~IA~~V---p--grt~~~c~~Ryk~l~~~vk~kK 643 (646)
.||.+|...|+..+..||. + -..-|+.|+..| + .||..+|+..|.-|+..+|.+-
T Consensus 4 ~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~~ 76 (78)
T PF13873_consen 4 NFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKKL 76 (78)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999964 1 146799999654 2 5999999999999999998763
No 114
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=91.42 E-value=0.21 Score=52.63 Aligned_cols=47 Identities=34% Similarity=0.572 Sum_probs=41.0
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
....|+.+|--+|++++.+..-| .|+-||.||| .|+..+|..+|-.+
T Consensus 62 ~~e~WgadEEllli~~~~TlGlG---NW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLG---NWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCC---cHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 45679999999999999999555 6999999999 79999999888554
No 115
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=11 Score=39.49 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006420 344 VALQQKKVKEKEKKLLRKE 362 (646)
Q Consensus 344 ~~~~~KK~ke~~Kk~lkKe 362 (646)
..+..+++++..|++++-.
T Consensus 289 aKE~~kka~k~~Kk~ikna 307 (379)
T COG5269 289 AKEVMKKALKMEKKAIKNA 307 (379)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666654
No 116
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.08 E-value=0.96 Score=53.08 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHHH
Q 006420 623 KTVIQCKKKFASLKENF 639 (646)
Q Consensus 623 rt~~~c~~Ryk~l~~~v 639 (646)
.+.++-..||..++-.|
T Consensus 626 ~v~~EF~~R~~~ii~ef 642 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEF 642 (1064)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666555443
No 117
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=91.04 E-value=5.3 Score=46.34 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 006420 258 KRWMERQNAKLTEKARKEEYARIR 281 (646)
Q Consensus 258 rR~~Ek~N~k~r~k~kke~~~rir 281 (646)
++.+.|+-++.+..+.|+...|-|
T Consensus 245 ~~l~~KQ~rk~meEreK~R~erEr 268 (811)
T KOG4364|consen 245 EKLLLKQLRKNMEEREKERKERER 268 (811)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHH
Confidence 344555555555555555444444
No 118
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=90.75 E-value=0.42 Score=40.25 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhCCC---C--C--------CcchhHHHhHh----cCCCCHHHHHHHHHHHh
Q 006420 460 KPWSKEEIELLRKGMQKYPK---G--T--------SRRWEVISEYI----GTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~---g--t--------~~RW~~IA~~~----~~~Rt~ke~~~~~k~~l 509 (646)
..||.+|..+|+..|..||. | + ..-|+.|+..| |+.||+.+|..+|.++.
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 56999999999999998742 1 1 13799999998 33799999999999863
No 119
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=88.70 E-value=1.1 Score=41.52 Aligned_cols=55 Identities=15% Similarity=0.358 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhC------------CCCCHHHHHHHHHHHHHHHhh
Q 006420 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAV------------PGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~V------------pgrt~~~c~~Ryk~l~~~vk~ 641 (646)
...||.+||..|...+..||-+.++.|++|-..| -.||+.++.+|-..|...|..
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K 115 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK 115 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999998889999997764 379999999999999988753
No 120
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=88.55 E-value=3.1 Score=46.56 Aligned_cols=10 Identities=50% Similarity=1.102 Sum_probs=4.7
Q ss_pred ccCCCccccc
Q 006420 239 REFPHADEFD 248 (646)
Q Consensus 239 R~f~~~de~~ 248 (646)
+.+.+.++..
T Consensus 275 ~~~P~~~~~~ 284 (429)
T PRK00247 275 RKYPLTDEFK 284 (429)
T ss_pred HhcCCCcchH
Confidence 3455555443
No 121
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=88.43 E-value=3.8 Score=41.22 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchhHHHhHhc--CCCCHHHHHHHHHHHhhcCCCchhhhHHHHhhcCCcCccCCCCcch
Q 006420 462 WSKEEIELLRKGMQKYPKGTSRRWEVISEYIG--TGRSVEEILKATKTVLLQKPDGAKAFDSFLEKRKPAQSIASPLTTR 539 (646)
Q Consensus 462 Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~--~~Rt~ke~~~~~k~~l~qk~~~~ka~~~f~~~~k~~~~i~~~~~~r 539 (646)
|++.++=+|+.||.. |. --+.|+..|. ...|.++|..||..+|.....+.-|- .+
T Consensus 2 W~~~DDl~Li~av~~----~~-~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~------------------~~ 58 (199)
T PF13325_consen 2 WKPEDDLLLINAVEQ----TN-DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAV------------------AA 58 (199)
T ss_pred CCchhhHHHHHHHHH----hc-CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHH------------------HH
Confidence 999999999999973 32 2566666552 24699999999999874221111000 00
Q ss_pred hhhccCCCccccccCCCCCCCCccccCCCCCCCCcccccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHh-
Q 006420 540 EEVVGASTPQVVQNSGARTDSSEESSSSTSQKPADVTAANGVSSSSDQDAWSAVQERALVQALKTFPKETSQRWERVAT- 618 (646)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~- 618 (646)
+... .+. .....-...+||.+|..+|......... +.+.+.+|=.
T Consensus 59 m~~l--~p~-------------------------------~~~~iq~kalfS~~EE~lL~~v~s~~~p-~le~Fq~LL~~ 104 (199)
T PF13325_consen 59 MRNL--HPE-------------------------------LIAAIQSKALFSKEEEQLLGTVASSSQP-SLETFQELLDK 104 (199)
T ss_pred HHhC--Ccc-------------------------------hhhcccccCCCCHHHHHHHHhhhhccCC-cHHHHHHHHHh
Confidence 0000 000 0011123358999999999997665533 2478888842
Q ss_pred ----hCCCCCHHHHHHHHHHHHH
Q 006420 619 ----AVPGKTVIQCKKKFASLKE 637 (646)
Q Consensus 619 ----~Vpgrt~~~c~~Ryk~l~~ 637 (646)
--++||.++-..+|..|+.
T Consensus 105 n~~vFh~sRTak~L~~HW~lmkq 127 (199)
T PF13325_consen 105 NRSVFHPSRTAKSLQDHWRLMKQ 127 (199)
T ss_pred ChhhhccccCHHHHHHHHHHHHH
Confidence 2379999999999987653
No 122
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=0.62 Score=50.28 Aligned_cols=54 Identities=19% Similarity=0.403 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhCCCC----CChhHHHHHhhCCC-CCHHHHHHHHHHHHHHHhhh
Q 006420 589 AWSAVQERALVQALKTFPKE----TSQRWERVATAVPG-KTVIQCKKKFASLKENFRSK 642 (646)
Q Consensus 589 ~WT~eE~~~Le~al~~~p~~----~~~rW~~IA~~Vpg-rt~~~c~~Ryk~l~~~vk~k 642 (646)
-|+.+..+.|+.||..|... ++++|++++.+||| .+..+.+.+|..++.+|...
T Consensus 33 ~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~ 91 (335)
T KOG0724|consen 33 LWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIR 91 (335)
T ss_pred hhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhh
Confidence 59999999999999999875 78999999999999 99999999999999998754
No 123
>PTZ00121 MAEBL; Provisional
Probab=87.57 E-value=14 Score=46.56 Aligned_cols=9 Identities=0% Similarity=-0.042 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 006420 153 HFKAVQEAY 161 (646)
Q Consensus 153 ~F~~I~~AY 161 (646)
...|+.--|
T Consensus 946 f~eC~e~lF 954 (2084)
T PTZ00121 946 FGGCLEYLF 954 (2084)
T ss_pred HHHHHHHHH
Confidence 344444444
No 124
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=85.76 E-value=1 Score=48.60 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHH-HhhCCCCCHHHHHHHHHH
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRWERV-ATAVPGKTVIQCKKKFAS 634 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~I-A~~Vpgrt~~~c~~Ryk~ 634 (646)
..||.+|-+.||.+|+.|+++ +..| +..|+.||.-+|+.=|..
T Consensus 278 ~~wsEeEcr~FEegl~~yGKD----F~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKD----FHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhccc----HHHHHhcccccchHHHHHHHHHH
Confidence 479999999999999999875 8889 579999999999976643
No 125
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=85.69 E-value=12 Score=44.20 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=5.7
Q ss_pred ccccccccccccc
Q 006420 92 NQQDHYALLGLSH 104 (646)
Q Consensus 92 k~~d~Y~vLGl~~ 104 (646)
.+.|||. |++++
T Consensus 551 ~~k~HfR-L~~PR 562 (1259)
T KOG0163|consen 551 SNKNHFR-LDLPR 562 (1259)
T ss_pred hhhccee-ecCCc
Confidence 3455553 34444
No 126
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=84.99 E-value=38 Score=36.40 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 006420 277 YARIRTL 283 (646)
Q Consensus 277 ~~rir~L 283 (646)
..||++|
T Consensus 100 qErlkQl 106 (387)
T COG3064 100 QERLKQL 106 (387)
T ss_pred HHHHHHH
Confidence 3444444
No 127
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=84.81 E-value=42 Score=37.34 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q 006420 273 RKEEYARIRTLV 284 (646)
Q Consensus 273 kke~~~rir~LV 284 (646)
+..+..||+.|-
T Consensus 96 ~~~eq~rlk~le 107 (387)
T PRK09510 96 QAAEQERLKQLE 107 (387)
T ss_pred HHHHHHHHHHHH
Confidence 334456676663
No 128
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=84.40 E-value=2.4 Score=36.78 Aligned_cols=52 Identities=29% Similarity=0.549 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhC------CCC---CChhHHHHHhhC---CC--CCHHHHHHHHHHHHHHHhh
Q 006420 590 WSAVQERALVQALKTF------PKE---TSQRWERVATAV---PG--KTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 590 WT~eE~~~Le~al~~~------p~~---~~~rW~~IA~~V---pg--rt~~~c~~Ryk~l~~~vk~ 641 (646)
||+++...|...|... |.+ .+..|..|+..+ +| .|..||++||+.|+...+.
T Consensus 2 Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~ 67 (96)
T PF12776_consen 2 WTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRI 67 (96)
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999888654 211 257899998654 44 5789999999999988763
No 129
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=83.78 E-value=21 Score=42.38 Aligned_cols=6 Identities=17% Similarity=0.651 Sum_probs=2.7
Q ss_pred CCCCHH
Q 006420 460 KPWSKE 465 (646)
Q Consensus 460 ~~Wt~e 465 (646)
+.|.-.
T Consensus 1068 ~~wkya 1073 (1259)
T KOG0163|consen 1068 SKWKYA 1073 (1259)
T ss_pred ccccHH
Confidence 345543
No 130
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=83.68 E-value=15 Score=41.92 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 006420 398 LRNLCDK 404 (646)
Q Consensus 398 L~~l~~~ 404 (646)
|..+|..
T Consensus 331 lk~~~~~ 337 (591)
T KOG2412|consen 331 LKNYNQS 337 (591)
T ss_pred HHHHHHH
Confidence 4444443
No 131
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=82.71 E-value=56 Score=36.32 Aligned_cols=7 Identities=43% Similarity=0.344 Sum_probs=3.0
Q ss_pred HHhhhhH
Q 006420 225 VDNFYNF 231 (646)
Q Consensus 225 v~~FY~f 231 (646)
|..-|+.
T Consensus 60 v~~q~~~ 66 (387)
T PRK09510 60 VVEQYNR 66 (387)
T ss_pred HHHHHHH
Confidence 4444444
No 132
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=80.43 E-value=3.1 Score=38.47 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcC-----------CCCHHHHHHHHHHHh
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGT-----------GRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~-----------~Rt~ke~~~~~k~~l 509 (646)
+.+.||.+||.-|.-.|.+|+-++++.|+.|-..|-. +||+.++..|...++
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 5678999999999999999988888999999997721 699999999987764
No 133
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=80.21 E-value=3.1 Score=45.18 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFA 633 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk 633 (646)
...+||..|...|-.||..+|. .+..||...|.|.-+|++..|.
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGt----dF~LIs~lfP~R~RkqIKaKfi 407 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGT----DFSLISSLFPNRERKQIKAKFI 407 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcc----hHHHHHHhcCchhHHHHHHHHH
Confidence 4468999999999999999975 5999999999999999999986
No 134
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=79.44 E-value=74 Score=34.27 Aligned_cols=7 Identities=29% Similarity=0.173 Sum_probs=2.8
Q ss_pred HHhhhhH
Q 006420 225 VDNFYNF 231 (646)
Q Consensus 225 v~~FY~f 231 (646)
|..-|+-
T Consensus 60 v~qq~~r 66 (387)
T COG3064 60 VVQQYGR 66 (387)
T ss_pred HHHHHHH
Confidence 3344433
No 135
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=78.87 E-value=2.3 Score=48.53 Aligned_cols=47 Identities=32% Similarity=0.544 Sum_probs=41.5
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
+.++||.+|+..|..+=..+ |+ +|..||.+|+ +||..+|..+|..++
T Consensus 71 k~~~~~~eed~~li~l~~~~--~~--~wstia~~~d-~rt~~~~~ery~~~~ 117 (512)
T COG5147 71 KKKNWSEEEDEQLIDLDKEL--GT--QWSTIADYKD-RRTAQQCVERYVNTL 117 (512)
T ss_pred ccccccHHHHHHHHHHHHhc--Cc--hhhhhccccC-ccchHHHHHHHHHHh
Confidence 56789999999999998888 33 4999999998 699999999999764
No 136
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=76.21 E-value=15 Score=39.75 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhh
Q 006420 277 YARIRTLVDNAY 288 (646)
Q Consensus 277 ~~rir~LV~~a~ 288 (646)
+.-+-.|||.+.
T Consensus 237 ~~~v~~l~D~~~ 248 (321)
T PF07946_consen 237 LKLVFYLIDKLA 248 (321)
T ss_pred HHHHHHHHHHhh
Confidence 444555666666
No 137
>smart00595 MADF subfamily of SANT domain.
Probab=75.07 E-value=3.8 Score=35.06 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=26.3
Q ss_pred hhHHHHHhhCCCCCHHHHHHHHHHHHHHHhh
Q 006420 611 QRWERVATAVPGKTVIQCKKKFASLKENFRS 641 (646)
Q Consensus 611 ~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk~ 641 (646)
.-|..||..+.. |..+|+.+|+.|+..++.
T Consensus 28 ~aW~~Ia~~l~~-~~~~~~~kw~~LR~~y~~ 57 (89)
T smart00595 28 KAWEEIAEELGL-SVEECKKRWKNLRDRYRR 57 (89)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 569999999865 999999999999987764
No 138
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=72.32 E-value=37 Score=34.06 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=10.9
Q ss_pred HhhhcChhhHHHHHHHHH
Q 006420 286 NAYKRDPRILKRKEAEKA 303 (646)
Q Consensus 286 ~a~~~DpRik~~keeek~ 303 (646)
.+...||....+.+++..
T Consensus 69 ~~~~~dpd~v~~rqEa~e 86 (190)
T PF06936_consen 69 AAAKKDPDVVVRRQEAME 86 (190)
T ss_dssp HHHTTSHHHHHHHHHHHH
T ss_pred hhhhcChhHHHHHHHHHH
Confidence 346778777666555544
No 139
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.17 E-value=1.4e+02 Score=31.67 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=3.7
Q ss_pred CCchHHhh
Q 006420 189 PQDFYKVF 196 (646)
Q Consensus 189 ~~~Ff~~f 196 (646)
.+-||..|
T Consensus 219 ~dlffeay 226 (445)
T KOG2891|consen 219 GDLFFEAY 226 (445)
T ss_pred cchhHHHH
Confidence 33455544
No 140
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=71.98 E-value=1.1e+02 Score=37.16 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=45.9
Q ss_pred CccccccccccccccCCCCC-----------------HHHHHHHHHHhhhhcCCCchhhhhhh------hhH--HHHH-h
Q 006420 91 SNQQDHYALLGLSHLRYLAT-----------------EDQIRKSYRETALKYHPDKQAALLFA------EET--EAAK-Q 144 (646)
Q Consensus 91 ~k~~d~Y~vLGl~~~r~~At-----------------~~eIKkAYrklalk~HPDK~~~~~~~------e~~--e~~~-~ 144 (646)
.++.-.|-+|||+. ..| ..+||--|.=|--.+||++.....-+ +.+ .... .
T Consensus 352 ek~~rla~LL~L~~---~PTR~~ll~e~v~~gV~~~v~qe~kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~~QYI~s 428 (988)
T KOG2072|consen 352 EKNLRLANLLGLPA---PPTRKGLLKEAVREGVLSKVDQEVKDLYNILEVEFHPLKLCKKLQPLLDKLSESPDKSQYIPS 428 (988)
T ss_pred hHHHHHHHHhCCCC---CccHHHHHHHHHHhccHhhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCccccchh
Confidence 45566888888875 222 35788889999999999986532111 000 0001 1
Q ss_pred hchHHHHHHHHHHHHHHHHhcch
Q 006420 145 AKKDEIETHFKAVQEAYEVLIDP 167 (646)
Q Consensus 145 ~~~~~~~~~F~~I~~AYeiLsDp 167 (646)
..+-.+...|++|..-|+.++=.
T Consensus 429 Lq~v~~~RllqQvSqiY~sIs~~ 451 (988)
T KOG2072|consen 429 LQDVIILRLLQQVSQIYESISFE 451 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 12234577899999999887743
No 141
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=71.67 E-value=8.5 Score=42.91 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 006420 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENF 639 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~v 639 (646)
.+.||.++.-+|++|...||+ ++.+|-.++|-||......=|.....-+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK----~F~kIrq~LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK----DFHKIRQALPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc----cHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence 367999999999999999976 5999999999999999988776665443
No 142
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=70.08 E-value=7.4 Score=36.49 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=27.2
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhhhcCCCchhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETALKYHPDKQAA 132 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklalk~HPDK~~~ 132 (646)
..-..||||++ ..+.++|.+.|.+|-...+|++.+.
T Consensus 58 ~EA~~ILnv~~---~~~~eeI~k~y~~Lf~~Nd~~kGGS 93 (127)
T PF03656_consen 58 DEARQILNVKE---ELSREEIQKRYKHLFKANDPSKGGS 93 (127)
T ss_dssp HHHHHHHT--G-----SHHHHHHHHHHHHHHT-CCCTS-
T ss_pred HHHHHHcCCCC---ccCHHHHHHHHHHHHhccCCCcCCC
Confidence 35678999999 8999999999999999999998764
No 143
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=68.66 E-value=6.6 Score=38.11 Aligned_cols=50 Identities=24% Similarity=0.444 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCC---hhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETS---QRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~---~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
..+.||.++|.+|-..+-.|=...+ .-.+-++..+ |||...|-=||...|
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~V 55 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYV 55 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHH
Confidence 3568999999999999888855332 5567777665 799999988875443
No 144
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.16 E-value=34 Score=35.45 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 006420 323 AARAAEEERR 332 (646)
Q Consensus 323 ~~~~~eeer~ 332 (646)
++++..++|.
T Consensus 140 ~erKkdEeR~ 149 (299)
T KOG3054|consen 140 AERKKDEERL 149 (299)
T ss_pred HHHhhhHHHH
Confidence 3333333333
No 145
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=67.82 E-value=1.2e+02 Score=33.17 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q 006420 271 KARKEEYARIRTL 283 (646)
Q Consensus 271 k~kke~~~rir~L 283 (646)
+.+..+..||+.|
T Consensus 82 ~~~~~eq~r~~~l 94 (346)
T TIGR02794 82 KQRAAEQARQKEL 94 (346)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455677766
No 146
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=66.44 E-value=33 Score=38.53 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHH
Q 006420 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASL 635 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l 635 (646)
.-.||+.|-. +++.||-. ....+.||+.+.++|+.|+..+|-.=
T Consensus 470 ~~~wSp~e~s----~ircf~~y-~~~fe~ia~l~~tktp~Q~~~fy~~n 513 (534)
T KOG1194|consen 470 NYGWSPEEKS----AIRCFHWY-KDNFELIAELMATKTPEQIKKFYMDN 513 (534)
T ss_pred cCCCCCcccc----cccCchhh-ccchHHHHHHhcCCCHHHHHHHhcCc
Confidence 3479999988 66677643 35689999999999999999999643
No 147
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.70 E-value=5.7 Score=38.58 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCCC-cchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420 460 KPWSKEEIELLRKGMQKY--PKGTS-RRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~--p~gt~-~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..||.||+-+|...|-.| -+||- .-.+-|+..+ +||+--|-=||..++
T Consensus 5 DAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L--~RTsAACGFRWNs~V 55 (161)
T TIGR02894 5 DAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL--NRTAAACGFRWNAYV 55 (161)
T ss_pred cccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--cccHHHhcchHHHHH
Confidence 469999999999999887 55553 5688999999 599999999998874
No 148
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=63.90 E-value=33 Score=37.02 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=10.9
Q ss_pred cccccccCCCCCHHHHHHHHHHhhh
Q 006420 99 LLGLSHLRYLATEDQIRKSYRETAL 123 (646)
Q Consensus 99 vLGl~~~r~~At~~eIKkAYrklal 123 (646)
|+.|-+ ...-..+++-+.-|.+
T Consensus 128 V~Aiv~---K~~~~~~r~~~~dLs~ 149 (321)
T PF07946_consen 128 VFAIVN---KKEMKKLRKDNYDLSL 149 (321)
T ss_pred EEEEEc---HHHHHHHHHhCcchhh
Confidence 444444 3334455555555555
No 149
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.82 E-value=65 Score=36.47 Aligned_cols=67 Identities=4% Similarity=-0.091 Sum_probs=46.9
Q ss_pred HHhhhhHHhcccccccCCCccccchhhhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhcCh
Q 006420 225 VDNFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLTEKARKEEYARIRTLVDNAYKRDP 292 (646)
Q Consensus 225 v~~FY~fw~~F~SwR~f~~~de~~~e~~e~R~~rR~~Ek~N~k~r~k~kke~~~rir~LV~~a~~~Dp 292 (646)
+..||..|.+|.+--.|.|. ++..--...+..++.+...+-..+....+.-...|++++..+++.+-
T Consensus 133 d~~~~ap~fg~~~t~ye~~~-~fY~~W~afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak 199 (508)
T KOG0717|consen 133 DSKLLYPLFGYSTTDYEQVV-PFYQFWLAFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYAR 199 (508)
T ss_pred CCccccccccCCCCcHHHHH-HHHHHHHhhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677777777776666666 66666666777888888888888877777766666666666555553
No 150
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=62.52 E-value=11 Score=44.33 Aligned_cols=44 Identities=16% Similarity=0.383 Sum_probs=38.0
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHH
Q 006420 457 KKEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKAT 505 (646)
Q Consensus 457 ~~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~ 505 (646)
.++..||..|..+|-+|+-.|-. .+..|+..|. ++|++||.+-|
T Consensus 617 ~gSd~WTp~E~~lF~kA~y~~~K----DF~~v~km~~-~KtVaqCVeyY 660 (907)
T KOG4167|consen 617 AGSDKWTPLERKLFNKALYTYSK----DFIFVQKMVK-SKTVAQCVEYY 660 (907)
T ss_pred cCcccccHHHHHHHHHHHHHhcc----cHHHHHHHhc-cccHHHHHHHH
Confidence 45678999999999999988833 4999999998 69999999855
No 151
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=61.29 E-value=20 Score=38.85 Aligned_cols=58 Identities=24% Similarity=0.468 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCC----C--CChhHHHHHhhC----CCCCHHHHHHHHHHHHHHHhhhhc
Q 006420 587 QDAWSAVQERALVQALKTFPK----E--TSQRWERVATAV----PGKTVIQCKKKFASLKENFRSKKS 644 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~----~--~~~rW~~IA~~V----pgrt~~~c~~Ryk~l~~~vk~kK~ 644 (646)
...||.+|-.+|..+...... + -..-|+.||... .=||..||+.+|+.|..-+|.-|+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~ 121 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKA 121 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999988775532 1 246799999722 249999999999999999886553
No 152
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=60.99 E-value=47 Score=40.66 Aligned_cols=14 Identities=36% Similarity=0.408 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHH
Q 006420 149 EIETHFKAVQEAYE 162 (646)
Q Consensus 149 ~~~~~F~~I~~AYe 162 (646)
.+-+.|..|.+|..
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 45667777777765
No 153
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=60.86 E-value=11 Score=31.40 Aligned_cols=33 Identities=24% Similarity=0.643 Sum_probs=27.7
Q ss_pred hhHHHHHhhCCC-CCHHHHHHHHHHHHHHHhhhh
Q 006420 611 QRWERVATAVPG-KTVIQCKKKFASLKENFRSKK 643 (646)
Q Consensus 611 ~rW~~IA~~Vpg-rt~~~c~~Ryk~l~~~vk~kK 643 (646)
+-|..||..+.+ -+..+|+.||+.|+..++.-+
T Consensus 27 ~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~ 60 (85)
T PF10545_consen 27 EAWQEIARELGKEFSVDDCKKRWKNLRDRYRREL 60 (85)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 569999999863 688999999999999887543
No 154
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=59.40 E-value=1.3e+02 Score=34.64 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=15.6
Q ss_pred ccccccccCCCCCHHHH------HHHHHHhhhhcC
Q 006420 98 ALLGLSHLRYLATEDQI------RKSYRETALKYH 126 (646)
Q Consensus 98 ~vLGl~~~r~~At~~eI------KkAYrklalk~H 126 (646)
+||.|.+ +++.+.| -..|...+--|.
T Consensus 68 Di~~ig~---~a~vdhI~nlrrIiagyl~~aygY~ 99 (489)
T PF05262_consen 68 DIFIIGE---NARVDHINNLRRIIAGYLEAAYGYS 99 (489)
T ss_pred cEEEEcC---CCCccHHHHHHHHHHHHHHHhcCCC
Confidence 4566666 6666554 456666666664
No 155
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=58.52 E-value=1.7e+02 Score=33.69 Aligned_cols=6 Identities=50% Similarity=0.097 Sum_probs=2.2
Q ss_pred HHHHHH
Q 006420 43 FHAAAL 48 (646)
Q Consensus 43 f~~~~~ 48 (646)
|++.++
T Consensus 35 ~la~~~ 40 (489)
T PF05262_consen 35 GLAEAL 40 (489)
T ss_pred HHHHHH
Confidence 333333
No 156
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=56.10 E-value=2.6e+02 Score=29.17 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=28.0
Q ss_pred cCCCCCHHHHHHHHHHHHh--CCCCCCcchhHHHhHhc
Q 006420 458 KEKPWSKEEIELLRKGMQK--YPKGTSRRWEVISEYIG 493 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~--~p~gt~~RW~~IA~~~~ 493 (646)
..-|=++++...+..++.. |+.|++-++.+-+..+.
T Consensus 182 ta~~l~~~~~~~~~~~l~~~~~~~~~~~~f~~~p~li~ 219 (250)
T PRK14474 182 TSFELSQDLRAQILESLHQTHLIPGTDIHFVTSPELIC 219 (250)
T ss_pred eCCCCCHHHHHHHHHHHHHHhcCCCCceeeecCccccc
Confidence 4567888999999999976 67777777877777664
No 157
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=55.72 E-value=19 Score=39.36 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=40.6
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCCcchhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
+.-+||..|+..+-||+... || .+..|+..+++ |+-+||-.+|+.-
T Consensus 364 ~~~~Ws~~e~ekFYKALs~w--Gt--dF~LIs~lfP~-R~RkqIKaKfi~E 409 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIW--GT--DFSLISSLFPN-RERKQIKAKFIKE 409 (507)
T ss_pred CCCcccHHHHHHHHHHHHHh--cc--hHHHHHHhcCc-hhHHHHHHHHHHH
Confidence 56689999999999999999 77 39999999995 9999999888753
No 158
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=54.89 E-value=3.2e+02 Score=29.95 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 006420 595 ERALVQALK 603 (646)
Q Consensus 595 ~~~Le~al~ 603 (646)
+...+.||.
T Consensus 312 D~AAl~AV~ 320 (346)
T TIGR02794 312 CQAALAAVA 320 (346)
T ss_pred HHHHHHHHH
Confidence 344444443
No 159
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=54.49 E-value=18 Score=35.58 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCChhHHHHH--hhCCCCCHHHHHHHH
Q 006420 586 DQDAWSAVQERALVQALKTFPKETSQRWERVA--TAVPGKTVIQCKKKF 632 (646)
Q Consensus 586 ~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA--~~Vpgrt~~~c~~Ry 632 (646)
..+.||.+++.+|...+-.|....+..-..|. ...-+||...|--||
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRw 52 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRW 52 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHH
Confidence 34689999999999999999876555544442 233479999999999
No 160
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=54.14 E-value=18 Score=41.70 Aligned_cols=48 Identities=27% Similarity=0.479 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHH----------HhhCCCCCHHHHHHHHHHHHHH
Q 006420 587 QDAWSAVQERALVQALKTFPKETSQRWERV----------ATAVPGKTVIQCKKKFASLKEN 638 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~I----------A~~Vpgrt~~~c~~Ryk~l~~~ 638 (646)
.+.||..|...|-.||+.|+++ +++| -..|--||+.|+..+|..++-.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKd----Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~ 145 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKD----FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRR 145 (782)
T ss_pred ccccchhhHHHHHHHHHHhccc----HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHH
Confidence 4689999999999999999875 8888 4567789999999998766543
No 161
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=53.45 E-value=35 Score=25.58 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHH
Q 006420 595 ERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 595 ~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~ 636 (646)
|..|..+|+.-+.- -|..||..| |=|...|..|++.|.
T Consensus 5 D~~Il~~Lq~d~r~---s~~~la~~l-glS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 5 DRKILRLLQEDGRR---SYAELAEEL-GLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHH-TTS----HHHHHHHH-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc---cHHHHHHHH-CcCHHHHHHHHHHhC
Confidence 67888888888753 599999987 799999999998874
No 162
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=52.43 E-value=24 Score=38.32 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHH----hCCCCC--CcchhHHHhHh---cCCCCHHHHHHHHHHHh
Q 006420 459 EKPWSKEEIELLRKGMQ----KYPKGT--SRRWEVISEYI---GTGRSVEEILKATKTVL 509 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~----~~p~gt--~~RW~~IA~~~---~~~Rt~ke~~~~~k~~l 509 (646)
...|+.+|...|+.+-. .|.-|+ ..-|+.||.-+ |..||..+|..+|+++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 47899999999998854 333333 13599999954 66799999999999873
No 163
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=51.28 E-value=11 Score=41.26 Aligned_cols=45 Identities=29% Similarity=0.468 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCcchhHHHhH-----hcCCCCHHHHHHHHHHH
Q 006420 460 KPWSKEEIELLRKGMQKYPKGTSRRWEVISEY-----IGTGRSVEEILKATKTV 508 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~p~gt~~RW~~IA~~-----~~~~Rt~ke~~~~~k~~ 508 (646)
..||.+|..-|=..|..|. -||-+||.. .+++||+++.-.||-.+
T Consensus 131 n~WskeETD~LF~lck~fD----LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v 180 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFD----LRFFVIADRYDNQQYKKSRTVEDLKERYYSV 180 (445)
T ss_pred ccccHHHHHHHHHHHHhcC----eeEEEEeeccchhhccccccHHHHHHHHHHH
Confidence 4699999999999999992 489999987 67789999999998765
No 164
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=50.26 E-value=34 Score=28.31 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhC---C--CCCCcchhHHHhHhcCCCCHHHHHHHHHHHhh
Q 006420 460 KPWSKEEIELLRKGMQKY---P--KGTSRRWEVISEYIGTGRSVEEILKATKTVLL 510 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~---p--~gt~~RW~~IA~~~~~~Rt~ke~~~~~k~~l~ 510 (646)
.+.|.+|+..|.+.|..+ | .+++.-|..++...++.+|-.-.+.||...|.
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999655 2 23456799999888878899988899977653
No 165
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=50.05 E-value=41 Score=28.95 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHh------CC-CCC--CcchhHHHhHh----cCCCCHHHHHHHHHHH
Q 006420 461 PWSKEEIELLRKGMQK------YP-KGT--SRRWEVISEYI----GTGRSVEEILKATKTV 508 (646)
Q Consensus 461 ~Wt~eE~~~L~kav~~------~p-~gt--~~RW~~IA~~~----~~~Rt~ke~~~~~k~~ 508 (646)
.||++....|..+|.. +| .|+ +.-|..|+..| |...|.++|..+++.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 3999998888877632 23 222 24699999988 4467899999999875
No 166
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=48.63 E-value=1e+02 Score=33.35 Aligned_cols=8 Identities=25% Similarity=-0.134 Sum_probs=4.1
Q ss_pred hhHHHhHh
Q 006420 485 WEVISEYI 492 (646)
Q Consensus 485 W~~IA~~~ 492 (646)
|-.|+.++
T Consensus 300 k~~~~sk~ 307 (361)
T KOG3634|consen 300 KVQISSKY 307 (361)
T ss_pred eeehhhhh
Confidence 44555554
No 167
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=47.80 E-value=71 Score=34.41 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=41.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 006420 584 SSDQDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 584 ~~~~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~vk 640 (646)
......||.-|-+.|..+|+.---...-.-.-|+..||||+..|+.+=...|+.-|-
T Consensus 18 ~~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rva 74 (344)
T PF11035_consen 18 VTGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVA 74 (344)
T ss_pred CCCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHH
Confidence 344568999999999999997532122233458999999999999887777665553
No 168
>smart00595 MADF subfamily of SANT domain.
Probab=47.71 E-value=19 Score=30.71 Aligned_cols=23 Identities=48% Similarity=0.619 Sum_probs=20.9
Q ss_pred chhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 484 RWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 484 RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
-|..||..|| -|+.+|..+|+++
T Consensus 29 aW~~Ia~~l~--~~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELG--LSVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHC--cCHHHHHHHHHHH
Confidence 5999999997 4999999999986
No 169
>PLN03086 PRLI-interacting factor K; Provisional
Probab=47.53 E-value=1.2e+02 Score=35.61 Aligned_cols=8 Identities=0% Similarity=-0.218 Sum_probs=3.1
Q ss_pred CCCHHHHH
Q 006420 589 AWSAVQER 596 (646)
Q Consensus 589 ~WT~eE~~ 596 (646)
.|.-....
T Consensus 414 ~~~i~l~~ 421 (567)
T PLN03086 414 KHYIPSRS 421 (567)
T ss_pred CCccchhH
Confidence 34433333
No 170
>smart00426 TEA TEA domain.
Probab=45.98 E-value=50 Score=27.67 Aligned_cols=46 Identities=26% Similarity=0.495 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC-CC-----------cchhHHHhHh----cCCCCHHHHHHH
Q 006420 459 EKPWSKEEIELLRKGMQKYPKG-TS-----------RRWEVISEYI----GTGRSVEEILKA 504 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~~~p~g-t~-----------~RW~~IA~~~----~~~Rt~ke~~~~ 504 (646)
..-|+++=-..|..|+..||+- +. .|=+.|+.|| |.-||.|||-.+
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsSh 64 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSH 64 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcch
Confidence 4569977667899999999654 32 1446788887 445888888543
No 171
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=45.34 E-value=2.7e+02 Score=30.83 Aligned_cols=32 Identities=38% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006420 323 AARAAEEERRRKVEEEKRVAEVALQQKKVKEK 354 (646)
Q Consensus 323 ~~~~~eeer~~ke~ee~~~~e~~~~~KK~ke~ 354 (646)
....++.++..++.+.+.+.-..+++.+.++.
T Consensus 120 k~wka~qe~~qke~e~kea~lkklq~ekkkek 151 (510)
T PF04747_consen 120 KKWKAEQEKIQKEQEKKEAELKKLQAEKKKEK 151 (510)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34445555555555544433333333333333
No 172
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=44.98 E-value=28 Score=43.52 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHH
Q 006420 587 QDAWSAVQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKK 630 (646)
Q Consensus 587 ~~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~ 630 (646)
...||.-+=..|..|..+|+. +.-+.||..|.|||..++..
T Consensus 824 f~~w~~~~f~~f~~~~~~~gr---~~~~~i~~~~~~k~~~ev~~ 864 (1033)
T PLN03142 824 FSTWSRRDFNAFIRACEKYGR---NDIKSIASEMEGKTEEEVER 864 (1033)
T ss_pred cCcccHHHHHHHHHHHHHhCH---hHHHHHHHHhcCCCHHHHHH
Confidence 457999999999999999985 47999999999999999973
No 173
>PF00674 DUP: DUP family; InterPro: IPR001142 A number of uncharacterised integral membrane proteins from yeast contain an internal duplication due to duplicated genes. Duplicated copies of genes may be classified in two types of cluster organisation. The first type includes genes sharing a significant level of identity in the amino acid sequences of their predicted protein product. They are recovered on two different chromosomes, transcribed in the same orientation and the distance between them is conserved. The second type of cluster is based on one gene unit tandemly repeated. This duplication is itself repeated elsewhere in the genome. The basic gene unit is recovered many times in the genome and is a component of a multigene family of unknown function. These organisations in clusters of genes suggest a 'Lego organisation' of the yeast chromosomes []. The proteins belonging to this family are of unknown function.
Probab=43.87 E-value=48 Score=29.89 Aligned_cols=43 Identities=9% Similarity=0.340 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCCCcchhHHHhHhcC-------CC------CHHHHHHHHHHHh
Q 006420 467 IELLRKGMQKYPKGTSRRWEVISEYIGT-------GR------SVEEILKATKTVL 509 (646)
Q Consensus 467 ~~~L~kav~~~p~gt~~RW~~IA~~~~~-------~R------t~ke~~~~~k~~l 509 (646)
.++|...+..-|++....|+.||..|+. .+ .+++|..-++.+.
T Consensus 44 ~kfl~eIi~~~P~~d~~~Wd~IA~~mN~yly~~~~w~t~~~FyDG~~C~~~Fr~~v 99 (108)
T PF00674_consen 44 MKFLKEIIEVKPGVDMKKWDIIASRMNQYLYEEGLWNTPYFFYDGKDCYRFFRRLV 99 (108)
T ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCcCcccCcHHHHHHHHHHh
Confidence 4667777777787788899999999842 22 4789988888764
No 174
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=43.65 E-value=4.4e+02 Score=28.28 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006420 330 ERRRKVEEEKRVAEVALQQKKVKEKEK 356 (646)
Q Consensus 330 er~~ke~ee~~~~e~~~~~KK~ke~~K 356 (646)
++++.++-+++..+.++..++.++..+
T Consensus 183 e~r~~eEkerR~~q~~~~~~~~~~~~~ 209 (291)
T PF06098_consen 183 EKRRREEKERRIKQQKERLEKEKELRE 209 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433444443333
No 175
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.72 E-value=3.6e+02 Score=32.53 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=5.0
Q ss_pred CCcHHHHHH
Q 006420 38 PAGHSFHAA 46 (646)
Q Consensus 38 ~~g~~f~~~ 46 (646)
.+|..|..+
T Consensus 165 ~~g~~~~~y 173 (697)
T PF09726_consen 165 TLGFGFKSY 173 (697)
T ss_pred EeeccHHHH
Confidence 456666544
No 176
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=42.65 E-value=1.2e+02 Score=34.68 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhcchhhhh
Q 006420 151 ETHFKAVQEAYEVLIDPVKRR 171 (646)
Q Consensus 151 ~~~F~~I~~AYeiLsDp~kR~ 171 (646)
+.....+|.+..-|+|-+.|-
T Consensus 203 n~~ls~lqq~mqrls~qqe~l 223 (708)
T KOG3654|consen 203 NAALSSLQQDMQRLSDQQERL 223 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334455666666677655554
No 177
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.42 E-value=2.6e+02 Score=31.43 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=5.1
Q ss_pred hhhhHHhcccc
Q 006420 227 NFYNFWYSFKS 237 (646)
Q Consensus 227 ~FY~fw~~F~S 237 (646)
.+|++-..+..
T Consensus 284 ~v~~~l~k~~~ 294 (440)
T KOG2357|consen 284 KVVSQLNKYGD 294 (440)
T ss_pred HHHHHHHHHHh
Confidence 44554444443
No 178
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=37.85 E-value=32 Score=28.53 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.5
Q ss_pred chhHHHhHhcCCCCHHHHHHHHHHH
Q 006420 484 RWEVISEYIGTGRSVEEILKATKTV 508 (646)
Q Consensus 484 RW~~IA~~~~~~Rt~ke~~~~~k~~ 508 (646)
-|..||..+|..-++.+|..+|+++
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~L 52 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNL 52 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHH
Confidence 5999999998767899999999985
No 179
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=35.89 E-value=6.3e+02 Score=29.63 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=14.3
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhh
Q 006420 99 LLGLSHLRYLATEDQIRKSYRETALK 124 (646)
Q Consensus 99 vLGl~~~r~~At~~eIKkAYrklalk 124 (646)
|-||+. ..-..++|.-|-+.-+.
T Consensus 410 VSGLSs---tTRAtDLKnlFSKyGKV 432 (940)
T KOG4661|consen 410 VSGLSS---TTRATDLKNLFSKYGKV 432 (940)
T ss_pred eecccc---chhhhHHHHHHHHhcce
Confidence 557765 44456788777765443
No 180
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=35.67 E-value=45 Score=37.51 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHH-HhhCCCCCHHHHHHHHHHHH
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRWERV-ATAVPGKTVIQCKKKFASLK 636 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~I-A~~Vpgrt~~~c~~Ryk~l~ 636 (646)
..||.-|-.+||.||.+|+++ +..| +..+|=||...++.=|-..+
T Consensus 286 EEWSasEanLFEeALeKyGKD----FndIrqdfLPWKSl~sIveyYYmwK 331 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKD----FNDIRQDFLPWKSLTSIVEYYYMWK 331 (693)
T ss_pred hhccchhhHHHHHHHHHhccc----HHHHHHhhcchHHHHHHHHHHHHHh
Confidence 479999999999999999876 7777 46889999999887765554
No 181
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=35.52 E-value=4.3e+02 Score=25.80 Aligned_cols=75 Identities=29% Similarity=0.329 Sum_probs=0.0
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 006420 290 RDPRILKRKEAEKAEKQKKKEAKYLAKKLQEEEAARAAEEERRRKVEEEKRVAEV------ALQQKKVKEKEKKLLRKER 363 (646)
Q Consensus 290 ~DpRik~~keeek~~k~~~k~~k~~~~r~~~ee~~~~~eeer~~ke~ee~~~~e~------~~~~KK~ke~~Kk~lkKek 363 (646)
.||.. -+++..+.++..+=..+...+-+|+.+...+++.+...|+...... .....-+.+..++..|.+.
T Consensus 41 lDpa~----~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KEe~ 116 (157)
T PF15236_consen 41 LDPAQ----IEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKEEE 116 (157)
T ss_pred CCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q 006420 364 TRLRT 368 (646)
Q Consensus 364 k~lR~ 368 (646)
..+++
T Consensus 117 ~~~k~ 121 (157)
T PF15236_consen 117 QTRKT 121 (157)
T ss_pred HHHHH
No 182
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=34.75 E-value=2.7e+02 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhhHHHH
Q 006420 268 LTEKARKEEYARIRTLVDNAYKRDPRILKRK 298 (646)
Q Consensus 268 ~r~k~kke~~~rir~LV~~a~~~DpRik~~k 298 (646)
.|..+.++...-+..|-+.+.+.+|-.+.-.
T Consensus 51 ~r~~Rq~e~~~~~~~lKe~skSdkPIW~~~~ 81 (128)
T PF07960_consen 51 NRELRQQEFDEFMKILKETSKSDKPIWKTGK 81 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCceeeCC
Confidence 3444555666666677788889899887766
No 183
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=34.22 E-value=48 Score=32.69 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCCC-cchhHHHhHhcCCCCHHHHHHHHHHHh
Q 006420 460 KPWSKEEIELLRKGMQKY--PKGTS-RRWEVISEYIGTGRSVEEILKATKTVL 509 (646)
Q Consensus 460 ~~Wt~eE~~~L~kav~~~--p~gt~-~RW~~IA~~~~~~Rt~ke~~~~~k~~l 509 (646)
..||.|++.+|...|-.| -+||- .-.+.++..+ +||.-.|--||..++
T Consensus 6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~v 56 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVV 56 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHH
Confidence 469999999999998877 23332 3577778888 599999999996653
No 184
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=33.55 E-value=5.5e+02 Score=26.42 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhcChhhHHHHHHHHH
Q 006420 261 MERQNAKLTEKARKEEYARIRTLVDNAYKRDPRILKRKEAEKA 303 (646)
Q Consensus 261 ~Ek~N~k~r~k~kke~~~rir~LV~~a~~~DpRik~~keeek~ 303 (646)
|-+..+............|...+..+..+.+--|..++.+...
T Consensus 104 m~k~~~~~~~~k~~k~~~Rek~Ia~nM~Kmpk~i~e~~~~~~k 146 (217)
T PF10147_consen 104 MLKELREKKEEKEEKRLAREKEIAKNMAKMPKWIAEWKAKIAK 146 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444455555556666777777777777777666655433
No 185
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=33.46 E-value=82 Score=28.07 Aligned_cols=53 Identities=25% Similarity=0.307 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHhC----CCCCChhHHHHHhhCC-----CCCHHHHHHHHHHHHHHHh
Q 006420 588 DAWSAVQERALVQALKTF----PKETSQRWERVATAVP-----GKTVIQCKKKFASLKENFR 640 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~----p~~~~~rW~~IA~~Vp-----grt~~~c~~Ryk~l~~~vk 640 (646)
..||.++.-.|.+||..| +.+....|..+...|- .=|+.|......-|+.-+.
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~ 66 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYR 66 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 369999999999999999 3333356655544443 3488888777777665544
No 186
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=1e+02 Score=34.37 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 006420 276 EYARIRTLVD 285 (646)
Q Consensus 276 ~~~rir~LV~ 285 (646)
.+.+|..|+.
T Consensus 337 ~me~iv~i~~ 346 (440)
T KOG2357|consen 337 DMEDIVEILN 346 (440)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 187
>PF13446 RPT: A repeated domain in UCH-protein
Probab=32.82 E-value=76 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.9
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHhhh
Q 006420 94 QDHYALLGLSHLRYLATEDQIRKSYRETAL 123 (646)
Q Consensus 94 ~d~Y~vLGl~~~r~~At~~eIKkAYrklal 123 (646)
.+-|.+|||++ ..+++.|-.+|...+.
T Consensus 5 ~~Ay~~Lgi~~---~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDE---DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCC---CCCHHHHHHHHHHHHH
Confidence 35799999988 8999999999998777
No 188
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=31.78 E-value=65 Score=35.44 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=37.8
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCCCC------------cchhHHHhHh----cCCCCHHHHHHHH
Q 006420 458 KEKPWSKEEIELLRKGMQKYPKGTS------------RRWEVISEYI----GTGRSVEEILKAT 505 (646)
Q Consensus 458 ~~~~Wt~eE~~~L~kav~~~p~gt~------------~RW~~IA~~~----~~~Rt~ke~~~~~ 505 (646)
..+.||++=.+-+..|+..||+-+. .|=+.||.|| |..||-|||-.+-
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHI 138 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI 138 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 5678999999999999999977432 3889999999 4458888775443
No 189
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.10 E-value=7.9e+02 Score=29.72 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=5.5
Q ss_pred HHHHHhHHHHH
Q 006420 260 WMERQNAKLTE 270 (646)
Q Consensus 260 ~~Ek~N~k~r~ 270 (646)
-+|.+-++.|.
T Consensus 422 rLE~dvkkLra 432 (697)
T PF09726_consen 422 RLEADVKKLRA 432 (697)
T ss_pred HHHHHHHHHHH
Confidence 35555555444
No 190
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=30.26 E-value=3.4e+02 Score=27.38 Aligned_cols=14 Identities=36% Similarity=0.356 Sum_probs=8.8
Q ss_pred HhhhcChhhHHHHH
Q 006420 286 NAYKRDPRILKRKE 299 (646)
Q Consensus 286 ~a~~~DpRik~~ke 299 (646)
+-|..|||=-+|++
T Consensus 180 fGy~vDprd~RF~e 193 (225)
T KOG4848|consen 180 FGYWVDPRDPRFEE 193 (225)
T ss_pred hCccCCCCCHHHHH
Confidence 34666777666654
No 191
>smart00426 TEA TEA domain.
Probab=28.28 E-value=81 Score=26.46 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCC
Q 006420 588 DAWSAVQERALVQALKTFPKE 608 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~ 608 (646)
+.|+++=..+|++||..||+.
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~ 24 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPC 24 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCcc
Confidence 579999999999999999974
No 192
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=27.82 E-value=98 Score=28.38 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHhhhhcCCCchhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHhcchh
Q 006420 108 LATEDQIRKSYRETALKYHPDKQAALLFAEETEAAKQAKKDEIETHFKAVQEAYEVLIDPV 168 (646)
Q Consensus 108 ~At~~eIKkAYrklalk~HPDK~~~~~~~e~~e~~~~~~~~~~~~~F~~I~~AYeiLsDp~ 168 (646)
..+..+++.|.|..-++.|||..... + ..+...++-++.++.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~--P--------~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQH--P--------EEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccC--h--------HHHHhhHHHHHHHHHHHHHHhccC
Confidence 35667899999999999999987642 1 123445667888888888887654
No 193
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=26.41 E-value=6.4e+02 Score=31.46 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=5.2
Q ss_pred cccccccccc
Q 006420 94 QDHYALLGLS 103 (646)
Q Consensus 94 ~d~Y~vLGl~ 103 (646)
.|.|.+++|.
T Consensus 598 ~D~YsliaLG 607 (1018)
T KOG2002|consen 598 TDAYSLIALG 607 (1018)
T ss_pred CchhHHHHhh
Confidence 3555555554
No 194
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=25.36 E-value=1.5e+02 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHhCCC-----CCChhHHHHHhhCC-CCCHHHHHHHH-HHH
Q 006420 588 DAWSAVQERALVQALKTFPK-----ETSQRWERVATAVP-GKTVIQCKKKF-ASL 635 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~-----~~~~rW~~IA~~Vp-grt~~~c~~Ry-k~l 635 (646)
.+.|.+||.+|..-|+.+.. +...=|..++..-| ..|=.--++|| |.|
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L 57 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHL 57 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999977632 23577999998777 77777778898 444
No 195
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=25.22 E-value=1e+03 Score=26.93 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHH-hCCC
Q 006420 588 DAWSAVQERALVQALK-TFPK 607 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~-~~p~ 607 (646)
.|=|.+|...|...|. .|++
T Consensus 383 ~pLs~~q~~~L~~~L~k~~g~ 403 (445)
T PRK13428 383 AELSDAQRTRLTEVLSRIYGR 403 (445)
T ss_pred cCCCHHHHHHHHHHHHHHHCC
Confidence 3567777777777774 4543
No 196
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=25.04 E-value=50 Score=36.48 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCChhHHHHHhh-----CCC-CCHHHHHHHHHHHHHHHh
Q 006420 588 DAWSAVQERALVQALKTFPKETSQRWERVATA-----VPG-KTVIQCKKKFASLKENFR 640 (646)
Q Consensus 588 ~~WT~eE~~~Le~al~~~p~~~~~rW~~IA~~-----Vpg-rt~~~c~~Ryk~l~~~vk 640 (646)
..||.+|..-|-..-+.|.- ||--||.. .+. ||.++.+.||.+++..+-
T Consensus 131 n~WskeETD~LF~lck~fDL----Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~ 185 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL----RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLL 185 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe----eEEEEeeccchhhccccccHHHHHHHHHHHHHHHH
Confidence 57999999999999999963 45444432 565 999999999988776543
No 197
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=24.98 E-value=7.7e+02 Score=25.37 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHH-hCCCCCCcchhHHHhHhc
Q 006420 459 EKPWSKEEIELLRKGMQ-KYPKGTSRRWEVISEYIG 493 (646)
Q Consensus 459 ~~~Wt~eE~~~L~kav~-~~p~gt~~RW~~IA~~~~ 493 (646)
..|=|+++...|...+. .|+....-.+.+=..-||
T Consensus 184 a~~l~~~~~~~i~~~l~~~~~~~v~~~~~vdp~lig 219 (246)
T TIGR03321 184 AFELPEEQREQIRDTIRETLGPEIRLRFQTEPDLIG 219 (246)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCCeeEEeeeCchhcC
Confidence 45678888888888875 443333333444444444
No 198
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=24.76 E-value=96 Score=34.17 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCC---------C---hhHHHHHhhCC-----CCCHHHHHHHHHHHHH
Q 006420 585 SDQDAWSAVQERALVQALKTFPKET---------S---QRWERVATAVP-----GKTVIQCKKKFASLKE 637 (646)
Q Consensus 585 ~~~~~WT~eE~~~Le~al~~~p~~~---------~---~rW~~IA~~Vp-----grt~~~c~~Ryk~l~~ 637 (646)
...+.||++=+..|..||+.||... + -|=+.||-.|- .||.+|+--|-+.|..
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 4567899999999999999999842 1 36688887652 5788888888776654
No 199
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=21.85 E-value=73 Score=24.79 Aligned_cols=26 Identities=31% Similarity=0.645 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCCCCcchhHHHhHhcC
Q 006420 465 EEIELLRKGMQKYPKGTSRRWEVISEYIGT 494 (646)
Q Consensus 465 eE~~~L~kav~~~p~gt~~RW~~IA~~~~~ 494 (646)
+...+|..+| .+..++..+||+|+|-
T Consensus 19 ~~~d~F~~~L----~~s~D~F~vIaeyfGr 44 (49)
T PF12451_consen 19 DQHDLFFKQL----EESEDRFSVIAEYFGR 44 (49)
T ss_pred hcHHHHHHHH----HhCCCCchhHHHHHcc
Confidence 3447888888 3667899999999963
No 200
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=21.84 E-value=2.1e+02 Score=27.14 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHH
Q 006420 593 VQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKE 637 (646)
Q Consensus 593 eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~ 637 (646)
+-|..|..+|+.-|.- -|..||..+ |-|...|..|++.|.+
T Consensus 9 ~~D~~Il~~Lq~d~R~---s~~eiA~~l-glS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 9 NLDRGILEALMENART---PYAELAKQF-GVSPGTIHVRVEKMKQ 49 (153)
T ss_pred HHHHHHHHHHHHcCCC---CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4678888999998754 599999987 7999999999999976
No 201
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=21.05 E-value=3e+02 Score=23.78 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCC----CCcchhHHHhHhcCCC----CHHHHHHHHHHHh
Q 006420 465 EEIELLRKGMQKYPKG----TSRRWEVISEYIGTGR----SVEEILKATKTVL 509 (646)
Q Consensus 465 eE~~~L~kav~~~p~g----t~~RW~~IA~~~~~~R----t~ke~~~~~k~~l 509 (646)
=++-.|-.+|.++.+- ..+.|..||..+|-.- ....+...|..+|
T Consensus 32 vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 32 LDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred CcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 4678888999998331 2368999999997432 2455556666665
No 202
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=20.98 E-value=1.7e+02 Score=28.21 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 006420 593 VQERALVQALKTFPKETSQRWERVATAVPGKTVIQCKKKFASLKEN 638 (646)
Q Consensus 593 eE~~~Le~al~~~p~~~~~rW~~IA~~Vpgrt~~~c~~Ryk~l~~~ 638 (646)
+=|..|..+|+.-+.- .|..||..| |-|..-|.+|++.|.+.
T Consensus 14 ~~D~~IL~~Lq~d~R~---s~~eiA~~l-glS~~tv~~Ri~rL~~~ 55 (164)
T PRK11169 14 RIDRNILNELQKDGRI---SNVELSKRV-GLSPTPCLERVRRLERQ 55 (164)
T ss_pred HHHHHHHHHhccCCCC---CHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 4577888899888754 599999988 79999999999999763
Done!