Query 006421
Match_columns 645
No_of_seqs 602 out of 3390
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 23:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 6.6E-20 1.4E-24 219.9 15.7 241 346-604 103-353 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.7E-19 3.7E-24 216.3 15.7 231 357-604 137-377 (968)
3 KOG4194 Membrane glycoprotein 99.7 6.9E-19 1.5E-23 193.1 5.6 242 350-603 92-385 (873)
4 KOG4194 Membrane glycoprotein 99.7 4.4E-19 9.6E-24 194.6 3.7 236 346-595 135-404 (873)
5 KOG0444 Cytoskeletal regulator 99.7 4E-19 8.6E-24 195.6 -0.5 265 310-605 3-314 (1255)
6 KOG0444 Cytoskeletal regulator 99.7 2.7E-19 5.9E-24 196.9 -3.7 214 350-576 93-338 (1255)
7 PRK15387 E3 ubiquitin-protein 99.6 1.4E-15 3.1E-20 177.4 15.3 206 360-603 242-465 (788)
8 PF14580 LRR_9: Leucine-rich r 99.6 1.5E-15 3.2E-20 148.7 5.9 153 413-570 5-160 (175)
9 PRK15387 E3 ubiquitin-protein 99.6 1.9E-14 4.2E-19 168.0 13.3 187 360-576 282-468 (788)
10 KOG0617 Ras suppressor protein 99.5 1.6E-16 3.5E-21 153.1 -4.6 153 383-539 33-191 (264)
11 PRK15370 E3 ubiquitin-protein 99.5 9.4E-14 2E-18 162.6 13.5 163 361-539 221-385 (754)
12 KOG0472 Leucine-rich repeat pr 99.5 2E-16 4.3E-21 168.1 -9.3 185 351-539 82-293 (565)
13 PRK15370 E3 ubiquitin-protein 99.5 1.4E-13 2.9E-18 161.3 13.3 175 360-558 199-375 (754)
14 KOG0472 Leucine-rich repeat pr 99.5 6.6E-16 1.4E-20 164.2 -6.2 179 351-533 128-310 (565)
15 KOG0617 Ras suppressor protein 99.5 7.9E-16 1.7E-20 148.4 -6.5 178 356-536 29-215 (264)
16 KOG0618 Serine/threonine phosp 99.4 2.5E-14 5.4E-19 164.5 -1.4 40 383-422 241-281 (1081)
17 KOG0618 Serine/threonine phosp 99.4 3.3E-14 7.2E-19 163.4 -1.7 195 353-557 257-483 (1081)
18 PF14580 LRR_9: Leucine-rich r 99.4 3.9E-13 8.4E-18 131.7 4.6 140 389-528 3-148 (175)
19 KOG0532 Leucine-rich repeat (L 99.4 3.2E-14 6.8E-19 156.8 -4.1 196 357-560 72-270 (722)
20 KOG1259 Nischarin, modulator o 99.3 4E-13 8.7E-18 138.9 3.7 210 352-565 206-444 (490)
21 cd00116 LRR_RI Leucine-rich re 99.3 3E-12 6.5E-17 133.5 8.9 82 427-508 137-235 (319)
22 KOG3207 Beta-tubulin folding c 99.3 1.7E-13 3.7E-18 147.4 -1.6 218 355-575 141-379 (505)
23 PLN03210 Resistant to P. syrin 99.3 3.7E-11 7.9E-16 147.8 17.0 193 353-558 551-755 (1153)
24 KOG4237 Extracellular matrix p 99.3 2E-13 4.4E-18 145.3 -3.6 205 341-547 72-373 (498)
25 cd00116 LRR_RI Leucine-rich re 99.3 2.7E-12 5.9E-17 133.8 4.8 205 352-557 73-314 (319)
26 PLN03210 Resistant to P. syrin 99.3 8E-11 1.7E-15 144.8 18.1 110 353-465 627-741 (1153)
27 COG4886 Leucine-rich repeat (L 99.2 4.3E-12 9.4E-17 137.7 5.1 182 354-539 110-296 (394)
28 KOG4237 Extracellular matrix p 99.1 4E-12 8.7E-17 135.6 -1.6 109 377-485 61-177 (498)
29 KOG1859 Leucine-rich repeat pr 99.1 3.1E-12 6.7E-17 144.1 -5.1 206 353-564 102-325 (1096)
30 COG4886 Leucine-rich repeat (L 99.1 7.2E-11 1.6E-15 128.2 5.0 184 363-558 96-285 (394)
31 KOG0531 Protein phosphatase 1, 99.0 1.7E-11 3.6E-16 135.0 -2.4 174 357-534 69-246 (414)
32 KOG0532 Leucine-rich repeat (L 99.0 7.9E-12 1.7E-16 138.2 -6.0 162 384-557 76-241 (722)
33 KOG1259 Nischarin, modulator o 99.0 3.6E-11 7.9E-16 124.6 -1.4 126 383-509 284-414 (490)
34 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.4E-15 127.3 0.2 176 355-534 90-269 (414)
35 KOG3207 Beta-tubulin folding c 98.8 5.9E-10 1.3E-14 120.5 -0.2 182 352-534 113-315 (505)
36 KOG2982 Uncharacterized conser 98.8 2.8E-09 6E-14 110.8 2.1 209 359-568 70-297 (418)
37 KOG1909 Ran GTPase-activating 98.7 1.4E-08 3.1E-13 107.5 6.0 202 355-557 25-277 (382)
38 PLN03150 hypothetical protein; 98.7 4.3E-08 9.3E-13 113.7 8.5 107 429-537 420-532 (623)
39 KOG1909 Ran GTPase-activating 98.6 1.3E-08 2.8E-13 107.8 0.8 178 355-532 87-310 (382)
40 KOG1644 U2-associated snRNP A' 98.6 4.6E-08 9.9E-13 97.2 4.2 141 407-572 21-162 (233)
41 PLN03150 hypothetical protein; 98.5 1.5E-07 3.3E-12 109.2 8.2 88 450-539 419-509 (623)
42 KOG2123 Uncharacterized conser 98.5 9.8E-09 2.1E-13 106.0 -2.8 123 448-573 18-140 (388)
43 PF13855 LRR_8: Leucine rich r 98.4 2.1E-07 4.5E-12 75.0 3.5 55 429-483 3-60 (61)
44 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.8E-12 74.4 3.9 58 449-506 1-61 (61)
45 KOG1859 Leucine-rich repeat pr 98.4 5.4E-09 1.2E-13 118.5 -8.4 126 361-486 165-293 (1096)
46 KOG1644 U2-associated snRNP A' 98.3 9.7E-07 2.1E-11 87.9 5.9 119 363-481 22-149 (233)
47 COG5238 RNA1 Ran GTPase-activa 98.2 2E-06 4.4E-11 89.0 5.1 203 355-557 25-279 (388)
48 KOG4658 Apoptotic ATPase [Sign 98.0 4.3E-06 9.4E-11 100.3 5.6 137 393-531 511-653 (889)
49 KOG2739 Leucine-rich acidic nu 98.0 3.5E-06 7.6E-11 86.7 3.2 73 494-570 91-163 (260)
50 PRK15386 type III secretion pr 97.9 5E-05 1.1E-09 83.7 10.5 135 355-505 47-188 (426)
51 KOG4579 Leucine-rich repeat (L 97.9 9.4E-07 2E-11 83.4 -2.7 103 428-533 28-136 (177)
52 KOG4658 Apoptotic ATPase [Sign 97.9 7.9E-06 1.7E-10 98.1 4.3 146 383-528 523-676 (889)
53 KOG4579 Leucine-rich repeat (L 97.9 4.6E-07 1E-11 85.5 -5.5 109 428-539 54-165 (177)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 61.0 3.4 38 450-487 2-39 (44)
55 KOG2120 SCF ubiquitin ligase, 97.7 8.2E-07 1.8E-11 92.8 -7.1 171 383-560 185-373 (419)
56 PRK15386 type III secretion pr 97.6 0.00027 5.9E-09 78.0 10.9 112 361-483 73-188 (426)
57 PF12799 LRR_4: Leucine Rich r 97.6 5.3E-05 1.1E-09 57.8 3.4 39 427-465 1-40 (44)
58 KOG2982 Uncharacterized conser 97.5 3.1E-05 6.8E-10 81.2 1.0 177 352-528 89-287 (418)
59 KOG3665 ZYG-1-like serine/thre 97.3 0.00027 5.8E-09 83.2 5.8 128 427-557 122-257 (699)
60 COG5238 RNA1 Ran GTPase-activa 97.3 5.5E-05 1.2E-09 78.6 0.0 129 427-555 157-308 (388)
61 KOG3665 ZYG-1-like serine/thre 97.1 0.00037 7.9E-09 82.1 4.0 126 383-508 122-264 (699)
62 KOG2120 SCF ubiquitin ligase, 97.1 4.6E-05 1E-09 80.0 -3.2 186 361-553 186-390 (419)
63 PF13306 LRR_5: Leucine rich r 97.0 0.0026 5.6E-08 57.7 7.7 115 400-522 7-128 (129)
64 KOG2123 Uncharacterized conser 96.9 4.4E-05 9.4E-10 79.5 -5.6 77 385-461 21-100 (388)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00068 1.5E-08 70.1 2.0 52 449-500 91-149 (260)
66 PF13306 LRR_5: Leucine rich r 96.3 0.015 3.2E-07 52.6 7.6 108 383-496 12-128 (129)
67 KOG4308 LRR-containing protein 93.9 0.0011 2.5E-08 74.8 -9.2 87 448-534 203-304 (478)
68 KOG3763 mRNA export factor TAP 93.7 0.048 1E-06 61.9 3.2 91 470-562 216-313 (585)
69 PF00560 LRR_1: Leucine Rich R 93.7 0.039 8.4E-07 35.8 1.5 21 450-470 1-21 (22)
70 KOG4308 LRR-containing protein 93.3 0.0016 3.5E-08 73.6 -9.2 171 385-557 89-297 (478)
71 KOG0473 Leucine-rich repeat pr 91.0 0.0053 1.1E-07 63.0 -7.8 85 445-532 38-123 (326)
72 KOG0473 Leucine-rich repeat pr 90.5 0.0072 1.6E-07 62.1 -7.3 90 395-484 30-123 (326)
73 PF13504 LRR_7: Leucine rich r 88.8 0.26 5.7E-06 30.1 1.4 16 450-465 2-17 (17)
74 PF00560 LRR_1: Leucine Rich R 86.8 0.27 5.9E-06 31.8 0.6 15 407-421 2-16 (22)
75 PF13504 LRR_7: Leucine rich r 85.6 0.54 1.2E-05 28.7 1.5 12 407-418 3-14 (17)
76 smart00370 LRR Leucine-rich re 85.4 0.58 1.3E-05 31.1 1.7 22 404-425 1-22 (26)
77 smart00369 LRR_TYP Leucine-ric 85.4 0.58 1.3E-05 31.1 1.7 22 404-425 1-22 (26)
78 KOG1947 Leucine rich repeat pr 84.4 0.27 5.8E-06 54.1 -0.4 79 448-526 242-327 (482)
79 KOG1947 Leucine rich repeat pr 84.4 0.72 1.6E-05 50.7 2.9 126 427-557 188-328 (482)
80 smart00369 LRR_TYP Leucine-ric 80.3 1.2 2.6E-05 29.6 1.7 20 448-467 1-20 (26)
81 smart00370 LRR Leucine-rich re 80.3 1.2 2.6E-05 29.6 1.7 20 448-467 1-20 (26)
82 TIGR00864 PCC polycystin catio 74.8 3.6 7.8E-05 55.0 5.0 47 500-548 1-47 (2740)
83 KOG3864 Uncharacterized conser 70.2 3.6 7.7E-05 41.9 2.8 78 450-529 102-185 (221)
84 KOG3864 Uncharacterized conser 67.5 1.2 2.6E-05 45.2 -1.2 76 427-503 101-185 (221)
85 KOG3763 mRNA export factor TAP 66.6 3.2 7E-05 47.6 1.8 59 450-508 219-284 (585)
86 smart00365 LRR_SD22 Leucine-ri 58.5 7.8 0.00017 26.5 1.9 14 495-508 3-16 (26)
87 smart00365 LRR_SD22 Leucine-ri 58.3 7.8 0.00017 26.5 1.8 16 472-487 2-17 (26)
88 KOG4341 F-box protein containi 57.6 4.7 0.0001 45.0 1.1 154 403-561 266-437 (483)
89 smart00364 LRR_BAC Leucine-ric 56.7 6.6 0.00014 26.9 1.3 17 450-466 3-19 (26)
90 PF13516 LRR_6: Leucine Rich r 47.1 12 0.00025 24.3 1.3 14 449-462 2-15 (24)
91 KOG4341 F-box protein containi 47.0 12 0.00026 41.9 2.1 151 402-557 291-459 (483)
92 smart00368 LRR_RI Leucine rich 32.7 32 0.00069 23.5 1.7 13 450-462 3-15 (28)
93 smart00446 LRRcap occurring C- 30.2 31 0.00066 23.8 1.2 19 540-558 3-21 (26)
94 KOG4242 Predicted myosin-I-bin 26.5 66 0.0014 36.8 3.7 14 448-461 267-280 (553)
95 KOG4242 Predicted myosin-I-bin 26.2 66 0.0014 36.8 3.6 16 583-598 354-369 (553)
96 PF05725 FNIP: FNIP Repeat; I 25.3 92 0.002 23.4 3.3 31 405-435 12-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=6.6e-20 Score=219.89 Aligned_cols=241 Identities=20% Similarity=0.219 Sum_probs=188.9
Q ss_pred CCCCCCChhhhh-cccCCCEEecCCccccccchhhccCCCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCC
Q 006421 346 PETGKSPARSTA-HLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPT 422 (645)
Q Consensus 346 ~~l~~~~~~sl~-~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~ 422 (645)
..+.+.+|..+. .+.+|+.|+|++|.+.+..+. ...++|++|+|++|.++ .+| .++.+++|++|+|++|.+....+
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence 334444444444 888888888888887654333 23378889999999887 566 58889999999999998876544
Q ss_pred CCCC--CCCCEEecCCCCCCCC-c-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCC
Q 006421 423 GSMP--KGLHTLNLSRNKINTI-E-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLK 495 (645)
Q Consensus 423 ~~~~--~sL~~LdLs~N~Ls~l-p-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~L~~L~~ 495 (645)
..+. ++|++|+|++|.+.+. + .++.+++|++|+|++|.++ .+|..++++++|++|+|++|.+++. ..+..+++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 4443 7899999999988753 3 4888899999999999988 6777788999999999999988764 56888899
Q ss_pred CCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHH
Q 006421 496 LTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAK 575 (645)
Q Consensus 496 L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i~k 575 (645)
|+.|+|++|.+++. +|..+..+++|+.|+|++|.+.+.+|.. +..+++|++|+. ..|.+.+.+|..+..
T Consensus 262 L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~------~~~l~~L~~L~l---~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 262 LQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIPEL------VIQLQNLEILHL---FSNNFTGKIPVALTS 330 (968)
T ss_pred CCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCChh------HcCCCCCcEEEC---CCCccCCcCChhHhc
Confidence 99999999998875 7788889999999999999998888875 677888888875 566777777766654
Q ss_pred HHhcCCCCccccccccccCCccCccCCCC
Q 006421 576 AVLGNSSQSSQRKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 576 ~~l~~~~~sl~~~~l~~n~lSG~iPss~~ 604 (645)
...+..+.+..|.+.|.+|...+
T Consensus 331 ------l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 331 ------LPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ------CCCCCEEECcCCCCcCcCChHHh
Confidence 25677889999999999887553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=1.7e-19 Score=216.30 Aligned_cols=231 Identities=25% Similarity=0.321 Sum_probs=183.3
Q ss_pred hcccCCCEEecCCccccccchh-hccCCCccEEEecCCCCC-cCC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCE
Q 006421 357 AHLTRRSEINLSEEILHANSVI-RSLNSSSAVAHIAGIGLK-AIP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHT 431 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l-~~L~~~L~~L~Ls~N~Lt-~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~ 431 (645)
..+.+|+.|+|++|.+.+..+. ..-.++|++|+|++|.+. .+| .++++++|++|+|++|.+....+..+. ++|+.
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 4578899999999987643221 122278899999999887 566 688899999999999998865444333 78999
Q ss_pred EecCCCCCCC-Cc-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCC
Q 006421 432 LNLSRNKINT-IE-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 432 LdLs~N~Ls~-lp-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~L~~L~~L~~LdLS~N~L 506 (645)
|+|++|.+++ ++ .++.+++|++|+|++|.++ .+|..++++++|+.|+|++|.+++. ..+..+.+|+.|+|++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 9999999885 34 4888999999999999887 6777788999999999999988764 4678888999999999998
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCCccc
Q 006421 507 TTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQ 586 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i~k~~l~~~~~sl~ 586 (645)
.+. +|..+..+++|+.|+|++|.+.+.+|.. +..+++|+.|+. ..+.+.+.+|..+.. ...++
T Consensus 297 ~~~--~p~~~~~l~~L~~L~l~~n~~~~~~~~~------~~~l~~L~~L~L---~~n~l~~~~p~~l~~------~~~L~ 359 (968)
T PLN00113 297 SGE--IPELVIQLQNLEILHLFSNNFTGKIPVA------LTSLPRLQVLQL---WSNKFSGEIPKNLGK------HNNLT 359 (968)
T ss_pred ccC--CChhHcCCCCCcEEECCCCccCCcCChh------HhcCCCCCEEEC---cCCCCcCcCChHHhC------CCCCc
Confidence 876 7888889999999999999998888766 677888888876 556677777766654 25677
Q ss_pred cccccccCCccCccCCCC
Q 006421 587 RKAVKRTGRSGSLPSSNQ 604 (645)
Q Consensus 587 ~~~l~~n~lSG~iPss~~ 604 (645)
.++++.|.+.|.+|....
T Consensus 360 ~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred EEECCCCeeEeeCChhHh
Confidence 888999999988886653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=6.9e-19 Score=193.12 Aligned_cols=242 Identities=24% Similarity=0.278 Sum_probs=143.4
Q ss_pred CCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC-
Q 006421 350 KSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP- 426 (645)
Q Consensus 350 ~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~- 426 (645)
..-+..+.++++|+.++|..|.++.++.+.....+|+.|+|.+|.|+.+. .+..++.|+.|||+.|.|+.|+...|+
T Consensus 92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~ 171 (873)
T KOG4194|consen 92 HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPA 171 (873)
T ss_pred cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC
Confidence 33445666777777777777777766666666666777777777777665 466677777777777777777766666
Q ss_pred -CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc---------------
Q 006421 427 -KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--------------- 487 (645)
Q Consensus 427 -~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--------------- 487 (645)
.+|++|+|++|.|+.+. .|..+.+|..|.|+.|+|+.+|.. |.++++|+.|+|..|.|.-+
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 56777777777777653 366666677777777777766654 44566666666666654321
Q ss_pred -----------ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceec
Q 006421 488 -----------EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLN 556 (645)
Q Consensus 488 -----------~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld 556 (645)
..|..|.++++|+|..|+++.... .++-+++.|+.|+|++|.|...-++. +.-.++|+.|+
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~rih~d~------WsftqkL~~Ld 323 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQRIHIDS------WSFTQKLKELD 323 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhc--ccccccchhhhhccchhhhheeecch------hhhcccceeEe
Confidence 113334455556666665555422 44445555555555555554422222 33345555554
Q ss_pred ccCCChhhhhhhhh-------------------HHHHHHHhcCCCCccccccccccCCccCccCCC
Q 006421 557 KQPIKPQRARELLT-------------------DSIAKAVLGNSSQSSQRKAVKRTGRSGSLPSSN 603 (645)
Q Consensus 557 ~~~is~n~~~g~i~-------------------~~i~k~~l~~~~~sl~~~~l~~n~lSG~iPss~ 603 (645)
+. .|++...-+ +.+.+.++-. ..++..+++++|.+++.|....
T Consensus 324 Ls---~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 324 LS---SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-LSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred cc---ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-hhhhhhhcCcCCeEEEEEecch
Confidence 42 221111111 2233333322 3677889999999999987643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=4.4e-19 Score=194.59 Aligned_cols=236 Identities=22% Similarity=0.264 Sum_probs=159.1
Q ss_pred CCCCCCChhhhhcccCCCEEecCCccccccchhhccC-CCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCC
Q 006421 346 PETGKSPARSTAHLTRRSEINLSEEILHANSVIRSLN-SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPT 422 (645)
Q Consensus 346 ~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~-~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~ 422 (645)
+-+...-...+..++.|+.||||.|.+..+.....-. .+++.|+|++|.|+.+. .|..|.+|..|.|++|+|+.+|.
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 3344455678888999999999999988775554443 78999999999999876 68888999999999999999998
Q ss_pred CCCC--CCCCEEecCCCCCCCCc--CCCCCC------------------------CCcEEEccCCccccccCc-CcCCCC
Q 006421 423 GSMP--KGLHTLNLSRNKINTIE--GLREMT------------------------RLRVLDLSYNRIFRIGHG-LSNCTL 473 (645)
Q Consensus 423 ~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~------------------------sL~~LdLS~N~Ls~LP~~-l~~L~s 473 (645)
..|. ++|+.|+|..|+|..+. .|.+|+ ++++|+|..|+++.+..+ +.+++.
T Consensus 215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 8776 78889999888876542 244444 455555555555544433 455555
Q ss_pred CcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCC
Q 006421 474 IKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPK 551 (645)
Q Consensus 474 L~~L~Ls~N~Ls~l--~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~ 551 (645)
|+.|+|++|.|..+ ..+..+++|++|+|++|+|+.++. ..|..+..|++|+|++|.+. .+.+..+..+.+
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~--~sf~~L~~Le~LnLs~Nsi~------~l~e~af~~lss 366 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE--GSFRVLSQLEELNLSHNSID------HLAEGAFVGLSS 366 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCCh--hHHHHHHHhhhhcccccchH------HHHhhHHHHhhh
Confidence 55555555555554 445555666666666666665533 55555666666666666654 344556667788
Q ss_pred CceecccCCChhhhhhhhhHHHHHHHhcCCCCccccccccccCC
Q 006421 552 LVYLNKQPIKPQRARELLTDSIAKAVLGNSSQSSQRKAVKRTGR 595 (645)
Q Consensus 552 L~~Ld~~~is~n~~~g~i~~~i~k~~l~~~~~sl~~~~l~~n~l 595 (645)
|+.||+ ..|++...|.+.- .++.. ..++.++.+.+|++
T Consensus 367 L~~LdL---r~N~ls~~IEDaa--~~f~g-l~~LrkL~l~gNql 404 (873)
T KOG4194|consen 367 LHKLDL---RSNELSWCIEDAA--VAFNG-LPSLRKLRLTGNQL 404 (873)
T ss_pred hhhhcC---cCCeEEEEEecch--hhhcc-chhhhheeecCcee
Confidence 888886 6788887777632 23322 35566667776665
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=4e-19 Score=195.57 Aligned_cols=265 Identities=23% Similarity=0.279 Sum_probs=187.3
Q ss_pred CCCCCcchhhhhhcccCCCCCcCCcccccccccCCC-------------CCCCCCChhhhhcccCCCEEecCCccccccc
Q 006421 310 AESSSFKRVDEWVKDLGMETPFEDDEVAEGVIFPPS-------------PETGKSPARSTAHLTRRSEINLSEEILHANS 376 (645)
Q Consensus 310 ~~s~p~~~~~~Wv~~l~~~~~~ed~~~~~~i~~~~~-------------~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~ 376 (645)
.+.+|| |++++++ +++|.+-.||.. ...-..+|..++.+.+|.+|.+++|.+...-
T Consensus 3 tgVLpF------VrGvDfs-----gNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh 71 (1255)
T KOG0444|consen 3 TGVLPF------VRGVDFS-----GNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH 71 (1255)
T ss_pred ccccce------eeccccc-----CCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh
Confidence 456777 8888888 555555444421 1112346889999999999999999887543
Q ss_pred hhhccCCCccEEEecCCCCC--cCC-CCCCCCCCCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCCcC--CCCCCC
Q 006421 377 VIRSLNSSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIEG--LREMTR 450 (645)
Q Consensus 377 ~l~~L~~~L~~L~Ls~N~Lt--~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~lp~--L~~L~s 450 (645)
.-..-.+.|+.+.+..|+|+ .|| .+..|..|+.|||++|++...|... ..+++-.|+|++|+|..||. +-+|+.
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 32233368888999999997 687 7889999999999999999888653 34889999999999999975 778999
Q ss_pred CcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc--cc-------------------------ccCCCCCCEEECcC
Q 006421 451 LRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI--EG-------------------------LHRLLKLTVLDMSF 503 (645)
Q Consensus 451 L~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~-------------------------L~~L~~L~~LdLS~ 503 (645)
|-+|||++|++..+|+.+..+..|+.|.|++|.|... .. +..+.+|..+||+.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 9999999999999999999999999999999976432 22 33344566666666
Q ss_pred CCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCCCC
Q 006421 504 NKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNSSQ 583 (645)
Q Consensus 504 N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i~k~~l~~~~~ 583 (645)
|.+.. +|.++-++.+|+.|+|++|.|+. +... .+...+|+.||+ +.|++ ..+|+.+++. .
T Consensus 232 N~Lp~---vPecly~l~~LrrLNLS~N~ite-L~~~------~~~W~~lEtLNl---SrNQL-t~LP~avcKL------~ 291 (1255)
T KOG0444|consen 232 NNLPI---VPECLYKLRNLRRLNLSGNKITE-LNMT------EGEWENLETLNL---SRNQL-TVLPDAVCKL------T 291 (1255)
T ss_pred cCCCc---chHHHhhhhhhheeccCcCceee-eecc------HHHHhhhhhhcc---ccchh-ccchHHHhhh------H
Confidence 66655 56666677777777777776653 2111 223345555554 44443 3567778775 4
Q ss_pred ccccccccccCCc-cCccCCCCC
Q 006421 584 SSQRKAVKRTGRS-GSLPSSNQR 605 (645)
Q Consensus 584 sl~~~~l~~n~lS-G~iPss~~~ 605 (645)
.+..+.+..|.+. ..|||.+|.
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred HHHHHHhccCcccccCCccchhh
Confidence 4445555555443 238888864
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=2.7e-19 Score=196.86 Aligned_cols=214 Identities=24% Similarity=0.302 Sum_probs=163.1
Q ss_pred CCChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC--CCCCCCCCEEEccCCcCCCCCCCCCC-
Q 006421 350 KSPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT--ISHFSSLRSVNLSNNFIVHIPTGSMP- 426 (645)
Q Consensus 350 ~~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs--L~~L~~L~~LdLs~N~Lt~ip~~~~~- 426 (645)
.-+|..+.+|..|+.||||.|++...+.-..-..++-+|+|++|+|..||. +-+|..|-.|||++|++..+|+..-.
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL 172 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence 345778999999999999999998765555555888899999999999993 67899999999999999998876433
Q ss_pred CCCCEEecCCCCCCC--------------------------Cc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEc
Q 006421 427 KGLHTLNLSRNKINT--------------------------IE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYL 479 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~--------------------------lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~L 479 (645)
.+|++|.|++|.|.. +| .+..|.+|..+||+.|.+..+|..+.++.+|+.|+|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNL 252 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheecc
Confidence 678888888887642 11 244566788888888888888888888888888888
Q ss_pred cCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCC-cCCChhHHHHHHhcCCCCCceecc
Q 006421 480 AGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQ-SNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 480 s~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~-g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
++|+|+.+ -..+...+|+.|+|+.|+++. +|..+..+++|+.|.+.+|.++ ..||.. ++.|.+|+.+..
T Consensus 253 S~N~iteL~~~~~~W~~lEtLNlSrNQLt~---LP~avcKL~kL~kLy~n~NkL~FeGiPSG------IGKL~~Levf~a 323 (1255)
T KOG0444|consen 253 SGNKITELNMTEGEWENLETLNLSRNQLTV---LPDAVCKLTKLTKLYANNNKLTFEGIPSG------IGKLIQLEVFHA 323 (1255)
T ss_pred CcCceeeeeccHHHHhhhhhhccccchhcc---chHHHhhhHHHHHHHhccCcccccCCccc------hhhhhhhHHHHh
Confidence 88888887 345566778888888888887 7788888888888888888764 226665 566666665543
Q ss_pred cCCChhhhhhhhhHHHHHH
Q 006421 558 QPIKPQRARELLTDSIAKA 576 (645)
Q Consensus 558 ~~is~n~~~g~i~~~i~k~ 576 (645)
.|..-+..|+.++++
T Consensus 324 ----anN~LElVPEglcRC 338 (1255)
T KOG0444|consen 324 ----ANNKLELVPEGLCRC 338 (1255)
T ss_pred ----hccccccCchhhhhh
Confidence 233445666666664
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.4e-15 Score=177.37 Aligned_cols=206 Identities=19% Similarity=0.209 Sum_probs=113.2
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCC------------------CCCCCCEEEccCCcCCCCC
Q 006421 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTIS------------------HFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~------------------~L~~L~~LdLs~N~Lt~ip 421 (645)
++|+.|+|++|.+..++. +.++|+.|+|++|.|+.+|.+. .+++|+.|+|++|.|+.++
T Consensus 242 ~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP 318 (788)
T ss_pred CCCcEEEecCCccCcccC---cccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCC
Confidence 456666666665554321 2234444444444444443210 1234444444444444443
Q ss_pred CCCCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEEC
Q 006421 422 TGSMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDM 501 (645)
Q Consensus 422 ~~~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~LdL 501 (645)
. ++.+|+.|++++|.|+.+|.+ ..+|+.|+|++|+|+.+|... .+|+.|++++|.|+.++.+ +.+|+.|+|
T Consensus 319 ~--lp~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l--~~~L~~LdL 389 (788)
T PRK15387 319 A--LPSELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL--PSGLKELIV 389 (788)
T ss_pred C--CcccccccccccCcccccccc--ccccceEecCCCccCCCCCCC---cccceehhhccccccCccc--ccccceEEe
Confidence 2 223344444444444444322 135667777777777666432 3566666666666665432 246777788
Q ss_pred cCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHHHhcCC
Q 006421 502 SFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKAVLGNS 581 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i~k~~l~~~ 581 (645)
++|.|+.+ |.. ..+|+.|+|++|.|.+ +|.. +.+|+.|+. ..|.++ .+|..+...
T Consensus 390 s~N~Lt~L---P~l---~s~L~~LdLS~N~Lss-IP~l---------~~~L~~L~L---s~NqLt-~LP~sl~~L----- 444 (788)
T PRK15387 390 SGNRLTSL---PVL---PSELKELMVSGNRLTS-LPML---------PSGLLSLSV---YRNQLT-RLPESLIHL----- 444 (788)
T ss_pred cCCcccCC---CCc---ccCCCEEEccCCcCCC-CCcc---------hhhhhhhhh---ccCccc-ccChHHhhc-----
Confidence 88877764 322 2567788888888775 5542 234555554 445555 456666542
Q ss_pred CCccccccccccCCccCccCCC
Q 006421 582 SQSSQRKAVKRTGRSGSLPSSN 603 (645)
Q Consensus 582 ~~sl~~~~l~~n~lSG~iPss~ 603 (645)
..+..+.+++|.|+|.+|.+.
T Consensus 445 -~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 445 -SSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -cCCCeEECCCCCCCchHHHHH
Confidence 456678888899988877654
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.58 E-value=1.5e-15 Score=148.74 Aligned_cols=153 Identities=37% Similarity=0.488 Sum_probs=61.3
Q ss_pred cCCcCCCCCCCCCCCCCCEEecCCCCCCCCcCCC-CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccc
Q 006421 413 SNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGLR-EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGL 490 (645)
Q Consensus 413 s~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L~-~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L 490 (645)
..+.|..++...-+..++.|+|.+|.|+.++.++ .+.+|+.|+|++|.|+.+. .+..++.|+.|+|++|.|+.+ +.+
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 3444444444333445666666666666666665 4667777777777777664 566677777777777777776 334
Q ss_pred -cCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhh
Q 006421 491 -HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELL 569 (645)
Q Consensus 491 -~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i 569 (645)
..+++|++|+|++|+|..+..+ ..+..+++|+.|+|.+||++.. ..|+.+++..+|+|+.||...|+..++..+.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~---~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~ 159 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEK---KNYRLFVIYKLPSLKVLDGQDVTEEERQEAE 159 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGS---TTHHHHHHHH-TT-SEETTEETTS-B-----
T ss_pred HHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccch---hhHHHHHHHHcChhheeCCEEccHHHhcccc
Confidence 3567788888888887776554 4467899999999999999753 4799999999999999999999988877654
Q ss_pred h
Q 006421 570 T 570 (645)
Q Consensus 570 ~ 570 (645)
.
T Consensus 160 ~ 160 (175)
T PF14580_consen 160 K 160 (175)
T ss_dssp -
T ss_pred c
Confidence 3
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=1.9e-14 Score=168.02 Aligned_cols=187 Identities=22% Similarity=0.267 Sum_probs=130.5
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCC
Q 006421 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~L 439 (645)
..|+.|+|++|.+..++. ..++|+.|+|++|+|+.+|.+ ...|+.|++++|.|+.+|. ++.+|+.|+|++|+|
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPT--LPSGLQELSVSDNQL 354 (788)
T ss_pred hhcCEEECcCCccccccc---cccccceeECCCCccccCCCC--cccccccccccCccccccc--cccccceEecCCCcc
Confidence 456677788777765432 346788888888888887753 2457778888888887764 446788888888888
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcC
Q 006421 440 NTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANY 519 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L 519 (645)
+.+|.+ ..+|+.|++++|.|+.||... .+|+.|+|++|.|+.++.+ ..+|+.|+|++|.|+.+ |.. .
T Consensus 355 s~LP~l--p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssI---P~l---~ 421 (788)
T PRK15387 355 ASLPTL--PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSL---PML---P 421 (788)
T ss_pred CCCCCC--CcccceehhhccccccCcccc---cccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCC---Ccc---h
Confidence 887653 356777888888888777432 4678888888888776543 35688888888888764 332 2
Q ss_pred CCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHHHHH
Q 006421 520 QSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSIAKA 576 (645)
Q Consensus 520 ~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i~k~ 576 (645)
.+|+.|+|++|.|+ .+|.. +..+++|+.|++ ..|.+.+.++..+...
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~s------l~~L~~L~~LdL---s~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPES------LIHLSSETTVNL---EGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhhhccCccc-ccChH------HhhccCCCeEEC---CCCCCCchHHHHHHHH
Confidence 35677888888887 37765 556677777664 6677777777666443
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.6e-16 Score=153.08 Aligned_cols=153 Identities=26% Similarity=0.439 Sum_probs=131.6
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCc-CCCCCCCCcEEEccCC
Q 006421 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYN 459 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N 459 (645)
.+++.|.|++|+|+.+| .+..+.+|+.|++.+|+|+.+|...-. +.|+.|+++-|++..+| +|+.++.|++|||++|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 45667888899999887 788899999999999999988876433 78999999999988876 5999999999999999
Q ss_pred ccc--cccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCC
Q 006421 460 RIF--RIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNI 536 (645)
Q Consensus 460 ~Ls--~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~i 536 (645)
++. .+|..|..++.|+.|+|+.|.+.-+ +.++.+++|+.|.+..|.+.. +|..++.++.|++|.+.+|+++- +
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lrelhiqgnrl~v-l 188 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGNRLTV-L 188 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHHHHhcccceeee-c
Confidence 998 6888888889999999999999887 678999999999999998877 78889999999999999999975 6
Q ss_pred Chh
Q 006421 537 SDD 539 (645)
Q Consensus 537 P~~ 539 (645)
|.+
T Consensus 189 ppe 191 (264)
T KOG0617|consen 189 PPE 191 (264)
T ss_pred Chh
Confidence 665
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=9.4e-14 Score=162.58 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=90.7
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCC
Q 006421 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKI 439 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~L 439 (645)
+|+.|+|++|.+..++. .+..+|+.|+|++|+|+.+| .+. .+|+.|+|++|.|+.+|.. ++.+|+.|+|++|+|
T Consensus 221 nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 221 NIKTLYANSNQLTSIPA--TLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPEN-LPEELRYLSVYDNSI 295 (754)
T ss_pred CCCEEECCCCccccCCh--hhhccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccc-cCCCCcEEECCCCcc
Confidence 55566666655554321 23345556666666666555 222 3566666666666655432 334566666666666
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCccc-ccCCCCCCEEECcCCCCCCccchhHhhhc
Q 006421 440 NTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEG-LHRLLKLTVLDMSFNKITTTKALGQLVAN 518 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~-L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~ 518 (645)
+.+|.. -..+|+.|+|++|.|+.+|..+. ++|+.|++++|.|+.++. + +++|+.|+|++|+|+. +|..+
T Consensus 296 t~LP~~-lp~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~---LP~~l-- 365 (754)
T PRK15370 296 RTLPAH-LPSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV---LPETL-- 365 (754)
T ss_pred ccCccc-chhhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhh--cCcccEEECCCCCCCc---CChhh--
Confidence 655431 01345556666666655554332 466667777776666532 2 2567777777777765 34333
Q ss_pred CCCCcEEEccCCCCCcCCChh
Q 006421 519 YQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 519 L~sL~~LdLs~N~L~g~iP~~ 539 (645)
.++|+.|+|++|.|+. +|..
T Consensus 366 p~~L~~LdLs~N~Lt~-LP~~ 385 (754)
T PRK15370 366 PPTITTLDVSRNALTN-LPEN 385 (754)
T ss_pred cCCcCEEECCCCcCCC-CCHh
Confidence 2567777777777764 5543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=2e-16 Score=168.14 Aligned_cols=185 Identities=25% Similarity=0.289 Sum_probs=120.0
Q ss_pred CChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CC
Q 006421 351 SPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KG 428 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~s 428 (645)
..|..++.+..+..++.+.|.+..++.-..-..++..|+++.|.+..+| +++.+..|..|+..+|+++.+|.+.+. .+
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 3456777888888888888877765554444467778888888888777 678888888888888888877765433 45
Q ss_pred CCEEecCCCCCCCCc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccc-----------------
Q 006421 429 LHTLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGL----------------- 490 (645)
Q Consensus 429 L~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L----------------- 490 (645)
|..|++.+|++..++ ..-.++.|++||+..|-++.+|+.++.+.+|..|+|.+|+|..++.|
T Consensus 162 l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH
Confidence 555555555555542 22235555555555555555555555555555555555555444333
Q ss_pred -------cCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006421 491 -------HRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 491 -------~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
..+..|.+|||..|+++. +|..+..+.+|..||+++|.|++ +|..
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke---~Pde~clLrsL~rLDlSNN~is~-Lp~s 293 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKE---VPDEICLLRSLERLDLSNNDISS-LPYS 293 (565)
T ss_pred hhHHHHhcccccceeeecccccccc---CchHHHHhhhhhhhcccCCcccc-CCcc
Confidence 456666777777777766 66677777777777777777776 5555
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=1.4e-13 Score=161.26 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=140.0
Q ss_pred cCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCC
Q 006421 360 TRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK 438 (645)
Q Consensus 360 ~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~ 438 (645)
..|+.|+|++|.+..++. .+..+|+.|+|++|+|+.+|. + ..+|+.|+|++|.|..+|.. ++.+|+.|+|++|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~--~l~~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~ 273 (754)
T PRK15370 199 EQITTLILDNNELKSLPE--NLQGNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPER-LPSALQSLDLFHNK 273 (754)
T ss_pred cCCcEEEecCCCCCcCCh--hhccCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChh-HhCCCCEEECcCCc
Confidence 478899999998886543 334689999999999999983 4 35799999999999988654 45789999999999
Q ss_pred CCCCcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhh
Q 006421 439 INTIEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVA 517 (645)
Q Consensus 439 Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~ 517 (645)
|+.+|. +. .+|+.|+|++|+|+.+|..+. .+|+.|+|++|.|+.++.. ...+|+.|++++|.|+. +|..+
T Consensus 274 L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~---LP~~l- 344 (754)
T PRK15370 274 ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTS---LPASL- 344 (754)
T ss_pred cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCcccc---CChhh-
Confidence 998865 32 589999999999999886553 4799999999999987431 23689999999999998 45544
Q ss_pred cCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006421 518 NYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 518 ~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
.++|+.|+|++|.|.. +|.. + .++|+.|+..
T Consensus 345 -~~sL~~L~Ls~N~L~~-LP~~------l--p~~L~~LdLs 375 (754)
T PRK15370 345 -PPELQVLDVSKNQITV-LPET------L--PPTITTLDVS 375 (754)
T ss_pred -cCcccEEECCCCCCCc-CChh------h--cCCcCEEECC
Confidence 3799999999999985 6653 1 3578888764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=6.6e-16 Score=164.21 Aligned_cols=179 Identities=23% Similarity=0.276 Sum_probs=148.3
Q ss_pred CChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CC
Q 006421 351 SPARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KG 428 (645)
Q Consensus 351 ~~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~s 428 (645)
.++..++++..|..++..+|.+...+.-......+..|++.+|+++.+| ..-.++.|+.||+..|-++.+|+.... .+
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~ 207 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLES 207 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhh
Confidence 3455666777777777777766654443333345667778888888777 444588889999999999888877443 78
Q ss_pred CCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcC-cCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCC
Q 006421 429 LHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGL-SNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 429 L~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l-~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~L 506 (645)
|..|+|..|+|..+|.|.+|..|..|+++.|.|..+|... .++.+|..|+|..|+++.+ ..+.-+.+|..|||++|.|
T Consensus 208 L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred hHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 9999999999999999999999999999999999999874 4899999999999999998 5678889999999999999
Q ss_pred CCccchhHhhhcCCCCcEEEccCCCCC
Q 006421 507 TTTKALGQLVANYQSLLALNLLGNPIQ 533 (645)
Q Consensus 507 s~~~~LP~~l~~L~sL~~LdLs~N~L~ 533 (645)
++ +|..++++ .|+.|-+.||++.
T Consensus 288 s~---Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 288 SS---LPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cc---CCcccccc-eeeehhhcCCchH
Confidence 98 78899999 9999999999986
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=7.9e-16 Score=148.36 Aligned_cols=178 Identities=23% Similarity=0.294 Sum_probs=149.7
Q ss_pred hhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEe
Q 006421 356 TAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLN 433 (645)
Q Consensus 356 l~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~Ld 433 (645)
+.++..++.|.||+|.+...++-..-..+|++|++.+|+|+.+| +++.++.|+.|+++.|++.-+|.+... +.|+.||
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44566778889999988865543333378999999999999999 899999999999999999988876444 7899999
Q ss_pred cCCCCCCC--CcC-CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCc
Q 006421 434 LSRNKINT--IEG-LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 434 Ls~N~Ls~--lp~-L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~ 509 (645)
|.+|.+.+ +|+ |..+..|+.|.|++|.|.-+|..++++++|+.|.+..|.+-.+ ..++.++.|+.|.+.+|+++-
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v- 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV- 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee-
Confidence 99999985 454 8889999999999999999999999999999999999998877 568999999999999999987
Q ss_pred cchhHhhhcCC---CCcEEEccCCCCCcCC
Q 006421 510 KALGQLVANYQ---SLLALNLLGNPIQSNI 536 (645)
Q Consensus 510 ~~LP~~l~~L~---sL~~LdLs~N~L~g~i 536 (645)
+|..++++. +-+.+.+..|++...|
T Consensus 188 --lppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 188 --LPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred --cChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 677776654 2345667788886544
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=2.5e-14 Score=164.47 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCC
Q 006421 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPT 422 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~ 422 (645)
.+|++++++.|++..+| .++.+.+|+.|++.+|+|+.++.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHH
Confidence 45555666666666555 45555556666555555554443
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=3.3e-14 Score=163.44 Aligned_cols=195 Identities=25% Similarity=0.311 Sum_probs=148.2
Q ss_pred hhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-----
Q 006421 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP----- 426 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~----- 426 (645)
|..+..+.+|+.+++..|.+..+..-.....+|+.|.+..|.+..+| .+..++.|++|+|..|+|..+|...+.
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 46777777788888877777554433333366777777777777777 355588888888888888776653221
Q ss_pred ----------------------CCCCEEecCCCCCCC--CcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccC
Q 006421 427 ----------------------KGLHTLNLSRNKINT--IEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAG 481 (645)
Q Consensus 427 ----------------------~sL~~LdLs~N~Ls~--lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~ 481 (645)
..|+.|+|.+|.|++ +|.|.++.+|++|+|++|+|..+|.. +.++..|++|+|++
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc
Confidence 346778888888886 47788899999999999999999876 88999999999999
Q ss_pred CCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006421 482 NKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 482 N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
|+|+.+ ..+..+..|++|...+|+|.. +| .+..++.|+.+||+.|.|+...-.+ ...-++|+|||+
T Consensus 417 NkL~~Lp~tva~~~~L~tL~ahsN~l~~---fP-e~~~l~qL~~lDlS~N~L~~~~l~~------~~p~p~LkyLdl 483 (1081)
T KOG0618|consen 417 NKLTTLPDTVANLGRLHTLRAHSNQLLS---FP-ELAQLPQLKVLDLSCNNLSEVTLPE------ALPSPNLKYLDL 483 (1081)
T ss_pred chhhhhhHHHHhhhhhHHHhhcCCceee---ch-hhhhcCcceEEecccchhhhhhhhh------hCCCcccceeec
Confidence 999998 567888899999999999987 55 5788999999999999987532221 111278999987
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.36 E-value=3.9e-13 Score=131.69 Aligned_cols=140 Identities=36% Similarity=0.453 Sum_probs=57.3
Q ss_pred EecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCc
Q 006421 389 HIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG 467 (645)
Q Consensus 389 ~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~ 467 (645)
.|..+.|..++.+.+...+++|+|.+|.|+.|..-. ...+|+.|+|++|.|+.++++..++.|++|+|++|+|+.+...
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 355667778887788888999999999999886544 3478999999999999999999999999999999999998655
Q ss_pred C-cCCCCCcEEEccCCCCCCc---ccccCCCCCCEEECcCCCCCCccc-hhHhhhcCCCCcEEEcc
Q 006421 468 L-SNCTLIKELYLAGNKISDI---EGLHRLLKLTVLDMSFNKITTTKA-LGQLVANYQSLLALNLL 528 (645)
Q Consensus 468 l-~~L~sL~~L~Ls~N~Ls~l---~~L~~L~~L~~LdLS~N~Ls~~~~-LP~~l~~L~sL~~LdLs 528 (645)
+ ..+++|++|+|++|+|..+ ..+..+++|+.|+|.+|.++.... -...+..+|+|+.||-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 5 4689999999999999876 567889999999999999986432 12457889999998743
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=3.2e-14 Score=156.80 Aligned_cols=196 Identities=27% Similarity=0.305 Sum_probs=166.7
Q ss_pred hcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006421 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
..+..-...||+.|.+..++........|+.|.|..|.|..|| .++++..|++|||+.|+++.+|...+.--|+.|.++
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe
Confidence 4556667789999999887776666677888999999999999 799999999999999999999988877789999999
Q ss_pred CCCCCCCc-CCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchh
Q 006421 436 RNKINTIE-GLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALG 513 (645)
Q Consensus 436 ~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP 513 (645)
+|+++.+| .++.+..|..||.+.|.|..+|..++.+.+|+.|.+..|++..+ +.+. .-.|..||+++|+|+. ||
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~---iP 227 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY---LP 227 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee---cc
Confidence 99999885 58888999999999999999999999999999999999999988 4566 5579999999999998 78
Q ss_pred HhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCC
Q 006421 514 QLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPI 560 (645)
Q Consensus 514 ~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~i 560 (645)
..|.+|..|++|-|.+|+++. .|.. + ...+...=.+||+.+..
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS-PPAq-I--C~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS-PPAQ-I--CEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC-ChHH-H--Hhccceeeeeeecchhc
Confidence 999999999999999999997 4443 1 11233334567777644
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.35 E-value=4e-13 Score=138.92 Aligned_cols=210 Identities=26% Similarity=0.331 Sum_probs=161.0
Q ss_pred ChhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC-------------------------CCCCCC
Q 006421 352 PARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT-------------------------ISHFSS 406 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-------------------------L~~L~~ 406 (645)
++-.+..+.+|..+.+|.+....+..+..+.|.|.++...+..+...|. +.....
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~ 285 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQE 285 (490)
T ss_pred cccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhh
Confidence 3445666677788888877666665666666777777766555443221 223567
Q ss_pred CCEEEccCCcCCCCCCCC-CCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCC
Q 006421 407 LRSVNLSNNFIVHIPTGS-MPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~~-~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls 485 (645)
|+.|||++|.|+.|.... +.+.++.|++++|.|..+..+..+++|+.|||++|.++.+-..-.++.+++.|.|++|.|.
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence 999999999999887653 4489999999999999998899999999999999999987655557789999999999999
Q ss_pred CcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHh---cCCCCCceecccCCCh
Q 006421 486 DIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVC---SLLPKLVYLNKQPIKP 562 (645)
Q Consensus 486 ~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl---~~L~~L~~Ld~~~is~ 562 (645)
.+.++..+-+|..||+++|+|...+++ ..|++++-|+.|.|.+|++.+ ++ .|+--++ +.-.+=-.||...-..
T Consensus 366 ~LSGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~-~v--dYRTKVLa~FGERaSE~~LD~~~~~~ 441 (490)
T KOG1259|consen 366 TLSGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAG-SV--DYRTKVLARFGERASEISLDNEPGNQ 441 (490)
T ss_pred hhhhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCccc-cc--hHHHHHHHHHhhhhhheecCCCCcch
Confidence 999999999999999999999987653 668999999999999999998 44 3443333 3323333677654444
Q ss_pred hhh
Q 006421 563 QRA 565 (645)
Q Consensus 563 n~~ 565 (645)
.++
T Consensus 442 ~EL 444 (490)
T KOG1259|consen 442 QEL 444 (490)
T ss_pred hhh
Confidence 443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=3e-12 Score=133.47 Aligned_cols=82 Identities=32% Similarity=0.415 Sum_probs=37.9
Q ss_pred CCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCccc-----cccCcCcCCCCCcEEEccCCCCCCc------cc
Q 006421 427 KGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIF-----RIGHGLSNCTLIKELYLAGNKISDI------EG 489 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls-----~LP~~l~~L~sL~~L~Ls~N~Ls~l------~~ 489 (645)
++|+.|+|++|.|++. ..+..+..|++|+|++|.++ .++..+..+++|++|+|++|.+++. ..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 3455555555555521 11334445555555555554 1222233334555555555555432 12
Q ss_pred ccCCCCCCEEECcCCCCCC
Q 006421 490 LHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 490 L~~L~~L~~LdLS~N~Ls~ 508 (645)
+..+++|++|++++|.+++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 3344555555555555543
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-13 Score=147.39 Aligned_cols=218 Identities=21% Similarity=0.248 Sum_probs=172.1
Q ss_pred hhhcccCCCEEecCCccccccchhhccC---CCccEEEecCCCCCcCC-C--CCCCCCCCEEEccCCcCCCCCCC---CC
Q 006421 355 STAHLTRRSEINLSEEILHANSVIRSLN---SSSAVAHIAGIGLKAIP-T--ISHFSSLRSVNLSNNFIVHIPTG---SM 425 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~---~~L~~L~Ls~N~Lt~IP-s--L~~L~~L~~LdLs~N~Lt~ip~~---~~ 425 (645)
-...+++++.||||.|.+..+..+..+. ++|+.|+|+.|.|...- + -..++.|+.|.|+.|.|+.-... ..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 5667899999999999998776655444 89999999999987543 2 34788999999999999832111 12
Q ss_pred CCCCCEEecCCCCCCCC--cCCCCCCCCcEEEccCCccccccC--cCcCCCCCcEEEccCCCCCCc--cc------ccCC
Q 006421 426 PKGLHTLNLSRNKINTI--EGLREMTRLRVLDLSYNRIFRIGH--GLSNCTLIKELYLAGNKISDI--EG------LHRL 493 (645)
Q Consensus 426 ~~sL~~LdLs~N~Ls~l--p~L~~L~sL~~LdLS~N~Ls~LP~--~l~~L~sL~~L~Ls~N~Ls~l--~~------L~~L 493 (645)
.++|+.|+|..|....+ .....+..|+.|||++|.+-.++. ..+.++.|..|+++.|.|..+ +. ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 27999999999963333 235567889999999999987774 378999999999999999887 22 3567
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHH
Q 006421 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSI 573 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i 573 (645)
++|++|++..|+|..+..+ ..+..+.+|+.|.+..|.|... ...-+..++..++.|..||...+.+++++.+-...+
T Consensus 301 ~kL~~L~i~~N~I~~w~sl-~~l~~l~nlk~l~~~~n~ln~e--~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~ 377 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSL-NHLRTLENLKHLRITLNYLNKE--TDTAKLLVIARISQLVKLNDVDISPNERRDAELYYL 377 (505)
T ss_pred ccceeeecccCcccccccc-chhhccchhhhhhccccccccc--ccceeEEeeeehhhhhhhcccccChHHhhhhhhhHH
Confidence 8999999999999887655 3467788999999999999753 334455678889999999999999999888766666
Q ss_pred HH
Q 006421 574 AK 575 (645)
Q Consensus 574 ~k 575 (645)
.+
T Consensus 378 ~~ 379 (505)
T KOG3207|consen 378 SK 379 (505)
T ss_pred hh
Confidence 55
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.29 E-value=3.7e-11 Score=147.78 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=147.5
Q ss_pred hhhhhcccCCCEEecCCccccc--------cchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC
Q 006421 353 ARSTAHLTRRSEINLSEEILHA--------NSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS 424 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~--------~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~ 424 (645)
...+..+.+|+.|.+..+.... ...+..++..|+.|++.++.++.+|....+.+|+.|+|.+|.|..++.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccc
Confidence 4567889999999987653221 12244456789999999999999995447889999999999999887654
Q ss_pred CC-CCCCEEecCCC-CCCCCcCCCCCCCCcEEEccCCc-cccccCcCcCCCCCcEEEccCC-CCCCcccccCCCCCCEEE
Q 006421 425 MP-KGLHTLNLSRN-KINTIEGLREMTRLRVLDLSYNR-IFRIGHGLSNCTLIKELYLAGN-KISDIEGLHRLLKLTVLD 500 (645)
Q Consensus 425 ~~-~sL~~LdLs~N-~Ls~lp~L~~L~sL~~LdLS~N~-Ls~LP~~l~~L~sL~~L~Ls~N-~Ls~l~~L~~L~~L~~Ld 500 (645)
.. ++|+.|+|++| .+..+|.+..+++|+.|+|++|. +..+|..+.++++|+.|+|++| .+..++...++++|+.|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 33 89999999987 47778889999999999999874 6689988999999999999986 566665544789999999
Q ss_pred CcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006421 501 MSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 501 LS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
|++|..... +|. ...+|+.|+|++|.+.. +|.. ..+++|.+|+..
T Consensus 711 Lsgc~~L~~--~p~---~~~nL~~L~L~~n~i~~-lP~~-------~~l~~L~~L~l~ 755 (1153)
T PLN03210 711 LSGCSRLKS--FPD---ISTNISWLDLDETAIEE-FPSN-------LRLENLDELILC 755 (1153)
T ss_pred CCCCCCccc--ccc---ccCCcCeeecCCCcccc-cccc-------cccccccccccc
Confidence 999864332 443 24688999999998764 5643 134555555443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=2e-13 Score=145.30 Aligned_cols=205 Identities=26% Similarity=0.329 Sum_probs=155.2
Q ss_pred ccCCCCCCCCCChhhhhcccCCCEEecCCccccccch--hhccCCCccEEEecCCCCCcCC--CCCC-------------
Q 006421 341 IFPPSPETGKSPARSTAHLTRRSEINLSEEILHANSV--IRSLNSSSAVAHIAGIGLKAIP--TISH------------- 403 (645)
Q Consensus 341 ~~~~~~~l~~~~~~sl~~L~~L~~LdLS~n~l~~~~~--l~~L~~~L~~L~Ls~N~Lt~IP--sL~~------------- 403 (645)
+-+..+.+..+++..+..+.+|+.||||.|.++.+.+ ++.+...++.+.+++|+|+.+| .|+.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 3345677888899999999999999999999987654 3344344455556669999888 3444
Q ss_pred -----------CCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCC--------------------C---------
Q 006421 404 -----------FSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKIN--------------------T--------- 441 (645)
Q Consensus 404 -----------L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls--------------------~--------- 441 (645)
|++|..|.|..|.+..+..+.|. ..++.+.+..|.+. +
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl 231 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL 231 (498)
T ss_pred hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence 44556666666777666665554 56666666666510 0
Q ss_pred -------------------C--------------c--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCC
Q 006421 442 -------------------I--------------E--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 442 -------------------l--------------p--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls 485 (645)
+ | .|..|++|+.|+|++|.|+.|... |..+..|++|.|..|+|.
T Consensus 232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 0 1 145678899999999999988655 788889999999999998
Q ss_pred Cc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhc
Q 006421 486 DI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCS 547 (645)
Q Consensus 486 ~l--~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~ 547 (645)
.+ ..|.++..|+.|+|.+|+|+.+ -|..|..+..|..|+|-.|++.|.+-..++.+|+-+
T Consensus 312 ~v~~~~f~~ls~L~tL~L~~N~it~~--~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 312 FVSSGMFQGLSGLKTLSLYDNQITTV--APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred HHHHHhhhccccceeeeecCCeeEEE--ecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 87 3488889999999999999987 667888899999999999999998888777777643
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.27 E-value=2.7e-12 Score=133.80 Aligned_cols=205 Identities=26% Similarity=0.327 Sum_probs=146.8
Q ss_pred ChhhhhcccCCCEEecCCccccccc--hhhccC--CCccEEEecCCCCCcC-----C-CCCCC-CCCCEEEccCCcCCCC
Q 006421 352 PARSTAHLTRRSEINLSEEILHANS--VIRSLN--SSSAVAHIAGIGLKAI-----P-TISHF-SSLRSVNLSNNFIVHI 420 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~--~l~~L~--~~L~~L~Ls~N~Lt~I-----P-sL~~L-~~L~~LdLs~N~Lt~i 420 (645)
++..+.++.+|+.|+|++|.+.... .+..+. ++|+.|++++|.+... . .+..+ ++|+.|+|++|.++.-
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 4556777889999999999886322 122222 4599999999998731 1 35566 8999999999999842
Q ss_pred CCC----CCC--CCCCEEecCCCCCCCC------cCCCCCCCCcEEEccCCcccc-----ccCcCcCCCCCcEEEccCCC
Q 006421 421 PTG----SMP--KGLHTLNLSRNKINTI------EGLREMTRLRVLDLSYNRIFR-----IGHGLSNCTLIKELYLAGNK 483 (645)
Q Consensus 421 p~~----~~~--~sL~~LdLs~N~Ls~l------p~L~~L~sL~~LdLS~N~Ls~-----LP~~l~~L~sL~~L~Ls~N~ 483 (645)
... .+. .+|++|+|++|.+++. ..+..+++|+.|+|++|.|+. +...+..+++|++|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 111 111 5899999999999842 235566799999999999872 34446778999999999999
Q ss_pred CCCc--ccc-----cCCCCCCEEECcCCCCC--CccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCce
Q 006421 484 ISDI--EGL-----HRLLKLTVLDMSFNKIT--TTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVY 554 (645)
Q Consensus 484 Ls~l--~~L-----~~L~~L~~LdLS~N~Ls--~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~ 554 (645)
+++. ..+ .....|+.|++++|.|+ +...+...+..+++|++|++++|.+...- ...+.......-+.|+.
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~-~~~~~~~~~~~~~~~~~ 311 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLLAESLLEPGNELES 311 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH-HHHHHHHHhhcCCchhh
Confidence 9863 221 12479999999999998 33345667788899999999999998532 22233333322266777
Q ss_pred ecc
Q 006421 555 LNK 557 (645)
Q Consensus 555 Ld~ 557 (645)
|+.
T Consensus 312 ~~~ 314 (319)
T cd00116 312 LWV 314 (319)
T ss_pred ccc
Confidence 764
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.27 E-value=8e-11 Score=144.83 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=61.4
Q ss_pred hhhhhcccCCCEEecCCcc-ccccchhhccCCCccEEEecCCC-CCcCC-CCCCCCCCCEEEccCC-cCCCCCCCCCCCC
Q 006421 353 ARSTAHLTRRSEINLSEEI-LHANSVIRSLNSSSAVAHIAGIG-LKAIP-TISHFSSLRSVNLSNN-FIVHIPTGSMPKG 428 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~-l~~~~~l~~L~~~L~~L~Ls~N~-Lt~IP-sL~~L~~L~~LdLs~N-~Lt~ip~~~~~~s 428 (645)
+..+..+++|+.|+|+++. +..++.+. ..++|+.|+|++|. +..+| .+..+++|+.|+|++| .++.+|.....++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls-~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLS-MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccc-cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 3445667777777777653 33333222 23677777777754 55666 5677777777777764 4555655443455
Q ss_pred CCEEecCCCC-CCCCcCCCCCCCCcEEEccCCcccccc
Q 006421 429 LHTLNLSRNK-INTIEGLREMTRLRVLDLSYNRIFRIG 465 (645)
Q Consensus 429 L~~LdLs~N~-Ls~lp~L~~L~sL~~LdLS~N~Ls~LP 465 (645)
|+.|+|++|. +..++.+ ..+|+.|+|++|.|..+|
T Consensus 706 L~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCEEeCCCCCCccccccc--cCCcCeeecCCCcccccc
Confidence 6666666553 2222221 234455555555554444
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.25 E-value=4.3e-12 Score=137.68 Aligned_cols=182 Identities=25% Similarity=0.349 Sum_probs=157.4
Q ss_pred hhhhcccCCCEEecCCccccccchhhccCC-CccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCC-CCCCCC
Q 006421 354 RSTAHLTRRSEINLSEEILHANSVIRSLNS-SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGS-MPKGLH 430 (645)
Q Consensus 354 ~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~-~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~-~~~sL~ 430 (645)
..+..+..+..|++.+|.+..+........ +|+.|++++|.+..+| .+..+++|+.|++++|.++.++... ..+.|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 455556789999999999999888887774 9999999999999997 7899999999999999999998876 568999
Q ss_pred EEecCCCCCCCCcCC-CCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCC
Q 006421 431 TLNLSRNKINTIEGL-REMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 431 ~LdLs~N~Ls~lp~L-~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~ 508 (645)
.|++++|+++.++.. ..+..|++|.+++|.+..++..+.++.++..|.+.+|++..+ ..+..+.+|+.|++++|.++.
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 999999999999875 456669999999998777777788999999999999999884 668888899999999999998
Q ss_pred ccchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006421 509 TKALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 509 ~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
+. . ++.+.+|+.|++++|.+...++..
T Consensus 270 i~---~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 IS---S-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cc---c-ccccCccCEEeccCccccccchhh
Confidence 53 3 789999999999999998755543
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.14 E-value=4e-12 Score=135.55 Aligned_cols=109 Identities=26% Similarity=0.319 Sum_probs=75.1
Q ss_pred hhhccCCCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEE-ecCCCCCCCCcC--CCCCC
Q 006421 377 VIRSLNSSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTL-NLSRNKINTIEG--LREMT 449 (645)
Q Consensus 377 ~l~~L~~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~L-dLs~N~Ls~lp~--L~~L~ 449 (645)
++..+++....|.|..|+|+.|| .|..+++|+.|||++|.|+.|.+.+|. .+|..| ++++|+|+.++. |++|.
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 55677788889999999999998 699999999999999999999888876 455444 445588988753 66666
Q ss_pred CCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCC
Q 006421 450 RLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls 485 (645)
.|+.|.+.-|++..++.. |..+++|..|.|-.|.+.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 555555555555543332 444444444444444433
No 29
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.10 E-value=3.1e-12 Score=144.11 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=157.1
Q ss_pred hhhhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCC--------CCC---CCCCCCEEEccCCcCCCCC
Q 006421 353 ARSTAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIP--------TIS---HFSSLRSVNLSNNFIVHIP 421 (645)
Q Consensus 353 ~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IP--------sL~---~L~~L~~LdLs~N~Lt~ip 421 (645)
|-.+.-+..|+.|.|.+..+.....+..+...|+.|.+. |.++.+. .++ ..-.|...+.++|.+..+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence 567888889999999998887766666777777777554 3443221 222 2336888899999998665
Q ss_pred CC-CCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcccccCCCCCCEE
Q 006421 422 TG-SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIEGLHRLLKLTVL 499 (645)
Q Consensus 422 ~~-~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~L 499 (645)
.. .+.+.|+.|+|++|+++.+..+..|++|++|||++|.+..+|.. ...| .|+.|.|++|.++.+.++.++.+|+.|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhhHHhhhhhhcc
Confidence 43 34488999999999999999999999999999999999999854 2333 599999999999999999999999999
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCC-----CCceecccCCChhh
Q 006421 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLP-----KLVYLNKQPIKPQR 564 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~-----~L~~Ld~~~is~n~ 564 (645)
||++|-|.+...+- .+..+..|+.|+|.||++.|.. .+|..+...+. .=-.||+..++..+
T Consensus 260 DlsyNll~~hseL~-pLwsLs~L~~L~LeGNPl~c~p---~hRaataqYl~~~~a~~~f~LDgk~l~~~e 325 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELE-PLWSLSSLIVLWLEGNPLCCAP---WHRAATAQYLHKNSAPVKFKLDGKALGGRE 325 (1096)
T ss_pred chhHhhhhcchhhh-HHHHHHHHHHHhhcCCccccCH---HHHHHHHhHhccccCCcceEecceeccchh
Confidence 99999999876653 3567889999999999998732 45555544333 11256665554433
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=7.2e-11 Score=128.17 Aligned_cols=184 Identities=28% Similarity=0.355 Sum_probs=149.5
Q ss_pred CEEecCCccc-cccchhhccCCCccEEEecCCCCCcCCC-CCCCC-CCCEEEccCCcCCCCC-CCCCCCCCCEEecCCCC
Q 006421 363 SEINLSEEIL-HANSVIRSLNSSSAVAHIAGIGLKAIPT-ISHFS-SLRSVNLSNNFIVHIP-TGSMPKGLHTLNLSRNK 438 (645)
Q Consensus 363 ~~LdLS~n~l-~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~-~L~~LdLs~N~Lt~ip-~~~~~~sL~~LdLs~N~ 438 (645)
..+++..+.+ .....+..+ +.+..|++.+|.++.++. ...+. +|+.|++++|.+..++ +...+++|+.|++++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~-~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLEL-TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcc-cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3577777766 333333333 678999999999999995 44553 9999999999999985 44566899999999999
Q ss_pred CCCCcCCC-CCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCC-CCCcccccCCCCCCEEECcCCCCCCccchhHhh
Q 006421 439 INTIEGLR-EMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNK-ISDIEGLHRLLKLTVLDMSFNKITTTKALGQLV 516 (645)
Q Consensus 439 Ls~lp~L~-~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~-Ls~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l 516 (645)
++.++... .++.|+.|++++|++..+|..+..+..|++|.+++|. +..+..+..+.++..|.+.+|++.. ++..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~---~~~~~ 251 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED---LPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee---ccchh
Confidence 99998755 8999999999999999999877677789999999994 5555778888999999999999987 35678
Q ss_pred hcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceeccc
Q 006421 517 ANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 517 ~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~ 558 (645)
+.+++|++|++++|.++. ++. ++.+.+|+.|+..
T Consensus 252 ~~l~~l~~L~~s~n~i~~-i~~-------~~~~~~l~~L~~s 285 (394)
T COG4886 252 GNLSNLETLDLSNNQISS-ISS-------LGSLTNLRELDLS 285 (394)
T ss_pred ccccccceeccccccccc-ccc-------ccccCccCEEecc
Confidence 899999999999999975 321 4567788888764
No 31
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.04 E-value=1.7e-11 Score=134.98 Aligned_cols=174 Identities=35% Similarity=0.418 Sum_probs=125.9
Q ss_pred hcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCC-CCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006421 357 AHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPT-ISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 357 ~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPs-L~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
..+..+..+++..|.+.....-.....+|..|++.+|+|..+.. +..+++|++|+|++|.|+.+........|+.|+++
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 34455556667777666522212223677888888888888887 88888888888888888888777666778888888
Q ss_pred CCCCCCCcCCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhH
Q 006421 436 RNKINTIEGLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQ 514 (645)
Q Consensus 436 ~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~ 514 (645)
+|.|+.+..+..+..|+.+++++|++..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.+..++
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~- 227 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLN- 227 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcc-
Confidence 88888888888888888888888888877643 4677888888888888887766666666666677777777653322
Q ss_pred hhhcCC--CCcEEEccCCCCCc
Q 006421 515 LVANYQ--SLLALNLLGNPIQS 534 (645)
Q Consensus 515 ~l~~L~--sL~~LdLs~N~L~g 534 (645)
.+. .|+.+++.+|++.-
T Consensus 228 ---~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 228 ---ELVMLHLRELYLSGNRISR 246 (414)
T ss_pred ---cchhHHHHHHhcccCcccc
Confidence 222 26777777777653
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=7.9e-12 Score=138.15 Aligned_cols=162 Identities=23% Similarity=0.321 Sum_probs=141.6
Q ss_pred CccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCc
Q 006421 384 SSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNR 460 (645)
Q Consensus 384 ~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~ 460 (645)
....++|+.|++..+| .++.|..|+.|.|..|.|..|+..... ..|++|+|+.|+++.+|. ++.|+ |+.|.+++|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 3457899999999999 688889999999999999988766443 789999999999999864 66665 9999999999
Q ss_pred cccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006421 461 IFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 461 Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
++.+|..++.+..|..|+.+.|.|..+ +.++.+.+|+.|.+..|++.. +|..+. .-.|..||++.|.+.. ||.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~---lp~El~-~LpLi~lDfScNkis~-iPv~ 229 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED---LPEELC-SLPLIRLDFSCNKISY-LPVD 229 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh---CCHHHh-CCceeeeecccCceee-cchh
Confidence 999999999889999999999999988 679999999999999999988 677777 4478999999999986 8887
Q ss_pred HHHHHHhcCCCCCceecc
Q 006421 540 QLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 540 ~l~~~vl~~L~~L~~Ld~ 557 (645)
+..|..|++|.+
T Consensus 230 ------fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 230 ------FRKMRHLQVLQL 241 (722)
T ss_pred ------hhhhhhheeeee
Confidence 778889987644
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=3.6e-11 Score=124.60 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=99.1
Q ss_pred CCccEEEecCCCCCcCC-CCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCcCC-CCCCCCcEEEccCCc
Q 006421 383 SSSAVAHIAGIGLKAIP-TISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIEGL-REMTRLRVLDLSYNR 460 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp~L-~~L~sL~~LdLS~N~ 460 (645)
..|+.|||++|.|+.|. +..-++.++.|++++|.|..+....+..+|+.|||++|.++.+.++ ..+.+++.|.|+.|.
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 45677888888888877 5677788888888888888777766668888888888888877653 356677888888888
Q ss_pred cccccCcCcCCCCCcEEEccCCCCCCc---ccccCCCCCCEEECcCCCCCCc
Q 006421 461 IFRIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLKLTVLDMSFNKITTT 509 (645)
Q Consensus 461 Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~L~~L~~L~~LdLS~N~Ls~~ 509 (645)
|..+. ++.++-+|..|++++|+|..+ ..+++++.|++|.|.+|.|.++
T Consensus 364 iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 364 IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88773 677777888888888888776 5688888888888888888875
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=1.6e-10 Score=127.32 Aligned_cols=176 Identities=30% Similarity=0.343 Sum_probs=120.7
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEec
Q 006421 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNL 434 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdL 434 (645)
.+..+.+|..++|.+|.+..+.......++|++|+|++|.|+.+..+..++.|+.|++++|.|..+........|+.|++
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccC
Confidence 35667778888888888877666333346788888888888888877788888888888888887766655678888888
Q ss_pred CCCCCCCCcC--CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCC--CCEEECcCCCCCCcc
Q 006421 435 SRNKINTIEG--LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLK--LTVLDMSFNKITTTK 510 (645)
Q Consensus 435 s~N~Ls~lp~--L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~--L~~LdLS~N~Ls~~~ 510 (645)
++|.+..++. +..+.+|+.+++.+|.+..+. .+..+..+..+++..|.++.+..+..+.. |+.+++++|.+...
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~- 247 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS- 247 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc-
Confidence 8888887766 577788888888888777553 33334444455666666666554444444 66666666666652
Q ss_pred chhHhhhcCCCCcEEEccCCCCCc
Q 006421 511 ALGQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 511 ~LP~~l~~L~sL~~LdLs~N~L~g 534 (645)
+..+..+..+..|++..|.+..
T Consensus 248 --~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 248 --PEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred --cccccccccccccchhhccccc
Confidence 2334555666666666666543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.9e-10 Score=120.49 Aligned_cols=182 Identities=20% Similarity=0.195 Sum_probs=140.7
Q ss_pred ChhhhhcccCCCEEecCCccccccch--hhccCCCccEEEecCCCCCcCC----CCCCCCCCCEEEccCCcCCCCCCC--
Q 006421 352 PARSTAHLTRRSEINLSEEILHANSV--IRSLNSSSAVAHIAGIGLKAIP----TISHFSSLRSVNLSNNFIVHIPTG-- 423 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~--l~~L~~~L~~L~Ls~N~Lt~IP----sL~~L~~L~~LdLs~N~Lt~ip~~-- 423 (645)
+...-.++.+|+.+.|.+........ .....++++.|||+.|-|..+- -...|++|+.|+|+.|.+......
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 35567789999999998887776653 3444489999999999998653 256899999999999998743322
Q ss_pred -CCCCCCCEEecCCCCCCCC--c-CCCCCCCCcEEEccCCc-cccccCcCcCCCCCcEEEccCCCCCCc---ccccCCCC
Q 006421 424 -SMPKGLHTLNLSRNKINTI--E-GLREMTRLRVLDLSYNR-IFRIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLK 495 (645)
Q Consensus 424 -~~~~sL~~LdLs~N~Ls~l--p-~L~~L~sL~~LdLS~N~-Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~L~~L~~ 495 (645)
....+|+.|.|+.|.|+.- . -+..+++|+.|+|..|. +..-......+..|+.|+|++|.+-+. ...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 1237899999999999842 2 25678999999999995 321112244567899999999998776 45788999
Q ss_pred CCEEECcCCCCCCccchhHh-----hhcCCCCcEEEccCCCCCc
Q 006421 496 LTVLDMSFNKITTTKALGQL-----VANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 496 L~~LdLS~N~Ls~~~~LP~~-----l~~L~sL~~LdLs~N~L~g 534 (645)
|..|+++.|.|..+. +|+. ...+++|++|++..|++..
T Consensus 273 L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhhhccccCcchhc-CCCccchhhhcccccceeeecccCcccc
Confidence 999999999999874 3443 4578999999999999954
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.8e-09 Score=110.80 Aligned_cols=209 Identities=15% Similarity=0.215 Sum_probs=135.4
Q ss_pred ccCCCEEecCCccccccchhhccC---CCccEEEecCCCCC-cCCCC-CCCCCCCEEEccCCcCCCCCCCCCC---CCCC
Q 006421 359 LTRRSEINLSEEILHANSVIRSLN---SSSAVAHIAGIGLK-AIPTI-SHFSSLRSVNLSNNFIVHIPTGSMP---KGLH 430 (645)
Q Consensus 359 L~~L~~LdLS~n~l~~~~~l~~L~---~~L~~L~Ls~N~Lt-~IPsL-~~L~~L~~LdLs~N~Lt~ip~~~~~---~sL~ 430 (645)
...++.+||.+|.+..+..+..+. |.|++|+|+.|.|. .|..+ ..+.+|++|.|.+..+.--....+. +.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 346667777777777665554433 66777777777765 23333 3556777777777666432222222 4566
Q ss_pred EEecCCCCCCCC--c--CCCC-CCCCcEEEccCCccc---cccCcCcCCCCCcEEEccCCCCCCc---ccccCCCCCCEE
Q 006421 431 TLNLSRNKINTI--E--GLRE-MTRLRVLDLSYNRIF---RIGHGLSNCTLIKELYLAGNKISDI---EGLHRLLKLTVL 499 (645)
Q Consensus 431 ~LdLs~N~Ls~l--p--~L~~-L~sL~~LdLS~N~Ls---~LP~~l~~L~sL~~L~Ls~N~Ls~l---~~L~~L~~L~~L 499 (645)
.|.++.|.+..+ . .... -+.+.+|.+..|.+. .+-.--.-++++..+.+..|.|... .....++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 666666644322 1 0111 123444444444332 1111112346788888889988776 456677888899
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhh
Q 006421 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRAREL 568 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~ 568 (645)
+|+.|+|..+..+ ..+..++.|..|.+.+|++...+-...-+..+++.|++++.||+..|+..++...
T Consensus 230 nL~~~~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dS 297 (418)
T KOG2982|consen 230 NLGANNIDSWASV-DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDS 297 (418)
T ss_pred hhcccccccHHHH-HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhh
Confidence 9999999988655 5578999999999999999776655555566789999999999999988766443
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.72 E-value=1.4e-08 Score=107.48 Aligned_cols=202 Identities=19% Similarity=0.214 Sum_probs=130.8
Q ss_pred hhhcccCCCEEecCCcccccc-----chhhccCCCccEEEecCCCCC----cCC--------CCCCCCCCCEEEccCCcC
Q 006421 355 STAHLTRRSEINLSEEILHAN-----SVIRSLNSSSAVAHIAGIGLK----AIP--------TISHFSSLRSVNLSNNFI 417 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~-----~~l~~L~~~L~~L~Ls~N~Lt----~IP--------sL~~L~~L~~LdLs~N~L 417 (645)
.+..+..++.++|++|.+..- .....-.++|+..++++--.. .+| .+-.++.|++|+||.|-|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 444556777888888876521 111111256777777654322 333 144566888888888887
Q ss_pred CCCCCCCC------CCCCCEEecCCCCCCCC---------------cCCCCCCCCcEEEccCCcccccc-----CcCcCC
Q 006421 418 VHIPTGSM------PKGLHTLNLSRNKINTI---------------EGLREMTRLRVLDLSYNRIFRIG-----HGLSNC 471 (645)
Q Consensus 418 t~ip~~~~------~~sL~~LdLs~N~Ls~l---------------p~L~~L~sL~~LdLS~N~Ls~LP-----~~l~~L 471 (645)
..-....| +..|+.|.|.+|.|... .....-+.|++++.++|++..-+ ..|..+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 63221111 26788888888877632 11345567888888888887433 236667
Q ss_pred CCCcEEEccCCCCCCc------ccccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006421 472 TLIKELYLAGNKISDI------EGLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~l------~~L~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
+.|+.+.+..|.|..- ..+..++.|++|||..|.|+.- ..+...+..++.|+.|++++|.+...-. ..+..
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga-~a~~~ 263 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA-IAFVD 263 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH-HHHHH
Confidence 7888888888887542 4578888888888888888743 2245567778888888888888865332 34556
Q ss_pred HHhcCCCCCceecc
Q 006421 544 AVCSLLPKLVYLNK 557 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~ 557 (645)
.+....|+|+.|++
T Consensus 264 al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 264 ALKESAPSLEVLEL 277 (382)
T ss_pred HHhccCCCCceecc
Confidence 66666888888875
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=4.3e-08 Score=113.70 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=86.2
Q ss_pred CCEEecCCCCCCCC-c-CCCCCCCCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcC
Q 006421 429 LHTLNLSRNKINTI-E-GLREMTRLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSF 503 (645)
Q Consensus 429 L~~LdLs~N~Ls~l-p-~L~~L~sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~L~~L~~L~~LdLS~ 503 (645)
++.|+|++|.|.+. + .++.+++|+.|+|++|.|. .+|..++.+++|+.|+|++|.|++. ..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67888888888763 3 4888888999999999887 7887788888999999999988874 4588888999999999
Q ss_pred CCCCCccchhHhhhcC-CCCcEEEccCCCCCcCCC
Q 006421 504 NKITTTKALGQLVANY-QSLLALNLLGNPIQSNIS 537 (645)
Q Consensus 504 N~Ls~~~~LP~~l~~L-~sL~~LdLs~N~L~g~iP 537 (645)
|.|++. +|..+..+ .++..+++.+|+..|.+|
T Consensus 500 N~l~g~--iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGR--VPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred Cccccc--CChHHhhccccCceEEecCCccccCCC
Confidence 988876 77777653 467788888888776554
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=1.3e-08 Score=107.78 Aligned_cols=178 Identities=24% Similarity=0.283 Sum_probs=111.0
Q ss_pred hhhcccCCCEEecCCccccccch-----hhccCCCccEEEecCCCCCcCC---------------CCCCCCCCCEEEccC
Q 006421 355 STAHLTRRSEINLSEEILHANSV-----IRSLNSSSAVAHIAGIGLKAIP---------------TISHFSSLRSVNLSN 414 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~-----l~~L~~~L~~L~Ls~N~Lt~IP---------------sL~~L~~L~~LdLs~ 414 (645)
.+...++|+.+|||+|.+....+ +..-...|++|.|.+|+|.... .+..-+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 44445577777888776653221 2222366777777777776332 133455777777777
Q ss_pred CcCCCCCCCCC------CCCCCEEecCCCCCCC--C----cCCCCCCCCcEEEccCCccc-----cccCcCcCCCCCcEE
Q 006421 415 NFIVHIPTGSM------PKGLHTLNLSRNKINT--I----EGLREMTRLRVLDLSYNRIF-----RIGHGLSNCTLIKEL 477 (645)
Q Consensus 415 N~Lt~ip~~~~------~~sL~~LdLs~N~Ls~--l----p~L~~L~sL~~LdLS~N~Ls-----~LP~~l~~L~sL~~L 477 (645)
|++..-+.... .+.|+.+.+..|.|.. + ..|..+++|++|||.+|.|+ .+...+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 77765443321 1577777777777653 2 24667777888888888776 233346667777788
Q ss_pred EccCCCCCCc------ccc-cCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCC
Q 006421 478 YLAGNKISDI------EGL-HRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPI 532 (645)
Q Consensus 478 ~Ls~N~Ls~l------~~L-~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L 532 (645)
+++.|.+..- ..+ ...++|++|.|.+|.|+.- ..+...+...+.|..|+|++|.+
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8877777652 112 2356777788888777642 12344556677777788888877
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.56 E-value=4.6e-08 Score=97.19 Aligned_cols=141 Identities=28% Similarity=0.325 Sum_probs=88.6
Q ss_pred CCEEEccCCcCCCCCCC-CCCCCCCEEecCCCCCCCCcCCCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCC
Q 006421 407 LRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIEGLREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKIS 485 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip~~-~~~~sL~~LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls 485 (645)
=+.++|.+.++..+... ....+...+||++|.|..++.|..++.|.+|.|++|+|+.|.+.+..+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~-------------- 86 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF-------------- 86 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh--------------
Confidence 44556665555444331 222455556666666665555555566666666666666554443322
Q ss_pred CcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhh
Q 006421 486 DIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRA 565 (645)
Q Consensus 486 ~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~ 565 (645)
+++|..|.|.+|.|..+.++ .-+..|++|++|.+-+|+++. ...||..++..+|+|+.||++.|+.+++
T Consensus 87 -------~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~---k~~YR~yvl~klp~l~~LDF~kVt~~ER 155 (233)
T KOG1644|consen 87 -------LPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEH---KKNYRLYVLYKLPSLRTLDFQKVTRKER 155 (233)
T ss_pred -------ccccceEEecCcchhhhhhc-chhccCCccceeeecCCchhc---ccCceeEEEEecCcceEeehhhhhHHHH
Confidence 23455555555555443333 225778899999999999864 3478888999999999999999998888
Q ss_pred hhhhhHH
Q 006421 566 RELLTDS 572 (645)
Q Consensus 566 ~g~i~~~ 572 (645)
..+..-.
T Consensus 156 ~~A~~~f 162 (233)
T KOG1644|consen 156 EEAEVFF 162 (233)
T ss_pred HHHHHHh
Confidence 7665433
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.5e-07 Score=109.18 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=79.5
Q ss_pred CCcEEEccCCccc-cccCcCcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEE
Q 006421 450 RLRVLDLSYNRIF-RIGHGLSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALN 526 (645)
Q Consensus 450 sL~~LdLS~N~Ls-~LP~~l~~L~sL~~L~Ls~N~Ls~l--~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~Ld 526 (645)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.|++. ..+..+++|+.|+|++|.|++. +|..++.+++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~--iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS--IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC--CchHHhcCCCCCEEE
Confidence 4788999999998 7888899999999999999999864 4689999999999999999986 889999999999999
Q ss_pred ccCCCCCcCCChh
Q 006421 527 LLGNPIQSNISDD 539 (645)
Q Consensus 527 Ls~N~L~g~iP~~ 539 (645)
|++|.+.|.+|..
T Consensus 497 Ls~N~l~g~iP~~ 509 (623)
T PLN03150 497 LNGNSLSGRVPAA 509 (623)
T ss_pred CcCCcccccCChH
Confidence 9999999999876
No 42
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=9.8e-09 Score=105.99 Aligned_cols=123 Identities=28% Similarity=0.329 Sum_probs=106.9
Q ss_pred CCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEc
Q 006421 448 MTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNL 527 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdL 527 (645)
+.+.+.|++.++.|+.|. ....++.|+.|.|+-|+|+.+..|..|++|+.|+|..|.|.++.+| ..+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhh
Confidence 446677888888888773 4567889999999999999998899999999999999999998765 45789999999999
Q ss_pred cCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhhHHH
Q 006421 528 LGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLTDSI 573 (645)
Q Consensus 528 s~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~~~i 573 (645)
..|+-.|.-+. .|+..++..||+|+.||..+++.++...++.+.+
T Consensus 96 ~ENPCc~~ag~-nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~g~ 140 (388)
T KOG2123|consen 96 DENPCCGEAGQ-NYRRKVLRVLPNLKKLDNVPVTEEELEEALRDGI 140 (388)
T ss_pred ccCCcccccch-hHHHHHHHHcccchhccCccccHHHHHHHHhcCC
Confidence 99999887665 6999999999999999999999999988887666
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2.1e-07 Score=75.04 Aligned_cols=55 Identities=35% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCCcEEEccCCC
Q 006421 429 LHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNK 483 (645)
Q Consensus 429 L~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~ 483 (645)
|++|+|++|+|+.++ .|..+++|++|+|++|.|+.++.. |..+++|++|+|++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444444444332 134444444444444444444332 4444444444444443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.7e-07 Score=74.38 Aligned_cols=58 Identities=33% Similarity=0.474 Sum_probs=42.3
Q ss_pred CCCcEEEccCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCCCEEECcCCCC
Q 006421 449 TRLRVLDLSYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKLTVLDMSFNKI 506 (645)
Q Consensus 449 ~sL~~LdLS~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~L~~L~~L~~LdLS~N~L 506 (645)
++|++|+|++|+|+.+|.. |..+++|++|+|++|.|+.+ ..|..+++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677888888888877754 67777777777777777776 3467777777777777764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=5.4e-09 Score=118.52 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=99.8
Q ss_pred CCCEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCC-CCCCEEecCCCCC
Q 006421 361 RRSEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMP-KGLHTLNLSRNKI 439 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~-~sL~~LdLs~N~L 439 (645)
.|...+.++|.+.....-..+.+.++.|+|+.|+++.+..+..|+.|+.|||++|.+..+|..... ..|..|.|++|.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 456677788887766555566678889999999998888888889999999999999888765332 4589999999999
Q ss_pred CCCcCCCCCCCCcEEEccCCccccccC--cCcCCCCCcEEEccCCCCCC
Q 006421 440 NTIEGLREMTRLRVLDLSYNRIFRIGH--GLSNCTLIKELYLAGNKISD 486 (645)
Q Consensus 440 s~lp~L~~L~sL~~LdLS~N~Ls~LP~--~l~~L~sL~~L~Ls~N~Ls~ 486 (645)
+.+-++.+|.+|+.|||++|-|..... .+..+..|+.|+|.+|.|-.
T Consensus 245 ~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 245 TTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 988888889999999999998874432 25667788899999988753
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=9.7e-07 Score=87.91 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=74.2
Q ss_pred CEEecCCccccccchhhccCCCccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCC--CCCCCCEEecCCCCCC
Q 006421 363 SEINLSEEILHANSVIRSLNSSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGS--MPKGLHTLNLSRNKIN 440 (645)
Q Consensus 363 ~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~--~~~sL~~LdLs~N~Ls 440 (645)
+.++|.+..+.....+..+......++|++|.|..++.|..++.|..|.|++|.|+.|.+.. +.++|..|.|.+|.|.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 44455554444333333334556678888888888877888888888888888888777653 3366777777777776
Q ss_pred CC---cCCCCCCCCcEEEccCCccccccCc----CcCCCCCcEEEccC
Q 006421 441 TI---EGLREMTRLRVLDLSYNRIFRIGHG----LSNCTLIKELYLAG 481 (645)
Q Consensus 441 ~l---p~L~~L~sL~~LdLS~N~Ls~LP~~----l~~L~sL~~L~Ls~ 481 (645)
.+ ..+..|++|++|.+-+|.++..... +..+++|+.||+.+
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 54 3355666666666666666543321 44555555555443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=2e-06 Score=88.97 Aligned_cols=203 Identities=20% Similarity=0.219 Sum_probs=142.1
Q ss_pred hhhcccCCCEEecCCccccccc--hh---hccCCCccEEEecCCCCC----cCC--------CCCCCCCCCEEEccCCcC
Q 006421 355 STAHLTRRSEINLSEEILHANS--VI---RSLNSSSAVAHIAGIGLK----AIP--------TISHFSSLRSVNLSNNFI 417 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~--~l---~~L~~~L~~L~Ls~N~Lt----~IP--------sL~~L~~L~~LdLs~N~L 417 (645)
.+..+..|..++||+|.+..-. .+ ..-..+|++.+++.--.. .++ .+-.|+.|+.++||.|.|
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 4555788899999999876321 11 111267777777765433 222 366899999999999998
Q ss_pred CCCCCCC------CCCCCCEEecCCCCCCCCcC---------------CCCCCCCcEEEccCCccccccCc-----CcCC
Q 006421 418 VHIPTGS------MPKGLHTLNLSRNKINTIEG---------------LREMTRLRVLDLSYNRIFRIGHG-----LSNC 471 (645)
Q Consensus 418 t~ip~~~------~~~sL~~LdLs~N~Ls~lp~---------------L~~L~sL~~LdLS~N~Ls~LP~~-----l~~L 471 (645)
..-.+.. -.+.|..|.|++|.+.-+.+ ...-+.|+++++..|++...+.. +..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 7432221 12789999999998765421 23457899999999998855533 3333
Q ss_pred CCCcEEEccCCCCCC--c-----ccccCCCCCCEEECcCCCCCCc--cchhHhhhcCCCCcEEEccCCCCCcCCChhHHH
Q 006421 472 TLIKELYLAGNKISD--I-----EGLHRLLKLTVLDMSFNKITTT--KALGQLVANYQSLLALNLLGNPIQSNISDDQLR 542 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~--l-----~~L~~L~~L~~LdLS~N~Ls~~--~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~ 542 (645)
..|+.+.+..|.|.. + ..+..+.+|++|||..|-++.. ..+...+..++.|+.|.+..|-++..-....++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 589999999998864 2 3467788999999999998853 235566778888999999999988766666566
Q ss_pred HHHhcCCCCCceecc
Q 006421 543 KAVCSLLPKLVYLNK 557 (645)
Q Consensus 543 ~~vl~~L~~L~~Ld~ 557 (645)
.+--...|+|..|-+
T Consensus 265 ~f~e~~~p~l~~L~~ 279 (388)
T COG5238 265 RFNEKFVPNLMPLPG 279 (388)
T ss_pred HhhhhcCCCcccccc
Confidence 655556777776654
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.04 E-value=4.3e-06 Score=100.31 Aligned_cols=137 Identities=33% Similarity=0.462 Sum_probs=109.9
Q ss_pred CCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCC--CCCCcC--CCCCCCCcEEEccCC-ccccccCc
Q 006421 393 IGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK--INTIEG--LREMTRLRVLDLSYN-RIFRIGHG 467 (645)
Q Consensus 393 N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~--Ls~lp~--L~~L~sL~~LdLS~N-~Ls~LP~~ 467 (645)
.++..+|........+.+.+-+|.+..++...-++.|++|-+..|. +..++. |..++.|++|||++| .+..+|..
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 4556677666777888889999988887766666789999999886 565554 788999999999987 46689988
Q ss_pred CcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCC
Q 006421 468 LSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNP 531 (645)
Q Consensus 468 l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~ 531 (645)
++.+-+|++|+|++..|+.+ ..+.++..|.+|++..+.-... +|..+..+.+|++|.+..-.
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeeccc
Confidence 99999999999999999887 5688899999999988775443 45666778999999887765
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.00 E-value=3.5e-06 Score=86.66 Aligned_cols=73 Identities=30% Similarity=0.405 Sum_probs=50.8
Q ss_pred CCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecccCCChhhhhhhhh
Q 006421 494 LKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPIKPQRARELLT 570 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~is~n~~~g~i~ 570 (645)
++|++|+|++|+|..+..++. +..+.+|..|++..|..+. ...++..++..+++|++||..++..++......
T Consensus 91 P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~~~ 163 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDVDGEEAPEADA 163 (260)
T ss_pred CceeEEeecCCccccccccch-hhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhccccccccCCcccccccc
Confidence 555555555555554333322 4667778888888887766 346888899999999999999888776654443
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=5e-05 Score=83.74 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=84.6
Q ss_pred hhhcccCCCEEecCCccccccchhhccCCCccEEEecC-CCCCcCCC-CCCCCCCCEEEccCC-cCCCCCCCCCCCCCCE
Q 006421 355 STAHLTRRSEINLSEEILHANSVIRSLNSSSAVAHIAG-IGLKAIPT-ISHFSSLRSVNLSNN-FIVHIPTGSMPKGLHT 431 (645)
Q Consensus 355 sl~~L~~L~~LdLS~n~l~~~~~l~~L~~~L~~L~Ls~-N~Lt~IPs-L~~L~~L~~LdLs~N-~Lt~ip~~~~~~sL~~ 431 (645)
.+..+..++.|+++++.+..++ .++.+|+.|.+++ +.|+.+|. + .++|+.|+|++| .+..+ +.+|+.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~ 116 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRS 116 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccce
Confidence 3445677888888888766554 4667788888876 45666773 3 357888888887 55433 456888
Q ss_pred EecCCCCCCCCcCCCCCCCCcEEEccCCccc---cccCcCcCC-CCCcEEEccCCCCCCcccccCCCCCCEEECcCCC
Q 006421 432 LNLSRNKINTIEGLREMTRLRVLDLSYNRIF---RIGHGLSNC-TLIKELYLAGNKISDIEGLHRLLKLTVLDMSFNK 505 (645)
Q Consensus 432 LdLs~N~Ls~lp~L~~L~sL~~LdLS~N~Ls---~LP~~l~~L-~sL~~L~Ls~N~Ls~l~~L~~L~~L~~LdLS~N~ 505 (645)
|+|..|.+..+..+. ++|+.|.+.+++.. .+|. .+ ++|++|++++|....++. .-..+|+.|.++.|.
T Consensus 117 L~L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 117 LEIKGSATDSIKNVP--NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIEQ 188 (426)
T ss_pred EEeCCCCCcccccCc--chHhheecccccccccccccc---ccCCcccEEEecCCCcccCcc-cccccCcEEEecccc
Confidence 888777655443221 35667776543311 2221 12 478888888877654421 112578888887764
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.90 E-value=9.4e-07 Score=83.44 Aligned_cols=103 Identities=27% Similarity=0.304 Sum_probs=60.2
Q ss_pred CCCEEecCCCCCCCCc----CCCCCCCCcEEEccCCccccccCcCc-CCCCCcEEEccCCCCCCc-ccccCCCCCCEEEC
Q 006421 428 GLHTLNLSRNKINTIE----GLREMTRLRVLDLSYNRIFRIGHGLS-NCTLIKELYLAGNKISDI-EGLHRLLKLTVLDM 501 (645)
Q Consensus 428 sL~~LdLs~N~Ls~lp----~L~~L~sL~~LdLS~N~Ls~LP~~l~-~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdL 501 (645)
.+..|+|+.|+|-.++ .+.....|+..+|++|.|..+|..|. .++.++.|+|++|.|+++ ..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3455566666555432 24444556666666666666665543 334666666666666665 33666666666666
Q ss_pred cCCCCCCccchhHhhhcCCCCcEEEccCCCCC
Q 006421 502 SFNKITTTKALGQLVANYQSLLALNLLGNPIQ 533 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~ 533 (645)
++|.|.. .|..+..+.+|-.|+..+|.+.
T Consensus 108 ~~N~l~~---~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNA---EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCcccc---chHHHHHHHhHHHhcCCCCccc
Confidence 6666655 4455555666666666666554
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=7.9e-06 Score=98.11 Aligned_cols=146 Identities=26% Similarity=0.294 Sum_probs=99.9
Q ss_pred CCccEEEecCCCCCcCCCCCCCCCCCEEEccCCc--CCCCCCCCCC--CCCCEEecCCC-CCCCCcC-CCCCCCCcEEEc
Q 006421 383 SSSAVAHIAGIGLKAIPTISHFSSLRSVNLSNNF--IVHIPTGSMP--KGLHTLNLSRN-KINTIEG-LREMTRLRVLDL 456 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~--Lt~ip~~~~~--~sL~~LdLs~N-~Ls~lp~-L~~L~sL~~LdL 456 (645)
..++.+.+-+|.+..++.-..++.|+.|-+..|. +..++...|. +.|++|||++| .+..+|. ++.|-+|++|+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4556777778888777755556678888888886 5666554343 78888888877 4666764 778888888888
Q ss_pred cCCccccccCcCcCCCCCcEEEccCCCCC-Cccc-ccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEcc
Q 006421 457 SYNRIFRIGHGLSNCTLIKELYLAGNKIS-DIEG-LHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLL 528 (645)
Q Consensus 457 S~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls-~l~~-L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs 528 (645)
++..+..+|.++.++..|.+|++..+.-. .++. +..+.+|++|.|..-.......+-..+.++.+|+.|...
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888888888888888888877532 2333 444788888887665533221122334555555555443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=4.6e-07 Score=85.48 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCCEEecCCCCCCCCcC-C-CCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCC
Q 006421 428 GLHTLNLSRNKINTIEG-L-REMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFN 504 (645)
Q Consensus 428 sL~~LdLs~N~Ls~lp~-L-~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N 504 (645)
.|...+|++|.+..+|. | ...+.++.|+|.+|.|+.+|..+..++.|+.|+++.|.|... .-+..+.+|..|+..+|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 34445555555554432 2 223456667777777777776677777777777777776654 33444666777777777
Q ss_pred CCCCccchhHhhhcCCCCcEEEccCCCCCcCCChh
Q 006421 505 KITTTKALGQLVANYQSLLALNLLGNPIQSNISDD 539 (645)
Q Consensus 505 ~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~ 539 (645)
.+..++ ..+-.-..+-..++..+++.+..+..
T Consensus 134 a~~eid---~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 134 ARAEID---VDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCc---HHHhccccHHHHHhcCCcccccCccc
Confidence 766542 22222222233445677777766544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.4e-05 Score=60.99 Aligned_cols=38 Identities=45% Similarity=0.510 Sum_probs=16.5
Q ss_pred CCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc
Q 006421 450 RLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI 487 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l 487 (645)
+|++|+|++|+|+.||..+++|++|+.|+|++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444443344444444444444444433
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=8.2e-07 Score=92.79 Aligned_cols=171 Identities=22% Similarity=0.214 Sum_probs=121.0
Q ss_pred CCccEEEecCCCCCc--CC-CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCC-CCCCCc---CCCCCCCCcE
Q 006421 383 SSSAVAHIAGIGLKA--IP-TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRN-KINTIE---GLREMTRLRV 453 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~--IP-sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N-~Ls~lp---~L~~L~sL~~ 453 (645)
..|++|||+...|+. +. -+..|..|+.|.|.++.+.+-....+. .+|+.|+|+.+ .|+... -+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 568889999888873 32 467889999999999999752222222 78999999987 466532 2778999999
Q ss_pred EEccCCccc-cc-cCcCcCC-CCCcEEEccCCC----CCCccc-ccCCCCCCEEECcCCC-CCCccchhHhhhcCCCCcE
Q 006421 454 LDLSYNRIF-RI-GHGLSNC-TLIKELYLAGNK----ISDIEG-LHRLLKLTVLDMSFNK-ITTTKALGQLVANYQSLLA 524 (645)
Q Consensus 454 LdLS~N~Ls-~L-P~~l~~L-~sL~~L~Ls~N~----Ls~l~~-L~~L~~L~~LdLS~N~-Ls~~~~LP~~l~~L~sL~~ 524 (645)
|+|+++.+. .. ...+... .+|+.|+|+++. .+++.. ...+++|.+|||+.|. |+. .+...|-.++.|++
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQH 342 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchhee
Confidence 999999876 22 1112222 478899999873 233333 4678999999999876 444 35677889999999
Q ss_pred EEccCCCCCcCCChhHHHHHHhcCCCCCceecccCC
Q 006421 525 LNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNKQPI 560 (645)
Q Consensus 525 LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~~~i 560 (645)
|.|+.|-. |+.+.+ ..+...|.|.|||...+
T Consensus 343 lSlsRCY~---i~p~~~--~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYD---IIPETL--LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcC---CChHHe--eeeccCcceEEEEeccc
Confidence 99998865 333322 12567899999997543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00027 Score=78.00 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=60.1
Q ss_pred CCCEEecCCc-cccccchhhccCCCccEEEecCC-CCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCC
Q 006421 361 RRSEINLSEE-ILHANSVIRSLNSSSAVAHIAGI-GLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNK 438 (645)
Q Consensus 361 ~L~~LdLS~n-~l~~~~~l~~L~~~L~~L~Ls~N-~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~ 438 (645)
+|+.|.++++ .+... +..++.+|+.|+|++| .|..+| ..|+.|+|..|.+..+ ..++.+|+.|.+.+++
T Consensus 73 sLtsL~Lsnc~nLtsL--P~~LP~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~L--~~LPssLk~L~I~~~n 143 (426)
T PRK15386 73 ELTEITIENCNNLTTL--PGSIPEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATDSI--KNVPNGLTSLSINSYN 143 (426)
T ss_pred CCcEEEccCCCCcccC--CchhhhhhhheEccCcccccccc-----cccceEEeCCCCCccc--ccCcchHhheeccccc
Confidence 4666777642 33221 1234466777777776 555555 2466666666655443 2345567777764432
Q ss_pred CCCCcCCC-CC-CCCcEEEccCCccccccCcCcCCCCCcEEEccCCC
Q 006421 439 INTIEGLR-EM-TRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNK 483 (645)
Q Consensus 439 Ls~lp~L~-~L-~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~ 483 (645)
......+. .+ ++|++|++++|....+|..+. .+|+.|.++.|.
T Consensus 144 ~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 144 PENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 11111111 12 467777777776655554433 467777776654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=5.3e-05 Score=57.79 Aligned_cols=39 Identities=38% Similarity=0.536 Sum_probs=32.4
Q ss_pred CCCCEEecCCCCCCCCcC-CCCCCCCcEEEccCCcccccc
Q 006421 427 KGLHTLNLSRNKINTIEG-LREMTRLRVLDLSYNRIFRIG 465 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~lp~-L~~L~sL~~LdLS~N~Ls~LP 465 (645)
++|++|+|++|+|+.++. +..|++|++|+|++|.|+.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 468899999999998877 999999999999999998775
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=3.1e-05 Score=81.21 Aligned_cols=177 Identities=17% Similarity=0.149 Sum_probs=119.9
Q ss_pred ChhhhhcccCCCEEecCCccccccchhhccC-CCccEEEecCCCCC--cCC-CCCCCCCCCEEEccCCcCCCCCCCC---
Q 006421 352 PARSTAHLTRRSEINLSEEILHANSVIRSLN-SSSAVAHIAGIGLK--AIP-TISHFSSLRSVNLSNNFIVHIPTGS--- 424 (645)
Q Consensus 352 ~~~sl~~L~~L~~LdLS~n~l~~~~~l~~L~-~~L~~L~Ls~N~Lt--~IP-sL~~L~~L~~LdLs~N~Lt~ip~~~--- 424 (645)
+...+.+|+.|+.|+|+.|.+.....-..++ .+|++|.|.+..|. ... .+..++.++.|+++.|++..+-...
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI 168 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc
Confidence 3456788999999999999998643332233 78999999998876 333 4778899999999999765432221
Q ss_pred --CCCCCCEEecCCCCCCCCc---CC-CCCCCCcEEEccCCcccccc--CcCcCCCCCcEEEccCCCCCCc---ccccCC
Q 006421 425 --MPKGLHTLNLSRNKINTIE---GL-REMTRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGNKISDI---EGLHRL 493 (645)
Q Consensus 425 --~~~sL~~LdLs~N~Ls~lp---~L-~~L~sL~~LdLS~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l---~~L~~L 493 (645)
..+.+.+|.+..|...... .+ ..++++..+.+..|.|.+.. .....++.+..|+|+.|+|... ..+..+
T Consensus 169 e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f 248 (418)
T KOG2982|consen 169 EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGF 248 (418)
T ss_pred cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCC
Confidence 1245666666666443221 11 23467777888888776443 2355667777888998888775 567788
Q ss_pred CCCCEEECcCCCCCCcc----chhHhhhcCCCCcEEEcc
Q 006421 494 LKLTVLDMSFNKITTTK----ALGQLVANYQSLLALNLL 528 (645)
Q Consensus 494 ~~L~~LdLS~N~Ls~~~----~LP~~l~~L~sL~~LdLs 528 (645)
+.|..|.+++|.|...- ..--.++.+++++.|+=+
T Consensus 249 ~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 249 PQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred chhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 88888888888876530 111246778888887633
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.31 E-value=0.00027 Score=83.17 Aligned_cols=128 Identities=20% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCCEEecCCCCCCC--Cc-CC-CCCCCCcEEEccCCccc--cccCcCcCCCCCcEEEccCCCCCCcccccCCCCCCEEE
Q 006421 427 KGLHTLNLSRNKINT--IE-GL-REMTRLRVLDLSYNRIF--RIGHGLSNCTLIKELYLAGNKISDIEGLHRLLKLTVLD 500 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~--lp-~L-~~L~sL~~LdLS~N~Ls--~LP~~l~~L~sL~~L~Ls~N~Ls~l~~L~~L~~L~~Ld 500 (645)
.+|+.|++++...-. .+ .+ ..||.|+.|.+++=.+. ++-....++++|..||+++.+++.+.+++.+++|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 456666666643321 11 12 23566666666665554 22223445666777777777766666666666777666
Q ss_pred CcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHH--HhcCCCCCceecc
Q 006421 501 MSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKA--VCSLLPKLVYLNK 557 (645)
Q Consensus 501 LS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~--vl~~L~~L~~Ld~ 557 (645)
+.+=.+.....+- .+-+|++|+.||+|........ ...... ....||+|+.||.
T Consensus 202 mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 202 MRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred ccCCCCCchhhHH-HHhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEec
Confidence 6665555433332 2446677777777765544321 011111 1223666666665
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=5.5e-05 Score=78.58 Aligned_cols=129 Identities=19% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCCEEecCCCCCCCCc------CCCCCCCCcEEEccCCccc--ccc----CcCcCCCCCcEEEccCCCCCCc------c
Q 006421 427 KGLHTLNLSRNKINTIE------GLREMTRLRVLDLSYNRIF--RIG----HGLSNCTLIKELYLAGNKISDI------E 488 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls~lp------~L~~L~sL~~LdLS~N~Ls--~LP----~~l~~L~sL~~L~Ls~N~Ls~l------~ 488 (645)
+.|++++...|++..-+ .|..-..|+++.+..|.|. .+. ..+..+.+|+.|+|..|-++.. .
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 34555555555554321 1222234555555555544 111 1133445555555555555432 1
Q ss_pred cccCCCCCCEEECcCCCCCCcc--chhHhh--hcCCCCcEEEccCCCCCcCCC-hhHHHHHHhcCCCCCcee
Q 006421 489 GLHRLLKLTVLDMSFNKITTTK--ALGQLV--ANYQSLLALNLLGNPIQSNIS-DDQLRKAVCSLLPKLVYL 555 (645)
Q Consensus 489 ~L~~L~~L~~LdLS~N~Ls~~~--~LP~~l--~~L~sL~~LdLs~N~L~g~iP-~~~l~~~vl~~L~~L~~L 555 (645)
.+...+.|+.|.+..|.++.-. .+-..+ ...++|..|-+.+|.+.+.+- ...+..+.-..+|-|..|
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred HhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 2334444555555555554321 111111 123455555555555443221 112333334445554433
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.10 E-value=0.00037 Score=82.07 Aligned_cols=126 Identities=24% Similarity=0.253 Sum_probs=63.0
Q ss_pred CCccEEEecCCCCC--cCC-CC-CCCCCCCEEEccCCcCCCCCCCCC---CCCCCEEecCCCCCCCCcCCCCCCCCcEEE
Q 006421 383 SSSAVAHIAGIGLK--AIP-TI-SHFSSLRSVNLSNNFIVHIPTGSM---PKGLHTLNLSRNKINTIEGLREMTRLRVLD 455 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt--~IP-sL-~~L~~L~~LdLs~N~Lt~ip~~~~---~~sL~~LdLs~N~Ls~lp~L~~L~sL~~Ld 455 (645)
.+|++|++++...- .-| .+ ..||.|+.|.+.+-.+..-.-..+ .++|..||+++..++.+.+++.|++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 45555666554322 111 12 245666666666544432110001 146666666666666665566666666666
Q ss_pred ccCCcccccc--CcCcCCCCCcEEEccCCCCCCc--------ccccCCCCCCEEECcCCCCCC
Q 006421 456 LSYNRIFRIG--HGLSNCTLIKELYLAGNKISDI--------EGLHRLLKLTVLDMSFNKITT 508 (645)
Q Consensus 456 LS~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l--------~~L~~L~~L~~LdLS~N~Ls~ 508 (645)
+.+=.|..-. ..+.+|++|+.||+|....... +.-..+++|+.||.|++.+..
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 5554444221 1355666666666665543321 122335666666666665554
No 62
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=4.6e-05 Score=79.98 Aligned_cols=186 Identities=22% Similarity=0.205 Sum_probs=110.9
Q ss_pred CCCEEecCCccccccchhhccC--CCccEEEecCCCCCc-CC-CCCCCCCCCEEEccCC-cCCCCCCCCC---CCCCCEE
Q 006421 361 RRSEINLSEEILHANSVIRSLN--SSSAVAHIAGIGLKA-IP-TISHFSSLRSVNLSNN-FIVHIPTGSM---PKGLHTL 432 (645)
Q Consensus 361 ~L~~LdLS~n~l~~~~~l~~L~--~~L~~L~Ls~N~Lt~-IP-sL~~L~~L~~LdLs~N-~Lt~ip~~~~---~~sL~~L 432 (645)
.|+.+|||...++.......+. ..|+.|.|.+++|.+ |- .+..-.+|+.|+|+.+ .|+....... ++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677788877766443322222 567777777777763 32 5667778888888874 4554322211 2677788
Q ss_pred ecCCCCCCCC--c-CCC-CCCCCcEEEccCCcc----ccccCcCcCCCCCcEEEccCCC-CCCc--ccccCCCCCCEEEC
Q 006421 433 NLSRNKINTI--E-GLR-EMTRLRVLDLSYNRI----FRIGHGLSNCTLIKELYLAGNK-ISDI--EGLHRLLKLTVLDM 501 (645)
Q Consensus 433 dLs~N~Ls~l--p-~L~-~L~sL~~LdLS~N~L----s~LP~~l~~L~sL~~L~Ls~N~-Ls~l--~~L~~L~~L~~LdL 501 (645)
+|+.|.+... . .+. --.+|+.|+|++.+- +.+.--...+++|.+|+|+.|. |+.- ..|..++.|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8888776531 1 111 124677778876631 1332224578888888888874 3331 45777888888888
Q ss_pred cCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCc
Q 006421 502 SFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLV 553 (645)
Q Consensus 502 S~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~ 553 (645)
+.|....... --.+...++|.+|++.++ +|+.. .+.+...+++|+
T Consensus 346 sRCY~i~p~~-~~~l~s~psl~yLdv~g~-----vsdt~-mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYDIIPET-LLELNSKPSLVYLDVFGC-----VSDTT-MELLKEMLSHLK 390 (419)
T ss_pred hhhcCCChHH-eeeeccCcceEEEEeccc-----cCchH-HHHHHHhCcccc
Confidence 8886543211 123567788999988765 33322 223344566665
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0026 Score=57.66 Aligned_cols=115 Identities=23% Similarity=0.417 Sum_probs=48.1
Q ss_pred CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEccCCccccccCc-CcCCCCC
Q 006421 400 TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDLSYNRIFRIGHG-LSNCTLI 474 (645)
Q Consensus 400 sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdLS~N~Ls~LP~~-l~~L~sL 474 (645)
.|..+.+|+.+.+.. .+..|....|. .+|+.+.+..+ +..++ .|..+.+|+.+.+.+ .+..++.. |..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355666666666663 45566555554 46666666654 55443 255665666666654 44444433 4556666
Q ss_pred cEEEccCCCCCCc--ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCC
Q 006421 475 KELYLAGNKISDI--EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSL 522 (645)
Q Consensus 475 ~~L~Ls~N~Ls~l--~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL 522 (645)
+.+.+..+ +..+ ..+..+ +|+.+.+.. .+..+.. ..+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~--~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE--NAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS------GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC--ccccccccC
Confidence 66666554 4444 335554 666666554 3333322 344555444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=4.4e-05 Score=79.54 Aligned_cols=77 Identities=26% Similarity=0.272 Sum_probs=50.8
Q ss_pred ccEEEecCCCCCcCCCCCCCCCCCEEEccCCcCCCCCCCCCCCCCCEEecCCCCCCCCc---CCCCCCCCcEEEccCCcc
Q 006421 385 SAVAHIAGIGLKAIPTISHFSSLRSVNLSNNFIVHIPTGSMPKGLHTLNLSRNKINTIE---GLREMTRLRVLDLSYNRI 461 (645)
Q Consensus 385 L~~L~Ls~N~Lt~IPsL~~L~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs~N~Ls~lp---~L~~L~sL~~LdLS~N~L 461 (645)
.+-|++.+|+|.+|.-...|+.|++|.|+-|.|+.+.+..-++.|+.|+|..|.|..+. .+.++++|+.|.|..|--
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 44566777777766655666777777777777776666555666777777777766653 355666777777766643
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00068 Score=70.11 Aligned_cols=52 Identities=29% Similarity=0.354 Sum_probs=23.8
Q ss_pred CCCcEEEccCCcccccc--CcCcCCCCCcEEEccCCCCCCc-----ccccCCCCCCEEE
Q 006421 449 TRLRVLDLSYNRIFRIG--HGLSNCTLIKELYLAGNKISDI-----EGLHRLLKLTVLD 500 (645)
Q Consensus 449 ~sL~~LdLS~N~Ls~LP--~~l~~L~sL~~L~Ls~N~Ls~l-----~~L~~L~~L~~Ld 500 (645)
++|++|+|+.|+|..+. ..+..+.+|..|++.+|..+.+ ..|.-+++|++||
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 55555555555544211 1133444555555555554443 1244445555443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.30 E-value=0.015 Score=52.64 Aligned_cols=108 Identities=28% Similarity=0.495 Sum_probs=59.7
Q ss_pred CCccEEEecCCCCCcCC--CCCCCCCCCEEEccCCcCCCCCCCCCC--CCCCEEecCCCCCCCCc--CCCCCCCCcEEEc
Q 006421 383 SSSAVAHIAGIGLKAIP--TISHFSSLRSVNLSNNFIVHIPTGSMP--KGLHTLNLSRNKINTIE--GLREMTRLRVLDL 456 (645)
Q Consensus 383 ~~L~~L~Ls~N~Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~~~~--~sL~~LdLs~N~Ls~lp--~L~~L~sL~~LdL 456 (645)
..|+.+.+.. .++.|+ .|..+..|+.+.+..+ +..++...|. .+|+.+.+.+ .+..++ .|..+.+|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3566777764 566676 5778888999998875 8877777665 5788898865 554443 4777889999999
Q ss_pred cCCccccccCc-CcCCCCCcEEEccCCCCCCc--ccccCCCCC
Q 006421 457 SYNRIFRIGHG-LSNCTLIKELYLAGNKISDI--EGLHRLLKL 496 (645)
Q Consensus 457 S~N~Ls~LP~~-l~~L~sL~~L~Ls~N~Ls~l--~~L~~L~~L 496 (645)
..+ +..++.. +.++ .|+.+.+.. .+..+ ..|.++++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 776 7777655 6665 889888876 44444 346666555
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.87 E-value=0.0011 Score=74.83 Aligned_cols=87 Identities=32% Similarity=0.455 Sum_probs=43.6
Q ss_pred CCCCcEEEccCCcccc-----ccCcCcCCCC-CcEEEccCCCCCCc------ccccCC-CCCCEEECcCCCCCCc--cch
Q 006421 448 MTRLRVLDLSYNRIFR-----IGHGLSNCTL-IKELYLAGNKISDI------EGLHRL-LKLTVLDMSFNKITTT--KAL 512 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~-----LP~~l~~L~s-L~~L~Ls~N~Ls~l------~~L~~L-~~L~~LdLS~N~Ls~~--~~L 512 (645)
..++++|.|++|.++. +-..+...+. +..|++..|.+.+. +.+..+ ..+++++++.|.|+.. ..+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4455556666555541 1111333333 44566666665532 223333 4556666666666532 234
Q ss_pred hHhhhcCCCCcEEEccCCCCCc
Q 006421 513 GQLVANYQSLLALNLLGNPIQS 534 (645)
Q Consensus 513 P~~l~~L~sL~~LdLs~N~L~g 534 (645)
...+..+..+++|.+..|++..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 4455555566666666666543
No 68
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.69 E-value=0.048 Score=61.88 Aligned_cols=91 Identities=33% Similarity=0.473 Sum_probs=63.4
Q ss_pred CCCCCcEEEccCCCCCCccccc----CCCCCCEEECcCC--CCCCccchhHhhhcCCCCcEEEccCCCCCcCCCh-hHHH
Q 006421 470 NCTLIKELYLAGNKISDIEGLH----RLLKLTVLDMSFN--KITTTKALGQLVANYQSLLALNLLGNPIQSNISD-DQLR 542 (645)
Q Consensus 470 ~L~sL~~L~Ls~N~Ls~l~~L~----~L~~L~~LdLS~N--~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~-~~l~ 542 (645)
+.+.+..|+|++|+|..+..+. ..++|..|+|++| .+....+++. -....|++|-|.||++....-. ..+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccchhhhHHHH
Confidence 5567777888888887764332 3468889999998 5555433322 1335678999999999765432 2355
Q ss_pred HHHhcCCCCCceecccCCCh
Q 006421 543 KAVCSLLPKLVYLNKQPIKP 562 (645)
Q Consensus 543 ~~vl~~L~~L~~Ld~~~is~ 562 (645)
..+...+|+|..||+..+.+
T Consensus 294 ~~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred HHHHHhcchheeecCcccCc
Confidence 56777899999999987766
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.69 E-value=0.039 Score=35.77 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=16.2
Q ss_pred CCcEEEccCCccccccCcCcC
Q 006421 450 RLRVLDLSYNRIFRIGHGLSN 470 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~~l~~ 470 (645)
+|++|+|++|+|+.||..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888876654
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.33 E-value=0.0016 Score=73.61 Aligned_cols=171 Identities=23% Similarity=0.210 Sum_probs=117.6
Q ss_pred ccEEEecCCCCCcCC------CCCCCCCCCEEEccCCcCCCCCCCC------CC-CCCCEEecCCCCCCCC------cCC
Q 006421 385 SAVAHIAGIGLKAIP------TISHFSSLRSVNLSNNFIVHIPTGS------MP-KGLHTLNLSRNKINTI------EGL 445 (645)
Q Consensus 385 L~~L~Ls~N~Lt~IP------sL~~L~~L~~LdLs~N~Lt~ip~~~------~~-~sL~~LdLs~N~Ls~l------p~L 445 (645)
+..|.|.+|.+..-. .+..+..|..|+|++|.+....... .+ ..|++|++..|.++.. ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 556777777776433 3667788888999999887322111 11 4577889999988864 236
Q ss_pred CCCCCCcEEEccCCccc-----cccCcCc----CCCCCcEEEccCCCCCCc------ccccCCCC-CCEEECcCCCCCCc
Q 006421 446 REMTRLRVLDLSYNRIF-----RIGHGLS----NCTLIKELYLAGNKISDI------EGLHRLLK-LTVLDMSFNKITTT 509 (645)
Q Consensus 446 ~~L~sL~~LdLS~N~Ls-----~LP~~l~----~L~sL~~L~Ls~N~Ls~l------~~L~~L~~-L~~LdLS~N~Ls~~ 509 (645)
.....|+.|+++.|.+. .++..+. ...++++|.|.+|.++.. ..+...+. +..|++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66888999999999884 2333344 467899999999998864 23555555 77799999999843
Q ss_pred --cchhHhhhcC-CCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006421 510 --KALGQLVANY-QSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 510 --~~LP~~l~~L-~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
..+...+..+ ..++.+++..|.|+..-... +.+ ++..++.++.|..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~-L~~-~l~~~~~l~~l~l 297 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD-LAE-VLVSCRQLEELSL 297 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHH-HHH-HHhhhHHHHHhhc
Confidence 3455556666 78899999999998644332 322 3344556666554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.99 E-value=0.0053 Score=63.00 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=49.8
Q ss_pred CCCCCCCcEEEccCCccccccCcCcCCCCCcEEEccCCCCCCc-ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCc
Q 006421 445 LREMTRLRVLDLSYNRIFRIGHGLSNCTLIKELYLAGNKISDI-EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLL 523 (645)
Q Consensus 445 L~~L~sL~~LdLS~N~Ls~LP~~l~~L~sL~~L~Ls~N~Ls~l-~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~ 523 (645)
+......+.||++.|++..+...+..++.|..|+++.|.+..+ ..++.+..+..+++..|.++. +|..++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~---~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ---QPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh---CCccccccCCcc
Confidence 3444555566666666655555555556666666666665554 345555555666666666655 455566666666
Q ss_pred EEEccCCCC
Q 006421 524 ALNLLGNPI 532 (645)
Q Consensus 524 ~LdLs~N~L 532 (645)
++++.+|+|
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 666666665
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.52 E-value=0.0072 Score=62.06 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=51.6
Q ss_pred CCcCC--CCCCCCCCCEEEccCCcCCCCCCC-CCCCCCCEEecCCCCCCCCc-CCCCCCCCcEEEccCCccccccCcCcC
Q 006421 395 LKAIP--TISHFSSLRSVNLSNNFIVHIPTG-SMPKGLHTLNLSRNKINTIE-GLREMTRLRVLDLSYNRIFRIGHGLSN 470 (645)
Q Consensus 395 Lt~IP--sL~~L~~L~~LdLs~N~Lt~ip~~-~~~~sL~~LdLs~N~Ls~lp-~L~~L~sL~~LdLS~N~Ls~LP~~l~~ 470 (645)
+..|| .+..+...+.||++.|++..+... ...+.|..|+++.|+|..+| +++.+..+..+++..|.++.+|.+++.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 34555 455666667777777666543322 11245556666666665554 355555556666666666666666666
Q ss_pred CCCCcEEEccCCCC
Q 006421 471 CTLIKELYLAGNKI 484 (645)
Q Consensus 471 L~sL~~L~Ls~N~L 484 (645)
++.++++++-+|.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 66666666666554
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.81 E-value=0.26 Score=30.09 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=6.3
Q ss_pred CCcEEEccCCcccccc
Q 006421 450 RLRVLDLSYNRIFRIG 465 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP 465 (645)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=86.78 E-value=0.27 Score=31.79 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=7.0
Q ss_pred CCEEEccCCcCCCCC
Q 006421 407 LRSVNLSNNFIVHIP 421 (645)
Q Consensus 407 L~~LdLs~N~Lt~ip 421 (645)
|++|+|++|+|+.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 444444444444443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.56 E-value=0.54 Score=28.70 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=3.7
Q ss_pred CCEEEccCCcCC
Q 006421 407 LRSVNLSNNFIV 418 (645)
Q Consensus 407 L~~LdLs~N~Lt 418 (645)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.37 E-value=0.58 Score=31.15 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=14.6
Q ss_pred CCCCCEEEccCCcCCCCCCCCC
Q 006421 404 FSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 404 L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
|++|+.|+|++|.|+.+|...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777777766544
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.37 E-value=0.58 Score=31.15 Aligned_cols=22 Identities=36% Similarity=0.739 Sum_probs=14.6
Q ss_pred CCCCCEEEccCCcCCCCCCCCC
Q 006421 404 FSSLRSVNLSNNFIVHIPTGSM 425 (645)
Q Consensus 404 L~~L~~LdLs~N~Lt~ip~~~~ 425 (645)
|++|+.|+|++|.|+.+|...|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3566777777777777766544
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.41 E-value=0.27 Score=54.07 Aligned_cols=79 Identities=28% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCCCcEEEccCCc-cccc--cCcCcCCCCCcEEEccCCC-CCCc---ccccCCCCCCEEECcCCCCCCccchhHhhhcCC
Q 006421 448 MTRLRVLDLSYNR-IFRI--GHGLSNCTLIKELYLAGNK-ISDI---EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQ 520 (645)
Q Consensus 448 L~sL~~LdLS~N~-Ls~L--P~~l~~L~sL~~L~Ls~N~-Ls~l---~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~ 520 (645)
+.+|+.|+++++. ++.. ......+++|+.|.+.++. +++. .....+++|++|+|+.+....-..+.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4555555555554 3321 1111225566666655554 4332 223445556666666555432222333344455
Q ss_pred CCcEEE
Q 006421 521 SLLALN 526 (645)
Q Consensus 521 sL~~Ld 526 (645)
+|+.|.
T Consensus 322 ~l~~l~ 327 (482)
T KOG1947|consen 322 NLRELK 327 (482)
T ss_pred chhhhh
Confidence 544444
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.37 E-value=0.72 Score=50.68 Aligned_cols=126 Identities=30% Similarity=0.255 Sum_probs=79.9
Q ss_pred CCCCEEecCCC-CCCC--C-cCCCCCCCCcEEEccCC--ccccc----cCcCcCCCCCcEEEccCCC-CCCc--cccc-C
Q 006421 427 KGLHTLNLSRN-KINT--I-EGLREMTRLRVLDLSYN--RIFRI----GHGLSNCTLIKELYLAGNK-ISDI--EGLH-R 492 (645)
Q Consensus 427 ~sL~~LdLs~N-~Ls~--l-p~L~~L~sL~~LdLS~N--~Ls~L----P~~l~~L~sL~~L~Ls~N~-Ls~l--~~L~-~ 492 (645)
+.|+.|.+..+ .++. + +....++.|+.|+++++ .+... ......+.+|+.|+|+.+. +++. ..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 45566665555 3333 2 23455677777777763 22211 1234566899999999998 6664 3333 3
Q ss_pred CCCCCEEECcCCC-CCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcCCCCCceecc
Q 006421 493 LLKLTVLDMSFNK-ITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSLLPKLVYLNK 557 (645)
Q Consensus 493 L~~L~~LdLS~N~-Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~L~~L~~Ld~ 557 (645)
+++|+.|.+.++. +++. .+-.....++.|+.|+|+++... .+..+... ...+++|+.|..
T Consensus 268 c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~---~d~~l~~~-~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGL---TDSGLEAL-LKNCPNLRELKL 328 (482)
T ss_pred CCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccc---hHHHHHHH-HHhCcchhhhhh
Confidence 8899999988887 5653 46666788999999999988764 23334444 444776665543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.35 E-value=1.2 Score=29.61 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=13.9
Q ss_pred CCCCcEEEccCCccccccCc
Q 006421 448 MTRLRVLDLSYNRIFRIGHG 467 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~LP~~ 467 (645)
+++|+.|+|++|+|+.||..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.35 E-value=1.2 Score=29.61 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=13.9
Q ss_pred CCCCcEEEccCCccccccCc
Q 006421 448 MTRLRVLDLSYNRIFRIGHG 467 (645)
Q Consensus 448 L~sL~~LdLS~N~Ls~LP~~ 467 (645)
+++|+.|+|++|+|+.||..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.81 E-value=3.6 Score=55.04 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=35.3
Q ss_pred ECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHHHHhcC
Q 006421 500 DMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRKAVCSL 548 (645)
Q Consensus 500 dLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~vl~~ 548 (645)
||++|+|+.++. ..|..+.+|+.|+|++|+|.|.|....|+.|+...
T Consensus 1 DLSnN~LstLp~--g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 1 DISNNKISTIEE--GICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred CCCCCcCCccCh--HHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 577888887643 66777888888888888888888777676665443
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.17 E-value=3.6 Score=41.89 Aligned_cols=78 Identities=31% Similarity=0.299 Sum_probs=36.0
Q ss_pred CCcEEEccCCcccccc-CcCcCCCCCcEEEccCCCCCC---ccccc-CCCCCCEEECcCCC-CCCccchhHhhhcCCCCc
Q 006421 450 RLRVLDLSYNRIFRIG-HGLSNCTLIKELYLAGNKISD---IEGLH-RLLKLTVLDMSFNK-ITTTKALGQLVANYQSLL 523 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP-~~l~~L~sL~~L~Ls~N~Ls~---l~~L~-~L~~L~~LdLS~N~-Ls~~~~LP~~l~~L~sL~ 523 (645)
.++.+|.++..|.... ..+.+++.|+.|.+.++.--+ +..++ -.++|+.|+|++|. ||... + ..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L-~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-L-ACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-H-HHHHHhhhhH
Confidence 3566666666665322 125555556666655553211 11111 12455555555443 33321 1 3344555555
Q ss_pred EEEccC
Q 006421 524 ALNLLG 529 (645)
Q Consensus 524 ~LdLs~ 529 (645)
.|.|.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555444
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.47 E-value=1.2 Score=45.23 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=52.6
Q ss_pred CCCCEEecCCCCCC--CCcCCCCCCCCcEEEccCCc-cc--cccCcCc-CCCCCcEEEccCC-CCCCc--ccccCCCCCC
Q 006421 427 KGLHTLNLSRNKIN--TIEGLREMTRLRVLDLSYNR-IF--RIGHGLS-NCTLIKELYLAGN-KISDI--EGLHRLLKLT 497 (645)
Q Consensus 427 ~sL~~LdLs~N~Ls--~lp~L~~L~sL~~LdLS~N~-Ls--~LP~~l~-~L~sL~~L~Ls~N-~Ls~l--~~L~~L~~L~ 497 (645)
..++.+|.++..|. ++..+..++.|+.|.+.++. +. .|. .++ -.++|+.|+|++| +||+- ..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 45777888888776 45678888888888888774 32 121 122 3468999999988 56653 5677778888
Q ss_pred EEECcC
Q 006421 498 VLDMSF 503 (645)
Q Consensus 498 ~LdLS~ 503 (645)
.|.|.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 877655
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.59 E-value=3.2 Score=47.61 Aligned_cols=59 Identities=32% Similarity=0.354 Sum_probs=26.7
Q ss_pred CCcEEEccCCccccccC---cCcCCCCCcEEEccCC--CCCCcccccCC--CCCCEEECcCCCCCC
Q 006421 450 RLRVLDLSYNRIFRIGH---GLSNCTLIKELYLAGN--KISDIEGLHRL--LKLTVLDMSFNKITT 508 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~---~l~~L~sL~~L~Ls~N--~Ls~l~~L~~L--~~L~~LdLS~N~Ls~ 508 (645)
.+..|.|++|+|..|.. --...++|+.|+|++| .+.....+..+ ..|++|-|.+|.|..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34444455554443321 1123355666666666 33332222222 235666666666654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.48 E-value=7.8 Score=26.47 Aligned_cols=14 Identities=50% Similarity=0.598 Sum_probs=6.0
Q ss_pred CCCEEECcCCCCCC
Q 006421 495 KLTVLDMSFNKITT 508 (645)
Q Consensus 495 ~L~~LdLS~N~Ls~ 508 (645)
+|+.|+|++|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 34444444444433
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.31 E-value=7.8 Score=26.46 Aligned_cols=16 Identities=50% Similarity=0.584 Sum_probs=9.6
Q ss_pred CCCcEEEccCCCCCCc
Q 006421 472 TLIKELYLAGNKISDI 487 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~l 487 (645)
.+|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=57.64 E-value=4.7 Score=45.00 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=94.5
Q ss_pred CCCCCCEEEccCC-cCCCCCC---CCCCCCCCEEecCCCCC-CCC--cC-CCCCCCCcEEEccCCc-cccccC--cCcCC
Q 006421 403 HFSSLRSVNLSNN-FIVHIPT---GSMPKGLHTLNLSRNKI-NTI--EG-LREMTRLRVLDLSYNR-IFRIGH--GLSNC 471 (645)
Q Consensus 403 ~L~~L~~LdLs~N-~Lt~ip~---~~~~~sL~~LdLs~N~L-s~l--p~-L~~L~sL~~LdLS~N~-Ls~LP~--~l~~L 471 (645)
.+..+..+++..+ .++...- ...+..|+.|+.+++.- +.. .. ..+..+|++|-|+.++ |+.... --.++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 4555667776664 3443221 12236789999888743 332 22 3466889999998875 553221 23467
Q ss_pred CCCcEEEccCCCCCCc----ccccCCCCCCEEECcCCCCCCcc---chhHhhhcCCCCcEEEccCCCCCcCCChhHHHHH
Q 006421 472 TLIKELYLAGNKISDI----EGLHRLLKLTVLDMSFNKITTTK---ALGQLVANYQSLLALNLLGNPIQSNISDDQLRKA 544 (645)
Q Consensus 472 ~sL~~L~Ls~N~Ls~l----~~L~~L~~L~~LdLS~N~Ls~~~---~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~~ 544 (645)
+.|+.|++..+.+..- ..-.+++.|+.|.|+++.+..-. .+...-..+..|..|.|+++++. ++..+.
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i---~d~~Le-- 420 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI---TDATLE-- 420 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc---hHHHHH--
Confidence 7899999988865332 22356788999999988754321 22233356778999999999884 343332
Q ss_pred HhcCCCCCceecccCCC
Q 006421 545 VCSLLPKLVYLNKQPIK 561 (645)
Q Consensus 545 vl~~L~~L~~Ld~~~is 561 (645)
.+..+++|+.++..++.
T Consensus 421 ~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQ 437 (483)
T ss_pred HHhhCcccceeeeechh
Confidence 24456677776665543
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=56.75 E-value=6.6 Score=26.94 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=11.5
Q ss_pred CCcEEEccCCccccccC
Q 006421 450 RLRVLDLSYNRIFRIGH 466 (645)
Q Consensus 450 sL~~LdLS~N~Ls~LP~ 466 (645)
.|+.|++++|+|+.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777776664
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.10 E-value=12 Score=24.32 Aligned_cols=14 Identities=50% Similarity=0.605 Sum_probs=6.8
Q ss_pred CCCcEEEccCCccc
Q 006421 449 TRLRVLDLSYNRIF 462 (645)
Q Consensus 449 ~sL~~LdLS~N~Ls 462 (645)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666666554
No 91
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=46.99 E-value=12 Score=41.92 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=98.9
Q ss_pred CCCCCCCEEEccCCcC-CCCCCC---CCCCCCCEEecCCCC-CCCC--cCC-CCCCCCcEEEccCCccc---cccCcCcC
Q 006421 402 SHFSSLRSVNLSNNFI-VHIPTG---SMPKGLHTLNLSRNK-INTI--EGL-REMTRLRVLDLSYNRIF---RIGHGLSN 470 (645)
Q Consensus 402 ~~L~~L~~LdLs~N~L-t~ip~~---~~~~sL~~LdLs~N~-Ls~l--p~L-~~L~sL~~LdLS~N~Ls---~LP~~l~~ 470 (645)
..+..|+.|+.+++.. +...-. .-..+|++|-|+.++ |+.. ..+ .+.+.|+.|++..+.+. ++-.--.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 3577899999988543 322111 122789999999985 4432 222 46788999999888655 34333457
Q ss_pred CCCCcEEEccCCCC-CCc------ccccCCCCCCEEECcCCCCCCccchhHhhhcCCCCcEEEccCCCCCcCCChhHHHH
Q 006421 471 CTLIKELYLAGNKI-SDI------EGLHRLLKLTVLDMSFNKITTTKALGQLVANYQSLLALNLLGNPIQSNISDDQLRK 543 (645)
Q Consensus 471 L~sL~~L~Ls~N~L-s~l------~~L~~L~~L~~LdLS~N~Ls~~~~LP~~l~~L~sL~~LdLs~N~L~g~iP~~~l~~ 543 (645)
++.|+.|.|+++.+ ++. ..-..+..|..|-|+++.++.-. .-..+..+++|+.++|-++.-...-+ + .
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~---i-~ 445 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEA---I-S 445 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhh---h-H
Confidence 88999999998854 322 12345678999999999876532 33567888999999988875432111 1 2
Q ss_pred HHhcCCCCCceecc
Q 006421 544 AVCSLLPKLVYLNK 557 (645)
Q Consensus 544 ~vl~~L~~L~~Ld~ 557 (645)
.+...+|+++..-.
T Consensus 446 ~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 446 RFATHLPNIKVHAY 459 (483)
T ss_pred HHHhhCccceehhh
Confidence 23556888876544
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=32.66 E-value=32 Score=23.48 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=7.0
Q ss_pred CCcEEEccCCccc
Q 006421 450 RLRVLDLSYNRIF 462 (645)
Q Consensus 450 sL~~LdLS~N~Ls 462 (645)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 93
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=30.22 E-value=31 Score=23.76 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCCCceeccc
Q 006421 540 QLRKAVCSLLPKLVYLNKQ 558 (645)
Q Consensus 540 ~l~~~vl~~L~~L~~Ld~~ 558 (645)
.|+..++..+|+|++||..
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~ 21 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXX 21 (26)
T ss_pred cHHHHHHHHCCccceeccc
Confidence 5788999999999999974
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.54 E-value=66 Score=36.85 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=7.4
Q ss_pred CCCCcEEEccCCcc
Q 006421 448 MTRLRVLDLSYNRI 461 (645)
Q Consensus 448 L~sL~~LdLS~N~L 461 (645)
-++|+..+++.|..
T Consensus 267 ~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 267 TTKLTFGKLSRNGT 280 (553)
T ss_pred ccccchhhhccCCC
Confidence 34555555555544
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.23 E-value=66 Score=36.81 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=11.3
Q ss_pred CccccccccccCCccC
Q 006421 583 QSSQRKAVKRTGRSGS 598 (645)
Q Consensus 583 ~sl~~~~l~~n~lSG~ 598 (645)
.+.+.+.++.|++.|.
T Consensus 354 ~R~q~l~~rdnnldge 369 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGE 369 (553)
T ss_pred eeeeEeeccccccccc
Confidence 4466777777887774
No 96
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=25.29 E-value=92 Score=23.39 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=18.7
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCCCEEecC
Q 006421 405 SSLRSVNLSNNFIVHIPTGSMPKGLHTLNLS 435 (645)
Q Consensus 405 ~~L~~LdLs~N~Lt~ip~~~~~~sL~~LdLs 435 (645)
.+|+.|.+.++.-..+..+.++.+|+.|.++
T Consensus 12 ~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 3566666654444455566666677777654
Done!